Query 006303
Match_columns 651
No_of_seqs 537 out of 3573
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 21:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 7.9E-63 1.7E-67 527.8 61.8 508 70-651 369-910 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 9.3E-63 2E-67 539.4 53.8 526 68-639 48-646 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.4E-61 5.1E-66 516.5 60.8 469 116-649 373-875 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 3.7E-61 8.1E-66 526.8 52.4 499 69-647 150-686 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.6E-58 3.4E-63 494.0 51.5 465 71-651 87-558 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.5E-57 1.4E-61 481.6 47.3 426 116-645 90-521 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.1E-28 2E-32 270.7 62.2 533 59-648 352-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-27 6.5E-32 266.4 62.9 540 59-649 318-865 (899)
9 PRK11447 cellulose synthase su 99.9 1.1E-20 2.3E-25 213.1 60.8 558 59-642 51-735 (1157)
10 PRK11447 cellulose synthase su 99.9 5.4E-20 1.2E-24 207.4 59.0 460 83-611 159-739 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 5.9E-21 1.3E-25 181.6 32.6 370 59-462 105-485 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 3.1E-20 6.8E-25 176.7 36.7 441 59-618 37-489 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.6E-17 3.4E-22 178.8 54.7 499 58-643 66-702 (987)
14 PRK11788 tetratricopeptide rep 99.9 2.9E-19 6.2E-24 179.8 33.1 304 226-619 40-354 (389)
15 TIGR00990 3a0801s09 mitochondr 99.9 3.3E-17 7.1E-22 173.5 50.0 361 72-462 128-496 (615)
16 TIGR00990 3a0801s09 mitochondr 99.9 4.3E-17 9.2E-22 172.7 45.9 421 116-612 130-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 5.9E-18 1.3E-22 170.3 35.3 295 296-650 42-347 (389)
18 PRK09782 bacteriophage N4 rece 99.8 1.2E-15 2.7E-20 164.3 54.1 520 71-642 44-667 (987)
19 PRK15174 Vi polysaccharide exp 99.8 9.6E-17 2.1E-21 169.2 43.9 288 164-462 51-347 (656)
20 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.4E-21 168.6 43.3 331 73-462 44-381 (656)
21 KOG2002 TPR-containing nuclear 99.8 4.3E-16 9.3E-21 156.9 43.0 549 59-643 153-741 (1018)
22 KOG4422 Uncharacterized conser 99.8 4.6E-15 1E-19 135.8 41.8 462 120-629 122-607 (625)
23 PRK10049 pgaA outer membrane p 99.8 1.8E-15 4E-20 163.1 42.3 337 71-461 15-387 (765)
24 PRK10049 pgaA outer membrane p 99.8 3.1E-15 6.8E-20 161.4 42.6 424 118-628 20-470 (765)
25 KOG2002 TPR-containing nuclear 99.8 2.5E-14 5.4E-19 144.4 43.6 482 57-612 220-745 (1018)
26 PRK14574 hmsH outer membrane p 99.8 1.9E-13 4.2E-18 144.5 52.3 463 78-623 41-522 (822)
27 PRK14574 hmsH outer membrane p 99.8 1.7E-13 3.8E-18 144.8 49.8 425 165-645 44-511 (822)
28 KOG2003 TPR repeat-containing 99.7 8.2E-14 1.8E-18 128.6 33.9 426 152-635 198-711 (840)
29 KOG4422 Uncharacterized conser 99.7 1.8E-11 4E-16 112.6 40.5 409 165-644 125-587 (625)
30 KOG2076 RNA polymerase III tra 99.7 5.9E-11 1.3E-15 119.7 46.5 510 76-633 144-720 (895)
31 KOG0495 HAT repeat protein [RN 99.6 4.5E-10 9.7E-15 109.2 49.2 497 59-646 338-879 (913)
32 KOG2003 TPR repeat-containing 99.6 2.6E-11 5.7E-16 112.3 37.5 410 70-563 275-709 (840)
33 KOG2076 RNA polymerase III tra 99.6 1.4E-10 3E-15 117.1 43.3 291 168-462 152-478 (895)
34 KOG0495 HAT repeat protein [RN 99.5 2E-08 4.3E-13 98.1 50.8 402 173-641 364-776 (913)
35 TIGR00540 hemY_coli hemY prote 99.5 3.5E-11 7.6E-16 120.5 33.8 284 168-461 97-398 (409)
36 PRK10747 putative protoheme IX 99.5 1.1E-10 2.3E-15 116.3 36.5 248 303-610 132-388 (398)
37 KOG1126 DNA-binding cell divis 99.5 3.7E-12 8E-17 124.2 24.7 259 158-429 356-622 (638)
38 KOG1915 Cell cycle control pro 99.5 4.9E-09 1.1E-13 98.2 43.5 414 165-642 83-531 (677)
39 KOG1126 DNA-binding cell divis 99.5 6.4E-12 1.4E-16 122.6 25.9 281 235-577 333-620 (638)
40 TIGR00540 hemY_coli hemY prote 99.5 7.2E-11 1.6E-15 118.3 33.8 224 330-610 159-397 (409)
41 PF13429 TPR_15: Tetratricopep 99.5 1.6E-13 3.4E-18 130.5 13.6 255 165-460 18-275 (280)
42 KOG0547 Translocase of outer m 99.5 1.4E-09 3.1E-14 102.3 38.4 428 71-576 115-565 (606)
43 PRK10747 putative protoheme IX 99.5 4.9E-10 1.1E-14 111.6 37.6 285 296-644 91-387 (398)
44 KOG0547 Translocase of outer m 99.5 5.3E-10 1.2E-14 105.0 34.6 407 118-610 120-564 (606)
45 KOG1155 Anaphase-promoting com 99.5 1.6E-09 3.6E-14 101.2 37.6 284 165-462 174-461 (559)
46 KOG1155 Anaphase-promoting com 99.5 3E-09 6.5E-14 99.5 38.2 351 221-639 164-528 (559)
47 COG2956 Predicted N-acetylgluc 99.5 1.9E-10 4.2E-15 102.3 28.7 283 169-465 49-350 (389)
48 PF13429 TPR_15: Tetratricopep 99.5 5.8E-13 1.3E-17 126.6 12.8 227 226-460 13-241 (280)
49 COG2956 Predicted N-acetylgluc 99.4 2.4E-09 5.1E-14 95.5 31.4 286 302-649 48-346 (389)
50 KOG2047 mRNA splicing factor [ 99.4 1.8E-07 3.9E-12 91.4 45.9 505 71-645 102-721 (835)
51 KOG3785 Uncharacterized conser 99.4 6.7E-09 1.4E-13 93.7 33.3 458 78-633 29-536 (557)
52 COG3071 HemY Uncharacterized e 99.4 1.3E-09 2.8E-14 100.3 27.5 283 84-425 97-388 (400)
53 KOG1915 Cell cycle control pro 99.4 3.9E-07 8.6E-12 85.8 46.5 419 124-612 84-536 (677)
54 COG3071 HemY Uncharacterized e 99.4 6.8E-08 1.5E-12 89.2 37.5 293 292-645 87-388 (400)
55 KOG4318 Bicoid mRNA stability 99.3 1E-08 2.2E-13 103.5 33.6 532 67-645 21-592 (1088)
56 PF13041 PPR_2: PPR repeat fam 99.3 5.3E-12 1.2E-16 83.4 6.8 50 581-630 1-50 (50)
57 KOG4318 Bicoid mRNA stability 99.3 2.3E-10 5.1E-15 114.9 19.3 88 243-342 12-101 (1088)
58 KOG2376 Signal recognition par 99.3 1.9E-07 4E-12 90.6 37.6 223 158-393 15-254 (652)
59 KOG1173 Anaphase-promoting com 99.3 1.9E-07 4.2E-12 90.0 37.2 465 71-629 16-533 (611)
60 KOG1174 Anaphase-promoting com 99.3 6E-07 1.3E-11 83.2 38.7 289 235-618 210-504 (564)
61 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.7E-16 81.6 6.5 50 546-595 1-50 (50)
62 KOG1840 Kinesin light chain [C 99.3 1.1E-09 2.3E-14 108.4 21.8 253 71-355 199-481 (508)
63 KOG1840 Kinesin light chain [C 99.3 4.6E-09 9.9E-14 104.0 26.0 256 219-576 197-478 (508)
64 PRK12370 invasion protein regu 99.2 5.1E-09 1.1E-13 109.2 26.3 211 169-426 275-501 (553)
65 KOG3785 Uncharacterized conser 99.2 4.1E-07 8.9E-12 82.4 34.2 440 123-645 32-488 (557)
66 TIGR02521 type_IV_pilW type IV 99.2 1.6E-08 3.5E-13 93.8 27.0 197 363-642 31-227 (234)
67 KOG1156 N-terminal acetyltrans 99.2 1.5E-06 3.3E-11 85.4 40.2 246 168-426 20-282 (700)
68 TIGR02521 type_IV_pilW type IV 99.2 1.4E-08 3.1E-13 94.1 26.1 199 222-460 32-230 (234)
69 PRK12370 invasion protein regu 99.2 3.1E-08 6.7E-13 103.4 30.9 261 323-650 255-535 (553)
70 KOG1173 Anaphase-promoting com 99.2 7.5E-08 1.6E-12 92.7 29.2 283 155-445 244-534 (611)
71 PF12569 NARP1: NMDA receptor- 99.2 2.7E-06 5.9E-11 85.8 41.0 292 120-461 11-333 (517)
72 KOG1156 N-terminal acetyltrans 99.2 7.2E-06 1.6E-10 80.8 42.0 453 123-638 17-502 (700)
73 KOG2376 Signal recognition par 99.1 1.1E-06 2.3E-11 85.5 34.8 385 77-539 18-517 (652)
74 KOG2047 mRNA splicing factor [ 99.1 1.1E-05 2.4E-10 79.3 48.4 302 257-610 249-613 (835)
75 PF12569 NARP1: NMDA receptor- 99.1 6.3E-07 1.4E-11 90.3 33.3 67 228-297 11-77 (517)
76 KOG1129 TPR repeat-containing 99.1 8.8E-09 1.9E-13 91.9 17.2 223 117-352 227-457 (478)
77 KOG1129 TPR repeat-containing 99.0 4E-08 8.7E-13 87.8 18.8 225 329-610 228-456 (478)
78 COG3063 PilF Tfp pilus assembl 99.0 1.6E-07 3.5E-12 80.2 21.3 197 71-284 35-235 (250)
79 PRK11189 lipoprotein NlpI; Pro 99.0 3.4E-07 7.3E-12 87.3 24.5 116 168-285 39-161 (296)
80 KOG0624 dsRNA-activated protei 99.0 3.5E-06 7.6E-11 76.3 28.8 329 71-463 38-371 (504)
81 COG3063 PilF Tfp pilus assembl 99.0 8E-07 1.7E-11 76.1 23.4 91 368-460 40-130 (250)
82 cd05804 StaR_like StaR_like; a 99.0 1.5E-06 3.2E-11 86.3 30.0 206 67-285 3-215 (355)
83 KOG3616 Selective LIM binding 99.0 8.5E-06 1.8E-10 81.2 33.7 195 54-283 461-675 (1636)
84 KOG3617 WD40 and TPR repeat-co 99.0 3.1E-05 6.7E-10 78.4 37.5 274 123-424 836-1171(1416)
85 KOG1127 TPR repeat-containing 99.0 9.8E-06 2.1E-10 83.7 34.6 174 59-249 481-658 (1238)
86 KOG1174 Anaphase-promoting com 98.9 2.9E-06 6.4E-11 78.7 27.7 284 82-392 207-500 (564)
87 PRK11189 lipoprotein NlpI; Pro 98.9 1.5E-06 3.3E-11 82.8 27.4 146 306-459 43-191 (296)
88 KOG4162 Predicted calmodulin-b 98.9 4.6E-05 9.9E-10 76.9 36.3 374 69-462 321-783 (799)
89 KOG3617 WD40 and TPR repeat-co 98.9 3.5E-05 7.6E-10 78.0 34.4 248 79-390 736-994 (1416)
90 KOG4340 Uncharacterized conser 98.8 9.3E-06 2E-10 72.1 26.4 26 548-573 310-335 (459)
91 KOG4340 Uncharacterized conser 98.8 1.2E-05 2.5E-10 71.5 26.5 316 73-424 12-336 (459)
92 KOG4162 Predicted calmodulin-b 98.8 0.00027 5.8E-09 71.6 45.8 411 218-649 320-785 (799)
93 cd05804 StaR_like StaR_like; a 98.8 3.9E-05 8.4E-10 76.2 33.2 198 222-427 7-215 (355)
94 KOG3616 Selective LIM binding 98.8 0.0001 2.2E-09 73.8 34.0 217 123-387 716-932 (1636)
95 KOG0624 dsRNA-activated protei 98.8 4.1E-06 8.9E-11 75.8 22.1 299 53-392 55-370 (504)
96 KOG0985 Vesicle coat protein c 98.8 0.00025 5.3E-09 73.8 37.0 113 323-457 1132-1244(1666)
97 PRK04841 transcriptional regul 98.7 4.1E-05 8.9E-10 86.5 35.5 312 118-461 379-719 (903)
98 KOG1125 TPR repeat-containing 98.7 3.6E-06 7.9E-11 81.8 22.6 231 79-390 293-525 (579)
99 PRK04841 transcriptional regul 98.7 0.00017 3.6E-09 81.6 40.0 374 197-613 347-761 (903)
100 KOG1914 mRNA cleavage and poly 98.7 0.00031 6.7E-09 68.2 42.9 210 379-635 309-527 (656)
101 KOG2053 Mitochondrial inherita 98.7 0.00052 1.1E-08 70.8 41.4 490 80-648 18-571 (932)
102 PF12854 PPR_1: PPR repeat 98.7 2.4E-08 5.2E-13 58.8 4.1 32 578-609 2-33 (34)
103 KOG1125 TPR repeat-containing 98.7 9.8E-06 2.1E-10 78.9 22.8 234 372-650 294-530 (579)
104 PF04733 Coatomer_E: Coatomer 98.6 5.6E-07 1.2E-11 84.4 13.8 222 324-611 35-264 (290)
105 PF12854 PPR_1: PPR repeat 98.6 3.8E-08 8.3E-13 58.0 3.7 34 542-575 1-34 (34)
106 PF04733 Coatomer_E: Coatomer 98.6 4.9E-06 1.1E-10 78.1 19.5 144 303-461 116-264 (290)
107 KOG0985 Vesicle coat protein c 98.6 0.00071 1.5E-08 70.5 34.5 200 222-458 1105-1304(1666)
108 KOG1127 TPR repeat-containing 98.6 0.0015 3.2E-08 68.4 36.6 382 46-458 572-992 (1238)
109 KOG0548 Molecular co-chaperone 98.6 0.00082 1.8E-08 65.4 32.6 234 327-630 227-471 (539)
110 TIGR03302 OM_YfiO outer membra 98.6 1.2E-05 2.5E-10 74.5 20.0 190 71-285 33-232 (235)
111 KOG1070 rRNA processing protei 98.5 0.00012 2.6E-09 78.7 28.4 224 362-639 1457-1692(1710)
112 KOG0548 Molecular co-chaperone 98.5 0.00023 5E-09 69.1 27.9 375 167-612 14-421 (539)
113 PLN02789 farnesyltranstransfer 98.5 6.2E-05 1.3E-09 71.7 23.8 49 238-287 125-173 (320)
114 KOG1128 Uncharacterized conser 98.5 4.4E-05 9.5E-10 76.6 22.3 217 365-648 400-617 (777)
115 PRK10370 formate-dependent nit 98.5 1.8E-05 3.9E-10 70.0 17.5 148 117-286 20-174 (198)
116 PRK14720 transcript cleavage f 98.4 0.00027 5.9E-09 75.3 27.7 237 255-594 30-268 (906)
117 KOG3081 Vesicle coat complex C 98.4 0.00022 4.8E-09 62.9 22.3 94 515-610 169-269 (299)
118 KOG3081 Vesicle coat complex C 98.4 0.00035 7.6E-09 61.6 23.1 238 333-636 17-259 (299)
119 TIGR03302 OM_YfiO outer membra 98.4 4.1E-05 8.9E-10 70.8 19.0 187 221-462 33-232 (235)
120 PLN02789 farnesyltranstransfer 98.4 0.00073 1.6E-08 64.5 27.4 207 333-596 46-268 (320)
121 COG5010 TadD Flp pilus assembl 98.4 8.7E-05 1.9E-09 65.4 18.9 166 218-425 64-229 (257)
122 KOG1128 Uncharacterized conser 98.4 4.3E-05 9.3E-10 76.7 18.6 211 227-462 404-616 (777)
123 KOG1070 rRNA processing protei 98.3 0.0004 8.7E-09 74.9 26.6 227 323-602 1457-1690(1710)
124 PRK15179 Vi polysaccharide bio 98.3 0.00025 5.4E-09 74.9 25.4 134 321-462 83-217 (694)
125 PRK14720 transcript cleavage f 98.3 0.00023 4.9E-09 75.9 24.3 148 220-374 115-268 (906)
126 PRK10370 formate-dependent nit 98.3 0.00025 5.3E-09 62.8 20.2 125 304-436 54-181 (198)
127 PRK15179 Vi polysaccharide bio 98.2 0.00028 6.1E-09 74.4 22.1 115 168-285 99-217 (694)
128 PRK15359 type III secretion sy 98.2 9.7E-05 2.1E-09 61.7 15.3 119 309-438 13-131 (144)
129 KOG3060 Uncharacterized conser 98.2 0.00056 1.2E-08 59.9 19.0 184 84-285 25-220 (289)
130 KOG1914 mRNA cleavage and poly 98.2 0.0096 2.1E-07 58.3 39.3 126 512-640 364-494 (656)
131 TIGR00756 PPR pentatricopeptid 98.1 4.4E-06 9.4E-11 50.2 4.5 33 585-617 2-34 (35)
132 KOG2053 Mitochondrial inherita 98.1 0.016 3.5E-07 60.3 41.3 435 168-644 22-533 (932)
133 COG5010 TadD Flp pilus assembl 98.1 0.00092 2E-08 59.1 20.0 130 322-458 98-227 (257)
134 PRK15359 type III secretion sy 98.1 0.00024 5.3E-09 59.3 15.9 109 344-462 13-121 (144)
135 PF13812 PPR_3: Pentatricopept 98.1 6E-06 1.3E-10 49.2 4.5 33 584-616 2-34 (34)
136 COG4783 Putative Zn-dependent 98.0 0.0076 1.6E-07 58.4 25.6 119 332-458 314-433 (484)
137 PF07079 DUF1347: Protein of u 98.0 0.016 3.4E-07 55.6 43.1 457 79-626 14-533 (549)
138 TIGR02552 LcrH_SycD type III s 98.0 0.00046 9.9E-09 57.3 15.6 106 323-436 16-121 (135)
139 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.9E-10 48.1 4.3 34 550-583 2-35 (35)
140 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.6E-10 47.2 4.3 33 549-581 2-34 (34)
141 TIGR02552 LcrH_SycD type III s 97.9 0.00051 1.1E-08 57.0 14.8 99 362-462 16-114 (135)
142 KOG3060 Uncharacterized conser 97.9 0.013 2.7E-07 51.8 23.8 188 234-428 25-221 (289)
143 PF08579 RPM2: Mitochondrial r 97.9 0.0004 8.7E-09 52.6 11.2 79 552-630 29-116 (120)
144 PF14938 SNAP: Soluble NSF att 97.8 0.0059 1.3E-07 57.8 21.7 69 70-141 34-102 (282)
145 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.034 7.3E-07 53.3 34.8 89 46-144 18-107 (660)
146 COG4783 Putative Zn-dependent 97.8 0.02 4.4E-07 55.6 24.5 144 293-462 309-454 (484)
147 PF09976 TPR_21: Tetratricopep 97.8 0.0013 2.8E-08 55.2 15.0 130 325-459 13-144 (145)
148 PF10037 MRP-S27: Mitochondria 97.8 0.00043 9.4E-09 67.6 13.2 126 319-446 61-186 (429)
149 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0012 2.6E-08 64.4 16.2 125 327-461 172-296 (395)
150 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.6E-10 44.9 3.2 29 585-613 2-30 (31)
151 PF09976 TPR_21: Tetratricopep 97.7 0.001 2.2E-08 55.8 13.4 131 71-246 12-143 (145)
152 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0016 3.5E-08 63.4 16.1 121 226-390 174-295 (395)
153 PF14938 SNAP: Soluble NSF att 97.7 0.0041 8.9E-08 58.9 18.2 97 550-647 157-263 (282)
154 PF10037 MRP-S27: Mitochondria 97.7 0.00061 1.3E-08 66.6 12.7 120 512-631 63-186 (429)
155 PF08579 RPM2: Mitochondrial r 97.6 0.0015 3.3E-08 49.6 11.3 79 367-445 29-116 (120)
156 PF06239 ECSIT: Evolutionarily 97.6 0.00064 1.4E-08 58.6 10.3 87 547-633 46-153 (228)
157 PF01535 PPR: PPR repeat; Int 97.6 6.6E-05 1.4E-09 43.4 3.2 31 549-579 1-31 (31)
158 PRK15363 pathogenicity island 97.6 0.00072 1.6E-08 55.5 9.6 84 164-249 44-131 (157)
159 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0039 8.4E-08 50.2 14.0 102 325-428 3-106 (119)
160 PRK10866 outer membrane biogen 97.5 0.018 4E-07 52.8 19.3 183 76-283 37-239 (243)
161 cd00189 TPR Tetratricopeptide 97.4 0.0034 7.4E-08 47.9 11.6 94 327-426 3-96 (100)
162 PF05843 Suf: Suppressor of fo 97.4 0.0031 6.7E-08 59.5 13.2 142 434-625 2-147 (280)
163 PRK15363 pathogenicity island 97.4 0.0066 1.4E-07 50.0 13.1 93 329-427 40-132 (157)
164 KOG2041 WD40 repeat protein [G 97.4 0.19 4.2E-06 51.1 27.6 100 164-282 805-904 (1189)
165 KOG1130 Predicted G-alpha GTPa 97.4 0.013 2.8E-07 55.3 16.5 138 325-462 196-344 (639)
166 PF06239 ECSIT: Evolutionarily 97.4 0.0052 1.1E-07 53.1 12.9 50 303-352 117-167 (228)
167 cd00189 TPR Tetratricopeptide 97.4 0.0033 7.2E-08 48.0 11.3 95 365-461 2-96 (100)
168 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0028 6.1E-08 51.1 11.1 105 71-185 2-106 (119)
169 PF04840 Vps16_C: Vps16, C-ter 97.4 0.15 3.3E-06 48.7 31.2 110 325-458 178-287 (319)
170 PF12895 Apc3: Anaphase-promot 97.4 0.00067 1.4E-08 50.6 6.4 82 337-423 2-83 (84)
171 PLN03088 SGT1, suppressor of 97.3 0.0021 4.5E-08 63.0 11.3 88 165-285 12-99 (356)
172 PF12895 Apc3: Anaphase-promot 97.3 0.00047 1E-08 51.4 5.1 81 376-458 2-83 (84)
173 PF13432 TPR_16: Tetratricopep 97.3 0.0011 2.3E-08 46.6 6.3 58 77-142 3-60 (65)
174 PF12688 TPR_5: Tetratrico pep 97.3 0.012 2.6E-07 46.7 12.6 62 118-184 6-67 (120)
175 PF05843 Suf: Suppressor of fo 97.2 0.0078 1.7E-07 56.8 13.6 94 257-351 2-97 (280)
176 PRK10803 tol-pal system protei 97.2 0.014 3E-07 54.0 14.8 105 71-185 143-247 (263)
177 PLN03088 SGT1, suppressor of 97.2 0.013 2.7E-07 57.6 15.4 92 331-428 9-100 (356)
178 PF13525 YfiO: Outer membrane 97.2 0.035 7.6E-07 49.6 16.5 181 71-276 5-198 (203)
179 KOG0550 Molecular chaperone (D 97.1 0.095 2.1E-06 49.9 19.1 272 123-428 59-351 (486)
180 PRK02603 photosystem I assembl 97.1 0.031 6.7E-07 48.5 15.3 86 324-413 35-121 (172)
181 KOG0553 TPR repeat-containing 97.1 0.0032 6.9E-08 57.0 8.9 81 167-249 93-177 (304)
182 PRK02603 photosystem I assembl 97.1 0.056 1.2E-06 46.9 16.7 90 363-453 35-126 (172)
183 CHL00033 ycf3 photosystem I as 97.0 0.045 9.8E-07 47.3 15.3 92 365-457 37-137 (168)
184 CHL00033 ycf3 photosystem I as 97.0 0.024 5.2E-07 49.0 13.4 98 324-424 35-139 (168)
185 PRK15331 chaperone protein Sic 97.0 0.012 2.6E-07 48.7 10.6 93 155-249 37-133 (165)
186 PRK10153 DNA-binding transcrip 97.0 0.055 1.2E-06 55.7 17.8 66 322-393 418-483 (517)
187 KOG1585 Protein required for f 97.0 0.063 1.4E-06 47.2 15.2 104 70-182 30-137 (308)
188 PF12688 TPR_5: Tetratrico pep 97.0 0.021 4.6E-07 45.3 11.6 98 76-183 6-103 (120)
189 PF13414 TPR_11: TPR repeat; P 96.9 0.004 8.7E-08 44.2 6.8 64 71-142 3-67 (69)
190 PRK10866 outer membrane biogen 96.9 0.32 7E-06 44.7 22.7 58 588-645 180-239 (243)
191 KOG0553 TPR repeat-containing 96.9 0.014 3.1E-07 52.9 11.3 98 333-438 90-187 (304)
192 PRK10153 DNA-binding transcrip 96.9 0.1 2.2E-06 53.8 18.7 75 546-624 418-492 (517)
193 PF14559 TPR_19: Tetratricopep 96.9 0.0055 1.2E-07 43.3 6.9 63 232-297 2-64 (68)
194 PF04840 Vps16_C: Vps16, C-ter 96.8 0.5 1.1E-05 45.2 26.4 59 164-232 9-67 (319)
195 PF14559 TPR_19: Tetratricopep 96.8 0.0065 1.4E-07 43.0 6.6 51 336-391 3-53 (68)
196 PF13432 TPR_16: Tetratricopep 96.7 0.009 1.9E-07 41.8 7.2 56 371-427 5-60 (65)
197 PF13424 TPR_12: Tetratricopep 96.7 0.0048 1E-07 45.1 5.9 68 71-141 5-74 (78)
198 COG4235 Cytochrome c biogenesi 96.7 0.04 8.8E-07 50.4 12.5 113 171-286 138-257 (287)
199 KOG1130 Predicted G-alpha GTPa 96.7 0.21 4.6E-06 47.5 17.3 300 78-426 24-343 (639)
200 PF03704 BTAD: Bacterial trans 96.6 0.04 8.8E-07 46.2 11.8 123 155-292 6-137 (146)
201 COG4700 Uncharacterized protei 96.6 0.23 5E-06 41.8 15.3 133 321-459 86-219 (251)
202 PF08631 SPO22: Meiosis protei 96.6 0.65 1.4E-05 43.9 23.0 59 82-142 4-65 (278)
203 PF12921 ATP13: Mitochondrial 96.6 0.08 1.7E-06 42.5 12.5 86 547-632 1-102 (126)
204 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.071 1.5E-06 52.1 14.2 71 66-142 71-141 (453)
205 PF13414 TPR_11: TPR repeat; P 96.6 0.017 3.6E-07 41.0 7.8 62 324-390 3-65 (69)
206 COG3898 Uncharacterized membra 96.6 0.72 1.6E-05 43.9 30.5 243 169-427 134-392 (531)
207 PF03704 BTAD: Bacterial trans 96.5 0.091 2E-06 44.1 13.2 71 365-436 64-139 (146)
208 KOG2041 WD40 repeat protein [G 96.5 1.3 2.8E-05 45.5 29.5 56 360-424 849-904 (1189)
209 COG4235 Cytochrome c biogenesi 96.4 0.22 4.8E-06 45.8 15.2 102 321-428 153-257 (287)
210 PF13525 YfiO: Outer membrane 96.3 0.46 9.9E-06 42.5 17.2 64 222-285 6-71 (203)
211 PF13424 TPR_12: Tetratricopep 96.3 0.016 3.6E-07 42.3 6.5 71 112-183 4-74 (78)
212 KOG0550 Molecular chaperone (D 96.3 1.2 2.5E-05 42.9 24.7 260 168-462 62-350 (486)
213 PRK10803 tol-pal system protei 96.2 0.1 2.2E-06 48.4 12.7 97 325-427 144-246 (263)
214 KOG2796 Uncharacterized conser 96.1 0.96 2.1E-05 40.6 20.2 130 222-352 178-314 (366)
215 COG4700 Uncharacterized protei 96.1 0.71 1.5E-05 39.0 18.3 32 253-284 86-117 (251)
216 KOG2796 Uncharacterized conser 96.1 0.97 2.1E-05 40.6 22.9 96 365-460 179-279 (366)
217 KOG3941 Intermediate in Toll s 96.0 0.088 1.9E-06 47.3 10.3 103 512-633 64-173 (406)
218 PF13170 DUF4003: Protein of u 95.9 0.97 2.1E-05 42.8 17.7 139 414-596 78-230 (297)
219 PF13371 TPR_9: Tetratricopept 95.8 0.073 1.6E-06 38.1 8.0 55 372-427 4-58 (73)
220 PF13371 TPR_9: Tetratricopept 95.8 0.07 1.5E-06 38.2 7.8 58 331-393 2-59 (73)
221 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.28 6.2E-06 48.1 13.5 66 321-392 72-141 (453)
222 PF08631 SPO22: Meiosis protei 95.7 1.9 4.1E-05 40.7 23.2 177 123-324 3-192 (278)
223 PF12921 ATP13: Mitochondrial 95.7 0.17 3.7E-06 40.7 10.0 98 323-444 1-99 (126)
224 PRK15331 chaperone protein Sic 95.5 0.16 3.4E-06 42.3 9.4 88 333-426 46-133 (165)
225 PF07079 DUF1347: Protein of u 95.4 3 6.5E-05 40.8 35.0 428 201-643 16-520 (549)
226 KOG1538 Uncharacterized conser 95.3 1.4 3.1E-05 44.8 16.7 58 329-392 778-846 (1081)
227 KOG1941 Acetylcholine receptor 95.3 1.6 3.4E-05 41.3 15.8 232 82-352 17-274 (518)
228 KOG4555 TPR repeat-containing 95.2 0.42 9.1E-06 37.6 10.1 88 200-287 52-146 (175)
229 PF07035 Mic1: Colon cancer-as 95.2 1.7 3.7E-05 36.7 14.9 102 241-350 14-115 (167)
230 COG1729 Uncharacterized protei 95.1 0.27 5.9E-06 44.6 10.5 102 73-185 144-245 (262)
231 COG4649 Uncharacterized protei 95.1 0.75 1.6E-05 38.4 12.0 54 164-217 67-120 (221)
232 PF13281 DUF4071: Domain of un 95.1 3.5 7.6E-05 40.1 20.4 162 260-427 145-334 (374)
233 PF04053 Coatomer_WDAD: Coatom 95.1 0.72 1.6E-05 46.4 14.6 161 76-282 266-428 (443)
234 KOG0543 FKBP-type peptidyl-pro 95.1 0.16 3.4E-06 48.6 9.3 135 120-285 215-355 (397)
235 KOG0543 FKBP-type peptidyl-pro 95.1 0.98 2.1E-05 43.4 14.4 128 332-462 216-355 (397)
236 COG4785 NlpI Lipoprotein NlpI, 94.9 2 4.2E-05 37.5 14.3 29 257-285 238-266 (297)
237 KOG2280 Vacuolar assembly/sort 94.9 5.7 0.00012 41.6 25.1 93 528-639 699-791 (829)
238 KOG3941 Intermediate in Toll s 94.8 0.63 1.4E-05 42.2 11.6 101 235-352 86-187 (406)
239 PRK11906 transcriptional regul 94.8 2.9 6.2E-05 41.5 17.0 114 234-349 317-432 (458)
240 PF10300 DUF3808: Protein of u 94.7 3.5 7.6E-05 42.3 18.7 175 71-283 188-374 (468)
241 KOG4555 TPR repeat-containing 94.7 1.5 3.3E-05 34.6 12.0 91 333-428 52-145 (175)
242 COG5107 RNA14 Pre-mRNA 3'-end 94.6 4.8 0.0001 39.4 31.4 430 188-647 39-531 (660)
243 KOG1538 Uncharacterized conser 94.5 0.79 1.7E-05 46.5 12.7 80 194-281 750-829 (1081)
244 PF13512 TPR_18: Tetratricopep 94.5 1.1 2.4E-05 36.5 11.3 72 70-148 9-80 (142)
245 PF04053 Coatomer_WDAD: Coatom 94.3 2.3 5E-05 43.0 15.9 158 229-459 269-428 (443)
246 KOG2114 Vacuolar assembly/sort 94.2 9 0.00019 40.8 30.3 181 73-284 336-518 (933)
247 COG1747 Uncharacterized N-term 94.1 6.8 0.00015 39.1 23.1 170 181-353 56-234 (711)
248 KOG2610 Uncharacterized conser 94.0 1.3 2.9E-05 41.2 12.1 151 123-282 113-273 (491)
249 COG1729 Uncharacterized protei 93.8 0.67 1.4E-05 42.2 9.9 92 165-285 151-244 (262)
250 COG3898 Uncharacterized membra 93.8 6.7 0.00015 37.7 32.4 246 303-612 134-392 (531)
251 KOG1941 Acetylcholine receptor 93.7 2.8 6E-05 39.7 13.8 206 71-282 43-272 (518)
252 smart00299 CLH Clathrin heavy 93.5 3.7 8.1E-05 33.9 14.8 125 437-630 11-137 (140)
253 smart00299 CLH Clathrin heavy 93.5 3.7 8.1E-05 33.9 14.9 42 226-268 12-53 (140)
254 KOG1585 Protein required for f 93.5 5.3 0.00012 35.7 17.2 148 258-420 93-249 (308)
255 PF13512 TPR_18: Tetratricopep 93.5 1.5 3.3E-05 35.8 10.5 77 164-269 19-95 (142)
256 PF13428 TPR_14: Tetratricopep 93.3 0.22 4.8E-06 31.2 4.6 33 72-106 2-34 (44)
257 COG3118 Thioredoxin domain-con 93.3 6.8 0.00015 36.3 17.2 141 122-270 143-286 (304)
258 PF13281 DUF4071: Domain of un 93.2 8.8 0.00019 37.5 21.7 85 324-409 141-228 (374)
259 COG3629 DnrI DNA-binding trans 93.2 1.2 2.7E-05 41.2 10.8 80 548-628 153-237 (280)
260 PF10602 RPN7: 26S proteasome 93.1 1 2.2E-05 39.0 9.8 67 71-142 36-102 (177)
261 PF10300 DUF3808: Protein of u 93.0 8 0.00017 39.7 17.6 164 259-426 191-375 (468)
262 KOG2280 Vacuolar assembly/sort 92.9 14 0.00031 38.9 28.8 83 512-609 712-796 (829)
263 COG4785 NlpI Lipoprotein NlpI, 92.7 6.5 0.00014 34.5 16.2 160 256-427 99-266 (297)
264 KOG2610 Uncharacterized conser 92.6 6.6 0.00014 36.9 14.3 94 323-422 136-233 (491)
265 PF10602 RPN7: 26S proteasome 92.6 6.3 0.00014 34.1 13.9 92 548-639 36-134 (177)
266 KOG1920 IkappaB kinase complex 92.5 21 0.00046 39.9 22.9 54 330-390 971-1026(1265)
267 PF13431 TPR_17: Tetratricopep 92.3 0.092 2E-06 30.7 1.6 33 59-92 2-34 (34)
268 TIGR02561 HrpB1_HrpK type III 92.2 3.6 7.9E-05 33.7 10.9 65 155-221 10-74 (153)
269 PF04184 ST7: ST7 protein; In 91.9 4.3 9.3E-05 40.5 13.0 59 553-611 264-323 (539)
270 PRK13184 pknD serine/threonine 91.9 24 0.00053 39.4 27.4 157 295-459 662-830 (932)
271 PF07035 Mic1: Colon cancer-as 91.6 7.7 0.00017 32.9 14.9 135 417-610 13-147 (167)
272 PRK11906 transcriptional regul 91.5 4.5 9.6E-05 40.2 12.8 94 219-314 336-432 (458)
273 COG4649 Uncharacterized protei 91.2 8.3 0.00018 32.5 15.0 122 231-352 68-195 (221)
274 PF13428 TPR_14: Tetratricopep 91.0 1 2.2E-05 28.1 5.6 27 326-352 3-29 (44)
275 PF13176 TPR_7: Tetratricopept 91.0 0.54 1.2E-05 27.9 4.0 26 585-610 1-26 (36)
276 COG3118 Thioredoxin domain-con 91.0 13 0.00028 34.5 15.4 54 231-285 144-197 (304)
277 PF13176 TPR_7: Tetratricopept 90.9 0.21 4.7E-06 29.6 2.2 28 73-100 1-28 (36)
278 PF09613 HrpB1_HrpK: Bacterial 90.9 7.5 0.00016 32.5 11.7 62 154-217 9-70 (160)
279 COG3629 DnrI DNA-binding trans 90.8 3.5 7.6E-05 38.3 10.8 77 365-442 155-236 (280)
280 COG2909 MalT ATP-dependent tra 90.6 29 0.00062 37.6 24.6 261 191-465 347-650 (894)
281 KOG0276 Vesicle coat complex C 90.5 2.2 4.7E-05 43.2 9.7 153 80-282 595-747 (794)
282 COG0457 NrfG FOG: TPR repeat [ 90.3 13 0.00029 33.5 24.0 199 223-427 61-265 (291)
283 COG1747 Uncharacterized N-term 90.2 22 0.00047 35.8 20.3 164 289-463 64-235 (711)
284 KOG2114 Vacuolar assembly/sort 90.2 30 0.00064 37.2 25.1 154 67-248 364-517 (933)
285 COG4105 ComL DNA uptake lipopr 90.1 14 0.00031 33.5 21.2 61 227-287 40-102 (254)
286 COG4105 ComL DNA uptake lipopr 89.8 15 0.00033 33.4 22.9 55 373-427 44-100 (254)
287 KOG1550 Extracellular protein 89.6 22 0.00047 37.6 17.0 17 336-352 261-277 (552)
288 KOG1464 COP9 signalosome, subu 89.5 16 0.00035 33.2 15.3 55 83-141 39-93 (440)
289 PF09613 HrpB1_HrpK: Bacterial 89.3 12 0.00026 31.4 13.1 111 332-453 18-129 (160)
290 KOG4234 TPR repeat-containing 88.8 9.6 0.00021 33.0 10.9 95 79-184 103-197 (271)
291 PF09205 DUF1955: Domain of un 88.5 11 0.00025 30.1 14.0 68 397-465 85-152 (161)
292 COG2976 Uncharacterized protei 88.4 2.9 6.3E-05 36.0 7.7 97 75-185 93-189 (207)
293 PF02259 FAT: FAT domain; Int 87.8 29 0.00064 34.1 21.0 66 546-611 144-212 (352)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 87.8 5.5 0.00012 29.8 7.7 46 531-576 25-70 (103)
295 KOG4570 Uncharacterized conser 87.2 6.5 0.00014 36.6 9.6 49 528-576 115-163 (418)
296 KOG4570 Uncharacterized conser 87.1 8.1 0.00018 36.0 10.1 101 250-352 58-163 (418)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 86.8 5.5 0.00012 29.8 7.3 65 563-628 22-86 (103)
298 PF07719 TPR_2: Tetratricopept 86.7 1.4 3.1E-05 25.3 3.8 32 72-105 2-33 (34)
299 PF13431 TPR_17: Tetratricopep 86.6 0.72 1.6E-05 26.9 2.3 24 218-241 10-33 (34)
300 KOG2066 Vacuolar assembly/sort 85.8 54 0.0012 35.1 26.2 69 200-272 365-439 (846)
301 PF00515 TPR_1: Tetratricopept 85.7 1.7 3.8E-05 25.1 3.8 32 72-105 2-33 (34)
302 PF00515 TPR_1: Tetratricopept 85.3 2.6 5.7E-05 24.3 4.4 27 326-352 3-29 (34)
303 PF04184 ST7: ST7 protein; In 85.3 45 0.00097 33.7 21.6 168 224-409 171-342 (539)
304 KOG0687 26S proteasome regulat 85.2 31 0.00067 32.6 12.8 95 222-316 105-208 (393)
305 KOG1550 Extracellular protein 85.2 55 0.0012 34.6 20.7 174 171-352 228-425 (552)
306 PF11207 DUF2989: Protein of u 84.9 8.8 0.00019 33.5 8.9 44 338-382 154-197 (203)
307 PF10345 Cohesin_load: Cohesin 84.9 61 0.0013 34.9 41.7 126 226-352 105-253 (608)
308 KOG1920 IkappaB kinase complex 84.8 76 0.0016 35.9 24.7 53 555-610 972-1026(1265)
309 KOG0276 Vesicle coat complex C 84.4 16 0.00034 37.5 11.5 82 323-423 665-746 (794)
310 PF02284 COX5A: Cytochrome c o 84.4 14 0.0003 28.0 8.5 76 551-628 11-89 (108)
311 PF13374 TPR_10: Tetratricopep 84.0 2.9 6.4E-05 25.4 4.5 27 584-610 3-29 (42)
312 PF02259 FAT: FAT domain; Int 83.9 46 0.001 32.7 18.2 66 396-461 144-212 (352)
313 PF13374 TPR_10: Tetratricopep 83.8 2.7 5.8E-05 25.6 4.2 29 548-576 2-30 (42)
314 PF09205 DUF1955: Domain of un 83.0 23 0.00049 28.5 15.0 141 123-288 12-152 (161)
315 PF07719 TPR_2: Tetratricopept 82.6 4 8.6E-05 23.4 4.4 27 326-352 3-29 (34)
316 COG2976 Uncharacterized protei 82.4 33 0.00071 29.9 14.2 114 307-428 70-189 (207)
317 KOG4234 TPR repeat-containing 82.2 15 0.00031 32.0 8.9 95 333-428 104-198 (271)
318 PF13174 TPR_6: Tetratricopept 82.1 1.8 3.9E-05 24.7 2.7 30 74-105 3-32 (33)
319 KOG1258 mRNA processing protei 81.7 69 0.0015 33.2 34.9 111 129-249 61-179 (577)
320 KOG1258 mRNA processing protei 81.7 69 0.0015 33.2 35.6 187 397-634 296-491 (577)
321 PF13170 DUF4003: Protein of u 81.5 50 0.0011 31.5 21.7 129 273-406 79-225 (297)
322 PF02284 COX5A: Cytochrome c o 80.9 22 0.00049 27.0 10.1 63 528-591 25-87 (108)
323 PF13929 mRNA_stabil: mRNA sta 80.8 49 0.0011 30.9 16.2 95 512-606 161-261 (292)
324 PF07163 Pex26: Pex26 protein; 80.3 49 0.0011 30.6 14.4 104 73-183 37-146 (309)
325 PF04097 Nic96: Nup93/Nic96; 80.1 91 0.002 33.5 21.7 90 330-428 264-357 (613)
326 PF13174 TPR_6: Tetratricopept 79.2 3.2 6.8E-05 23.6 3.1 28 115-142 2-29 (33)
327 PF07721 TPR_4: Tetratricopept 79.2 2.4 5.3E-05 22.8 2.4 24 73-96 3-26 (26)
328 PF08424 NRDE-2: NRDE-2, neces 78.9 24 0.00051 34.2 10.8 123 59-187 54-186 (321)
329 PF13929 mRNA_stabil: mRNA sta 78.9 57 0.0012 30.5 18.3 94 546-639 162-259 (292)
330 KOG4648 Uncharacterized conser 78.8 11 0.00025 35.4 7.9 94 330-432 103-197 (536)
331 COG3947 Response regulator con 78.5 58 0.0013 30.4 14.2 68 552-620 283-355 (361)
332 PF10345 Cohesin_load: Cohesin 78.0 1.1E+02 0.0023 33.1 40.7 184 67-283 55-252 (608)
333 PF00637 Clathrin: Region in C 77.4 1.2 2.6E-05 37.1 1.3 86 369-461 13-98 (143)
334 COG0457 NrfG FOG: TPR repeat [ 77.3 53 0.0012 29.3 26.7 222 337-612 36-265 (291)
335 TIGR03504 FimV_Cterm FimV C-te 77.3 6.5 0.00014 24.6 4.1 26 226-251 4-29 (44)
336 TIGR02561 HrpB1_HrpK type III 76.6 42 0.00091 27.8 12.3 52 336-393 22-74 (153)
337 PRK15180 Vi polysaccharide bio 76.5 13 0.00029 36.7 8.0 119 269-393 302-421 (831)
338 PF13181 TPR_8: Tetratricopept 75.8 8.8 0.00019 21.9 4.4 27 585-611 3-29 (34)
339 COG4455 ImpE Protein of avirul 75.7 21 0.00045 31.6 8.1 76 75-160 5-80 (273)
340 PF13181 TPR_8: Tetratricopept 75.5 7.2 0.00016 22.3 4.0 28 326-353 3-30 (34)
341 KOG0687 26S proteasome regulat 75.5 75 0.0016 30.2 12.3 131 509-639 64-202 (393)
342 PF13762 MNE1: Mitochondrial s 75.3 45 0.00098 27.5 11.1 113 512-634 11-131 (145)
343 KOG0686 COP9 signalosome, subu 74.9 89 0.0019 30.7 19.0 96 325-424 151-255 (466)
344 PF07575 Nucleopor_Nup85: Nup8 74.7 1.2E+02 0.0027 32.2 18.3 62 323-390 404-465 (566)
345 COG2909 MalT ATP-dependent tra 74.6 1.4E+02 0.003 32.8 30.1 233 334-608 425-684 (894)
346 KOG1586 Protein required for f 74.4 66 0.0014 29.0 21.4 63 226-288 118-186 (288)
347 PF00637 Clathrin: Region in C 74.1 1.5 3.3E-05 36.4 1.1 104 528-638 22-129 (143)
348 PRK09687 putative lyase; Provi 73.3 85 0.0018 29.7 29.1 232 322-629 35-278 (280)
349 TIGR02508 type_III_yscG type I 72.9 39 0.00084 25.7 8.8 59 264-327 47-105 (115)
350 TIGR02508 type_III_yscG type I 72.9 39 0.00084 25.6 8.5 52 371-428 47-98 (115)
351 COG5187 RPN7 26S proteasome re 72.7 82 0.0018 29.3 11.3 73 548-620 115-192 (412)
352 PF06552 TOM20_plant: Plant sp 72.4 49 0.0011 28.4 9.3 29 414-444 96-124 (186)
353 COG3947 Response regulator con 71.4 63 0.0014 30.2 10.3 61 400-461 281-341 (361)
354 KOG2066 Vacuolar assembly/sort 71.2 1.6E+02 0.0034 31.9 28.4 152 120-283 363-532 (846)
355 TIGR03504 FimV_Cterm FimV C-te 70.3 13 0.00028 23.3 4.2 27 261-287 4-30 (44)
356 PF14561 TPR_20: Tetratricopep 69.6 29 0.00062 26.0 6.8 59 214-272 15-74 (90)
357 PF10579 Rapsyn_N: Rapsyn N-te 68.8 32 0.0007 24.8 6.4 58 75-138 11-68 (80)
358 PF00244 14-3-3: 14-3-3 protei 68.7 82 0.0018 28.8 11.0 58 227-284 7-65 (236)
359 PF07163 Pex26: Pex26 protein; 68.6 74 0.0016 29.5 10.2 56 401-456 121-181 (309)
360 PF11848 DUF3368: Domain of un 67.1 25 0.00053 22.5 5.2 34 593-626 12-45 (48)
361 KOG2063 Vacuolar assembly/sort 65.9 2.3E+02 0.0049 31.7 24.9 115 222-336 505-638 (877)
362 KOG4648 Uncharacterized conser 65.4 41 0.00089 32.0 8.1 86 303-397 111-197 (536)
363 PRK11619 lytic murein transgly 64.0 2.2E+02 0.0047 30.9 31.6 112 528-642 256-370 (644)
364 KOG4077 Cytochrome c oxidase, 63.4 56 0.0012 26.0 7.3 48 530-577 66-113 (149)
365 KOG4077 Cytochrome c oxidase, 63.1 59 0.0013 25.9 7.3 60 566-626 67-126 (149)
366 COG4455 ImpE Protein of avirul 62.7 68 0.0015 28.6 8.4 77 326-407 3-81 (273)
367 PF11846 DUF3366: Domain of un 62.4 45 0.00098 29.4 8.0 33 579-611 140-172 (193)
368 PF11207 DUF2989: Protein of u 61.5 1.2E+02 0.0025 26.9 12.8 78 558-637 117-197 (203)
369 PF14689 SPOB_a: Sensor_kinase 61.3 32 0.00069 23.5 5.2 29 362-390 22-50 (62)
370 PRK15180 Vi polysaccharide bio 60.4 1.4E+02 0.003 30.1 11.0 61 515-576 357-419 (831)
371 smart00028 TPR Tetratricopepti 59.9 12 0.00026 20.3 2.7 29 72-100 2-30 (34)
372 KOG0545 Aryl-hydrocarbon recep 59.2 90 0.002 28.4 8.7 105 113-249 178-292 (329)
373 PF10579 Rapsyn_N: Rapsyn N-te 58.2 50 0.0011 23.8 5.8 54 119-178 13-66 (80)
374 COG5108 RPO41 Mitochondrial DN 57.8 89 0.0019 32.8 9.6 46 553-598 33-80 (1117)
375 PRK10564 maltose regulon perip 57.2 23 0.00049 33.2 5.1 47 579-625 252-299 (303)
376 PF10366 Vps39_1: Vacuolar sor 56.7 92 0.002 24.3 7.7 28 222-249 40-67 (108)
377 KOG2062 26S proteasome regulat 56.5 2.9E+02 0.0062 29.9 26.3 111 86-211 38-151 (929)
378 PF06552 TOM20_plant: Plant sp 56.2 1.3E+02 0.0029 25.9 10.3 110 305-429 7-138 (186)
379 PF12862 Apc5: Anaphase-promot 55.6 50 0.0011 24.9 6.1 58 82-142 9-70 (94)
380 PF09670 Cas_Cas02710: CRISPR- 55.2 1.4E+02 0.003 29.8 10.7 61 118-184 136-198 (379)
381 KOG0890 Protein kinase of the 55.1 5.2E+02 0.011 32.4 32.1 151 226-387 1388-1542(2382)
382 PRK11619 lytic murein transgly 54.6 3.1E+02 0.0068 29.7 39.1 315 120-461 40-374 (644)
383 PF04190 DUF410: Protein of un 54.3 1.9E+02 0.0041 27.0 13.1 26 190-215 89-114 (260)
384 PF04097 Nic96: Nup93/Nic96; 53.9 2.1E+02 0.0046 30.8 12.5 23 75-97 115-137 (613)
385 PF14689 SPOB_a: Sensor_kinase 53.6 33 0.00072 23.4 4.3 23 588-610 28-50 (62)
386 PF13934 ELYS: Nuclear pore co 53.6 1.7E+02 0.0037 26.6 10.2 95 164-268 87-184 (226)
387 KOG2422 Uncharacterized conser 53.1 2.9E+02 0.0063 28.8 17.7 88 165-283 352-446 (665)
388 PF12862 Apc5: Anaphase-promot 53.0 37 0.0008 25.6 5.0 63 123-185 8-71 (94)
389 PF14853 Fis1_TPR_C: Fis1 C-te 52.9 36 0.00079 22.4 4.2 32 116-149 4-35 (53)
390 PF08311 Mad3_BUB1_I: Mad3/BUB 52.8 1.2E+02 0.0026 24.4 11.4 69 119-192 32-100 (126)
391 PF11663 Toxin_YhaV: Toxin wit 52.5 10 0.00022 30.5 1.8 33 80-112 104-136 (140)
392 PF14853 Fis1_TPR_C: Fis1 C-te 52.4 65 0.0014 21.2 5.4 32 225-258 5-36 (53)
393 PRK09687 putative lyase; Provi 51.8 2.2E+02 0.0047 27.0 25.5 198 222-443 69-277 (280)
394 PF10475 DUF2450: Protein of u 51.7 2.2E+02 0.0048 27.1 12.5 109 226-345 103-218 (291)
395 KOG1586 Protein required for f 51.0 1.9E+02 0.0042 26.2 19.2 17 336-352 166-182 (288)
396 PF04910 Tcf25: Transcriptiona 50.8 2.6E+02 0.0057 27.7 18.7 55 85-140 8-67 (360)
397 KOG4521 Nuclear pore complex, 50.7 3E+02 0.0065 31.5 12.5 25 552-576 1374-1398(1480)
398 PF11846 DUF3366: Domain of un 50.0 97 0.0021 27.2 8.0 52 595-646 120-172 (193)
399 PF04910 Tcf25: Transcriptiona 49.2 2.8E+02 0.006 27.5 18.7 151 125-284 6-167 (360)
400 cd00280 TRFH Telomeric Repeat 49.1 1.2E+02 0.0026 26.2 7.6 56 86-141 84-139 (200)
401 PF14669 Asp_Glu_race_2: Putat 48.7 1.8E+02 0.004 25.3 15.4 60 222-281 133-206 (233)
402 cd00280 TRFH Telomeric Repeat 48.7 1.4E+02 0.003 25.9 7.9 67 529-598 85-158 (200)
403 PF11848 DUF3368: Domain of un 48.1 72 0.0016 20.4 5.2 33 409-441 13-45 (48)
404 KOG2659 LisH motif-containing 47.9 2E+02 0.0043 26.0 9.1 56 554-609 70-129 (228)
405 PF11817 Foie-gras_1: Foie gra 47.7 99 0.0022 28.6 7.9 21 118-138 15-35 (247)
406 KOG3807 Predicted membrane pro 47.0 2.7E+02 0.0058 26.7 12.5 48 560-609 287-337 (556)
407 TIGR02710 CRISPR-associated pr 46.4 2.2E+02 0.0049 28.2 10.2 60 118-180 135-196 (380)
408 PF11817 Foie-gras_1: Foie gra 46.0 1.4E+02 0.0031 27.5 8.7 61 329-389 183-244 (247)
409 PF10255 Paf67: RNA polymerase 44.9 1.3E+02 0.0028 30.1 8.4 76 107-182 116-191 (404)
410 TIGR01503 MthylAspMut_E methyl 44.8 1.7E+02 0.0037 29.5 9.0 46 413-461 69-114 (480)
411 KOG4642 Chaperone-dependent E3 44.1 2.5E+02 0.0055 25.6 10.3 114 336-457 22-141 (284)
412 PF11663 Toxin_YhaV: Toxin wit 44.0 24 0.00052 28.4 2.7 32 233-266 107-138 (140)
413 PHA02875 ankyrin repeat protei 43.8 1.4E+02 0.003 30.3 9.1 54 558-619 175-231 (413)
414 KOG2063 Vacuolar assembly/sort 43.7 5.2E+02 0.011 29.1 16.6 38 559-596 695-745 (877)
415 PF11838 ERAP1_C: ERAP1-like C 43.7 3.1E+02 0.0067 26.5 13.0 108 306-422 147-261 (324)
416 KOG2908 26S proteasome regulat 43.5 3.1E+02 0.0068 26.5 10.8 92 553-644 80-183 (380)
417 KOG4642 Chaperone-dependent E3 43.0 2.6E+02 0.0057 25.5 10.1 79 123-211 20-98 (284)
418 cd08819 CARD_MDA5_2 Caspase ac 42.0 1.4E+02 0.0031 22.1 6.4 62 174-237 21-82 (88)
419 PRK10941 hypothetical protein; 40.9 2.5E+02 0.0054 26.4 9.3 62 222-285 182-244 (269)
420 KOG2581 26S proteasome regulat 40.6 3.8E+02 0.0083 26.7 16.7 100 79-181 134-235 (493)
421 KOG0376 Serine-threonine phosp 40.1 75 0.0016 32.0 6.0 98 168-269 17-118 (476)
422 PF09477 Type_III_YscG: Bacter 39.8 1.8E+02 0.0039 22.6 11.0 82 233-319 18-99 (116)
423 PF09670 Cas_Cas02710: CRISPR- 39.8 4E+02 0.0086 26.6 11.3 22 229-250 139-160 (379)
424 KOG0292 Vesicle coat complex C 39.1 1E+02 0.0022 33.7 7.0 58 563-620 1062-1121(1202)
425 KOG4567 GTPase-activating prot 38.6 2E+02 0.0044 27.2 8.0 71 532-607 262-342 (370)
426 PRK10564 maltose regulon perip 37.8 64 0.0014 30.4 4.9 41 546-586 254-295 (303)
427 COG5108 RPO41 Mitochondrial DN 36.4 2.7E+02 0.0058 29.6 9.2 93 329-426 33-131 (1117)
428 COG0735 Fur Fe2+/Zn2+ uptake r 36.2 1.9E+02 0.0042 24.0 7.1 59 573-632 11-69 (145)
429 PF13762 MNE1: Mitochondrial s 36.1 2.5E+02 0.0055 23.3 12.3 83 327-409 42-126 (145)
430 TIGR01503 MthylAspMut_E methyl 36.0 3.8E+02 0.0083 27.2 9.9 140 206-351 29-196 (480)
431 COG5187 RPN7 26S proteasome re 35.9 3.8E+02 0.0082 25.2 15.0 136 288-426 78-220 (412)
432 PF10366 Vps39_1: Vacuolar sor 35.7 2.1E+02 0.0046 22.3 7.4 26 586-611 42-67 (108)
433 PF10475 DUF2450: Protein of u 35.6 4E+02 0.0086 25.4 10.3 113 330-457 104-221 (291)
434 KOG2471 TPR repeat-containing 34.8 1.3E+02 0.0027 30.5 6.5 129 71-202 240-380 (696)
435 COG0735 Fur Fe2+/Zn2+ uptake r 34.7 1.8E+02 0.0039 24.2 6.7 65 384-449 7-71 (145)
436 PRK11639 zinc uptake transcrip 34.4 2.1E+02 0.0045 24.6 7.3 64 537-601 15-78 (169)
437 PF09454 Vps23_core: Vps23 cor 33.4 1.7E+02 0.0036 20.3 5.3 51 359-410 4-54 (65)
438 KOG2034 Vacuolar sorting prote 33.2 7.3E+02 0.016 27.7 30.1 59 546-606 626-684 (911)
439 PF09454 Vps23_core: Vps23 cor 32.6 63 0.0014 22.4 3.0 47 547-594 7-53 (65)
440 KOG2223 Uncharacterized conser 31.9 4.7E+02 0.01 26.2 9.5 55 533-590 459-513 (586)
441 PF14669 Asp_Glu_race_2: Putat 31.8 3.6E+02 0.0077 23.7 11.0 152 73-246 53-206 (233)
442 KOG4814 Uncharacterized conser 31.7 3.2E+02 0.007 28.9 8.9 92 119-214 360-451 (872)
443 PRK10941 hypothetical protein; 31.7 4.4E+02 0.0096 24.8 11.0 80 550-631 183-264 (269)
444 KOG2471 TPR repeat-containing 31.6 5.9E+02 0.013 26.2 13.8 80 550-631 285-382 (696)
445 smart00777 Mad3_BUB1_I Mad3/BU 31.0 2.8E+02 0.0062 22.3 9.8 29 158-188 68-96 (125)
446 PRK14958 DNA polymerase III su 30.2 6.6E+02 0.014 26.4 12.6 76 540-618 192-280 (509)
447 PF00244 14-3-3: 14-3-3 protei 30.2 4.4E+02 0.0094 24.2 12.5 47 565-611 143-197 (236)
448 KOG0551 Hsp90 co-chaperone CNS 30.0 4.7E+02 0.01 25.3 9.0 104 67-183 77-181 (390)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 29.8 3E+02 0.0065 22.2 8.4 43 307-349 81-124 (126)
450 PRK12402 replication factor C 29.2 5.4E+02 0.012 25.0 12.2 75 541-618 199-287 (337)
451 PF04090 RNA_pol_I_TF: RNA pol 29.2 3.7E+02 0.008 23.8 7.8 63 547-610 40-103 (199)
452 KOG4507 Uncharacterized conser 28.9 4.6E+02 0.0099 27.6 9.3 88 375-463 619-706 (886)
453 PRK11639 zinc uptake transcrip 28.9 3.3E+02 0.0071 23.4 7.6 35 530-564 42-76 (169)
454 COG4941 Predicted RNA polymera 28.9 5.5E+02 0.012 24.9 10.9 127 79-216 264-390 (415)
455 PF11838 ERAP1_C: ERAP1-like C 28.8 5.3E+02 0.012 24.8 18.5 19 166-184 141-159 (324)
456 PF02847 MA3: MA3 domain; Int 28.8 2.8E+02 0.006 21.5 7.5 62 225-288 6-69 (113)
457 KOG2005 26S proteasome regulat 28.8 7.6E+02 0.016 26.6 24.6 139 512-651 502-652 (878)
458 KOG4279 Serine/threonine prote 28.4 8.1E+02 0.018 26.8 11.9 201 238-468 180-401 (1226)
459 PF04190 DUF410: Protein of un 28.1 5E+02 0.011 24.2 18.9 132 312-462 37-170 (260)
460 PF07064 RIC1: RIC1; InterPro 28.1 5E+02 0.011 24.2 15.2 64 588-651 184-253 (258)
461 PRK08691 DNA polymerase III su 27.9 8.4E+02 0.018 26.8 12.1 74 541-617 193-279 (709)
462 PRK09462 fur ferric uptake reg 27.9 3.1E+02 0.0068 22.8 7.2 63 537-600 6-69 (148)
463 PF10255 Paf67: RNA polymerase 27.6 4.7E+02 0.01 26.3 9.2 59 225-283 126-191 (404)
464 PF12968 DUF3856: Domain of Un 27.4 3.2E+02 0.007 21.8 12.0 67 583-649 55-131 (144)
465 KOG1308 Hsp70-interacting prot 27.1 58 0.0013 31.1 2.8 44 168-213 127-170 (377)
466 cd08819 CARD_MDA5_2 Caspase ac 26.7 2.7E+02 0.0059 20.7 7.7 36 595-635 48-83 (88)
467 PRK10304 ferritin; Provisional 26.5 4.1E+02 0.0089 22.7 8.8 105 305-422 51-155 (165)
468 PF09868 DUF2095: Uncharacteri 26.2 3E+02 0.0064 21.6 5.8 39 589-628 67-105 (128)
469 KOG4567 GTPase-activating prot 25.9 4.1E+02 0.0088 25.4 7.7 33 359-391 274-306 (370)
470 PRK14951 DNA polymerase III su 25.7 8.7E+02 0.019 26.3 11.8 76 540-618 197-285 (618)
471 PF12926 MOZART2: Mitotic-spin 25.7 2.8E+02 0.0061 20.5 8.3 42 534-575 29-70 (88)
472 cd07153 Fur_like Ferric uptake 25.7 1.5E+02 0.0032 23.3 4.7 47 554-600 6-52 (116)
473 PF15297 CKAP2_C: Cytoskeleton 25.4 6.4E+02 0.014 24.6 9.9 46 364-409 141-186 (353)
474 PF04762 IKI3: IKI3 family; I 25.0 1.1E+03 0.024 27.2 16.1 26 327-352 815-842 (928)
475 PRK13342 recombination factor 25.0 7.3E+02 0.016 25.1 20.4 55 376-430 243-302 (413)
476 PF12793 SgrR_N: Sugar transpo 24.7 3.4E+02 0.0073 21.5 6.3 21 587-607 74-94 (115)
477 PRK09462 fur ferric uptake reg 24.7 4.1E+02 0.0089 22.1 7.7 60 505-564 7-68 (148)
478 PHA02537 M terminase endonucle 24.3 2.3E+02 0.0051 25.7 6.0 28 81-108 93-121 (230)
479 KOG4507 Uncharacterized conser 24.2 6.6E+02 0.014 26.5 9.4 144 289-444 569-721 (886)
480 KOG0686 COP9 signalosome, subu 23.9 7.4E+02 0.016 24.8 15.6 66 71-141 150-215 (466)
481 KOG2659 LisH motif-containing 23.7 5.6E+02 0.012 23.3 10.2 99 359-459 22-129 (228)
482 PF01475 FUR: Ferric uptake re 23.7 1.2E+02 0.0026 24.1 3.8 45 589-633 13-57 (120)
483 KOG1308 Hsp70-interacting prot 23.4 1.2E+02 0.0027 29.1 4.2 90 203-294 126-220 (377)
484 KOG0376 Serine-threonine phosp 23.4 1.9E+02 0.0042 29.3 5.6 105 332-445 12-117 (476)
485 PF15297 CKAP2_C: Cytoskeleton 23.0 7.2E+02 0.016 24.3 10.1 64 564-629 119-186 (353)
486 PF09986 DUF2225: Uncharacteri 22.6 5.7E+02 0.012 23.0 11.9 63 366-428 121-195 (214)
487 PHA02875 ankyrin repeat protei 22.6 4.1E+02 0.0089 26.8 8.4 74 203-280 11-89 (413)
488 KOG1497 COP9 signalosome, subu 22.5 7E+02 0.015 24.0 15.8 110 72-186 104-215 (399)
489 PF14852 Fis1_TPR_N: Fis1 N-te 22.1 1.8E+02 0.004 17.1 4.2 30 621-650 4-33 (35)
490 COG4003 Uncharacterized protei 21.9 3.2E+02 0.0069 19.8 5.4 31 588-619 36-66 (98)
491 PF02607 B12-binding_2: B12 bi 21.7 3.1E+02 0.0066 19.5 6.2 51 82-133 12-62 (79)
492 KOG1785 Tyrosine kinase negati 21.7 1.4E+02 0.0031 28.9 4.2 9 6-14 499-507 (563)
493 KOG0292 Vesicle coat complex C 21.5 2.8E+02 0.0062 30.6 6.7 44 168-218 656-699 (1202)
494 cd07153 Fur_like Ferric uptake 21.5 2.3E+02 0.005 22.2 5.0 37 529-565 16-52 (116)
495 COG0320 LipA Lipoate synthase 21.5 1E+02 0.0022 28.5 3.2 50 269-320 193-242 (306)
496 COG2178 Predicted RNA-binding 21.4 5.7E+02 0.012 22.5 11.7 77 305-392 19-98 (204)
497 PRK08691 DNA polymerase III su 21.4 1.1E+03 0.024 25.9 11.7 69 577-651 194-275 (709)
498 COG5178 PRP8 U5 snRNP spliceos 21.3 70 0.0015 35.8 2.5 22 29-50 9-30 (2365)
499 PF03745 DUF309: Domain of unk 20.9 2.9E+02 0.0062 18.9 5.2 57 78-136 6-62 (62)
500 PRK14700 recombination factor 20.9 7.4E+02 0.016 23.7 14.3 142 510-651 62-234 (300)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.9e-63 Score=527.81 Aligned_cols=508 Identities=18% Similarity=0.280 Sum_probs=462.1
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
+...|..++..|++.|++++|+++|+.|.+.|..+.. .-.+..++..+.+.|..++|..+++.|.+ |+..
