Query 006303
Match_columns 651
No_of_seqs 537 out of 3573
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 21:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.9E-36 2E-40 319.3 44.5 460 114-645 85-577 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.4E-36 1.5E-40 320.3 39.7 483 67-628 80-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 4.1E-29 1.4E-33 254.2 25.3 188 364-631 27-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.3E-28 1.1E-32 247.5 25.6 204 239-446 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 3.6E-24 1.2E-28 214.8 46.4 294 77-460 5-298 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-24 1.1E-28 215.1 45.4 370 166-632 10-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.6E-20 5.6E-25 196.0 37.1 443 71-619 6-483 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.5E-20 1.2E-24 193.4 36.5 430 159-645 10-476 (514)
9 3fp2_A TPR repeat-containing p 99.9 4.5E-20 1.5E-24 193.8 37.3 430 113-612 25-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.7E-19 5.8E-24 184.8 38.6 335 59-441 15-371 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 2.2E-19 7.6E-24 183.9 38.1 370 188-636 23-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.8E-18 9.5E-23 180.1 45.0 431 70-577 24-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 9.1E-17 3.1E-21 158.9 36.2 328 71-445 3-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 9.5E-16 3.3E-20 151.5 40.5 312 222-628 4-350 (359)
15 3hym_B Cell division cycle pro 99.8 7.4E-16 2.5E-20 150.4 33.3 303 217-635 18-322 (330)
16 2xm6_A Protein corresponding t 99.8 4.4E-14 1.5E-18 145.7 48.0 347 190-614 38-434 (490)
17 1xi4_A Clathrin heavy chain; a 99.8 1.6E-14 5.3E-19 155.9 45.3 377 117-638 989-1375(1630)
18 1xi4_A Clathrin heavy chain; a 99.8 5.4E-14 1.8E-18 151.8 48.7 406 70-597 984-1415(1630)
19 2ooe_A Cleavage stimulation fa 99.8 1.7E-14 5.9E-19 150.4 44.0 404 188-646 10-491 (530)
20 2ooe_A Cleavage stimulation fa 99.8 1.5E-14 5.3E-19 150.8 43.0 438 61-611 4-491 (530)
21 1fch_A Peroxisomal targeting s 99.8 2.5E-16 8.6E-21 156.4 27.1 282 169-459 39-356 (368)
22 3hym_B Cell division cycle pro 99.8 1.4E-15 4.7E-20 148.4 30.6 281 162-449 29-321 (330)
23 2xm6_A Protein corresponding t 99.7 3.1E-13 1.1E-17 139.4 48.9 345 219-644 37-429 (490)
24 4eqf_A PEX5-related protein; a 99.7 5.5E-16 1.9E-20 153.7 26.8 264 222-608 66-352 (365)
25 1fch_A Peroxisomal targeting s 99.7 1.4E-15 4.8E-20 151.0 26.8 150 410-641 193-353 (368)
26 3spa_A Mtrpol, DNA-directed RN 99.7 5.6E-18 1.9E-22 176.6 9.6 119 430-592 124-245 (1134)
27 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-17 7.2E-22 172.4 11.0 124 322-446 125-249 (1134)
28 1b89_A Protein (clathrin heavy 99.7 4.9E-16 1.7E-20 150.2 18.7 235 168-444 16-252 (449)
29 4g1t_A Interferon-induced prot 99.7 2.3E-14 7.9E-19 147.5 32.4 364 70-463 50-460 (472)
30 4eqf_A PEX5-related protein; a 99.7 3.8E-15 1.3E-19 147.6 24.3 256 194-458 68-352 (365)
31 3cv0_A Peroxisome targeting si 99.7 1.8E-14 6.2E-19 140.2 28.7 264 222-609 22-312 (327)
32 3cv0_A Peroxisome targeting si 99.7 8.4E-15 2.9E-19 142.6 25.8 234 219-461 53-314 (327)
33 3mkr_A Coatomer subunit epsilo 99.7 2.6E-14 9E-19 135.6 27.6 251 82-392 10-264 (291)
34 3mkr_A Coatomer subunit epsilo 99.7 8.6E-14 2.9E-18 132.1 27.6 268 168-456 12-288 (291)
35 4g1t_A Interferon-induced prot 99.6 3.8E-13 1.3E-17 138.4 34.3 332 222-621 95-469 (472)
36 1b89_A Protein (clathrin heavy 99.6 1.2E-15 4.1E-20 147.5 14.3 313 203-643 15-337 (449)
37 2pl2_A Hypothetical conserved 99.6 3.2E-13 1.1E-17 122.3 22.5 201 217-460 1-212 (217)
38 3uq3_A Heat shock protein STI1 99.5 2.7E-12 9.2E-17 119.9 25.8 223 222-462 6-236 (258)