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~------~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMD------KIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCch------HHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 4778899999999999999999999999998754321 22335567778899999999999998874 6554
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCC-----CCCccH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-----RADILF 224 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~ 224 (651)
+++.++.+|+. .|++++|..++++|...|..| +...++.++.+|++.|++++|.++|+.+. ++..+|
T Consensus 439 ----Tyn~LL~a~~k---~g~~e~A~~lf~~M~~~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 439 ----TFNMLMSVCAS---SQDIDGALRVLRLVQEAGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510 (1060)
T ss_pred ----HHHHHHHHHHh---CcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 66777775544 899999999999999998765 56779999999999999999999999874 567999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCcccHHHHHHHHHhhc
Q 006303 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS--QNVTLNIYVFNSLMNVNA 302 (651)
Q Consensus 225 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~~~ 302 (651)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|++++.+++
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 688999999999999876
Q ss_pred --CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 303 --HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 303 --~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ .| +.||..+|+.++.+|++.|+++
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~---~G-v~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK---KG-VKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHhCCCHH
Confidence 79999999999999999999999999999999999999999999999987 45 7999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
+|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh--cHHHHHHHHHH
Q 006303 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNE 538 (651)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~ 538 (651)
..+ +.||..||+.+|.+|++ +.+.|.++|++
T Consensus 747 ~~G-----------------------------------------------i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 747 RLG-----------------------------------------------LCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HcC-----------------------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 665 59999999999999985 79999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhc----C-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 539 MRTVGLSPNHISWTILIDACGG----S-------------------GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (651)
Q Consensus 539 ~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (651)
|.+.|+.||..+|+.++..|.+ + +..+.|..+|++|++.|+.||..||+.++.++++
T Consensus 780 M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~ 859 (1060)
T PLN03218 780 AKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQL 859 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Confidence 9999999999999999976432 1 2346799999999999999999999999988889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Q 006303 596 SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (651)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~~g 651 (651)
.+..+.+.++++.|...+..|+..+|+++|.++.+. ..+++.+|++|.+.|
T Consensus 860 ~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~-----~~~A~~l~~em~~~G 910 (1060)
T PLN03218 860 PHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY-----DPRAFSLLEEAASLG 910 (1060)
T ss_pred cccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC-----hHHHHHHHHHHHHcC
Confidence 999999999999999889999999999999998433 245777999999887
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.3e-63 Score=539.43 Aligned_cols=526 Identities=19% Similarity=0.246 Sum_probs=419.6
Q ss_pred ccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHh--hhh--------------------------HHHHHhH
Q 006303 68 SSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFAS--MLS--------------------------LEMVASG 119 (651)
Q Consensus 68 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~~--------------------------~~~~~~~ 119 (651)
.++...++.++..+++.|++++|..+|+.|.+.|..|+..+. ++. ....+.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 335677889999999999999999999999888766654332 111 1233667
Q ss_pred HHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHH
Q 006303 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (651)
Q Consensus 120 ~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (651)
+..|.+.|+++.|..+|++|.+ |+.. .++.++. .+.+.|++++|+.+|++|...|..|+ ...+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~----~~n~li~---~~~~~g~~~~A~~~f~~M~~~g~~Pd-~~t~~~ll~ 195 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLF----SWNVLVG---GYAKAGYFDEALCLYHRMLWAGVRPD-VYTFPCVLR 195 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCee----EHHHHHH---HHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Confidence 7888899999999999998874 4443 5566666 44458999999999999998887664 455788899
Q ss_pred HHhcCCChHHHHHHhhhC-----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006303 200 LCVNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (651)
+|...++...+.+++..+ .++..++++|+.+|++.|++++|.++|++|.+ ||..+||.++.+|.+.|++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLE 271 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHH
Confidence 999999999888887764 45678999999999999999999999999975 889999999999999999999
Q ss_pred HHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 275 a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
|+++|++|.+.|+.||..+|+.++.+++ ++.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 350 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME- 350 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-
Confidence 9999999999999999999999999876 7999999999999999999999999999999999999999999999985
Q ss_pred hhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
.||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+
T Consensus 351 -------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~ 423 (857)
T PLN03077 351 -------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423 (857)
T ss_pred -------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhccccccccccc-----CCchhhhhhhhhhccccccCCCCccCCCccccccc
Q 006303 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY-----DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (651)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (651)
..+|+.|+++|++.|++++|.++|++|.+.+.. .+.... .+..... ..++..|.
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v-s~~~mi~~~~~~g~~~eA--------------------~~lf~~m~ 482 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVI-SWTSIIAGLRLNNRCFEA--------------------LIFFRQML 482 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee-eHHHHHHHHHHCCCHHHH--------------------HHHHHHHH
Confidence 999999999999999999999999999865432 111100 0000000 01112222
Q ss_pred ccccCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHH------------------------------HHHHHH
Q 006303 508 RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI------------------------------SWTILI 555 (651)
Q Consensus 508 ~~~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~------------------------------~~~~li 555 (651)
.++.||..||+.+|.+|++ +.+.+.+++..+.+.|+.+|.. +||++|
T Consensus 483 -~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 483 -LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred -hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence 1469999999999999985 7899999999999998865554 455555
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCH
Q 006303 556 DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITLLRARSRYGSL 634 (651)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~ 634 (651)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++.+|++.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 5555555555555556666555556666666666666666666666666666665 455566666666666666666665
Q ss_pred HHHHH
Q 006303 635 HEVQQ 639 (651)
Q Consensus 635 ~~a~~ 639 (651)
++|.+
T Consensus 642 ~eA~~ 646 (857)
T PLN03077 642 TEAYN 646 (857)
T ss_pred HHHHH
Confidence 55444
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-61 Score=516.50 Aligned_cols=469 Identities=21% Similarity=0.372 Sum_probs=425.6
Q ss_pred HHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHH
Q 006303 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (651)
Q Consensus 116 ~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (651)
+..++..+++.|++++|+++|++|.+.|+.+... .....++..|. +.|..++|+.+++.|.. ++...+.
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~---v~~~~li~~~~---~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDK---IYHAKFFKACK---KQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHH---HCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 3455667789999999999999999988654221 23344555443 47999999999998864 4567899
Q ss_pred HHHHHHhcCCChHHHHHHhhhC-----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcC
Q 006303 196 RIVQLCVNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (651)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (651)
.++.+|++.|++++|.++|+.+ .++..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999886 35668999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHH--CCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 006303 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEI 346 (651)
Q Consensus 271 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (651)
++++|.++|++|.+.|+.||..+|+.+|.+++ |++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999877 799999999999976 67899999999999999999999999999
Q ss_pred HHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
|+.|.+ .| ++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 602 f~~M~e---~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 602 YQMIHE---YN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHH---cC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999987 44 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccc
Q 006303 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506 (651)
Q Consensus 427 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (651)
.|+.|+..+|+.+|.+|++.|++++|.++|++|...+
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g------------------------------------------- 714 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------------------------- 714 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------------------------------------
Confidence 9999999999999999999999999999999997654
Q ss_pred cccccCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH
Q 006303 507 KRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (651)
Q Consensus 507 ~~~~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 584 (651)
+.||..+||.+|.+|++ +.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus 715 ----~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 715 ----LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred ----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 48999999999999985 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 585 AYTTAIKVCVR----S-------------------KRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (651)
Q Consensus 585 ~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 641 (651)
+|+.++..|.+ + +..++|..+|++|++.|+.||..||+.++.++++.+..+.+..
T Consensus 791 tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~-- 868 (1060)
T PLN03218 791 MCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNR-- 868 (1060)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHH--
Confidence 99999876542 1 2246899999999999999999999999988888888777555
Q ss_pred HHHHHHHh
Q 006303 642 AVYQDMWK 649 (651)
Q Consensus 642 ~~~~~m~~ 649 (651)
+++.|..
T Consensus 869 -m~~~m~~ 875 (1060)
T PLN03218 869 -LIENLGI 875 (1060)
T ss_pred -HHHHhcc
Confidence 5555543
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-61 Score=526.80 Aligned_cols=499 Identities=17% Similarity=0.228 Sum_probs=360.5
Q ss_pred cchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhH----------------------------HHHHhHH
Q 006303 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSL----------------------------EMVASGI 120 (651)
Q Consensus 69 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~----------------------------~~~~~~~ 120 (651)
++..+|+.++.+|++.|++++|+++|++|...|+.|+.++..... .+++.++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 457799999999999999999999999999999999865442221 1234455
Q ss_pred HHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHH
Q 006303 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (651)
Q Consensus 121 ~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (651)
..|++.|++++|..+|++|.+ |+.. .++.++. .|.+.|++++|+++|++|...++.|+ ...+..++.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~----~d~~----s~n~li~---~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a 297 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR----RDCI----SWNAMIS---GYFENGECLEGLELFFTMRELSVDPD-LMTITSVISA 297 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCcc----hhHHHHH---HHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Confidence 556666666666666666543 2222 3344444 33335666666666666666665443 3445566666
Q ss_pred HhcCCChHHHHHHhhhC-----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHH
Q 006303 201 CVNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (651)
Q Consensus 201 ~~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 275 (651)
|.+.|+.+.|.+++..+ .++..+|++|+.+|++.|++++|.++|++|.+ ||..+|+.++.+|.+.|++++|
T Consensus 298 ~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHH
Confidence 66666666666665543 34456666666666666666666666666643 5666666666666666666666
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006303 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (651)
Q Consensus 276 ~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 353 (651)
+++|++|.+.|+.||..+|+.++.+++ |+++.+.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|+.|.
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 451 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-- 451 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC--
Confidence 666666666666666666666666554 4666666666666666666666666666666666666666666666654
Q ss_pred hhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006303 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (651)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 433 (651)
.+|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++.
T Consensus 452 ------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 452 ------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred ------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 24666666666666666666666666666654 36666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCC
Q 006303 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (651)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (651)
.+++.|+++|+++|++++|.++|+.+ .|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~----------------------------------------------------~~ 552 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH----------------------------------------------------EK 552 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc----------------------------------------------------CC
Confidence 66666666666666666666666543 68
Q ss_pred CHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH-HCCCCCCHHHHHHHH
Q 006303 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR-EDGMSPDVVAYTTAI 590 (651)
Q Consensus 514 ~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~li 590 (651)
|..+||++|.+|++ +.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999985 789999999999999999999999999999999999999999999999 689999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006303 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647 (651)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m 647 (651)
.+|++.|++++|.+++++| .++||..+|++|+.+|..+|+.+.++.+.+.+-+|
T Consensus 633 ~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 9999999999999999999 58999999999999999999998887766555444
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-58 Score=494.02 Aligned_cols=465 Identities=17% Similarity=0.237 Sum_probs=404.6
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhc-CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
...++.++..+.+.|++++|+++|+.|...+ ..|+ ..+++.++..+.+.++++.+..++..|.+.|+.|+..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~-------~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP-------ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 4477888888888888888888888887654 4455 4455667777778888888888888888777777655
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (651)
+++.++. .|.+.|++++|.++|++|.. ++..+|++++.
T Consensus 160 ----~~n~Li~---~y~k~g~~~~A~~lf~~m~~-----------------------------------~~~~t~n~li~ 197 (697)
T PLN03081 160 ----MMNRVLL---MHVKCGMLIDARRLFDEMPE-----------------------------------RNLASWGTIIG 197 (697)
T ss_pred ----HHHHHHH---HHhcCCCHHHHHHHHhcCCC-----------------------------------CCeeeHHHHHH
Confidence 3344444 33346777777777776632 23478999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHH
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (651)
+|++.|++++|+++|++|.+.|..|+..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|++++..|+ |++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
|.++|++|.. +|..+||.++.+|++.|++++|.++|++|.+ .| +.||..+|+.++.+|++.|++++|.+++.
T Consensus 278 A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 278 ARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD---SG-VSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999964 6899999999999999999999999999986 44 78999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccc
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 467 (651)
.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+||.||.+|++.|+.++|.++|++|...+
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---- 421 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG---- 421 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999999999999999996 5788999999999999999999999999998765
Q ss_pred cccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHH-cCC
Q 006303 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT-VGL 544 (651)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~-~~~ 544 (651)
+.||..||+++|.+|++ ..++|.++|+.|.+ .|+
T Consensus 422 -------------------------------------------~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 422 -------------------------------------------VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred -------------------------------------------CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 49999999999999984 78999999999976 699
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 006303 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYIT 623 (651)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 623 (651)
.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|.++++++. ++.|+ ..+|..
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~ 533 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVV 533 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHH
Confidence 999999999999999999999999998776 478999999999999999999999999999997 45564 679999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcC
Q 006303 624 LLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (651)
Q Consensus 624 l~~~~~~~g~~~~a~~~~~~~~~m~~~g 651 (651)
+++.|++.|++++|.+ +++.|.++|
T Consensus 534 L~~~y~~~G~~~~A~~---v~~~m~~~g 558 (697)
T PLN03081 534 LLNLYNSSGRQAEAAK---VVETLKRKG 558 (697)
T ss_pred HHHHHHhCCCHHHHHH---HHHHHHHcC
Confidence 9999999999999777 777888766
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.5e-57 Score=481.55 Aligned_cols=426 Identities=17% Similarity=0.232 Sum_probs=395.8
Q ss_pred HHhHHHHhhhhcChhHHHHHHHHHHHcC-CCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchH
Q 006303 116 VASGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (651)
Q Consensus 116 ~~~~~~~~~~~g~~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 194 (651)
++.++..+.+.|++++|+++|+.|...+ ..|+.. +++.++.+|.. .++.+.+.+++..+...|..|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~----t~~~ll~a~~~---~~~~~~a~~l~~~m~~~g~~~------ 156 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPAS----TYDALVEACIA---LKSIRCVKAVYWHVESSGFEP------ 156 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHh---CCCHHHHHHHHHHHHHhCCCc------
Confidence 3556788899999999999999998764 566554 56667775554 788999999999998887654
Q ss_pred HHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006303 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (651)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (651)
+..+|+.|+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++
T Consensus 157 -------------------------~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~ 207 (697)
T PLN03081 157 -------------------------DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYRE 207 (697)
T ss_pred -------------------------chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHH
Confidence 347899999999999999999999999975 899999999999999999999
Q ss_pred HHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 275 a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
|.++|++|.+.|+.|+..+|+.++.+++ +..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|+.|.
T Consensus 208 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 286 (697)
T PLN03081 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP- 286 (697)
T ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-
Confidence 9999999999999999999999999877 6889999999999999999999999999999999999999999999985
Q ss_pred hhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
++|..+||.|+.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+
T Consensus 287 -------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 287 -------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred -------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccC
Q 006303 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (651)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (651)
..+|+.|+++|+++|++++|.++|++|. .
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~---------------------------------------------------~ 388 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMP---------------------------------------------------R 388 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------------------------C
Confidence 9999999999999999999999999885 6
Q ss_pred CCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 006303 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTA 589 (651)
Q Consensus 513 ~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l 589 (651)
||..+||++|.+|++ +.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 889999999999985 7999999999999999999999999999999999999999999999986 6999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
+.+|++.|++++|.+++++| ++.||..+|++++.+|...|+++.|+++.+.+.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99999999999999999887 689999999999999999999999988665543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.1e-28 Score=270.66 Aligned_cols=533 Identities=13% Similarity=0.032 Sum_probs=401.7
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+.+.+...|.. ...+..++..+...|++++|+..|+++.+. .|.. ...+..++..+...|++++|+..+++
T Consensus 352 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 352 LSPALGLDPDD-PAALSLLGEAYLALGDFEKAAEYLAKATEL--DPEN------AAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 33444445555 778889999999999999999999999887 5542 33445567778899999999999999
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
+.+.. |+.. .. .......+.+.|++++|+.+++++.... |++...+..++..+...|++++|.+.|..+
T Consensus 423 a~~~~--~~~~---~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 423 AAQLD--PELG---RA---DLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHhhC--Ccch---hh---HHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 98743 3221 11 1112234556899999999999887744 667778888899999999999999888764
Q ss_pred ---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 006303 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (651)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 294 (651)
|.+..++..++..+...|++++|.+.|+++.+.+. .+..++..+...+.+.|++++|...++++.+.+. .+...+
T Consensus 493 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 570 (899)
T TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPA 570 (899)
T ss_pred hhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHH
Confidence 55567788888899999999999999999887542 4677888888888899999999999998877643 244455
Q ss_pred HHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHH
Q 006303 295 NSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (651)
Q Consensus 295 ~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (651)
..+...+. |+++.|..+++.+.... +.+...|..+..++...|++++|...|+.+.+. .+.+...+..+..+
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-----QPDSALALLLLADA 644 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHH
Confidence 55555543 78899999999887653 456778888889999999999999999888763 23456678888888
Q ss_pred HHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 006303 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (651)
Q Consensus 373 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (651)
+...|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 889999999999998888764 3367788888888888999999999998888775 55667788888888888999999
Q ss_pred HHHHHHhhhcccccccccc------cCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh
Q 006303 453 FRLFRSWTLSKTQVALGED------YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526 (651)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 526 (651)
.+.|+.+............ ..+.......... .... ..+.+...+..+...+.
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------~~l~--~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE-------------------AWLK--THPNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH-------------------HHHH--hCCCCHHHHHHHHHHHH
Confidence 9998887765432210000 0000000000000 0000 01345667777777665
Q ss_pred --hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 527 --TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604 (651)
Q Consensus 527 --~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 604 (651)
++.++|..+|+++.+.. +.+..+++.+...+...|+ .+|..+++++.+.. +-+..++..+...+.+.|++++|.+
T Consensus 782 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999999864 3578889999999999999 88999999998853 2356677889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006303 605 LFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (651)
Q Consensus 605 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~ 648 (651)
+++++.+.+- .+..++..+..++.+.|+.++|.+ ++++|+
T Consensus 859 ~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~ 898 (899)
T TIGR02917 859 LLRKAVNIAP-EAAAIRYHLALALLATGRKAEARK---ELDKLL 898 (899)
T ss_pred HHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHH---HHHHHh
Confidence 9999998763 388999999999999999999887 566554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-27 Score=266.44 Aligned_cols=540 Identities=12% Similarity=0.062 Sum_probs=411.2
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+.+.+...|.. ...+..++..+...|++++|+..++.+... .|. ....+..++..+...|++++|...|++
T Consensus 318 ~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 318 LNQILKYAPNS-HQARRLLASIQLRLGRVDEAIATLSPALGL--DPD------DPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44445555665 777888999999999999999999999877 443 234455677789999999999999999
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
+.+. .|+.. ..+......+...|++++|+..++.+.... |........++..+.+.|++++|..++..+
T Consensus 389 ~~~~--~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 389 ATEL--DPENA------AARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHhc--CCCCH------HHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9884 44332 122223334556899999999999998755 555666777888999999999999988765
Q ss_pred ---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 006303 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (651)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 294 (651)
|.+..++..++..|...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+.+.+.+. .+...+
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 536 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAI 536 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHH
Confidence 56678899999999999999999999999987532 3566788899999999999999999999987653 355666
Q ss_pred HHHHHhh--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHH
Q 006303 295 NSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (651)
Q Consensus 295 ~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (651)
..+...+ .|+.++|...++++...+ +.+...+..+...+...|++++|.++++.+... .+.+...|..+..+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~ 610 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-----APDSPEAWLMLGRA 610 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHH
Confidence 6666654 489999999999998765 456778888999999999999999999999863 35677899999999
Q ss_pred HHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 006303 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (651)
Q Consensus 373 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (651)
|...|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998764 3467788999999999999999999999998864 55678899999999999999999
Q ss_pred HHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHH
Q 006303 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYY 530 (651)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~ 530 (651)
.++++.+..............+ .+....+... ..+..+.+.....|+..++..+...+. ++.+
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~------------~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 689 KKIAKSLQKQHPKAALGFELEG---DLYLRQKDYP------------AAIQAYRKALKRAPSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHHHhhCcCChHHHHHHH---HHHHHCCCHH------------HHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHH
Confidence 9999998766432111100000 0000000000 000001111112454455555666655 4788
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 531 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
+|...++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. +.+...++.+...+...|+ .+|+++++++.
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 8888888887753 3467788888888888899999999999888764 3467788888888888888 77999888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 006303 611 HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (651)
Q Consensus 611 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~ 649 (651)
+.. +-+..++..+..++.+.|++++|.+ .|+++++
T Consensus 831 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~---~~~~a~~ 865 (899)
T TIGR02917 831 KLA-PNIPAILDTLGWLLVEKGEADRALP---LLRKAVN 865 (899)
T ss_pred hhC-CCCcHHHHHHHHHHHHcCCHHHHHH---HHHHHHh
Confidence 642 3345667778888888999888766 6666654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.1e-20 Score=213.06 Aligned_cols=558 Identities=12% Similarity=0.035 Sum_probs=343.3
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHH----------HHHhHHHHhhhhcC
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLE----------MVASGIVKSIREGR 128 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~----------~~~~~~~~~~~~g~ 128 (651)
+.+.+..+|+. +..+..++..+...|+.++|.+.++++.+. .|+......... .....+..+...|+
T Consensus 51 l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 51 LYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 55556667887 889999999999999999999999999998 554422211111 11234556889999
Q ss_pred hhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChH
Q 006303 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN 208 (651)
Q Consensus 129 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (651)
+++|+..|+++.+.. |.... .... +.... ....|+.++|++.|+++.+.. |.+...+..++..+...|+.+
T Consensus 128 ~~eA~~~~~~~l~~~--p~~~~--la~~-y~~~~--~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 128 TEEALASYDKLFNGA--PPELD--LAVE-YWRLV--AKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHHHHHHHHccCC--CCChH--HHHH-HHHHH--hhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHH
Confidence 999999999999742 32210 0111 11111 123599999999999999865 788888899999999999999
Q ss_pred HHHHHhhhCCCCC--------------------------------------cc--------------------HHHHHHH
Q 006303 209 LAIRYACIVPRAD--------------------------------------IL--------------------FCNFVRE 230 (651)
Q Consensus 209 ~A~~~~~~~~~~~--------------------------------------~~--------------------~~~l~~~ 230 (651)
+|+..++++.... .. .......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 9998877641100 00 0012445
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHHHH----------
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMN---------- 299 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~---------- 299 (651)
+...|++++|+..|++..+... .+..++..+..++.+.|++++|+..|++..+..... ....|..++.
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 6778999999999999988432 367889999999999999999999999998764332 2222222211
Q ss_pred ----hhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc
Q 006303 300 ----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (651)
Q Consensus 300 ----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (651)
...|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHH-
Confidence 13479999999999998864 3466778889999999999999999999998741 233444444444442
Q ss_pred ccCHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006303 376 AKWWQMALKVKEDMLSAGV--------TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (651)
.++.++|..+++.+..... ......+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 2344555544443321100 0001123344444455555555555555554442 223334444444555555
Q ss_pred ChhHHHHHHHHhhhcccccccccc-------cCCch----hhhhhh------------hhhcc-ccccCCCCc-cCCCc-
Q 006303 448 QFDRAFRLFRSWTLSKTQVALGED-------YDGNT----DRISNM------------EHKDK-QSITNTPNF-VPNSH- 501 (651)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~------------~~~~~-~~~~~~~~~-~~~~~- 501 (651)
++++|...++++............ ..+.. ..+..+ ..... ......... .....
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 555555555544432211000000 00000 000000 00000 000000000 00000
Q ss_pred --ccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 502 --YSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 502 --~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
....++. .+.+...+..+...+. ++.++|...|+.+.+.. +.+...+..++..|...|++++|.+.++.+.+.
T Consensus 590 ~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 590 AEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 0001111 1223344444444443 47899999999988853 235778888999999999999999999988764
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 578 GMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI--QP---NLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 578 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
.| +...+..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|.+.++
T Consensus 667 --~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 667 --ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred --CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33 455667788888899999999999999875421 22 23466667788889999988887554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=5.4e-20 Score=207.36 Aligned_cols=460 Identities=12% Similarity=0.042 Sum_probs=307.2
Q ss_pred ccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCC-----------------
Q 006303 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA----------------- 145 (651)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~----------------- 145 (651)
..|++++|+..|+++++. .|+. ..+...++..+...|++++|+..|+++.+....
T Consensus 159 ~~g~~~~A~~~L~~ll~~--~P~~------~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~ 230 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNAD--YPGN------TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPV 230 (1157)
T ss_pred CCccHHHHHHHHHHHHHh--CCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCC
Confidence 458888999999998888 5652 334456677788899999999999888653210
Q ss_pred ---------------ccccccchhhHHHH--------------HHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 146 ---------------PLELFDGSGFKLLK--------------NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 146 ---------------~~~~~~~~~~~~l~--------------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
|+..........+. .....+...|++++|+..|++.+... |.+...+..
T Consensus 231 ~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~ 308 (1157)
T PRK11447 231 SDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGA 308 (1157)
T ss_pred ChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 00000000000000 00223455799999999999998854 778888899
Q ss_pred HHHHHhcCCChHHHHHHhhhC----CCCCc--cH------------HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHh
Q 006303 197 IVQLCVNKPDVNLAIRYACIV----PRADI--LF------------CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI 258 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~--~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 258 (651)
++.++.+.|++++|...|++. |.+.. .+ ......+.+.|++++|++.|+++.+... .+...
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a 387 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYA 387 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 999999999999999988764 32221 11 1235567788999999999999988532 35667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc-CChHHHHHHHHHHHHCCC--------CCCHHhHHH
Q 006303 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGV--------MADMASYNI 329 (651)
Q Consensus 259 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~--------~~~~~~~~~ 329 (651)
+..+..++...|++++|++.|++..+.... +...+..+...+. ++.++|..+++.+..... ......+..
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 888889999999999999999998876432 3334444444433 466777777765533210 001223445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 409 (651)
+...+...|++++|++.|++..+. .+-+...+..+...|.+.|++++|...++++.+... .+...+..+...+.
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~-----~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~ 540 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLAL-----DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 666777788888888888888763 133455667778888888888888888888776532 24444444444455
Q ss_pred hcCCHHHHHHHHHHHHHcC---------------------------------------CCCCHHHHHHHHHHHHhcCChh
Q 006303 410 NAGLVEQAMHLFEEMLQAG---------------------------------------CEPNSQCCNILLQACVEACQFD 450 (651)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~---------------------------------------~~~~~~~~~~ll~~~~~~g~~~ 450 (651)
..++.++|...++.+.... .+.+...+..+...+.+.|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 5666666666665543221 1233334444444455555555
Q ss_pred HHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCC-CHHHHHHHHHHHh--h
Q 006303 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKACC--T 527 (651)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~--~ 527 (651)
+|++.|++.... .| +...+..+...+. +
T Consensus 621 ~A~~~y~~al~~-------------------------------------------------~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 621 AARAAYQRVLTR-------------------------------------------------EPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHHHHh-------------------------------------------------CCCCHHHHHHHHHHHHHCC
Confidence 555555544432 33 4666777777765 5
Q ss_pred cHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHH
Q 006303 528 DYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGM--SP---DVVAYTTAIKVCVRSKRLKQ 601 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~li~~~~~~g~~~~ 601 (651)
+.++|.+.++.+.+. .| +..++..+..++...|++++|.++++++..... .| +...+..+...+...|++++
T Consensus 652 ~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 652 DLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 899999999988764 33 456677788899999999999999999987432 12 23466677888999999999
Q ss_pred HHHHHHHHHH
Q 006303 602 AFSLFEEMKH 611 (651)
Q Consensus 602 A~~~~~~m~~ 611 (651)
|.+.|++...
T Consensus 730 A~~~y~~Al~ 739 (1157)
T PRK11447 730 ALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.9e-21 Score=181.56 Aligned_cols=370 Identities=14% Similarity=0.113 Sum_probs=315.4
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
...+++..|.. .+.|..++..+-..|++.+|+.+|+.+++. .|. ..+++.+++.++..+|+.+.|...|.+
T Consensus 105 ~~~a~r~~~q~-ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~------fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 105 SLLAIRKNPQG-AEAYSNLANILKERGQLQDALALYRAAIEL--KPK------FIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred hhhhhhccchH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cch------hhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 34455566666 889999999999999999999999999998 776 477888889999999999999999999
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
.++ +.|+.....+-...|++ ..|+.++|...|.+.++. .|....+|+.++..+..+|+.-+|++.|...
T Consensus 176 alq--lnP~l~ca~s~lgnLlk------a~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 176 ALQ--LNPDLYCARSDLGNLLK------AEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred HHh--cCcchhhhhcchhHHHH------hhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 998 67776655555455554 279999999999998874 4888999999999999999999999999875
Q ss_pred ---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HH
Q 006303 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IY 292 (651)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~ 292 (651)
|.-..+|..|...|-..+.++.|+..|.+... ..| ...++..+...|-..|..+-|++.|++..+. .|+ ..
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~ 321 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPD 321 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchH
Confidence 34458899999999999999999999999887 456 4678888888899999999999999999887 444 45
Q ss_pred HHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHH
Q 006303 293 VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTI 369 (651)
Q Consensus 293 ~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l 369 (651)
.|+.+-.+.. |+..+|.+.|.+..... +....+.+.|...|...|.+++|..+|....+ +.|. ...++.|
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~~aaa~nNL 394 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE------VFPEFAAAHNNL 394 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChhhhhhhhhH
Confidence 6788877754 89999999999998864 23467889999999999999999999999987 4454 4578999
Q ss_pred HHHHHcccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 006303 370 VKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEAC 447 (651)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g 447 (651)
...|-+.|++++|+..|++.++. .|+ ...|+.+...|-..|+++.|...+.+.+..+ |. ....+.|...|-..|
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSG 470 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccC
Confidence 99999999999999999999875 554 5689999999999999999999999998864 43 347888999999999
Q ss_pred ChhHHHHHHHHhhhc
Q 006303 448 QFDRAFRLFRSWTLS 462 (651)
Q Consensus 448 ~~~~a~~~~~~~~~~ 462 (651)
++.+|++-|++.++.
T Consensus 471 ni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 471 NIPEAIQSYRTALKL 485 (966)
T ss_pred CcHHHHHHHHHHHcc
Confidence 999999999987753
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=3.1e-20 Score=176.70 Aligned_cols=441 Identities=15% Similarity=0.151 Sum_probs=281.7
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+++.....+.. ......|..-.-+.|++++|++........ +|..-..++..++. +....+++.....-..
T Consensus 37 v~qq~~~t~~~-~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai------~~q~~r~d~s~a~~~~ 107 (966)
T KOG4626|consen 37 VLQQFNKTHEG-SDDRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAI------FFQGSRLDKSSAGSLL 107 (966)
T ss_pred HHHHhccCCcc-chhHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhh------hhcccchhhhhhhhhh
Confidence 44445555555 444667777778899999999998888776 55543333332222 4555555554443333
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
..+ ..|. .+..++-+.+ .+...|+.++|+..|+.+++.. |+...+|..++.++...|+.+.|.+.|...
T Consensus 108 a~r--~~~q---~ae~ysn~aN---~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 108 AIR--KNPQ---GAEAYSNLAN---ILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred hhh--ccch---HHHHHHHHHH---HHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 333 2221 1234444444 4445899999999999998844 888888888888888888888887766543
Q ss_pred ---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHH
Q 006303 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (651)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 293 (651)
|...-+...+...+-..|++++|...|.+..+. .|. ..+|+.|...+...|+...|++.|++....
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-------- 247 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-------- 247 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------
Confidence 322333444566666678888888888777763 343 557888888888888888888888777654
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHH
Q 006303 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVK 371 (651)
Q Consensus 294 ~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 371 (651)
.|+ ...|-.|...|...+.++.|...|.+...+ .|+ ...+..|..
T Consensus 248 ---------------------------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l------rpn~A~a~gNla~ 294 (966)
T KOG4626|consen 248 ---------------------------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL------RPNHAVAHGNLAC 294 (966)
T ss_pred ---------------------------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc------CCcchhhccceEE
Confidence 222 345555666666666666666666665542 233 345555555
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (651)
.|-..|.++.|++.|++.++.... -...|+.|..++-..|++.+|...+.+..... +......+.|...|...|.+++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchH
Confidence 666666666666666666654211 24456666666666666666666666665542 2233455566666666666666
Q ss_pred HHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCC-HHHHHHHHHHHh--hc
Q 006303 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-TTTYNILMKACC--TD 528 (651)
Q Consensus 452 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~--~~ 528 (651)
|..+|+...+ +.|. ....|.|...|. ++
T Consensus 373 A~~ly~~al~-------------------------------------------------v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 373 ATRLYLKALE-------------------------------------------------VFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHHHHh-------------------------------------------------hChhhhhhhhhHHHHHHhccc
Confidence 6666655433 2333 223444444443 25
Q ss_pred HHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPN-HISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 606 (651)
+++|..-+++.++ +.|+ ...|+.+...|-..|+++.|.+.+.+.+.. .|. ...++.|...|-..|++.+|++-+
T Consensus 404 l~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 404 LDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 5666666666665 5565 447888899999999999999999988873 454 467888999999999999999999
Q ss_pred HHHHHCCCCCCH
Q 006303 607 EEMKHYQIQPNL 618 (651)
Q Consensus 607 ~~m~~~g~~p~~ 618 (651)
+...+ ++||.
T Consensus 480 ~~aLk--lkPDf 489 (966)
T KOG4626|consen 480 RTALK--LKPDF 489 (966)
T ss_pred HHHHc--cCCCC
Confidence 98884 56765
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1.6e-17 Score=178.75 Aligned_cols=499 Identities=9% Similarity=-0.060 Sum_probs=291.3
Q ss_pred chhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHH
Q 006303 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (651)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~ 137 (651)
.+.+++..+|++ ...+..|+..|...|++++|+..+++..+. +|+.... ...+ ...+++++|...++
T Consensus 66 ~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~------~~~L----a~i~~~~kA~~~ye 132 (987)
T PRK09782 66 EFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARL------ERSL----AAIPVEVKSVTTVE 132 (987)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHH------HHHH----HHhccChhHHHHHH
Confidence 367778888998 888899999999999999999999999988 6653222 1111 12288889999999
Q ss_pred HHHHcCCCccccccchhhHHHHHH-----HHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHH
Q 006303 138 KLNELGVAPLELFDGSGFKLLKNE-----CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (651)
++.+. .|+..- .+..+... ...|.+. ++|.+.++ .......|........+.+.|.+.+++++|++
T Consensus 133 ~l~~~--~P~n~~---~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 133 ELLAQ--QKACDA---VPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHh--CCCChh---HHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 99884 443321 11111111 0112222 33333332 11111111222223333555555555555555
Q ss_pred HhhhC----CCCCccHHHHHHHHhh-cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 213 YACIV----PRADILFCNFVREFGK-KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 213 ~~~~~----~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
.+..+ |.+......|...|.. .++ +.+..+++.. +..+...+..+.+.|.+.|+.++|.++++++...-.
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 54443 2222333344444444 233 4444443321 123444555555555555555555555555433211
Q ss_pred c-ccHHHHHH----------------------------------------------------------------------
Q 006303 288 T-LNIYVFNS---------------------------------------------------------------------- 296 (651)
Q Consensus 288 ~-~~~~~~~~---------------------------------------------------------------------- 296 (651)
. |...+|.-
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 1 11111110
Q ss_pred -------------------------HHHhhcCChHHHHHHHHHHHHC-C-CCCCHHhHHHHHHHHHhcCC---HHHHHH-
Q 006303 297 -------------------------LMNVNAHDLKFTLEVYKNMQKL-G-VMADMASYNILLKACCLAGN---TVLAQE- 345 (651)
Q Consensus 297 -------------------------ll~~~~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~ll~~~~~~g~---~~~a~~- 345 (651)
.+....|+.++|.++|...... + ...+......++..|.+.+. ..++..
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 0111123344444444444331 1 11223333355555555444 122211
Q ss_pred ---------------------HHHHHHHhhhcCCccc--cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 346 ---------------------IYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 346 ---------------------~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
.++.+.... +..++ +...|..+..++.. ++.++|...+.+.... .|+.....
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L 513 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHR 513 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHH
Confidence 122222110 10123 55666777766666 7778888877777665 35554444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
.+...+.+.|++++|...|+++... .|+...+..+..++.+.|+.++|...+++....
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-------------------- 571 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-------------------- 571 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------------
Confidence 4455556788888888888887654 344445566667778888888888888877643
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCH-HHHHHHHHHH--hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 559 (651)
.|+. ..+..+.... .+++++|...+++..+. .|+...|..+...+.
T Consensus 572 -----------------------------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~ 620 (987)
T PRK09782 572 -----------------------------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYR 620 (987)
T ss_pred -----------------------------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 2322 2222222222 26899999999999884 567888999999999
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQ 639 (651)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 639 (651)
+.|++++|...+++..+.. +-+...++.+..++...|+.++|++.+++..+.. +-+...+..+..++...|++++|+.
T Consensus 621 ~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999853 2256677888889999999999999999998642 3456788899999999999999888
Q ss_pred HHHH
Q 006303 640 CLAV 643 (651)
Q Consensus 640 ~~~~ 643 (651)
.++.
T Consensus 699 ~l~~ 702 (987)
T PRK09782 699 YARL 702 (987)
T ss_pred HHHH
Confidence 5554
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.9e-19 Score=179.82 Aligned_cols=304 Identities=12% Similarity=0.041 Sum_probs=174.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH---HHHHHHHHhhc
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI---YVFNSLMNVNA 302 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~ 302 (651)
.....+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++. ..+..+...+.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 334556677888999999998887532 35567888888888889999999988888765322211 12222222221
Q ss_pred --CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc---HHHHHHHHHHHHccc
Q 006303 303 --HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAK 377 (651)
Q Consensus 303 --~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 377 (651)
|+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+... ..+. ...+..+...+.+.|
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCC
Confidence 44444444444444331 22344455555555555555555555555443110 0000 112333444444555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006303 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (651)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 457 (651)
++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.+..+|.+.|++++|..
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~--- 270 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE--- 270 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH---
Confidence 5555555555554432 112334444445555555555555555555443211112334444444555555554444
Q ss_pred HhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHH
Q 006303 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN 537 (651)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~ 537 (651)
.++
T Consensus 271 -----------------------------------------------------------------------------~l~ 273 (389)
T PRK11788 271 -----------------------------------------------------------------------------FLR 273 (389)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 444
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 006303 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR---SKRLKQAFSLFEEMKHYQI 614 (651)
Q Consensus 538 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~ 614 (651)
.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.++++|.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 44443 355566677888888888999999888888774 6888888887777664 4578888888888887777
Q ss_pred CCCHH
Q 006303 615 QPNLV 619 (651)
Q Consensus 615 ~p~~~ 619 (651)
+|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 77665
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=3.3e-17 Score=173.51 Aligned_cols=361 Identities=11% Similarity=-0.047 Sum_probs=242.5
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccccc
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~ 151 (651)
..+...+..+...|++++|+..|++.+.. .|+ ...+.++...|...|++++|++.+++.++ +.|+.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~-------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~--l~p~~--- 193 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPD-------PVYYSNRAACHNALGDWEKVVEDTTAALE--LDPDY--- 193 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH--cCCCC---
Confidence 34667788899999999999999999987 554 22356777889999999999999999998 45543
Q ss_pred chhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHH
Q 006303 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (651)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (651)
...+......+...|++++|+..|..+.... +........++..+........+...+...|.+...+..+...+
T Consensus 194 ---~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 194 ---SKALNRRANAYDGLGKYADALLDLTASCIID--GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 2334444556667899999999887766543 11111112222222222223344455555555544444443333
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-Cccc-HHHHHHHHHh--hcC
Q 006303 232 GKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDV---CGICGDYMKSRAIYEDLRSQN-VTLN-IYVFNSLMNV--NAH 303 (651)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~g-~~~~-~~~~~~ll~~--~~~ 303 (651)
...+......-++...+ ..+. ...+..+... ....+++++|.+.|+...+.+ ..|+ ...|+.+-.. ..|
T Consensus 269 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 269 -QSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred -HHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 22112222222222111 1111 1111111111 123468899999999988764 2233 2333333333 347
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
++++|+..|++..+.. +.+...|..+...+...|++++|...|+++.+. .+.+...|..+...+...|++++|.
T Consensus 346 ~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 346 KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999998887753 224668888888999999999999999998774 2445778888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
..|++.++.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...++.+..++...|++++|++.|++....
T Consensus 420 ~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 420 KDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 9999998874 2366778888889999999999999999988763 445778888999999999999999999887653
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=4.3e-17 Score=172.66 Aligned_cols=421 Identities=11% Similarity=-0.023 Sum_probs=288.3
Q ss_pred HHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHH
Q 006303 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (651)
Q Consensus 116 ~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (651)
+...+..+...|++++|+..|++.++ ..|+.. .+.+.+..+...|++++|++.+++.++.. |+....+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~-------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~ 198 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPV-------YYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALN 198 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHH
Confidence 34556678999999999999999997 456432 23444556667899999999999998854 88888899
Q ss_pred HHHHHHhcCCChHHHHHHhhhC---CCC-CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC
Q 006303 196 RIVQLCVNKPDVNLAIRYACIV---PRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (651)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (651)
.++.++...|++++|...+..+ +.. ......++..+.. ..+........+... ++...+..+...+ ....
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~ 272 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGNYL-QSFR 272 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHcc
Confidence 9999999999999998876543 111 1111111111111 223333333333211 2222333333322 1111
Q ss_pred HHHHHHHHHHHHhCCCccc-----HHHHHHHHHh-hcCChHHHHHHHHHHHHCC-CCC-CHHhHHHHHHHHHhcCCHHHH
Q 006303 272 YMKSRAIYEDLRSQNVTLN-----IYVFNSLMNV-NAHDLKFTLEVYKNMQKLG-VMA-DMASYNILLKACCLAGNTVLA 343 (651)
Q Consensus 272 ~~~a~~~~~~~~~~g~~~~-----~~~~~~ll~~-~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a 343 (651)
......-+....+. .+. .......+.. ..+++++|.+.|+.....+ ..| +...+..+...+...|++++|
T Consensus 273 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 273 PKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred CCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 11111112111111 111 0111111111 2257899999999998765 223 456788888889999999999
Q ss_pred HHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 344 QEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (651)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 422 (651)
+..|++.... .|+ ...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|...|+
T Consensus 351 ~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 351 LADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999873 444 5688889999999999999999999998874 3367889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcc
Q 006303 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502 (651)
Q Consensus 423 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (651)
+..+.. +.+...+..+..++.+.|++++|+..|++.....
T Consensus 424 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------------------------------------- 463 (615)
T TIGR00990 424 KSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------------------------------------- 463 (615)
T ss_pred HHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------------------
Confidence 999875 4456778888889999999999999999876531
Q ss_pred cccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHhcCCChHHHHHHHHHH
Q 006303 503 SSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHI------SWTILIDACGGSGNVEGALQILKIM 574 (651)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~~ 574 (651)
+.+...|+.+...+. +++++|...|+.........+.. .++..+..+...|++++|.+++++.
T Consensus 464 ---------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 464 ---------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred ---------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 223556666666655 58999999999988753221111 1222223344579999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 575 REDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 575 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
.+.. ..+...+..+...+.+.|++++|.++|++..+.
T Consensus 535 l~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 535 LIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8753 224557889999999999999999999998754
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=5.9e-18 Score=170.31 Aligned_cols=295 Identities=14% Similarity=0.101 Sum_probs=203.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc--cHHHHHHHHHHH
Q 006303 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVF 373 (651)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 373 (651)
.+.....|+++.|...|.++.+.+ +.+..++..+...+...|++++|..+++.+... +...+ ....+..+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR---PDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHH
Confidence 333334456666666666666543 234556777777777778888888777777641 10001 124566777777
Q ss_pred HcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCh
Q 006303 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS----QCCNILLQACVEACQF 449 (651)
Q Consensus 374 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~ 449 (651)
...|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 77788888888887777652 335667777777777888888888888777765432221 1344556667777888
Q ss_pred hHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--h
Q 006303 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527 (651)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~ 527 (651)
++|...|+++.... +.+...+..+...+. +
T Consensus 197 ~~A~~~~~~al~~~------------------------------------------------p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 197 DAARALLKKALAAD------------------------------------------------PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHHHHHHHHhHC------------------------------------------------cCCHHHHHHHHHHHHHCC
Confidence 88888887765431 112334455555554 3
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (651)
++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|.++++
T Consensus 229 ~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 229 DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67788888888776432223467888999999999999999999999885 5777777889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhc
Q 006303 608 EMKHYQIQPNLVTYITLLRARSR---YGSLHEVQQCLAVYQDMWKA 650 (651)
Q Consensus 608 ~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~m~~~ 650 (651)
++.+. .|+..++..++..+.. .|+.++ .+.++++|.++
T Consensus 307 ~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~---a~~~~~~~~~~ 347 (389)
T PRK11788 307 EQLRR--HPSLRGFHRLLDYHLAEAEEGRAKE---SLLLLRDLVGE 347 (389)
T ss_pred HHHHh--CcCHHHHHHHHHHhhhccCCccchh---HHHHHHHHHHH
Confidence 99864 6999999999988775 346555 44577777654
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=1.2e-15 Score=164.30 Aligned_cols=520 Identities=11% Similarity=-0.035 Sum_probs=304.4
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
+..+-.....+...|++++|+..|+++++. +|+. ..++..++..|...|++++|+..+++..+ ..|+...
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n------~~~~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~ 113 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQ--VPDN------IPLTLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDAR 113 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHH
Confidence 334444445555669999999999999998 8873 44556788899999999999999999998 4554431
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHH--------HhcCCChHHHHHHhhhCCCC--
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL--------CVNKPDVNLAIRYACIVPRA-- 220 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~-- 220 (651)
....+. . .+++++|+.+++++.... |.+..+...+... |.+.+....++. ....+++
T Consensus 114 ---~~~~La----~---i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~ 180 (987)
T PRK09782 114 ---LERSLA----A---IPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPE 180 (987)
T ss_pred ---HHHHHH----H---hccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCC
Confidence 222221 1 388899999999999865 7777777777776 778877778887 5555544
Q ss_pred Cc-cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 221 DI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 221 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
+. ....+...|.+.|++++|++.+.++.+.+. .+......|..+|.. .++ +++..++.. .++-+...+..+.
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 33 344458999999999999999999999764 345557777778887 366 888777553 2334677777777
Q ss_pred Hhhc--CChHHHHHHHHHHHHCCC-CCCHHhHH------------------------------HHHHHHHhcCCHHHHHH
Q 006303 299 NVNA--HDLKFTLEVYKNMQKLGV-MADMASYN------------------------------ILLKACCLAGNTVLAQE 345 (651)
Q Consensus 299 ~~~~--~~~~~a~~~~~~m~~~~~-~~~~~~~~------------------------------~ll~~~~~~g~~~~a~~ 345 (651)
..+. |+.+.|.+++.++...-. .|...++. .++..+.+.++++.+++
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7654 788888888877644311 12222221 12344444555554443
Q ss_pred HHHHHH-----HhhhcCC-------------------ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC-C-CCCCHH
Q 006303 346 IYGEVK-----HLEAKGV-------------------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-G-VTPNTI 399 (651)
Q Consensus 346 ~~~~~~-----~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-~~~~~~ 399 (651)
+...-. ...-.+. .+-+......+.....+.|+.++|.++|+..... + -.++..
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 321000 0000000 0112222223333344556666666666665541 1 111222
Q ss_pred HHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCChh
Q 006303 400 TWSSLINACANAGL---VEQAMHL----------------------FEEMLQA-GC-EP--NSQCCNILLQACVEACQFD 450 (651)
Q Consensus 400 ~~~~ll~~~~~~g~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~g~~~ 450 (651)
...-++..|.+.+. ..++..+ ++..... +. ++ +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 33344444444433 1122111 1111110 01 12 33344444444443 4555
Q ss_pred HHHHHHHHhhhcccccccccccCCchhhhhh--hhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--
Q 006303 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISN--MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-- 526 (651)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-- 526 (651)
+|...+.+........ .. ....... ..+..... +..+.+.....|+...+..+...+.
T Consensus 494 eAi~a~~~Al~~~Pd~-~~-----~L~lA~al~~~Gr~eeA------------i~~~rka~~~~p~~~a~~~la~all~~ 555 (987)
T PRK09782 494 VALYAWLQAEQRQPDA-WQ-----HRAVAYQAYQVEDYATA------------LAAWQKISLHDMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHHHhCCch-HH-----HHHHHHHHHHCCCHHHH------------HHHHHHHhccCCCcHHHHHHHHHHHHC
Confidence 5555444443322110 00 0000000 00000000 0000000001333333433333333
Q ss_pred hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 527 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (651)
++.++|...++...+.. ..+...+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|.+.+
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 58889999999998854 223334444445555679999999999999984 578888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 607 EEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 607 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
++..+.. +-+...+..+..++...|+.++|...++
T Consensus 633 ~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 633 RAALELE-PNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9998653 3345667777779999999999877544
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=9.6e-17 Score=169.16 Aligned_cols=288 Identities=10% Similarity=-0.020 Sum_probs=220.8
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 239 (651)
...+.|+.++|..+++..+... |.+...+..++.++...|++++|...++.+ |.+..++..+...+.+.|++++
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 3444799999999999888755 777777888888888899999998887775 6777888889999999999999
Q ss_pred HHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 006303 240 ALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (651)
Q Consensus 240 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (651)
|+..++++.+. .| +...+..+...+...|++++|...++.+......+....++.......|++++|...++.+...
T Consensus 129 Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 129 VADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999998874 34 5677888888999999999999999888665443322222222222347888888888888765
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH----HHHHHHHHHHCCC
Q 006303 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM----ALKVKEDMLSAGV 394 (651)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~ 394 (651)
...++...+..+..++...|++++|...|+.+... .+.+...+..+...+...|++++ |...|++..+...
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 43334445555667788889999999999888763 23456677788888888898885 7888888887642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 395 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...|+.+...
T Consensus 282 -~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 282 -DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 366788888888889999999999999888764 344566777788888889999998888877653
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.1e-16 Score=168.65 Aligned_cols=331 Identities=11% Similarity=0.018 Sum_probs=204.2
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 152 (651)
-....+..+.+.|++.+|+.+++..+.. .|.+ .+++..++......|++++|+..++++.+ ..|+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~--~~P~~~--- 110 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLT--AKNG------RDLLRRWVISPLASSQPDAVLQVVNKLLA--VNVCQP--- 110 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCc------hhHHHHHhhhHhhcCCHHHHHHHHHHHHH--hCCCCh---
Confidence 3344556666777777777777777776 4442 33344455556667777777777777776 344332
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHh
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~ 232 (651)
..+......+.+.|++++|+..+++++... |++.. ++..++..+.
T Consensus 111 ---~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~------------------------------a~~~la~~l~ 155 (656)
T PRK15174 111 ---EDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQ------------------------------IFALHLRTLV 155 (656)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHH------------------------------HHHHHHHHHH
Confidence 112222234445677777777777776633 44444 4444555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh--hcCChHHHHH
Q 006303 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~a~~ 310 (651)
..|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....++...+..+... ..|++++|..
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~ 233 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ 233 (656)
T ss_pred HCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 555555555555555443221 12222222 2244556666666665555444222222222222222 2255666666
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHH
Q 006303 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVL----AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
.+++..... +.+...+..+...+...|++++ |...|+.+... .+.+...+..+...+...|++++|...+
T Consensus 234 ~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 234 TGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666655543 3356677778888888888875 78888888763 2345667888888888889999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
++...... .+...+..+..++.+.|++++|...|+++.+.+ |+. ..+..+..++...|+.++|...|++....
T Consensus 308 ~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 308 QQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88887643 255667778888888899999999888888763 333 33444566778889999999888887654
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.3e-16 Score=156.85 Aligned_cols=549 Identities=13% Similarity=0.044 Sum_probs=350.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
|...+...|++ .-.+.--+...-..|++..|+.+|..++.. .|...+. ....+...++..|+.+.|+..|.+
T Consensus 153 F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~i--np~~~aD-----~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 153 FHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRI--NPACKAD-----VRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhc--CcccCCC-----ccchhhhHHHhccchhhHHHHHHH
Confidence 44444455665 333333333334568999999999998776 3322111 111122335688999999999999
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCC
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 218 (651)
..+ +.|+.. ..+-.|.-.-..+-....+..++..+...-.. .+.++.+.+.|...|.-.|++..++.+...+-
T Consensus 225 alq--Ldp~~v---~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 225 ALQ--LDPTCV---SALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHh--cChhhH---HHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 988 556332 11111111111222345566777777666553 37788888899999999999998888755432
Q ss_pred CC-------CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH
Q 006303 219 RA-------DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (651)
Q Consensus 219 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 291 (651)
.+ ...|.-+..+|-.+|++++|...|.+..+....-....+.-+...+.+.|+++.+...|+.+... .|+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~ 375 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNN 375 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Ccch
Confidence 21 25578889999999999999999988877432112345566788899999999999999988876 4454
Q ss_pred HHHHHHHH-hhcC------ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-hhhcCCccccH
Q 006303 292 YVFNSLMN-VNAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-LEAKGVLKLDV 363 (651)
Q Consensus 292 ~~~~~ll~-~~~~------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~ 363 (651)
.--..++. .|++ ..+.|..++....+.- +.|...|..+...+-.. +...+...|..+.. +...+ -.+.+
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~-~~ip~ 452 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKG-KQIPP 452 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcC-CCCCH
Confidence 43333333 3332 3466777776666543 45677787777766544 44444777776663 33344 34778
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSA---GVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (651)
...|.+...+...|+++.|...|...... ...+|. .+-..+..++-..++.+.|.+.|..+.+. .|.-.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhH
Confidence 88899999999999999999999888754 122233 23344666667778899999999998876 34433
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCC
Q 006303 435 -CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (651)
Q Consensus 435 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (651)
.|-.+.......+...+|...++.....+..........+.+..-..-..... ..+....+.-...+
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~------------k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK------------KKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc------------cHHHHHHhhhccCC
Confidence 33333322233467778888887776544322111111111110000000000 00000111111235
Q ss_pred CHHHHHHHHHHHh--------------hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 006303 514 TTTTYNILMKACC--------------TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM 579 (651)
Q Consensus 514 ~~~~~~~ll~~~~--------------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (651)
|..+.-.|-..|. +..++|.++|.+..+.. +-|...-|.+.-.++..|++.+|..+|.+..+...
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 5555544444332 13578999999988853 23777788888999999999999999999998643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643 (651)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 643 (651)
-...+|-.+..+|..+|++..|+++|+... +..-.-+......|.+++.+.|.+.++.+.+..
T Consensus 678 -~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 678 -DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred -hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 356678889999999999999999999876 445566788999999999999999998876543
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=4.6e-15 Score=135.79 Aligned_cols=462 Identities=14% Similarity=0.179 Sum_probs=312.4
Q ss_pred HHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHH-HHHHHHHHhcCCCccccchHHHHH
Q 006303 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMF-VGLMEVLEEFRLPVKELDEEFRIV 198 (651)
Q Consensus 120 ~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~ 198 (651)
+.....+|..+++.-+|+.|.+.|+..+......++.++ +-| ...++.-| .+.|-.|...| .+....|
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV----~~~-Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW---- 190 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLV----TYY-NSSNVPFAEWEEFVGMRNFG--EDSTSSW---- 190 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhh-cCCCCcchhHHHHhhccccc--ccccccc----
Confidence 334678999999999999999988777665444443332 222 22333311 12233333333 2222222
Q ss_pred HHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 006303 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (651)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (651)
+.|.+ |.-+++..|+.+.++..+|.++|+--..+.|.++|++........+..+||.+|.+-+-..+ .++
T Consensus 191 ----K~G~v--AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~L 260 (625)
T KOG4422|consen 191 ----KSGAV--ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKL 260 (625)
T ss_pred ----ccccH--HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHH
Confidence 23444 44788999999999999999999999999999999999887777899999999987554433 688
Q ss_pred HHHHHhCCCcccHHHHHHHHHhhc--CChH----HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 006303 279 YEDLRSQNVTLNIYVFNSLMNVNA--HDLK----FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVK 351 (651)
Q Consensus 279 ~~~~~~~g~~~~~~~~~~ll~~~~--~~~~----~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~ 351 (651)
+.+|.+..+.||..|+|+++.+.+ |+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++..+.
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 999999999999999999999855 6554 468899999999999999999999999999888654 444444443
Q ss_pred H-hhhc---CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 006303 352 H-LEAK---GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTPN---TITWSSLINACANAGLVEQAMHL 420 (651)
Q Consensus 352 ~-~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~g~~~~a~~~ 420 (651)
. +..+ ...+.|..-|...+..|.+..+.+-|.++...+.... +.|+ ..-|..+....|+....+.....
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1111 1122344557778888889999999999887765321 2233 23467778888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCC
Q 006303 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500 (651)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (651)
|+.|.-.-+-|+..+...++++..-.+.++-.-+++..+...+..-. ......+......
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r--------~~l~eeil~~L~~------------ 480 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR--------SDLREEILMLLAR------------ 480 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh--------HHHHHHHHHHHhc------------
Confidence 99999888889999999999999899999988888888776553110 0000011000000
Q ss_pred cccccccccccCCCHHHHHHHHHHHhhcHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCC-
Q 006303 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA-LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG- 578 (651)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 578 (651)
.+-....|...-+.....-|+-+..++.+ --..|.+. .......+.+.-.+.+.|..++|.++|..+.+.+
T Consensus 481 -----~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 481 -----DKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred -----CCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 00001123333444444444444333333 22344443 3455667777788889999999999999996543
Q ss_pred C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 579 M---SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (651)
Q Consensus 579 ~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 629 (651)
- .|.......+++.-.+.++...|...++-|...+...-...-+.++..|.
T Consensus 554 ~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 554 KIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 2 23344444677778888999999999999976554322223444444443
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.8e-15 Score=163.11 Aligned_cols=337 Identities=13% Similarity=0.048 Sum_probs=180.6
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
+.-....+....-.|+.++|+++++.+... .|. ...++..++..+...|++++|+..|++.++. .|+..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~- 83 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVH--MQL------PARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQND- 83 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH-
Confidence 555566667777789999999999888764 332 1344566677788999999999999998873 44332
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (651)
.........+...|++++|+..+++++... |.+.. +..++.++...|++++|+..++++ |.+..++..
T Consensus 84 -----~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 84 -----DYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred -----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 112222334455799999999999888754 55555 555666666666666665555443 444445555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
+...+...++.+.|++.++.+.. .|+. .....++......+. .
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~----------------------------~ 204 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR----------------------------S 204 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc----------------------------C
Confidence 55555555666666655554432 1210 001111111100000 0
Q ss_pred hcCCh---HHHHHHHHHHHHC-CCCCCHH-hH----HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHH
Q 006303 301 NAHDL---KFTLEVYKNMQKL-GVMADMA-SY----NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (651)
Q Consensus 301 ~~~~~---~~a~~~~~~m~~~-~~~~~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 371 (651)
..+++ +.|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+. +...|+. ....+..
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~---~~~~P~~-a~~~la~ 280 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE---GQIIPPW-AQRWVAS 280 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---CCCCCHH-HHHHHHH
Confidence 00112 4455555555432 1112111 11 11122334556666666666666542 1001221 1122355
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCC---HH
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTP---NTITWSSLINACANAGLVEQAMHLFEEMLQAGC-----------EPN---SQ 434 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~ 434 (651)
.|...|++++|+.+|+++....... .......+..++.+.|++++|..+++.+.+... .|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 6666666777776666665432111 123344455556666677777766666665421 122 12
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 435 CCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.+..+...+...|+.++|+++++++..
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666677777777777777654
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=3.1e-15 Score=161.35 Aligned_cols=424 Identities=11% Similarity=0.014 Sum_probs=270.7
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (651)
-.+......|+.++|+.++++.... .|.. -..+...+..+.+.|++++|+.++++.+... |.+...+..+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l 89 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVH--MQLP------ARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGL 89 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 3344567788889988888888752 2211 1112333335555788888988888887744 6666666677
Q ss_pred HHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
+..+...|++++|...++.+ |.+.. +..+...+...|+.++|+..++++.+..+ .+...+..+..++...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChH
Confidence 77777777777777666553 44555 66677777777777777777777776322 23445555666666667777
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-----HhcCCH---HHHHH
Q 006303 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC-----CLAGNT---VLAQE 345 (651)
Q Consensus 274 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~g~~---~~a~~ 345 (651)
.|+..++.... .|+. .. ..+ ......++... ...+++ ++|++
T Consensus 168 ~Al~~l~~~~~---~p~~---~~-----------~l~-------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 168 PALGAIDDANL---TPAE---KR-----------DLE-------------ADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HHHHHHHhCCC---CHHH---HH-----------HHH-------------HHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 77776665543 1220 00 000 00011111111 122233 67788
Q ss_pred HHHHHHHhhhcCCccccHH-HH----HHHHHHHHcccCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 346 IYGEVKHLEAKGVLKLDVF-TY----STIVKVFADAKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMH 419 (651)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~ 419 (651)
.++.+.+... ..|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|..
T Consensus 218 ~~~~ll~~~~---~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 218 QYDALEALWH---DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHhhcc---cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 8888775311 112221 11 11244556789999999999999987532 332 22335778999999999999
Q ss_pred HHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCc
Q 006303 420 LFEEMLQAGCEP---NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496 (651)
Q Consensus 420 ~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (651)
.|+++.+..... .......+..++...|++++|.++++.+..........
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~--------------------------- 346 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL--------------------------- 346 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee---------------------------
Confidence 999988754211 13456667778899999999999999987653210000
Q ss_pred cCCCcccccccccccCCCH---HHHHHHH--HHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHH
Q 006303 497 VPNSHYSSFDKRFSFKPTT---TTYNILM--KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL 571 (651)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~---~~~~~ll--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 571 (651)
.....-.|+. ..+..+. ....++.++|..+++++.... +-+...+..+...+...|++++|++.+
T Consensus 347 ---------~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 347 ---------YGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred ---------cCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0000013442 1222232 233468999999999998753 335778889999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 572 KIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (651)
Q Consensus 572 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 628 (651)
++..+. .|+ ...+......+...|++++|.++++++++. .|+......+-+.+
T Consensus 417 ~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 417 KKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 999985 455 566667777899999999999999999964 57766554444443
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.5e-14 Score=144.41 Aligned_cols=482 Identities=11% Similarity=0.033 Sum_probs=283.2
Q ss_pred cchhhccccCCccchhhhHHHHHhhhc---cCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHH
Q 006303 57 TALLSTVRRDLSSRNDYYADMASKLAK---DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133 (651)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 133 (651)
.++.++++.+|.. ..++..|.-.-.. ...+..+..++.+.-.. .|. +..+++.+...+...|++..++
T Consensus 220 ~a~~ralqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~------nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 220 LAFERALQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNE------NPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred HHHHHHHhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCC------CcHHHHHHHHHHhhcccHHHHH
Confidence 4566777777755 5555555433332 24445666666655554 332 2334455666677777777777
Q ss_pred HHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccc-cchHHHHHHHHhcCCChHHHHH
Q 006303 134 GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVNKPDVNLAIR 212 (651)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 212 (651)
.+...+.... .+...-...+-.+.++ +...|++++|...|-+..+.. +++ ...+..+++.+...|+.+.+..
T Consensus 291 ~la~~ai~~t--~~~~~~aes~Y~~gRs---~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 291 HLAEHAIKNT--ENKSIKAESFYQLGRS---YHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHhh--hhhHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHH
Confidence 7777776642 2222222333444552 333677777777777666544 333 4445567777777777777766
Q ss_pred Hhhh----CCCCCccHHHHHHHHhhcC----CHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 006303 213 YACI----VPRADILFCNFVREFGKKR----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR- 283 (651)
Q Consensus 213 ~~~~----~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~- 283 (651)
.|+. .|.+..+...|...|+..+ ..+.|..++.+..+.. +.|...|-.+...+....-+.. +.+|....
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d 441 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALD 441 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHH
Confidence 5544 3666666666666666654 4455555555555532 2356666666666654443333 55544332
Q ss_pred ---hCCCcccHHHHHHHHHh--hcCChHHHHHHHHHHHHC---CCCC------CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 284 ---SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL---GVMA------DMASYNILLKACCLAGNTVLAQEIYGE 349 (651)
Q Consensus 284 ---~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~---~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (651)
..+-.+.....|.+-.. ..|+++.|...|+..... -..+ +..+--.+...+-..++.+.|.+.|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 33333445555555443 336777777766665443 1112 222222345555566777888888887
Q ss_pred HHHhhhcCCccccH-HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 350 VKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 350 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
+.+ ..|+- ..|-.+.......+...+|...++...... ..+...++.+...+.+..++..|.+-|+.+.+.-
T Consensus 522 Ilk------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 522 ILK------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHH------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 776 23443 345555544445567777777777776543 3355556666767777777777777666665532
Q ss_pred -CCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCC
Q 006303 429 -CEPNSQCCNILLQACVE------------ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495 (651)
Q Consensus 429 -~~~~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (651)
..+|.++.-.|.+.|.+ .+..++|+++|.+.+...
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-------------------------------- 642 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-------------------------------- 642 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--------------------------------
Confidence 23566666556655432 245677888887776543
Q ss_pred ccCCCcccccccccccCCCHHHHHHH--HHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 006303 496 FVPNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKI 573 (651)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (651)
+.|...-|.+ +-+.++++..|..||.+..+... -+..+|-.+.++|..+|++..|+++|+.
T Consensus 643 ----------------pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 643 ----------------PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred ----------------cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333 23344577788888888777532 2456777788888888888888888877
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 574 MRED-GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 574 ~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
..+. .-+-+..+...|.+++.+.|++.+|.+........
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 6653 33446667777888888888888888777776643
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.9e-13 Score=144.50 Aligned_cols=463 Identities=10% Similarity=0.015 Sum_probs=308.8
Q ss_pred HHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHH
Q 006303 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (651)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (651)
+-...+.|++..|+..|+++++. .|..-. .+..++..+...|+.++|+..+++... |++. .+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~------av~dll~l~~~~G~~~~A~~~~eka~~----p~n~----~~~~ 104 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSG------QVDDWLQIAGWAGRDQEVIDVYERYQS----SMNI----SSRG 104 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--Cccchh------hHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCC----CHHH
Confidence 34446789999999999999988 665321 111445567788999999999999883 2221 1222
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC-CC--ccHHHHHHHHhhc
Q 006303 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-AD--ILFCNFVREFGKK 234 (651)
Q Consensus 158 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--~~~~~l~~~~~~~ 234 (651)
+...+..+...|++++|+++|+++++.. |++...+..++..+...++.++|++.+..+.. ++ ..+..++..+...
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhc
Confidence 3333345666899999999999999865 77778888888888999999999998887632 22 2233334444445
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (651)
++..+|++.++++.+..+ -+...+..+..++.+.|-...|.++..+-+ +.++-...... +.+.+. +
T Consensus 183 ~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l---~~~~~a----~ 248 (822)
T PRK14574 183 DRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL---ERDAAA----E 248 (822)
T ss_pred chHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH---HHHHHH----H
Confidence 666669999999988531 356777888888888888888887776533 21111111110 001111 1
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHHhhhcCCccccHHHH----HHHHHHHHcccCHHHHHHHHH
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNT---VLAQEIYGEVKHLEAKGVLKLDVFTY----STIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~ 387 (651)
+++.+..++.. ...++ +.|..-++.+.... +..++....| --.+-++...|++.++++.|+
T Consensus 249 ~vr~a~~~~~~----------~~~r~~~~d~ala~~~~l~~~~--~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 249 QVRMAVLPTRS----------ETERFDIADKALADYQNLLTRW--GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHhhccccccc----------chhhHHHHHHHHHHHHHHHhhc--cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11111111100 11222 33344444433211 1123222222 345678889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.+...+.+....+-..+.++|...+++++|..+++.+.... ..++......|.-+|...+++++|..+++++...
T Consensus 317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 99988876567788899999999999999999999997753 1234444678899999999999999999999863
Q ss_pred ccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHH---HHHHhhcHHHHHHHHHHH
Q 006303 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL---MKACCTDYYRVKALMNEM 539 (651)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~a~~~~~~~ 539 (651)
.. .. -..... ......||-..+..+ ..++.++..+|++.++++
T Consensus 397 ~p-~~-~~~~~~--------------------------------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 397 TP-YQ-VGVYGL--------------------------------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CC-cE-EeccCC--------------------------------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 00 000000 000024554333322 334567999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006303 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (651)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 618 (651)
.... +-|......+.+.+...|...+|+++++..... .|+ ..+....+.++...|++.+|.++.+...+. .|+.
T Consensus 443 ~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~ 517 (822)
T PRK14574 443 SSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISR--SPED 517 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCc
Confidence 7753 348889999999999999999999999777764 444 556667888899999999999999988753 5666
Q ss_pred HHHHH
Q 006303 619 VTYIT 623 (651)
Q Consensus 619 ~~~~~ 623 (651)
.....
T Consensus 518 ~~~~~ 522 (822)
T PRK14574 518 IPSQE 522 (822)
T ss_pred hhHHH
Confidence 54443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.7e-13 Score=144.81 Aligned_cols=425 Identities=11% Similarity=0.039 Sum_probs=307.8
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC--CCccHHHH--HHHHhhcCCHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILFCNF--VREFGKKRDLVSA 240 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~l--~~~~~~~g~~~~a 240 (651)
..+.|+++.|+..|++.++.. |........++..+...|+.++|+.++++... +...+..+ +..|...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345799999999999998855 65542333778888889999999999988632 22333333 6688889999999
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCChHHHHHHHHHHHHC
Q 006303 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKL 318 (651)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~ 318 (651)
+++|+++.+... -+...+..++..+...++.++|++.++.+... .|+...+..+...+ .++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999998543 24667778888899999999999999999877 45555554443333 24555699999999987
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH------HHHHHHH-----HcccCH---HHHHH
Q 006303 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY------STIVKVF-----ADAKWW---QMALK 384 (651)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~~~~---~~a~~ 384 (651)
. +-+...+..++.++.+.|-...|.++.++-..+ +.+....+ ..+++.- ....++ +.|+.
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-----VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 5 446778888999999999999999887765432 22221111 1111110 022333 34555
Q ss_pred HHHHHHHC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 385 VKEDMLSA-GVTPNT-----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 385 ~~~~m~~~-~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
-++.+... +..|.. ....-.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|..+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 55555542 222322 233355668889999999999999999988776777899999999999999999999999
Q ss_pred hhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHH
Q 006303 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALM 536 (651)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~ 536 (651)
+....... ....++......|..++. .++++|..++
T Consensus 353 ~~~~~~~~------------------------------------------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 353 LYYSDGKT------------------------------------------FRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred Hhhccccc------------------------------------------cCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 86543210 001334444567778886 4899999999
Q ss_pred HHHHHcCC-----------CC--cHH-HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006303 537 NEMRTVGL-----------SP--NHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 537 ~~~~~~~~-----------~p--~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 602 (651)
+.+.+.-. .| |-. .+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 99987321 12 222 33456677889999999999999998853 34788889999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 603 FSLFEEMKHYQIQPN-LVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 603 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
.+.++..... .|+ ..+......++...|++.+|+.++.-+.
T Consensus 470 ~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 470 EQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999777644 454 4667778888999999999988765443
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=8.2e-14 Score=128.57 Aligned_cols=426 Identities=14% Similarity=0.106 Sum_probs=264.8
Q ss_pred chhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCC-----Cc
Q 006303 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA-----DI 222 (651)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~-----~~ 222 (651)
..+|+.|.+.+..|.....+.+|+..|+-++.....|..-..-..++..+.+..++.+|+++++.. |.- ..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 346778888888888889999999999999887777776666666788888999999999987764 321 14
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------ccc
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV------------TLN 290 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~------------~~~ 290 (651)
..+.+.-.+.+.|.+++|+..|+...+ ..|+..+--.|+-++..-|+.++..+.|.+|..... .|+
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 566677778899999999999999887 458877666666666678999999999999876432 234
Q ss_pred HHHHHHHHHh-----hc-C---ChHHHHHHHHHHHHCCCCCCHHh-------------H--------HHHHHHHHhcCCH
Q 006303 291 IYVFNSLMNV-----NA-H---DLKFTLEVYKNMQKLGVMADMAS-------------Y--------NILLKACCLAGNT 340 (651)
Q Consensus 291 ~~~~~~ll~~-----~~-~---~~~~a~~~~~~m~~~~~~~~~~~-------------~--------~~ll~~~~~~g~~ 340 (651)
....+..|.. .. . +.+.++-.--.++.--+.|+-.. + ..-...+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 4444444432 11 1 11222211111221112222100 0 1123457899999
Q ss_pred HHHHHHHHHHHHhhhcCCccccHHHHH-HHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 341 VLAQEIYGEVKHLEAKGVLKLDVFTYS-TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419 (651)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 419 (651)
+.|+++++-..+.. . -..+...-| .++..+.-..++..|..+-+..+... .-+....+.-.+.....|++++|.+
T Consensus 436 ~~aieilkv~~~kd--n-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 436 EGAIEILKVFEKKD--N-KTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred HHHHHHHHHHHhcc--c-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 99999998776521 1 011111111 11221211223444444444443221 1122222222222233444444444
Q ss_pred HHHHHHHcCC---------------------------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhccccc
Q 006303 420 LFEEMLQAGC---------------------------------EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466 (651)
Q Consensus 420 ~~~~~~~~~~---------------------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (651)
.+++....+- ..+..+...+...|....+...|++++.+....
T Consensus 512 ~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl---- 587 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL---- 587 (840)
T ss_pred HHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc----
Confidence 4444443322 223334444444444444444444444332211
Q ss_pred ccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCC
Q 006303 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544 (651)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~ 544 (651)
++.|+..++-|...|-+ +-.+|.+.+-+--+. +
T Consensus 588 --------------------------------------------ip~dp~ilskl~dlydqegdksqafq~~ydsyry-f 622 (840)
T KOG2003|consen 588 --------------------------------------------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-F 622 (840)
T ss_pred --------------------------------------------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-c
Confidence 34567778888777765 455666654443332 3
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV-RSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623 (651)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 623 (651)
+-+..|...|...|....-++++..+|++..- ++|+..-|..+|..|. +.|++.+|+.+++...+. ++-|...+..
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkf 699 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKF 699 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHH
Confidence 44788888888889999999999999998865 6899999998887665 589999999999999864 7889999999
Q ss_pred HHHHHHhcCCHH
Q 006303 624 LLRARSRYGSLH 635 (651)
Q Consensus 624 l~~~~~~~g~~~ 635 (651)
|++.|...|..+
T Consensus 700 lvri~~dlgl~d 711 (840)
T KOG2003|consen 700 LVRIAGDLGLKD 711 (840)
T ss_pred HHHHhccccchh
Confidence 999998888643
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.8e-11 Score=112.61 Aligned_cols=409 Identities=15% Similarity=0.156 Sum_probs=274.1
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchH--HHHHHHHhcCCChHHH-HHHhhhC----CCCCccHHHHHHHHhhcCCH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEE--FRIVQLCVNKPDVNLA-IRYACIV----PRADILFCNFVREFGKKRDL 237 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A-~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 237 (651)
+...|.++++.-+|+.|...+.+.....-. ..++..| ...++--| ++.|-.+ .++..+| +.|++
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~-Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYY-NSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhh-cCCCCcchhHHHHhhcccccccccccc--------ccccH
Confidence 344799999999999999888654332222 2223222 33333222 2222222 1122222 33554
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006303 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (651)
.+ ++-+.. +.+..++..||.++++.-..+.|.++|++......+.+..+||.+|.+.+- ....+++.+|..
T Consensus 196 Ad---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--~~~K~Lv~EMis 266 (625)
T KOG4422|consen 196 AD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--SVGKKLVAEMIS 266 (625)
T ss_pred HH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--hccHHHHHHHHH
Confidence 44 333322 246779999999999999999999999999998889999999999987431 112789999999
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHH----HHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH-HHHHHHHHHH-
Q 006303 318 LGVMADMASYNILLKACCLAGNTVLA----QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLS- 391 (651)
Q Consensus 318 ~~~~~~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~- 391 (651)
..+.||..|+|+++.+..+.|+++.| .+++.+|++++ +.|...+|..+|..+++.++..+ +.-++..+..
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG----VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG----VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC----CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 99999999999999999999988765 45667777653 89999999999999999888644 3334444332
Q ss_pred ---CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCChhHHHHHHH
Q 006303 392 ---AGVT----PNTITWSSLINACANAGLVEQAMHLFEEMLQAG----CEPNS---QCCNILLQACVEACQFDRAFRLFR 457 (651)
Q Consensus 392 ---~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~ 457 (651)
..++ -|...|..-+..|.+..+.+.|.++..-+.... +.|+. .-|..+....|+....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 255677888899999999999988877665432 23332 236667778888888898899998
Q ss_pred HhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHH
Q 006303 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKAL 535 (651)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~ 535 (651)
.|...- +-|+..+...++.+.. +.++-.-++
T Consensus 423 ~lVP~~-----------------------------------------------y~p~~~~m~~~lrA~~v~~~~e~ipRi 455 (625)
T KOG4422|consen 423 DLVPSA-----------------------------------------------YFPHSQTMIHLLRALDVANRLEVIPRI 455 (625)
T ss_pred Hhccce-----------------------------------------------ecCCchhHHHHHHHHhhcCcchhHHHH
Confidence 876443 2677777777777654 356667777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcCC-C--------hH-----HHHHHH-------HHHHHCCCCCCHHHHHHHHHHHH
Q 006303 536 MNEMRTVGLSPNHISWTILIDACGGSG-N--------VE-----GALQIL-------KIMREDGMSPDVVAYTTAIKVCV 594 (651)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~li~~~~~~g-~--------~~-----~A~~~~-------~~~~~~~~~p~~~~~~~li~~~~ 594 (651)
|.+++..|..-+...-.-++..+++.. . +. -|..++ .++.+ .+-.....+.....+.
T Consensus 456 w~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 456 WKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLL 533 (625)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHH
Confidence 777777665544444444444444433 1 00 111111 22332 2345666788888899
Q ss_pred hcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 595 RSKRLKQAFSLFEEMKHYQ----IQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644 (651)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 644 (651)
+.|..++|.+++..+.+.+ ..|......-++....+..+...|..++++.
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999996443 2344444556777778888888777766553
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=5.9e-11 Score=119.73 Aligned_cols=510 Identities=13% Similarity=0.073 Sum_probs=328.2
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhh
Q 006303 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (651)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 155 (651)
..+..+...|++++|..++..+++. .|. ...++..++..|-.+|+.+++...+--+-- +.|.+.
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkq--dp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~------ 207 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQ--DPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDY------ 207 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--Ccc------chhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCh------
Confidence 3344455569999999999999998 665 355667778889999999999887755544 556543
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCC-----ccHHH
Q 006303 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-----ILFCN 226 (651)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-----~~~~~ 226 (651)
..+........+.|++++|.-.|.+.++.. |.+....-.-...|.+.|+...|..-|.++ |+.+ ..-..
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 223333334556899999999999999866 777777777788999999999998766553 5332 12223
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCC-CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH-----------
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF----------- 294 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----------- 294 (651)
.+..+...++-+.|.+.++.....+. .-+...++.++..|.+...++.+......+..+...+|..-|
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 56777888888999999988876332 245667889999999999999999998888773333333222
Q ss_pred ----------------HHHHHhh-cCChHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 006303 295 ----------------NSLMNVN-AHDLKFTLEVYKNMQKLGVM--ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (651)
Q Consensus 295 ----------------~~ll~~~-~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 355 (651)
...+... .+..+....+...+...+.. -+...|.-+.++|...|++.+|..+|..+....
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~- 444 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE- 444 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-
Confidence 1111111 13445555566666666533 356788889999999999999999999998632
Q ss_pred cCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------Hc
Q 006303 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML--------QA 427 (651)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------~~ 427 (651)
.--+...|-.+..+|...|.+++|.+.|++.+... +-+...-..|-..+.+.|+.++|.+++..+. ..
T Consensus 445 ---~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 445 ---GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred ---cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 12347789999999999999999999999999763 2245566677788899999999999999854 22
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCccccccc
Q 006303 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (651)
Q Consensus 428 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (651)
+..|.........+.+.+.|+.++-+..-..|.......... ....+..+......
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~-----------f~~~~k~r~~~~~~------------- 576 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYI-----------FPRNKKKRRRAIAG------------- 576 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHhhcc-------------
Confidence 345555556666777888898888666666665432211100 00000000000000
Q ss_pred ccccCCCHHHHHHHHHHHhh--c---HHHH---HHHHHHHHHcCCCCcH--HHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 508 RFSFKPTTTTYNILMKACCT--D---YYRV---KALMNEMRTVGLSPNH--ISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 508 ~~~~~~~~~~~~~ll~~~~~--~---~~~a---~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
.+..........++.+..+ + .+.+ ...+.--...|+..+. ..+.-++..+++.+++++|+.+...+...
T Consensus 577 -~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~ 655 (895)
T KOG2076|consen 577 -TTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEA 655 (895)
T ss_pred -ccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 0001111122222222211 0 0000 0111112222333322 24566777888899999999998888763
Q ss_pred C--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC--CCH-HHHHHHHHHHHhcCC
Q 006303 578 G--MSPDV---VAYTTAIKVCVRSKRLKQAFSLFEEMKHY-QIQ--PNL-VTYITLLRARSRYGS 633 (651)
Q Consensus 578 ~--~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~--p~~-~~~~~l~~~~~~~g~ 633 (651)
. ..++. ..=...+.+....+++..|.+++..|... +.. |.. ..|+..++.+.+.|+
T Consensus 656 ~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 656 YIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred hhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2 12222 12245667778888999999999988742 222 222 345545666666554
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=4.5e-10 Score=109.18 Aligned_cols=497 Identities=12% Similarity=0.040 Sum_probs=258.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
...++..-|.+ +..|...+.. ..+...-..++...++. -|++... -.+.......++|..+|.+
T Consensus 338 vA~Avr~~P~S-v~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~L----------WKaAVelE~~~darilL~r 401 (913)
T KOG0495|consen 338 VANAVRFLPTS-VRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVRL----------WKAAVELEEPEDARILLER 401 (913)
T ss_pred HHHHHHhCCCC-hhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHHH----------HHHHHhccChHHHHHHHHH
Confidence 44455555555 4444333222 23333344555555555 4443221 1223344455556666666
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
..+. -|. .+++ +..+.+..-++.|..++.+..+. -|++...|..-.+.=-..|+.+...++.++.
T Consensus 402 Avec--cp~------s~dL----wlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 402 AVEC--CPQ------SMDL----WLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred HHHh--ccc------hHHH----HHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6652 221 1111 22333345566666666666552 2555566655555555566666555554431
Q ss_pred ---CC-----CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 218 ---PR-----ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 218 ---~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
.. +...|..=...|-+.|.+--+..+....+..|++- -..+|+.-.+.|.+.+.++-|..+|...++--.
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 11 12334444555555566666666666665555442 234566666666666666666666665554311
Q ss_pred cccHHHHHHHHHh--hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHH
Q 006303 288 TLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (651)
Q Consensus 288 ~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 365 (651)
-+...|...... .-|..+....+|++....- +-....|......+-..|++..|..++.++.+. .+.+..+
T Consensus 548 -~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~-----~pnseei 620 (913)
T KOG0495|consen 548 -CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA-----NPNSEEI 620 (913)
T ss_pred -chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-----CCCcHHH
Confidence 133334333332 1245555566666655531 222333434444555556666666666665542 1234455
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
|-.-+..-..+..++.|..+|.+.... .|+...|..-+....-.+..++|.+++++.++.- +.-...|-.+...+.+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHH
Confidence 666666666666666666666665543 3455555555555555566666666666655541 2222345555555666
Q ss_pred cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH
Q 006303 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 525 (651)
.++.+.|.+.|..-... -|+..-+..++.-+
T Consensus 698 ~~~ie~aR~aY~~G~k~-------------------------------------------------cP~~ipLWllLakl 728 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-------------------------------------------------CPNSIPLWLLLAKL 728 (913)
T ss_pred HHHHHHHHHHHHhcccc-------------------------------------------------CCCCchHHHHHHHH
Confidence 66666666655542221 22222222222211
Q ss_pred h---hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC----C--------------------
Q 006303 526 C---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED----G-------------------- 578 (651)
Q Consensus 526 ~---~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-------------------- 578 (651)
- +..-+|..+++.....+. -+...|-..|.+-.+.|+.+.|..++.+..+. |
T Consensus 729 eEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence 1 133344444444433321 13344444444444444444444444333321 0
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 579 -----MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (651)
Q Consensus 579 -----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 646 (651)
..-|+...-.+...+....++++|.+.|.+..+.+ +-+..+|.-+.....++|.-++-++++..|..
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 23467777788888999999999999999998653 33457888899999999988877777766653
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=2.6e-11 Score=112.28 Aligned_cols=410 Identities=13% Similarity=0.107 Sum_probs=246.9
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
.....+.+.-.+.+.|.+++|+..|+.+... .|+ +-+-.+++..++.-|+.++..+.|.+|+.....|+..
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn-------~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~ddd 345 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APN-------FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDD 345 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHh--Ccc-------HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcc
Confidence 3445566667778889999999999988887 666 2222355556777888889999999998765555443
Q ss_pred c--------cchhhHHHHH-HHHHHhhcc---hHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC
Q 006303 150 F--------DGSGFKLLKN-ECQRLLDSG---EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (651)
Q Consensus 150 ~--------~~~~~~~l~~-~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (651)
- +..+++--++ -...-.... +.++++-.--++...-+.|+.......-+..+-.....+.|.
T Consensus 346 kyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~------ 419 (840)
T KOG2003|consen 346 KYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI------ 419 (840)
T ss_pred cccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh------
Confidence 1 1112211111 000111111 222333333333333232322211111111111111111111
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH-HHh-cCCHHHHHHHHHHHHhCCCcccHHHHH
Q 006303 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGI-CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~ 295 (651)
..--+-..-|.++|+++.|++++.-..+.+-..-..+-+.|... |.. ..++.+|.+.-+..... |.+--.
T Consensus 420 ----dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~ 491 (840)
T KOG2003|consen 420 ----DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAA 491 (840)
T ss_pred ----hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHH
Confidence 11112344577889999999888877664433222223333222 222 34577776666655432 222222
Q ss_pred HHHH----hh-cCChHHHHHHHHHHHHCCCCCCHHhHHHH---HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHH
Q 006303 296 SLMN----VN-AHDLKFTLEVYKNMQKLGVMADMASYNIL---LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (651)
Q Consensus 296 ~ll~----~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (651)
++.+ ++ .|+++.|.+.|++.... |..+-.+| .-.+-..|++++|.+.|-.+..+ +..+.....
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-----l~nn~evl~ 562 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-----LLNNAEVLV 562 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-----HHhhHHHHH
Confidence 2222 12 27888888888888764 33332233 23456778889998888877654 445677777
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006303 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (651)
Q Consensus 368 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (651)
.+.+.|-...+...|++++.+.... ++.|....+.|...|-+.|+..+|++.+-+--.- ++.+..+...|..-|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 8888888888888888888776654 4557778888888888888888888776554332 4667778888888888888
Q ss_pred ChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh
Q 006303 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527 (651)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 527 (651)
-+++++.+|++..- +.|+..-|..++..|.+
T Consensus 641 f~ekai~y~ekaal-------------------------------------------------iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 641 FSEKAINYFEKAAL-------------------------------------------------IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHHHHh-------------------------------------------------cCccHHHHHHHHHHHHH
Confidence 88888888886532 47888888888887763
Q ss_pred ---cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCC
Q 006303 528 ---DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563 (651)
Q Consensus 528 ---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 563 (651)
++.+|..++++..+. ++-|......|++.+...|-
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 678888888877664 44577777777777776663
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=1.4e-10 Score=117.09 Aligned_cols=291 Identities=12% Similarity=0.117 Sum_probs=209.1
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.|+.++|..++.+++... |.....|..|+..|-+.|+.+++....-. -|.+...|..+.+...+.|.+..|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 499999999999999865 88899999999999999999999876433 377779999999999999999999999
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc------CChHHHHHHHHHHHH
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKFTLEVYKNMQK 317 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~------~~~~~a~~~~~~m~~ 317 (651)
|.+.++... ++....-.-...|-+.|+...|.+.|.++.....+.|..-+..++.... ++.+.|.+.++....
T Consensus 230 y~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999998543 3444555566778999999999999999988755444444445554322 455788888877765
Q ss_pred C-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhh----------------------hc-CCccccHHHHHHHHHHH
Q 006303 318 L-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE----------------------AK-GVLKLDVFTYSTIVKVF 373 (651)
Q Consensus 318 ~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----------------------~~-~~~~~~~~~~~~l~~~~ 373 (651)
. +-..+...++.++..+.+...++.+........... .- ..+.++..+ -.++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 3 223456678888888888888888887776665410 00 001222222 1233344
Q ss_pred HcccCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 006303 374 ADAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (651)
Q Consensus 374 ~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (651)
.+.+..+....+...+.... +.-+...|..+..+|.+.|++..|+.+|..+......-+..+|-.+..+|...|.++.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 44444455555555555554 3334556777778888888888888888888776555556677778888888888888
Q ss_pred HHHHHHHhhhc
Q 006303 452 AFRLFRSWTLS 462 (651)
Q Consensus 452 a~~~~~~~~~~ 462 (651)
|.+.|+.....
T Consensus 468 A~e~y~kvl~~ 478 (895)
T KOG2076|consen 468 AIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHhc
Confidence 88888777654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=2e-08 Score=98.06 Aligned_cols=402 Identities=11% Similarity=0.053 Sum_probs=275.6
Q ss_pred HHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 006303 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS 252 (651)
Q Consensus 173 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 252 (651)
.=..++++.++.- |+++-.|- +-....+.+.|.-++.++...-....-|.-+|++..-|+.|.++++...+. +
T Consensus 364 ~K~RVlRKALe~i--P~sv~LWK----aAVelE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~-i 436 (913)
T KOG0495|consen 364 NKKRVLRKALEHI--PRSVRLWK----AAVELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREI-I 436 (913)
T ss_pred HHHHHHHHHHHhC--CchHHHHH----HHHhccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 3344555555533 55544443 334456666676666665332233334556778888899999999998875 4
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCC--H
Q 006303 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDL----RSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMAD--M 324 (651)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~--~ 324 (651)
+.+..+|-+-...=-.+|+.+.+.+++.+- ...|+..+..-|-.-...+. |..-.+..+....+..|+.-. .
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 456677777666667888888888877653 44577777777765555443 667777888888877776432 4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 404 (651)
.||+.-...|.+.+.++-|..+|....+. ++-+...|...+..=-..|..++...+|+++...- +-....|...
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-----fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ 590 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-----FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMY 590 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHH
Confidence 68888888999999999999999988874 45667788888887788899999999999998773 3356667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhh
Q 006303 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484 (651)
Q Consensus 405 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (651)
...+-..|++..|..++....+.. +.+...|-.-+..-..+..+++|..+|.+....
T Consensus 591 ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~---------------------- 647 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI---------------------- 647 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----------------------
Confidence 777888899999999999998875 346678888888888899999999999876542
Q ss_pred hccccccCCCCccCCCcccccccccccCCCHHHHH--HHHHHHhhcHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhcC
Q 006303 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNH-ISWTILIDACGGS 561 (651)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~ 561 (651)
.|+...|. .-+.-|.++.++|.+++++..+. -|+. ..|..+...+-+.
T Consensus 648 ---------------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 648 ---------------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred ---------------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 44444443 23334456777777777777663 3443 3566666667677
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 562 GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (651)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 641 (651)
++++.|...|..-.+. ++-.+..|-.+.+.--+.|.+-+|..++++..-.+ +-|...|...|+.=.|.|+.+.|+..+
T Consensus 699 ~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 7777776666554442 22234455555555566667777777777766432 445666777777777777777666533
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=3.5e-11 Score=120.47 Aligned_cols=284 Identities=10% Similarity=-0.067 Sum_probs=209.9
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCC-ccHHHHHHHHhhcCCHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-ILFCNFVREFGKKRDLVSALR 242 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-~~~~~l~~~~~~~g~~~~a~~ 242 (651)
.|+++.|.+.+.+..+.. |.+...+.....+..+.|+++.|.+++... |.+. .+.......+...|+++.|++
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999998877644 544555556677888999999999998874 4443 244446888899999999999
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC-----ChHHHHHHHHHHHH
Q 006303 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----DLKFTLEVYKNMQK 317 (651)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-----~~~~a~~~~~~m~~ 317 (651)
.++.+.+..+ -+..++..+...+...|++++|.+.+..+.+.++.+.............+ ..+...+.+..+.+
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999998642 36678899999999999999999999999998765333221111122211 11222334444433
Q ss_pred CC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHH---HHHHHHHHHcccCHHHHHHHHHHHHH
Q 006303 318 LG---VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQMALKVKEDMLS 391 (651)
Q Consensus 318 ~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~ 391 (651)
.. .+.+...+..+...+...|+.++|.++++...+. .||... ...........++.+.+.+.++...+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 32 1237888889999999999999999999999873 345442 12223333456788899999988887
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 392 AGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 392 ~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.. +-|. .....+...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 63 2244 566788999999999999999999644444578999899999999999999999999997643
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=1.1e-10 Score=116.35 Aligned_cols=248 Identities=9% Similarity=0.052 Sum_probs=135.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYN--ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
|+++.+.+.+.++.+. .|+..... .....+...|+++.|...++.+.+. .+-+......+...|.+.|+++
T Consensus 132 g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-----~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 132 GDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-----APRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred CCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHhHH
Confidence 4555555555555442 23332222 2245566667777777776666652 1334455666666667777777
Q ss_pred HHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006303 381 MALKVKEDMLSAGVTPNT-------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (651)
+|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 777777666665433211 12222333333333444445555544322 2345566666666777777777777
Q ss_pred HHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHH
Q 006303 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533 (651)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~ 533 (651)
+++++..+. .|+............++.+++.
T Consensus 284 ~~L~~~l~~-------------------------------------------------~~~~~l~~l~~~l~~~~~~~al 314 (398)
T PRK10747 284 QIILDGLKR-------------------------------------------------QYDERLVLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHHHHHHhc-------------------------------------------------CCCHHHHHHHhhccCCChHHHH
Confidence 776655432 2332211111111113455555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 534 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
+..+...+.. +-|...+..+...|.+.|++++|.+.|+.+.+. .|+...|..+...+.+.|+.++|.+++++-.
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555432 224455666677777777777777777777763 5677776677777777777777777776654
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=3.7e-12 Score=124.18 Aligned_cols=259 Identities=12% Similarity=0.115 Sum_probs=175.7
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcC-CCccccchHHHHHHHHhcCCCh-HHHHHHhhhCCCCCccHHHHHHHHhhcC
Q 006303 158 LKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVKELDEEFRIVQLCVNKPDV-NLAIRYACIVPRADILFCNFVREFGKKR 235 (651)
Q Consensus 158 l~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~l~~~~~~~g 235 (651)
+.++..+|...+++++|.++|+.+.... ...++.+.++..+..+-+.-.. -.|..+.+..|..+++|..+..+|.-++
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQk 435 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQK 435 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhh
Confidence 3444444555555555555555554322 2233444444444333221111 1334444555677788888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh---h--cCChHHHH
Q 006303 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV---N--AHDLKFTL 309 (651)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~---~--~~~~~~a~ 309 (651)
+.+.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+..+.. |...||+.--. | .++++.|+
T Consensus 436 dh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred HHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHH
Confidence 88888888888887 455 5778888888888888888888888876643 66666655442 2 25777777
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 006303 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (651)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 389 (651)
-.|+...+-+ +.+.+....+...+.+.|+.++|+++|+++..+. +.|+..--..+..+...+++++|+..++++
T Consensus 510 ~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 510 FHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7777777654 3366677778888888899999999999888752 344555555677778888999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006303 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (651)
Q Consensus 390 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 429 (651)
++. ++-+...|..+...|.+.|+.+.|+.-|..+.+.+.
T Consensus 584 k~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 584 KEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 876 233556777888888899999999888888876643
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=4.9e-09 Score=98.24 Aligned_cols=414 Identities=11% Similarity=0.086 Sum_probs=298.8
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCCHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSA 240 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a 240 (651)
-.+.+++..|.+++++.+... ..+...|...+..=.+......|..++++ +|+-+..|.-.+.+=...|++..|
T Consensus 83 Eesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHH
Confidence 344688899999999988744 56677788888888888889999888776 477778888877777888999999
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh--hcCChHHHHHHHHHHHHC
Q 006303 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318 (651)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~ 318 (651)
.++|+.-.+ ..|+..+|++.++.=.+...++.|..+|+...-. .|++..|--.... ..|....+..+|....+.
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999998777 6799999999999999999999999999998765 4788888776664 457888899999887663
Q ss_pred -CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc--HHHHHHHHHHHHcccCH---HHHHH-----HH
Q 006303 319 -GV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWW---QMALK-----VK 386 (651)
Q Consensus 319 -~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~---~~a~~-----~~ 386 (651)
|- ..+...+.+....=.++..++.|.-+|+-.... ++.+ ...|..+...=-+-|+. ++++- -+
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 21 011223333333333566788888888887763 2223 33444444433344544 33332 23
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH-----HHH---HhcCChhHHHHHH
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILL-----QAC---VEACQFDRAFRLF 456 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll-----~~~---~~~g~~~~a~~~~ 456 (651)
+.++..+ +-|-.+|-..++.-...|+.+...++|++.+..- +|-.. .|...| -+| ....+.+.+.++|
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444443 4478888889998889999999999999998763 44221 122222 222 2467888888888
Q ss_pred HHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh------hcHH
Q 006303 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC------TDYY 530 (651)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~------~~~~ 530 (651)
+..++. ++...+||.-+--.|+ .+..
T Consensus 390 q~~l~l------------------------------------------------IPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 390 QACLDL------------------------------------------------IPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHhh------------------------------------------------cCcccchHHHHHHHHHHHHHHHcccH
Confidence 877652 2445566665555544 2677
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 531 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
.|.+++..++ |..|...+|-..|..-.+.+++|.+.+++++.++-+. -|..+|......-...|+.+.|..+|+-.+
T Consensus 422 ~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 422 GARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 8888888765 4678889999999988899999999999999998542 267888888887788899999999999888
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 611 HYQ-IQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 611 ~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
+.. +......|.+.|.-=...|.++.|+.+++
T Consensus 499 ~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 499 SQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred cCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 543 33344667777777778888888877443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6.4e-12 Score=122.57 Aligned_cols=281 Identities=12% Similarity=0.107 Sum_probs=197.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--ccHHHHHHHHHhhcCChHH---HH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMNVNAHDLKF---TL 309 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~~~~---a~ 309 (651)
=+..+|+..|..+.++ +.-..++...+..+|...+++++|.++|+.+.+...- -+...|.+.|.-....++. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567899999886654 2234577888899999999999999999999876321 3567788877765543332 22
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHH
Q 006303 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKED 388 (651)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 388 (651)
.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+ +.| ...+|+.+..=+.....+|.|...|+.
T Consensus 412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ------LDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc------cCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 222222 34678999999999999999999999999887 445 677888888888889999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhccccccc
Q 006303 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468 (651)
Q Consensus 389 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 468 (651)
.+.... .+-..|.-+...|.+.++++.|+-.|+++.+-+ +.+.+....+...+.+.|+.++|++++++....+..
T Consensus 481 Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k--- 555 (638)
T KOG1126|consen 481 ALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK--- 555 (638)
T ss_pred hhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---
Confidence 876532 244566677888999999999999999998765 445667777888888899999999999887643321
Q ss_pred ccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-c
Q 006303 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSP-N 547 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p-~ 547 (651)
.|-.....+.+.-...++++|++.++++++. .| +
T Consensus 556 -------------------------------------------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~e 590 (638)
T KOG1126|consen 556 -------------------------------------------NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQE 590 (638)
T ss_pred -------------------------------------------CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--Ccch
Confidence 2222223333333334566666666666652 34 3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
..+|-.+...|-+.|+.+.|+.-|.-+.+.
T Consensus 591 s~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 344555556666666666666666666553
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=7.2e-11 Score=118.27 Aligned_cols=224 Identities=9% Similarity=-0.009 Sum_probs=134.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS-SLINAC 408 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~ 408 (651)
....+...|+++.|...++.+.+. .+-+...+..+...+...|++++|.+.+..+.+.++. +...+. .-..++
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~ 232 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEM-----APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE 232 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 355566667777777777766652 1334455666667777777777777777777666543 222221 111111
Q ss_pred ---HhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 409 ---ANAGLVEQAMHLFEEMLQAGC---EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 409 ---~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
...+..+.+.+.+..+.+... +.++..+..+...+...|+.++|.+++++..+..
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~------------------- 293 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL------------------- 293 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-------------------
Confidence 222223333334444444321 1366677777777777777777777777766542
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCHH-----HHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-cH--HHHHHH
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT-----TYNILMKACCTDYYRVKALMNEMRTVGLSP-NH--ISWTIL 554 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p-~~--~~~~~l 554 (651)
||.. .+......-.++.+.+.+.++...+. .| |+ ....++
T Consensus 294 ------------------------------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sL 341 (409)
T TIGR00540 294 ------------------------------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRAL 341 (409)
T ss_pred ------------------------------CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHH
Confidence 2221 11111111113455666666666553 23 33 566788
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 555 IDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
.+.|.+.|++++|.+.|+........|+...+.++...+.+.|+.++|.++|++..
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888999999999999854443357888888888899999999999999888764
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=1.6e-13 Score=130.48 Aligned_cols=255 Identities=17% Similarity=0.124 Sum_probs=100.9
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 244 (651)
+...|++++|++++++......+|.+...|..++..+...++ ++.|++.+
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~------------------------------~~~A~~ay 67 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGD------------------------------YDEAIEAY 67 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc------------------------------cccccccc
Confidence 344688888888886544333234454545444444444444 44444444
Q ss_pred HHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCChHHHHHHHHHHHHCC-CC
Q 006303 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLG-VM 321 (651)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~-~~ 321 (651)
+++...+.. +...+..++.. ...+++++|.++++...+.. ++...+...+..+ .++++.+..+++.+.... .+
T Consensus 68 ~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 68 EKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred ccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 444443221 23334444443 34445555554444433321 2222233333321 144455555555443321 24
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
.+...|..+...+.+.|+.++|.+.|++..+. .|.|....+.++..+...|+.+++..+++...... +.|...+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~ 217 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLW 217 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHH
Confidence 57778888889999999999999999999884 23357788889999999999999888888877653 4456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 402 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
..+..++...|+.++|+.+|++..+.. +.|+.+...+.+++...|+.++|.++.++..
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 888999999999999999999988864 5578888889999999999999999887654
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.4e-09 Score=102.26 Aligned_cols=428 Identities=12% Similarity=0.048 Sum_probs=250.4
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCC-hhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
...+...+.-|-++|++++|+..|.+.+..... |- .+.+....|...|+|+++++---+.++ +.|+
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi---------FYsNraAcY~~lgd~~~Vied~TkALE--l~P~-- 181 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI---------FYSNRAACYESLGDWEKVIEDCTKALE--LNPD-- 181 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch---------hhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcH--
Confidence 345566677888899999999999999998544 32 235556668999999999999988887 5563
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh-CCCCCccHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI-VPRADILFCNFV 228 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~l~ 228 (651)
-...|.+-...+-..|+.++|+.=..-+.-.+... +.. ...++.-..+.--...+.+-+.. -++ .....+.+
T Consensus 182 ----Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s-~~~~~eR~Lkk~a~~ka~e~~k~nr~p-~lPS~~fi 254 (606)
T KOG0547|consen 182 ----YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NAS-IEPMAERVLKKQAMKKAKEKLKENRPP-VLPSATFI 254 (606)
T ss_pred ----HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cch-hHHHHHHHHHHHHHHHHHHhhcccCCC-CCCcHHHH
Confidence 23445555556666788887765333222111110 000 01111111111111122222221 111 11122223
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHH----Hhc-CCHHHHHHHHHHHHhCC-Ccc-----c-------
Q 006303 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC----GIC-GDYMKSRAIYEDLRSQN-VTL-----N------- 290 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-g~~~~a~~~~~~~~~~g-~~~-----~------- 290 (651)
..|...=..+ .......+.......+...+ ... ..+..|.+.+.+-.... ..+ |
T Consensus 255 ~syf~sF~~~--------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A 326 (606)
T KOG0547|consen 255 ASYFGSFHAD--------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMA 326 (606)
T ss_pred HHHHhhcccc--------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHH
Confidence 3332210000 00000000011111111111 110 12333333333211100 000 1
Q ss_pred -HHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHH
Q 006303 291 -IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (651)
Q Consensus 291 -~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (651)
...+........|+.-.+..-|+..+.....+ ...|..+..+|....+.++.++.|....++ -+-+..+|..-
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-----dp~n~dvYyHR 400 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDL-----DPENPDVYYHR 400 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhc-----CCCCCchhHhH
Confidence 11122222235588889999999998865332 233778888999999999999999999885 24566788888
Q ss_pred HHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006303 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (651)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (651)
...+.-.+++++|..=|++.++.... +...|--+.-+..+.+++++++..|++.++. ++..+.+|+.....+...+++
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhH
Confidence 88888899999999999999987533 6667777777778899999999999999887 567788999999999999999
Q ss_pred hHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHH-HHHHhhc
Q 006303 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL-MKACCTD 528 (651)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~ 528 (651)
++|.+.|+........... .-+.+.+.+--.+ +--+-++
T Consensus 479 d~A~k~YD~ai~LE~~~~~----------------------------------------~~v~~~plV~Ka~l~~qwk~d 518 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHL----------------------------------------IIVNAAPLVHKALLVLQWKED 518 (606)
T ss_pred HHHHHHHHHHHhhcccccc----------------------------------------ccccchhhhhhhHhhhchhhh
Confidence 9999999987654221000 0001111111111 1113357
Q ss_pred HHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
+.+|..++.+..+. .| ....|..|...-.+.|++++|+++|++...
T Consensus 519 ~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777763 33 334677777777777777777777777654
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=4.9e-10 Score=111.59 Aligned_cols=285 Identities=11% Similarity=0.040 Sum_probs=206.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHH--HHHHH
Q 006303 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMAS-YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS--TIVKV 372 (651)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~ 372 (651)
.++....|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+ ..|+..... .....
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~------~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE------LADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCcchHHHHHHHHHH
Confidence 344445577777777776655532 22333 33334555789999999999999987 456654433 33678
Q ss_pred HHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHh
Q 006303 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------CCNILLQACVE 445 (651)
Q Consensus 373 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~ 445 (651)
+...|+++.|...++++.+... -+......+...|.+.|++++|.+++..+.+.+..++.. .|..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998763 377888899999999999999999999999987543221 22233333334
Q ss_pred cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH
Q 006303 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 525 (651)
..+.+...++++.+... .+.+......+...+
T Consensus 242 ~~~~~~l~~~w~~lp~~------------------------------------------------~~~~~~~~~~~A~~l 273 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK------------------------------------------------TRHQVALQVAMAEHL 273 (398)
T ss_pred hcCHHHHHHHHHhCCHH------------------------------------------------HhCCHHHHHHHHHHH
Confidence 44455555555554322 133455555566665
Q ss_pred h--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006303 526 C--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (651)
Q Consensus 526 ~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 603 (651)
. ++.++|..++.+..+. .|+.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.|++++|.
T Consensus 274 ~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4 5899999999998884 4555332 3444456699999999999998863 235667889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644 (651)
Q Consensus 604 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 644 (651)
+.|+.+.+. .|+..++..+..++.+.|+.++|.++++.=
T Consensus 349 ~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 349 LAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999964 799999999999999999999998866543
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5.3e-10 Score=105.04 Aligned_cols=407 Identities=13% Similarity=0.062 Sum_probs=253.6
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCcc-ccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPL-ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
+.+..+.++|++++|+..|.+.++ ..|+ +..| .+....|...|+|++.++-..+.++.. |+...++..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFY-------sNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~R 188 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFY-------SNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLR 188 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhh-------hhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHH
Confidence 345558899999999999999998 5666 3322 222335556899999999999988855 888888888
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHH--------HHHh-cCC--CCcHHhHHHHHHH
Q 006303 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD--------ASKK-HLS--SPNMYICRTIIDV 265 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~-~~~--~~~~~~~~~l~~~ 265 (651)
-.+++-..|++.+|+.- .+...+...+....-...+.+++. +-.. .+. -|+....+.....
T Consensus 189 RA~A~E~lg~~~eal~D--------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~s 260 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFD--------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGS 260 (606)
T ss_pred HHHHHHhhccHHHHHHh--------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhh
Confidence 88888889999888742 222233333333322223333332 2112 221 1333333333333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC---ChHHHHHHHHHHHHC---CCCC---C------HHhHHHH
Q 006303 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKL---GVMA---D------MASYNIL 330 (651)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~---~~~~a~~~~~~m~~~---~~~~---~------~~~~~~l 330 (651)
+...-. ..+...+.+.|...-..+=..+.+ .+..+...+.+-... .... | ..+....
T Consensus 261 F~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 261 FHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred cccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 221100 000000001111111111111111 222232222221110 0001 1 1122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
...+.-.|+...|.+-|+....+. +.+...|-.+..+|....+-++.+..|.+..+.+.. +..+|..-.....-
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~-----~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLD-----PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFL 406 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcC-----cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHH
Confidence 223345689999999999998742 223334888889999999999999999999987644 67778888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccc
Q 006303 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490 (651)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (651)
.+++++|..=|++.+... +-+...|..+..+..+.+.+++++..|++....
T Consensus 407 L~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---------------------------- 457 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---------------------------- 457 (606)
T ss_pred HHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------
Confidence 889999999999998764 334556666666777889999999999987754
Q ss_pred cCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCc-------HH--HHHHHHHHHh
Q 006303 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN-------HI--SWTILIDACG 559 (651)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~-------~~--~~~~li~~~~ 559 (651)
++.-+..|+.....+. ++++.|.+.|+..++. .|+ .. +--+++..-.
T Consensus 458 --------------------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 458 --------------------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred --------------------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhch
Confidence 2333556666666665 5899999999998874 333 22 2222222222
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
.+++..|..++.+.++.+.+ ....|..|...-.++|+.++|+++|++-.
T Consensus 516 -k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 516 -KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 28899999999999985322 34578899999999999999999999875
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.6e-09 Score=101.18 Aligned_cols=284 Identities=12% Similarity=0.096 Sum_probs=207.2
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCcc--HHHHHHHHhhcCCHHHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVREFGKKRDLVSALR 242 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~ 242 (651)
+.+.|....|++.|...+... |-...+|..|...+. +.+.+..+-..+|.+.-. -.-+..++......++++.
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit---~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELIT---DIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHhhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhc---hHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788889999988877633 667677776665542 233333333334433211 1225566777778899999
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--ccHHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 006303 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (651)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~ 320 (651)
-.+.....|.+-+...-+....+.-...|+++|+.+|+++.+..+- -|..+|..++.+....-. +..+.+-...=-
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk--Ls~LA~~v~~id 326 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK--LSYLAQNVSNID 326 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH--HHHHHHHHHHhc
Confidence 9999888888655555555555566778999999999999887432 367788887776553222 222222111101
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 400 (651)
+-.+.|...+.+-|.-.++.++|...|+...++. +.....|+.|..-|...++...|...++..++.. +.|-..
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRA 400 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRA 400 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHH
Confidence 2356677888888888899999999999998852 3346689999999999999999999999999875 458899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 401 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
|..|.++|.-.+...-|+-+|++..+.. +.|...|.+|.++|.+.++.++|++.|......
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999999999998875 567889999999999999999999999876543
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3e-09 Score=99.50 Aligned_cols=351 Identities=13% Similarity=0.103 Sum_probs=233.3
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH-
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN- 299 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~- 299 (651)
...+......+-+.|....|+..|-..... .| ..|.+-+....-..+.+.+..+...+ ..|.......+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P--~~W~AWleL~~lit~~e~~~~l~~~l-----~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YP--WFWSAWLELSELITDIEILSILVVGL-----PSDMHWMKKFFLK 234 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CC--cchHHHHHHHHhhchHHHHHHHHhcC-----cccchHHHHHHHH
Confidence 344444556667778888898888887652 22 33443333332233333333222222 112222222222
Q ss_pred -hhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc
Q 006303 300 -VNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (651)
Q Consensus 300 -~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (651)
++. +..+++.+-.+.+...|.+.+...-+....+.....|+++|+.+|+++.+.. .- ---|..+|..++-.--..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PY-Rl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PY-RLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CC-cchhHHHHhHHHHHHhhh
Confidence 222 3677888888888888876666655555666677889999999999998731 11 112456676666433222
Q ss_pred cCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006303 377 KWWQ-MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (651)
Q Consensus 377 ~~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 455 (651)
.++. -|..+++ -. +--..|...+.+.|+-.++.++|..+|++..+.+ +.....|+.+..-|...++...|++-
T Consensus 313 skLs~LA~~v~~---id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN---ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH---hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 2211 1112211 11 2234567778888888899999999999999875 44556788888889999999999999
Q ss_pred HHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHH
Q 006303 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVK 533 (651)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~ 533 (651)
|+...+-+ +.|-..|-.|-.+|. +-..-|+
T Consensus 387 YRrAvdi~------------------------------------------------p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 387 YRRAVDIN------------------------------------------------PRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHHhcC------------------------------------------------chhHHHHhhhhHHHHHhcchHHHH
Confidence 98876532 457778888888886 4567788
Q ss_pred HHHHHHHHcCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 006303 534 ALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH- 611 (651)
Q Consensus 534 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 611 (651)
-.|++.... +| |...|.+|.++|.+.++.++|++.|.+....| ..+...+..+.+.|-+.++.++|.++|++-++
T Consensus 419 yYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 419 YYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888874 45 78899999999999999999999999998865 33668899999999999999999999987764
Q ss_pred ---CCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 006303 612 ---YQIQPN--LVTYITLLRARSRYGSLHEVQQ 639 (651)
Q Consensus 612 ---~g~~p~--~~~~~~l~~~~~~~g~~~~a~~ 639 (651)
.|..-+ ...-..|..-+.+.+++++|..
T Consensus 496 ~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 496 SELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 343322 2223335556777888877765
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.9e-10 Score=102.29 Aligned_cols=283 Identities=11% Similarity=0.071 Sum_probs=215.4
Q ss_pred chHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCC--------ccHHHHHHHHhhcCCHHHH
Q 006303 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--------ILFCNFVREFGKKRDLVSA 240 (651)
Q Consensus 169 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a 240 (651)
.+.++|+++|-+|.+.. |...++...+++.|-+.|..+.|++++..+..++ .+...|..-|...|-++.|
T Consensus 49 ~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 88899999999999844 7778889999999999999999999998874433 3344578888999999999
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH----HHHHHHHHhh--cCChHHHHHHHHH
Q 006303 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNVN--AHDLKFTLEVYKN 314 (651)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~--~~~~~~a~~~~~~ 314 (651)
..+|..+.+.+. --..+...|+..|-...+|++|+++-+++.+.+.++.. ..|.-+.... ..+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999887432 23567889999999999999999999999887655442 2233333322 2588999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc--HHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
..+.+ +..+..-..+.+.....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+.++....+..+.+.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 98764 224445556778899999999999999999872 233 346788999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHhhhcccc
Q 006303 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQ 465 (651)
Q Consensus 393 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~ 465 (651)
.. ....-..+-.......-.+.|..++.+-... +|+...+..+|+.-.. -|.+.+...+++.|....+.
T Consensus 279 ~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 279 NT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred cC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 43 3333344444444445567777776666655 7999999999986543 34567777788888765543
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=5.8e-13 Score=126.60 Aligned_cols=227 Identities=15% Similarity=0.162 Sum_probs=66.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh-hcC
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAH 303 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~ 303 (651)
.+...+.+.|++++|+++++...... ...+...|..+...+...++++.|++.++++...+.. +...+..++.. ..+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 45677778888888888886554433 2235556666667777788888888888888766433 33334444433 235
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
++++|.+++....+. .+++..+..++..+...++++++.++++.+... ...+.+...|..+...+.+.|+.++|+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL---PAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH----T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666666665554433 234455555666666666666666666665531 112345555666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
+++++.++..+ -|......++..+...|+.+++.++++...+.. +.++..+..+..+|...|+.++|+..|++..
T Consensus 167 ~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 167 RDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 66666665421 135555566666666666666666666555543 3334455556666666666666666665543
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=2.4e-09 Score=95.53 Aligned_cols=286 Identities=13% Similarity=0.111 Sum_probs=198.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHH------HHHHHHHHHHc
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF------TYSTIVKVFAD 375 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~ 375 (651)
+++.++|.+.|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++.+.+.. .||.. ..-.|..-|..
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-------spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-------SPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-------CCCCchHHHHHHHHHHHHHHHH
Confidence 356677777777776632 22344566778888888889999888888875 34432 34456777888
Q ss_pred ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhH
Q 006303 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ----CCNILLQACVEACQFDR 451 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~ 451 (651)
.|-++.|+.+|..+.+.|. --......|+..|....++++|+++-+++.+.+-.+... .|.-+...+....+.+.
T Consensus 120 aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred hhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 8888999999888887542 245567778888888888999988888888765443322 34555555666778888
Q ss_pred HHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH---hhc
Q 006303 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC---CTD 528 (651)
Q Consensus 452 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~ 528 (651)
|..++.+..+. .|+.+--++++.-. -++
T Consensus 199 A~~~l~kAlqa-------------------------------------------------~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 199 ARELLKKALQA-------------------------------------------------DKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHHHHHHhh-------------------------------------------------CccceehhhhhhHHHHhccc
Confidence 88888876654 33333333333221 247
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (651)
++.|.+.++...+.+..--..+...|..+|.+.|+.++...++.++.+... +...-..+-..-....-.+.|..++.+
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHH
Confidence 888888888888876555677889999999999999999999999988533 333334444433344445666666655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 006303 609 MKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (651)
Q Consensus 609 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~ 649 (651)
-... +|+...+..++..-..-+....+++-+-++++|+.
T Consensus 308 Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 308 QLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5533 69999999999987665554457888888998875
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=1.8e-07 Score=91.37 Aligned_cols=505 Identities=13% Similarity=0.130 Sum_probs=296.2
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
+..+..-++.+..+|+...-...|++.++. -|-.--.. -+..+ +.-.-..|-++.++.+|++-+. +.|..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALra--LpvtqH~r-IW~ly---l~Fv~~~~lPets~rvyrRYLk--~~P~~-- 171 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRA--LPVTQHDR-IWDLY---LKFVESHGLPETSIRVYRRYLK--VAPEA-- 171 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CchHhhcc-chHHH---HHHHHhCCChHHHHHHHHHHHh--cCHHH--
Confidence 667888888899999999999999999887 33210000 01111 2223456777899999999987 56643
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCC-----ccccchHHHHHHHHhcCCChHHHHHH-------hhhCC
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-----VKELDEEFRIVQLCVNKPDVNLAIRY-------ACIVP 218 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~ 218 (651)
....+..|. ..+++++|-+.+..++..... +.+...|..+....++..+.-.-..+ ..+.+
T Consensus 172 ~eeyie~L~-------~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 172 REEYIEYLA-------KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred HHHHHHHHH-------hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 122333333 389999999999887643211 44556677777766654443322222 11122
Q ss_pred C-CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc----------------C------CHHHH
Q 006303 219 R-ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC----------------G------DYMKS 275 (651)
Q Consensus 219 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~a 275 (651)
+ -...|++|.+.|.+.|+++.|..+|++..+.- ....-|..+.+.|+.. | +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 2 23789999999999999999999999988742 2333344444444321 1 12233
Q ss_pred HHHHHHHHhCCC-----------cccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC------HHhHHHHHHHHHhcC
Q 006303 276 RAIYEDLRSQNV-----------TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD------MASYNILLKACCLAG 338 (651)
Q Consensus 276 ~~~~~~~~~~g~-----------~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~g 338 (651)
..-|+.+...+. .-++..|..-...+.++..+-...|.+.... +.|. ...|..+.+.|-..|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 444444443321 1234455555555666777777788777653 1221 346778888999999
Q ss_pred CHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-----------------CCHHHH
Q 006303 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-----------------PNTITW 401 (651)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----------------~~~~~~ 401 (651)
+++.|..+|++..+..-.+ +..=..+|......=.++.+++.|+.+++......-. .+...|
T Consensus 402 ~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999987632111 1111234555555556778888888888776532111 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhh
Q 006303 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (651)
Q Consensus 402 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (651)
...++..-..|-++....+++++.+..+. ++.+......-+..+.-++++.++|++-...-
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LF------------------ 541 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLF------------------ 541 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC------------------
Confidence 66677767778888888899998887643 22222222222345566788888887533210
Q ss_pred hhhhccccccCCCCccCCCcccccccccccCCC-HHHHHHHHHHH----hh-cHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006303 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-TTTYNILMKAC----CT-DYYRVKALMNEMRTVGLSPNHISWTILI 555 (651)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~----~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li 555 (651)
. -|+ ...|+..+.-+ .+ ..+.|..+|++..+ |++|...-+--|+
T Consensus 542 ----------------------------k-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 542 ----------------------------K-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred ----------------------------C-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 0 233 23555555443 33 78999999999998 6766443222122
Q ss_pred --HHHhcCCChHHHHHHHHHHHHC---------------------CCCCCHHHHHHHHH----------------HHHhc
Q 006303 556 --DACGGSGNVEGALQILKIMRED---------------------GMSPDVVAYTTAIK----------------VCVRS 596 (651)
Q Consensus 556 --~~~~~~g~~~~A~~~~~~~~~~---------------------~~~p~~~~~~~li~----------------~~~~~ 596 (651)
..--+.|-...|+.++++.... |+..+...|.--|. .=.+.
T Consensus 592 YA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtkl 671 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKL 671 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhh
Confidence 2222346667777777765432 23222333322221 12334
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 597 KRLKQAFSLFEEMKHY-QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 597 g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
|.++.|..++....+. .-+.+...|.+.=.-=.++|+-+-.++.+++=+
T Consensus 672 GEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikR 721 (835)
T KOG2047|consen 672 GEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKR 721 (835)
T ss_pred hhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666554432 223445667777777777777555555444433
No 51
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=6.7e-09 Score=93.70 Aligned_cols=458 Identities=10% Similarity=0.023 Sum_probs=250.9
Q ss_pred HHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHH
Q 006303 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (651)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (651)
+.-+....++..|+.+++.-...+.+-+ ...-..++..+.+.|++++|+..+..+.+..-.|.. +..
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e------l~v 95 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE------LGV 95 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc------cch
Confidence 3445567899999999998876654433 122234555678999999999999998875433322 122
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCH
Q 006303 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (651)
Q Consensus 158 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~ 237 (651)
.+..| +.-.|.+.+|..+-.+. |+.+.....+...-.+.++.++-..++..+.+..+-..+|......+-.+
T Consensus 96 nLAcc--~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 96 NLACC--KFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred hHHHH--HHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Confidence 22222 22368999998887664 44445566677777788999999999888888778888888888888999
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCcccHHH-HHHHHHh----hcCCh------
Q 006303 238 VSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYV-FNSLMNV----NAHDL------ 305 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~ll~~----~~~~~------ 305 (651)
.+|+++|..++.. .|+....|.-+. +|.+..-++-+.+++.-..+. -||... .|..... +.|+.
T Consensus 168 QeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 168 QEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 9999999999984 356556665544 355666677777777766554 234332 2222221 11211
Q ss_pred ---------------------------HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 006303 306 ---------------------------KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (651)
Q Consensus 306 ---------------------------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (651)
+.|++++--+... -+..-..|+--|.+.+++++|..+.+.+.-
T Consensus 244 ~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P------ 313 (557)
T KOG3785|consen 244 ELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP------ 313 (557)
T ss_pred HHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC------
Confidence 1122222111110 112222333345566777777666655431
Q ss_pred ccccHHHHHHHHHHH-----HcccCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 359 LKLDVFTYSTIVKVF-----ADAKWWQMALKVKEDMLSAGVTPNTI-TWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
..|-......++.+- .......-|.+.|+..-+++..-|.. -...+..++.-..++++++-+++.+..--...|
T Consensus 314 ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD 393 (557)
T KOG3785|consen 314 TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD 393 (557)
T ss_pred CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 122222222222111 11122444555555444444332222 223344455555567777777766665543444
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccC
Q 006303 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (651)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (651)
...+| +..+++..|++.+|.++|-.+.... -
T Consensus 394 ~Fn~N-~AQAk~atgny~eaEelf~~is~~~------------------------------------------------i 424 (557)
T KOG3785|consen 394 DFNLN-LAQAKLATGNYVEAEELFIRISGPE------------------------------------------------I 424 (557)
T ss_pred hhhhH-HHHHHHHhcChHHHHHHHhhhcChh------------------------------------------------h
Confidence 44443 5566666777777777775543221 2
Q ss_pred CCHHHHHHHHHHH-h--hcHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 513 PTTTTYNILMKAC-C--TDYYRVKALMNEMRTVGLSPNHISWTI-LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588 (651)
Q Consensus 513 ~~~~~~~~ll~~~-~--~~~~~a~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 588 (651)
.|..+|.+++.-| . +.++.|+.++-.+.. ..+..+.-. +..-|.+++.+=-|-+.|+++.. ..|++..|.
T Consensus 425 kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe- 498 (557)
T KOG3785|consen 425 KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE- 498 (557)
T ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC-
Confidence 3455555555433 2 345555555443322 223333332 33556666666666666666665 356665553
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 006303 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRARSRYGS 633 (651)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 633 (651)
|+-....-+|..+....-.|- ..+..-++..+...++
T Consensus 499 --------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 499 --------GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred --------CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 222233345555543322222 2344455555554444
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=1.3e-09 Score=100.33 Aligned_cols=283 Identities=12% Similarity=0.060 Sum_probs=143.1
Q ss_pred cCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHH
Q 006303 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (651)
Q Consensus 84 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (651)
.|+|.+|+.+..+-.+.+..|. . .+-..+.+....|+.+.+-..+.++-+.. +++ .....+....
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-------l-~~l~aA~AA~qrgd~~~an~yL~eaae~~--~~~-----~l~v~ltrar 161 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-------L-AYLLAAEAAQQRGDEDRANRYLAEAAELA--GDD-----TLAVELTRAR 161 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-------H-HHHHHHHHHHhcccHHHHHHHHHHHhccC--CCc-----hHHHHHHHHH
Confidence 6888888888888777766654 1 12234555667888888888888877742 222 2223333334
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.....|+++.|..-++++.+.+ |........ ...+|.+.|++.....+
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~--pr~~~vlrL------------------------------a~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMT--PRHPEVLRL------------------------------ALRAYIRLGAWQALLAI 209 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhC--cCChHHHHH------------------------------HHHHHHHhccHHHHHHH
Confidence 4455788888888887777655 444444444 44455555555555555
Q ss_pred HHHHHhcCCCCc-------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH--hhcCChHHHHHHHHH
Q 006303 244 YDASKKHLSSPN-------MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKN 314 (651)
Q Consensus 244 ~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~~~~a~~~~~~ 314 (651)
+..+.+.|.-.+ ..+|+.+++-....+..+.-...++...+. .+-+...-.+++. ..+|+.++|.++..+
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 555555443222 124444444444334444433344433322 0111111111111 223455555555555
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 394 (651)
..+.+..|+ ... +-.+.+-++.+.-++..++-.+. .+-++..+.+|...|.+++.|.+|...|+..++.
T Consensus 289 ~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-----h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-- 357 (400)
T COG3071 289 ALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-----HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-- 357 (400)
T ss_pred HHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--
Confidence 544443333 111 11222334444444444433321 2233345555555566666666666666655443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 395 TPNTITWSSLINACANAGLVEQAMHLFEEML 425 (651)
Q Consensus 395 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 425 (651)
.|+..+|+.+..++.+.|+...|.+.+++..
T Consensus 358 ~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 358 RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4555666666666666666666665555544
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=3.9e-07 Score=85.83 Aligned_cols=419 Identities=10% Similarity=0.064 Sum_probs=292.7
Q ss_pred hhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhc
Q 006303 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (651)
Q Consensus 124 ~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (651)
..++++..|..+|++.++.+ .. ...+.++-+..-.++..+..|..++++.+.. -|.-...|...+..=-.
T Consensus 84 esq~e~~RARSv~ERALdvd--~r------~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD--YR------NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc--cc------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHH
Confidence 46888999999999999743 11 2334555444555678899999999998763 35555566666655567
Q ss_pred CCChHHHHHHhhhC---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006303 204 KPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (651)
Q Consensus 204 ~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 280 (651)
.|+...|.++|.+- .++..+|.+.+..=.+-+.++.|..+|+...- +.|++.+|-.....=.++|....+..+|+
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 89999999999873 55668999999999999999999999999887 45899999888888889999999999999
Q ss_pred HHHhC-CCc-ccHHHHHHHHHh--hcCChHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHH--------
Q 006303 281 DLRSQ-NVT-LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEI-------- 346 (651)
Q Consensus 281 ~~~~~-g~~-~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~-------- 346 (651)
...+. |-. .+...+.+.... .++.++.|.-+|.-....- +.+ ...|......=-+-|+.....++
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 87664 211 122233333322 2357888888888777642 222 34455554444455665444332
Q ss_pred HHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HhcCCHHH
Q 006303 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-------ITWSSLINAC---ANAGLVEQ 416 (651)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~---~~~g~~~~ 416 (651)
|+...+ + .+.|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|..+--+| ....+++.
T Consensus 311 YE~~v~---~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 311 YEKEVS---K--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred HHHHHH---h--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222 1 3567778888888888889999999999999865 44422 1232222222 34678899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccC
Q 006303 417 AMHLFEEMLQAGCEPNSQCCNILLQACV----EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492 (651)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (651)
+.++++..++. ++-...||..+=-.|+ ++.+...|.+++....-
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG------------------------------- 432 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG------------------------------- 432 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc-------------------------------
Confidence 99999988874 3444556655544443 56788888888865442
Q ss_pred CCCccCCCcccccccccccCCCHHHHHHHHHHH--hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHH
Q 006303 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQI 570 (651)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 570 (651)
.-|-..+|-..|..- .++++.+..+++...+.+. -+..+|.-....-...|+.+.|..+
T Consensus 433 ------------------~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 433 ------------------KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred ------------------cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 356666666555543 3588999999999988542 2677888888888889999999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 571 LKIMREDG-MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 571 ~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
|+-.++.. +......|.+.|+--...|.+++|..+++++++.
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99988732 2223456777777778899999999999998753
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=6.8e-08 Score=89.21 Aligned_cols=293 Identities=12% Similarity=0.122 Sum_probs=210.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHH
Q 006303 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (651)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 371 (651)
.+-..+++...|++..|++...+-.+.+- .....|..-..+....|+.+.+-.++.++.+.. | .++....-....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--~--~~~l~v~ltrar 161 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--G--DDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC--C--CchHHHHHHHHH
Confidence 44455666677888888888888777652 234456566677788899999999999888731 1 345566777888
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHH
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------CCNILLQACV 444 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~ 444 (651)
.....|+++.|..-++++.+.+.. +........++|.+.|++.....++..+.+.+.-.+.. +|+.+++-..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999887643 67778888999999999999999999999988654443 4555555444
Q ss_pred hcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHH
Q 006303 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (651)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 524 (651)
..+..+.-...++..... .+.++..-.+++.-
T Consensus 241 ~~~~~~gL~~~W~~~pr~------------------------------------------------lr~~p~l~~~~a~~ 272 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK------------------------------------------------LRNDPELVVAYAER 272 (400)
T ss_pred ccccchHHHHHHHhccHH------------------------------------------------hhcChhHHHHHHHH
Confidence 444444433444433221 12223223333333
Q ss_pred H--hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006303 525 C--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 525 ~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 602 (651)
+ |++.++|.++..+..+.+..|+.. ..-.+.+-++...-.+..++-.+.. .-++..+.+|...|.+.+.|.+|
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHH
Confidence 3 458899999999998887776622 2334567788877777777766532 23457788999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 603 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
.++|+...+ ..|+..+|+-+..++.+.|+.++|.+..+.--
T Consensus 348 ~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 348 SEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999997775 57999999999999999999999988665443
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=1e-08 Score=103.52 Aligned_cols=532 Identities=12% Similarity=0.110 Sum_probs=279.4
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
..|+..+|.+++.-|+..|+.+.|- +|..|........ ...++.++..+.+.++.+.+. .|
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-------e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-------EGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhccccccc-------chhHHHHHhcccccccccCCC-----------CC
Confidence 3344589999999999999999888 8888865532222 333445555556666665543 22
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHH---HHHHHHHHHhc----C-------------CCccccchHHHHHHHHhcCCC
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEM---FVGLMEVLEEF----R-------------LPVKELDEEFRIVQLCVNKPD 206 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~---A~~~~~~~~~~----~-------------~~~~~~~~~~~l~~~~~~~~~ 206 (651)
.. .++..+.+ .|...|+... ..+.++.+... | ..|.........+....-.|-
T Consensus 82 ~a----Dtyt~Ll~---ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~egl 154 (1088)
T KOG4318|consen 82 LA----DTYTNLLK---AYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGL 154 (1088)
T ss_pred ch----hHHHHHHH---HHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHH
Confidence 11 23444444 3334554433 22222222111 1 112222223334444555666
Q ss_pred hHHHHHHhhhCCCCCccHHH--HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 207 VNLAIRYACIVPRADILFCN--FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
++.+.++....|.....-.. ++.-..... ....++.+......-.|+..+|..+++.-...|+.+.|..++.+|.+
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 77777777666654321111 122222222 22333333332221248999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHH
Q 006303 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (651)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 364 (651)
.|+..+.+-|..++.+ .++...+..++.-|.+.|+.|+..|+...+-.+.++|....+.+..+.-. -.+..
T Consensus 233 ~gfpir~HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h--------g~tAa 303 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH--------GFTAA 303 (1088)
T ss_pred cCCCcccccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh--------hhhHH
Confidence 9999999888888877 77888889999999999999999999998888877665332222111100 01122
Q ss_pred HHHHHHHHHHcccCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CCHHHH
Q 006303 365 TYSTIVKVFADAKWW-----QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CE-PNSQCC 436 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~ 436 (651)
.+..++++.....+. .-....+.+..-.|+......|...... ..+|+-+...++-..+..-- .. .++..|
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 233333332222222 2223333333334444444555544443 23566666666655553211 11 123345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcccccccccc-cCCchhhhhhhhh-hccccccCCCCccCCCcccccccccc--cC
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGED-YDGNTDRISNMEH-KDKQSITNTPNFVPNSHYSSFDKRFS--FK 512 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 512 (651)
..++.-|.+.-+..-...++. ...++....+.. .....+.+..... ....... . +............+ ..
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~--~~qgls~~l~se~tp~vsell~~lrkns~lr~lv---~-Lss~Eler~he~~~~~~h 456 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYY--AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLV---G-LSSTELERSHEPWPLIAH 456 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHH--HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHh---h-hhHHHHhcccccchhhhh
Confidence 444544443222111111111 000000000000 0000000000000 0000000 0 00000000000000 01
Q ss_pred CCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC--CCCCCHHHHHH
Q 006303 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED--GMSPDVVAYTT 588 (651)
Q Consensus 513 ~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ 588 (651)
+-...-+.++..|++ +..+++..-+..... . -...|..||+-+......+.|..+.++.... .+..|..-+..
T Consensus 457 ~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 457 LIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 112233444445543 333444332222221 1 1267889999999999999999999888642 34456667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 589 AIKVCVRSKRLKQAFSLFEEMKHYQ-IQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
+.+.+.+.+....+.+++++|.+.- ..| ...++..+++.....|+.+..++..+++.
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 8999999999999999999998532 223 25677778888888888887777555543
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=5.3e-12 Score=83.36 Aligned_cols=50 Identities=36% Similarity=0.618 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (651)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 630 (651)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=2.3e-10 Score=114.91 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=49.3
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCC
Q 006303 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGV 320 (651)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~ 320 (651)
++-.+...|+.|+-.+|..++.-|+..|+.+.|- +|..|.-+....+...|+.++.... ++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455556666666666666666666666666665 6666655544445555555555432 3333332
Q ss_pred CCCHHhHHHHHHHHHhcCCHHH
Q 006303 321 MADMASYNILLKACCLAGNTVL 342 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~ 342 (651)
.|-+.+|+.|+.+|...||+..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 3555556666666665555543
No 58
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.9e-07 Score=90.57 Aligned_cols=223 Identities=15% Similarity=0.043 Sum_probs=138.3
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC--CCccH-HHHHHHHhhc
Q 006303 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILF-CNFVREFGKK 234 (651)
Q Consensus 158 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~l~~~~~~~ 234 (651)
+..-...+...|++++|+....+++..+ |++..++..-+-++.+.+.+++|+.+.+.-+. ....+ ..-+-+..+.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 4444556777899999999999999866 88899999999999999999999977655432 11112 2334445588
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHHHHhhcCChHHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVNAHDLKFTLEVYK 313 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~a~~~~~ 313 (651)
++.++|+..++.... .+..+...-...+-+.|++++|.++|+.+.+.+... +...-..++.+-. +... +
T Consensus 93 nk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-----~l~~-~ 162 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-----ALQV-Q 162 (652)
T ss_pred ccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----hhhH-H
Confidence 999999999983222 233466666777889999999999999998775431 1111122222111 1111 1
Q ss_pred HHHHCCCCCCHHhHHHHH---HHHHhcCCHHHHHHHHHHHHHhhhc----CCcc-----ccH-HHHHHHHHHHHcccCHH
Q 006303 314 NMQKLGVMADMASYNILL---KACCLAGNTVLAQEIYGEVKHLEAK----GVLK-----LDV-FTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~-----~~~-~~~~~l~~~~~~~~~~~ 380 (651)
.+......| ..+|..+. -.+...|++.+|+++++...++..+ +... -.. .+-..|...+...|+-+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 222222222 22444433 3445678888888888877433221 1000 000 11233555666778888
Q ss_pred HHHHHHHHHHHCC
Q 006303 381 MALKVKEDMLSAG 393 (651)
Q Consensus 381 ~a~~~~~~m~~~~ 393 (651)
+|..++...+...
T Consensus 242 ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 242 EASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhc
Confidence 8888887777654
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.9e-07 Score=90.02 Aligned_cols=465 Identities=10% Similarity=0.009 Sum_probs=247.0
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
..-+..+.+-+..+.++.-|+-+-++....+.+|... ..++..+.-.|++++|..++..=.-.+...
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~---------~~~aq~l~~~~~y~ra~~lit~~~le~~d~---- 82 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI---------YWLAQVLYLGRQYERAAHLITTYKLEKRDI---- 82 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH---------HHHHHHHHhhhHHHHHHHHHHHhhhhhhhH----
Confidence 5556667777778889999999999998888888743 245666778888888888776542211111
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHH----hcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (651)
..... +...+....++++|..++.... ...-.+.+. ...-....+.+... .......+..
T Consensus 83 --~cryL---~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~----------~~~l~~n~~~~~~~-~~~essic~l 146 (611)
T KOG1173|consen 83 --ACRYL---AAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA----------ANTLELNSAGEDLM-INLESSICYL 146 (611)
T ss_pred --HHHHH---HHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh----------hceeccCccccccc-ccchhceeee
Confidence 01111 1223445688888888877321 000001000 00000001110000 0001122222
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhC-CCcccHHHHHHH-------
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ-NVTLNIYVFNSL------- 297 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-g~~~~~~~~~~l------- 297 (651)
-...|....+.++|...|.+... .|+..+..+...-... =..++-.++|+.+.-. -...+......+
T Consensus 147 Rgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k 222 (611)
T KOG1173|consen 147 RGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCK 222 (611)
T ss_pred eeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhh
Confidence 33455566777777777777665 3444433333221111 0111112222210000 000011111111
Q ss_pred ------------------------HHh------hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006303 298 ------------------------MNV------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (651)
Q Consensus 298 ------------------------l~~------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 347 (651)
+.. +..++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=
T Consensus 223 ~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~ls 301 (611)
T KOG1173|consen 223 NRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLS 301 (611)
T ss_pred hccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHH
Confidence 111 1135555555555555432 344444544555555555554444444
Q ss_pred HHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
.++.+. .|....+|-++.--|...|++.+|.+.|.+....+.. =...|-.....|.-.|.-|+|+..+...-+.
T Consensus 302 h~LV~~-----yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 302 HKLVDL-----YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred HHHHHh-----CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 444432 2334455555555555556666666666555433211 2234555555666666666666655555442
Q ss_pred CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccc
Q 006303 428 GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506 (651)
Q Consensus 428 ~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (651)
=.. --+..| +.--|.+.++.+.|.+.|.+...
T Consensus 376 ~~G~hlP~LY--lgmey~~t~n~kLAe~Ff~~A~a--------------------------------------------- 408 (611)
T KOG1173|consen 376 MPGCHLPSLY--LGMEYMRTNNLKLAEKFFKQALA--------------------------------------------- 408 (611)
T ss_pred ccCCcchHHH--HHHHHHHhccHHHHHHHHHHHHh---------------------------------------------
Confidence 100 011111 22234455566666666654432
Q ss_pred cccccCC-CHHHHHHHHH-HH-hhcHHHHHHHHHHHHHc----CC-CC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 507 KRFSFKP-TTTTYNILMK-AC-CTDYYRVKALMNEMRTV----GL-SP-NHISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 507 ~~~~~~~-~~~~~~~ll~-~~-~~~~~~a~~~~~~~~~~----~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
+.| |+..++-+-- +| .+.+.+|..+|+..... +- .+ ...+++.|.++|.+++.+++|+..+++.+..
T Consensus 409 ----i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 409 ----IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ----cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 334 3444444422 23 35788999988877632 11 11 3456889999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (651)
Q Consensus 578 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 629 (651)
. +.|..++.++.-.|...|+++.|...|.+.. .+.||..+-..++..+.
T Consensus 485 ~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 485 S-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred C-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 3 4488899999999999999999999999988 57898877777777554
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6e-07 Score=83.17 Aligned_cols=289 Identities=12% Similarity=0.092 Sum_probs=190.4
Q ss_pred CCHHHHHHHHHHHHhc-CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHH
Q 006303 235 RDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (651)
++...+...+--+... -++-|......+.+.+...|+.++|+..|++....+ |+ +..
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py--~i~------------------ 267 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PD--NVE------------------ 267 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hh--hhh------------------
Confidence 4444444443333222 133466677777777778888888888777765431 11 100
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
....|.. .+...|+++....+...+... ..-+...|-.-.......++++.|+.+-++.++..
T Consensus 268 ---------~MD~Ya~---LL~~eg~~e~~~~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 268 ---------AMDLYAV---LLGQEGGCEQDSALMDYLFAK-----VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred ---------hHHHHHH---HHHhccCHhhHHHHHHHHHhh-----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 1112222 234566777766666666542 12344445555555667788888888888887764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccC
Q 006303 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473 (651)
Q Consensus 394 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 473 (651)
+.+...|-.=...+...|+.++|.-.|+..+... +.+...|.-|+.+|...|.+.+|.-.-+.....
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~----------- 397 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL----------- 397 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-----------
Confidence 2255556555667788889999988888887653 356678999999999999988887666544322
Q ss_pred CchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHH-HHHh---hcHHHHHHHHHHHHHcCCCCcHH
Q 006303 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM-KACC---TDYYRVKALMNEMRTVGLSPNHI 549 (651)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~---~~~~~a~~~~~~~~~~~~~p~~~ 549 (651)
+.-+..+...+- ..|. ..-++|.++++...+ +.|+..
T Consensus 398 -------------------------------------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~ 438 (564)
T KOG1174|consen 398 -------------------------------------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYT 438 (564)
T ss_pred -------------------------------------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccH
Confidence 122223333221 2222 135788888888776 456543
Q ss_pred -HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006303 550 -SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (651)
Q Consensus 550 -~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 618 (651)
..+.+...+...|..+++..++++... ..||....+.|.+.+...+.+.+|.+.|....+. .|+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 567777888999999999999999887 4789999999999999999999999999988753 4544
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.2e-11 Score=81.58 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=47.2
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (651)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (651)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=1.1e-09 Score=108.41 Aligned_cols=253 Identities=13% Similarity=0.079 Sum_probs=154.9
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc---CCCcc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPL 147 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~---~~~~~ 147 (651)
..++..+...|...|+++.|+.++++.++.=........+.....++.++..|...+++++|+.+|+++... ...++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 667777999999999999999999998876100000112223455567888899999999999999999875 12222
Q ss_pred ccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCC------CccccchHHHHHHHHhcCCChHHHHHHhhhC----
Q 006303 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL------PVKELDEEFRIVQLCVNKPDVNLAIRYACIV---- 217 (651)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 217 (651)
+.....++.+....|.+.|++++|...++....... .+.-...+..++..|...+++++|..++...
T Consensus 279 ---h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 279 ---HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred ---CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 223455566666678889999999988887654211 1222233444555566666666665554431
Q ss_pred ---CC--C---CccHHHHHHHHhhcCCHHHHHHHHHHHHhcC----C--CC-cHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 218 ---PR--A---DILFCNFVREFGKKRDLVSALRAYDASKKHL----S--SP-NMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 218 ---~~--~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
+. + ..+++.|...|...|++++|.++|++++... . .+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 11 1 1345555555555555555555555544321 1 11 1223444555555555555555555443
Q ss_pred HhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 006303 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (651)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 355 (651)
.. + |+..| .+-...+|..|...|...|++++|+++.+.+....+
T Consensus 436 ~~--------------------------i---~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 436 KD--------------------------I---MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HH--------------------------H---HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 21 1 22222 222356889999999999999999999998875443
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=4.6e-09 Score=104.05 Aligned_cols=256 Identities=16% Similarity=0.143 Sum_probs=177.4
Q ss_pred CCCccHHHHHHHHhhcCCHHHHHHHHHHHHhc-----CC-CCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH
Q 006303 219 RADILFCNFVREFGKKRDLVSALRAYDASKKH-----LS-SPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 291 (651)
....+...|...|..+|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++..
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~------- 269 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT------- 269 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------
Confidence 33456666888888999999998888877653 21 13332 334466777888888888888876543
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc--CCccccHH-HHHH
Q 006303 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDVF-TYST 368 (651)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~-~~~~ 368 (651)
+++.......+--..+++.|..+|.+.|++++|...++...++.+. |...|.+. .++.
T Consensus 270 -------------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 270 -------------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred -------------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 2333222222223557888888999999999999999888776543 22233333 3667
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CC-CHH
Q 006303 369 IVKVFADAKWWQMALKVKEDMLSA---GVTP----NTITWSSLINACANAGLVEQAMHLFEEMLQAG----C--EP-NSQ 434 (651)
Q Consensus 369 l~~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~--~~-~~~ 434 (651)
+...++..+++++|..+++...+. -+.+ -..+++.|...|.+.|++++|.++++++++.. . .+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 778888999999999988876542 1122 23578899999999999999999998886641 1 12 234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCC
Q 006303 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (651)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (651)
.++.|...|.+.+.+.+|.++|.+..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~------------------------------------------------------ 436 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAK------------------------------------------------------ 436 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHH------------------------------------------------------
Confidence 67778888888888888888887533
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 515 TTTYNILMKACCTDYYRVKALMNEMRTVGL-SP-NHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 515 ~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
.+. +..|. .| ...+|..|...|...|++++|+++.+....
T Consensus 437 -------------------~i~---~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 437 -------------------DIM---KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred -------------------HHH---HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 122 22222 13 355899999999999999999999888764
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=5.1e-09 Score=109.16 Aligned_cols=211 Identities=10% Similarity=-0.019 Sum_probs=102.4
Q ss_pred chHHHHHHHHHHHHhcCCCccccchHHHHHHHHhc---------CCChHHHHHHhhhC----CCCCccHHHHHHHHhhcC
Q 006303 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN---------KPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (651)
Q Consensus 169 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 235 (651)
+..++|+..|++.++.. |+....+..++.++.. .+++++|...++++ |.+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 56788999999888754 6666666555544321 12244444443332 333444444445555555
Q ss_pred CHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHH
Q 006303 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (651)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (651)
++++|...|++..+.+ | +...+..+...+...|++++|+..+++..+....
T Consensus 353 ~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-------------------------- 404 (553)
T PRK12370 353 EYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-------------------------- 404 (553)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------------------------
Confidence 5555555555554422 2 2334444445555555555555555554444221
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
+...+..++..+...|++++|...++++... .+| +...+..+..++...|++++|...+.++...
T Consensus 405 --------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~- 470 (553)
T PRK12370 405 --------RAAAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ- 470 (553)
T ss_pred --------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-
Confidence 1222222333344455666666666555431 122 2233444555555666666666666555433
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 394 VTPN-TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 394 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.|+ ....+.+...|...| +.|...++.+.+
T Consensus 471 -~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred -cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 222 222333333444444 355554554443
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=4.1e-07 Score=82.44 Aligned_cols=440 Identities=12% Similarity=0.059 Sum_probs=240.2
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+....++..|+.+++.-...+-+.. .....++..|. ...|++++|+..|+-+..... .+...+..+....-
T Consensus 32 fls~rDytGAislLefk~~~~~EEE-----~~~~lWia~C~--fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~F 102 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEE-----DSLQLWIAHCY--FHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKF 102 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhh-----HHHHHHHHHHH--HhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHH
Confidence 4567788888888887664332221 23444444333 347999999999998887543 33444555655555
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
-.|.+.+|..+....|+++.--..|...--+.++-++-..+.+.+... ..---.|....-..-.+++|+++|.+.
T Consensus 103 yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999998888766666666777778877777766665431 111222333333345789999999998
Q ss_pred HhCCCcccHHHHHHHHHhhc---CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc
Q 006303 283 RSQNVTLNIYVFNSLMNVNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (651)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 359 (651)
...+ |+-...|..+..|- .-++-+.++++-..+. ++.++...|.......+.=.-..|++-.+.+.. .+.
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad---N~~- 250 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD---NID- 250 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh---ccc-
Confidence 8763 44444454444322 3455566666655543 222344444444333332111222222222221 110
Q ss_pred cccHHHHHHHHHHHHcc-----cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006303 360 KLDVFTYSTIVKVFADA-----KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (651)
.. -..+.-++++ ..-+.|++++--+... .| .....|+-.|.+.+++.+|..+.+++. +.++.
T Consensus 251 --~~---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~ 317 (557)
T KOG3785|consen 251 --QE---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPY 317 (557)
T ss_pred --cc---chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChH
Confidence 00 1112222332 3457788877666643 33 334456667889999999999888773 22333
Q ss_pred HHHHHHHHHHhcCCh-------hHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCccccccc
Q 006303 435 CCNILLQACVEACQF-------DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (651)
Q Consensus 435 ~~~~ll~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (651)
-|-.-.-.++..|+- .-|.+.|+-.-.+...-
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec----------------------------------------- 356 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC----------------------------------------- 356 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc-----------------------------------------
Confidence 332211123333432 23333333221111100
Q ss_pred ccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 508 RFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (651)
Q Consensus 508 ~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 587 (651)
..-|...+..+..- +...++.+...++.+..--...|... -.+..+++..|++.+|+++|-++....++ |..+|-
T Consensus 357 --DTIpGRQsmAs~fF-L~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~ 431 (557)
T KOG3785|consen 357 --DTIPGRQSMASYFF-LSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYK 431 (557)
T ss_pred --ccccchHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHH
Confidence 00122221111000 12355666666666555423333333 34677888888888888888777665444 555665
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 588 -TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY-ITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 588 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
.|.++|.+.|+++.|+.++-++ .-..+..+. ..+.+-|.+.+.+--|.+++..++
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4556778888888876665555 333334333 334457777777766666555444
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=1.6e-08 Score=93.81 Aligned_cols=197 Identities=12% Similarity=0.050 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455666666777777777777777666543 2245566666667777777777777777776654 3344556666666
Q ss_pred HHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHH
Q 006303 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 522 (651)
+...|++++|.+.+++......
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~---------------------------------------------------------- 130 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPL---------------------------------------------------------- 130 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccc----------------------------------------------------------
Confidence 6777777777777765542110
Q ss_pred HHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006303 523 KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 523 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 602 (651)
.......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 131 ---------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 131 ---------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred ---------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 00112233334555556666666666666655532 11344555555666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 603 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
.+++++..+. ...+...+..+...+...|+.++|....+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666544 23344455555555556666665555433
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=1.5e-06 Score=85.42 Aligned_cols=246 Identities=12% Similarity=0.040 Sum_probs=140.5
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.+++...++..+.++... |...+.....+-.+...|+.++|....... +.+..-|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 477888888888888733 555565666666666777777777765543 33446677777777777778888888
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HHHHHHHHHh--hcCChHHHHHHHHHHHHCC-
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLG- 319 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~- 319 (651)
|......+. -|...|.-+.-.=+..|+++...+.-..+.+. .|. ...|..+..+ ..|+...|..++++..+..
T Consensus 98 y~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 98 YRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 877776332 24555555544445666776666666665554 222 2334333333 2367777777777776543
Q ss_pred CCCCHHhHHHHH------HHHHhcCCHHHHHHHHHHHHHhhhcCCccccHH-HHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 320 VMADMASYNILL------KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 320 ~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
..|+...+.... ....+.|..+.|.+.+...... ..|.. .-..-...+.+.+++++|..++..++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 234544443322 2334556666666665544321 12222 2234455667777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHH
Q 006303 393 GVTPNTITWSSLINACA-NAGLVEQAM-HLFEEMLQ 426 (651)
Q Consensus 393 ~~~~~~~~~~~ll~~~~-~~g~~~~a~-~~~~~~~~ 426 (651)
.||..-|...+..+. +-.+.-++. .+|....+
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 455555544443333 233333333 44544433
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=1.4e-08 Score=94.12 Aligned_cols=199 Identities=12% Similarity=0.019 Sum_probs=134.9
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------------
Confidence 556678888888899999999998887643 13466777888888888888888888887765421
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
.+...+..+...+...|++++|.+.++.+.... ..+.....+..+...+...|++++
T Consensus 97 --------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 97 --------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP---LYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred --------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHcCCHHH
Confidence 233455556666667777777777777766421 012233455566667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
|...+++..... +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 154 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777776653 224556666777777777777777777777665 24455556666667777777777777766554
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=3.1e-08 Score=103.38 Aligned_cols=261 Identities=12% Similarity=0.028 Sum_probs=173.8
Q ss_pred CHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHH---------cccCHHHHHHHHH
Q 006303 323 DMASYNILLKACCL-----AGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFA---------DAKWWQMALKVKE 387 (651)
Q Consensus 323 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~ 387 (651)
+...|...+.+... .+++++|...|++..+ ..|+ ...|..+..++. ..+++++|...++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 44555555554322 1346788889988887 3444 445555555443 2345889999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccc
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 467 (651)
+..+.+.. +...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++....
T Consensus 329 ~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l----- 401 (553)
T PRK12370 329 KATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL----- 401 (553)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 99887533 67788888888889999999999999998875 445667888888899999999999999987764
Q ss_pred cccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCH-HHHHHH--HHHHhhcHHHHHHHHHHHHHcCC
Q 006303 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNIL--MKACCTDYYRVKALMNEMRTVGL 544 (651)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l--l~~~~~~~~~a~~~~~~~~~~~~ 544 (651)
.|+. ..+..+ +....+++++|...++++.+...
T Consensus 402 --------------------------------------------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~ 437 (553)
T PRK12370 402 --------------------------------------------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL 437 (553)
T ss_pred --------------------------------------------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc
Confidence 3332 111121 22223578899999988876532
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHH
Q 006303 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV-VAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYI 622 (651)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~ 622 (651)
+-+...+..+..++...|++++|...+.++... .|+. ...+.+...|...| ++|...++++.+ .+..+....+.
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~ 513 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLL 513 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHH
Confidence 224556777888888999999999999887664 3443 34455556677777 478887777763 23344444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 006303 623 TLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (651)
Q Consensus 623 ~l~~~~~~~g~~~~a~~~~~~~~~m~~~ 650 (651)
.++.++ .|+.+.+.. ++++.++
T Consensus 514 ~~~~~~--~g~~~~~~~----~~~~~~~ 535 (553)
T PRK12370 514 PLVLVA--HGEAIAEKM----WNKFKNE 535 (553)
T ss_pred HHHHHH--HhhhHHHHH----HHHhhcc
Confidence 555554 455444333 2555544
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=7.5e-08 Score=92.74 Aligned_cols=283 Identities=13% Similarity=0.064 Sum_probs=216.4
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChH----HHHHHhhhCCCCCccHHHHHHH
Q 006303 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
..++......+-..+++.+..++++.+.+.. |.....+..-+..+.+.|+.. .+.++.+..|..+.+|.+++-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 3445555556666899999999999998855 555444544455666666654 4566677789999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HHHHHHHHHhhcCChHHH
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNVNAHDLKFT 308 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~a 308 (651)
|.-.|++.+|++.|.+... +.|. ...|-.+...|+-.|..++|...|...-+.=..-. +..|..+=....++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999998876 3343 56899999999999999999999988765421112 233333333445889999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-C-ccccHHHHHHHHHHHHcccCHHHHHHHH
Q 006303 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-V-LKLDVFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
.+.|.+..... +-|+..++-+.-.....+.+.+|..+|+......+.- . ..--..+++.|..+|.+.+++++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999987653 4478888888888888899999999999887422111 0 1124557889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
++.+... +-+..++..+.-.|...|+++.|.+.|.+.... .|+..+...++..+..
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 9999875 448999999999999999999999999998864 7777777777765543
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=2.7e-06 Score=85.80 Aligned_cols=292 Identities=13% Similarity=0.054 Sum_probs=154.1
Q ss_pred HHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHH
Q 006303 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (651)
Q Consensus 120 ~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (651)
...+...|++++|++.|++-... +.. ....+-.-+..+.+.|+.++|..+|..++..+ |++..++..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~D-------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILD-------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 34467889999999999775542 222 12223333335556899999999999999877 777776666666
Q ss_pred HHhcCC-----ChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHH-HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc
Q 006303 200 LCVNKP-----DVNLAIRYACIV----PRADILFCNFVREFGKKRDLV-SALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (651)
Q Consensus 200 ~~~~~~-----~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (651)
+..-.. +.+.-..+++.+ |.....-...+. +..-..+. .+...+..+..+|+++ +|+.|-..|...
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~ 156 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-FLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDP 156 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc-cCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcCh
Confidence 552222 222223333222 211111110011 11101111 1222333333444311 333333333322
Q ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCC----------CCCCHH--hHHHHHHHHHhc
Q 006303 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG----------VMADMA--SYNILLKACCLA 337 (651)
Q Consensus 270 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~----------~~~~~~--~~~~ll~~~~~~ 337 (651)
.+.+-..+++..... .+...+ -+|... ++..+...|...
T Consensus 157 ~K~~~i~~l~~~~~~-----------------------------~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 157 EKAAIIESLVEEYVN-----------------------------SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred hHHHHHHHHHHHHHH-----------------------------hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 222222222222211 111110 123332 334445666677
Q ss_pred CCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006303 338 GNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (651)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 416 (651)
|++++|.+.++.... ..|+ +..|..-...|-+.|++++|.+.++.....+.. |...=+.....+.+.|+.++
T Consensus 208 g~~~~Al~~Id~aI~------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 208 GDYEKALEYIDKAIE------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred CCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHH
Confidence 777777777777665 3455 446666677777777777777777777766543 66666667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHH--------HHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 417 AMHLFEEMLQAGCEPNSQC--------CNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
|.+++....+.+..|.... ......+|.+.|++..|++.|..+.+
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777765543222111 12334567777777777777766543
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=7.2e-06 Score=80.83 Aligned_cols=453 Identities=13% Similarity=0.064 Sum_probs=281.1
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+...+++...+...+.++.. .|... .++.+. ...+...|+.++|......-+... +.+...|..++-.+.
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k--~~eHg---eslAmk---GL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK--FPEHG---ESLAMK---GLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh--CCccc---hhHHhc---cchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHh
Confidence 45788899999999988883 33322 122111 112334699999999888776643 778889999999999
Q ss_pred cCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHH
Q 006303 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRA 277 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 277 (651)
...++++|.+.|..+ +++...+.-|.-.-.+.|+++..........+. .| ....|..+..++.-.|++..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998764 556677777777778889999999988888873 34 35568888888888999999999
Q ss_pred HHHHHHhCCC-cccHHHHHHHHH--------hhcCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHH
Q 006303 278 IYEDLRSQNV-TLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIY 347 (651)
Q Consensus 278 ~~~~~~~~g~-~~~~~~~~~ll~--------~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~ 347 (651)
+++...+... .|+...+..... .-+|..+.|++.+..-... ..|-. .-..-...+.+.+++++|..+|
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999887642 355444433222 2345667776666554332 12322 2334456778899999999999
Q ss_pred HHHHHhhhcCCccccHHHHHH-HHHHHHccc-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 348 GEVKHLEAKGVLKLDVFTYST-IVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (651)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 425 (651)
..+.. ..||...|.. +..++.+-. ..+....+|....+. .+.....-..=+....-..-.+..-+++..+.
T Consensus 243 ~~Ll~------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 243 RRLLE------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHh------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 99987 3466665554 445554333 333333666665543 11111111111111111223455667778888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCccccc
Q 006303 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505 (651)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (651)
+.|+++- +..+...|-. ..++- +++++...-.....++. .+.+
T Consensus 316 ~Kg~p~v---f~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~------------------------------~f~~ 358 (700)
T KOG1156|consen 316 SKGVPSV---FKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTG------------------------------MFNF 358 (700)
T ss_pred hcCCCch---hhhhHHHHhc---hhHhH-HHHHHHHHHHhhccccc------------------------------CCCc
Confidence 8886553 3333333322 11111 33333221110000000 0000
Q ss_pred cccc-ccCCCHHHHHHHHH--HH--hhcHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 006303 506 DKRF-SFKPTTTTYNILMK--AC--CTDYYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGM 579 (651)
Q Consensus 506 ~~~~-~~~~~~~~~~~ll~--~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (651)
.... .-.|....|....- .+ .++++.|....+..+.+ .|+.+ .|..-.+.+.+.|++++|..++++..+.+
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 0000 12566555554433 33 35889999999998874 56543 56666788999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHH--HHHHhcCCHHHHH
Q 006303 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV--------TYITLL--RARSRYGSLHEVQ 638 (651)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~l~--~~~~~~g~~~~a~ 638 (651)
.+|...=..-..-..++...++|.++.....+.|. +.. .|..+- .+|.+.|++.+|.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 34554433566667889999999999999987774 332 233332 3666777776543
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.1e-06 Score=85.49 Aligned_cols=385 Identities=13% Similarity=0.097 Sum_probs=216.1
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhH
Q 006303 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (651)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 156 (651)
=+.-...+|++++|.....+++..+ |+ ...++.+-+.++...++|++|+.+.+.=... .- +...+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pd------d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~----~~~~~- 82 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PD------DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LV----INSFF- 82 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CC------cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hh----cchhh-
Confidence 3455567899999999999999885 44 3566778888899999999998655432210 11 11111
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-------------------
Q 006303 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------------------- 217 (651)
Q Consensus 157 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------- 217 (651)
+-++.+.| +.++.++|+..++ +..+.+......-.+.|.+.+++++|..+|..+
T Consensus 83 -fEKAYc~Y-rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 83 -FEKAYCEY-RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred -HHHHHHHH-HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34444444 3477777777776 223334334455566677777777777776653
Q ss_pred ------------CCCC----ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCC--------C-----CcH-HhHHHHHHHHH
Q 006303 218 ------------PRAD----ILFCNFVREFGKKRDLVSALRAYDASKKHLS--------S-----PNM-YICRTIIDVCG 267 (651)
Q Consensus 218 ------------~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~-----~~~-~~~~~l~~~~~ 267 (651)
|..+ ..+++..-.+...|++.+|+++++...+.+. . -.. ..---|..++.
T Consensus 156 ~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 156 AAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 1111 2233445566778999999999998832211 0 011 12233455677
Q ss_pred hcCCHHHHHHHHHHHHhCCCcccH----HHHHHHHHhhc-CC-hH-HHHHHHHH------------H-------------
Q 006303 268 ICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNVNA-HD-LK-FTLEVYKN------------M------------- 315 (651)
Q Consensus 268 ~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~~-~~-~~-~a~~~~~~------------m------------- 315 (651)
..|+.++|.++|....+.... |. ..-|.++.... .+ ++ ..+..++. +
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998887533 22 22233332211 00 00 00000000 0
Q ss_pred ------------HH--CCCCCC--HHhHHHHHHHHHhc--CCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcc
Q 006303 316 ------------QK--LGVMAD--MASYNILLKACCLA--GNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADA 376 (651)
Q Consensus 316 ------------~~--~~~~~~--~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 376 (651)
.+ ...++. ...+.+++..+.+. .....+.+++....+ + .+- ...+.-.++......
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~----~-~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD----G-HPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----c-CCchhHHHHHHHHHHHHhc
Confidence 00 001111 12222333322221 124445555544432 2 111 234455566677778
Q ss_pred cCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH----HH
Q 006303 377 KWWQMALKVKE--------DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA--GCEPNSQCCNILL----QA 442 (651)
Q Consensus 377 ~~~~~a~~~~~--------~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll----~~ 442 (651)
|+++.|.+++. .+.+.+..| .+...+...+.+.++.+.|..++.+..+. .-.+.......++ ..
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 88888888887 444443333 34445566666666666666666665542 0112222223332 23
Q ss_pred HHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHH
Q 006303 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 522 (651)
-.+.|+.++|..+++++.+.+ .+|..+...++
T Consensus 468 ~lr~G~~~ea~s~leel~k~n------------------------------------------------~~d~~~l~~lV 499 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN------------------------------------------------PNDTDLLVQLV 499 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC------------------------------------------------CchHHHHHHHH
Confidence 345688888888888877642 67788889999
Q ss_pred HHHhh-cHHHHHHHHHHH
Q 006303 523 KACCT-DYYRVKALMNEM 539 (651)
Q Consensus 523 ~~~~~-~~~~a~~~~~~~ 539 (651)
.+|+. +.+.|..+-.++
T Consensus 500 ~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 500 TAYARLDPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCHHHHHHHhhcC
Confidence 99987 888888776554
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=1.1e-05 Score=79.35 Aligned_cols=302 Identities=12% Similarity=0.155 Sum_probs=179.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc------------------C------ChHHHHHHH
Q 006303 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------------------H------DLKFTLEVY 312 (651)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~------------------~------~~~~a~~~~ 312 (651)
..|..|.+.|.+.|.++.|.++|++....- .....|..+..+|+ + +++..+.-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 468999999999999999999999987652 23333333333221 1 223334444
Q ss_pred HHHHHCC-----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHH
Q 006303 313 KNMQKLG-----------VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 313 ~~m~~~~-----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 380 (651)
+.+...+ -+.+...|..-+.. ..|+..+-..+|.++.+.-......- -...|..+...|-.+|+++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 4443321 01233344433333 34667777777777765311110111 1235888999999999999
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------CCCHHHHHHHH
Q 006303 381 MALKVKEDMLSAGVTPN---TITWSSLINACANAGLVEQAMHLFEEMLQAGC-----------------EPNSQCCNILL 440 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------------~~~~~~~~~ll 440 (651)
.|..+|++......+-- ..+|......-.+..+++.|+++++.....-- ..+...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999887643321 24566666666677888899988887654211 11233455555
Q ss_pred HHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHH-HHH
Q 006303 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT-TYN 519 (651)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 519 (651)
+.-...|-++....+|+++....+. .|-.+ -|.
T Consensus 485 DleEs~gtfestk~vYdriidLria----------------------------------------------TPqii~NyA 518 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA----------------------------------------------TPQIIINYA 518 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC----------------------------------------------CHHHHHHHH
Confidence 5555667778888888877765431 23221 122
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHH
Q 006303 520 ILMKACCTDYYRVKALMNEMRTVGLSPNHI-SWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAI--KVC 593 (651)
Q Consensus 520 ~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~~ 593 (651)
.++.-. .-++++.+++++-+..-..|+.. .|+..+.-+.+ .-.++.|..+|++..+ |.+|...-+--|+ ..=
T Consensus 519 mfLEeh-~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 519 MFLEEH-KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHhh-HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 222111 13567777777666553445544 67777766544 2368999999999998 5655433222121 222
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006303 594 VRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 594 ~~~g~~~~A~~~~~~m~ 610 (651)
-+.|....|++++++..
T Consensus 597 Ee~GLar~amsiyerat 613 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERAT 613 (835)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 33577777888887763
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=6.3e-07 Score=90.30 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=47.3
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+++ |+...|...
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~ 77 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRG 77 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH
Confidence 45567789999999988775543 32334556677788888999999999999998884 344444333
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=8.8e-09 Score=91.93 Aligned_cols=223 Identities=12% Similarity=-0.019 Sum_probs=157.4
Q ss_pred HhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 117 ~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
+.+...|.+.|.+.+|...|+..++.-..|+ +|-.|.+ .|.+-...+.|+.++.+-+.. .|.+++....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~d------TfllLsk---vY~ridQP~~AL~~~~~gld~--fP~~VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD------TFLLLSK---VYQRIDQPERALLVIGEGLDS--FPFDVTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchh------HHHHHHH---HHHHhccHHHHHHHHhhhhhc--CCchhhhhhh
Confidence 3456667788888888888887776433332 3333444 455567778888888776653 3777777777
Q ss_pred HHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCH
Q 006303 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (651)
+.+.+...++.++|.++++.. +.+.++...+...|.-.++.+.|++.|..+++.|+ -+...|+.+.-+|.-.+++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 777777778888888777664 44456666777788888999999999999999887 5677888888888888999
Q ss_pred HHHHHHHHHHHhCCCcccH--HHHHHHHHh--hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006303 273 MKSRAIYEDLRSQNVTLNI--YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348 (651)
Q Consensus 273 ~~a~~~~~~~~~~g~~~~~--~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 348 (651)
+-++..|++....--.|+. ..|..+-.. -.|++..|.+.|+-....+ ..+...+|.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 9999888888765444432 233333222 3367777777777776654 2356778888777778888888888888
Q ss_pred HHHH
Q 006303 349 EVKH 352 (651)
Q Consensus 349 ~~~~ 352 (651)
....
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 7765
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=4e-08 Score=87.83 Aligned_cols=225 Identities=14% Similarity=0.046 Sum_probs=120.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
-+.++|.+.|.+.+|.+.++...+ ..|-+.||..|-+.|.+..+.+.|+.++.+-++. ++-|+.....+.+.+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLT------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhh------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 355566666666666666665554 3455566666666666666666666666665554 122333333444555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccc
Q 006303 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (651)
...++.++|.++++...+.. +.++.....+...|.-.++.+-|+..|+.+.+.++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~------------------------ 355 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA------------------------ 355 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC------------------------
Confidence 55666666666666666553 34444455555555556666666666666655442
Q ss_pred cccCCCCccCCCcccccccccccCCCHHHHHHHHH--HHhhcHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhcCCCh
Q 006303 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPN--HISWTILIDACGGSGNV 564 (651)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 564 (651)
-+...|+.+-- .|++.++-++--|......--.|+ ..+|-.+.......|++
T Consensus 356 ------------------------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 356 ------------------------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred ------------------------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence 11222222221 123455555555555544322222 33455555555555666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 565 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
..|.+.|.-....+- -+...+|.|.-.-.+.|++++|..+++...
T Consensus 412 nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 666666665554321 234556655555566666666666666554
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=1.6e-07 Score=80.22 Aligned_cols=197 Identities=13% Similarity=-0.006 Sum_probs=143.4
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
..+...|.-.|...|++..|..-++..++. +|+.+.. +..++..|-+.|+.+.|.+.|++... +.|+.-.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a------~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~Gd 104 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLA------HLVRAHYYQKLGENDLADESYRKALS--LAPNNGD 104 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHH------HHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccc
Confidence 677888999999999999999999999999 8875443 33445558899999999999999998 5565432
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (651)
...-|.. -+...|++++|...|++.......+.....+..++-+..+.|+++.|..++++. |..+.....
T Consensus 105 VLNNYG~------FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 105 VLNNYGA------FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred hhhhhhH------HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 2222222 333478999999999998887666666677777777777777777777776653 555566677
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
+.....+.|++..|...++.....+. ++..+.-..|+.-.+.|+.+.+.+.=..+.+
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777777776655 6666666666766677776666555444443
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=3.4e-07 Score=87.28 Aligned_cols=116 Identities=11% Similarity=-0.007 Sum_probs=59.8
Q ss_pred cchHHHHHHHHHHHHhcCC-Cc-cccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRL-PV-KELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
.+..+.++..+.+++.... .+ .....+..++..+...|+.++|...|... |.+..+|+.+...+...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566777888877775431 11 11233444555555555555555444432 344455555555555555555555
Q ss_pred HHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 242 RAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
..|+...+ +.| +..+|..+..++...|++++|++.|+...+.
T Consensus 119 ~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55555554 223 2344444555555555555555555555443
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=3.5e-06 Score=76.28 Aligned_cols=329 Identities=12% Similarity=0.081 Sum_probs=190.7
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
..--..+...+..+|++.+|+..|....+. +|+.|.... .-+..|...|+-..|+.=|.+.++ +.|+-
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aif------rRaT~yLAmGksk~al~Dl~rVle--lKpDF-- 105 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIF------RRATVYLAMGKSKAALQDLSRVLE--LKPDF-- 105 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHH------HHHHHHhhhcCCccchhhHHHHHh--cCccH--
Confidence 444556778888889999999999988877 888664433 334458888999999888888887 56643
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
+..-+.-...+.++|.+++|..=|+.++... |..- ...+|..-+..+.. .......+..
T Consensus 106 ----~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~--------------~~~eaqskl~~~~e-~~~l~~ql~s 164 (504)
T KOG0624|consen 106 ----MAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNG--------------LVLEAQSKLALIQE-HWVLVQQLKS 164 (504)
T ss_pred ----HHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcc--------------hhHHHHHHHHhHHH-HHHHHHHHHH
Confidence 2222333334455899999999998888754 2111 11111111000000 0122234455
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh-cCChHHH
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN-AHDLKFT 308 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~~~~a 308 (651)
+.-.|+...|+.....+++ +.| |...+..-..+|...|+...|+.-+....+..-..+...|..---.| .|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 6667899999999999888 445 77788888888999999998888777665543222222222211122 2666666
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHH
Q 006303 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (651)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 388 (651)
+...++..+. .||...+-.. | ..+.+..+.++.|.+ ..+.++|.+++...+.
T Consensus 243 L~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~--------------------~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ--------------------AIEEKHWTECLEAGEK 294 (504)
T ss_pred HHHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHH--------------------HHhhhhHHHHHHHHHH
Confidence 6666666654 3443221110 1 111222222222222 2344556666666666
Q ss_pred HHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcc
Q 006303 389 MLSAGVTPNTI---TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 389 m~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
..+........ .+..+-.++...|++.+|++...++.+.. +.|..++.--..+|.-..+++.|+.-|+...+.+
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 55543221111 23344455556666777777777666542 2335566666667766677777777776665443
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=8e-07 Score=76.07 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=44.9
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006303 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (651)
Q Consensus 368 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (651)
.|.-.|...|+...|..-+++.++... -+..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 344455555555555555555555431 134455555555555555555555555555443 223334444444445555
Q ss_pred ChhHHHHHHHHhh
Q 006303 448 QFDRAFRLFRSWT 460 (651)
Q Consensus 448 ~~~~a~~~~~~~~ 460 (651)
.+++|...|+...
T Consensus 118 ~~~eA~q~F~~Al 130 (250)
T COG3063 118 RPEEAMQQFERAL 130 (250)
T ss_pred ChHHHHHHHHHHH
Confidence 5555555555443
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=1.5e-06 Score=86.34 Aligned_cols=206 Identities=12% Similarity=-0.032 Sum_probs=122.1
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
|+. ...+..+...+...|+.+++...+....+.. |...+ ..+........+...|++++|...+++..+. .|
T Consensus 3 p~~-~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P 74 (355)
T cd05804 3 PDF-ALGHAAAALLLLLGGERPAAAAKAAAAAQAL--AARAT---ERERAHVEALSAWIAGDLPKALALLEQLLDD--YP 74 (355)
T ss_pred Ccc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHh--ccCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CC
Confidence 444 5566666677777788888877777776652 21111 1222222344567899999999999998874 45
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCc
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI 222 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~ 222 (651)
+.. ..+..-..........+....+.+.++. .....|........++..+...|++++|.+.++.. |.+..
T Consensus 75 ~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~ 149 (355)
T cd05804 75 RDL---LALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW 149 (355)
T ss_pred CcH---HHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH
Confidence 432 1111000000111113445555555544 11222333344445556777788888887776553 55666
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
.+..+...|...|++++|...+++....... ++. ..|..+...+...|++++|..+|++....
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 7777888888888888888888877764321 222 23446677778888888888888877543
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.96 E-value=8.5e-06 Score=81.16 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=97.5
Q ss_pred ccccchhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHh--------------------cCChhHHHhhhhH
Q 006303 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVS--------------------EGNVSKFASMLSL 113 (651)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------~~~p~~~~~~~~~ 113 (651)
.++++|++.+...|+. ...|..+...-...|++--|.+.|..+-.- |.+...|
T Consensus 461 ~ra~afles~~~~~da-~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f------ 533 (1636)
T KOG3616|consen 461 DRATAFLESLEMGPDA-EAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF------ 533 (1636)
T ss_pred HHHHHHHHhhccCccH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH------
Confidence 3456688888888887 777888777777777776666666433211 1111111
Q ss_pred HHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccch
Q 006303 114 EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193 (651)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 193 (651)
+..-.....-..++++|..+|-+-.. .-.+...|....+|++|+.+-+.. + .|.-...
T Consensus 534 --ykvra~lail~kkfk~ae~ifleqn~----------------te~aigmy~~lhkwde~i~lae~~---~-~p~~ekl 591 (1636)
T KOG3616|consen 534 --YKVRAMLAILEKKFKEAEMIFLEQNA----------------TEEAIGMYQELHKWDEAIALAEAK---G-HPALEKL 591 (1636)
T ss_pred --HHHHHHHHHHHhhhhHHHHHHHhccc----------------HHHHHHHHHHHHhHHHHHHHHHhc---C-ChHHHHH
Confidence 00001111223344444444321110 001111222345666666654432 1 1222222
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
-....+++...|+-+.|-++- .+..--.+.++.|.+.|....|.+....=.+ +..|......+..++.+..-++
T Consensus 592 k~sy~q~l~dt~qd~ka~elk----~sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elyd 665 (1636)
T KOG3616|consen 592 KRSYLQALMDTGQDEKAAELK----ESDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYD 665 (1636)
T ss_pred HHHHHHHHHhcCchhhhhhhc----cccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHH
Confidence 333445555666666555442 2223344567788888888877765432111 2245555666666666666666
Q ss_pred HHHHHHHHHH
Q 006303 274 KSRAIYEDLR 283 (651)
Q Consensus 274 ~a~~~~~~~~ 283 (651)
+|-++|+++.
T Consensus 666 kagdlfeki~ 675 (1636)
T KOG3616|consen 666 KAGDLFEKIH 675 (1636)
T ss_pred hhhhHHHHhh
Confidence 6666666554
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=3.1e-05 Score=78.37 Aligned_cols=274 Identities=12% Similarity=0.059 Sum_probs=158.2
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHH----------HhcCC------
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVL----------EEFRL------ 186 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~----------~~~~~------ 186 (651)
|-.+|.|++|.++-+.--+ +. +-+++-+.+..+...++.+.|++.|++. +....
T Consensus 836 yQs~g~w~eA~eiAE~~DR--iH--------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 836 YQSQGMWSEAFEIAETKDR--IH--------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred HHhcccHHHHHHHHhhccc--ee--------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 5556677776666543222 11 1122222222334468888888888763 21110
Q ss_pred --CccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 006303 187 --PVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID 264 (651)
Q Consensus 187 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (651)
...+...|..-++.+-..|+.+.|+.+|..+ .-|.+++...|-+|+.++|-++-++- .|..+...|.+
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A----~D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR 975 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSA----KDYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLAR 975 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHh----hhhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHH
Confidence 1223445555666677788999999888765 45778888888899999998887653 46677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC--------CcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006303 265 VCGICGDYMKSRAIYEDLRSQN--------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (651)
Q Consensus 265 ~~~~~g~~~~a~~~~~~~~~~g--------~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 336 (651)
.|-..|++.+|...|.+..... -..+...+|..+.....+.-.|-++|++.-. . ...-+..|-+
T Consensus 976 ~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHk 1047 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHK 1047 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHh
Confidence 9999999999999988653210 1123334444333333345555556655421 1 1123345667
Q ss_pred cCCHHHHHHHHHHHHH------hhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHH----------CCC------
Q 006303 337 AGNTVLAQEIYGEVKH------LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS----------AGV------ 394 (651)
Q Consensus 337 ~g~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----------~~~------ 394 (651)
.|.+.+|.++--.-.+ +.++-....|+...+.-...++...+++.|..++-...+ .|+
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~ 1127 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEF 1127 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 7777666654321111 000100123555666666666677777766665543321 111
Q ss_pred ----------CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 395 ----------TPNTI----TWSSLINACANAGLVEQAMHLFEEM 424 (651)
Q Consensus 395 ----------~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~ 424 (651)
.|+.. ....+...|.++|.+..|.+-|.+.
T Consensus 1128 aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1128 AELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 22332 3456667888899988887777654
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=9.8e-06 Score=83.70 Aligned_cols=174 Identities=10% Similarity=0.001 Sum_probs=99.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+.++++.++.- ...|..|+.-|....+...|...|+.+.+. +|+. ..+-..+...|.+...++.|..+.-.
T Consensus 481 li~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datd------aeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 481 LIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATD------AEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cchh------hhhHHHHHHHhhccccHHHHHHHHHH
Confidence 56666666666 666777777777666667777777766665 5542 22233456667777777777766333
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
.-+. .|-.. ...+ .......+...++...|+..|+..+. ..|.+...|..++.+|.+.|.+..|.+.|.++
T Consensus 552 ~~qk--a~a~~---~k~n-W~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 552 AAQK--APAFA---CKEN-WVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred Hhhh--chHHH---HHhh-hhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 2221 11000 0000 11111233445666777777776655 34777777777777777777777777777554
Q ss_pred ---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 006303 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 249 (651)
|.+.....-...+-+..|++.+|+..+..+..
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22223333344555666777777777766554
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.9e-06 Score=78.74 Aligned_cols=284 Identities=11% Similarity=-0.010 Sum_probs=156.2
Q ss_pred hccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHH
Q 006303 82 AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNE 161 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (651)
.-.++-..|.+++-.+.....-|. +.+.+..++..+...|+.++|+..|++... +.|.....-..|..++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~------NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~- 277 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRC------NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLG- 277 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCc------cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHH-
Confidence 335666667776666655555555 344455667778888888888888888776 55655444344444333
Q ss_pred HHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCH
Q 006303 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (651)
Q Consensus 162 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 237 (651)
+.|++++...+...+.... ......|..-+...-...++..|+.+.++. +++...+..-...+...++.
T Consensus 278 -----~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 278 -----QEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH 350 (564)
T ss_pred -----hccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch
Confidence 3677777777666665422 111222333333344455666666554442 33445555555666677777
Q ss_pred HHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH-Hhhc---CChHHHHHHH
Q 006303 238 VSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNA---HDLKFTLEVY 312 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~---~~~~~a~~~~ 312 (651)
++|.=.|..... +.| +...|.-|+..|...|++.+|.-+-+...+. ++.+..+...+- .++. .--++|.+++
T Consensus 351 ~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 351 TQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred HHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 777777776655 344 5667777777777777777766555443322 011222222110 1111 1234555555
Q ss_pred HHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 006303 313 KNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (651)
Q Consensus 313 ~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 391 (651)
+.-... .|+ ....+.+...+...|..++++.+++.... ..||....+.|...+...+.+++|+..|...++
T Consensus 428 ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 428 EKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI------IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred Hhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh------hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 554432 233 23444455555555666666666655554 345555556666666666666666665555554
Q ss_pred C
Q 006303 392 A 392 (651)
Q Consensus 392 ~ 392 (651)
.
T Consensus 500 ~ 500 (564)
T KOG1174|consen 500 Q 500 (564)
T ss_pred c
Confidence 4
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=1.5e-06 Score=82.80 Aligned_cols=146 Identities=13% Similarity=0.005 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHCC-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 306 KFTLEVYKNMQKLG-VMA--DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 306 ~~a~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
+.++.-+.++.... ..| ....|..+...+...|+.++|...|++..+. .+.+...|+.+...+...|++++|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-----RPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44445555554321 112 2345667777788888888888888888763 234567788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 383 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
...|++..+.... +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...|.+.
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8888888775422 46677777778888888888888888887763 33221122222233456777777777553
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=4.6e-05 Score=76.94 Aligned_cols=374 Identities=11% Similarity=0.017 Sum_probs=247.8
Q ss_pred cchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccc
Q 006303 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (651)
Q Consensus 69 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~ 148 (651)
+.+..|..|.-++...|++..+.+.||+.... .+.. .+.+......+...|.-..|+.+++.-....-.|+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-----~~~~---~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-----SFGE---HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-----hhhh---HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 35778888889999999999999999987544 2222 444456677788999999999999987753322433
Q ss_pred cccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC-CCcc--ccchHHHHHHHHhc----CCChH-------HHHHHh
Q 006303 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVK--ELDEEFRIVQLCVN----KPDVN-------LAIRYA 214 (651)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~----~~~~~-------~A~~~~ 214 (651)
. ..+-+..+. ...+.+.+++++.+..+++... .... ....+..++-+|.. ..... ++++.+
T Consensus 393 ~---s~~Lmaskl--c~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 393 I---SVLLMASKL--CIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred c---hHHHHHHHH--HHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 2 122222222 2334678888888877776521 1111 11223333433332 22222 233333
Q ss_pred hhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--
Q 006303 215 CIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NV-- 287 (651)
Q Consensus 215 ~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~-- 287 (651)
+.. |.|+.+...+.--|+-+++++.|.+...+..+-+..-+...|..|.-.+...+++.+|+.+.+..... |.
T Consensus 468 e~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 332 56667777788889999999999999999998765568889999999999999999999998876543 21
Q ss_pred ----------------cccHHHHHHHHHhh-------------------cC------ChHHHHHHHHHH--------HHC
Q 006303 288 ----------------TLNIYVFNSLMNVN-------------------AH------DLKFTLEVYKNM--------QKL 318 (651)
Q Consensus 288 ----------------~~~~~~~~~ll~~~-------------------~~------~~~~a~~~~~~m--------~~~ 318 (651)
.--..|...++... +| +..++......+ ...
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 00011222222211 00 111111111111 111
Q ss_pred C---------CCCCH--------HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 319 G---------VMADM--------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 319 ~---------~~~~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
| +.|.. ..|......+.+.+..++|...+.+...+ .+.....|......+...|.+++
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHH
Confidence 1 11111 12334455667778888888777777654 45566677777788889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH--LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
|...|......+. -+....+.+..++.+.|+...|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|...
T Consensus 703 A~~af~~Al~ldP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999999887642 256788899999999999888888 999999887 678889999999999999999999999876
Q ss_pred hhc
Q 006303 460 TLS 462 (651)
Q Consensus 460 ~~~ 462 (651)
.+.
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 654
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=3.5e-05 Score=78.02 Aligned_cols=248 Identities=14% Similarity=0.120 Sum_probs=147.0
Q ss_pred HhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc---------CCCcccc
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---------GVAPLEL 149 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~---------~~~~~~~ 149 (651)
+.|...|+.+.|-.-...+... . +..++++-+.+..+.+-|.-.+-.|... .-.|+.
T Consensus 736 SfyvtiG~MD~AfksI~~IkS~----~---------vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e- 801 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIKSD----S---------VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE- 801 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHhhh----H---------HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc-
Confidence 4456667777776655544322 1 1234444555555555554444444321 011111
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC--CCccHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILFCNF 227 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~l 227 (651)
.-.+.+....+.|..++|..+|.+-.. +..+-+.|...|.+++|.++.+.-.+ -..+|...
T Consensus 802 -------~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 802 -------DEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred -------hhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 011222223346889999999887544 44566778888999999888655322 12667777
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHH
Q 006303 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (651)
...+..++|.+.|++.|++... |-..++..|.. +........+.+. .+....|-.----..|+.+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~----hafev~rmL~e------~p~~~e~Yv~~~~----d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGV----HAFEVFRMLKE------YPKQIEQYVRRKR----DESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHHh------ChHHHHHHHHhcc----chHHHHHHHHHHhcccchHH
Confidence 8888888889999988887432 22223332221 2222223333332 22333333222223477888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
|+.+|..... |-.+++..|-.|+.++|-++-++- -|......+.+.|-..|++.+|...|-
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es----------gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES----------GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc----------ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8888877654 556777788888888888876642 366677778888888888888888887
Q ss_pred HHH
Q 006303 388 DML 390 (651)
Q Consensus 388 ~m~ 390 (651)
+..
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 654
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=9.3e-06 Score=72.15 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKI 573 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (651)
..||..++-.||+..-++.|-.++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 45666666666666666666665544
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.2e-05 Score=71.55 Aligned_cols=316 Identities=11% Similarity=0.054 Sum_probs=202.5
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 152 (651)
.+.+.+..+.+..++.+|++++....+. .|. ....++.++-.|-+..++..|-+.++++-. ..|...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~--- 78 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPR------SRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELE--- 78 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--Ccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHH---
Confidence 3566677778889999999999988877 553 244556667778899999999999999987 455332
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHH----HHHhcCCChHHHHHHhhhCCCC--CccHHH
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV----QLCVNKPDVNLAIRYACIVPRA--DILFCN 226 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 226 (651)
-+..+ .+..+-+.+.+.+|+.+...|... .......+ ...-..+++..+..+.++.|.. ..+.+.
T Consensus 79 -qYrlY--~AQSLY~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in 149 (459)
T KOG4340|consen 79 -QYRLY--QAQSLYKACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQIN 149 (459)
T ss_pred -HHHHH--HHHHHHHhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhcc
Confidence 22222 112333468899999998887542 12222222 1233578888888889988853 355556
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc---C
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA---H 303 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~---~ 303 (651)
..-...+.|+++.|.+-|+...+.+.-....+||.-+..| +.|+++.|++...++.++|++.... ++.-+..-. +
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvr 227 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVR 227 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchh
Confidence 6666778999999999999998865545677888777655 5689999999999999988752211 111000000 0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
....... |..++ -...+|.-...+.+.|+++.|.+.+-.|.- +.....|+.|...+.-.= -.+++.+..
T Consensus 228 svgNt~~----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPP---RaE~elDPvTLHN~Al~n-~~~~p~~g~ 296 (459)
T KOG4340|consen 228 SVGNTLV----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPP---RAEEELDPVTLHNQALMN-MDARPTEGF 296 (459)
T ss_pred cccchHH----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCC---cccccCCchhhhHHHHhc-ccCCccccH
Confidence 0000000 00100 123445555566778888888888877753 222345666665543222 234455555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 424 (651)
+-+..++.... -...||..++-.||+..-++.|-.++.+-
T Consensus 297 ~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 297 EKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 55666665543 35678888999999988888888887654
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.80 E-value=0.00027 Score=71.63 Aligned_cols=411 Identities=10% Similarity=0.050 Sum_probs=242.6
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
..+..+|..|.-++.+.|+++.+.+.|++.... .......|+.+.-.|...|.-..|..+++........|+..+-..+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345577888888889999999999999987753 2245667888888899999988999998876655434443333333
Q ss_pred HH-hhcC---ChHHHHHHHHHHHH--CC--CCCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhhhcCC
Q 006303 298 MN-VNAH---DLKFTLEVYKNMQK--LG--VMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGV 358 (651)
Q Consensus 298 l~-~~~~---~~~~a~~~~~~m~~--~~--~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 358 (651)
.. .|.+ ..++++.+-.+... .+ -...+..|..+.-+|... ....++.+.+++..+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d---- 474 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD---- 474 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC----
Confidence 33 3433 44454444444443 11 122345555555555432 12345667777776531
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
+.|....-.+.--|+..++++.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- ..|......
T Consensus 475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 223333334445577888999999999999988667788999999999999999999999988776531 000000000
Q ss_pred HHHHHHhcCChhHHHHHHHHhhh-----------------ccccccc----cc--ccCCchhhhhhhhhhccccccCCCC
Q 006303 439 LLQACVEACQFDRAFRLFRSWTL-----------------SKTQVAL----GE--DYDGNTDRISNMEHKDKQSITNTPN 495 (651)
Q Consensus 439 ll~~~~~~g~~~~a~~~~~~~~~-----------------~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (651)
=+..-...++.++++.....+.. .+.+... .. +.......+.........+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~------ 626 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS------ 626 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh------
Confidence 01111123344444333322221 0000000 00 0000000000000000000
Q ss_pred ccCCCcccccccccccCCCHH-HHHHH-------HHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChH
Q 006303 496 FVPNSHYSSFDKRFSFKPTTT-TYNIL-------MKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565 (651)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~-~~~~l-------l~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 565 (651)
......+..+-+.|... +|..+ ...+. ++.+++..-+.+.... ..-....|......+...|...
T Consensus 627 ----~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 627 ----AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred ----cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhH
Confidence 00000122222233221 22211 12222 3456666555555442 1224556666677778889999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 566 GALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFS--LFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 566 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
+|.+.|...... .|+ .....++...+.+.|+..-|.. ++.++.+.+ +-+...|..+...+...|+.+.|.+++.
T Consensus 702 EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 702 EAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999988874 555 5577889999999998887777 999998765 5678899999999999999999999887
Q ss_pred HHHHHHh
Q 006303 643 VYQDMWK 649 (651)
Q Consensus 643 ~~~~m~~ 649 (651)
.--++..
T Consensus 779 aa~qLe~ 785 (799)
T KOG4162|consen 779 AALQLEE 785 (799)
T ss_pred HHHhhcc
Confidence 6655543
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=3.9e-05 Score=76.21 Aligned_cols=198 Identities=14% Similarity=0.036 Sum_probs=116.9
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCC-CCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH-HH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-LM 298 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-ll 298 (651)
..+..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|.+.+++..+..+. +...+.. +.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 3444455555555666666555555444222 11211 1222233345667777777777776665322 2222221 11
Q ss_pred Hh----hcCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHH
Q 006303 299 NV----NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (651)
Q Consensus 299 ~~----~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (651)
.. ..+....+.+.+.. .....|+ ......+...+...|++++|.+.+++..+. .+.+...+..+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~~~~~~~la~i~ 158 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDDAWAVHAVAHVL 158 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCcHHHHHHHHHH
Confidence 11 12344444444443 1112233 344455667788889999999999988874 234456778888888
Q ss_pred HcccCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 374 ADAKWWQMALKVKEDMLSAGV-TPNT--ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 374 ~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
...|++++|...+++...... .++. ..|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 899999999999988876532 1222 34556778888899999999999887543
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.78 E-value=0.0001 Score=73.81 Aligned_cols=217 Identities=12% Similarity=0.143 Sum_probs=141.1
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+...|+++.|+..|-+... ++++.........|.+|+.+++.+..... ..-++..+...|.
T Consensus 716 l~~~~q~daainhfiea~~----------------~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhya 776 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEANC----------------LIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYA 776 (1636)
T ss_pred HHHHHhHHHHHHHHHHhhh----------------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhc
Confidence 4456666666655543332 34444455557899999999998876442 2345677888999
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
..|+++.|+++|... ..++..+.+|.+.|++++|.++-.+... .+.....|-+-..-+-+.|++.+|.++|-..
T Consensus 777 n~~dfe~ae~lf~e~----~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEA----DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred cchhHHHHHHHHHhc----chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 999999999998764 4567788999999999999998877643 4445566766667778889999998887543
Q ss_pred HhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc
Q 006303 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (651)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 362 (651)
- .|+.. .-|.-..|..++.+++..+-... .-..|...+..-+-..|++..|...|-+...
T Consensus 851 ~----~p~~a---iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------- 910 (1636)
T KOG3616|consen 851 G----EPDKA---IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------- 910 (1636)
T ss_pred c----CchHH---HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------
Confidence 2 12211 01111123444444444433211 1134556667777788888888887755432
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
|..-+++|-..+.|++|.++-+
T Consensus 911 ---~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 911 ---FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred ---HHHHHHHhhhhhhHHHHHHHHh
Confidence 4556667777777777766543
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=4.1e-06 Score=75.85 Aligned_cols=299 Identities=12% Similarity=0.064 Sum_probs=177.9
Q ss_pred cccccchhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHH
Q 006303 53 HSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCV 132 (651)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a 132 (651)
.+..+.+..++..+|++ -.++-.-+..|..-|+-.-|+.-+++.++. .|+-+...+-. ...+.++|++++|
T Consensus 55 sDALt~yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR------g~vllK~Gele~A 125 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR------GVVLLKQGELEQA 125 (504)
T ss_pred HHHHHHHHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh------chhhhhcccHHHH
Confidence 34445677888888888 666666778888899999999999999998 78755444333 3448899999999
Q ss_pred HHHHHHHHHcCCCccccccchhhHHH---------HHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhc
Q 006303 133 VGVLKKLNELGVAPLELFDGSGFKLL---------KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (651)
Q Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (651)
+.=|+..+.. .|+.-......+-+ ..-...+.-.|+...|++.+..+++ +.|-+...+..-.++|..
T Consensus 126 ~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 126 EADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHh
Confidence 9999999985 34322222111111 1111223335788888888888877 446666666677778888
Q ss_pred CCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHH
Q 006303 204 KPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (651)
Q Consensus 204 ~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 279 (651)
.|++..|+.-.... .++.....-+-..+...|+.+.++....+.++ +.||...+-.. | ..+.+..+.+
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~---Y---KklkKv~K~l 273 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF---Y---KKLKKVVKSL 273 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH---H---HHHHHHHHHH
Confidence 88888876544432 34456677777777778888888888877777 44554322211 1 1112222222
Q ss_pred HHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 006303 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM---ASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (651)
Q Consensus 280 ~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (651)
+.|.+. .-.+++.++++..+...+....... ..+..+-.++..-|++.+|++...++...
T Consensus 274 es~e~~--------------ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--- 336 (504)
T KOG0624|consen 274 ESAEQA--------------IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--- 336 (504)
T ss_pred HHHHHH--------------HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc---
Confidence 222211 0012334444444444433211111 12223334444556666666666666652
Q ss_pred CCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 357 GVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 357 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
.|| +.++.--..+|.-...+++|+.-|+...+.
T Consensus 337 ---d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 337 ---DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 233 555666666666666666666666666654
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=0.00025 Score=73.80 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=66.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
|+..|..+++...+.|.|++-.+.+....+.. -+| ..=+.|+-+|++.++..+.++++ ..|+.....
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~----~E~--~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKV----REP--YIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQ 1198 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh----cCc--cchHHHHHHHHHhchHHHHHHHh-------cCCCchhHH
Confidence 55666677777777777777666666555421 122 23345666777777666555443 135666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 457 (651)
.+.+-|...|.++.|.-+|... .-|..|...+...|++..|.+.-+
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666667666666655543 235555555666666666655544
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=4.1e-05 Score=86.47 Aligned_cols=312 Identities=9% Similarity=-0.066 Sum_probs=161.9
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCcc--ccchHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK--ELDEEF 195 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ 195 (651)
.....+...|++..+..+++.+.......+. .+. +.. ...+...|++++|...++.....-.... ......
T Consensus 379 ~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~----~l~--~~~-a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~ 451 (903)
T PRK04841 379 QHGWSLFNQGELSLLEECLNALPWEVLLENP----RLV--LLQ-AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQ 451 (903)
T ss_pred HhHHHHHhcCChHHHHHHHHhCCHHHHhcCc----chH--HHH-HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHH
Confidence 3444566778888877777665321111111 111 111 1122346889999888877654211000 000000
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc----HHhHHHHHHHHHhcCC
Q 006303 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGD 271 (651)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 271 (651)
. .....+...+...|++++|...++...+.....+ ..+.+.+...+...|+
T Consensus 452 ~-------------------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 452 A-------------------------EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred H-------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 0 1111223344556777777777766654211111 1234555556666777
Q ss_pred HHHHHHHHHHHHhCCCc---ccH--HHHHHH--HHhhcCChHHHHHHHHHHHH----CCCC--C-CHHhHHHHHHHHHhc
Q 006303 272 YMKSRAIYEDLRSQNVT---LNI--YVFNSL--MNVNAHDLKFTLEVYKNMQK----LGVM--A-DMASYNILLKACCLA 337 (651)
Q Consensus 272 ~~~a~~~~~~~~~~g~~---~~~--~~~~~l--l~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~ 337 (651)
+++|...+++.....-. +.. ..+..+ +....|+++.|...+++... .+.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 77777777666532110 111 111111 11233677777776666543 2211 1 223344556667778
Q ss_pred CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHhc
Q 006303 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITW-----SSLINACANA 411 (651)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~-----~~ll~~~~~~ 411 (651)
|++++|...+++................+..+...+...|++++|.+.++......... ....+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 99999999998876643322111123345556677888999999998888875421110 11111 1122344557
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 412 GLVEQAMHLFEEMLQAGCEPNS---QCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 412 g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
|+.+.|...+............ ..+..+..++...|++++|...+++...
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888887665432211111 1134455667778888888888877653
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=3.6e-06 Score=81.84 Aligned_cols=231 Identities=13% Similarity=0.117 Sum_probs=135.7
Q ss_pred HhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l 158 (651)
..+.+.|++.+|.-.||..... +|.+. ++...++......++-..|+..|++-++ +.|+. ..++
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq--dP~ha------eAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~N------leaL 356 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ--DPQHA------EAWQKLGITQAENENEQNAISALRRCLE--LDPTN------LEAL 356 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh--ChHHH------HHHHHhhhHhhhccchHHHHHHHHHHHh--cCCcc------HHHH
Confidence 4445677788888888888777 77743 3444455567777777778888777776 55543 2344
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHH
Q 006303 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (651)
Q Consensus 159 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 238 (651)
...+..|...|.-.+|+..++..+... |+.. + +..+ ...+.+. .+ ..+.....+.
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~--~--l~~a-~~~~~~~-------------~~-----~s~~~~~~l~ 411 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNK--PKYV--H--LVSA-GENEDFE-------------NT-----KSFLDSSHLA 411 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhC--ccch--h--cccc-Ccccccc-------------CC-----cCCCCHHHHH
Confidence 555556666777777777777665433 1100 0 0000 0000000 00 1112222333
Q ss_pred HHHHHHHHHHh-cCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006303 239 SALRAYDASKK-HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (651)
Q Consensus 239 ~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (651)
+..++|-++.. .+..+|..+...|.-.|--.|++++|++.|+..+.. .
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~----------------------------- 460 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--K----------------------------- 460 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--C-----------------------------
Confidence 44444444433 232356667777777777777777777777776654 1
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 318 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
+-|...||.|...++...+.++|+..|.+..+ ++|+ +.....|.-+|...|.+++|...|-..+
T Consensus 461 ---Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq------LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 461 ---PNDYLLWNRLGATLANGNRSEEAISAYNRALQ------LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ---CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh------cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 22566777777777777777777777777776 4455 3355556667777777777777665554
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=0.00017 Score=81.62 Aligned_cols=374 Identities=11% Similarity=0.063 Sum_probs=219.6
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCCccH---HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 197 IVQLCVNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
....+...|++.+|.......+...... ......+...|+++.+...++.+.......+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3445566677777776666655443222 1223445566888877777766532111122223334445556778999
Q ss_pred HHHHHHHHHHhCCC------cccHH----HHHHHHHhhcCChHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCC
Q 006303 274 KSRAIYEDLRSQNV------TLNIY----VFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD----MASYNILLKACCLAGN 339 (651)
Q Consensus 274 ~a~~~~~~~~~~g~------~~~~~----~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~ 339 (651)
++...+......-- .+... .....+....|+++.|...+++....-...+ ....+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 99888887654210 11111 1111222345789999999988765311112 1244556667778999
Q ss_pred HHHHHHHHHHHHHhhhc-CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhc
Q 006303 340 TVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVT--P-NTITWSSLINACANA 411 (651)
Q Consensus 340 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~ 411 (651)
+++|...+++....... |........+..+...+...|++++|...+++.... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999999888764322 111111234556677888899999999988876642 211 1 223344556667778
Q ss_pred CCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhcc
Q 006303 412 GLVEQAMHLFEEMLQAG--CEPN--SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (651)
Q Consensus 412 g~~~~a~~~~~~~~~~~--~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (651)
|++++|...+++..... ..+. ...+..+...+...|+++.|.+.++.........
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~--------------------- 645 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG--------------------- 645 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---------------------
Confidence 99999999988876531 1122 2334445567778999999999888765421100
Q ss_pred ccccCCCCccCCCcccccccccccCCCH-HHH---HHHHHHHhhcHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhc
Q 006303 488 QSITNTPNFVPNSHYSSFDKRFSFKPTT-TTY---NILMKACCTDYYRVKALMNEMRTVGLSPNH---ISWTILIDACGG 560 (651)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~ 560 (651)
+..... ... ........++.+.|...+............ ..+..+..++..
T Consensus 646 ----------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 646 ----------------------RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred ----------------------cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 000000 000 011111234677777776665432111111 113456677888
Q ss_pred CCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006303 561 SGNVEGALQILKIMRED----GMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (651)
Q Consensus 561 ~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (651)
.|+.++|..++++.... |..++ ..++..+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988652 32222 2456667778889999999999999998653
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00031 Score=68.20 Aligned_cols=210 Identities=9% Similarity=0.005 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006303 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (651)
Q Consensus 379 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 455 (651)
-+++..+++.....-..-+..+|..+...--..- ..+....+++++...-...-..+|..+|+.-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4566677776665433334455555444322222 2666777777776643233334677888888888888999999
Q ss_pred HHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh-hcHHHHHH
Q 006303 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKA 534 (651)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~a~~ 534 (651)
|.+..+.+. ..-.+.+++++|.-+| ++.+-|.+
T Consensus 389 F~kaR~~~r----------------------------------------------~~hhVfVa~A~mEy~cskD~~~Afr 422 (656)
T KOG1914|consen 389 FKKAREDKR----------------------------------------------TRHHVFVAAALMEYYCSKDKETAFR 422 (656)
T ss_pred HHHHhhccC----------------------------------------------CcchhhHHHHHHHHHhcCChhHHHH
Confidence 998876643 1337888999998877 58999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
+|+-=.+. ..-++.-....++-+...++-..+..+|++....++.|| ...|..++.-=..-|+...+.++-+++...
T Consensus 423 IFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 423 IFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99876553 223444556778888889999999999999998866655 478999999989999999999998888632
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHH
Q 006303 613 ---QIQPNLVTYITLLRARSRYGSLH 635 (651)
Q Consensus 613 ---g~~p~~~~~~~l~~~~~~~g~~~ 635 (651)
...+...+-..+++-|.-.+...
T Consensus 502 f~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 502 FPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred cchhhcCCCChHHHHHHHHhhccccc
Confidence 12233334445555555555443
No 101
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.73 E-value=0.00052 Score=70.81 Aligned_cols=490 Identities=15% Similarity=0.102 Sum_probs=265.4
Q ss_pred hhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHH
Q 006303 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (651)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~ 159 (651)
.....+++++|.+..+++++. .|+.....+. -+-.+.+.|+.++|..+++..... .++ +..++.++-
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~~a~vL------kaLsl~r~gk~~ea~~~Le~~~~~--~~~---D~~tLq~l~ 84 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNALYAKVL------KALSLFRLGKGDEALKLLEALYGL--KGT---DDLTLQFLQ 84 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcHHHHHH------HHHHHHHhcCchhHHHHHhhhccC--CCC---chHHHHHHH
Confidence 345678999999999999999 6664322222 233478999999999998877754 333 334555554
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChH----HHHHHhhhCCCCCccHHHHHHHHhhcC
Q 006303 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFGKKR 235 (651)
Q Consensus 160 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~~~~~~g 235 (651)
. .|.+.++.++|..+|++..+.. |. .+....+..+|.+.+++. .|.+++..+|.++..+-++++.+.+..
T Consensus 85 ~---~y~d~~~~d~~~~~Ye~~~~~~--P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 85 N---VYRDLGKLDEAVHLYERANQKY--PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred H---HHHHHhhhhHHHHHHHHHHhhC--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence 4 5566899999999999998855 55 666777778888877776 567889999999988777777765541
Q ss_pred ----------CHHHHHHHHHHHHhcCCC-CcHHhHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCcccHHHHHHHHHh--h
Q 006303 236 ----------DLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYE-DLRSQNVTLNIYVFNSLMNV--N 301 (651)
Q Consensus 236 ----------~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~g~~~~~~~~~~ll~~--~ 301 (651)
-..-|.+.++.+.+.+.. -+..-...-...+...|++++|.+++. ...+.-..-+...-+--+.. .
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 123566677777765411 122222233344567789999999983 33333222233332333332 3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----------------cCCHHHHHHHHHHHHHhhhcCCccccHHH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----------------AGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 365 (651)
.+++.+..++-.++...|. |. |...++.+.+ .+..+...+..+.... . .....
T Consensus 239 l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~---~----~~Rgp 307 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIG---S----KSRGP 307 (932)
T ss_pred hcChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhc---c----cccCc
Confidence 4678888888888877662 32 3332222211 1122222222222211 0 01111
Q ss_pred HHHHH---HHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------H
Q 006303 366 YSTIV---KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------C 435 (651)
Q Consensus 366 ~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~ 435 (651)
|-+-+ .-+-.-|+.+++.-.|-+-. |-. ..|..=+..|...=..++-..++....... ++.. -
T Consensus 308 ~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~ 380 (932)
T KOG2053|consen 308 YLARLELDKRYKLIGDSEEMLSYYFKKF--GDK---PCCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQ 380 (932)
T ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHh--CCC---cHhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHH
Confidence 22222 22234566666554443221 211 122222222222223333334443333221 1111 0
Q ss_pred HHHHHHHHHhcCC-----hhHHHHHHHHhhhccccc-ccccccCCchhhhhhhhhhccccccCCCCccCCCccccccccc
Q 006303 436 CNILLQACVEACQ-----FDRAFRLFRSWTLSKTQV-ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509 (651)
Q Consensus 436 ~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (651)
+...+..-.-.|. .+.-..++.+....--.. .. ..
T Consensus 381 h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~---------------------------------------~K 421 (932)
T KOG2053|consen 381 HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSL---------------------------------------SK 421 (932)
T ss_pred HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccc---------------------------------------cc
Confidence 1111111111221 122222222221110000 00 00
Q ss_pred ccCCCH---------HHHHHHHHHHhh-----cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 006303 510 SFKPTT---------TTYNILMKACCT-----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (651)
Q Consensus 510 ~~~~~~---------~~~~~ll~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (651)
++-|+. -+-+.+++.|-+ ..-+|.-+++.-.... ..|..+--.+|+.|+-.|-...|.++++.+-
T Consensus 422 ~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLd 500 (932)
T KOG2053|consen 422 DLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLD 500 (932)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcc
Confidence 112222 234455566654 2345666666655532 2255566778899999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006303 576 EDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (651)
Q Consensus 576 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~ 648 (651)
-++++-|..-|- +..-+...|++..+...++.....=-.--..+-..+..|| +.|.+....+++..=++|.
T Consensus 501 IK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~ 571 (932)
T KOG2053|consen 501 IKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLM 571 (932)
T ss_pred hHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHH
Confidence 766776655443 3345667889999999988776431112223444444454 6788888887766655554
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=2.4e-08 Score=58.82 Aligned_cols=32 Identities=47% Similarity=0.817 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (651)
Q Consensus 578 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (651)
|+.||..|||.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=9.8e-06 Score=78.94 Aligned_cols=234 Identities=14% Similarity=0.099 Sum_probs=166.8
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (651)
-+.+.|++.+|.-.|+..+..... +...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 356788899999999998887543 77889999999899999999999999998875 4566777888888999999999
Q ss_pred HHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHH
Q 006303 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531 (651)
Q Consensus 452 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 531 (651)
|++.++.+.....+......... ... ...-+-.++.. ....
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~---------~~~-------------------~~~~~s~~~~~-----------~l~~ 412 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGE---------NED-------------------FENTKSFLDSS-----------HLAH 412 (579)
T ss_pred HHHHHHHHHHhCccchhccccCc---------ccc-------------------ccCCcCCCCHH-----------HHHH
Confidence 99999988765432111000000 000 00000011211 2234
Q ss_pred HHHHHHHH-HHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 532 VKALMNEM-RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (651)
Q Consensus 532 a~~~~~~~-~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (651)
..++|-++ ...+..+|+.+...|...|.-.|.+++|...|+.++.. +| |..+||.|...++...+.++|++.|++.
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 44455444 34455578888889999999999999999999998874 45 5678999999999999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 006303 610 KHYQIQPNL-VTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (651)
Q Consensus 610 ~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~~ 650 (651)
++ ++|+- ....-|..+|...|.+++|.+.+----.|.++
T Consensus 491 Lq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 491 LQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred Hh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 85 56764 45666777888999998887765555555543
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=5.6e-07 Score=84.35 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=128.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITWS 402 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~ 402 (651)
......+.+++...|+++.+. .++.. + -.|.......+...+...++-+.++.-++........+ +.....
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~----~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~ 106 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKK----S-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQL 106 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-T----T-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhcc----C-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHH
Confidence 334445667777777765433 22221 1 24555555444444433344444544444433332221 222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
.....+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-------------------- 160 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-------------------- 160 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------
Confidence 2233455567777777776542 35566666777777888888888777777642
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh----h--cHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC----T--DYYRVKALMNEMRTVGLSPNHISWTILID 556 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 556 (651)
..|.. ..-+..++. + .+..|..+|+++.+. ..+++.+.+.+..
T Consensus 161 -----------------------------~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~ 209 (290)
T PF04733_consen 161 -----------------------------DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAV 209 (290)
T ss_dssp -----------------------------SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHH
T ss_pred -----------------------------CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHH
Confidence 22322 222333322 2 467788888887654 5578888899999
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 006303 557 ACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL-KQAFSLFEEMKH 611 (651)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 611 (651)
++...|++++|.+++.+..+.+ +-|+.+...++.+....|+. +.+.+++.++..
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999999999999887654 23667777788888888887 667788888875
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=3.8e-08 Score=57.96 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=31.7
Q ss_pred cCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 006303 542 VGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (651)
Q Consensus 542 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (651)
.|+.||..||++||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=4.9e-06 Score=78.08 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHH----cccC
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA----DAKW 378 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 378 (651)
|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. -.+.
T Consensus 116 ~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~------~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 116 GDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI------DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC------SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCcH-HHHHHHHHHHHHHhCchh
Confidence 5566665555432 25556666677777778888888777777752 2232 2333333332 2345
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 006303 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFRLFR 457 (651)
Q Consensus 379 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~ 457 (651)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-++.+...++.++...|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 77777788776544 45667777777777777788888887777766554 33455666666666666666 44555666
Q ss_pred Hhhh
Q 006303 458 SWTL 461 (651)
Q Consensus 458 ~~~~ 461 (651)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5543
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00071 Score=70.55 Aligned_cols=200 Identities=14% Similarity=0.118 Sum_probs=92.3
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
.+|..+..+-.+.|.+.+|++-|-+. -|+..|..+++...+.|.|++-...+.-.++..-.|...+-..+..+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 45555555555556665555554332 234455566666666666666665555444444344333322222222
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
.++..+.++++ .-||......+.+-|...|.++.|.-+|..+ .-|..|...+...|+++.
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHH
Confidence 22222221111 1244444555555555555555554444322 234555555555666655
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
|.+.-++.- +..||-.+-.+|...+.+..| +|--.++-....-..-++.-|-..|-+++.+.+++.
T Consensus 1239 AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1239 AVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 555444322 445555555555544443322 111111222333344455555555555555555443
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.58 E-value=0.0015 Score=68.40 Aligned_cols=382 Identities=10% Similarity=-0.001 Sum_probs=200.5
Q ss_pred CCCCCCCcccccchhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhh
Q 006303 46 LSSIPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR 125 (651)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 125 (651)
.....+.+.....+..+++-+|.. ...+..++.+|...|++.-|+.+|+++... +|+++... .......+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD-~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~------fk~A~~ecd 642 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKD-YNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGR------FKEAVMECD 642 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchh-HHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHH------HHHHHHHHH
Confidence 333444455556688888888888 999999999999999999999999998877 88765332 233444788
Q ss_pred hcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC------CCccccchHHHHHH
Q 006303 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR------LPVKELDEEFRIVQ 199 (651)
Q Consensus 126 ~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~ 199 (651)
.|++.+|+..+..+...--.- ......+...+++....+...|-...|...+++..+.- ....+...|..+..
T Consensus 643 ~GkYkeald~l~~ii~~~s~e-~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLE-RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD 721 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Confidence 999999999999887631000 00111233444444444444566666666666543321 00222233333333
Q ss_pred HHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhh----cCCH---H---HHHHHHHHHHhcCCCCcHHhHHHHHHHHHh-
Q 006303 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGK----KRDL---V---SALRAYDASKKHLSSPNMYICRTIIDVCGI- 268 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~----~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 268 (651)
+| ..|.+..++ .+-..++..+.. .+.. + -+.+.+-.-.. ...+...|..|+..|.+
T Consensus 722 ac----------~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 722 AC----------YIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred HH----------HHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHH
Confidence 33 233333322 111122222222 1111 1 11111111111 11123344444443333
Q ss_pred ---c----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 006303 269 ---C----GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (651)
Q Consensus 269 ---~----g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 339 (651)
. .+...|+..+....+... -+..+||.|=-. . |.+.-+..-|-+-.... +.+..+|..+.-.+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEeccc
Confidence 1 122356666665544311 144555554333 3 34444444444443332 3456778888878888888
Q ss_pred HHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHH--HH--CCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM--LS--AGVTPNTITWSSLINACANAGLVE 415 (651)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m--~~--~~~~~~~~~~~~ll~~~~~~g~~~ 415 (651)
++.|...|.....+ .+.|...|-.........|+.-+...+|..- .. .|-.++..-|..........|+.+
T Consensus 866 ~E~A~~af~~~qSL-----dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSL-----DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred HHHhhHHHHhhhhc-----CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 88888888888764 3455666777777777778877777777662 21 222333333333333344555554
Q ss_pred HHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 416 QAMHLFEEMLQA---------GCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 416 ~a~~~~~~~~~~---------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
+-+...+++-.. +.+.+...|........+.+.+..|.++..+
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 433333332211 2233334555554444455555555554443
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00082 Score=65.44 Aligned_cols=234 Identities=16% Similarity=0.122 Sum_probs=143.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH-----
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW----- 401 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----- 401 (651)
...+.++..+..++..+++.+.....+ .-++.-++....+|...|.+.++........+.|-. ...-|
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el------~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak 299 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALEL------ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAK 299 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhH------hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHH
Confidence 445667777778888888888888763 335555677777888888888877777776665432 12222
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhh
Q 006303 402 --SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479 (651)
Q Consensus 402 --~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (651)
..+..+|.+.++++.++..|.+.......|+.. .+....+++....+...-
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~------------------ 352 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY------------------ 352 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh------------------
Confidence 223345556677777777777765543333221 122223333333322211
Q ss_pred hhhhhhccccccCCCCccCCCcccccccccccCCCHHH--HHHHHHHHh-hcHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006303 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT--YNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILID 556 (651)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ll~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 556 (651)
+.|.... -..-...+. +++..|...|.++++.. +-|...|..-.-
T Consensus 353 -------------------------------~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 353 -------------------------------INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred -------------------------------hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 1222210 000011122 47889999999998875 347788999999
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 557 ACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (651)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 630 (651)
+|.++|.+..|++=.+..++. .|+ ...|..=..++....++++|.+.|++..+. .|+..-+.--+.-|..
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 999999999998888777774 333 334444455555667888999999888865 3666555555554444
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=1.2e-05 Score=74.47 Aligned_cols=190 Identities=8% Similarity=-0.032 Sum_probs=131.2
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|+.++.. .|+... ...++..++..+...|++++|+..++++.+. .|+...
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~ 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPY---AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPD 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchh---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 677788888999999999999999999887 554321 1345567788899999999999999999984 454332
Q ss_pred cchhhHHHHHHHHHHh--------hcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCc
Q 006303 151 DGSGFKLLKNECQRLL--------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 222 (651)
....+ +.. ...+. ..|++++|++.++++.... |.+...+..+.......+.. ..
T Consensus 106 ~~~a~--~~~-g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~-------------~~ 167 (235)
T TIGR03302 106 ADYAY--YLR-GLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRL-------------AG 167 (235)
T ss_pred hHHHH--HHH-HHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHH-------------HH
Confidence 11111 111 11222 2378999999999998755 54443333222111100000 01
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
....+...|.+.|++.+|+..++...+.... | ....+..+..++.+.|++++|...++.+..+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1235677899999999999999999875431 2 3568889999999999999999999888765
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=0.00012 Score=78.74 Aligned_cols=224 Identities=14% Similarity=0.105 Sum_probs=154.7
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
+...|-..|......++.+.|.+++++++.. +.+. ...|.++++.-..-|.-+...++|+++.+. .....+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3456777777777777777777777777643 2111 135666666666667777777777777664 2233467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHH
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (651)
..|...|.+.+..++|.++++.|.+. +.-...
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK------------------------------------------------F~q~~~ 1565 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK------------------------------------------------FGQTRK 1565 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH------------------------------------------------hcchhh
Confidence 77777777777777887777777654 133445
Q ss_pred HHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPN---HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIK 591 (651)
Q Consensus 517 ~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (651)
.|...+..+.+ +.+.|..++.++.+. -|. .....-.+..-.+.|+.+.+..+|+.....- +.....|+.+|+
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYID 1642 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHH
Confidence 56666666554 345667777777664 333 3445555666678899999999999888753 336778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 006303 592 VCVRSKRLKQAFSLFEEMKHYQIQPNL--VTYITLLRARSRYGSLHEVQQ 639 (651)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~ 639 (651)
.-.++|+.+.+..+|++.+..++.|-. ..|..++..=-..|+-+.++.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 999999999999999999988877765 567777776667777665544
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00023 Score=69.08 Aligned_cols=375 Identities=10% Similarity=0.027 Sum_probs=216.8
Q ss_pred hcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCCHHHHHH
Q 006303 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALR 242 (651)
Q Consensus 167 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~ 242 (651)
..|+++.|+..|.+.+... |++...++.-..+|...|++++|.+--.. -|..+..|+.+..++.-.|++++|+.
T Consensus 14 s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 3799999999999988744 77888999999999999999998865433 47777899999999999999999999
Q ss_pred HHHHHHhcCCCC-cHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhC---CCcccHHHHHHHHHhhcC---------ChH
Q 006303 243 AYDASKKHLSSP-NMYICRTIIDVCGICGDY---MKSRAIYEDLRSQ---NVTLNIYVFNSLMNVNAH---------DLK 306 (651)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~---g~~~~~~~~~~ll~~~~~---------~~~ 306 (651)
.|.+-++. .| +...++-+.+++...... -.--.++..+... ........|..++..... ...
T Consensus 92 ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 92 AYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 99998884 34 566777777776111000 0000111111100 000111222223222111 011
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CH----HHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAG-NT----VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
...+....+...+. . .+...-......+ .. ..............+ ...-..-...+.++..+..++..
T Consensus 170 r~m~a~~~l~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~---~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 170 RLMKADGQLKGVDE--L--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR---VKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred HHHHHHHHHhcCcc--c--cccccccccCCCCCCcccccCCCCCccchhHHHHH---HHHhhhHHHHHHHHHHHhhhHHH
Confidence 11111111111000 0 0000000000000 00 000000000000000 00112234567788888889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCChhHHHH
Q 006303 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI-------LLQACVEACQFDRAFR 454 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~g~~~~a~~ 454 (651)
+.+.+....+.. -+..-++....+|...|.+...........+.|. -...-|+. +..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999999998764 3555667777788888888888777777766652 12222333 3346667788888888
Q ss_pred HHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHH
Q 006303 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534 (651)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~ 534 (651)
.|.+...... .|+... . .+..+++..
T Consensus 320 ~~~kaLte~R-----------------------------------------------t~~~ls------~-lk~~Ek~~k 345 (539)
T KOG0548|consen 320 YYQKALTEHR-----------------------------------------------TPDLLS------K-LKEAEKALK 345 (539)
T ss_pred HHHHHhhhhc-----------------------------------------------CHHHHH------H-HHHHHHHHH
Confidence 8887554321 222111 0 112334444
Q ss_pred HHHHHHHcCCCCcHH-HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 535 LMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 535 ~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
......- +.|... -.-.-...+.+.|++..|.+.+.+++... +-|...|....-+|.+.|.+..|++=.+..++.
T Consensus 346 ~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 346 EAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3333332 223221 11222667788999999999999999875 447889999999999999999999987777754
No 113
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=6.2e-05 Score=71.70 Aligned_cols=49 Identities=12% Similarity=-0.043 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
++++..++++.+... .|..+|+....++.+.|+++++++.++++++.++
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 456777777776432 3667777777777777778777777777776643
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=4.4e-05 Score=76.60 Aligned_cols=217 Identities=13% Similarity=0.171 Sum_probs=125.3
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
.-..+...+...|-..+|..+|+++. .|..++.+|+..|+..+|..+..+..+. +|++..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456777888888888888887653 4777888899999999999988888773 788888888888877
Q ss_pred hcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHH
Q 006303 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (651)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 524 (651)
..--+++|+++.+.....-. . .++.++..
T Consensus 469 d~s~yEkawElsn~~sarA~-r--------------------------------------------------~~~~~~~~ 497 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISARAQ-R--------------------------------------------------SLALLILS 497 (777)
T ss_pred ChHHHHHHHHHhhhhhHHHH-H--------------------------------------------------hhcccccc
Confidence 77778888888876543200 0 00000000
Q ss_pred HhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 006303 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAF 603 (651)
Q Consensus 525 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 603 (651)
.++++++.+.|+.-.+.. .--..+|-.+..+..++++++.|.+.|...... .|| ...||.+-.+|.+.|+..+|.
T Consensus 498 -~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 498 -NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred -chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHH
Confidence 123444444444443321 113334444445555555555555555555442 332 345555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006303 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (651)
Q Consensus 604 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~ 648 (651)
..+++..+.+ .-+-..|...+-.....|.+++|.++..-+.+|.
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 5555555444 3333444444445555555555555444444443
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=1.8e-05 Score=69.97 Aligned_cols=148 Identities=8% Similarity=0.031 Sum_probs=112.5
Q ss_pred HhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 117 ~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
.-.+..|...|+++.+....+.+.. |.. .+...++.++++..++..+... |++...|..
T Consensus 20 ~~~~~~Y~~~g~~~~v~~~~~~~~~----~~~---------------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~ 78 (198)
T PRK10370 20 FLCVGSYLLSPKWQAVRAEYQRLAD----PLH---------------QFASQQTPEAQLQALQDKIRAN--PQNSEQWAL 78 (198)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHhC----ccc---------------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 3445678999999987666543322 110 0111477788888888888755 888999999
Q ss_pred HHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHH-hhcCC--HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc
Q 006303 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREF-GKKRD--LVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (651)
++..|...|++++|...+++. |.+..++..+..++ ...|+ .++|.+++++..+.+. -+..++..+...+.+.
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHc
Confidence 999999999999999887764 67778888888864 66677 5899999999988543 2667888888888899
Q ss_pred CCHHHHHHHHHHHHhCC
Q 006303 270 GDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 270 g~~~~a~~~~~~~~~~g 286 (651)
|++++|+..|+.+.+..
T Consensus 158 g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 158 ADYAQAIELWQKVLDLN 174 (198)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999987764
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.42 E-value=0.00027 Score=75.29 Aligned_cols=237 Identities=11% Similarity=0.073 Sum_probs=142.1
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 006303 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (651)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 333 (651)
+...+..|+..+...+++++|.++.+...+.... +....+..++....++..++ ....+++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~-----------------~lv~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDS-----------------NLLNLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhh-----------------hhhhhhhh
Confidence 4566777777777777777777777755544211 22222333322222221111 11145555
Q ss_pred HHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (651)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 413 (651)
.....++.-+..++..+.. ..-+...+-.+..+|-+.|+.+++..+|+++++.. +-|..+.|.+...|... +
T Consensus 93 ~~~~~~~~~ve~~~~~i~~------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILL------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred cccccchhHHHHHHHHHHh------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 5555556555555555554 23455577777888888888888888888888776 33777788888888777 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCC
Q 006303 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (651)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (651)
.++|.+++.+.... +...+++..+.+++.++....
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~------------------------------ 199 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN------------------------------ 199 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC------------------------------
Confidence 88888877777543 556667777777777776542
Q ss_pred CCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhcCCChHHHHHHHH
Q 006303 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV-GLSPNHISWTILIDACGGSGNVEGALQILK 572 (651)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (651)
|+ +++.-.++.+.+... |..--..++--+-..|-...+++++..++.
T Consensus 200 -------------------~~-------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 200 -------------------SD-------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -------------------cc-------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 21 222333333444332 323334455556666777788888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH
Q 006303 573 IMREDGMSPDVVAYTTAIKVCV 594 (651)
Q Consensus 573 ~~~~~~~~p~~~~~~~li~~~~ 594 (651)
.+.+..-+ |.....-++.+|.
T Consensus 248 ~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCc-chhhHHHHHHHHH
Confidence 88875322 5555556666655
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00022 Score=62.86 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhh------cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 515 TTTYNILMKACCT------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588 (651)
Q Consensus 515 ~~~~~~ll~~~~~------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 588 (651)
..|.+-|..++.+ ....|.-+|++|.+. ..|+..+.+....++...|++++|..++++...+.-+ ++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHH
Confidence 3444545555432 355677777777653 4678888888888888888888888888888876433 5666666
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHH
Q 006303 589 AIKVCVRSKRL-KQAFSLFEEMK 610 (651)
Q Consensus 589 li~~~~~~g~~-~~A~~~~~~m~ 610 (651)
+|..-...|+. +-..+.+.+++
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHH
Confidence 66665566654 33445555555
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00035 Score=61.64 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=150.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 412 (651)
-+.-.|.+..++..-..... .+-+...-..+.++|...|.+.....-. ... -.|....+..+......-+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~------~~~~~e~d~y~~raylAlg~~~~~~~eI---~~~-~~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSS------SKTDVELDVYMYRAYLALGQYQIVISEI---KEG-KATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcc------ccchhHHHHHHHHHHHHccccccccccc---ccc-cCChHHHHHHHHHHhhCcc
Confidence 34445677666655544432 1233344445566777777665433222 222 2344444544444444444
Q ss_pred CHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhcccccc
Q 006303 413 LVEQ-AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (651)
Q Consensus 413 ~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (651)
+.+. ..++.+.+.......+......-...|++.|++++|++..+...
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------------------------------- 135 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------------------------------- 135 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------------------------------
Confidence 4443 33444555544434443333334456888999999998887521
Q ss_pred CCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----CCChHHH
Q 006303 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG----SGNVEGA 567 (651)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 567 (651)
..+....+.-|..-....+.|.+.+++|.+- .+..|.+.|..++.+ .+.+.+|
T Consensus 136 --------------------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 136 --------------------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 2233333333333334678888888999873 456677767666654 4578999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006303 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (651)
Q Consensus 568 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 636 (651)
.-+|++|.++ ..|+..+.+....++...|++++|..++++..... .-+..+...++-+....|+-.+
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChH
Confidence 9999999875 57899999999999999999999999999999764 4467777777777777777644
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.39 E-value=4.1e-05 Score=70.80 Aligned_cols=187 Identities=11% Similarity=-0.023 Sum_probs=110.7
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-Cc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
...+..++..+.+.|++++|...|+++...... |. ..++..+..++...|++++|+..++++.+.........
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~----- 107 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD----- 107 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH-----
Confidence 366777888899999999999999998874321 11 24677888889999999999999999887632211100
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH--------hcCCHHHHHHHHHHHHHhhhcCCccccHH-HHHHH
Q 006303 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC--------LAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTI 369 (651)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l 369 (651)
.++..+..++. ..|+.++|.+.|+.+... .|+.. .+..+
T Consensus 108 --------------------------~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~a~ 155 (235)
T TIGR03302 108 --------------------------YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR------YPNSEYAPDAK 155 (235)
T ss_pred --------------------------HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH------CCCChhHHHHH
Confidence 01111222222 236677788888877762 23322 22211
Q ss_pred HHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcC
Q 006303 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNILLQACVEAC 447 (651)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g 447 (651)
.... . .... . ......+...+.+.|++++|...++...+... +.....+..+..++.+.|
T Consensus 156 ~~~~-~---~~~~------~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 156 KRMD-Y---LRNR------L--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHHH-H---HHHH------H--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 1110 0 0000 0 00112344556777777777777777766521 123456667777777777
Q ss_pred ChhHHHHHHHHhhhc
Q 006303 448 QFDRAFRLFRSWTLS 462 (651)
Q Consensus 448 ~~~~a~~~~~~~~~~ 462 (651)
++++|...++.+...
T Consensus 218 ~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 218 LKDLAQDAAAVLGAN 232 (235)
T ss_pred CHHHHHHHHHHHHhh
Confidence 777777777666543
No 120
>PLN02789 farnesyltranstransferase
Probab=98.38 E-value=0.00073 Score=64.48 Aligned_cols=207 Identities=9% Similarity=0.017 Sum_probs=116.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 411 (651)
.+...++.++|..++.++.++ .+-+..+|+.--.++...| ++++++..++++.....+ +..+|+.....+.+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l-----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL-----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH-----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 334455666777777766653 1223334555445555555 467777777776665433 445565554445555
Q ss_pred CCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhcccc
Q 006303 412 GLV--EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489 (651)
Q Consensus 412 g~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (651)
|+. +.++.+++++.+.+ +-+..+|+....++.+.|+++++++.++++.+.++
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~------------------------- 173 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV------------------------- 173 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-------------------------
Confidence 542 55666666666654 34555666666666666777777777777665432
Q ss_pred ccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh---------cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 006303 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---------DYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (651)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 560 (651)
.|...|+.....+.+ ..+.......+++... +-|...|+-+...+..
T Consensus 174 -----------------------~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 174 -----------------------RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred -----------------------CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 222223222221110 1234555555665532 2255677777777766
Q ss_pred C----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 561 S----GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS 596 (651)
Q Consensus 561 ~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 596 (651)
. ++..+|...+.+..+.+ ..+......|++.|+..
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 230 DKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred CCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 3 44566888888876643 23566777888888753
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=8.7e-05 Score=65.41 Aligned_cols=166 Identities=11% Similarity=0.002 Sum_probs=121.1
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
|.+..+ ..+...+...|+-+....+....... ...+....+..+....+.|++.+|+..+.+....
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l------------ 129 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL------------ 129 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc------------
Confidence 444444 55556666667777776666665432 1234555666777777777777777777776543
Q ss_pred HHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc
Q 006303 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (651)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 377 (651)
-++|...|+.+.-+|.+.|+.++|..-|.+..++ ..-+...+|.|...|.-.|
T Consensus 130 ----------------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 130 ----------------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEPSIANNLGMSLLLRG 182 (257)
T ss_pred ----------------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCchhhhhHHHHHHHcC
Confidence 1568888999999999999999999999888875 2345667888888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (651)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 425 (651)
+++.|..++......+. -|...-..+.......|+++.|..+-..-.
T Consensus 183 d~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 183 DLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 99999999988887653 377777788888888999999888776554
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=4.3e-05 Score=76.66 Aligned_cols=211 Identities=13% Similarity=0.057 Sum_probs=98.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC--C
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--D 304 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~ 304 (651)
+.+.+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..++ +||...|..+...... -
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 4444444444455555444432 2333444444444444444444444432 3444444444333221 2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHH
Q 006303 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (651)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 384 (651)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.++ .+.-..+|-.+..+..+.++++.|.+
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-----nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-----NPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-----CccchhHHHhccHHHHHHhhhHHHHH
Confidence 33444444332211 1111112222345555555555554443 13334455555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 385 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.|....... +-+...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|...+-...+.|.+++|++.++++...
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 555555432 1134455555555555555555555555555554 333334444444455555555555555555444
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=0.0004 Score=74.92 Aligned_cols=227 Identities=10% Similarity=0.007 Sum_probs=165.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-----cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 397 (651)
+...|...|......++.+.|.++.+++... +.+ -...|.++++.-..-|.-+...++|+++.+.. -.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-----IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~ 1529 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-----INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DA 1529 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-----CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--ch
Confidence 4567888888888999999999999988753 212 13367777777777788888999999998752 13
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchh
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (651)
...|..|...|.+.+++++|.++|+.|.+.- .....+|...++.+.+.++-+.|..++.+.++.-....
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e---------- 1598 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE---------- 1598 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh----------
Confidence 4568889999999999999999999998863 45677898899999999998999999887765311000
Q ss_pred hhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006303 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557 (651)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 557 (651)
-.....-.+.+.--.++.+++..+|+.....- +-....|+.+|+.
T Consensus 1599 ----------------------------------Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1599 ----------------------------------HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDM 1643 (1710)
T ss_pred ----------------------------------hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHH
Confidence 00011111222222357888889999888752 2367799999999
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 006303 558 CGGSGNVEGALQILKIMREDGMSPDV--VAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A 602 (651)
-.+.|+.+.+..+|++.+..++.|-. ..|.-.+.---..|+-+.+
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 99999999999999999998877653 4566666655556664433
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00025 Score=74.86 Aligned_cols=134 Identities=11% Similarity=-0.026 Sum_probs=107.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 399 (651)
..+...+..|.....+.|.+++|..+++.+.+ +.|+ ......+...+.+.+++++|+..+++....... +..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHH
Confidence 34678888888888899999999999998887 3455 456777888889999999999999998877533 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
....+..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777888888999999999999998743 345678888888888899999999999887654
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=0.00023 Score=75.91 Aligned_cols=148 Identities=9% Similarity=0.050 Sum_probs=97.6
Q ss_pred CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----ccHHHH
Q 006303 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-----LNIYVF 294 (651)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-----~~~~~~ 294 (651)
+..++..++.+|-+.|+.+++..+|+++++.. +-|+.+.|.+...|+.. ++++|.+++.+....-+. .=...|
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W 192 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIW 192 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 34567778888888888888888888888855 24677888888888888 888888888777654211 011122
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHH
Q 006303 295 NSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (651)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (651)
..++..-..+++.-.++.+.+... |..--..++--+-..|...++++++..+++.+.+.. +.|.....-++.+|
T Consensus 193 ~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-----~~n~~a~~~l~~~y 267 (906)
T PRK14720 193 SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-----NKNNKAREELIRFY 267 (906)
T ss_pred HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-----CcchhhHHHHHHHH
Confidence 222222234555566666666554 333345566667778888889999999999998742 33555666677666
Q ss_pred H
Q 006303 374 A 374 (651)
Q Consensus 374 ~ 374 (651)
.
T Consensus 268 ~ 268 (906)
T PRK14720 268 K 268 (906)
T ss_pred H
Confidence 5
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=0.00025 Score=62.82 Aligned_cols=125 Identities=12% Similarity=0.102 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHH-HcccC--HH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF-ADAKW--WQ 380 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~ 380 (651)
+.+++...++...+.. +.|...|..|...|...|++++|...|++..++ .+.+...+..+..++ ...|+ .+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 3455555555555543 457889999999999999999999999999884 244667777777764 67777 59
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
+|.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+.. +|+..-+
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 999999999987644 77888889999999999999999999998875 4554433
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=0.00028 Score=74.44 Aligned_cols=115 Identities=3% Similarity=-0.098 Sum_probs=60.5
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.|++++|..+++.+++.. |++..++..++..+.+.+++++|+..+++ .|.+....+.+..++.+.|++++|..+
T Consensus 99 ~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred cCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 344444444444444422 44444444444444444444444433322 244445555666666666666666666
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
|+++...+. -+..++..+...+.+.|+.++|...|+.....
T Consensus 177 y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 177 FERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666665211 23556666666666666666666666666543
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.20 E-value=9.7e-05 Score=61.68 Aligned_cols=119 Identities=10% Similarity=-0.013 Sum_probs=90.4
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHH
Q 006303 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (651)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 388 (651)
..++++..+. ++..+..+...+...|++++|...|+..... -+.+...|..+..++...|++++|...|+.
T Consensus 13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555543 3334556777888899999999999998873 245677888899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 389 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
..... +.+...+..+..++.+.|+.++|...|+...+.. +.+...+..
T Consensus 84 Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~ 131 (144)
T PRK15359 84 ALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEI 131 (144)
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 99865 3477888889999999999999999999988764 233334433
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00056 Score=59.92 Aligned_cols=184 Identities=15% Similarity=0.079 Sum_probs=112.9
Q ss_pred cCChHHHHHHHHHHHHh---c-CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHH
Q 006303 84 DGRLEEFAMIVESVVVS---E-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (651)
Q Consensus 84 ~g~~~~A~~~~~~~~~~---~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~ 159 (651)
..+.++..+++..++.. | ..|+. +..+..++.+..-.|+.+.|...++++... .|...-...+..++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~------w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~- 95 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEI------WTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAML- 95 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchH------HHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHH-
Confidence 35667888888887754 2 33342 344556677778899999999999988874 24332111222222
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHH----HhhhCCCCCccHHHHHHHHhhcC
Q 006303 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCNFVREFGKKR 235 (651)
Q Consensus 160 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~~~~~~~l~~~~~~~g 235 (651)
+-..|++++|+++|+.+++.+ |++...+-.-+...-..|+..+|++ +++.++.+.++|.-+.+.|...|
T Consensus 96 -----lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 96 -----LEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred -----HHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 233689999999999998866 6666655555555555666556654 34556666677777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 006303 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG---DYMKSRAIYEDLRSQ 285 (651)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 285 (651)
+++.|.-.++++.- +.| +...+..+.+.+--.| +.+.+.+.|.+..+.
T Consensus 169 ~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 169 DFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 77777777777665 334 3334444444433322 344555555555544
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.15 E-value=0.0096 Score=58.30 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 588 (651)
.|+. +|..+|+...+ ..+.|..+|.++.+.+..+ +..++++++.-||. ++...|.++|+.=.++ ..-++.-...
T Consensus 364 ~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~ 440 (656)
T KOG1914|consen 364 DLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLK 440 (656)
T ss_pred CCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHH
Confidence 4443 34455554433 6788999999999988777 77888999987764 7889999999986664 2223444567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 006303 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNL--VTYITLLRARSRYGSLHEVQQC 640 (651)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~ 640 (651)
.+.-+.+.++-..|..+|++....++.||. ..|..++.-=...|+...+.++
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 888899999999999999999987777665 7999999999999998876553
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.4e-06 Score=50.23 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 617 (651)
+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 578888888888888888888888888788776
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.016 Score=60.34 Aligned_cols=435 Identities=11% Similarity=0.108 Sum_probs=242.7
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.+++..|++..++++... |+...+...-+-...+.|..++|..+++.. +.+..+...+-..|.+.++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 589999999999998865 443332222233455789999999887764 34567788889999999999999999
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCcccHHHHHHHHHhhc----C--------ChHH
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMK----SRAIYEDLRSQNVTLNIYVFNSLMNVNA----H--------DLKF 307 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~g~~~~~~~~~~ll~~~~----~--------~~~~ 307 (651)
|+...+. .|+......+..+|.+.+++.+ |.+++.... -+.+.+-+++.... + -..-
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-----k~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-----KRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----cccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 9999874 4777777777888888887754 555555333 24555555555422 1 1234
Q ss_pred HHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH-HHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHH
Q 006303 308 TLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (651)
Q Consensus 308 a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 385 (651)
|.+.++.+.+.+ ---+..-...-...+...|++++|.+++.. ..... ...+...-+.-+..+...++|.+..++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l----~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL----TSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc----cccchHHHHHHHHHHHHhcChHHHHHH
Confidence 677777776654 222222333344566678999999999943 32210 233444455667888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH----------------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhc
Q 006303 386 KEDMLSAGVTPNTITWSSLINACA----------------NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA---CVEA 446 (651)
Q Consensus 386 ~~~m~~~~~~~~~~~~~~ll~~~~----------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~ 446 (651)
-.++...|.. | |...+..+. ..+..+...+...+..... ..++ |-+-+.+ +..-
T Consensus 249 ~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rgp--~LA~lel~kr~~~~ 321 (932)
T KOG2053|consen 249 SSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRGP--YLARLELDKRYKLI 321 (932)
T ss_pred HHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccCc--HHHHHHHHHHhccc
Confidence 9999988633 2 222222111 1122233333333322221 1111 2222222 2345
Q ss_pred CChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccc-cccCCCH---------H
Q 006303 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR-FSFKPTT---------T 516 (651)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~ 516 (651)
|+.+++.-.|-+ +-+..+....+.......+.--+. ..++.. .+..++. .
T Consensus 322 gd~ee~~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~------------------~~l~~~l~~~~~~~s~~~k~l~~h 381 (932)
T KOG2053|consen 322 GDSEEMLSYYFK--KFGDKPCCAIDLNHYLGHLNIDQL------------------KSLMSKLVLADDDSSGDEKVLQQH 381 (932)
T ss_pred CChHHHHHHHHH--HhCCCcHhHhhHHHhhccCCHHHH------------------HHHHHHhhccCCcchhhHHHHHHH
Confidence 677765444422 111111111110000000000000 000000 0011221 2
Q ss_pred HHHHHHHHHhh-----cHHHHHHHHHHHH---HcC------CCCcHH---------HHHHHHHHHhcCCChH---HHHHH
Q 006303 517 TYNILMKACCT-----DYYRVKALMNEMR---TVG------LSPNHI---------SWTILIDACGGSGNVE---GALQI 570 (651)
Q Consensus 517 ~~~~ll~~~~~-----~~~~a~~~~~~~~---~~~------~~p~~~---------~~~~li~~~~~~g~~~---~A~~~ 570 (651)
+.+..+...++ +.+....++.+.. +.| +-|+.. +.+.|++.|.+.++.. +|+-+
T Consensus 382 ~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~L 461 (932)
T KOG2053|consen 382 LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITL 461 (932)
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 23333333333 2344444443332 223 233432 2468888999998876 34445
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 571 LKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644 (651)
Q Consensus 571 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 644 (651)
++.-.... +-|..+--.+|..|+-.|-+..|.++|+-|--..++-|...+. +.+-+.-.|++..+...+.-.
T Consensus 462 LE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 462 LENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHH
Confidence 55554432 2244445578899999999999999999997666777766553 445556678887776654443
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00092 Score=59.13 Aligned_cols=130 Identities=14% Similarity=0.005 Sum_probs=112.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
.|......++....+.|++..|...+++.... -++|...|+.+..+|.+.|++++|..-|.+..+... -+...+
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~ 171 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIA 171 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhh
Confidence 46667777899999999999999999999874 478899999999999999999999999999998643 366778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 402 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
+.+.-.+.-.|+.+.|..++......+ .-+..+-..+.-+....|++++|.++...
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888888999999999999999998875 44677778888888999999999988764
No 134
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.12 E-value=0.00024 Score=59.30 Aligned_cols=109 Identities=7% Similarity=-0.106 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (651)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 423 (651)
..+|++..+ +.|+. +..+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++
T Consensus 13 ~~~~~~al~------~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLS------VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHH------cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456666665 34543 5567888899999999999999999875 34788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 424 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
..+.+ +.+...+..+..++.+.|++++|...|+.....
T Consensus 84 Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 84 ALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99875 567788899999999999999999999987754
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=6e-06 Score=49.16 Aligned_cols=33 Identities=27% Similarity=0.639 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006303 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616 (651)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 616 (651)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456677777777777777777777777666665
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=0.0076 Score=58.42 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=91.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 006303 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACAN 410 (651)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 410 (651)
..+...|++++|+..++.+... .+-|...+......+.+.++.++|.+.++++... .|+ ....-.+..++.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~ 386 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-----QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence 3445678888888888887763 2344555566677888889999999999888876 344 5566677888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
.|++.+|+.+++...... +.++..|..|..+|...|+..++..-..+
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 899888888888887765 66788888888899888888888766654
No 137
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.01 E-value=0.016 Score=55.64 Aligned_cols=457 Identities=13% Similarity=0.050 Sum_probs=246.9
Q ss_pred HhhhccCChHHHHHHHHHHHHhcC-ChhHHHhhhhHHHH-HhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~-~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 156 (651)
-.+.+++++.+|+.+|.+....-. .|..+ ..+++ +.++.+| -..+.+.-...+....+. .|.. .+-.
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~l----keEvl~grilnAf-fl~nld~Me~~l~~l~~~--~~~s-~~l~--- 82 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLL----KEEVLGGRILNAF-FLNNLDLMEKQLMELRQQ--FGKS-AYLP--- 82 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHH----HHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHh--cCCc-hHHH---
Confidence 345678999999999999877622 22222 23444 3444444 455566666666666653 2322 1222
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCC
Q 006303 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (651)
Q Consensus 157 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~ 236 (651)
+..+...|. .+.+..|++.+......-........-..+-..+ .+-..-+..++++...|+
T Consensus 83 -LF~~L~~Y~-~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~-----------------~df~l~~i~a~sLIe~g~ 143 (549)
T PF07079_consen 83 -LFKALVAYK-QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF-----------------SDFFLDEIEAHSLIETGR 143 (549)
T ss_pred -HHHHHHHHH-hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh-----------------hHHHHHHHHHHHHHhcCC
Confidence 333333443 4888888888876554311111111001110000 111223345677778888
Q ss_pred HHHHHHHHHHHHhcCCC----CcHHhHHHHHHHHHhc--------CC-------HHHHHHHHHHHHhC------CCcccH
Q 006303 237 LVSALRAYDASKKHLSS----PNMYICRTIIDVCGIC--------GD-------YMKSRAIYEDLRSQ------NVTLNI 291 (651)
Q Consensus 237 ~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~--------g~-------~~~a~~~~~~~~~~------g~~~~~ 291 (651)
+.+++.+++++...-.+ -+..+|+.++-.+++. .. ++.+.-...+|... .+.|..
T Consensus 144 f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pee 223 (549)
T PF07079_consen 144 FSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEE 223 (549)
T ss_pred cchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHH
Confidence 88888888877765443 4677777655444432 11 11122222222211 223444
Q ss_pred HHHHHHHHhhc----CChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH
Q 006303 292 YVFNSLMNVNA----HDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (651)
Q Consensus 292 ~~~~~ll~~~~----~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (651)
..+..++.... ....--.+++......-+.|+.. ....|...+.. +.+++..+.+.+....-...-+-=..++
T Consensus 224 eL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F 301 (549)
T PF07079_consen 224 ELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRF 301 (549)
T ss_pred HHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444322 12333344444444444556643 34445555544 5566666655554321000001124468
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHH-
Q 006303 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS-------LINACAN----AGLVEQAMHLFEEMLQAGCEPNSQ- 434 (651)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~- 434 (651)
..++....+.++...|.+.+..+... .|+...-.. +-+..+. .-+..+-+.+++.....++ |..
T Consensus 302 ~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQ 377 (549)
T PF07079_consen 302 GNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQ 377 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHH
Confidence 88888899999999999998887754 333322111 1122221 1123334455555554432 221
Q ss_pred HHHHHHH---HHHhcCC-hhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccc
Q 006303 435 CCNILLQ---ACVEACQ-FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (651)
Q Consensus 435 ~~~~ll~---~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (651)
....|+. -+-+.|. -++|+++++.+..-.
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft----------------------------------------------- 410 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT----------------------------------------------- 410 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-----------------------------------------------
Confidence 2222333 3444555 788888888776431
Q ss_pred cCCCHHHHHHHHH----HHhh-----cHHHHHHHHHHHHHcCCCC----cHHHHHHHHHH--HhcCCChHHHHHHHHHHH
Q 006303 511 FKPTTTTYNILMK----ACCT-----DYYRVKALMNEMRTVGLSP----NHISWTILIDA--CGGSGNVEGALQILKIMR 575 (651)
Q Consensus 511 ~~~~~~~~~~ll~----~~~~-----~~~~a~~~~~~~~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~~~ 575 (651)
.-|..+-|.+.. +|.. ...+-..+-+-+.+.|+.| +...-|.|.++ +...|++.++.-.-.-+.
T Consensus 411 -~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 411 -NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 223333333332 2221 2344455555666778877 44455666655 567899999987766666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 576 EDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (651)
Q Consensus 576 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 626 (651)
+ +.|++.+|..+.-++....++++|..++..+ +||..++++=+.
T Consensus 490 ~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskvq 533 (549)
T PF07079_consen 490 K--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKVQ 533 (549)
T ss_pred H--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHHH
Confidence 6 6899999999999999999999999999876 677777766544
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00046 Score=57.30 Aligned_cols=106 Identities=8% Similarity=0.000 Sum_probs=82.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+......+...+...|++++|.+.|+.+... .+.+...+..+...+...|++++|..+++.....+ +.+...+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 3455666777888889999999999888763 24467788888889999999999999999887765 34677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
.+..++...|+++.|...|+...+.. |+...+
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 121 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEIC--GENPEY 121 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc--cccchH
Confidence 88888899999999999999888763 444443
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.3e-05 Score=48.07 Aligned_cols=34 Identities=44% Similarity=0.707 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH
Q 006303 550 SWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583 (651)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 583 (651)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.7e-05 Score=47.21 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC
Q 006303 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSP 581 (651)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 581 (651)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00051 Score=57.02 Aligned_cols=99 Identities=10% Similarity=0.056 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
+......+...+...|++++|...|+.+...+ +.+...+..+..++.+.|++++|..+++...+.+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 44567778888999999999999999998865 3477888899999999999999999999998875 556777888888
Q ss_pred HHHhcCChhHHHHHHHHhhhc
Q 006303 442 ACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~ 462 (651)
+|...|++++|...|+.....
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999987764
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.013 Score=51.79 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=129.5
Q ss_pred cCCHHHHHHHHHHHHhc---C-CCCcHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHHhhcCChHH
Q 006303 234 KRDLVSALRAYDASKKH---L-SSPNMYI-CRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKF 307 (651)
Q Consensus 234 ~g~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~ 307 (651)
..+.++.++++.++... | ..++.++ |..++-+....|+.+.|..+++.+..+-.. +.+.-..+++--..|.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 35667777777766542 2 3355443 445555666778888888888887765321 1222333333334478888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
|.++++.+.+.. +.|..++-.-+...-..|+-.+|++-+....+. +..|...|.-+...|...|+++.|.-+++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 899998888876 456777777777777778877888877776654 67899999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 006303 388 DMLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQAG 428 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~ 428 (651)
+++-..+ -+...+..+...+.-.| +.+.+.++|.+..+..
T Consensus 179 E~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 179 ELLLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9987632 24444555555444333 4677889999888764
No 143
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.0004 Score=52.61 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 552 TILIDACGGSGNVEGALQILKIMREDGM-SPDVVAYTTAIKVCVRSK--------RLKQAFSLFEEMKHYQIQPNLVTYI 622 (651)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 622 (651)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455566666889999999999999888 889999998888877653 2446788999999999999999999
Q ss_pred HHHHHHHh
Q 006303 623 TLLRARSR 630 (651)
Q Consensus 623 ~l~~~~~~ 630 (651)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99998765
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0059 Score=57.85 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=37.1
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
....|...+..|...|++++|...|.+.......-... ......+...+..+ +..++++|+..+++..+
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCY-KKGDPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Confidence 46677788888888888888888888775542111100 00123333333333 33366666666665554
No 145
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.82 E-value=0.034 Score=53.32 Aligned_cols=89 Identities=7% Similarity=0.064 Sum_probs=63.9
Q ss_pred CCCCCCCcccccchhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcC-ChhHHHhhhhHHHHHhHHHHhh
Q 006303 46 LSSIPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSI 124 (651)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~ 124 (651)
..|..+.+...+.+.+.+..+|.+ ...|-.|++.+...|..++..+++++|..--. -|..|.. -++.-.
T Consensus 18 ae~~~~i~~D~lrLRerIkdNPtn-I~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~l---------y~s~EL 87 (660)
T COG5107 18 AEPSDNIHGDELRLRERIKDNPTN-ILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRL---------YMSGEL 87 (660)
T ss_pred cCcccCCCchHHHHHHHhhcCchh-HHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHH---------Hhcchh
Confidence 335556666667788888888988 99999999999999999999999999986521 2222211 122233
Q ss_pred hhcChhHHHHHHHHHHHcCC
Q 006303 125 REGRIDCVVGVLKKLNELGV 144 (651)
Q Consensus 125 ~~g~~~~a~~~l~~~~~~~~ 144 (651)
...++..++.+|.+-+..-+
T Consensus 88 A~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 88 ARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred hhhhHHHHHHHHHHHHhhhc
Confidence 46788888888887776433
No 146
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=0.02 Score=55.56 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=115.0
Q ss_pred HHHHHHHh-hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHH
Q 006303 293 VFNSLMNV-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIV 370 (651)
Q Consensus 293 ~~~~ll~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 370 (651)
-|..-+.. ..++++.|+..++.+...- +-|+.-+......+.+.++..+|.+.++.+.. ..|+ ...+-.+.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~------l~P~~~~l~~~~a 381 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA------LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCCccHHHHHHH
Confidence 34444443 3488999999999988762 44666667778899999999999999999998 4566 56677889
Q ss_pred HHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 006303 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (651)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 450 (651)
.+|.+.|+..+|+.+++...... +-|...|..|..+|...|+..++.....+. |...|+++
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~ 442 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLE 442 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHH
Confidence 99999999999999999988774 448999999999999999998887766554 45678888
Q ss_pred HHHHHHHHhhhc
Q 006303 451 RAFRLFRSWTLS 462 (651)
Q Consensus 451 ~a~~~~~~~~~~ 462 (651)
.|+..+....+.
T Consensus 443 ~A~~~l~~A~~~ 454 (484)
T COG4783 443 QAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHh
Confidence 888887766544
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.80 E-value=0.0013 Score=55.16 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=91.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT--ITWS 402 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~ 402 (651)
..|..++..+ ..++...+...++.+.... +..+......-.+...+...|++++|...|+........++. ....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3455555555 4788888888888887621 101111234445668888999999999999999987533322 2445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
.+...+...|++++|+..++..... ......+....++|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5678888999999999999775433 334556777888999999999999998763
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.78 E-value=0.00043 Score=67.63 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=105.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH
Q 006303 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (651)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 398 (651)
+.+.+......+++.+....+++++..++-......... ..-..+..++++.|.+.|..+.++.+++.=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~--~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCS--YLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccc--cccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 445677788888888888888999999888887632122 222335569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006303 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (651)
.+++.||+.+.+.|++..|.++..+|..++...+..++...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999888778888888888887776
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.0012 Score=64.37 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
...|+..+...++++.|.++|+++.+ ..|+ ....++..+...++-.+|.+++++.+... +.+......-..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~------~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE------RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh------cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566667778899999999999986 2344 44568888888899999999999999763 336777777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.|.+.++++.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+..
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8999999999999999999873 33445899999999999999999999987653
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3e-05 Score=44.87 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (651)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.74 E-value=0.001 Score=55.85 Aligned_cols=131 Identities=14% Similarity=0.080 Sum_probs=76.3
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhH-HHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK-FASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
...|..++..+. .++...+...++.+... .|++ +. ..+.-.++..+...|++++|...|+++.+.. |+..
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~s~ya----~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~ 82 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKD--YPSSPYA----ALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPE 82 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHH--CCCChHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHH
Confidence 445666666663 77778888888888877 4443 32 2222345666777888888888888888754 3221
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (651)
... -..++....+...|++++|+..++...... .. +..+..+.+
T Consensus 83 l~~---~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~---~~------------------------------~~~~~~~Gd 126 (145)
T PF09976_consen 83 LKP---LARLRLARILLQQGQYDEALATLQQIPDEA---FK------------------------------ALAAELLGD 126 (145)
T ss_pred HHH---HHHHHHHHHHHHcCCHHHHHHHHHhccCcc---hH------------------------------HHHHHHHHH
Confidence 111 112223334555677777777775532111 11 133445666
Q ss_pred HHhhcCCHHHHHHHHHH
Q 006303 230 EFGKKRDLVSALRAYDA 246 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~ 246 (651)
+|.+.|++++|+..|+.
T Consensus 127 i~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77777777777777765
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.72 E-value=0.0016 Score=63.44 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=62.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCCh
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 305 (651)
+|+..+...++++.|+.+|+++.+.. |+ ....+.+.+...++-.+|++++++.....
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~------------------- 230 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN------------------- 230 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------------------
Confidence 34445555556666666666655532 32 22334444444455555555554444220
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHH
Q 006303 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALK 384 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 384 (651)
+.+...+..-...+.+.++++.|.++.+++... .|+ ..+|..|..+|...|+++.|+.
T Consensus 231 ---------------p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 231 ---------------PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred ---------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 123444444455556666666666666666652 333 3356666666666666666666
Q ss_pred HHHHHH
Q 006303 385 VKEDML 390 (651)
Q Consensus 385 ~~~~m~ 390 (651)
.++.+.
T Consensus 290 aLNs~P 295 (395)
T PF09295_consen 290 ALNSCP 295 (395)
T ss_pred HHhcCc
Confidence 555443
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.0041 Score=58.94 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH--H
Q 006303 550 SWTILIDACGGSGNVEGALQILKIMREDGMS-----PDVV-AYTTAIKVCVRSKRLKQAFSLFEEMKHY--QIQPNL--V 619 (651)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~--~ 619 (651)
++..+...+.+.|++++|.++|++....-.. .+.. .|-..+-++...||...|.+.+++.... ++..+. .
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4556666777777777777777777653221 1121 2222333555667777777777777632 233332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006303 620 TYITLLRARSRYGSLHEVQQCLAVYQDM 647 (651)
Q Consensus 620 ~~~~l~~~~~~~g~~~~a~~~~~~~~~m 647 (651)
....|+.++ ..|+.+....++.-|+.+
T Consensus 237 ~~~~l~~A~-~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 237 FLEDLLEAY-EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHH-HTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHccc
Confidence 444555554 445555555555555443
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.69 E-value=0.00061 Score=66.61 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=100.3
Q ss_pred CCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 587 (651)
..+......++..+.. +.+.+..++...... ...--..|..++|+.|.+.|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4456677777887764 678888888888764 222233455699999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 631 (651)
.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999777778888888888888776
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.65 E-value=0.0015 Score=49.57 Aligned_cols=79 Identities=11% Similarity=0.295 Sum_probs=63.7
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 006303 367 STIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWSSLINACANAG--------LVEQAMHLFEEMLQAGCEPNSQCCN 437 (651)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (651)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666666889999999999999888 889999999998877653 2446778888999999999999999
Q ss_pred HHHHHHHh
Q 006303 438 ILLQACVE 445 (651)
Q Consensus 438 ~ll~~~~~ 445 (651)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.63 E-value=0.00064 Score=58.56 Aligned_cols=87 Identities=24% Similarity=0.317 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 006303 547 NHISWTILIDACGGS-----GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS----------------KRLKQAFSL 605 (651)
Q Consensus 547 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~ 605 (651)
+-.+|..+++.|.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 444444444444322 33444444455555555555555555555444321 234668888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 606 FEEMKHYQIQPNLVTYITLLRARSRYGS 633 (651)
Q Consensus 606 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 633 (651)
+++|...|+-||..|+..+++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888877665
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=6.6e-05 Score=43.41 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 006303 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579 (651)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (651)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998764
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.58 E-value=0.00072 Score=55.55 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=59.1
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 239 (651)
.+-+.|++++|..+|+-+.... |.+...|..|+..|...|++.+|...|... |+++..+..+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 4445799999999998887754 667777777777777777777777666553 5556666667777777777777
Q ss_pred HHHHHHHHHh
Q 006303 240 ALRAYDASKK 249 (651)
Q Consensus 240 a~~~~~~~~~ 249 (651)
|++.|+....
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 7776666554
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.0039 Score=50.22 Aligned_cols=102 Identities=11% Similarity=-0.047 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC--CCHHHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWS 402 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~ 402 (651)
.++..+...+.+.|++++|.+.|+.+...... .+.....+..+..++.+.|++++|...|+.+...... .....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 34566777788889999999999888763110 0112346667888899999999999999988865322 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
.+..++.+.|+.++|...++++.+..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 77888888999999999999988874
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.53 E-value=0.018 Score=52.80 Aligned_cols=183 Identities=8% Similarity=-0.012 Sum_probs=114.8
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhh
Q 006303 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (651)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 155 (651)
..+..+...|++++|+..|+.+... .|.+-. ...+...++..+.+.++++.|+..+++..+. .|+..... +
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~---a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~--~ 107 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPY---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNID--Y 107 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchH--H
Confidence 4455556789999999999999998 444311 2444567888899999999999999999984 45433111 1
Q ss_pred HHHHHHHHH--H---------------hhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCC
Q 006303 156 KLLKNECQR--L---------------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (651)
Q Consensus 156 ~~l~~~~~~--~---------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 218 (651)
..+..+.+. + .+.....+|+..|++++... |++.. ..+|......+.
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~y--------------a~~A~~rl~~l~ 171 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQY--------------TTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChh--------------HHHHHHHHHHHH
Confidence 122222111 0 01122456777777777654 43321 112221111110
Q ss_pred CC-CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CcHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 219 RA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (651)
Q Consensus 219 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 283 (651)
.. ..--..+...|.+.|++..|..-++.+.+.-.. ....+...+..+|...|..++|......+.
T Consensus 172 ~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 172 DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00 011124677899999999999999999875321 235567788899999999999988776554
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.42 E-value=0.0034 Score=47.92 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.++....... .+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHH
Confidence 334555556666666666666666542 122334555566666666666666666666655432 23345555666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006303 407 ACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~ 426 (651)
.+...|+.+.|...+....+
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHc
Confidence 66666666666666665543
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0031 Score=59.47 Aligned_cols=142 Identities=10% Similarity=0.075 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCC
Q 006303 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (651)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (651)
.+|..+++..-+.+..+.|..+|.+.++.+. ...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~----------------------------------------------~~~ 35 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR----------------------------------------------CTY 35 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------------------S-T
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC----------------------------------------------CCH
Confidence 4677888888888888999999988764321 245
Q ss_pred CHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 006303 514 TTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD---VVAYTTA 589 (651)
Q Consensus 514 ~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 589 (651)
.+....+++..++ ++.+.|..||+...+. +..+...|...++.+.+.|+.+.|..+|++.+.. +.++ ...|..+
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKF 113 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHH
Confidence 6666777776664 5777799999998875 4557788889999999999999999999999875 3322 2488999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (651)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 625 (651)
+.-=.+.|+.+.+.++.+++.+. -|+...+..++
T Consensus 114 i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 114 IEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 99888999999999999988753 34433333333
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.41 E-value=0.0066 Score=50.00 Aligned_cols=93 Identities=6% Similarity=-0.041 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
.+...+...|++++|.++|+.+... -+-+..-|-.|..++-..|++++|+..|.......+ -|...+-.+..++
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY-----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 3445556778888888888877763 233455667777777778888888888888777654 3667777777788
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 006303 409 ANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~ 427 (651)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888887776653
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.19 Score=51.12 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=61.9
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.+.....|++|.+.|..-.. ....+.++.+...+++-+.+...+|.+....-.+.+++.+.|.-++|.+.
T Consensus 805 ~fa~~~~We~A~~yY~~~~~----------~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 805 TFAEMMEWEEAAKYYSYCGD----------TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccc----------hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHH
Confidence 34445666666666654211 23355556666666666667777777777777778888888887777776
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
|-+-.. |. +-+..|...++|.+|.++-+..
T Consensus 875 ~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 875 YLRRSL----PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHhccC----cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 654332 32 2344566667777777665543
No 165
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.41 E-value=0.013 Score=55.31 Aligned_cols=138 Identities=16% Similarity=0.052 Sum_probs=87.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHH----CCC-CCCH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS----AGV-TPNT 398 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~-~~~~ 398 (651)
..|..|.+.|.-.|+++.|+...+.-..+... |.-..-...+..+.++++-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777778888888766654432211 21112334667778888888888888887766542 221 1233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 399 ITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.+...|.+.|.-..++++|+.++.+-..- +..-....|..|..+|...|..++|+...+.-+..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45566777777777888888887654331 11223456777888888888888887776654443
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.40 E-value=0.0052 Score=53.12 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN-TVLAQEIYGEVKH 352 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~ 352 (651)
.+-+-|++++++|...|+-||..++..|++.+.+.+. ..+..++.-.|.+
T Consensus 117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999876654 3334444444444
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0033 Score=47.98 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
.+..+...+...|++++|..+++.+.+.. +.+...+..+...+...+++++|.+.++...+.. +.+...+..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999998764 2345778888999999999999999999998865 445567888888999
Q ss_pred hcCChhHHHHHHHHhhh
Q 006303 445 EACQFDRAFRLFRSWTL 461 (651)
Q Consensus 445 ~~g~~~~a~~~~~~~~~ 461 (651)
..|+++.|...+.....
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 99999999999987654
No 168
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.39 E-value=0.0028 Score=51.08 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=75.0
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
+..+-.++..+...|++++|+..|+.+... .|+... ...+...++..+...|+++.|+..|+++... .|+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTY---APNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPK 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccc---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCc
Confidence 345677888888999999999999999887 443210 1334456778899999999999999999874 343221
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 185 (651)
.. ..+...+..+.+.|+.++|...++++....
T Consensus 75 ~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 75 AP---DALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cc---HHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 11 223333445566899999999999988765
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.15 Score=48.72 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=83.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 404 (651)
.+.+..+.-+...|+...|.++-.+.. -|+..-|-..+.+|+..++|++-.++... +-++.-|...
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepF 243 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK--------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPF 243 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC--------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHH
Confidence 355566777778888888888877664 37888899999999999999887775432 1244678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 405 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
+.+|.+.|...+|..+..++ + +..-+..|.++|++.+|.+.--+
T Consensus 244 v~~~~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 244 VEACLKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999998888873 1 24567788899999988776543
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.35 E-value=0.00067 Score=50.57 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006303 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (651)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 416 (651)
.|+++.|+.+++++...... .++...+..+..+|.+.|++++|..++++ ...+. .+......+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHH
Confidence 45666777777766653200 01333444466666677777777766666 22111 122333344666666667776
Q ss_pred HHHHHHH
Q 006303 417 AMHLFEE 423 (651)
Q Consensus 417 a~~~~~~ 423 (651)
|+++|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666654
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.33 E-value=0.0021 Score=63.04 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=53.4
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 244 (651)
+...|++++|+..|++++... |.+.. ++..+..+|.+.|++++|+..+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--P~~~~------------------------------a~~~~a~~~~~~g~~~eAl~~~ 59 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--PNNAE------------------------------LYADRAQANIKLGNFTEAVADA 59 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHH------------------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 344689999999999988754 44444 4444555555556666666666
Q ss_pred HHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
+.+++... .+...|..+..+|...|++++|+..|+...+.
T Consensus 60 ~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 60 NKAIELDP-SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66655321 23445555556666666666666666665554
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.00047 Score=51.42 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=61.1
Q ss_pred ccCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006303 376 AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 454 (651)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999987432 2455566689999999999999999988 3332 1233444456888999999999999
Q ss_pred HHHH
Q 006303 455 LFRS 458 (651)
Q Consensus 455 ~~~~ 458 (651)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.26 E-value=0.0011 Score=46.56 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=49.3
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
++..+...|++++|+..|+++++. .|+ ...++..++..+...|++++|+..|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPD------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788899999999999999998 676 3566677788899999999999999999873
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.25 E-value=0.012 Score=46.74 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=42.1
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhc
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~ 184 (651)
.....+-..|+.++|+.+|++..+.|+.... ....++.....+...|++++|+.++++....
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566778888888888888876655432 3345566666666778888888888777653
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0078 Score=56.78 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CcccHHHHHHHHHhhc-CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006303 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (651)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (651)
.+|-.+++...+.+..+.|..+|.+.++.+ ...+++...++|..++ ++.+.|..+|+...+. .+.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 356666666666666777777777766542 2233444444443332 3444455555544432 223444455555555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006303 335 CLAGNTVLAQEIYGEVK 351 (651)
Q Consensus 335 ~~~g~~~~a~~~~~~~~ 351 (651)
.+.|+.+.|..+|+...
T Consensus 81 ~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 81 IKLNDINNARALFERAI 97 (280)
T ss_dssp HHTT-HHHHHHHHHHHC
T ss_pred HHhCcHHHHHHHHHHHH
Confidence 55555555555555544
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.23 E-value=0.014 Score=54.00 Aligned_cols=105 Identities=9% Similarity=-0.009 Sum_probs=79.5
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...|......+.+.|++++|+..|+.+++. .|+.. ....++..++..|...|++++|+..|+++.+. .|+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~- 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSP- 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCc-
Confidence 556666666667789999999999999998 55531 12456678899999999999999999999974 34332
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 185 (651)
.....+.+....+...|+.++|...|++++...
T Consensus 215 --~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 215 --KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred --chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 233445555556667899999999999998755
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.22 E-value=0.013 Score=57.59 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=64.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
...+...|++++|++.|+++.+. .+.+...|..+..+|...|++++|+..+++++.... .+...|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL-----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHH
Confidence 34455667778888887777763 234556677777777777888888888777776542 256667777777777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 006303 411 AGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~ 428 (651)
.|++++|...|++..+.+
T Consensus 83 lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 83 LEEYQTAKAALEKGASLA 100 (356)
T ss_pred hCCHHHHHHHHHHHHHhC
Confidence 888888888887777653
No 178
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.17 E-value=0.035 Score=49.59 Aligned_cols=181 Identities=9% Similarity=-0.005 Sum_probs=106.3
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+=..+..+...|++.+|+..|+.+... .|.+- ....+...++.++.+.|+++.|+..+++.++. .|+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~---~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~ 77 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSP---YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc
Confidence 444555667777899999999999999988 44321 13556678888999999999999999999984 443321
Q ss_pred cchhhHHHHHHHHHH----------hhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCC
Q 006303 151 DGSGFKLLKNECQRL----------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~----------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 220 (651)
.. ...+..+.+.+ .+.+...+|+..|+.++... |++.. ..+|......+...
T Consensus 78 ~~--~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y--------------~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 78 AD--YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEY--------------AEEAKKRLAELRNR 139 (203)
T ss_dssp HH--HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTT--------------HHHHHHHHHHHHHH
T ss_pred hh--hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchH--------------HHHHHHHHHHHHHH
Confidence 11 11222222221 22344567777777777654 33322 12222211111000
Q ss_pred -CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhcCCHHHHH
Q 006303 221 -DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSR 276 (651)
Q Consensus 221 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 276 (651)
..--..++..|.+.|.+..|..-++.+.+.-... ...+...++.+|.+.|..+.+.
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 0112236788999999999999999998853221 1345677788888888877443
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.095 Score=49.90 Aligned_cols=272 Identities=14% Similarity=0.072 Sum_probs=158.5
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+.++.+|..|+..+....+. .|+...+ +-+.+..+...|++++|.--.+.-+. +.+..........+++.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~--~pd~a~y------y~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDM--CPDNASY------YSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHh--Cccchhh------hchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhh
Confidence 45777888889888888874 4544221 22222233346777877766655443 23444455555666666
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CcHHhHHHHH-HHHHhcCCHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTII-DVCGICGDYMKSRAIYE 280 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~-~~~~~~g~~~~a~~~~~ 280 (651)
..++..+|.+.++.- .++ ....++..++.+...... |.-..|..+- .++...|++++|.+.-.
T Consensus 129 a~~~~i~A~~~~~~~----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSK----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred hhHHHHHHHHHhhhh----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 667766666665411 111 122233333333322221 2223333332 33455577777776665
Q ss_pred HHHhCCCcccHHHHHHHHHh----hcCChHHHHHHHHHHHHCCCCCCHHhH-------------HHHHHHHHhcCCHHHH
Q 006303 281 DLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADMASY-------------NILLKACCLAGNTVLA 343 (651)
Q Consensus 281 ~~~~~g~~~~~~~~~~ll~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~-------------~~ll~~~~~~g~~~~a 343 (651)
..++... ...+..+++. +..+.+.+..-|++-+..+ |+...- ..-.+-..+.|.+..|
T Consensus 194 ~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 194 DILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 5554321 1222222332 3356666777776666543 332221 1122334578999999
Q ss_pred HHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 006303 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT--WSSLINACANAGLVEQAMHLF 421 (651)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~ 421 (651)
.+.|.+...+.... ..++...|........+.|+.++|+.-.+.....+ +... |..-..++...+++++|.+-|
T Consensus 269 ~E~Yteal~idP~n-~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 269 YECYTEALNIDPSN-KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHhhcCCccc-cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998865443 56777788888888899999999999888887642 2222 233334566678899999999
Q ss_pred HHHHHcC
Q 006303 422 EEMLQAG 428 (651)
Q Consensus 422 ~~~~~~~ 428 (651)
+...+..
T Consensus 345 ~~a~q~~ 351 (486)
T KOG0550|consen 345 EKAMQLE 351 (486)
T ss_pred HHHHhhc
Confidence 9887764
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.12 E-value=0.031 Score=48.49 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=62.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
...+..+...+...|++++|...|++....... .+ ....+..+...+.+.|++++|...+++...... -+...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHH
Confidence 446677777888889999999999888763211 11 135678888888899999999999988887532 2456666
Q ss_pred HHHHHHHhcCC
Q 006303 403 SLINACANAGL 413 (651)
Q Consensus 403 ~ll~~~~~~g~ 413 (651)
.+...+...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 77777777665
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.0032 Score=57.03 Aligned_cols=81 Identities=9% Similarity=-0.014 Sum_probs=50.3
Q ss_pred hcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHH
Q 006303 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (651)
Q Consensus 167 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~ 242 (651)
+.+++.+|+..|.+.++.. |++.+++..-..+|++.|.++.|++-.+.. |....+|..|..+|...|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3688888888888888744 666666666666666666666665544432 2223555555666666666666666
Q ss_pred HHHHHHh
Q 006303 243 AYDASKK 249 (651)
Q Consensus 243 ~~~~~~~ 249 (651)
.|++.++
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 6555555
No 182
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.09 E-value=0.056 Score=46.87 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (651)
...+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577777888889999999999998886543322 3577888888899999999999999888763 33455666666
Q ss_pred HHHHhcCChhHHH
Q 006303 441 QACVEACQFDRAF 453 (651)
Q Consensus 441 ~~~~~~g~~~~a~ 453 (651)
.+|...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6777766655443
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.01 E-value=0.045 Score=47.27 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
.|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...+++..... +.....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34445555555566666666666555432111 12355556666666666666666666665542 2223344444444
Q ss_pred HH-------hcCChhHHHHHHH
Q 006303 443 CV-------EACQFDRAFRLFR 457 (651)
Q Consensus 443 ~~-------~~g~~~~a~~~~~ 457 (651)
+. +.|+++.|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 44 5556555544443
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.99 E-value=0.024 Score=48.99 Aligned_cols=98 Identities=16% Similarity=0.056 Sum_probs=69.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
...|..+...+...|++++|...|+....+... ......++..+...+...|++++|+..+++..... +....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 456677777888889999999999988764210 01123478888889999999999999999988753 223455666
Q ss_pred HHHHHH-------hcCCHHHHHHHHHHH
Q 006303 404 LINACA-------NAGLVEQAMHLFEEM 424 (651)
Q Consensus 404 ll~~~~-------~~g~~~~a~~~~~~~ 424 (651)
+...+. ..|+++.|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 777877666665544
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=96.98 E-value=0.012 Score=48.73 Aligned_cols=93 Identities=10% Similarity=0.055 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHH
Q 006303 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~ 230 (651)
++.+-.....+-+.|++++|..+|.-+...+ +.+...|..|+.++...+++++|...|... +.++........+
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 3333333444555799999999999888754 666677888888888888888888776653 5566777777788
Q ss_pred HhhcCCHHHHHHHHHHHHh
Q 006303 231 FGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~ 249 (651)
|...|+.+.|+..|+...+
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 8888888888888877766
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.98 E-value=0.055 Score=55.66 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
.++..|..+.-.+...|++++|...+++... +.|+...|..+...+...|+.++|.+.+++.....
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAID------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3556677666666667888888888888887 45777888888888888888888888888888764
No 187
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.063 Score=47.19 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=59.4
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc----CCC
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL----GVA 145 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~----~~~ 145 (651)
....|.....+|....++++|..-+....+-... .-+.++...++...+...-....+.+|..++++.... | .
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEn--nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-s 106 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN--NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-S 106 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-C
Confidence 4678888899999999999999988777643111 1112223445555555555666677777777665543 2 2
Q ss_pred ccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 006303 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE 182 (651)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 182 (651)
|+. -..-+.-........++++|+.+|++..
T Consensus 107 pdt------AAmaleKAak~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 107 PDT------AAMALEKAAKALENVKPDDALQLYQRAL 137 (308)
T ss_pred cch------HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 221 1112222333344556666666666543
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.97 E-value=0.021 Score=45.32 Aligned_cols=98 Identities=13% Similarity=0.061 Sum_probs=69.8
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhh
Q 006303 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (651)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 155 (651)
.+...+-..|+.++|+.+|++.+..|..... ...++..+.+.+...|++++|+.+|++.... .|+......+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l- 77 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAAL- 77 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHH-
Confidence 4556677789999999999999998765442 2456667889999999999999999999874 3442222112
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 156 KLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
..+.. ..+...|+.++|++.+-..+.
T Consensus 78 ~~f~A--l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLA--LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHH--HHHHHCCCHHHHHHHHHHHHH
Confidence 22211 234457999999998876554
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.94 E-value=0.004 Score=44.24 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=55.8
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhc-ChhHHHHHHHHHHHc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~l~~~~~~ 142 (651)
...+..++..+...|++++|+..|++.++. .|+. ..++..++..+...| ++++|+..+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567888999999999999999999999998 7773 556677788899999 799999999998873
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.93 E-value=0.32 Score=44.70 Aligned_cols=58 Identities=7% Similarity=-0.003 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMKHY--QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
.+.+-|.+.|.+..|..-++.+.+. +.+........++.++...|..++|.+..+++.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455677788888888878777742 333444566677778888888888777666553
No 191
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.014 Score=52.94 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=69.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 412 (651)
-+.+.+++++|+..|.+...+ .+-|.+.|..=..+|++.|.++.|++-.+..+..+. --..+|..|..+|...|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccC
Confidence 345677888888888888774 244556666777888888888888887777776532 24567888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 413 LVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
++++|++.|++.++. .|+-.+|-.
T Consensus 164 k~~~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhcc--CCCcHHHHH
Confidence 888888888877764 566555543
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.88 E-value=0.1 Score=53.79 Aligned_cols=75 Identities=15% Similarity=0.041 Sum_probs=62.8
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (651)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 624 (651)
.+...|.++.-.+...|++++|...++++.+. .|+...|..+...|...|+.++|...+++... +.|...||...
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~~~ 492 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLYWI 492 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 45677887777777789999999999999995 47889999999999999999999999999875 46777776443
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.86 E-value=0.0055 Score=43.35 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=46.8
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
.+.|++++|++.|+.+.+... -+..++..+..+|.+.|++++|.++++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 457889999999999887532 26777888889999999999999999988876 3444444443
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.82 E-value=0.5 Score=45.25 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=33.1
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHh
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~ 232 (651)
.....|+.+-|..+++. .|. ...-+..+...|+.+.|+.---.-.+.+-+|..|+..-.
T Consensus 9 ~A~~~GR~~LA~~LL~~------Ep~----~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~ 67 (319)
T PF04840_consen 9 KAYEEGRPKLATKLLEL------EPR----ASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKR 67 (319)
T ss_pred HHHHcChHHHHHHHHHc------CCC----hHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 44457888888887653 121 223455566677777776544444444455555555433
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.75 E-value=0.0065 Score=42.95 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 391 (651)
+.|++++|+++|+.+... .+-+...+..+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555554442 122344444455555555555555555555444
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.74 E-value=0.009 Score=41.77 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
..+.+.|++++|...|+++++.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555555555543 114445555555555555555555555555443
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.71 E-value=0.0048 Score=45.14 Aligned_cols=68 Identities=15% Similarity=0.038 Sum_probs=54.9
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhc--CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
...+..++..+...|++++|+..|++.++.. ..++ ......++.+++..+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD---HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999998762 1222 222366778999999999999999999998875
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.04 Score=50.42 Aligned_cols=113 Identities=9% Similarity=-0.047 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhc---CCHHHHHHH
Q 006303 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKK---RDLVSALRA 243 (651)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~---g~~~~a~~~ 243 (651)
.+..+.-++.-+..+ |.+...|..|+..|...|+.+.|...|.. .|+++..+..+.+++..+ ....++..+
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 334444444444433 77777788888888888888888776655 366666666666655443 345567777
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 286 (651)
|++++..+. -|+.+...|...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777776422 356666666777777788888888888777663
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.68 E-value=0.21 Score=47.52 Aligned_cols=300 Identities=14% Similarity=-0.005 Sum_probs=149.7
Q ss_pred HHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc----CCCcc-ccccc
Q 006303 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL----GVAPL-ELFDG 152 (651)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~----~~~~~-~~~~~ 152 (651)
..-+++.|+.+.-+..|+..++.|.+-- . ....++..+..+|.-.++|.+|++.-..=+.. |-+.- .-...
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl--~--tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDL--S--TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHH--H--HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 4667899999999999999999876522 1 23556677888899999999998764432110 10000 00000
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHH----hcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHH
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~ 228 (651)
.+-+++ .-.|.+++|+....+-+ +.|...-..-++..++..|...|+.-. ...|.+...++.=+
T Consensus 100 NLGNtl-------Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-----~~~pee~g~f~~ev 167 (639)
T KOG1130|consen 100 NLGNTL-------KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-----LEAPEEKGAFNAEV 167 (639)
T ss_pred cccchh-------hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-----CCChhhcccccHHH
Confidence 111111 11466777765543322 111111111112222222222211100 00010001111000
Q ss_pred HHHhhcCCHHHHHHHHHHHHh----cCCC-CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC
Q 006303 229 REFGKKRDLVSALRAYDASKK----HLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 303 (651)
...++.|.+.|.+=++ .|-. .-..+|..|.+.|.-.|+++.|+...+.-+..
T Consensus 168 -----~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i------------------ 224 (639)
T KOG1130|consen 168 -----TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI------------------ 224 (639)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH------------------
Confidence 0112233333332111 1100 11234555666666667777776655443211
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh-cCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
|.++=++.. ....+..|.+++.-.|+++.|.+.|+....+.. -|.-.........|.+.|.-..+++.|
T Consensus 225 ----a~efGDrAa------eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kA 294 (639)
T KOG1130|consen 225 ----AQEFGDRAA------ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKA 294 (639)
T ss_pred ----HHHhhhHHH------HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 111111111 233566677778888888888888876544321 121123344566677777777888888
Q ss_pred HHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 383 LKVKEDMLSA-----GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 383 ~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
+.++.+-+.. ...-....+-.|..+|...|..++|+.+.+...+
T Consensus 295 I~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 295 ITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 8776553321 1122455677788888888888888877766554
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.65 E-value=0.04 Score=46.24 Aligned_cols=123 Identities=15% Similarity=0.073 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcC--CCcccc--chHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--LPVKEL--DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
|..++.........++.+.++..++++.... ....+. ..|..-.... +... -..+...++..
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~------------l~~~--~~~~~~~l~~~ 71 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERER------------LREL--YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHH------------HHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHH------------HHHH--HHHHHHHHHHH
Confidence 3334443334444678888888888877542 111111 1122111111 1000 01345567778
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCcccHH
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIY 292 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~ 292 (651)
+...|+++.|.+..+.+....+ -+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 8889999999999999998532 3788999999999999999999999998754 25555543
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.63 E-value=0.23 Score=41.81 Aligned_cols=133 Identities=14% Similarity=0.072 Sum_probs=100.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CCHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PNTI 399 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~ 399 (651)
.|+...--.|..++.+.|+..+|...|++.. .|.+..|....-.+.++....+++.+|...++.+.+.... .+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 4666666778899999999999999999987 4767778888889999999999999999999998876311 1223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
+...+.+.+...|++.+|...|+..... -|+...-...-..+.+.|+.+++..-+..+
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4556778889999999999999999876 455554444445566778776665444433
No 202
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.62 E-value=0.65 Score=43.89 Aligned_cols=59 Identities=8% Similarity=-0.040 Sum_probs=44.8
Q ss_pred hccCChHHHHHHHHHHHHhc--CChhHHHhhhhHHHHHhHHHHhhhhc-ChhHHHHHHHHHHHc
Q 006303 82 AKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~l~~~~~~ 142 (651)
.++|+++.|..++.++.... ..|+.... ....+.+++......+ +++.|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~--La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEE--LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHH--HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46899999999999886643 35554433 4556677777788888 999999999998774
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.60 E-value=0.08 Score=42.53 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 006303 547 NHISWTILIDACGGSGNVEGALQILKIMRE---------------DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK- 610 (651)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 610 (651)
|..++.++|.++++.|+++....+++..=. ..+.|+..+..+++.+|+..|++..|+++++...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788889999999999888888876421 1356889999999999999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC
Q 006303 611 HYQIQPNLVTYITLLRARSRYG 632 (651)
Q Consensus 611 ~~g~~p~~~~~~~l~~~~~~~g 632 (651)
..+++.+..+|..|++=+...-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 6788889999999998554433
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.59 E-value=0.071 Score=52.13 Aligned_cols=71 Identities=10% Similarity=0.024 Sum_probs=60.0
Q ss_pred CCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 66 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
+|+. ...+..+..+|...|++++|+..|++.++. .|+.... ..++++++..|...|+.++|++.|++.++.
T Consensus 71 dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA---~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKT-AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEA---QAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555 889999999999999999999999999998 6663211 134788899999999999999999999984
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.59 E-value=0.017 Score=40.97 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=31.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc-CHHHHHHHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDML 390 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~ 390 (651)
+..|..+...+...|++++|+..|++..+. .+.+...|..+..+|...| ++++|+..+++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344555555555555555555555555542 1223344555555555555 4555555555444
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.58 E-value=0.72 Score=43.88 Aligned_cols=243 Identities=14% Similarity=0.053 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhh----hCCCCCccHHHHHHHHhhcCCHHHHHHHH
Q 006303 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC----IVPRADILFCNFVREFGKKRDLVSALRAY 244 (651)
Q Consensus 169 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 244 (651)
|++++|.+-|+.|.... ......+..|.-.-.+.|..+.|.++-+ ..|.-..++..++...|..|+++.|+++.
T Consensus 134 G~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 134 GDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred CchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 66666666666654311 1111112222222234555555555433 34555566666777777777777777777
Q ss_pred HHHHhcC-CCCcHH--hHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh----hcCChHHHHHHHHH
Q 006303 245 DASKKHL-SSPNMY--ICRTIIDVCGI---CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKN 314 (651)
Q Consensus 245 ~~~~~~~-~~~~~~--~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~----~~~~~~~a~~~~~~ 314 (651)
+.-.+.. +.++.. .-..|+.+-.. .-+...|.+.-.+..+. .||..-- .++.+ ..|+..++-.+++.
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPa-av~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPA-AVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchH-HHHHHHHHHhccchhhhhhHHHH
Confidence 6544332 223322 22233322111 12344444443333322 3332221 11111 22566666677777
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
+-+.. |.+..+. +..+.+.|+ .+..-++...++.. ++| +....-.+..+....|++..|..--+...+.
T Consensus 289 aWK~e--PHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~s---lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 289 AWKAE--PHPDIAL--LYVRARSGD--TALDRLKRAKKLES---LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred HHhcC--CChHHHH--HHHHhcCCC--cHHHHHHHHHHHHh---cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 76653 3333332 222334443 23333333333221 223 3445556666777777777776666655543
Q ss_pred CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 006303 394 VTPNTITWSSLINACAN-AGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 394 ~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~ 427 (651)
.|....|..|.+.-.. .|+-+++...+.+..+.
T Consensus 359 -~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 -APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5666666666665443 37777777777776654
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.52 E-value=0.091 Score=44.09 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCC 436 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 436 (651)
....++..+...|++++|.++++.+.... +-|...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456667778899999999999988764 34788899999999999999999999888754 4788877654
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.46 E-value=1.3 Score=45.49 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=33.6
Q ss_pred cccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 424 (651)
+-+....-.|..++.+.|.-++|.+.|-+-- . |- .-+..|...+++.+|.++-+..
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566667777777777777777664321 1 11 2345566667777776665543
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.22 Score=45.77 Aligned_cols=102 Identities=16% Similarity=0.062 Sum_probs=83.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHCCCCCC
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA---KWWQMALKVKEDMLSAGVTPN 397 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~~~ 397 (651)
+-|...|-.|...|...|+.+.|..-|.+..++ .+++...+..+..++... .+..++.++|++++..+. -|
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~ 226 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-AN 226 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-cc
Confidence 457889999999999999999999999999986 345666666666665443 356788999999998753 37
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
..+...|...+...|++.+|...|+.|.+..
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7888888889999999999999999999875
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.35 E-value=0.46 Score=42.45 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=44.2
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
......+..+...|++.+|++.|+.+....... -..+.-.++.++-+.|+++.|...++++.+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455667778888888888888888754321 2345666777888888888888888887765
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.30 E-value=0.016 Score=42.27 Aligned_cols=71 Identities=13% Similarity=-0.001 Sum_probs=50.7
Q ss_pred hHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 112 SLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
...++..++..|...|++++|+..|++..+. ..........+...+.+....+...|++++|++.+++..+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566788899999999999999999999875 1111111223455566666677778999999999888654
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=1.2 Score=42.90 Aligned_cols=260 Identities=10% Similarity=-0.047 Sum_probs=156.7
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
..++..|+..+....... |++...|..-...+...+++++|.--.+.. +...........++...++..+|.+.
T Consensus 62 ~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 577888888888887755 778888888888888888887776543322 22223333344455555555555555
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHH---hhcCChHHHHHHHHHHHHCC
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMN---VNAHDLKFTLEVYKNMQKLG 319 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~---~~~~~~~~a~~~~~~m~~~~ 319 (651)
++. ...+ ....++..++........ |.-.+|..+=. ...++.+.|.+.--...+..
T Consensus 140 ~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 140 LKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred hhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 441 1111 112223333333322222 33333332222 13377888877766666542
Q ss_pred CCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH---HH----------HHHHHHcccCHHHHHH
Q 006303 320 VMADMASYNILLK--ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY---ST----------IVKVFADAKWWQMALK 384 (651)
Q Consensus 320 ~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~----------l~~~~~~~~~~~~a~~ 384 (651)
..+ .+..+++ ++.-.++.+.+...|++...+ .|+...- .. =..-..+.|++..|.+
T Consensus 200 -~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~l------dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 200 -ATN--AEALYVRGLCLYYNDNADKAINHFQQALRL------DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred -cch--hHHHHhcccccccccchHHHHHHHhhhhcc------ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 112 2333333 344567889999999988763 3443321 11 1234467899999999
Q ss_pred HHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-H--HHHHHHHHHhcCChhHHHHHHHH
Q 006303 385 VKEDMLSAG---VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-C--CNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 385 ~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~--~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
.|.+.+... ..++...|........+.|+..+|+.--+...+. |.. . |..-..++.-.++|++|.+-|++
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988653 4566777888888888999999999988888754 332 2 22333456667889999999988
Q ss_pred hhhc
Q 006303 459 WTLS 462 (651)
Q Consensus 459 ~~~~ 462 (651)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 7654
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.24 E-value=0.1 Score=48.39 Aligned_cols=97 Identities=7% Similarity=-0.072 Sum_probs=65.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH----HHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--CCCH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGV--TPNT 398 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~ 398 (651)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+...-. ....
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 34555555555668888888888888763 2332 3566677778888888888888888875421 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 399 ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
..+..+..++...|+.+.|..+|+.+.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666777788888888888887766
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.96 Score=40.59 Aligned_cols=130 Identities=8% Similarity=0.077 Sum_probs=71.3
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh-
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~- 300 (651)
.+.+.++..+.-.+.+.-....+.++.+...+.++.....|++.-...||.+.|...|++..+..-+.|..+++.+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4455566666667777777777777777665556777777777777778888887777766544333333333322221
Q ss_pred ----h--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 301 ----N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 301 ----~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+ ++++..+...+++..... +.|+...|.-.-+..-.|+..+|.+..+.+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 134444555555444432 12333333322233334555555555555554
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.12 E-value=0.71 Score=39.04 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=23.2
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
.|+...--.|..++.+.|++.+|...|++...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals 117 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS 117 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc
Confidence 46666666677777788888888888877654
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.97 Score=40.56 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ--- 441 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--- 441 (651)
..+.++..+.-.|.+.-...++++..+...+-+......|++.-.+.||.+.|..+|++..+..-..+..+.+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566677777788888888888888776666777788888888888888888888887766533344434433332
Q ss_pred --HHHhcCChhHHHHHHHHhh
Q 006303 442 --ACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 442 --~~~~~g~~~~a~~~~~~~~ 460 (651)
.|.-.+++..|...+.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred hhheecccchHHHHHHHhhcc
Confidence 3444556666666665544
No 217
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.98 E-value=0.088 Score=47.33 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHhh-------cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH
Q 006303 512 KPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~-------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 584 (651)
+.|-.+|-..+..+.. +.+-....++.|.+.|+.-|..+|+.|++.+=+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 4455556555555542 456666677788888888888888888876644321 1111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 633 (651)
.+-.....|-++ -+-+++++++|...|+.||..+-..+++++.+.|-
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111122222222 23467777888888888888888888888777665
No 218
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.91 E-value=0.97 Score=42.79 Aligned_cols=139 Identities=12% Similarity=0.241 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhcc
Q 006303 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE--A----CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (651)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (651)
+++...+++.|.+.|++-+..+|-+..-.... . ....++..+|+.|++.....+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 44566777888888887777666553333222 1 234578889999987754322
Q ss_pred ccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhc----HHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhcC
Q 006303 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHI--SWTILIDACGGS 561 (651)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~a~~~~~~~~~~~~~p~~~--~~~~li~~~~~~ 561 (651)
.++...+..++..-..+ .+.++.+|+.+.+.|+..+.. ..+.++..+...
T Consensus 138 ------------------------s~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~ 193 (297)
T PF13170_consen 138 ------------------------SPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGD 193 (297)
T ss_pred ------------------------CccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcccc
Confidence 56677777777775543 467888999999988876443 333433333222
Q ss_pred CC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 562 GN--VEGALQILKIMREDGMSPDVVAYTTAIKVCVRS 596 (651)
Q Consensus 562 g~--~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 596 (651)
.. ...+.++++.+.+.|+++....|..+.-...-.
T Consensus 194 ~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~ 230 (297)
T PF13170_consen 194 DQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLE 230 (297)
T ss_pred chHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcC
Confidence 22 457888999999999999888887665544333
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.85 E-value=0.073 Score=38.14 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=26.5
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
.|.+.+++++|.++++.+...+.. +...+.....++.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344455555555555555544321 3444444445555555555555555555443
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.80 E-value=0.07 Score=38.24 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=46.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
-..|.+.+++++|.++++.+..+ .+.+...|.....++.+.|++++|...|+...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-----DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 35677888999999999988874 24466677888888889999999999998888764
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.28 Score=48.12 Aligned_cols=66 Identities=12% Similarity=-0.059 Sum_probs=58.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH----HHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
+.+...++.+..+|.+.|++++|+..|++..+ +.|+. .+|..+..+|...|++++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44678899999999999999999999999988 45664 35899999999999999999999999875
No 222
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.71 E-value=1.9 Score=40.74 Aligned_cols=177 Identities=10% Similarity=-0.013 Sum_probs=99.6
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcc-hHHHHHHHHHHHHhc----CC-CccccchHHH
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEF----RL-PVKELDEEFR 196 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~~~~~----~~-~~~~~~~~~~ 196 (651)
..++|+.+.|..++.+........++.....+-..+.+........+ +++.|...+++..+. +. .........
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e- 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE- 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH-
Confidence 46899999999999998875322223323344455555555566677 888888888876542 10 000000000
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHH---HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV---SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
+ ...+...|+.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+
T Consensus 82 --------------l--------r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~ 138 (278)
T PF08631_consen 82 --------------L--------RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEE 138 (278)
T ss_pred --------------H--------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChh
Confidence 0 0134555677777766654 455555566443221 2444545566667788899
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHhh---c-CChHHHHHHHHHHHHCCCCCCH
Q 006303 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVN---A-HDLKFTLEVYKNMQKLGVMADM 324 (651)
Q Consensus 274 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~---~-~~~~~a~~~~~~m~~~~~~~~~ 324 (651)
++.+.+.+|...-.. ....+..++... . .....+...++.+....+.|..
T Consensus 139 ~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 139 EYEEILMRMIRSVDH-SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 999999998876221 223333333332 2 3556666666666554444443
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.66 E-value=0.17 Score=40.66 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=56.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
|..++..+|.++++.|+++....+++..=.....|....+. .-......|+..+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~------------------------~~~~spl~Pt~~lL~ 56 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD------------------------YPPSSPLYPTSRLLI 56 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc------------------------cCCCCCCCCCHHHHH
Confidence 34566677777777777777766665443221111100000 011233566777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQACV 444 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~ 444 (651)
+++.+|+..|++..|+++++...+. +++.+..+|..|++-+.
T Consensus 57 AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 57 AIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777777777766553 45555666777766443
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=95.51 E-value=0.16 Score=42.32 Aligned_cols=88 Identities=10% Similarity=-0.136 Sum_probs=67.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 412 (651)
-+...|++++|..+|+-+... -.-+..-|..|..++-..+++++|...|......+. -|...+-....++...|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 345678999999999888763 134555677778888888889999988887776553 35555667788888889
Q ss_pred CHHHHHHHHHHHHH
Q 006303 413 LVEQAMHLFEEMLQ 426 (651)
Q Consensus 413 ~~~~a~~~~~~~~~ 426 (651)
+.+.|...|.....
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999998888876
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.39 E-value=3 Score=40.84 Aligned_cols=428 Identities=10% Similarity=0.042 Sum_probs=198.1
Q ss_pred HhcCCChHHHHHHhhhCCC----CC------ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH--HHh
Q 006303 201 CVNKPDVNLAIRYACIVPR----AD------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV--CGI 268 (651)
Q Consensus 201 ~~~~~~~~~A~~~~~~~~~----~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 268 (651)
+.+++++.+|.++|.++-+ ++ .....++++|.. ++.+.....+.+..+.. | ...|-.+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 4467888888888777632 11 222335555554 45566555555555431 2 1223333222 346
Q ss_pred cCCHHHHHHHHHHHHhC--CCcc---cHH--------HH-HHHHHh--hcCChHHHHHHHHHHHHCC----CCCCHHhHH
Q 006303 269 CGDYMKSRAIYEDLRSQ--NVTL---NIY--------VF-NSLMNV--NAHDLKFTLEVYKNMQKLG----VMADMASYN 328 (651)
Q Consensus 269 ~g~~~~a~~~~~~~~~~--g~~~---~~~--------~~-~~ll~~--~~~~~~~a~~~~~~m~~~~----~~~~~~~~~ 328 (651)
.+++..|.+.+..-.+. +..+ |.. .+ +....+ -.|.+.++..+++++...= ..-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 67788888877765544 2221 111 11 111111 1267777777777765532 336777777
Q ss_pred HHHHHHHhcCCH---------------HHHHHHHHHHHHhhhc--CCccccHHHHHHHHHHHHcc--cCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNT---------------VLAQEIYGEVKHLEAK--GVLKLDVFTYSTIVKVFADA--KWWQMALKVKEDM 389 (651)
Q Consensus 329 ~ll~~~~~~g~~---------------~~a~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m 389 (651)
.++-.+.+.=-+ +.+.-..+++...... ..+-|-......++....-. .+..--+++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 777777653111 1111111111110000 00112222222222211110 1111112222222
Q ss_pred HHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhccc
Q 006303 390 LSAGVTPNTI-TWSSLINACANAGLVEQAMHLFEEMLQAGCE----PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (651)
Q Consensus 390 ~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 464 (651)
...-+.|+.. ....+...+.+ +.+++..+.+.+....+. --..+|..++....+.++...|.+.+.-+....+
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 2222333322 22333444443 455655555554433211 1234678888888888998888888876665554
Q ss_pred ccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCH-HHHHHHHHHHh------hcHHHHHHHHH
Q 006303 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNILMKACC------TDYYRVKALMN 537 (651)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~------~~~~~a~~~~~ 537 (651)
...++.........+..+...+....+.....+. +-+.... ...|. ..-..++.+-- +.-++|..+++
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~---lwe~~qs--~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN---LWEEIQS--YDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH---HHHHHHh--hcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4333322211111222221111111000000000 0000000 00110 01111111110 12456777777
Q ss_pred HHHHcCCCC-cHHHHHHHH----HHHhc---CCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHhcCCHHHHH
Q 006303 538 EMRTVGLSP-NHISWTILI----DACGG---SGNVEGALQILKIMREDGMSP----DVVAYTTAIKV--CVRSKRLKQAF 603 (651)
Q Consensus 538 ~~~~~~~~p-~~~~~~~li----~~~~~---~g~~~~A~~~~~~~~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~ 603 (651)
.+.+ +.| |...-|.+. ..|.. ...+..-..+-+-+.+.|+.| +...-|.|.+| +..+|++.++.
T Consensus 405 ~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 405 LILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 7665 233 333322222 23322 122334444444445567766 34455666665 56789999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643 (651)
Q Consensus 604 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 643 (651)
-+-..+. .+.|+..+|..+.-++....++++|..++..
T Consensus 483 ~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 483 LYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 8777776 3789999999999999999999998876553
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.29 E-value=1.4 Score=44.78 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHH-----------HHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT-----------YSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
.++......++|.+|..+-+...+ +.+|+.. |...-.+|.+.|+-.+|.++++++-..
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe------~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPE------FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcc------ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 355666666777777776666554 3333321 122234556667777777777776543
No 227
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.28 E-value=1.6 Score=41.27 Aligned_cols=232 Identities=8% Similarity=-0.017 Sum_probs=110.5
Q ss_pred hccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc--CCCccccccchhhHHHH
Q 006303 82 AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL--GVAPLELFDGSGFKLLK 159 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~l~ 159 (651)
....+.++|+....+.+.. --+.+. .+..+..+..+..+.|++++++..--..++. ..+.. ...+..++
T Consensus 17 y~s~~~~~al~~w~~~L~~--l~~~~~---Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds----~~~~ea~l 87 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEK--LSDLMG---RFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS----DFLLEAYL 87 (518)
T ss_pred hcCchHHHHHHHHHHHHHH--HHHHHH---HHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3466777888877776654 222222 2455667777888899888766543322221 11111 11333344
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHhc-CCCc--cccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCC
Q 006303 160 NECQRLLDSGEVEMFVGLMEVLEEF-RLPV--KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (651)
Q Consensus 160 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~ 236 (651)
+....+.+.-++.+++.+-+.-... |..+ +.. .+..++..++.-.+.
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g------------------------------q~~l~~~~Ahlgls~ 137 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG------------------------------QVSLSMGNAHLGLSV 137 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc------------------------------hhhhhHHHHhhhHHH
Confidence 4333333333344444443332221 1111 111 222334445555555
Q ss_pred HHHHHHHHHHHHhcCC-----CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCcccHHHHHHHHHh-------
Q 006303 237 LVSALRAYDASKKHLS-----SPNMYICRTIIDVCGICGDYMKSRAIYEDLRS----QNVTLNIYVFNSLMNV------- 300 (651)
Q Consensus 237 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~g~~~~~~~~~~ll~~------- 300 (651)
++++++.|+...+.-. -....++-.|...|.+..|+++|.-...+..+ -++..-..-|..+...
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR 217 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR 217 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH
Confidence 5555555555443211 01234555666666666666655444333322 1222111222222110
Q ss_pred hcCChHHHHHHHHHH----HHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 301 NAHDLKFTLEVYKNM----QKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m----~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
..|.+.+|.+.-++. ...|-.+ .......+.+.|...|+.+.|+.-|++...
T Consensus 218 ~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 218 LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 124444454444443 3334222 234455677888899999998888877654
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.16 E-value=0.42 Score=37.64 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=62.2
Q ss_pred HHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHh---HHHHHHHHHhcCCH
Q 006303 200 LCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI---CRTIIDVCGICGDY 272 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~ 272 (651)
+..+.|+.+.|++.|.+ .|....+||+-..++.-+|+.++|+.-+++.++-.-...... |-.-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 44556666666666554 377788999999999999999999999888877422222222 33334457778899
Q ss_pred HHHHHHHHHHHhCCC
Q 006303 273 MKSRAIYEDLRSQNV 287 (651)
Q Consensus 273 ~~a~~~~~~~~~~g~ 287 (651)
+.|..-|+..-+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999988888877664
No 229
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.15 E-value=1.7 Score=36.72 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 006303 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (651)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~ 320 (651)
.+....+.+.++.|+...+..+++.+.+.|++ ..+..+...++-+|.......+-...+....+.++=-+|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH--
Confidence 34455666778888999999999999999987 444555566666666555555544444333333333333221
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEV 350 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 350 (651)
=...+..++..+...|++-+|.++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012445566666777777777776654
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=0.27 Score=44.58 Aligned_cols=102 Identities=9% Similarity=-0.031 Sum_probs=79.8
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 152 (651)
.|+.-+..+ ..|++.+|++.|...++.. |++.- ..+++.+++..+..+|++++|...|..+.+. .|+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~~---~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~--- 212 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNSTY---TPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSP--- 212 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCcc---cchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCC---
Confidence 666666555 5688999999999999984 43211 3677889999999999999999999999984 33222
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 185 (651)
-.-+.+++......+.|+.++|...|+++.+..
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 234567777778888999999999999998865
No 231
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.13 E-value=0.75 Score=38.38 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=31.3
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (651)
.+.+.+..++|+..|..+.+.|-..-.............+.|+...|...|+.+
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 344568888999988888776643333333333344444555555555555543
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.12 E-value=3.5 Score=40.10 Aligned_cols=162 Identities=16% Similarity=0.118 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC---Cc--ccH-HHHHHHHHh--hcCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 006303 260 RTIIDVCGICGDYMKSRAIYEDLRSQN---VT--LNI-YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331 (651)
Q Consensus 260 ~~l~~~~~~~g~~~~a~~~~~~~~~~g---~~--~~~-~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 331 (651)
..++-.|....+|+..+++++.+.... +. +.+ +.|...++- ..|+.++|++++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445777777777777777776541 00 111 111111111 1367777777777755555566777777776
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccC-H---HHHHHHH---H-HHHHCC-
Q 006303 332 KACCL---------AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW-W---QMALKVK---E-DMLSAG- 393 (651)
Q Consensus 332 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~---~~a~~~~---~-~m~~~~- 393 (651)
+.|-. ...++.|+..|.+.-+ +.+|...--.++..+...|. + .+..++- . .+.+.|
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe------~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE------IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc------CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 66542 1235667777766554 33443332222222222222 1 1222222 1 111222
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 394 --VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 394 --~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
-..+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1234445566667777777777777777777655
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.11 E-value=0.72 Score=46.44 Aligned_cols=161 Identities=9% Similarity=0.071 Sum_probs=101.5
Q ss_pred HHHHhhhccCChHHHHHHHH--HHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccch
Q 006303 76 DMASKLAKDGRLEEFAMIVE--SVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (651)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~ 153 (651)
...+...-+|+++++.++.+ .++. .+.+ +..+.+++-+-+.|..+.|+.+...-..
T Consensus 266 ~~fk~av~~~d~~~v~~~i~~~~ll~-~i~~---------~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------ 323 (443)
T PF04053_consen 266 LEFKTAVLRGDFEEVLRMIAASNLLP-NIPK---------DQGQSIARFLEKKGYPELALQFVTDPDH------------ 323 (443)
T ss_dssp HHHHHHHHTT-HHH-----HHHHTGG-G--H---------HHHHHHHHHHHHTT-HHHHHHHSS-HHH------------
T ss_pred HHHHHHHHcCChhhhhhhhhhhhhcc-cCCh---------hHHHHHHHHHHHCCCHHHHHhhcCChHH------------
Confidence 33455556788888777664 1111 1121 1224455557788999998887543221
Q ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhh
Q 006303 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (651)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~ 233 (651)
-|++.++ .|+.+.|.+..++ .++...|..|+......|+++.|++.|.+.. -+..|+-.|.-
T Consensus 324 rFeLAl~-------lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d~~~L~lLy~~ 385 (443)
T PF04053_consen 324 RFELALQ-------LGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK----DFSGLLLLYSS 385 (443)
T ss_dssp HHHHHHH-------CT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHH
T ss_pred HhHHHHh-------cCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----CccccHHHHHH
Confidence 4555555 8999999887654 3455679999999999999999999998875 46677778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
.|+.+...++.+.....|. +|....++.-.|+.++..+++.+.
T Consensus 386 ~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 386 TGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp CT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8998888888877776542 455555566678888888887654
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.16 Score=48.63 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=80.5
Q ss_pred HHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHH
Q 006303 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (651)
Q Consensus 120 ~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (651)
...|.+.|++..|...|++++.. -.... .-+.++...... + -...+..+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~~------------------~~~~ee~~~~~~-~--------k~~~~lNlA~ 265 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEYRR------------------SFDEEEQKKAEA-L--------KLACHLNLAA 265 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhccc------------------cCCHHHHHHHHH-H--------HHHHhhHHHH
Confidence 34578999999999999987763 11000 000011111110 0 0122444555
Q ss_pred HHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHH-
Q 006303 200 LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYM- 273 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~- 273 (651)
++.+.+++..|++...+. |.+.-+...-..+|...|+++.|+..|+.+.+ +.| |..+-+.|+.+-.+...+.
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHH
Confidence 666666666666554442 55567777778888888999999999999888 556 4445555655555554444
Q ss_pred HHHHHHHHHHhC
Q 006303 274 KSRAIYEDLRSQ 285 (651)
Q Consensus 274 ~a~~~~~~~~~~ 285 (651)
...++|..|...
T Consensus 344 kekk~y~~mF~k 355 (397)
T KOG0543|consen 344 KEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHhhc
Confidence 446788888654
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.98 Score=43.45 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=89.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcCC----------ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 332 KACCLAGNTVLAQEIYGEVKHLEAKGV----------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
+.|.+.|++..|...|+.+...-.... ...-..+++.+..+|.+.+++..|+....+.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 355666777777666666443211000 01234467788899999999999999999999886 4588888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCh-hHHHHHHHHhhhc
Q 006303 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN-ILLQACVEACQF-DRAFRLFRSWTLS 462 (651)
Q Consensus 402 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~-~~a~~~~~~~~~~ 462 (651)
.--..+|...|+++.|...|+++++. .|+..... .++.+-.+.... +...++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88899999999999999999999987 45545444 444443333333 4457888888654
No 236
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.94 E-value=2 Score=37.54 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=18.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
.+|--|...+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45666666666667777776666665554
No 237
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=5.7 Score=41.57 Aligned_cols=93 Identities=16% Similarity=0.292 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (651)
+..+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-.... .+.-|..++.+|.+.|+.++|.+++-
T Consensus 699 ~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYip 768 (829)
T KOG2280|consen 699 QNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIP 768 (829)
T ss_pred chHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhh
Confidence 4556666655543 3777777777788888888776655543332 25567777888888888888888877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQ 639 (651)
Q Consensus 608 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 639 (651)
+... .. -.+.+|.+.|++.+|.+
T Consensus 769 rv~~--l~-------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 769 RVGG--LQ-------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred ccCC--hH-------HHHHHHHHhccHHHHHH
Confidence 7631 11 35667777777777654
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.82 E-value=0.63 Score=42.15 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (651)
+.++-....++.|.+.|++.|..+|+.|++.+-+..-. |. ..+....--|-++-+-+++++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-nvfQ~~F~HYP~QQ~C~I~vLeq 148 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-NVFQKVFLHYPQQQNCAIKVLEQ 148 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-HHHHHHHhhCchhhhHHHHHHHH
Confidence 55555566666666666666666666666655432211 10 11111111223345668899999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 006303 315 MQKLGVMADMASYNILLKACCLAGN-TVLAQEIYGEVKH 352 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~ 352 (651)
|...|+-||..+-..|++++.+.+- ..+..++.-.|.+
T Consensus 149 ME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 149 MEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 9999999999999999999987765 3444555555554
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=94.76 E-value=2.9 Score=41.47 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=78.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHHhhcCChHHHHHHH
Q 006303 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVY 312 (651)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~ 312 (651)
..+..+|.+.-+...+.+. -|..+...+..+....++++.|...|++....++. ++...|..++..++|+.++|.+.+
T Consensus 317 ~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 317 ELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456677777777777543 46777777777777788899999999988776433 456777888888889999999988
Q ss_pred HHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 313 KNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGE 349 (651)
Q Consensus 313 ~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (651)
++..+.. ...-.......++.|+.. .++.|+++|-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 8865542 111233444455567654 46777777654
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.73 E-value=3.5 Score=42.29 Aligned_cols=175 Identities=12% Similarity=-0.003 Sum_probs=98.7
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhh----hhcChhHHHHHHHHHHHcCCCc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSI----REGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
|..+..++..+.-.|+-+.+++++....+.+.--..+..+.... ++..+..++ .....+.|.++++.+.+ ..|
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~-y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP 264 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLW-YHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYP 264 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHH-HHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCC
Confidence 44566777788888999999999998776532223343333322 223333332 24566778888888887 455
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHH
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (651)
+.. ++ +......+...|+.++|++.|++....... |..+- ...+.-
T Consensus 265 ~s~----lf--l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~------~~Ql~----------------------~l~~~E 310 (468)
T PF10300_consen 265 NSA----LF--LFFEGRLERLKGNLEEAIESFERAIESQSE------WKQLH----------------------HLCYFE 310 (468)
T ss_pred CcH----HH--HHHHHHHHHHhcCHHHHHHHHHHhccchhh------HHhHH----------------------HHHHHH
Confidence 443 22 222223334468888888888865431100 11111 123445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH-HHHhcCCH-------HHHHHHHHHHH
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDY-------MKSRAIYEDLR 283 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~ 283 (651)
++-.+.-.+++++|.+.|..+.+..- -+...|.-+.. ++...|+. ++|.++|.+..
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 66667778888888888888877321 12223333322 23445655 66666666554
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.70 E-value=1.5 Score=34.64 Aligned_cols=91 Identities=19% Similarity=0.052 Sum_probs=64.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT---ITWSSLINACA 409 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~ 409 (651)
++...|+++.|++.|.+...+ .+-....||.-..++--.|+.++|++=+++.++..-..+. ..|..-...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 566778888888888888774 3556778888888888888888888888887764211122 23334444566
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 006303 410 NAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~ 428 (651)
..|+.+.|..-|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888888777665
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.65 E-value=4.8 Score=39.37 Aligned_cols=430 Identities=12% Similarity=0.116 Sum_probs=220.2
Q ss_pred ccccchHHHHHHHHhcCCChHHHHHHhhhCCC----CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 006303 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPR----ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (651)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (651)
|++...|..++..+..++..++-.+.+.++.. -+.+|..-+.+=....++.....+|.+.+... .+...|...+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 77777888888888888888888888777633 23566666666666788888888898888754 3466677666
Q ss_pred HHHHhcCC------HHHHHHHHHHHHh-CCCccc-HHHHHHHHHhhc-----C------ChHHHHHHHHHHHHCCCCCCH
Q 006303 264 DVCGICGD------YMKSRAIYEDLRS-QNVTLN-IYVFNSLMNVNA-----H------DLKFTLEVYKNMQKLGVMADM 324 (651)
Q Consensus 264 ~~~~~~g~------~~~a~~~~~~~~~-~g~~~~-~~~~~~ll~~~~-----~------~~~~a~~~~~~m~~~~~~~~~ 324 (651)
....+... -....+.|+.... .++.|- ...|+....... + +.+.....+.+|....+..=.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 65444331 1122334443333 244432 344554444311 2 344555666666543211001
Q ss_pred HhHH------HHHHHHHh---cC----CHHHHHHHHHHHHHhhhcCCc---cccHHHHHHHHH-----------HHHcc-
Q 006303 325 ASYN------ILLKACCL---AG----NTVLAQEIYGEVKHLEAKGVL---KLDVFTYSTIVK-----------VFADA- 376 (651)
Q Consensus 325 ~~~~------~ll~~~~~---~g----~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~l~~-----------~~~~~- 376 (651)
..|+ .=++.... -| -+-.|...+++...+. +|.- +.+..++|-... -=...
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt-~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLT-RGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHh-ccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 1111 11111100 01 1344555555554432 2210 112223332111 00000
Q ss_pred ----cC-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 006303 377 ----KW-W-QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (651)
Q Consensus 377 ----~~-~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 450 (651)
|+ . +..--++++.... +.-....|-.--..+...++-+.|+.....-... .|+... .+-..|.-.++-+
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~--~lse~yel~nd~e 350 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTM--FLSEYYELVNDEE 350 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchhe--eHHHHHhhcccHH
Confidence 00 0 1111122222211 1112223333333344556666666655543322 343211 1223333344444
Q ss_pred HHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh--c
Q 006303 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--D 528 (651)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~ 528 (651)
.....|++..+.- .........+...... .+..+.....-.....-...|...|....+ .
T Consensus 351 ~v~~~fdk~~q~L---------------~r~ys~~~s~~~s~~D---~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~G 412 (660)
T COG5107 351 AVYGCFDKCTQDL---------------KRKYSMGESESASKVD---NNFEYSKELLLKRINKLTFVFCVHLNYVLRKRG 412 (660)
T ss_pred HHhhhHHHHHHHH---------------HHHHhhhhhhhhcccc---CCccccHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 4444444332210 0000000000000000 000000000000112334556666666554 6
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVG-LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY-TTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~ 606 (651)
.+.|..+|-+..+.| +.++..+++++|..++ .|+...|..+|+.-... -||...| +-.+.-+.+-++-+.|..+|
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 788999999999998 6788999999999776 57888999999876654 3555544 46777788899999999999
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006303 607 EEMKHYQIQPN--LVTYITLLRARSRYGSLHEVQQCLAVYQDM 647 (651)
Q Consensus 607 ~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m 647 (651)
+..... +.-+ ...|..+|.-=...|+...+..+-+.|.+.
T Consensus 490 etsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 490 ETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 966532 3333 578999999999999987776655555443
No 243
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.51 E-value=0.79 Score=46.52 Aligned_cols=80 Identities=5% Similarity=-0.020 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
...+...+.+...+..|-++|..+.+ ..++++.+...+++.+|..+-+...+ ..|+ +|.--.+.++...+++
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD----~ksiVqlHve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD----LKSLVQLHVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc----HHHHhhheeecccchHhHhhhhhCcc--cccc--ccchHHHHhhhhhhHH
Confidence 33334444445555556666655532 23455666666666666666665544 2233 2333344445555555
Q ss_pred HHHHHHHH
Q 006303 274 KSRAIYED 281 (651)
Q Consensus 274 ~a~~~~~~ 281 (651)
+|.+.|.+
T Consensus 822 EAqkAfhk 829 (1081)
T KOG1538|consen 822 EAQKAFHK 829 (1081)
T ss_pred HHHHHHHH
Confidence 55555543
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.45 E-value=1.1 Score=36.54 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=54.3
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~ 148 (651)
+...+-.-+....+.|++.+|+..|+.+... .|..-- ...+.-.++-+|...+++++|+..+++.++. .|+.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r--yP~g~y---a~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR--YPFGEY---AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTH 80 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCC
Confidence 3445555566667889999999999999887 443211 2445567888999999999999999999994 4543
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.33 E-value=2.3 Score=42.95 Aligned_cols=158 Identities=16% Similarity=0.040 Sum_probs=89.4
Q ss_pred HHHhhcCCHHHHHHHHH--HHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChH
Q 006303 229 REFGKKRDLVSALRAYD--ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK 306 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 306 (651)
....-+++++.+.++.. ++.. .-+....+.++..+.+.|-.+.|+++..+-.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----------------------- 322 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPD----------------------- 322 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------------------
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChH-----------------------
Confidence 34445677777777665 2111 1124457777777777777777777654311
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
.-.....++|+++.|.++.++ ..+...|..|.....+.|+++-|.+.|
T Consensus 323 ----------------------~rFeLAl~lg~L~~A~~~a~~----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 323 ----------------------HRFELALQLGNLDIALEIAKE----------LDDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp ----------------------HHHHHHHHCT-HHHHHHHCCC----------CSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred ----------------------HHhHHHHhcCCHHHHHHHHHh----------cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223444566777777666532 235667777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
.+..+ |..|+-.|.-.|+.+.-.++.+.....| -++..+.++...|+.++..+++.+-
T Consensus 371 ~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 371 QKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66432 4556666667777777777766666655 2555566666667777777777653
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=9 Score=40.80 Aligned_cols=181 Identities=12% Similarity=0.098 Sum_probs=117.3
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 152 (651)
....-+..+.+...+..|+.+-.. .+.+++.. .+.+..-+.-+.+.|++++|...|-+-+.. ++|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~-----~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~---- 402 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTL-----AEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE---- 402 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH----
Confidence 444455555666666666665542 23344432 233334455567899999999888766542 33321
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCcc--HHHHHHH
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVRE 230 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~l~~~ 230 (651)
+ +..+.+..+...-..+++.+.+.+.. .......|+.+|.+.++.+.-.++.+..+..... ....+..
T Consensus 403 -----V---i~kfLdaq~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~I 472 (933)
T KOG2114|consen 403 -----V---IKKFLDAQRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEI 472 (933)
T ss_pred -----H---HHHhcCHHHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHH
Confidence 2 22556678888888889999988854 3444667889999999999888888777643333 4456677
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
+.+.+-.++|..+-.... .+.+....++. ..|++++|++.+..++-
T Consensus 473 lr~snyl~~a~~LA~k~~-----~he~vl~ille---~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFK-----KHEWVLDILLE---DLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHhChHHHHHHHHHHhc-----cCHHHHHHHHH---HhcCHHHHHHHHhcCCH
Confidence 777777777766655433 24455555554 56889999999987753
No 247
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.14 E-value=6.8 Score=39.08 Aligned_cols=170 Identities=10% Similarity=0.047 Sum_probs=116.7
Q ss_pred HHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHH
Q 006303 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY 257 (651)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 257 (651)
|+....+|-+......++..+...-.....+.+..++ ..+..++..++.+|... ..+.-..+|+++.+..+ -|+.
T Consensus 56 ~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv 133 (711)
T COG1747 56 IISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVV 133 (711)
T ss_pred HHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHH
Confidence 3333334545555666667776666666555555553 44557888899999888 66788899998888654 3455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----ccHHHHHHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHhHHHHH
Q 006303 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILL 331 (651)
Q Consensus 258 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-----~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll 331 (651)
.-..|...|-+ ++.+.+...|.....+=++ .-...|.-+......+.+..+.+...+... |...-...+.-+-
T Consensus 134 ~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 134 IGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 55666666655 8888888888887655332 123467777766677888888888888664 3333445566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 006303 332 KACCLAGNTVLAQEIYGEVKHL 353 (651)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~ 353 (651)
.-|....++.+|++++..+.+.
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhh
Confidence 7888899999999999988764
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=1.3 Score=41.21 Aligned_cols=151 Identities=10% Similarity=-0.106 Sum_probs=76.3
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhc-CCCccccchHHHHH-HH
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-RLPVKELDEEFRIV-QL 200 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~-~~ 200 (651)
....|+..+|...++++++. .|++.. .....-.++.. .|+.+.-...++++... +...+-..+...+. =.
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDll---a~kfsh~a~fy---~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLL---AVKFSHDAHFY---NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhccccccHHHHHHHHHHHh--Cchhhh---hhhhhhhHHHh---ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 45677777777777777763 343321 11112222222 56666666666666643 21111112222222 23
Q ss_pred HhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc----HHhHHHHHHHHHhcCCH
Q 006303 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDY 272 (651)
Q Consensus 201 ~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 272 (651)
+.+.|-+++|++..++. +.+..+..++...+.-.|++.++.+...+-...--... ..-|.. .-.+...+.+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aey 263 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEY 263 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccch
Confidence 44567777777665553 22334555566667777777777776554332110011 111222 2234555778
Q ss_pred HHHHHHHHHH
Q 006303 273 MKSRAIYEDL 282 (651)
Q Consensus 273 ~~a~~~~~~~ 282 (651)
+.|+++|+.=
T Consensus 264 e~aleIyD~e 273 (491)
T KOG2610|consen 264 EKALEIYDRE 273 (491)
T ss_pred hHHHHHHHHH
Confidence 8888888653
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.81 E-value=0.67 Score=42.15 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=53.8
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 244 (651)
+...|++..|...|...++.. |.+.. .+.++.=|.+.+..+|++++|..+|
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y--P~s~~---------------------------~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY--PNSTY---------------------------TPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCcc---------------------------cchhHHHHHHHHHhcccchHHHHHH
Confidence 334577777877777777654 32211 1234444666666666776666666
Q ss_pred HHHHhcCCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 245 DASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 245 ~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
..+.+.-.. | -..++--|.....+.|+.++|..+|+++.++
T Consensus 202 ~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 202 ARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666553221 1 2345555666666667777777777666655
No 250
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.76 E-value=6.7 Score=37.69 Aligned_cols=246 Identities=12% Similarity=0.075 Sum_probs=122.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMA--SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWW 379 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 379 (651)
|+++.|.+-|+.|... |... -...|.-...+.|+.+.|.+.-+..-. .-|. .-.+...+...|..|+|
T Consensus 134 G~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~------~Ap~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 134 GDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAE------KAPQLPWAARATLEARCAAGDW 204 (531)
T ss_pred CchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh------hccCCchHHHHHHHHHHhcCCh
Confidence 5555555555555441 1111 122233333456666666666655544 1222 33456666677777777
Q ss_pred HHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHH
Q 006303 380 QMALKVKEDMLSAG-VTPNTI--TWSSLINACAN---AGLVEQAMHLFEEMLQAGCEPNSQC-CNILLQACVEACQFDRA 452 (651)
Q Consensus 380 ~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a 452 (651)
+.|+++++.-.... +.++.. .-..|+.+-.. ..+...|...-.+..+. .|+..- -..-..++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhh
Confidence 77777776654332 233322 12222222111 12344444444444332 344321 22234466677777777
Q ss_pred HHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHH
Q 006303 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532 (651)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a 532 (651)
-.+++.+-+. .|....+...+++-.+ +.+
T Consensus 283 ~~ilE~aWK~-------------------------------------------------ePHP~ia~lY~~ar~g--dta 311 (531)
T COG3898 283 SKILETAWKA-------------------------------------------------EPHPDIALLYVRARSG--DTA 311 (531)
T ss_pred hhHHHHHHhc-------------------------------------------------CCChHHHHHHHHhcCC--CcH
Confidence 7777766543 4444444333333322 222
Q ss_pred HHHHHHHHHc-CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 006303 533 KALMNEMRTV-GLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVC-VRSKRLKQAFSLFEEM 609 (651)
Q Consensus 533 ~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m 609 (651)
..=++...+. .++| +....-.+..+-...|++..|..--+.... ..|....|-.|.+.- ...||-.++...+-+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 2222222110 1233 344555666666777777777665555554 356777776666553 3347777777777777
Q ss_pred HHC
Q 006303 610 KHY 612 (651)
Q Consensus 610 ~~~ 612 (651)
.+.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 654
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.73 E-value=2.8 Score=39.68 Aligned_cols=206 Identities=14% Similarity=0.085 Sum_probs=113.9
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc-CCCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~-~~~~~~~ 149 (651)
-..+..+..+..+.|.+++++..--.-... ..+--.+....+++.++.+.+-+..++.+++..-+.-... |..|...
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~--a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~ 120 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDT--ARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL 120 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc
Confidence 345566667777778777765432221111 0011112223666777777777777777777766655543 3333111
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCC----ccccchHHHHHHHHhcCCChHHHHHHhhhC-------C
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP----VKELDEEFRIVQLCVNKPDVNLAIRYACIV-------P 218 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~ 218 (651)
-+...+.....+...+.++++++.|+........ .-.....-.++..|.+..++++|.-+.... .
T Consensus 121 ----~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 121 ----GGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred ----cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 1111222233444468889999998887653322 223345566777788888877776553332 1
Q ss_pred -CC-C-----ccHHHHHHHHhhcCCHHHHHHHHHHHHh----cCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 219 -RA-D-----ILFCNFVREFGKKRDLVSALRAYDASKK----HLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 219 -~~-~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
++ . .....+.-++...|+..+|.+.-++..+ .|-.+ -....-.+.+.|...|+.+.|+.-|++.
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 11 1 2233455566667777777766665443 33322 2344556677777778877777776654
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.52 E-value=3.7 Score=33.93 Aligned_cols=125 Identities=13% Similarity=0.134 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHH
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (651)
..++..+...+.......+++.+...+ ..+..
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~------------------------------------------------~~~~~ 42 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN------------------------------------------------SENPA 42 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC------------------------------------------------ccchh
Confidence 456666666777888888887766432 23455
Q ss_pred HHHHHHHHHhh-cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 517 TYNILMKACCT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (651)
Q Consensus 517 ~~~~ll~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (651)
..+.++..|++ +.......+.. .++......++..|.+.+.++++..++.++.. |...+..+..
T Consensus 43 ~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~ 107 (140)
T smart00299 43 LQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIE 107 (140)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHH
Confidence 67778888875 34444444442 13344455577888888888888888877643 2223333444
Q ss_pred c-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 596 S-KRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (651)
Q Consensus 596 ~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 630 (651)
. ++.+.|.+++++- -+...|..++..+..
T Consensus 108 ~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 108 HLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 4 7888888877762 366678887777654
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.51 E-value=3.7 Score=33.92 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (651)
.++..+.+.+........++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444444444444444332 333344444444443
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=5.3 Score=35.70 Aligned_cols=148 Identities=12% Similarity=0.070 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHH---CC--CCCCHHhHHHHHH
Q 006303 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK---LG--VMADMASYNILLK 332 (651)
Q Consensus 258 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~---~~--~~~~~~~~~~ll~ 332 (651)
.|+--...|..+|..+.|-..+++.-+. .-..++++|+++|++-.. .+ .+.-...+..+-+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~--------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA--------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH--------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 4555556677777777766666654321 001234556666655432 11 0111223444445
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAG---VTPNTITWSSLINAC 408 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~ 408 (651)
.+.+...+++|-..+.+-......-.--++ -..|...|-.+....++..|.++++.-.+.+ -.-+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 555666666655444332211000000111 1224444445555666777777666643322 112445555666654
Q ss_pred HhcCCHHHHHHH
Q 006303 409 ANAGLVEQAMHL 420 (651)
Q Consensus 409 ~~~g~~~~a~~~ 420 (651)
- .|+.+++.++
T Consensus 239 d-~gD~E~~~kv 249 (308)
T KOG1585|consen 239 D-EGDIEEIKKV 249 (308)
T ss_pred c-cCCHHHHHHH
Confidence 3 3555554443
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.49 E-value=1.5 Score=35.75 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=51.8
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
...+.|++++|++.|+.+..+. |.+. -...+...|+.+|.+.+++++|+..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ry--P~g~---------------------------ya~qAqL~l~yayy~~~~y~~A~a~ 69 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRY--PFGE---------------------------YAEQAQLDLAYAYYKQGDYEEAIAA 69 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--CCCc---------------------------ccHHHHHHHHHHHHHccCHHHHHHH
Confidence 3344688999999888887654 2221 1124556688899999999999999
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhc
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGIC 269 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (651)
+++.++..+...-.-|...+.+++..
T Consensus 70 ~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 70 YDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 99998865443334455555555443
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.35 E-value=0.22 Score=31.25 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=29.4
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhH
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK 106 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 106 (651)
..+..+...+...|++++|+++|+++++. .|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 46778999999999999999999999999 7764
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=6.8 Score=36.29 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=64.3
Q ss_pred HhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccc--cchHHHHHH
Q 006303 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE--LDEEFRIVQ 199 (651)
Q Consensus 122 ~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~ 199 (651)
.....|++.+|...|+...... |.. -...+.....+...|+.+.|..++..+........- ......++.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PEN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--ccc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3455666666666666666532 211 111122222334456666666666654332111000 011122233
Q ss_pred HHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CcHHhHHHHHHHHHhcC
Q 006303 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICG 270 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 270 (651)
.....++.....+-+..-|.+......+...+...|+.+.|++.+-.+.+++.. -|...-..|+..+...|
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333344444445555555555555566666666666666666655544443211 23334444444444444
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.25 E-value=8.8 Score=37.46 Aligned_cols=85 Identities=11% Similarity=-0.072 Sum_probs=55.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc---ccCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD---AKWWQMALKVKEDMLSAGVTPNTIT 400 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~ 400 (651)
..+...++-+|....+++..+++++.+....... +.-+...--...-++.+ .|+.++|++++..+....-.++..+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3444456667888889999999999888631000 11122222344555666 7888888888888665555677788
Q ss_pred HHHHHHHHH
Q 006303 401 WSSLINACA 409 (651)
Q Consensus 401 ~~~ll~~~~ 409 (651)
|..+.+.|-
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 877776654
No 259
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.24 E-value=1.2 Score=41.16 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-----HYQIQPNLVTYI 622 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 622 (651)
..++..++..+..+|+.+.+...++++.... +-|...|..+|.+|.+.|+...|+..|+.+. +.|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3467778889999999999999999999864 3488899999999999999999999999876 478999998888
Q ss_pred HHHHHH
Q 006303 623 TLLRAR 628 (651)
Q Consensus 623 ~l~~~~ 628 (651)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 777773
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.15 E-value=1 Score=39.00 Aligned_cols=67 Identities=21% Similarity=0.108 Sum_probs=58.4
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
...+..++..|.+.|+.++|.+.|.++......|.+. .+++-++++.....+++..+...+.+....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----IDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999888777755 666778899999999999999998888764
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.04 E-value=8 Score=39.71 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCccc-----HHHHHHHHHhhc------CChHHHHHHHHHHHHCCCCCCHHh
Q 006303 259 CRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLN-----IYVFNSLMNVNA------HDLKFTLEVYKNMQKLGVMADMAS 326 (651)
Q Consensus 259 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~~~~-----~~~~~~ll~~~~------~~~~~a~~~~~~m~~~~~~~~~~~ 326 (651)
...++....-.||-+.+++.+.+..+. ++.-. ...|+..+..+. .+.+.+.++++.+... -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555555556666666666554442 12111 122233332222 2456778888887765 466655
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 327 YNIL-LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 327 ~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
|... .+.+...|++++|++.|+........ .-+.....+--+...+.-..+|++|...|..+.+.. ..+..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 5433 35566778888888888865431111 012233445556777888889999999999988753 22444444444
Q ss_pred HH-HHhcCCH-------HHHHHHHHHHHH
Q 006303 406 NA-CANAGLV-------EQAMHLFEEMLQ 426 (651)
Q Consensus 406 ~~-~~~~g~~-------~~a~~~~~~~~~ 426 (651)
.+ +...|+. ++|.++|.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33 3455666 888888887754
No 262
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=14 Score=38.87 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 589 (651)
-||-..|..-+.+++. ++++-+++-+.+. .+.-|.-.+.+|.+.|+.++|.+++.+... .. -.
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ek 776 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EK 776 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HH
Confidence 6788888888888873 6666665544432 245666788999999999999999877543 11 56
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 006303 590 IKVCVRSKRLKQAFSLFEEM 609 (651)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m 609 (651)
..+|.+.|++.+|.++--+-
T Consensus 777 v~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 777 VKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 78999999999998866554
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.71 E-value=6.5 Score=34.49 Aligned_cols=160 Identities=11% Similarity=0.001 Sum_probs=81.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh-hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006303 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (651)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (651)
..+||.|.-.+...|+++.|.+.|+...+..+.-+-...|.-|.. +.|++..|.+-+...-+.. +.|+. -...+-.-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPf-R~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPF-RSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChH-HHHHHHHH
Confidence 446777777777777777777777777766444333344444443 3467777766666655442 11221 11111111
Q ss_pred HhcCCHHHHHHHH-HHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHH
Q 006303 335 CLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT------PNTITWSSLINA 407 (651)
Q Consensus 335 ~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~------~~~~~~~~ll~~ 407 (651)
-..-+..+|..-+ ++... .|..-|...|-.|.- |++. ...+++++....-. .=..||--+..-
T Consensus 177 E~k~dP~~A~tnL~qR~~~--------~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEK--------SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HhhCCHHHHHHHHHHHHHh--------ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 2233455554433 33322 343444333322221 1111 12223333221100 113567778888
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 006303 408 CANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~ 427 (651)
+...|+.++|..+|+-....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 88889999999988887754
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=6.6 Score=36.88 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=40.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH----HHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY----STIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 398 (651)
|...+...=++|...|+.+.-...++++... ..+|...| ..+..++...|-+++|++.-++..+.+ +-|.
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-----wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~ 209 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-----WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDC 209 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccc-----cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-Ccch
Confidence 4444444444455555554444444444321 12222211 222333344555555555555544432 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 399 ITWSSLINACANAGLVEQAMHLFE 422 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~ 422 (651)
-.-.++...+...|+..++.+...
T Consensus 210 Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 210 WASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHHHHHHhcchhhhHHHHHH
Confidence 444444444444555555544443
No 265
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.62 E-value=6.3 Score=34.14 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKH---YQIQPNLVTYI 622 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~ 622 (651)
...+..+.+.|++.|+.+.|.+.+.++.+....+. ...+-.+|....-.|++..+.+.+.+... .|-.++...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34688899999999999999999999998655544 44667888999999999999999888763 33333333322
Q ss_pred HHHH--HHHhcCCHHHHHH
Q 006303 623 TLLR--ARSRYGSLHEVQQ 639 (651)
Q Consensus 623 ~l~~--~~~~~g~~~~a~~ 639 (651)
.+.. ++...|++.+|-+
T Consensus 116 k~~~gL~~l~~r~f~~AA~ 134 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAE 134 (177)
T ss_pred HHHHHHHHHHhchHHHHHH
Confidence 3333 2334667777655
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.47 E-value=21 Score=39.85 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=27.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHH--HHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT--YSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
-+.+|..+|+|.+|..+..++.. ..+... -..|+.-+...++.-+|-++..+..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~-------~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE-------GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC-------CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 34555566666666666555431 112111 2445556666666666666555544
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.28 E-value=0.092 Score=30.72 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=28.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 92 (651)
+.++++.+|++ ..+|..++..|...|++++|++
T Consensus 2 y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 34677888999 9999999999999999999863
No 268
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.23 E-value=3.6 Score=33.70 Aligned_cols=65 Identities=12% Similarity=0.000 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCC
Q 006303 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD 221 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 221 (651)
.+.++.....-...++.+++..+++.+.-.. |.....-..-+..+...|++.+|.++++.+....
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3334444434444688888988888887644 5554444444555566666666666666664443
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.94 E-value=4.3 Score=40.47 Aligned_cols=59 Identities=8% Similarity=0.117 Sum_probs=40.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 553 ILIDACGGSGNVEGALQILKIMREDGMS-PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
.+..++.+.|+.++|.+.+.+|.+..-. -+......|+.++...+.+.++..++.+--+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3445556778888888888888764211 1333556788888888888888888887643
No 270
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.93 E-value=24 Score=39.36 Aligned_cols=157 Identities=11% Similarity=0.155 Sum_probs=75.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH--------HHH
Q 006303 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--------FTY 366 (651)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------~~~ 366 (651)
..++....|..---.++|++.... ++..+....+-..+..|.++-+.+....+......-..+.+. ..|
T Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (932)
T PRK13184 662 ELFLSFWSGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFF 738 (932)
T ss_pred HHHHHHHhcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHH
Confidence 344444555555556666666653 355566666666678888887777666655311010011111 012
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 006303 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN--SQCCNILLQA 442 (651)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~ 442 (651)
-.-+.++....+++++...+... .|.. ..+..++.-+.-.++.+....+.+.+.+.-.... .......+.+
T Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (932)
T PRK13184 739 LKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQA 813 (932)
T ss_pred HHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHH
Confidence 22234444444555555433221 2222 2233333333334445555555554444321111 1123445666
Q ss_pred HHhcCChhHHHHHHHHh
Q 006303 443 CVEACQFDRAFRLFRSW 459 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~ 459 (651)
|.-..++++|-++++..
T Consensus 814 ~~~~~~~~~~~~~~~~~ 830 (932)
T PRK13184 814 HLWNRDLKKAYKLLNRY 830 (932)
T ss_pred HHHhccHHHHHHHHHhC
Confidence 77777777777777554
No 271
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.58 E-value=7.7 Score=32.90 Aligned_cols=135 Identities=13% Similarity=0.173 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCc
Q 006303 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496 (651)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (651)
..++++.+.+.+++|+...+..+++.+.+.|++..-..++.. +
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~--------------------------------- 55 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----H--------------------------------- 55 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----c---------------------------------
Confidence 345666777778888888888899988888887665555432 1
Q ss_pred cCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
+-+|.......+-.+...+..+.++--+|.++ =...+..+++.+...|++-+|.++......
T Consensus 56 --------------Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~ 117 (167)
T PF07035_consen 56 --------------VIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHK 117 (167)
T ss_pred --------------ccCCcHHHHHHHHHhHccChHHHHHHHHHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 24454444444444443333344443334331 011345566777788888888887766532
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 577 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
. +......++.+-.+.+|...=..+++-..
T Consensus 118 ~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 118 V----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred c----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11222345566666666554444444443
No 272
>PRK11906 transcriptional regulator; Provisional
Probab=91.55 E-value=4.5 Score=40.21 Aligned_cols=94 Identities=10% Similarity=0.007 Sum_probs=48.6
Q ss_pred CCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-cccHHHHHH
Q 006303 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNS 296 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ 296 (651)
.++.+...+..++.-.++++.|...|+.... ..|| ..+|......+.-.|+.++|.+.+++..+..+ ..-......
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 3334444455555555666667777766665 3343 33444444445556777777777766544421 122233333
Q ss_pred HHHhhc-CChHHHHHHHHH
Q 006303 297 LMNVNA-HDLKFTLEVYKN 314 (651)
Q Consensus 297 ll~~~~-~~~~~a~~~~~~ 314 (651)
.+..|. ...+.+..+|-+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 414 CVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHcCCchhhhHHHHhh
Confidence 343344 456666666544
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.21 E-value=8.3 Score=32.53 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=71.8
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH-----HHHHHhhcCC
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF-----NSLMNVNAHD 304 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-----~~ll~~~~~~ 304 (651)
+++.++.++|+.-|..+.+.|... ...............|+...|...|++.-.....|-..-= ..++-.-.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456677788888888887766532 2223333344456678888888888877665433332211 1111122356
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+++...-.+.+...+-+.....-..|.-+-.+.|++.+|.+.|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666666665555444445555666666677777777777777654
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.04 E-value=1 Score=28.15 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
++..+...|...|++++|+++|+++.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666666666655
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.04 E-value=0.54 Score=27.87 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
+|+.|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888754
No 276
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=13 Score=34.52 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=31.1
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
....|++.+|...|+...+... -+...--.+..+|...|+.+.|..++..+...
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3445666666666666655322 12344555666666666666666666665543
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.94 E-value=0.21 Score=29.63 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.6
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHh
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVS 100 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (651)
++..|+..+.+.|++++|+.+|++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999997654
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.94 E-value=7.5 Score=32.53 Aligned_cols=62 Identities=16% Similarity=0.034 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC
Q 006303 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (651)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (651)
++..|+.....-...++.+++..+++.+.... |...+.-..-+..+...|++.+|.++++.+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445555555555688888888888887644 544444433444444555555555555544
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.77 E-value=3.5 Score=38.28 Aligned_cols=77 Identities=9% Similarity=0.185 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNIL 439 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 439 (651)
++..++..+...|+++.+...++++..... -+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 455566666677777777777777766543 3666777777777777777777777776654 4667776666555
Q ss_pred HHH
Q 006303 440 LQA 442 (651)
Q Consensus 440 l~~ 442 (651)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 280
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.58 E-value=29 Score=37.65 Aligned_cols=261 Identities=10% Similarity=0.048 Sum_probs=134.9
Q ss_pred cchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHH----hhcCCHHHHHHHHHHHHhcCCCCcHHhH--H--HH
Q 006303 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF----GKKRDLVSALRAYDASKKHLSSPNMYIC--R--TI 262 (651)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~--~l 262 (651)
...+..-...|...|.+++|+...-.+.+. .....++.-+ ...+++...+...+.+ |+.... . .+
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~-~~aa~lle~~~~~L~~~~~lsll~~~~~~l------P~~~l~~~P~Lvl 419 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDP-EMAADLLEQLEWQLFNGSELSLLLAWLKAL------PAELLASTPRLVL 419 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCH-HHHHHHHHhhhhhhhcccchHHHHHHHHhC------CHHHHhhCchHHH
Confidence 445555666677777777777665444332 2222222222 2233433333333322 221111 1 12
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHhCCCcccH-------HHHHHH---HHhhcCChHHHHHHHHHHHHC----CCCCCHHh
Q 006303 263 IDV--CGICGDYMKSRAIYEDLRSQNVTLNI-------YVFNSL---MNVNAHDLKFTLEVYKNMQKL----GVMADMAS 326 (651)
Q Consensus 263 ~~~--~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~l---l~~~~~~~~~a~~~~~~m~~~----~~~~~~~~ 326 (651)
..+ .....++++|..++.++...-..|+. ..|+.+ +..+.++++.+.++-+..... -..+....
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 222 33457899999888887554222221 233333 334558888888877776543 23345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHH-----HHHHHcccC--HHHHHHHHHHHHHCC---CC-
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI-----VKVFADAKW--WQMALKVKEDMLSAG---VT- 395 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~--~~~a~~~~~~m~~~~---~~- 395 (651)
+..+..+..-.|++++|..+.++..++.. ..+...+..+ ...+...|. +.+.+..|....... ..
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~----~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMAR----QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 77778888889999999999888877532 2233333322 233455663 333333343332210 01
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHH--H--HHHHHHHHHhcCChhHHHHHHHHhhhcccc
Q 006303 396 --PNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CEPNSQ--C--CNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (651)
Q Consensus 396 --~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (651)
+-..++..++.++.+ .+.+..-...-.+.| ..|... - +..|+..+...|+.++|...+.++......
T Consensus 576 ~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 576 HEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred chhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 123445555666555 333222222221111 122222 2 235677778899999999998888765443
No 281
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=2.2 Score=43.23 Aligned_cols=153 Identities=10% Similarity=0.020 Sum_probs=102.8
Q ss_pred hhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHH
Q 006303 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (651)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~ 159 (651)
.+...|+++.|..++..+.+. .. ..++.-+-++|-.++|+++ -..|+. -+.+.+
T Consensus 595 t~vmrrd~~~a~~vLp~I~k~--~r------------t~va~Fle~~g~~e~AL~~-------s~D~d~-----rFelal 648 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIPKE--IR------------TKVAHFLESQGMKEQALEL-------STDPDQ-----RFELAL 648 (794)
T ss_pred HHhhhccccccccccccCchh--hh------------hhHHhHhhhccchHhhhhc-------CCChhh-----hhhhhh
Confidence 334567888887766665432 11 1222234566666666544 234433 455555
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHH
Q 006303 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239 (651)
Q Consensus 160 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 239 (651)
+ .|+++.|.++..+. ++..-|..|+.+....+++..|.+.|... .-+..|+-.+...|+-+.
T Consensus 649 ~-------lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a----~d~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 649 K-------LGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRA----RDLGSLLLLYTSSGNAEG 710 (794)
T ss_pred h-------cCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhh----cchhhhhhhhhhcCChhH
Confidence 5 79999998876653 44566999999999999999999998775 346677778888888887
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
...+-....+.|. .|.-.-+|-..|+++++.+++..-
T Consensus 711 l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 7777777766553 233334566789999998888754
No 282
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.31 E-value=13 Score=33.46 Aligned_cols=199 Identities=16% Similarity=0.058 Sum_probs=92.9
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHH-HH
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSL-MN 299 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~l-l~ 299 (651)
.+......+...+++..+...+...... ........+......+...+++..+...+.........+ ....+... +.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3444555566666666666666655532 122344455555555666666666666666665543322 11222222 22
Q ss_pred hhcCChHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcc
Q 006303 300 VNAHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADA 376 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 376 (651)
...++++.+...+.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----CcccchHHHHHhhHHHHHc
Confidence 233455555555555433110 012222223333344555666666666655542 112 234455555555555
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
++++.+...+......... ....+..+...+...+..+.+...+.+..+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555665555555543211 1222223333333444455555555555443
No 283
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.25 E-value=22 Score=35.77 Aligned_cols=164 Identities=9% Similarity=0.039 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHhhcC--ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH
Q 006303 289 LNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (651)
Q Consensus 289 ~~~~~~~~ll~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (651)
.|....-+++..++. ...-++.+..+|...| -+...|-.++.+|... .-+.-..+++++.+ ..-+....
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve------~dfnDvv~ 134 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE------YDFNDVVI 134 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH------hcchhHHH
Confidence 456666677776664 3445667777887765 4667788888888877 44566777776665 23444444
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 006303 367 STIVKVFADAKWWQMALKVKEDMLSAGVTP-----NTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILL 440 (651)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll 440 (651)
..-+..+...++.+.+...|.++...-++. -...|..+... -..+.+....+..++... |...-...+.-+.
T Consensus 135 ~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 135 GRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 444444555578888888888876542210 12245555442 135677777777777653 3344455666667
Q ss_pred HHHHhcCChhHHHHHHHHhhhcc
Q 006303 441 QACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
.-|....++++|++++..+.+.+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhc
Confidence 77888899999999998877654
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=30 Score=37.19 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=97.6
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
++.........+..+-..|++++|...|-+.+.. ++|+ .++..+....+...-...|+.+.+.|+..
T Consensus 364 ~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s------------~Vi~kfLdaq~IknLt~YLe~L~~~gla~ 430 (933)
T KOG2114|consen 364 EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS------------EVIKKFLDAQRIKNLTSYLEALHKKGLAN 430 (933)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH------------HHHHHhcCHHHHHHHHHHHHHHHHccccc
Confidence 3333444455556666789999999988776543 3554 23556778888888889999999988665
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHH
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (651)
.+. ..+|++ .|.+.++.+.-.+..+... .|.. .......+..|.+.+=.++|..+..+......+...
T Consensus 431 ~dh-----ttlLLn---cYiKlkd~~kL~efI~~~~-~g~~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~i 498 (933)
T KOG2114|consen 431 SDH-----TTLLLN---CYIKLKDVEKLTEFISKCD-KGEW---FFDVETALEILRKSNYLDEAELLATKFKKHEWVLDI 498 (933)
T ss_pred chh-----HHHHHH---HHHHhcchHHHHHHHhcCC-Ccce---eeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHH
Confidence 442 233444 3444677666665554432 1111 112445667777778888888777766554444433
Q ss_pred HHHHHhhcCCHHHHHHHHHHHH
Q 006303 227 FVREFGKKRDLVSALRAYDASK 248 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~ 248 (651)
.+-..+++++|++.+..+.
T Consensus 499 ---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 499 ---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred ---HHHHhcCHHHHHHHHhcCC
Confidence 3445688999988887653
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.15 E-value=14 Score=33.54 Aligned_cols=61 Identities=11% Similarity=-0.018 Sum_probs=40.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
=+..-.+.|++++|.+.|+.+....+- | ...+.-.++.++-+.+++++|+..+++..+.-.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 344455668888888888888764321 1 344555666677788888888888888776633
No 286
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.84 E-value=15 Score=33.38 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=28.1
Q ss_pred HHcccCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 373 FADAKWWQMALKVKEDMLSAGV--TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 373 ~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
-.+.|++++|.+.|+.+...-+ +-...+.-.++.++.+.+++++|...+++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455566666666665554311 112334444455555556666666666555554
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.59 E-value=22 Score=37.60 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=9.4
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006303 336 LAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~ 352 (651)
...+.+.|+..|+.+..
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 34456666666655543
No 288
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.48 E-value=16 Score=33.19 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=45.1
Q ss_pred ccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
+..++++|+.-|+..++...+-..|- +.++-.++..+.+.|++++..+.|.+++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG----FKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG----FKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 35688999999999999855545553 67778889999999999999999988875
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.27 E-value=12 Score=31.37 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=64.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHH-HHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST-IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
..-.+.++.+++..+++.+.- +.|....... -...+...|+|.+|.++|+.+.+.. |....-..|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 344567899999999999887 4555544332 3455788999999999999987653 333444455554444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006303 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (651)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (651)
...-..-..+-+++.+.+- |+.+ ..+++.+....+...|.
T Consensus 90 ~~~D~~Wr~~A~evle~~~--d~~a-~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGA--DPDA-RALVRALLARADLEPAH 129 (160)
T ss_pred HcCChHHHHHHHHHHhcCC--ChHH-HHHHHHHHHhccccchh
Confidence 3332233333344555543 3322 23445544444444443
No 290
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.81 E-value=9.6 Score=33.01 Aligned_cols=95 Identities=17% Similarity=0.072 Sum_probs=47.3
Q ss_pred HhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l 158 (651)
.-+-.+|++++|..-|..++.....-..-. ..-.+.+-+.+..+.++++.|+.-..+.++. .|+ ....+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~---rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pt------y~kAl 171 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEE---RSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPT------YEKAL 171 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHH---HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--Cch------hHHHH
Confidence 444556666666666666666532211110 1112234444556666666666666666653 231 11223
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHhc
Q 006303 159 KNECQRLLDSGEVEMFVGLMEVLEEF 184 (651)
Q Consensus 159 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 184 (651)
.+-+..|-+..++++|++=|+++++.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 33344455556666666666666553
No 291
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.51 E-value=11 Score=30.13 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccc
Q 006303 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (651)
Q Consensus 397 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (651)
+...+..-+..+.++|+.|+-.+++.++.+.+ .+++...-.+..+|.+.|+..++-+++++.-+.+.+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44556677888889999999999999987644 788888889999999999999999999988777653
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.38 E-value=2.9 Score=35.96 Aligned_cols=97 Identities=10% Similarity=0.113 Sum_probs=67.7
Q ss_pred HHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchh
Q 006303 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (651)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~ 154 (651)
..+...+...|++++|+..+...+....+ +.+..++. .++.+....+|++++|+..++...+.+..+ ......
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~----lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elr 165 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKD-ENLKALAA----LRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELR 165 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchh-HHHHHHHH----HHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHh
Confidence 44567778899999999999998865322 22332222 578888999999999999999877654222 101112
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcC
Q 006303 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 185 (651)
.++++ ..|+-++|...|++.+...
T Consensus 166 GDill-------~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILL-------AKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHH-------HcCchHHHHHHHHHHHHcc
Confidence 22333 3799999999999998865
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.80 E-value=29 Score=34.08 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=47.2
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSP---DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
....+|..+...+.+.|.++.|...+.++...+... ++...-...+.+...|+..+|++.++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577888888888888888888888887643111 334444556777788888888888877765
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.76 E-value=5.5 Score=29.77 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 531 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
++.+-++.+....+.|++.+..+-+++|.+.+++..|.++|+-.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5555556666666666666666666666666666666666665553
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.16 E-value=6.5 Score=36.58 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
+.+++..++..=++.|+-||..+++.+|+.+.+.+++.+|..+...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4445555555555566666666666666666666666666665555443
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.06 E-value=8.1 Score=35.98 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=71.5
Q ss_pred cCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---Cccc--HHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH
Q 006303 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLN--IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM 324 (651)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g---~~~~--~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~ 324 (651)
.|......+...++.......+.+.++..+-+++... ..|+ .++|-.++.. -+.+.++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk--y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK--YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc--cChHHHHHHHhCcchhccccch
Confidence 3444556666667766666778888888887776541 1122 2333333222 3566888888888889999999
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
.+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999998888776664
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.83 E-value=5.5 Score=29.77 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (651)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 628 (651)
+.=++.+-++.+....+.|++....+.+++|.|.+|+..|.++|+-.+.. +..+...|..+++-.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 34456777788888889999999999999999999999999999988732 223566787777754
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.69 E-value=1.4 Score=25.34 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=26.5
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChh
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 105 (651)
..+..++..+...|++++|+..|++.++. .|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
Confidence 45677889999999999999999999988 554
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.61 E-value=0.72 Score=26.93 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=12.3
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 218 PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344455555555555555555543
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.78 E-value=54 Score=35.07 Aligned_cols=69 Identities=7% Similarity=-0.126 Sum_probs=36.2
Q ss_pred HHhcCCChHHHHHHhhhCCCCC------ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCH
Q 006303 200 LCVNKPDVNLAIRYACIVPRAD------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (651)
.+.+.+.+++|+...+..+.+. .+....+..+.-.|++++|-...-.|.. -+..-|..-+..+...++.
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc
Confidence 3444555555555554443322 3344556666666666666666666554 3444555555555555444
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.75 E-value=1.7 Score=25.07 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=27.1
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChh
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 105 (651)
..|..++..+...|++++|+..|++.++. +|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL--DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--CcC
Confidence 46778899999999999999999999988 554
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.32 E-value=2.6 Score=24.27 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666655
No 303
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.27 E-value=45 Score=33.72 Aligned_cols=168 Identities=5% Similarity=0.055 Sum_probs=94.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 302 (651)
-..++.-.-+..+...-++.-.+.++ +.|+- ..|..|.. -......++.++|++..+.|-. .+..-
T Consensus 171 Aq~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~lg~s----- 237 (539)
T PF04184_consen 171 AQEIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----SLGKS----- 237 (539)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----hhchh-----
Confidence 33456666667777777777777776 34543 23332222 2345678888888887654310 00000
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc--cHHHHHHHHHHHHcccCHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 380 (651)
......-..++.+......+-..+-..|..++.+.|+.++|++.++++.+. .+. ...+...|+.++...+.+.
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke-----~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE-----FPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh-----CCccchhhHHHHHHHHHHhcCCHH
Confidence 000000011122222222222334445667777889999999999999762 122 2346778999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 006303 381 MALKVKEDMLSAGVTP-NTITWSSLINACA 409 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~ 409 (651)
++..++.+-.+...+. -...|+..+-.+.
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 9999998865432221 2345666554333
No 304
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=85.24 E-value=31 Score=32.55 Aligned_cols=95 Identities=9% Similarity=0.039 Sum_probs=47.4
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHh----cCCCCcHHhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCccc----HH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKK----HLSSPNMYICRTIIDVC-GICGDYMKSRAIYEDLRSQNVTLN----IY 292 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~g~~~~----~~ 292 (651)
.+.......||+-||-+.|++.+.+..+ .|...|+..+..-+..+ ....-..+-++..+.+.+.|-.-+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4455567777888888777776665443 34444544443333322 222223344444444444543322 23
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHH
Q 006303 293 VFNSLMNVNAHDLKFTLEVYKNMQ 316 (651)
Q Consensus 293 ~~~~ll~~~~~~~~~a~~~~~~m~ 316 (651)
+|..+-....+++.+|-.+|-+..
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHc
Confidence 444444444456666655555543
No 305
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.15 E-value=55 Score=34.64 Aligned_cols=174 Identities=13% Similarity=0.080 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCCCccccchHHHHHHH-----HhcCCChHHHHHHhhhCC---------CCCccHHHHHHHHhhcC-
Q 006303 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQL-----CVNKPDVNLAIRYACIVP---------RADILFCNFVREFGKKR- 235 (651)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~---------~~~~~~~~l~~~~~~~g- 235 (651)
...|..+++.....+. ......++.. +....+.+.|..++...- ..+.+.+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 3567777777766552 2222222222 334567777777766541 23345556666666642
Q ss_pred ----CHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc----CChH
Q 006303 236 ----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA----HDLK 306 (651)
Q Consensus 236 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~----~~~~ 306 (651)
+.+.|+.+|....+.|. |+....-..+..... ..+...|.+.|...-..|.. ....+.+++.... .+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 56667777777776554 443332222222222 23566777777777776643 2222222222211 3667
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
.|..++.+..+.| .|...--...+..+.. ++.+.+.-.+..+..
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 7777777777766 2232222223333333 556655555555554
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.92 E-value=8.8 Score=33.50 Aligned_cols=44 Identities=7% Similarity=0.091 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
.+.+++..++-.+.++...+ -.+|+..+..|++.|.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPD-DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHhcchhhh
Confidence 34455555554444433222 234444555555555555554444
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.87 E-value=61 Score=34.89 Aligned_cols=126 Identities=16% Similarity=0.237 Sum_probs=65.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCC----CcHHhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CcccHHHHHHH
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSS----PNMYICRTI-IDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSL 297 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~l 297 (651)
.++..+.+.+... |.+.+++..+.-.. +-...+..+ +..+...+++..|.+.++.+.... ..|-...+..+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 3556666666555 77777765543211 222333333 222323368888888887765532 22334444444
Q ss_pred HHh----hcCChHHHHHHHHHHHHCC---------CCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 006303 298 MNV----NAHDLKFTLEVYKNMQKLG---------VMADMASYNILLKACC--LAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 298 l~~----~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 352 (651)
+.+ ..+..+++.+.++++.... ..|-..+|..+++.++ ..|+++.+.+.++++..
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 2345666666666653321 1234556666666554 45666666666555543
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.76 E-value=76 Score=35.89 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=27.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 555 IDACGGSGNVEGALQILKIMREDGMSPDVVA--YTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
+.+|-.+|+|.+|+.+..++.. ..|... -..|+.-+...++.-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4555566666666666555542 112221 1345555666666666666655553
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.45 E-value=16 Score=37.52 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=40.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N 725 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD-------------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------N 725 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc-------------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------c
Confidence 344566666666666666666666654432 334444555555555444444444444321 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEE 423 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~ 423 (651)
.-..+|...|+++++.+++..
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHh
Confidence 222234445666665555543
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.38 E-value=14 Score=28.04 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 006303 551 WTILIDACGGSGNVE--GALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRA 627 (651)
Q Consensus 551 ~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~ 627 (651)
|+.--..|....+.+ +..+-++.+....+.|++....+.+++|.|.+++..|.++|+-.+. .| +....|..+++-
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 333334444444433 5666667777778889999999999999999999999999998873 33 223377777664
Q ss_pred H
Q 006303 628 R 628 (651)
Q Consensus 628 ~ 628 (651)
+
T Consensus 89 l 89 (108)
T PF02284_consen 89 L 89 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.04 E-value=2.9 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 584 VAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
.+++.+...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777777888888888888877765
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.86 E-value=46 Score=32.69 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP---NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 396 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
....+|..+...+.+.|.++.|...+.++.+.+... .+.+.-.-.+.....|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678889999999999999999999988754211 334444455666778999999999988776
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.76 E-value=2.7 Score=25.58 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45789999999999999999999999875
No 314
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=83.00 E-value=23 Score=28.52 Aligned_cols=141 Identities=10% Similarity=0.128 Sum_probs=80.7
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
..-.|..++..+++.+..... +-. -++.++ +...+.-+-+-..++++.+-..- .. .
T Consensus 12 ~ildG~V~qGveii~k~v~Ss--ni~-----E~NWvI---CNiiDaa~C~yvv~~LdsIGkiF-Di-------------s 67 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS--NIK-----EYNWVI---CNIIDAADCDYVVETLDSIGKIF-DI-------------S 67 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS---HH-----HHTHHH---HHHHHH--HHHHHHHHHHHGGGS--G-------------G
T ss_pred HHHhchHHHHHHHHHHHcCcC--Ccc-----ccceee---eecchhhchhHHHHHHHHHhhhc-Cc-------------h
Confidence 345677888888888777632 111 111121 12222334444455555543311 11 1
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
..++.......+.......+.....++.+..+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.
T Consensus 68 ~C~NlKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp G-S-THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 234444444444444444566667788999999999999999998753 3477888889999999999999999999999
Q ss_pred HhCCCc
Q 006303 283 RSQNVT 288 (651)
Q Consensus 283 ~~~g~~ 288 (651)
.+.|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 999875
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.62 E-value=4 Score=23.38 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
.+..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666555
No 316
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.36 E-value=33 Score=29.87 Aligned_cols=114 Identities=16% Similarity=0.044 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHH--HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH----HHHHHHHHHHHcccCHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNI--LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 380 (651)
+.....+.+...+-.....++.. +...+...|++++|...++..... +.|. .+--.|.......|.++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~------t~De~lk~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ------TKDENLKALAALRLARVQLQQKKAD 143 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc------chhHHHHHHHHHHHHHHHHHhhhHH
Confidence 44445555554321112222222 346678899999999999887741 2222 22234567778899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
+|+.+++.....+. .......-.+.+...|+.++|..-|.+..+.+
T Consensus 144 ~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 144 AALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 99999988776543 23334455678889999999999999988875
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.19 E-value=15 Score=31.97 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=61.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 412 (651)
-+.+.|++++|..-|.....+...-.-......|..-..++.+.+.++.|+.-..+.++.+.. ......--..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 455678888888888888764211000111234555566778888888888888887776432 2223333345677788
Q ss_pred CHHHHHHHHHHHHHcC
Q 006303 413 LVEQAMHLFEEMLQAG 428 (651)
Q Consensus 413 ~~~~a~~~~~~~~~~~ 428 (651)
.++.|+.=|.++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 8888888888887763
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.05 E-value=1.8 Score=24.65 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=25.0
Q ss_pred hHHHHHhhhccCChHHHHHHHHHHHHhcCChh
Q 006303 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (651)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 105 (651)
+-.++..+.+.|++++|+..|+.+++. .|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~--~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR--YPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence 445677788899999999999999988 554
No 319
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.72 E-value=69 Score=33.17 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh-cCCCh
Q 006303 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV-NKPDV 207 (651)
Q Consensus 129 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 207 (651)
.+.+...+..++. -.|. .+..+.+-+..-.+.|..+.+.++|++-++.- |.....|......+. ..|++
T Consensus 61 ~~~~r~~y~~fL~--kyPl------~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~d~ 130 (577)
T KOG1258|consen 61 VDALREVYDIFLS--KYPL------CYGYWKKFADYEYKLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNGDP 130 (577)
T ss_pred HHHHHHHHHHHHh--hCcc------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCCCH
Confidence 3555666666664 3442 33333333334455788999999999987632 567777777665544 45666
Q ss_pred HHHHHHhhhCC-------CCCccHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 006303 208 NLAIRYACIVP-------RADILFCNFVREFGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 208 ~~A~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 249 (651)
+.-...|+.+. .+...|...+..-..++++.....+|+.+++
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 66666666642 2346677777777888899999999999887
No 320
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.67 E-value=69 Score=33.16 Aligned_cols=187 Identities=13% Similarity=0.095 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCch
Q 006303 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476 (651)
Q Consensus 397 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 476 (651)
+..+|..-+....+.|+.+.+.-+|+...-- +..-...|-..+.-....|+.+-+..++....+-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~------------ 362 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHV------------ 362 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC------------
Confidence 4567777777778888888888888776521 011122333333333344666666655543322111
Q ss_pred hhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHH-HHHHHH
Q 006303 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHI-SWTILI 555 (651)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li 555 (651)
.-.|....+.+.+.-+.++...|..+++.+...- |+.. .-..-+
T Consensus 363 ---------------------------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~ 407 (577)
T KOG1258|consen 363 ---------------------------------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKI 407 (577)
T ss_pred ---------------------------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHH
Confidence 0156677777777777788888888888887652 4433 222233
Q ss_pred HHHhcCCChHHHHH---HHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006303 556 DACGGSGNVEGALQ---ILKIMREDGMSPDVVAYTTAIKV-----CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627 (651)
Q Consensus 556 ~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 627 (651)
....+.|+.+.+.. ++..... | +-+..+.+.+.-- +.-.++.+.|..++.+|.+. ++++...|..+++.
T Consensus 408 ~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 408 NWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred hHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHH
Confidence 44556777777773 3332222 1 1222222222222 33367888899999988865 57777788888887
Q ss_pred HHhcCCH
Q 006303 628 RSRYGSL 634 (651)
Q Consensus 628 ~~~~g~~ 634 (651)
+...+..
T Consensus 485 ~~~~~~~ 491 (577)
T KOG1258|consen 485 ELIQPSG 491 (577)
T ss_pred HHhCCcc
Confidence 7766643
No 321
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=81.48 E-value=50 Score=31.45 Aligned_cols=129 Identities=14% Similarity=0.222 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHhhc--------CChHHHHHHHHHHHHCC---CCCCHHhHHHHHHHHHhcCC--
Q 006303 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--------HDLKFTLEVYKNMQKLG---VMADMASYNILLKACCLAGN-- 339 (651)
Q Consensus 273 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--------~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~-- 339 (651)
++.+.+++.|.+.|+.-+.++|-+.+.... .....+..+|+.|++.- -.++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 344555556666666555555444322211 12344566666665542 12233444444433 2222
Q ss_pred --HHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccC---HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 340 --TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW---WQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 340 --~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
.+.++.+|+.+.. .|-.+-|..-+.+-+-+++.... ...+..+++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~---~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLAD---AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHH---hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 2344555555554 23222233223333333322211 3466777777777777766666654443
No 322
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.85 E-value=22 Score=27.00 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIK 591 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (651)
+.-+..+-++.+....+.|.+.+..+.+.+|.+.+++..|.++|+-++.+- .+....|..+++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445677777888888899999999999999999999999999999887641 112226665554
No 323
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.80 E-value=49 Score=30.90 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHhh----cHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC-CCCCCHHH
Q 006303 512 KPTTTTYNILMKACCT----DYYRVKALMNEMRT-VGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVA 585 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~----~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 585 (651)
--|..+...+++.... ....-.++.+.+.. .|-.++..+...++..++..+++.+-.++|+..... +..-|...
T Consensus 161 i~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rp 240 (292)
T PF13929_consen 161 IFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRP 240 (292)
T ss_pred eeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCch
Confidence 4455666666666543 23333344444443 234567777777888888888888888888777654 55567777
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 006303 586 YTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~ 606 (651)
|..+|......|+..-..++.
T Consensus 241 W~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 241 WAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHHHHcCCHHHHHHHh
Confidence 888888888888765444333
No 324
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.29 E-value=49 Score=30.62 Aligned_cols=104 Identities=12% Similarity=0.030 Sum_probs=55.0
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhc------CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSE------GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
........+.-..||..|+++.++-++.= .+|..-..-+......-.|.+++..++|.+++.+.-+-.+. |
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~---p 113 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV---P 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC---c
Confidence 34444555556788889999988876641 12211111112333344677788888888877766554432 2
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
... -..++.+-+- .|.+.+......++-...+.
T Consensus 114 Ekl-PpkIleLCIL---LysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 114 EKL-PPKILELCIL---LYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred ccC-CHHHHHHHHH---HHHHhcCHHHHHHHHHHHHh
Confidence 111 1122222222 44556666666666555543
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.11 E-value=91 Score=33.54 Aligned_cols=90 Identities=12% Similarity=0.136 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINAC 408 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~ 408 (651)
....+.-.|+++.|++.+-.... ...+.+++...+.-|.-.+-.+... ..+.... -.|...-+..||..|
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~------~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y 334 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEF------NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQY 334 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-------HHHHHHHHHHHHHTT---------------------------HHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhhcc------CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHH
Confidence 34455567888888888766222 3455666555554443222211111 2222111 011125577778777
Q ss_pred Hh---cCCHHHHHHHHHHHHHcC
Q 006303 409 AN---AGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 409 ~~---~g~~~~a~~~~~~~~~~~ 428 (651)
.+ ..+...|.++|-.+....
T Consensus 335 ~~~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 335 TRSFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp HHTTTTT-HHHHHHHHHGGGGS-
T ss_pred HHHHhccCHHHHHHHHHHHHHcC
Confidence 75 456788888887776543
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.23 E-value=3.2 Score=23.58 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=23.4
Q ss_pred HHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 115 MVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 115 ~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
++..++..+...|++++|...|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456677788999999999999999874
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.17 E-value=2.4 Score=22.78 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.3
Q ss_pred hhHHHHHhhhccCChHHHHHHHHH
Q 006303 73 YYADMASKLAKDGRLEEFAMIVES 96 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~ 96 (651)
....+...+...|++++|+.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 456788899999999999998863
No 328
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.94 E-value=24 Score=34.23 Aligned_cols=123 Identities=17% Similarity=0.085 Sum_probs=81.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+-+|+..+|+. ......++..+.+..+.++..+.++.++.. .|+.+.. +..+-.-.......-.+.....+|.+
T Consensus 54 lerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~L---W~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 54 LERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPEL---WREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHH---HHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 66777888866 888888889888888999999999999988 4443322 11121112222233345555555555
Q ss_pred HHHc------CC----CccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCC
Q 006303 139 LNEL------GV----APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP 187 (651)
Q Consensus 139 ~~~~------~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 187 (651)
.++. +. .+........+.++++.|.-+.+.|..+.|+.+++.+++.+..
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 4432 11 1112234567778888888889999999999999999987754
No 329
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.85 E-value=57 Score=30.50 Aligned_cols=94 Identities=6% Similarity=0.103 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHH
Q 006303 546 PNHISWTILIDACGG-SG-NVEGALQILKIMRE-DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY-QIQPNLVTY 621 (651)
Q Consensus 546 p~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~ 621 (651)
-|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++..++..+++.+-.++|+..... +..-|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 344444444444433 11 22222333333333 234566666677777777777777777777766633 455566677
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 006303 622 ITLLRARSRYGSLHEVQQ 639 (651)
Q Consensus 622 ~~l~~~~~~~g~~~~a~~ 639 (651)
..+|......|+..-++.
T Consensus 242 ~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRK 259 (292)
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 777777777777665554
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.78 E-value=11 Score=35.43 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=60.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
-.+-|.+.|.+++|++.|..... +.| |.+++..-..+|.+..++..|..=....+..+ ..-...|+--+.+-
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHH
Confidence 45678889999999999988776 344 88888888889999999887777666655432 11122344334444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 409 ANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
...|...+|.+-++..+.. .|.
T Consensus 176 ~~Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHhhHHHHHHhHHHHHhh--Ccc
Confidence 4445555555555555543 455
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.48 E-value=58 Score=30.37 Aligned_cols=68 Identities=10% Similarity=-0.028 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 006303 552 TILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-----HYQIQPNLVT 620 (651)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 620 (651)
+.....|..+|.+.+|.++.++....+ +.+...|-.++..+...||--.|.+-++++. +.|+..|...
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 444456777788888877777777643 3355566677777777777666666666553 3455555443
No 332
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.00 E-value=1.1e+02 Score=33.10 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=96.4
Q ss_pred CccchhhhHHHHHhhhc-cCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCC
Q 006303 67 LSSRNDYYADMASKLAK-DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~ 145 (651)
|.....++..++..|.. ..+++.|+..+++.+....+++-... ....-.-++..+.+.+... |...+++.++.--.
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~--k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL--KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH--HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 33345667777787774 58899999999988766544332211 1112223344455555544 99888887764111
Q ss_pred ccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHH
Q 006303 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (651)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (651)
.........+..+ +...... .+++..|++.++.+........+.. ..++.
T Consensus 132 ~~~~~w~~~frll-~~~l~~~-~~d~~~Al~~L~~~~~~a~~~~d~~----------------------------~~v~~ 181 (608)
T PF10345_consen 132 YGHSAWYYAFRLL-KIQLALQ-HKDYNAALENLQSIAQLANQRGDPA----------------------------VFVLA 181 (608)
T ss_pred cCchhHHHHHHHH-HHHHHHh-cccHHHHHHHHHHHHHHhhhcCCHH----------------------------HHHHH
Confidence 0011112233322 2211211 2678888888877665332111111 02222
Q ss_pred HHHHH--HhhcCCHHHHHHHHHHHHhcCC---------CCcHHhHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 006303 226 NFVRE--FGKKRDLVSALRAYDASKKHLS---------SPNMYICRTIIDVC--GICGDYMKSRAIYEDLR 283 (651)
Q Consensus 226 ~l~~~--~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 283 (651)
.++.+ ..+.+..+++.+..+.+..... .|...+|..+++.+ ...|+++.+.+.++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22222 2344656667666666533211 23566777777664 45577777777666654
No 333
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.37 E-value=1.2 Score=37.05 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=57.4
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006303 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (651)
Q Consensus 369 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 448 (651)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45566667777777778888776655556777888888888887767777666611 11334556777777888
Q ss_pred hhHHHHHHHHhhh
Q 006303 449 FDRAFRLFRSWTL 461 (651)
Q Consensus 449 ~~~a~~~~~~~~~ 461 (651)
++.+.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 8888877776543
No 334
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=77.34 E-value=53 Score=29.33 Aligned_cols=222 Identities=17% Similarity=0.102 Sum_probs=143.7
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCcccc---HHHHHHHHHHHHcccCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 006303 337 AGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLINACANAG 412 (651)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g 412 (651)
.+....+...+..... ..+. ...+......+...+++..+...+...... ........+......+...+
T Consensus 36 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALE------LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHh------cCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh
Confidence 4666666667666665 2233 567788888889999999999888887752 23445667777778888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhcccccc
Q 006303 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQ-ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (651)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (651)
++..+...+.........+. ........ ++...|+++.+...+.+.......
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------- 162 (291)
T COG0457 110 KYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPE-------------------------- 162 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------------------
Confidence 89999999998887643331 22222333 678889999999999876431100
Q ss_pred CCCCccCCCcccccccccccCCCHHHHHHHHHHH--hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHH
Q 006303 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569 (651)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 569 (651)
.......+......+ .++.+.+...+..............+..+...+...++++.|..
T Consensus 163 -------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 223 (291)
T COG0457 163 -------------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223 (291)
T ss_pred -------------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHH
Confidence 001122222222222 23677888888877764211135677777778888888888888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 570 ILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 570 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
.+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 224 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 224 YYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888774 333 344444455555667788888888777743
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.29 E-value=6.5 Score=24.59 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=19.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcC
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHL 251 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 251 (651)
.|..+|...|+.+.|+++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46777888888888888888877643
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.57 E-value=42 Score=27.77 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHH-HHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS-TIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
..++.+++..+++.+.- +.|+..-.. .-...+...|+|++|.++|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrv------LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV------LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH------hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 47888888888888876 345443322 22345678889999999999888764
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.52 E-value=13 Score=36.71 Aligned_cols=119 Identities=9% Similarity=0.037 Sum_probs=59.3
Q ss_pred cCCHHHHHH-HHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006303 269 CGDYMKSRA-IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (651)
Q Consensus 269 ~g~~~~a~~-~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 347 (651)
.|+.-.|-+ ++.-+....-.|+.....+.|....|+++.+.+.+...... +-....+...+++...+.|++++|..+-
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 355444433 33333333334555555555555556666666655554332 1123345555666666666666666666
Q ss_pred HHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
+.|..- . + -+...........-..|-++++.-.|+++....
T Consensus 381 ~~~l~~---e-i-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 381 EMMLSN---E-I-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHhcc---c-c-CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 555431 1 1 233333333333344555666666666665543
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.79 E-value=8.8 Score=21.92 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776653
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.72 E-value=21 Score=31.56 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=53.7
Q ss_pred HHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchh
Q 006303 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (651)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~ 154 (651)
..-++.+.+.+.+.+|+.+.+.-.+. .|.. ...-..++..++-.|+|++|..-++-.-+ +.|+...-..+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtd------a~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~l 74 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTD------AGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASL 74 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCcc------ccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHH
Confidence 34466778889999999999888887 6653 22234457778999999999998887776 56655544455
Q ss_pred hHHHHH
Q 006303 155 FKLLKN 160 (651)
Q Consensus 155 ~~~l~~ 160 (651)
|+.++.
T Consensus 75 yr~lir 80 (273)
T COG4455 75 YRHLIR 80 (273)
T ss_pred HHHHHH
Confidence 555544
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.55 E-value=7.2 Score=22.32 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHL 353 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 353 (651)
+|..+...|...|++++|.+.|++..++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556667777777777777777777663
No 341
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=75.50 E-value=75 Score=30.15 Aligned_cols=131 Identities=14% Similarity=0.084 Sum_probs=81.1
Q ss_pred cccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH----CCCCCCH
Q 006303 509 FSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV-GLSPNHISWTILIDACGGSGNVEGALQILKIMRE----DGMSPDV 583 (651)
Q Consensus 509 ~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~ 583 (651)
..+..|...++.+..+--...++-.+..++..+. |-.--...+-....-|++.|+-+.|++.+.+..+ .|.+.|+
T Consensus 64 ~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 64 LVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred cceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 3467788888888777665555555555555543 2222344566677889999999999998877654 5778888
Q ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHH
Q 006303 584 VAYTTAI-KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA--RSRYGSLHEVQQ 639 (651)
Q Consensus 584 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~ 639 (651)
..+..-+ --|....-+.+-++..+.+.+.|...+...-...-.+ |....++.+|-.
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~ 202 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAAD 202 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHH
Confidence 7765433 3344444455666666777777777766432222221 223345666544
No 342
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.35 E-value=45 Score=27.54 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhcCCChHHHHHHHHHHHHCC-----CCCCHH
Q 006303 512 KPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHI--SWTILIDACGGSGNVEGALQILKIMREDG-----MSPDVV 584 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~ 584 (651)
.++..+|...+.. ....|.+.+..++.. ..|.++.-.+.-++......+++.+.-.. -..+..
T Consensus 11 ~~nL~~w~~fi~~----------~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~s 80 (145)
T PF13762_consen 11 LANLEVWKTFINS----------HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNS 80 (145)
T ss_pred hhhHHHHHHHHHH----------HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccc
Confidence 4555556544443 334555555555543 56888888888888888888888774310 123566
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006303 585 AYTTAIKVCVRSKR-LKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634 (651)
Q Consensus 585 ~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 634 (651)
.|..++.+..+..- .-.+..+|+-|++.+.+++..-|..++.++.+.-..
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 78999999977665 456788999999888999999999999999876443
No 343
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.95 E-value=89 Score=30.72 Aligned_cols=96 Identities=15% Similarity=0.023 Sum_probs=60.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC---------CC
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG---------VT 395 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~ 395 (651)
..+.-+.+.|..+|+++.|.+.|.++....-.. +-.+..|-.+|..-...|+|..+..+..+....- +.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 356678889999999999999998866532111 2234456667777778888888887777776541 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 396 PNTITWSSLINACANAGLVEQAMHLFEEM 424 (651)
Q Consensus 396 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 424 (651)
+-...+..+...+. +++..|.+.|-..
T Consensus 229 ~kl~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 AKLKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred cchHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 23333444444333 3666666655443
No 344
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.65 E-value=1.2e+02 Score=32.22 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=27.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
+......++..|.+.|-.+.+.++++.+-.. .....-|..-+.-+.+.|+...+..+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~------~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQR------LLKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH------HHHHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445566777777777777777777766542 1223345555556666666665555555544
No 345
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.65 E-value=1.4e+02 Score=32.81 Aligned_cols=233 Identities=14% Similarity=0.044 Sum_probs=125.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhhhcCCccccHH---HHHHHHH-HHHcccCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 006303 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF---TYSTIVK-VFADAKWWQMALKVKEDMLSA----GVTPNTITWSSLI 405 (651)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll 405 (651)
.....++.+|..+..++......+...+... .|+.+-. .....|+++++.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456889999999998876432221222222 3444322 334578899999988877654 2234556677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHH--HHHhcCChhHH--HHHHHHhhhcccccccccccCCchhh
Q 006303 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQC---CNILLQ--ACVEACQFDRA--FRLFRSWTLSKTQVALGEDYDGNTDR 478 (651)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~--~~~~~g~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (651)
.+..-.|++++|..+..+..+..-.-+... |..+.. .+...|+...+ ...|.........
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~------------- 571 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE------------- 571 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-------------
Confidence 888889999999999887766532333333 333322 34556633222 2222222111000
Q ss_pred hhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHH----HHHHHHHcCCCCcHHH--HH
Q 006303 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA----LMNEMRTVGLSPNHIS--WT 552 (651)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~----~~~~~~~~~~~p~~~~--~~ 552 (651)
+ +.-..+-..+...++.++.+ .+.+.. -+..-......|-... +.
T Consensus 572 -----q-----------------------~~~~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~ 622 (894)
T COG2909 572 -----Q-----------------------KPRHEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALS 622 (894)
T ss_pred -----h-----------------------cccchhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHH
Confidence 0 00002233444555555544 332222 2222222222222222 23
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCC----CHHHHHHHHH--HHHhcCCHHHHHHHHHH
Q 006303 553 ILIDACGGSGNVEGALQILKIMREDGMSP----DVVAYTTAIK--VCVRSKRLKQAFSLFEE 608 (651)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~li~--~~~~~g~~~~A~~~~~~ 608 (651)
.|+..+...|++++|...++++......+ +...-...+. .....|+.+++.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 67788888999999999999988742222 2222223333 23457888877766665
No 346
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.44 E-value=66 Score=28.98 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=34.4
Q ss_pred HHHHHHhhc-CCHHHHHHHHHHHHhc--CCCCcHHhHHHHH---HHHHhcCCHHHHHHHHHHHHhCCCc
Q 006303 226 NFVREFGKK-RDLVSALRAYDASKKH--LSSPNMYICRTII---DVCGICGDYMKSRAIYEDLRSQNVT 288 (651)
Q Consensus 226 ~l~~~~~~~-g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~g~~ 288 (651)
.+.+.|... .+++.|+..|+..-+. |-+.+..+--+++ ..-...+++.+|+++|++.....+.
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555544 6667777777665542 1122222222333 3344557788888888887665443
No 347
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.10 E-value=1.5 Score=36.43 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (651)
..+....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.+++|.-++.
T Consensus 22 ~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~~~a~~Ly~ 94 (143)
T PF00637_consen 22 QPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLYEEAVYLYS 94 (143)
T ss_dssp -GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchHHHHHHHHH
Confidence 45566667777776655566778888888888887777777776621 11222456777788888888888887
Q ss_pred HHHHC--CCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 006303 608 EMKHY--QIQ--PNLVTYITLLRARSRYGSLHEVQ 638 (651)
Q Consensus 608 ~m~~~--g~~--p~~~~~~~l~~~~~~~g~~~~a~ 638 (651)
++... .+. -....+...+..+.+.++.+-..
T Consensus 95 ~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~ 129 (143)
T PF00637_consen 95 KLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWE 129 (143)
T ss_dssp CCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHH
T ss_pred HcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHH
Confidence 76522 111 12234444445555555544433
No 348
>PRK09687 putative lyase; Provisional
Probab=73.26 E-value=85 Score=29.70 Aligned_cols=232 Identities=9% Similarity=-0.017 Sum_probs=130.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCH----HHHHHHHHHHHHCCCCCC
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW----QMALKVKEDMLSAGVTPN 397 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~m~~~~~~~~ 397 (651)
+|.......+.++...|.. ++...+..+.. .+|...-...+.++...|+. +++...+..+... .++
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~-------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d 104 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS-------SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKS 104 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCC
Confidence 4555666666666666653 33333333332 34555666666667776652 4566666665433 345
Q ss_pred HHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhccccccccccc
Q 006303 398 TITWSSLINACANAGLV-----EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 472 (651)
.......+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+..
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----------- 169 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----------- 169 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----------
Confidence 55555555555444321 223333333332 3355555666667666665 445555555443
Q ss_pred CCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh---cHHHHHHHHHHHHHcCCCCcHH
Q 006303 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---DYYRVKALMNEMRTVGLSPNHI 549 (651)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~a~~~~~~~~~~~~~p~~~ 549 (651)
.++..+=...+.++.+ +...+...+..+.. .++..
T Consensus 170 ---------------------------------------d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~ 207 (280)
T PRK09687 170 ---------------------------------------DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEE 207 (280)
T ss_pred ---------------------------------------CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChH
Confidence 2222222333333332 23345555555543 46777
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 550 SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (651)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 629 (651)
+-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|+. +|...+..+.+. .||...-...+.+|.
T Consensus 208 VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 208 IRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 78888888888888 45666666666532 3 234677888888884 788888888753 467777777776664
No 349
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.94 E-value=39 Score=25.66 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=42.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhH
Q 006303 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASY 327 (651)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 327 (651)
..+...|+|++|..+.+.+ ..||...|-++-....|-.+....-+.+|..+|. |....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg~-p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLGLGSALESRLNRLAASGD-PRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhccHHHHHHHHHHHHhCCC-HHHHHH
Confidence 3466788898888887766 3688888888888777877777777777777663 444444
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.89 E-value=39 Score=25.65 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
..+...|+|++|..+.+.+ +.||...|..|-. .+.|..+....-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4455666666666655544 3556666655433 25555555555555555554
No 351
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.73 E-value=82 Score=29.31 Aligned_cols=73 Identities=5% Similarity=0.015 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMRE----DGMSPDVVAYT-TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 620 (651)
...+-.+.+-|++.++.+.+.++..+..+ .|.+.|..... .|.-.|....-.++-++..+.|.+.|...+...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 34455556666666666666665554433 35554443322 222233344445556666666666665555443
No 352
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.40 E-value=49 Score=28.44 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
+++|...|++..+. .|+..+|+.-+..+.
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 44455555555443 455555555555443
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.43 E-value=63 Score=30.16 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
++....+.|..+|.+.+|.++.++..+.+ +.+...+-.++..++..|+--.+.+-++.+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34556677888888888888888887765 56677788888888888887777777766543
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.19 E-value=1.6e+02 Score=31.87 Aligned_cols=152 Identities=13% Similarity=0.033 Sum_probs=80.7
Q ss_pred HHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHH
Q 006303 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (651)
Q Consensus 120 ~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (651)
+..+.+.+.+++|+.+.+.... ..|... -......++. .+.-.|++++|-...-.|... +...|..-+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~-i~kv~~~yI~---HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~ 431 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFV-IKKVGKTYID---HLLFEGKYDEAASLCPKMLGN-----NAAEWELWVF 431 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--Cccccc-hHHHHHHHHH---HHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHH
Confidence 4456678888888887765543 333211 1112333444 333468888888887777643 3445665566
Q ss_pred HHhcCCChHHHHHHhhhCCC--CCccHHHHHHHHhhcCCHH---HHHHHHHHHHhc------CCC-------CcHHhHHH
Q 006303 200 LCVNKPDVNLAIRYACIVPR--ADILFCNFVREFGKKRDLV---SALRAYDASKKH------LSS-------PNMYICRT 261 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~------~~~-------~~~~~~~~ 261 (651)
.+...++...-..+.-..|+ .+.+|..++..+.. .+.. +.++.|....=. -.+ -+......
T Consensus 432 ~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~ 510 (846)
T KOG2066|consen 432 KFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEV 510 (846)
T ss_pred HhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHH
Confidence 66666655544443332222 23567766666665 2222 122111111100 000 12233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006303 262 IIDVCGICGDYMKSRAIYEDLR 283 (651)
Q Consensus 262 l~~~~~~~g~~~~a~~~~~~~~ 283 (651)
|...|...+++..|++++-.+.
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 7778888888888888887665
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.29 E-value=13 Score=23.25 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 261 TIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 261 ~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
.|..+|...|+.+.|.++++++...|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 467789999999999999999986643
No 356
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.64 E-value=29 Score=25.98 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=36.8
Q ss_pred hhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCH
Q 006303 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDY 272 (651)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 272 (651)
...-|.+..+...+...+...|++++|++.+-++.+..... +...-..|+..+...|.-
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 33445566777778888888888888888888887754332 344556666666655554
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.82 E-value=32 Score=24.75 Aligned_cols=58 Identities=3% Similarity=-0.029 Sum_probs=43.5
Q ss_pred HHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
..-+..| ...+-.+|+..++..++.-.+|.. .+.++.+++.+|+..|++.+++..--.
T Consensus 11 e~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~-----rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 11 EKGLKLY-HQNETQQALQKWRKALEKITDRED-----RFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHh-ccchHHHHHHHHHHHHhhcCChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 677889999999999988544332 367788899999999999988776443
No 358
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.67 E-value=82 Score=28.85 Aligned_cols=58 Identities=5% Similarity=-0.094 Sum_probs=38.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRS 284 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 284 (651)
++..+.+.++++++...+.++.+.+...+..-.+.|-.+|-.. |....+++++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 5667778899999999999998887767766666666665332 445555666655543
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.59 E-value=74 Score=29.54 Aligned_cols=56 Identities=11% Similarity=0.012 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----cCChhHHHHHH
Q 006303 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE-----ACQFDRAFRLF 456 (651)
Q Consensus 401 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~ 456 (651)
....|-.|.+.+++..+.++-..-.+.--.-+...|..+...|.. .|.+++|.++.
T Consensus 121 leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 121 LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333344444555555544444444332212222234444443332 35555554444
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.07 E-value=25 Score=22.53 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (651)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 626 (651)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666667777777777777766666666554
No 361
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.93 E-value=2.3e+02 Score=31.71 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=67.2
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcC--CCC-cHHhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCcccHHHHHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL--SSP-NMYICRTIIDVCGICGDY--MKSRAIYEDLRSQNVTLNIYVFNS 296 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~g~~~~~~~~~~ 296 (651)
.-|..|+..|...|+.++|+++|.+..... ..+ -...+-.+++.+.+.+.. +-+++.-....+....-....+..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 457789999999999999999999887632 111 122344466666666554 555555555444432211122222
Q ss_pred -------------HHHh-hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006303 297 -------------LMNV-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (651)
Q Consensus 297 -------------ll~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 336 (651)
++.. .....+-+..+++.+....-.++..-.+.++..|++
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1221 113455667777777766555667777777777764
No 362
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=65.37 E-value=41 Score=31.98 Aligned_cols=86 Identities=19% Similarity=0.051 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
|.+++|+..|..-.. ..| |++++..-..+|.+...+..|+.-......+. ..-+..|..-+.+-...|...+
T Consensus 111 gKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-----~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-----KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred cchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-----HHHHHHHHHHHHHHHHHhhHHH
Confidence 678888888876543 556 78888888888988888887777666655431 1123344444445555566666
Q ss_pred HHHHHHHHHHCCCCCC
Q 006303 382 ALKVKEDMLSAGVTPN 397 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~ 397 (651)
|.+=++..++. +|+
T Consensus 184 AKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 184 AKKDCETVLAL--EPK 197 (536)
T ss_pred HHHhHHHHHhh--Ccc
Confidence 66666666654 454
No 363
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.99 E-value=2.2e+02 Score=30.88 Aligned_cols=112 Identities=6% Similarity=-0.027 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHc-CCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 528 DYYRVKALMNEMRTV-GLSPN--HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~-~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 604 (651)
+.+.|..++...... ++.+. ..++..+....+..+...+|...++...... .|.....--+..-.+.++++.+..
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHH
Confidence 566777777765432 22221 1233344333333322455555555543321 233334444444446777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 605 LFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 605 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
.+..|-.. .+-...-..-+.+++...|+.++|...++
T Consensus 334 ~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~ 370 (644)
T PRK11619 334 WLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILR 370 (644)
T ss_pred HHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 77766432 12233334445556566677777666443
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.40 E-value=56 Score=26.04 Aligned_cols=48 Identities=19% Similarity=0.368 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 530 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
-+..+.++....-.+.|++.+...-+.+|.+.+++..|.++|+-++.+
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 355556666666677778888888888888888888888887777653
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.09 E-value=59 Score=25.92 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 566 GALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (651)
Q Consensus 566 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 626 (651)
+..+-++.+...++.|++.....-+.+|.+.+|+..|.++|+-.+.. +.+-...|-.++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 34555667777889999999999999999999999999999988743 2233334555544
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.67 E-value=68 Score=28.56 Aligned_cols=77 Identities=12% Similarity=-0.006 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC--CCCCHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSS 403 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ 403 (651)
|.+.-+..+.+.+.+.+++...++-.+. -+.|...-..++..||-.|+|++|..-++..-... ..+...+|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka-----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA-----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc-----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 4556677888889999999888766652 24455667778889999999999987777665432 2334556777
Q ss_pred HHHH
Q 006303 404 LINA 407 (651)
Q Consensus 404 ll~~ 407 (651)
+|.+
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 6665
No 367
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.38 E-value=45 Score=29.37 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 579 MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 579 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
..|++.+|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777777777777777877777777777764
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=61.46 E-value=1.2e+02 Score=26.85 Aligned_cols=78 Identities=8% Similarity=-0.016 Sum_probs=59.2
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCH
Q 006303 558 CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH---YQIQPNLVTYITLLRARSRYGSL 634 (651)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~l~~~~~~~g~~ 634 (651)
+.+.|+ +.|.+.|-.+...+.--++...-.|..-|. ..+.+++.+++.+..+ .+-.+|...+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 678888888887665556666655555555 6788999999998873 34478999999999999999998
Q ss_pred HHH
Q 006303 635 HEV 637 (651)
Q Consensus 635 ~~a 637 (651)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 875
No 369
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.33 E-value=32 Score=23.50 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
|..-.-.+|.+|...|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334445666666666666666666554
No 370
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.44 E-value=1.4e+02 Score=30.12 Aligned_cols=61 Identities=7% Similarity=0.023 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 515 ~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
..+..+++...-+ ..+.|..+-.-|....++ +..+...-....-..|-++++...|+++..
T Consensus 357 ~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 357 DSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred chHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 3444455544432 445555555544443332 333332222233344556666666666554
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.92 E-value=12 Score=20.27 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=24.3
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHh
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (651)
..+..++..+...|++++|+..|+..++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35667788888899999999999988765
No 372
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.18 E-value=90 Score=28.36 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=58.6
Q ss_pred HHHHHhHHHHhhhhcChhHHHHHHHHHHHc------CCCcccc----ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 006303 113 LEMVASGIVKSIREGRIDCVVGVLKKLNEL------GVAPLEL----FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE 182 (651)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~------~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 182 (651)
..++..-+..+.+.|++.+|...|++.+.. .-+|-.. .+....-++++.|..+...|++-++++...+++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 444445566678899999998888876542 0011100 111222334454545555566666666555555
Q ss_pred hcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 006303 183 EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 249 (651)
... |.+..+|..-..+.+..-+..+|..-|..+++
T Consensus 258 ~~~--------------------------------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 258 RHH--------------------------------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hcC--------------------------------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 433 34445555555566666666777777777666
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.24 E-value=50 Score=23.82 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=38.5
Q ss_pred HHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHH
Q 006303 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLM 178 (651)
Q Consensus 119 ~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 178 (651)
.+..| .+.+.++|+..|++.++.-..+. ..|.+|-.++..+.+.|++.+.++.-
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~-----~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDRE-----DRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34434 78889999999999998643332 25556666666777789998888764
No 374
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.82 E-value=89 Score=32.84 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=21.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 006303 553 ILIDACGGSGNVEGALQILKIMRED--GMSPDVVAYTTAIKVCVRSKR 598 (651)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~ 598 (651)
+|+.+|...|++..+.++++..... |-+.=...||..|+-+.+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 4445555555555555555544431 222223344444555555444
No 375
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.16 E-value=23 Score=33.24 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=32.6
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 579 MSPDVVA-YTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (651)
Q Consensus 579 ~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 625 (651)
+.||..+ |+..|..-.+.||+++|++++++.++.|+.--..+|...+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3345444 4577788888888888888888888887776666665444
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.68 E-value=92 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.007 Sum_probs=19.9
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 249 (651)
.-|..|+..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4566677777777777777777777665
No 377
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.51 E-value=2.9e+02 Score=29.85 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHhcCChhHH-HhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHH-HcCCCccccccchhhHHHHHHHH
Q 006303 86 RLEEFAMIVESVVVSEGNVSKF-ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN-ELGVAPLELFDGSGFKLLKNECQ 163 (651)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 163 (651)
...+.+...+.+.+....|++- ..++. -..|...|++++|++.--... .-.+.++.. ....++..|.
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~-------SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~----y~etivak~i 106 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLA-------SKVYYYLGEYEDALEYALRAGDDFDVDENSD----YVETIVAKCI 106 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHH-------HHHHHHHHHHHHHHHHHHcCCccccccCccc----hhhHHHHHHH
Confidence 3455666677776665566532 22222 334678899999887643332 113344333 2333333222
Q ss_pred HHhhcchHHHHHHHHHHHH-hcCCCccccchHHHHHHHHhcCCChHHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLE-EFRLPVKELDEEFRIVQLCVNKPDVNLAI 211 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 211 (651)
- .-.+.+.+.++... ...+.+.-......++..|...+++..|.
T Consensus 107 d----~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~ai 151 (929)
T KOG2062|consen 107 D----MYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAI 151 (929)
T ss_pred H----HHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 1 22344444444221 22222332334445566666666655544
No 378
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.24 E-value=1.3e+02 Score=25.93 Aligned_cols=110 Identities=10% Similarity=0.055 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHHhhhcCCccccH-HHHHHHHHHH
Q 006303 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT----------VLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVF 373 (651)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 373 (651)
++.|.+.++.-...+ +.|...++....++....++ ++|+.-|++... +.|+. .++..+..+|
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~------I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK------INPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH------H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHHH
Confidence 345555555555554 55788888888888887443 444555555555 45554 5666777776
Q ss_pred HcccC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006303 374 ADAKW-----------WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (651)
Q Consensus 374 ~~~~~-----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 429 (651)
...+. ++.|...|++..+. .|+..+|..-+... .+|-++..++.+.+.
T Consensus 80 ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 80 TSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 65442 55666666666654 78888888777664 357777777777654
No 379
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.61 E-value=50 Score=24.90 Aligned_cols=58 Identities=12% Similarity=0.007 Sum_probs=38.2
Q ss_pred hccCChHHHHHHHHHHHHh----cCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 82 AKDGRLEEFAMIVESVVVS----EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
.+.|++.+|.+.+.+.... +..+.... ...++-+++..+...|.+++|+..+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~---~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSG---LAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4578999997666665544 22211001 1233445677788999999999999998874
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.20 E-value=1.4e+02 Score=29.79 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=42.2
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHH--HHhhcchHHHHHHHHHHHHhc
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ--RLLDSGEVEMFVGLMEVLEEF 184 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~A~~~~~~~~~~ 184 (651)
..+..+...+++..|..+|+.+.+. +.++.. +..+...|. .+++.-++++|.+.++.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~-----~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-LPGREE-----YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCchhh-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555677899999999999999986 444332 333433333 446677888999988887653
No 381
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.12 E-value=5.2e+02 Score=32.45 Aligned_cols=151 Identities=7% Similarity=0.012 Sum_probs=97.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCC--CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH-Hhhc
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNA 302 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~ 302 (651)
.+..+-.+++.+..|+-.++.-.....+ -...-+..+...|...+++|...-+...... +...+..++ ....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHHHHHHHhh
Confidence 4555667788899999888874211111 1233455555689999999988887764221 333344443 4466
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHH-HHHHHcccCHHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI-VKVFADAKWWQM 381 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 381 (651)
|++..|...|+++.+.+ ++...+++.++......|.++..+-..+....- ..+....++.+ +.+--+.++++.
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-----~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-----RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-----cCHHHHHHHHHHHHHHhhhcchhh
Confidence 99999999999998875 334677888888777888888887766655431 22333334333 444467788887
Q ss_pred HHHHHH
Q 006303 382 ALKVKE 387 (651)
Q Consensus 382 a~~~~~ 387 (651)
......
T Consensus 1537 ~e~~l~ 1542 (2382)
T KOG0890|consen 1537 LESYLS 1542 (2382)
T ss_pred hhhhhh
Confidence 776655
No 382
>PRK11619 lytic murein transglycosylase; Provisional
Probab=54.57 E-value=3.1e+02 Score=29.72 Aligned_cols=315 Identities=10% Similarity=0.008 Sum_probs=163.9
Q ss_pred HHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHH
Q 006303 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (651)
Q Consensus 120 ~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (651)
+....+.|++..+..+..++....+.| +. .+..+.. . ......++....+++-. -.|.....-..-..
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~pL~~----yl-~y~~L~~---~-l~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDYPLYP----YL-EYRQLTQ---D-LMNQPAVQVTNFIRANP---TLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCCCcHh----HH-HHHHHHh---c-cccCCHHHHHHHHHHCC---CCchHHHHHHHHHH
Confidence 334567888888777766654322221 10 0111111 0 11123454444444321 11222222333444
Q ss_pred HHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHH--HHH
Q 006303 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK--SRA 277 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~ 277 (651)
.+.+.+++..-.+++...|.+....+....+....|+.++|......+-..|. .....++.++..+.+.|.... ..+
T Consensus 108 ~La~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~ 186 (644)
T PRK11619 108 ELARREDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLE 186 (644)
T ss_pred HHHHccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHH
Confidence 56677888888886655666667777888888889998888777777765544 345577777777776654332 222
Q ss_pred HHHHHHhCCCcccHHHHHHHHHhh--------------cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH--hcCCHH
Q 006303 278 IYEDLRSQNVTLNIYVFNSLMNVN--------------AHDLKFTLEVYKNMQKLGVMADMASYNILLKACC--LAGNTV 341 (651)
Q Consensus 278 ~~~~~~~~g~~~~~~~~~~ll~~~--------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~ 341 (651)
=+..+...| +...-..+.... .++...+...+.. ++++...-..++-++. ...+.+
T Consensus 187 R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~ 258 (644)
T PRK11619 187 RIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAE 258 (644)
T ss_pred HHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHH
Confidence 233333332 111111111111 1122222221111 1223222221222222 234568
Q ss_pred HHHHHHHHHHHhhhcCCcccc--HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 342 LAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419 (651)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 419 (651)
.|..++...... ....+. ..++..+....+..+...++...+....... .+......-+..-...++++.+..
T Consensus 259 ~A~~~~~~~~~~---~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 259 NARLMIPSLVRA---QKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHH
Confidence 888888876431 112222 1234444444444432456666665543321 244455555666668899999988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.+..|.... .-...-.--+..++...|+.++|...|+.+..
T Consensus 334 ~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 334 WLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888885532 22334444567777778999999999998743
No 383
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.31 E-value=1.9e+02 Score=27.04 Aligned_cols=26 Identities=8% Similarity=-0.093 Sum_probs=15.2
Q ss_pred ccchHHHHHHHHhcCCChHHHHHHhh
Q 006303 190 ELDEEFRIVQLCVNKPDVNLAIRYAC 215 (651)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (651)
++..+..++..|.+.+++.+|++.|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34555666667777777776666553
No 384
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.85 E-value=2.1e+02 Score=30.80 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=17.0
Q ss_pred HHHHHhhhccCChHHHHHHHHHH
Q 006303 75 ADMASKLAKDGRLEEFAMIVESV 97 (651)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~ 97 (651)
=.++-.|.+.|++++|.++....
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~ 137 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANEN 137 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Confidence 35667788999999999988433
No 385
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.65 E-value=33 Score=23.41 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555666666666666555554
No 386
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.62 E-value=1.7e+02 Score=26.59 Aligned_cols=95 Identities=18% Similarity=0.108 Sum_probs=57.9
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccH---HHHHHHHhhcCCHHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSA 240 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a 240 (651)
.+.+++++++|++.+-.. ... .+....++.++...|+...|.+++....+..... ..++.. ..++.+.+|
T Consensus 87 W~LD~~~~~~A~~~L~~p---s~~---~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 87 WLLDHGDFEEALELLSHP---SLI---PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred HHhChHhHHHHHHHhCCC---CCC---cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHH
Confidence 344568889998877432 111 2335568888888899999999988876554333 222333 556788888
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 006303 241 LRAYDASKKHLSSPNMYICRTIIDVCGI 268 (651)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (651)
...-+...+. -....+..++..+..
T Consensus 160 f~~~R~~~~~---~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 160 FSFQRSYPDE---LRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHhCchh---hhHHHHHHHHHHHHH
Confidence 7776654431 112355555555543
No 387
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.07 E-value=2.9e+02 Score=28.85 Aligned_cols=88 Identities=7% Similarity=0.014 Sum_probs=46.5
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHh-hcCCHHHHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG-KKRDLVSALRA 243 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 243 (651)
+.+.|-+..|.++.+-+.... |. .++.....+|+.|+ +.++|+-.+++
T Consensus 352 l~~RGC~rTA~E~cKlllsLd--p~-----------------------------eDPl~~l~~ID~~ALrareYqwiI~~ 400 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLD--PS-----------------------------EDPLGILYLIDIYALRAREYQWIIEL 400 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcC--Cc-----------------------------CCchhHHHHHHHHHHHHHhHHHHHHH
Confidence 344688888888777776644 22 12334444555554 55677777777
Q ss_pred HHHHHhcC---CCCcHHhHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 006303 244 YDASKKHL---SSPNMYICRTIIDVCGICGD---YMKSRAIYEDLR 283 (651)
Q Consensus 244 ~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~ 283 (651)
++...... ..||..--.++...|.+... -+.|...+.+..
T Consensus 401 ~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 401 SNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred HHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 76664332 22443333344444544433 334444444444
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.98 E-value=37 Score=25.60 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=39.5
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccc-cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELF-DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 185 (651)
..+.|++..|.+.+.+..+....-.... ....-..+++........|++++|+..+++.+...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5689999999888888876522221111 00111224444445566799999999999887643
No 389
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.93 E-value=36 Score=22.35 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=24.8
Q ss_pred HHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 116 ~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
+..++.++.+.|++++|....+.+++ ++|+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 34567788999999999999999998 667553
No 390
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.80 E-value=1.2e+02 Score=24.43 Aligned_cols=69 Identities=9% Similarity=-0.055 Sum_probs=38.1
Q ss_pred HHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccc
Q 006303 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (651)
Q Consensus 119 ~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 192 (651)
+-..+-..+.-.....++++..+. ...+....+. .-+++.|..+++.-+ ++.++|+.|...++-.....
T Consensus 32 ~~~~~p~~~~~~~L~~lLer~~~~-f~~~~~Y~nD--~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~ 100 (126)
T PF08311_consen 32 IEENYPSGGKQSGLLELLERCIRK-FKDDERYKND--ERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLAL 100 (126)
T ss_dssp HHHHCTTCCCCHHHHHHHHHHHHH-HTTSGGGTT---HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHH
T ss_pred HHHHCCCCCchhHHHHHHHHHHHH-HhhhHhhcCC--HHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHH
Confidence 333444445666666677776654 1111111111 125666667766444 88999999988776554433
No 391
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.47 E-value=10 Score=30.46 Aligned_cols=33 Identities=9% Similarity=0.166 Sum_probs=27.1
Q ss_pred hhhccCChHHHHHHHHHHHHhcCChhHHHhhhh
Q 006303 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS 112 (651)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 112 (651)
.+...|.-.+|-.+|+.|+..|-.|+.|..++.
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPddW~~Ll~ 136 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDDWDALLK 136 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCccHHHHHH
Confidence 334567888999999999999999998877554
No 392
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.43 E-value=65 Score=21.18 Aligned_cols=32 Identities=19% Similarity=0.029 Sum_probs=22.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHh
Q 006303 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI 258 (651)
Q Consensus 225 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 258 (651)
..+.-++.+.|+++.|++..+.+++ .+|+-.-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 3456678888899999998888888 4565433
No 393
>PRK09687 putative lyase; Provisional
Probab=51.76 E-value=2.2e+02 Score=27.00 Aligned_cols=198 Identities=10% Similarity=-0.055 Sum_probs=98.8
Q ss_pred ccHHHHHHHHhhcCCH----HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCcccHH
Q 006303 222 ILFCNFVREFGKKRDL----VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-----MKSRAIYEDLRSQNVTLNIY 292 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~g~~~~~~ 292 (651)
......+.+++..|+. .++...+..+... .++..+-...+.++...+.. ..+...+...... ++..
T Consensus 69 ~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~ 143 (280)
T PRK09687 69 IERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTN 143 (280)
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHH
Confidence 4444455566666652 4566666655332 24555554455554444321 2233333332222 2333
Q ss_pred HHHHHHHhhcC-ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhcCCccccHHHHHHHH
Q 006303 293 VFNSLMNVNAH-DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG-NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (651)
Q Consensus 293 ~~~~ll~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (651)
+-...+.+.++ .-+.+...+-.+... +|...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 144 VR~~a~~aLg~~~~~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-------D~~~~VR~~A~ 213 (280)
T PRK09687 144 VRFAVAFALSVINDEAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-------DKNEEIRIEAI 213 (280)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-------CCChHHHHHHH
Confidence 33333333321 124455555555542 44444444555555442 13345555554442 35666667777
Q ss_pred HHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006303 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (651)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (651)
.++.+.|+ ..++..+-...+.+ + .....+.++...|+. +|...+..+.+. .+|..+-...+.+|
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 77777777 34555555555442 2 234566677777764 577777777654 34665555555554
No 394
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.71 E-value=2.2e+02 Score=27.11 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=60.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH--HHhhcC
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNAH 303 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l--l~~~~~ 303 (651)
.++..+.++++.....+.+..+.. ...-...++.+...|++..|++++.+..+.- + .+..+ +.....
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l---~--~l~~~~c~~~L~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL---E--ELKGYSCVRHLSS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---H--hcccchHHHHHhH
Confidence 456666677777777776666653 3344455666778899999999888765430 0 01000 011111
Q ss_pred ChHHHHHHHHHHHHC-----CCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 006303 304 DLKFTLEVYKNMQKL-----GVMADMASYNILLKACCLAGNTVLAQE 345 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~ 345 (651)
++++.....+++.+. -..-|+..|..++.+|.-.|+...+.+
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 222222222222211 014577888888888888887655543
No 395
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.01 E-value=1.9e+02 Score=26.22 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=8.4
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006303 336 LAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~ 352 (651)
..+++.+|+++|+++..
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 396
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.79 E-value=2.6e+02 Score=27.66 Aligned_cols=55 Identities=11% Similarity=0.063 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHhcCChhHHHhhhh-----HHHHHhHHHHhhhhcChhHHHHHHHHHH
Q 006303 85 GRLEEFAMIVESVVVSEGNVSKFASMLS-----LEMVASGIVKSIREGRIDCVVGVLKKLN 140 (651)
Q Consensus 85 g~~~~A~~~~~~~~~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~g~~~~a~~~l~~~~ 140 (651)
..+.++...|..+...+ +|+....++. .+++-.+...+.++|+...|.+++++.+
T Consensus 8 ~~Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666554 6655443332 3445556677889999999999888864
No 397
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.73 E-value=3e+02 Score=31.52 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 552 TILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
+.+++.|.+-+++.+|..++.+.++
T Consensus 1374 aellrllVdy~rl~eA~dLlsEive 1398 (1480)
T KOG4521|consen 1374 AELLRLLVDYERLSEALDLLSEIVE 1398 (1480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4567777777888888887777665
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.96 E-value=97 Score=27.25 Aligned_cols=52 Identities=17% Similarity=0.101 Sum_probs=36.9
Q ss_pred hcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 595 RSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (651)
Q Consensus 595 ~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 646 (651)
..++.+......+.+.+ ....|+...+..++.++...|+.++|++.++....
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555444444444331 24579999999999999999999999986665543
No 399
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.16 E-value=2.8e+02 Score=27.48 Aligned_cols=151 Identities=11% Similarity=-0.008 Sum_probs=83.9
Q ss_pred hhcChhHHHHHHHHHHHcCCCcccc-----ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHH
Q 006303 125 REGRIDCVVGVLKKLNELGVAPLEL-----FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (651)
Q Consensus 125 ~~g~~~~a~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (651)
+...+.++...|...++.. .|+.. .+..-++.|+.....+...|+...|.+++++.+-.-- ..+..
T Consensus 6 hs~~Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~ 76 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHP 76 (360)
T ss_pred CCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHH
Confidence 4456777777777777654 55443 2333445566666666667777777777776542100 00000
Q ss_pred HHhc-CCChHHHH-HHhhhCCCCCccHH---HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHH-hcCCHH
Q 006303 200 LCVN-KPDVNLAI-RYACIVPRADILFC---NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG-ICGDYM 273 (651)
Q Consensus 200 ~~~~-~~~~~~A~-~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 273 (651)
.+.. ..+...+. ++--..+.|...|. ..+..+.++|-+..|+++.+.+..-+..-|......+|+.|+ +.++++
T Consensus 77 ~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~ 156 (360)
T PF04910_consen 77 SFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQ 156 (360)
T ss_pred HhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHH
Confidence 0000 00000000 00000122333333 357788899999999999999888655446666666777654 567788
Q ss_pred HHHHHHHHHHh
Q 006303 274 KSRAIYEDLRS 284 (651)
Q Consensus 274 ~a~~~~~~~~~ 284 (651)
-.+++++....
T Consensus 157 ~Li~~~~~~~~ 167 (360)
T PF04910_consen 157 WLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhHhh
Confidence 78888776554
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.08 E-value=1.2e+02 Score=26.24 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 86 RLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
-++.|+.+++.+.+.-..|...-..+..-+-...+..|.+.|.+++|.++|++..+
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 34678888888877744443332222222234556778999999999999999987
No 401
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.75 E-value=1.8e+02 Score=25.34 Aligned_cols=60 Identities=7% Similarity=0.028 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCC--------------CCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLS--------------SPNMYICRTIIDVCGICGDYMKSRAIYED 281 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 281 (651)
++--+++-.|-+.-++.+.+++++.|.+..+ .+--..-|.-...+.+.|..+.|..++++
T Consensus 133 RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 133 RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4556778888899999999999998876422 12234566777778888888888888763
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.72 E-value=1.4e+02 Score=25.89 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCCCc--HHHH-----HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 529 YYRVKALMNEMRTVGLSPN--HISW-----TILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKR 598 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~--~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 598 (651)
++.|..+|+.+.+..-.|. .... ...+-.|.+.|.+++|.+++++... .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 5667777777766433321 1111 2223456666777777777766665 3444444444444444443
No 403
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.09 E-value=72 Score=20.40 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=20.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
.+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445556666666666666666666666655554
No 404
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.89 E-value=2e+02 Score=25.96 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHH
Q 006303 554 LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIK----VCVRSKRLKQAFSLFEEM 609 (651)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~m 609 (651)
-|......|++++|.+....+...-+.-|...+-.|.. =..+.|..++|+++.+.=
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445556666666665555433222223322222211 134455555555555443
No 405
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.74 E-value=99 Score=28.58 Aligned_cols=21 Identities=5% Similarity=-0.179 Sum_probs=11.9
Q ss_pred hHHHHhhhhcChhHHHHHHHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~ 138 (651)
.+++.+...|+..+|+.-|+.
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 344555666666666655554
No 406
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.97 E-value=2.7e+02 Score=26.66 Aligned_cols=48 Identities=8% Similarity=0.195 Sum_probs=23.6
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 560 GSGNVEGALQILKIMREDGMSPDVV---AYTTAIKVCVRSKRLKQAFSLFEEM 609 (651)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m 609 (651)
+.|+..+|.+.+..+.+. .|-.. ....++.+|....-+.+...++-+-
T Consensus 287 klGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666655542 12111 2234556665555555444444443
No 407
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=46.43 E-value=2.2e+02 Score=28.17 Aligned_cols=60 Identities=10% Similarity=-0.050 Sum_probs=42.0
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHH--HHhhcchHHHHHHHHHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ--RLLDSGEVEMFVGLMEV 180 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~A~~~~~~ 180 (651)
..+..+.+.+++..|..+|+++.+..+.+... ..+..+...|. .+++.-++++|.+.++.
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~---~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNH---TFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhh---hHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35567889999999999999999875554432 23344444443 34666778889888875
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.02 E-value=1.4e+02 Score=27.53 Aligned_cols=61 Identities=8% Similarity=-0.062 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhh-cCCccccHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 389 (651)
.+...|.+.|++++|.++|+.+...-+ +|-..+...+...+..++.+.|+.+..+.+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456677777888888888777754322 3333444445555666666666666666554444
No 409
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.91 E-value=1.3e+02 Score=30.07 Aligned_cols=76 Identities=8% Similarity=-0.098 Sum_probs=44.7
Q ss_pred HHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 006303 107 FASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE 182 (651)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 182 (651)
.-.++..-++..+++.++-.|++..|+++++.+.=.....=......-++++-.....|.-.+++.+|+..|..++
T Consensus 116 l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 116 LYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666788999999999999999988654211000000011122222233334555688888888887765
No 410
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.78 E-value=1.7e+02 Score=29.54 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.+++-.++++.+.+.| .+| ....-+++|.+.+++++|...+++-.+
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 3666777777777665 333 334456777888888888777776544
No 411
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.13 E-value=2.5e+02 Score=25.61 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=65.6
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHH-HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCC
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT-WSSLINACANAGL 413 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~ 413 (651)
...++..|+..|.+... +.|+.. .|+.=+-++.+..+++.+..=-.+.++. .|+.+- ...+..++.....
T Consensus 22 ~~k~y~~ai~~y~raI~------~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC------INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred chhhhchHHHHHHHHHh------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcc
Confidence 34456667776666555 456663 4555666777777777777666665553 445443 3334455566677
Q ss_pred HHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006303 414 VEQAMHLFEEMLQ----AGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (651)
Q Consensus 414 ~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 457 (651)
++.|+..+.+... ..+++-......|..+-.+.=...+..++.+
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 7888877777633 3344555566666665433333344444443
No 412
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.00 E-value=24 Score=28.44 Aligned_cols=32 Identities=6% Similarity=0.074 Sum_probs=24.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHH
Q 006303 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (651)
.-|.-.+|.++|.+|++.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34566678999999999998887 577777643
No 413
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.76 E-value=1.4e+02 Score=30.26 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=27.5
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006303 558 CGGSGNVEGALQILKIMREDGMSPDVVAY---TTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (651)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (651)
.+..|+.+ +++.+.+.|..++...- .+.+...+..|+. ++.+.+.+.|..++..
T Consensus 175 A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 175 AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNIM 231 (413)
T ss_pred HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcchH
Confidence 34456544 34445566655553321 2334333455654 3455566677777754
No 414
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.70 E-value=5.2e+02 Score=29.08 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=21.1
Q ss_pred hcCCChHHHHHHHHHHHHC-------------CCCCCHHHHHHHHHHHHhc
Q 006303 559 GGSGNVEGALQILKIMRED-------------GMSPDVVAYTTAIKVCVRS 596 (651)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~-------------~~~p~~~~~~~li~~~~~~ 596 (651)
.+.|+.++|+.++-..... ..+++...|-.++..|...
T Consensus 695 ~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 695 GRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 3677777777766544430 1233555566666665554
No 415
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.68 E-value=3.1e+02 Score=26.46 Aligned_cols=108 Identities=11% Similarity=-0.002 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHCCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 306 KFTLEVYKNMQKLGV----MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
+.+.+.|+.....+. ..++.....++....+.|+.+.-..+++.... ..+......++.+++...+.+.
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-------~~~~~~k~~~l~aLa~~~d~~~ 219 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-------STSPEEKRRLLSALACSPDPEL 219 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-------TSTHHHHHHHHHHHTT-S-HHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-------cCCHHHHHHHHHhhhccCCHHH
Confidence 344555555554311 34555566666777777776665555555543 3566777888888888888888
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCC--HHHHHHHHH
Q 006303 382 ALKVKEDMLSAG-VTPNTITWSSLINACANAGL--VEQAMHLFE 422 (651)
Q Consensus 382 a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~ 422 (651)
..++++.....+ +. +... ..++.++...+. .+.+.+.+.
T Consensus 220 ~~~~l~~~l~~~~v~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 220 LKRLLDLLLSNDKVR-SQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHHHHCTSTS--TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCcccc-cHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 888888888754 33 2333 334444442333 255555544
No 416
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=43.47 E-value=3.1e+02 Score=26.46 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHH---CCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 006303 553 ILIDACGGSGNVEGALQILKIMRE---DGMSPDVVAYT--TAIKVCVRSKRLKQAFSLFEEMKH-----YQIQPNLVTYI 622 (651)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 622 (651)
.++...-+.++.++|.++++++.+ .--.|+.+.|- .....+...||..++.+.+++..+ -|++|+..+-.
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHH
Q 006303 623 TLLR--ARSRYGSLHEVQQCLAVY 644 (651)
Q Consensus 623 ~l~~--~~~~~g~~~~a~~~~~~~ 644 (651)
-.+. .|.+.|++...-+-.-.|
T Consensus 160 Y~lssqYyk~~~d~a~yYr~~L~Y 183 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYRHALLY 183 (380)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
No 417
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.02 E-value=2.6e+02 Score=25.50 Aligned_cols=79 Identities=11% Similarity=-0.019 Sum_probs=37.7
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
|....++..|+..|.+.+. +.|+...|- -+-+.-+.+..+++.+..-..+.++. .|+.+....-++..+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~------tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYY------TNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLL 89 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhh------hhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHH
Confidence 5566677777777766665 555443221 11111223345666555555554442 2444433444444444
Q ss_pred cCCChHHHH
Q 006303 203 NKPDVNLAI 211 (651)
Q Consensus 203 ~~~~~~~A~ 211 (651)
....+++|.
T Consensus 90 ~s~~~~eaI 98 (284)
T KOG4642|consen 90 QSKGYDEAI 98 (284)
T ss_pred hhccccHHH
Confidence 444444333
No 418
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.05 E-value=1.4e+02 Score=22.11 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCH
Q 006303 174 FVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (651)
Q Consensus 174 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~ 237 (651)
+-++++.+.+.++-..+ -...+..+-...|+.+.|.+++..++..+..|..+++++...|.-
T Consensus 21 ~~~v~d~ll~~~ilT~~--d~e~I~aa~~~~g~~~~ar~LL~~L~rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 21 TRDVCDKCLEQGLLTEE--DRNRIEAATENHGNESGARELLKRIVQKEGWFSKFLQALRETEHH 82 (88)
T ss_pred HHHHHHHHHhcCCCCHH--HHHHHHHhccccCcHHHHHHHHHHhccCCcHHHHHHHHHHHcCch
Confidence 44556666666643221 111111111233455555555555554445555555555544443
No 419
>PRK10941 hypothetical protein; Provisional
Probab=40.91 E-value=2.5e+02 Score=26.37 Aligned_cols=62 Identities=16% Similarity=0.062 Sum_probs=46.7
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
...++|-.+|.+.++++.|+++.+.+... .| +..-+.--.-.|.+.|.+..|..=++...+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44566777888889999999988888873 34 4555666666788888888888888877655
No 420
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=40.64 E-value=3.8e+02 Score=26.65 Aligned_cols=100 Identities=14% Similarity=0.045 Sum_probs=58.4
Q ss_pred HhhhccCChHHHHHHHHHHHHh-cCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc-CCCccccccchhhH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVS-EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLELFDGSGFK 156 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~ 156 (651)
-.+..+.++++|..+-+..+.. ...-.+.-.++....+..+-..|-..|+.......+...+.. .+..+......+.+
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 3445678999998888776543 222222222333444445556667778877777777666554 34444444445555
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHH
Q 006303 157 LLKNECQRLLDSGEVEMFVGLMEVL 181 (651)
Q Consensus 157 ~l~~~~~~~~~~~~~~~A~~~~~~~ 181 (651)
.++. .|...+-++.|-.+..+.
T Consensus 214 ~LLr---~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 214 LLLR---NYLHNKLYDQADKLVSKS 235 (493)
T ss_pred HHHH---HHhhhHHHHHHHHHhhcc
Confidence 5555 444467778777766654
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.11 E-value=75 Score=31.96 Aligned_cols=98 Identities=14% Similarity=-0.026 Sum_probs=69.8
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCC----CccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA----DILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.+.++.|+.++.++++.. |+....+..-..++.+.+++..|+.=+..+... ...|..-..++.+.+.+.+|+..
T Consensus 17 ~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 688999999999998855 777777777778888889988888766555333 24444445566666777788888
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhc
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGIC 269 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (651)
|+.... +.|+..-....+.-|-+.
T Consensus 95 l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 95 LEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 877766 567766666666555433
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.80 E-value=1.8e+02 Score=22.62 Aligned_cols=82 Identities=10% Similarity=-0.027 Sum_probs=51.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHH
Q 006303 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (651)
-....++|..+.+-+...+. -...+--.-+..+.+.|+|++| +. .......||...|-++-....|-.+.+...+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll--~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LL--LPQCHCYPDLEPWAALCAWKLGLASALESRL 92 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HH--HHTTS--GGGHHHHHHHHHHCT-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HH--hcccCCCccHHHHHHHHHHhhccHHHHHHHH
Confidence 34567788888877776533 2222333334457788999998 22 2233446888889888888888888888888
Q ss_pred HHHHHCC
Q 006303 313 KNMQKLG 319 (651)
Q Consensus 313 ~~m~~~~ 319 (651)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 8887665
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.77 E-value=4e+02 Score=26.63 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=13.6
Q ss_pred HHHhhcCCHHHHHHHHHHHHhc
Q 006303 229 REFGKKRDLVSALRAYDASKKH 250 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~ 250 (651)
..+.+.+++..|.++|+.+...
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh
Confidence 3444566666666666666654
No 424
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.06 E-value=1e+02 Score=33.65 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 563 NVEGALQILKIMREDGMSPDVV--AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620 (651)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 620 (651)
..+.+.++-.-.....++|-.. +....|..+.+.+++..|..+-.++++.+-.|...-
T Consensus 1062 ~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1062 NLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred hHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 3444433333334445565433 445667788888888888888888887665555543
No 425
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.55 E-value=2e+02 Score=27.23 Aligned_cols=71 Identities=7% Similarity=0.180 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHH
Q 006303 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----------SKRLKQ 601 (651)
Q Consensus 532 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 601 (651)
-.++|+.+.+.++.|.-+.+..+--.+.+.=.+.+...+|+.+.. |..-|..|+..||. .|++.-
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 457889999999999999998888888899999999999999986 33337777776664 355555
Q ss_pred HHHHHH
Q 006303 602 AFSLFE 607 (651)
Q Consensus 602 A~~~~~ 607 (651)
-.++++
T Consensus 337 nmkLLQ 342 (370)
T KOG4567|consen 337 NMKLLQ 342 (370)
T ss_pred HHHHHh
Confidence 555444
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.80 E-value=64 Score=30.37 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=30.7
Q ss_pred CcHH-HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHH
Q 006303 546 PNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY 586 (651)
Q Consensus 546 p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 586 (651)
|+.. -|+.-|....+.||+++|+.++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4444 4678888888899999999999999888876444444
No 427
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.43 E-value=2.7e+02 Score=29.59 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH------HHHHHHHHHHHCCCCCCHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ------MALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
.|+.+|...|++..+.++++...... +| -+.=...+|..++...+.|.++ .+.+.+++.. +.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~-~~-~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN-KG-DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-cC-CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHH
Confidence 68888888888888888888776532 22 1233456777888888888653 3444444433 445778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.|+.+-...-+-....-++.+.+.
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHH
Confidence 877765554444444445555544
No 428
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.19 E-value=1.9e+02 Score=24.00 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=27.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 573 IMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYG 632 (651)
Q Consensus 573 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 632 (651)
.+.+.|++++..= ..++..+...++.-.|.++++++.+.+-..+..|....+..+...|
T Consensus 11 ~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444443321 1334444444444555555555555444444455444455544444
No 429
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=36.11 E-value=2.5e+02 Score=23.30 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc-cccHHHHHHHHHHHHcccC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKW-WQMALKVKEDMLSAGVTPNTITWSSL 404 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l 404 (651)
.+.++.-....++......+++.+..+...... ..+...|.+++.+.....- ---+..+|..|.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455555555556666666666655432110000 1222334444444433333 22333444444444444444444444
Q ss_pred HHHHH
Q 006303 405 INACA 409 (651)
Q Consensus 405 l~~~~ 409 (651)
|.++.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 44433
No 430
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.00 E-value=3.8e+02 Score=27.23 Aligned_cols=140 Identities=11% Similarity=0.004 Sum_probs=75.0
Q ss_pred ChHHHHHHhhhCCCCCccHHHHHHHH----------hhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHH
Q 006303 206 DVNLAIRYACIVPRADILFCNFVREF----------GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (651)
Q Consensus 206 ~~~~A~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 275 (651)
++++|..+++.+|.+......|-.+- +-.+.+++-+++++.+.+.|- +| ....-++.|.+.+++++|
T Consensus 29 d~~eav~y~k~~p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A 105 (480)
T TIGR01503 29 DLQDAVDYHKSIPAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEA 105 (480)
T ss_pred CHHHHHHHHHhCCccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHH
Confidence 45666666666665443333333322 123567788888888877542 22 444567888999999999
Q ss_pred HHHHHHHHhCC------Ccc---cHHHHHHHHHhhc------CChHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhc
Q 006303 276 RAIYEDLRSQN------VTL---NIYVFNSLMNVNA------HDLKFTLEVYKNMQKLGVMAD---MASYNILLKACCLA 337 (651)
Q Consensus 276 ~~~~~~~~~~g------~~~---~~~~~~~ll~~~~------~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~ 337 (651)
...+++-.+.| .+. .......++.... +--.++..+++.+...|+.-. ..+||. -|.+.
T Consensus 106 ~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~ 182 (480)
T TIGR01503 106 AVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPDARLLAEIILAGGFTSFEGGGISYNI---PYAKN 182 (480)
T ss_pred HHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCCcHHHHHHHHHHcCCCccCCCcceecc---ccCCC
Confidence 99888776532 211 1223333333211 123345666666666654322 334442 23333
Q ss_pred CCHHHHHHHHHHHH
Q 006303 338 GNTVLAQEIYGEVK 351 (651)
Q Consensus 338 g~~~~a~~~~~~~~ 351 (651)
=-+++++..|+.+.
T Consensus 183 vpLe~si~~Wqyvd 196 (480)
T TIGR01503 183 VTLEKSLEDWQYCD 196 (480)
T ss_pred CCHHHHHHHHHHHH
Confidence 34555555555443
No 431
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.92 E-value=3.8e+02 Score=25.25 Aligned_cols=136 Identities=16% Similarity=0.190 Sum_probs=75.9
Q ss_pred cccHHHHHHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHh-hhcCCccccHHH
Q 006303 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-EAKGVLKLDVFT 365 (651)
Q Consensus 288 ~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~ 365 (651)
+.|...+|.++.-.....++--+-+++..+. |-.--...+..+..-|++.++.+.+.+..++..+- ...| .+.|+..
T Consensus 78 kfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg-~KiDv~l 156 (412)
T COG5187 78 KFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG-LKIDVFL 156 (412)
T ss_pred ehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc-cchhhHH
Confidence 3455566666654443333333333333332 22334567778888999999999998887765541 1123 4444433
Q ss_pred H-HHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 366 Y-STIVKVFADAKWWQMALKVKEDMLSAGVTPNTI----TWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 366 ~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
. ..|.-.|....-.++-++..+.|.+.|...+.. +|..+- +....++.+|-.+|.+...
T Consensus 157 ~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 157 CKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2 223445555556778888888888887654432 332221 1223456666666666543
No 432
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.71 E-value=2.1e+02 Score=22.29 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 586 YTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
|..++.-|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777778888888888888877765
No 433
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.59 E-value=4e+02 Score=25.40 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=59.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 409 (651)
++....+.+++....+.+..+.. ...-...+..+...|+|..|++++....+. .. +..-|+.+ +.+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~----------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~-~~L- 169 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT----------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCV-RHL- 169 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHH-HHH-
Confidence 44555555555555555555543 223345566677888888888888776642 00 00001100 000
Q ss_pred hcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006303 410 NAGLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQFDRAFRLFR 457 (651)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 457 (651)
..++++-.....++.+.. ...|+..|..++.+|.-.|+...+.+-+.
T Consensus 170 -~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 170 -SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 011222223332222211 25688889999999988887766654443
No 434
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.76 E-value=1.3e+02 Score=30.53 Aligned_cols=129 Identities=11% Similarity=0.031 Sum_probs=69.9
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhH-HHhhhhHHHH-HhHHHHhhhhcChhHHHHHHHHHHH-------
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK-FASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNE------- 141 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~~~-~~~~~~~~~~g~~~~a~~~l~~~~~------- 141 (651)
+.+...-.+.+-..|++.+|..++...--.. .|.. .+.-+...++ ++++..+.+.|.+..+..+|.+.++
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 3333334445556799999988876432110 1111 1111123333 6667777888888888888887775
Q ss_pred cCCCcccc---ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 142 LGVAPLEL---FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 142 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
.|..|... ..+..+.++-+....+...|++..|.+.|.+.... ...++-.|..+..+|.
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 25555332 12223444444445555667777777777665542 2334445555555554
No 435
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.73 E-value=1.8e+02 Score=24.21 Aligned_cols=65 Identities=18% Similarity=0.100 Sum_probs=44.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (651)
++.+.+.+.|++++.. -..++..+.+.++.-.|.++++++.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3445566677765443 4567777787777788999999999887777666655555666665543
No 436
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.41 E-value=2.1e+02 Score=24.56 Aligned_cols=64 Identities=8% Similarity=0.029 Sum_probs=44.0
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006303 537 NEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQ 601 (651)
Q Consensus 537 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 601 (651)
+.+...|++++..-. .++..+...++.-.|.++++++.+.+..++..|.-.-+..+...|-+.+
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 345566777665544 3444444456667888999999888777777777777788888886543
No 437
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.37 E-value=1.7e+02 Score=20.34 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
+.|+...++.++..+++-.-.++++..+.++...|.. +..+|..-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3456666677777777777777777777777776642 55555555554444
No 438
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.16 E-value=7.3e+02 Score=27.69 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (651)
-++..+|.++..|++..+-+ ....++.....+-. ...-....++.|.+.+....+..++
T Consensus 626 ~~~~ihn~ll~lya~~~~~~-ll~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~ 684 (911)
T KOG2034|consen 626 TNPAIHNSLLHLYAKHERDD-LLLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLL 684 (911)
T ss_pred cCHHHHHHHHHHhhcCCccc-hHHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHH
Confidence 46777888888877655433 33333333321111 1222234566677666544333333
No 439
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.65 E-value=63 Score=22.39 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (651)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 594 (651)
....++.++..+++-.-.++++..+.++.+.|. .+..+|---++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 333444444444444444444445544444442 23444443333333
No 440
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=31.93 E-value=4.7e+02 Score=26.19 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI 590 (651)
Q Consensus 533 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 590 (651)
-+++.++.+..+.||.+.+..+...|.+.=-++-|-++|+-....| +...+...+
T Consensus 459 p~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdg---eeFlfr~~l 513 (586)
T KOG2223|consen 459 PKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDG---EEFLFRTAL 513 (586)
T ss_pred HHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecc---hHHHHHHHH
Confidence 3567777888899999999999999999999999999998887644 344444433
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=31.78 E-value=3.6e+02 Score=23.70 Aligned_cols=152 Identities=7% Similarity=-0.080 Sum_probs=84.6
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHH--HHHHHHHHHcCCCccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCV--VGVLKKLNELGVAPLELF 150 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a--~~~l~~~~~~~~~~~~~~ 150 (651)
....-+..|-..|+|.+--.+|-....-...+..+.. ...++..++.+.-+-..+ ...|.+....+++.+...
T Consensus 53 ~~~~eie~Ckek~DW~klg~ly~nv~~gce~~~dlq~-----~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~d 127 (233)
T PF14669_consen 53 SAVVEIEHCKEKGDWTKLGNLYINVKMGCEKFADLQR-----FCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVD 127 (233)
T ss_pred HHHHHHHHHhhhccHHHHhhHHhhHHhhcCCHHHHHH-----HHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhh
Confidence 3344456677789998888888777655445543321 122233333322211222 223333344344445544
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
-..+.++=+++...|.+..++.+..++++.+.+..+.-+ .++.+....+. .+.=...|.....
T Consensus 128 K~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft-------~LKGL~g~e~~----------asrCqivn~AaEi 190 (233)
T PF14669_consen 128 KTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFT-------SLKGLTGPEKL----------ASRCQIVNIAAEI 190 (233)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hccCccCcccc----------CchhhhHHHHHHH
Confidence 455555666666777778888889998888876443211 11111000000 0111556677888
Q ss_pred HhhcCCHHHHHHHHHH
Q 006303 231 FGKKRDLVSALRAYDA 246 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~ 246 (651)
+.+.|..+.|+.++++
T Consensus 191 FL~sgsidGA~~vLre 206 (233)
T PF14669_consen 191 FLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHcCCchHHHHHHhc
Confidence 9999999999999874
No 442
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.74 E-value=3.2e+02 Score=28.95 Aligned_cols=92 Identities=10% Similarity=-0.019 Sum_probs=46.8
Q ss_pred HHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHH
Q 006303 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (651)
Q Consensus 119 ~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (651)
.+..+.+..+|..++++|+.-... -|.+......-...-..++-|....+.|.|.+++++..+.. |..+..-..+.
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d--~~~~l~q~~~~ 435 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD--RQSPLCQLLML 435 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--cccHHHHHHHH
Confidence 344556667777777777765542 22111111111122233445555667777777777765533 33433334444
Q ss_pred HHHhcCCChHHHHHHh
Q 006303 199 QLCVNKPDVNLAIRYA 214 (651)
Q Consensus 199 ~~~~~~~~~~~A~~~~ 214 (651)
+.....+..++|+...
T Consensus 436 ~~~~~E~~Se~AL~~~ 451 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCL 451 (872)
T ss_pred HHHHHhcchHHHHHHH
Confidence 5555555555555543
No 443
>PRK10941 hypothetical protein; Provisional
Probab=31.71 E-value=4.4e+02 Score=24.76 Aligned_cols=80 Identities=13% Similarity=-0.016 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 006303 550 SWTILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITLLRA 627 (651)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~ 627 (651)
..+.+-.+|.+.++++.|.++.+.+... .| |+.-+.--.-.|.+.|.+..|..=++... ...-.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3466778899999999999999999984 45 45556666777999999999999888886 34455666666666666
Q ss_pred HHhc
Q 006303 628 RSRY 631 (651)
Q Consensus 628 ~~~~ 631 (651)
+...
T Consensus 261 l~~~ 264 (269)
T PRK10941 261 IEQK 264 (269)
T ss_pred Hhhc
Confidence 5443
No 444
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.59 E-value=5.9e+02 Score=26.16 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHH-------CCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 550 SWTILIDACGGSGNVEGALQILKIMRE-------DGMSPD-----------VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
.||.|...+.+.|.+..+..+|.+..+ .|++|. ..+||. .-.|...|++-.|.+.|.+...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH
Confidence 356777777777777777777766653 355552 234443 4457788888889888888875
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 006303 612 YQIQPNLVTYITLLRARSRY 631 (651)
Q Consensus 612 ~g~~p~~~~~~~l~~~~~~~ 631 (651)
. +.-++..|-.+..+|...
T Consensus 364 v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 364 V-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred H-HhcCcHHHHHHHHHHHHH
Confidence 3 567888888888888753
No 445
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.03 E-value=2.8e+02 Score=22.33 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=16.9
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcCCCc
Q 006303 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPV 188 (651)
Q Consensus 158 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 188 (651)
+++.|..|.+. .++..++|..|...++-.
T Consensus 68 yLkiWi~ya~~--~~dp~~if~~L~~~~IG~ 96 (125)
T smart00777 68 YLKIWLKYADN--CDEPRELFQFLYSKGIGT 96 (125)
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHCCcch
Confidence 45555555442 345677777777766543
No 446
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.25 E-value=6.6e+02 Score=26.36 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=49.5
Q ss_pred HHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-------------SPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (651)
.+.|+..+......++.. ..|++..|..+++++...|- .++......++.++. .|+.+.+++++
T Consensus 192 ~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 345666666666555544 35788888888877665431 123334445555555 48889999999
Q ss_pred HHHHHCCCCCCH
Q 006303 607 EEMKHYQIQPNL 618 (651)
Q Consensus 607 ~~m~~~g~~p~~ 618 (651)
++|...|..|..
T Consensus 269 ~~l~~~g~~~~~ 280 (509)
T PRK14958 269 TRLVEQGVDFSN 280 (509)
T ss_pred HHHHHcCCCHHH
Confidence 999988877753
No 447
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.16 E-value=4.4e+02 Score=24.20 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH---CCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHH
Q 006303 565 EGALQILKIMRE---DGMSPDVVAYTTAI-----KVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 565 ~~A~~~~~~~~~---~~~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~ 611 (651)
+.|.+.|++..+ ..++|...++-.++ --|-..|+.++|+++.+...+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 556666666543 22556544443332 234557899999888877653
No 448
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.05 E-value=4.7e+02 Score=25.34 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=71.3
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHh-cCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCC
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVS-EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~ 145 (651)
|......|..-+.-|-+..++..|...|..-++. ..+|+- +...+.+-+.+....|.+..|+.=....+. ..
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl-----navLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~ 149 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL-----NAVLYTNRAAAQLYLGNYRSALNDCSAALK--LK 149 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 4445667788888889999999999999887765 456652 233445555556677888888877777776 55
Q ss_pred ccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
|+. .-.+++.+..+....++++|....++.++
T Consensus 150 P~h------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 150 PTH------LKAYIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred cch------hhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 643 23445555555666788888887777644
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.75 E-value=3e+02 Score=22.18 Aligned_cols=43 Identities=23% Similarity=0.138 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 307 FTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGE 349 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (651)
.+.++|..|...|+-. -+.-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5566666665554322 345566666667777777777777654
No 450
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=29.23 E-value=5.4e+02 Score=24.96 Aligned_cols=75 Identities=7% Similarity=0.070 Sum_probs=44.0
Q ss_pred HcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-------------DVVAYTTAIKVCVRSKRLKQAFSLFE 607 (651)
Q Consensus 541 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (651)
+.|+..+......++... .|++.++...++.....+-.. .......++.+. ..|+..+|..++.
T Consensus 199 ~~~~~~~~~al~~l~~~~--~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai-~~~~~~~a~~~l~ 275 (337)
T PRK12402 199 AEGVDYDDDGLELIAYYA--GGDLRKAILTLQTAALAAGEITMEAAYEALGDVGTDEVIESLLDAA-EAGDFTDARKTLD 275 (337)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCCHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 345555555555555543 566666666665544321111 122333455544 4678999999999
Q ss_pred HHH-HCCCCCCH
Q 006303 608 EMK-HYQIQPNL 618 (651)
Q Consensus 608 ~m~-~~g~~p~~ 618 (651)
++. +.|..|..
T Consensus 276 ~l~~~~g~~~~~ 287 (337)
T PRK12402 276 DLLIDEGLSGGE 287 (337)
T ss_pred HHHHHcCCCHHH
Confidence 997 67877653
No 451
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.19 E-value=3.7e+02 Score=23.83 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA-YTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
.....+.+++.|...|+++.|.+.|.-++... ..|... |..=+..+.+.+......++++.|.
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 45567889999999999999999999998753 445554 4433445666665555557777775
No 452
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=28.89 E-value=4.6e+02 Score=27.57 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=63.2
Q ss_pred cccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006303 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (651)
Q Consensus 375 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 454 (651)
..|+...|...+.........-.-+....|.+...+.|...+|..++.+..... ...+-++-.+.++|.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356777777777776654322233445566777778888888888888877655 4455567778889999999999999
Q ss_pred HHHHhhhcc
Q 006303 455 LFRSWTLSK 463 (651)
Q Consensus 455 ~~~~~~~~~ 463 (651)
.|+...+..
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 999877654
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.89 E-value=3.3e+02 Score=23.38 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCCh
Q 006303 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564 (651)
Q Consensus 530 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 564 (651)
-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 42 lSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 42 ISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 35566666666655544444433344455555544
No 454
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=28.86 E-value=5.5e+02 Score=24.92 Aligned_cols=127 Identities=9% Similarity=-0.037 Sum_probs=0.0
Q ss_pred HhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l 158 (651)
..+-..+-..++..++++....+. |+.|..--...++..... ....-+|.....+|+-+.. +.|+++....---.+
T Consensus 264 r~lW~r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~-~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAl 339 (415)
T COG4941 264 RSLWDRALIDEGLALLDRALASRR-PGPYQLQAAIAALHARAR-RAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVAL 339 (415)
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHH
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh
Q 006303 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI 216 (651)
Q Consensus 159 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (651)
.. ..-.+.++...+-+...+--.....++..-+..+.+.|...+|...|++
T Consensus 340 a~-------~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydr 390 (415)
T COG4941 340 AM-------REGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDR 390 (415)
T ss_pred HH-------hhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHH
No 455
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.84 E-value=5.3e+02 Score=24.78 Aligned_cols=19 Identities=16% Similarity=-0.101 Sum_probs=13.1
Q ss_pred hhcchHHHHHHHHHHHHhc
Q 006303 166 LDSGEVEMFVGLMEVLEEF 184 (651)
Q Consensus 166 ~~~~~~~~A~~~~~~~~~~ 184 (651)
+..+-.+.|.+.|+.....
T Consensus 141 ~~~~~~~~a~~~~~~~~~~ 159 (324)
T PF11838_consen 141 GDPECVAEARELFKAWLDG 159 (324)
T ss_dssp T-HHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHhcC
Confidence 4455577888888888774
No 456
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.78 E-value=2.8e+02 Score=21.53 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCc
Q 006303 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVT 288 (651)
Q Consensus 225 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~g~~ 288 (651)
..++..|...|+.++|...+.++... .-.......++..+... ..-+.+..++..+...+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 34666777778888888888776431 01122233333333333 2233455566666655543
No 457
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=7.6e+02 Score=26.56 Aligned_cols=139 Identities=10% Similarity=0.018 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHH--Hhh--cHHHHHHHHHHHHHcCC---CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH
Q 006303 512 KPTTTTYNILMKA--CCT--DYYRVKALMNEMRTVGL---SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (651)
Q Consensus 512 ~~~~~~~~~ll~~--~~~--~~~~a~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 584 (651)
++++..+.++--+ +++ +.+-+..+++.+.+++- .-.-.-|-.|.-+....|+-+.+..+.+-....+ .|=..
T Consensus 502 ~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~-~~~~~ 580 (878)
T KOG2005|consen 502 PMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIE-GPIRK 580 (878)
T ss_pred chhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhh-hHHHH
Confidence 4556666665444 233 66777777766655432 2233345566666666666666666666655532 23344
Q ss_pred HHHHHHHHHHhcC--CHHHHH--HHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Q 006303 585 AYTTAIKVCVRSK--RLKQAF--SLFEEMKHYQIQPNLV-TYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (651)
Q Consensus 585 ~~~~li~~~~~~g--~~~~A~--~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~~g 651 (651)
..+.++..|+-.| +.-... .+....-+..-.++.. -+..+--++...|+--.++-.++.|.+|..-|
T Consensus 581 ~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yg 652 (878)
T KOG2005|consen 581 HESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYG 652 (878)
T ss_pred HHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcC
Confidence 5566777666654 443332 2222221222222221 16666678888888777777888888887654
No 458
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.44 E-value=8.1e+02 Score=26.78 Aligned_cols=201 Identities=14% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc---------CCh
Q 006303 238 VSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA---------HDL 305 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~---------~~~ 305 (651)
++--..+++|..+--.|+ ..+...++-.|....+++..+++.+.+....-..+...-..+--.|+ |+.
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHH---------hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc
Q 006303 306 KFTLEVYKNMQKLGVMADMASYNILLKACC---------LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (651)
+.|+...-.|.+..-+..+..|....+.|- ..+..+.|.+.|++.-+ +.|+...--.+...+...
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe------veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE------VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc------cCchhhccccHHHHHHHh
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006303 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
|..=+--.-++.+--. |-..+.+.|..+...++|+-. ..+.+-.-.+++.+|.+.-
T Consensus 334 G~~Fens~Elq~Igmk-----------Ln~LlgrKG~leklq~YWdV~-------------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 334 GEHFENSLELQQIGMK-----------LNSLLGRKGALEKLQEYWDVA-------------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhhccchHHHHHHHHH-----------HHHHhhccchHHHHHHHHhHH-------------HhhhhhhhccCHHHHHHHH
Q ss_pred HHhhhccccccc
Q 006303 457 RSWTLSKTQVAL 468 (651)
Q Consensus 457 ~~~~~~~~~~~~ 468 (651)
+.|-+.+.+.+.
T Consensus 390 e~mfKLk~P~WY 401 (1226)
T KOG4279|consen 390 EMMFKLKPPVWY 401 (1226)
T ss_pred HHHhccCCceeh
No 459
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.11 E-value=5e+02 Score=24.24 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=61.3
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHH-HHHHHHHHHHHhhhcC-CccccHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 006303 312 YKNMQKLGVMADMASYNILLKACCLAGNTV-LAQEIYGEVKHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (651)
Q Consensus 312 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 389 (651)
++-+.+.+.+.|......++..+...+.-+ +-.++.+.+.+..+.| .-.-+......+...|.+.|++.+|...|-.-
T Consensus 37 iev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 37 IEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 333334455555555555555554443221 2333334443332112 12235667788888889999988888766321
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 390 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
-.++...+..++..+...|...++ +...-..+ --|.-.++...|...+....+.
T Consensus 117 ----~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaV-L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 117 ----TDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAV-LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHH-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----CChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence 122333333344433333433332 22222222 2355568888888888776644
No 460
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=28.07 E-value=5e+02 Score=24.23 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMKHY-QIQP-----NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~~g 651 (651)
.++.-|.+.|+.+.|-.++--+... +... +...-..++......|+++-+.++.+.+..+.++|
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 4556666677777776666555532 2222 34445566677777888888888888887776654
No 461
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=27.88 E-value=8.4e+02 Score=26.77 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=42.9
Q ss_pred HcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG---M----------SPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (651)
Q Consensus 541 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~----------~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (651)
..|+..+......++... .|++..+..+++++...| + ..+......++.++.. |+...++++++
T Consensus 193 kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~ 269 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQ 269 (709)
T ss_pred HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 345555666555555543 467777777776655422 1 1123334445555543 77788888888
Q ss_pred HHHHCCCCCC
Q 006303 608 EMKHYQIQPN 617 (651)
Q Consensus 608 ~m~~~g~~p~ 617 (651)
+|...|+.+.
T Consensus 270 ~L~~~G~d~~ 279 (709)
T PRK08691 270 EMAACAVGFD 279 (709)
T ss_pred HHHHhCCCHH
Confidence 8877776544
No 462
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.87 E-value=3.1e+02 Score=22.77 Aligned_cols=63 Identities=8% Similarity=0.095 Sum_probs=37.9
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhc-CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 537 NEMRTVGLSPNHISWTILIDACGG-SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600 (651)
Q Consensus 537 ~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 600 (651)
+.+.+.|++++..-.. ++..+.. .+..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 6 ~~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445566665544332 3333333 3456677888888877766666766666667777776543
No 463
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.58 E-value=4.7e+02 Score=26.31 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhc--C----CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 225 CNFVREFGKKRDLVSALRAYDASKKH--L----SSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (651)
Q Consensus 225 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 283 (651)
..|++.++-.||+..|+++++.+.-. + +.+ .+.++-.+.-+|...+++.+|+++|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888899999999998866421 1 111 35567778888899999999999998764
No 464
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=27.43 E-value=3.2e+02 Score=21.82 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC-CCCC-HHHHHHHH----HHHHhcCCHHHHHHHHHHHHHHHh
Q 006303 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMK----HYQ-IQPN-LVTYITLL----RARSRYGSLHEVQQCLAVYQDMWK 649 (651)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g-~~p~-~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~m~~ 649 (651)
...+..|-.++...|++++++.--+... +.| +.-| -..|...+ .++-..|+.++|.+.+++--+|+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 3344445555555666555444333332 011 1222 23333332 256667888888888888888874
No 465
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.09 E-value=58 Score=31.14 Aligned_cols=44 Identities=18% Similarity=0.097 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (651)
.|.++.|++.|...+..+ |+....+..-.+++.+..++..|.+-
T Consensus 127 ~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred CcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhh
Confidence 588888888887776644 44444444444445555555554443
No 466
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.67 E-value=2.7e+02 Score=20.71 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=15.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 595 RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (651)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 635 (651)
..|+.+.|.+++..+. .| |+ -|..++.++...|..+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchh
Confidence 3444555555555554 22 22 2334444444444433
No 467
>PRK10304 ferritin; Provisional
Probab=26.47 E-value=4.1e+02 Score=22.70 Aligned_cols=105 Identities=10% Similarity=0.125 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHH
Q 006303 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (651)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 384 (651)
.+.|.++++.+...|..|.......- ...+....++|+...+.. .--+..++.++..+.+.+|+... .
T Consensus 51 ~~HA~kl~~~i~~rgg~~~~~~i~~p------~~~~~s~~e~~~~~l~~E-----~~vt~~i~~l~~~A~~~~D~~t~-~ 118 (165)
T PRK10304 51 MTHMQRLFDYLTDTGNLPRINTVESP------FAEYSSLDELFQETYKHE-----QLITQKINELAHAAMTNQDYPTF-N 118 (165)
T ss_pred HHHHHHHHHHHHHcCCCeeeCCCCCC------ccccCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCHhHH-H
Confidence 45677777777776655543221100 113333444555444422 12344566666666666665432 2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (651)
Q Consensus 385 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 422 (651)
+++.+++..+. .......++.-....|+...+.-.++
T Consensus 119 fl~~fl~EQve-Ee~~~~~l~~~l~~~~~~g~~~y~~D 155 (165)
T PRK10304 119 FLQWYVSEQHE-EEKLFKSIIDKLSLAGKSGEGLYFID 155 (165)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhCCCcchHHHHh
Confidence 33344332221 23334444444444443333333333
No 468
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.17 E-value=3e+02 Score=21.59 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=21.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (651)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 628 (651)
+|+-+.++...++|+++++-|.+.| ..+...-+.|-..+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455556666666666666666655 44444444443333
No 469
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.92 E-value=4.1e+02 Score=25.37 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=16.8
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 391 (651)
+.|.-..+.-+.-.+.+.=.+.+++.+|+.+..
T Consensus 274 i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 274 IHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred CCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 445544444444444555555555555555554
No 470
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.74 E-value=8.7e+02 Score=26.25 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=47.2
Q ss_pred HHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-------------SPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (651)
.+.|+..+......++.. ..|++..+..+++++...|- .++......++.++. .|+...+++++
T Consensus 197 ~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~-~~d~~~al~~l 273 (618)
T PRK14951 197 AAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA-QGDGRTVVETA 273 (618)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 445666666666655553 44777777777776554321 123334445555555 47888888888
Q ss_pred HHHHHCCCCCCH
Q 006303 607 EEMKHYQIQPNL 618 (651)
Q Consensus 607 ~~m~~~g~~p~~ 618 (651)
++|.+.|..|..
T Consensus 274 ~~l~~~G~~~~~ 285 (618)
T PRK14951 274 DELRLNGLSAAS 285 (618)
T ss_pred HHHHHcCCCHHH
Confidence 888887766553
No 471
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.72 E-value=2.8e+02 Score=20.55 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 006303 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (651)
Q Consensus 534 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (651)
++|+-....|+..|+.+|..+++...-+=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555554444444444444444443
No 472
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.67 E-value=1.5e+02 Score=23.28 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=30.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 554 LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600 (651)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 600 (651)
++..+...+..-.|.++++++.+.+..++..|.-..++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44455555556667777777777666666666666667777776544
No 473
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.38 E-value=6.4e+02 Score=24.60 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 409 (651)
..|-.++......|.+++++.+|++++..|..|-...-..+++.+.
T Consensus 141 KYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 141 KYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3577778888888888888888888888888877666666666654
No 474
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=25.00 E-value=1.1e+03 Score=27.16 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 006303 327 YNILLKACCLAG--NTVLAQEIYGEVKH 352 (651)
Q Consensus 327 ~~~ll~~~~~~g--~~~~a~~~~~~~~~ 352 (651)
+..++.+|++.+ ++++|+....++.+
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 445666666666 66666666666653
No 475
>PRK13342 recombination factor protein RarA; Reviewed
Probab=24.97 E-value=7.3e+02 Score=25.12 Aligned_cols=55 Identities=25% Similarity=0.224 Sum_probs=34.5
Q ss_pred ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 006303 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-----VEQAMHLFEEMLQAGCE 430 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 430 (651)
..+.+.|+..+..|.+.|..|....-..++.++-.-|. ...|...++....-|.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 46788888888888888877766665555555544442 23344455555555643
No 476
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=24.69 E-value=3.4e+02 Score=21.52 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 006303 587 TTAIKVCVRSKRLKQAFSLFE 607 (651)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~ 607 (651)
...+..+...|+++.|.++++
T Consensus 74 ~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 74 EQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 344444555555555555554
No 477
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.67 E-value=4.1e+02 Score=22.07 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=28.5
Q ss_pred cccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCCh
Q 006303 505 FDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564 (651)
Q Consensus 505 ~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 564 (651)
.++..|++++..-...+-.... +..-.|.++++.+.+.+...+..|.=--++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444555555433322222221 13446666666666665554555443444555555543
No 478
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=24.32 E-value=2.3e+02 Score=25.72 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=22.5
Q ss_pred hhccCChHHHHHHHHHHHHhc-CChhHHH
Q 006303 81 LAKDGRLEEFAMIVESVVVSE-GNVSKFA 108 (651)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~-~~p~~~~ 108 (651)
+...|+++.|+++.+.+++.| .-|+.|.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~ 121 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFR 121 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCcccc
Confidence 356799999999999999997 4566544
No 479
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=24.21 E-value=6.6e+02 Score=26.51 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=93.4
Q ss_pred ccHHHHHHHHHhhcC----ChHHHHHHHHHHHHCCCCCCHHhHHHH--HHHHH-hcCCHHHHHHHHHHHHHhhhcCCccc
Q 006303 289 LNIYVFNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNIL--LKACC-LAGNTVLAQEIYGEVKHLEAKGVLKL 361 (651)
Q Consensus 289 ~~~~~~~~ll~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (651)
|+..+...++...+. ..+-+-.++..|.. |+...|.+| ...|- -.|+...|...+...... .|
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~------~p 638 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNL------AP 638 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhcc------Ch
Confidence 566666666655443 44556666666654 343333322 23333 458888888888776642 22
Q ss_pred --cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 362 --DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 362 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
..+....|...+.+.|...+|..++.+.+... .....++..+.+++.-..+++.|++.|++..+.. +.++..-+.|
T Consensus 639 ~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l 716 (886)
T KOG4507|consen 639 LQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSL 716 (886)
T ss_pred hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHH
Confidence 22334556677777788888888888877654 3356778888999999999999999999998875 3455555555
Q ss_pred HHHHH
Q 006303 440 LQACV 444 (651)
Q Consensus 440 l~~~~ 444 (651)
...-|
T Consensus 717 ~~i~c 721 (886)
T KOG4507|consen 717 KLIRC 721 (886)
T ss_pred HHHHH
Confidence 55433
No 480
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.88 E-value=7.4e+02 Score=24.80 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=50.5
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
...+..+...|...|+++.|++.|-+...=+..-.+ ..+++-+++....-.|+|.++.....+..+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh-----vInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH-----VINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH-----HHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 557788889999999999999999986554433332 256666778888889999988888877776
No 481
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.68 E-value=5.6e+02 Score=23.26 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=58.1
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP---NTITW--SSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 433 (651)
+.++..-+|.|+--|.-...+.+|-..|.. +.|+.| |..++ ..-|......|+.+.|++....+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 456666777777777777777776666644 334444 33332 23455667788888888888777544334443
Q ss_pred HHHHHHHH----HHHhcCChhHHHHHHHHh
Q 006303 434 QCCNILLQ----ACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 434 ~~~~~ll~----~~~~~g~~~~a~~~~~~~ 459 (651)
..+-.+.. -..+.|..++|++..+.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 32222222 134667777777777653
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=23.67 E-value=1.2e+02 Score=24.10 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=24.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (651)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 633 (651)
++..+...+..-.|.++++.|.+.+...+..|....+..+...|-
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 444444444455566666666666656666666566666555553
No 483
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.41 E-value=1.2e+02 Score=29.08 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=58.5
Q ss_pred cCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHH-hHHHHHHHHHhcCCHHHHHH
Q 006303 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGICGDYMKSRA 277 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 277 (651)
..|++++|+..|... |+....|..-.+.+.+.++...|++=++...+ +.||.. -|-.-..+-...|+|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 467788888877654 33335555566777788888888888777766 445432 23333344455688888888
Q ss_pred HHHHHHhCCCcccHHHH
Q 006303 278 IYEDLRSQNVTLNIYVF 294 (651)
Q Consensus 278 ~~~~~~~~g~~~~~~~~ 294 (651)
.|....+.++.+....|
T Consensus 204 dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 204 DLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHhccccHHHHHH
Confidence 88888877766544433
No 484
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=23.36 E-value=1.9e+02 Score=29.26 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=63.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH-HHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY-STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
+.+.+.++++.|..++.++.+ ..||-..| ..=..++.+.+++..|+.=+.++++.... -...|.-=..+|.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~------ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE------LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMA 84 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh------cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHh
Confidence 344556778888888888877 45654443 33346777888888888777777665311 22233333445555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
.+.+.+|+..|+..... .|+..-....+.-|-+
T Consensus 85 l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKL--APNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHHH
Confidence 66666777666666543 5666666666665544
No 485
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.01 E-value=7.2e+02 Score=24.30 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 564 VEGALQILKIMREDGMSPDV----VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (651)
Q Consensus 564 ~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 629 (651)
.++...+++.++.. -|+. .-|-++.......|.++.++.+|++.+..|.+|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34666666666653 3443 3566777777888888888888888888888888777777777665
No 486
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.63 E-value=5.7e+02 Score=23.01 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=37.7
Q ss_pred HHHHHHHHHcccC-------HHHHHHHHHHHHHCCCCC----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 366 YSTIVKVFADAKW-------WQMALKVKEDMLSAGVTP----NT-ITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 366 ~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~~----~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
+-.+...|-..|+ ...|.+.|.+..+..-.| +. .....+.....+.|+.++|.+.|.++...+
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3344445555555 345566666665432221 22 333345566778899999999999988765
No 487
>PHA02875 ankyrin repeat protein; Provisional
Probab=22.56 E-value=4.1e+02 Score=26.79 Aligned_cols=74 Identities=16% Similarity=-0.020 Sum_probs=35.6
Q ss_pred cCCChHHHHHHhhhCCC-C--CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHH--hHHHHHHHHHhcCCHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPR-A--DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY--ICRTIIDVCGICGDYMKSRA 277 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~ 277 (651)
..|+.+.+..+++.-.. + .....+.+...++.|+.+ +.+.+.+.|..|+.. ....-+...+..|+.+.+..
T Consensus 11 ~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 11 LFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEE 86 (413)
T ss_pred HhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence 45666666666554211 1 112334555556667764 333444555544322 11223444556677755544
Q ss_pred HHH
Q 006303 278 IYE 280 (651)
Q Consensus 278 ~~~ 280 (651)
+++
T Consensus 87 Ll~ 89 (413)
T PHA02875 87 LLD 89 (413)
T ss_pred HHH
Confidence 443
No 488
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.52 E-value=7e+02 Score=24.01 Aligned_cols=110 Identities=8% Similarity=0.021 Sum_probs=68.8
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccccc
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~ 151 (651)
.....|+..|-+.++|++|-+.+......+. |..+........+..+.+.|...++..+|.....+..=.-.. ..
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg-~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~----~~ 178 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTG-QKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE----SS 178 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccc-hhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc----cc
Confidence 3456678889999999999999988766542 233333345666788999999999999999888875432111 12
Q ss_pred chhhHHHHHHHHHH--hhcchHHHHHHHHHHHHhcCC
Q 006303 152 GSGFKLLKNECQRL--LDSGEVEMFVGLMEVLEEFRL 186 (651)
Q Consensus 152 ~~~~~~l~~~~~~~--~~~~~~~~A~~~~~~~~~~~~ 186 (651)
+.-+.+-.++|.+- -..+++-+|-.-|-++....+
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki 215 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKI 215 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23444445544432 113455555555545554443
No 489
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=22.11 E-value=1.8e+02 Score=17.13 Aligned_cols=30 Identities=7% Similarity=0.212 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 006303 621 YITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (651)
Q Consensus 621 ~~~l~~~~~~~g~~~~a~~~~~~~~~m~~~ 650 (651)
-..+..++.++...++.++.+.+++++.++
T Consensus 4 ~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~ 33 (35)
T PF14852_consen 4 QFNYAWGLVKSNNREDQQEGIALLEELYRD 33 (35)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 345667888899988889999998887654
No 490
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.91 E-value=3.2e+02 Score=19.84 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (651)
++++-+.++.-.++|+++++-|.+.| ..+..
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 34455555556666666666666554 33433
No 491
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=21.70 E-value=3.1e+02 Score=19.53 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=32.5
Q ss_pred hccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHH
Q 006303 82 AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 133 (651)
..+|+.+.+.+++++.++.|..|..+..-+...++..++..+ ..|.+.-+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~w-~~~~~~v~~ 62 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGELW-EEGEISVAQ 62 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHHH-HTTSS-HHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hCCCccHHH
Confidence 346888999999999999988887765554455554444433 345444333
No 492
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=21.67 E-value=1.4e+02 Score=28.94 Aligned_cols=9 Identities=56% Similarity=0.505 Sum_probs=3.6
Q ss_pred cCCCCCcch
Q 006303 6 GSSSSSSSA 14 (651)
Q Consensus 6 ~~~~~~~~~ 14 (651)
.|++.|++.
T Consensus 499 ~~~~~s~~~ 507 (563)
T KOG1785|consen 499 NSSQTSSSG 507 (563)
T ss_pred CCCCCCCCC
Confidence 344444333
No 493
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.51 E-value=2.8e+02 Score=30.58 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=35.4
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCC
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 218 (651)
.|+.+.|++...+ .++...|..|+..-..+|+..-|+..|++..
T Consensus 656 ~gnle~ale~akk-------ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 656 CGNLEVALEAAKK-------LDDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred cCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 7888888887765 3456779999999899999999988887753
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.47 E-value=2.3e+02 Score=22.19 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChH
Q 006303 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 565 (651)
.-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 3456666777766655555555544555555555543
No 495
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=21.46 E-value=1e+02 Score=28.49 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 006303 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (651)
Q Consensus 269 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~ 320 (651)
.-+|+..+.+++..++. .|+..|=+.+|-......++..+.+++|...|+
T Consensus 193 ~A~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gv 242 (306)
T COG0320 193 GATYERSLSLLERAKEL--GPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGV 242 (306)
T ss_pred CCcHHHHHHHHHHHHHh--CCCcccccceeeecCCcHHHHHHHHHHHHHcCC
Confidence 34677777777777665 466777777777777777777777777777664
No 496
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.40 E-value=5.7e+02 Score=22.55 Aligned_cols=77 Identities=10% Similarity=0.004 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHH-HHHcccC--HHH
Q 006303 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK-VFADAKW--WQM 381 (651)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~--~~~ 381 (651)
-++++++-.++.. +...+-.....|++++|.+-++.+.+.-+. ++--...|..+.. +++.++. +-+
T Consensus 19 REE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~--Lk~~l~~~pel~~ag~~~~a~QEyvE 87 (204)
T COG2178 19 REEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEK--LKRLLAGFPELYFAGFVTTALQEYVE 87 (204)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHhhcchHHHHHH
Confidence 3555555555543 333444455667888888777776553211 1222334555544 5555543 556
Q ss_pred HHHHHHHHHHC
Q 006303 382 ALKVKEDMLSA 392 (651)
Q Consensus 382 a~~~~~~m~~~ 392 (651)
|..++..+...
T Consensus 88 A~~l~~~l~~~ 98 (204)
T COG2178 88 ATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHhcC
Confidence 66666666544
No 497
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=21.38 E-value=1.1e+03 Score=25.90 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-------------IQPNLVTYITLLRARSRYGSLHEVQQCLAV 643 (651)
Q Consensus 577 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 643 (651)
.|+..+......++... .|+...|+.+++++...| -.++......++.++.. |+... ++++
T Consensus 194 Egi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~---al~~ 267 (709)
T PRK08691 194 EKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAA---LLAK 267 (709)
T ss_pred cCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHH---HHHH
Confidence 46666666655555443 477777777776655322 12344456667777665 56554 5668
Q ss_pred HHHHHhcC
Q 006303 644 YQDMWKAG 651 (651)
Q Consensus 644 ~~~m~~~g 651 (651)
+++|.+.|
T Consensus 268 l~~L~~~G 275 (709)
T PRK08691 268 AQEMAACA 275 (709)
T ss_pred HHHHHHhC
Confidence 88877765
No 498
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=21.30 E-value=70 Score=35.85 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=10.5
Q ss_pred CCCCCCCCCcCCCCCCCCCCCC
Q 006303 29 PNKHPVTKLFPLASSSSLSSIP 50 (651)
Q Consensus 29 ~~~~p~~~~~~~~~~~~~~~~~ 50 (651)
|+|+|+|+..-|++.|++++.|
T Consensus 9 ppppppppg~epps~pppPppP 30 (2365)
T COG5178 9 PPPPPPPPGFEPPSQPPPPPPP 30 (2365)
T ss_pred CcccccCCCCCCCCCCCCccCC
Confidence 4444555555454444444443
No 499
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.92 E-value=2.9e+02 Score=18.91 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHH
Q 006303 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136 (651)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l 136 (651)
+..+-..|++=+|-+++|.++.. .|..-...+-.-+.........+.|+...|..++
T Consensus 6 ~~~l~n~g~f~EaHEvlE~~W~~--~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 6 GIELFNAGDFFEAHEVLEELWKA--APGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCC--T-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHcCCCHHHhHHHHHHHHHH--CCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
No 500
>PRK14700 recombination factor protein RarA; Provisional
Probab=20.91 E-value=7.4e+02 Score=23.68 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred ccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhcC------------------------CC
Q 006303 510 SFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNH--ISWTILIDACGGS------------------------GN 563 (651)
Q Consensus 510 ~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~------------------------g~ 563 (651)
.+..+......++..+.+|...|+.+++.+.......+. .+...+-....+. .|
T Consensus 62 ~~~i~~~al~~ia~~a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSD 141 (300)
T PRK14700 62 KFKIDDGLYNAMHNYNEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTD 141 (300)
T ss_pred CCCcCHHHHHHHHHhcCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCC
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006303 564 VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSK-----RLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQ 638 (651)
Q Consensus 564 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 638 (651)
.+.|+-++.+|++.|-.|....=..++.+.-.-| -...|...++.....|++--.......+-.++.+-+-..+-
T Consensus 142 pDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y 221 (300)
T PRK14700 142 PDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACY 221 (300)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHH
Q ss_pred HHHHHHHHHHhcC
Q 006303 639 QCLAVYQDMWKAG 651 (651)
Q Consensus 639 ~~~~~~~~m~~~g 651 (651)
.++..-.+.+++|
T Consensus 222 ~A~~~A~~~v~~~ 234 (300)
T PRK14700 222 KALAQAQQLVKSL 234 (300)
T ss_pred HHHHHHHHHHHhc
Done!