39 2h6f_A Protein farnesyltransfe 99.5 5.3E-13 1.8E-17 130.9 21.2 247 71-374 97-364 (382)
40 3uq3_A Heat shock protein STI1 99.5 9E-12 3.1E-16 116.3 27.4 222 324-610 5-234 (258)
41 2pl2_A Hypothetical conserved 99.5 2.4E-12 8.1E-17 116.5 22.5 208 360-642 2-209 (217)
42 3e4b_A ALGK; tetratricopeptide 99.5 1.3E-11 4.5E-16 125.1 29.2 271 164-459 12-313 (452)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 6E-13 2E-17 125.8 17.1 243 168-456 18-269 (275)
44 2ho1_A Type 4 fimbrial biogene 99.5 3.8E-12 1.3E-16 118.5 21.7 202 67-285 33-238 (252)
45 3u4t_A TPR repeat-containing p 99.5 1.2E-11 4.3E-16 116.5 25.5 245 323-624 2-261 (272)
46 1ouv_A Conserved hypothetical 99.5 8.5E-11 2.9E-15 110.8 30.6 222 221-464 6-253 (273)
47 3u4t_A TPR repeat-containing p 99.5 2E-11 7E-16 115.0 25.4 225 160-392 8-250 (272)
48 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.3E-12 8E-17 121.7 18.9 220 123-352 15-243 (275)
49 2ho1_A Type 4 fimbrial biogene 99.5 3.4E-11 1.2E-15 112.0 26.5 208 324-621 37-245 (252)
50 1ouv_A Conserved hypothetical 99.5 5E-11 1.7E-15 112.4 27.4 219 191-428 6-252 (273)
51 2vq2_A PILW, putative fimbrial 99.5 5.3E-11 1.8E-15 108.4 26.4 211 323-622 7-219 (225)
52 3sf4_A G-protein-signaling mod 99.4 4E-12 1.4E-16 127.7 20.5 319 71-450 9-364 (406)
53 2vq2_A PILW, putative fimbrial 99.4 3.1E-11 1.1E-15 110.0 24.7 198 223-427 10-211 (225)
54 2h6f_A Protein farnesyltransfe 99.4 1.7E-11 6E-16 120.2 24.2 215 219-444 129-364 (382)
55 3e4b_A ALGK; tetratricopeptide 99.4 4.7E-11 1.6E-15 121.0 27.9 307 118-461 8-350 (452)
56 2q7f_A YRRB protein; TPR, prot 99.4 2.7E-11 9.2E-16 111.9 23.0 200 221-462 23-222 (243)
57 2q7f_A YRRB protein; TPR, prot 99.4 1.5E-11 5.1E-16 113.7 20.2 201 323-612 22-222 (243)
58 4a1s_A PINS, partner of inscut 99.4 1.3E-11 4.4E-16 124.3 21.0 295 71-427 48-372 (411)
59 3sf4_A G-protein-signaling mod 99.4 2.4E-11 8E-16 122.1 22.7 308 222-634 10-363 (406)
60 4a1s_A PINS, partner of inscut 99.4 2.8E-11 9.6E-16 121.8 22.8 284 223-611 50-371 (411)
61 3ro2_A PINS homolog, G-protein 99.4 1.6E-11 5.6E-16 119.6 20.3 296 72-427 6-332 (338)
62 3ulq_A Response regulator aspa 99.4 5.1E-11 1.8E-15 118.5 23.3 302 231-611 22-367 (383)
63 3ro2_A PINS homolog, G-protein 99.4 1E-10 3.6E-15 113.8 24.5 284 224-612 8-332 (338)
64 4abn_A Tetratricopeptide repea 99.4 1.8E-10 6E-15 117.6 26.0 197 221-459 102-318 (474)
65 4e6h_A MRNA 3'-END-processing 99.4 3.8E-08 1.3E-12 103.2 43.6 425 174-643 51-566 (679)
66 4e6h_A MRNA 3'-END-processing 99.4 1.1E-08 3.9E-13 107.1 39.6 448 88-626 49-582 (679)
67 3ulq_A Response regulator aspa 99.3 1.6E-10 5.5E-15 114.9 24.0 303 266-649 22-370 (383)
68 3vtx_A MAMA; tetratricopeptide 99.3 3E-10 1E-14 99.8 21.9 168 219-427 3-170 (184)
69 2ond_A Cleavage stimulation fa 99.3 1.9E-09 6.5E-14 103.4 29.2 216 341-612 33-270 (308)
70 4abn_A Tetratricopeptide repea 99.3 4.5E-10 1.5E-14 114.6 23.8 217 305-609 84-318 (474)
71 3vtx_A MAMA; tetratricopeptide 99.3 7.6E-10 2.6E-14 97.1 22.2 129 323-458 4-132 (184)
72 1hz4_A MALT regulatory protein 99.3 8.7E-10 3E-14 109.2 25.3 291 72-391 15-321 (373)
73 3nf1_A KLC 1, kinesin light ch 99.3 1.4E-10 4.9E-15 111.5 18.7 240 222-462 28-307 (311)
74 2ond_A Cleavage stimulation fa 99.3 2.7E-09 9.2E-14 102.3 27.5 182 238-427 81-270 (308)
75 3nf1_A KLC 1, kinesin light ch 99.3 2.2E-10 7.5E-15 110.2 19.8 247 363-651 27-311 (311)
76 3q15_A PSP28, response regulat 99.3 2.6E-09 8.8E-14 105.9 27.5 132 330-461 107-250 (378)
77 3q15_A PSP28, response regulat 99.2 1.2E-09 4.3E-14 108.2 23.9 238 223-461 12-289 (378)
78 1hz4_A MALT regulatory protein 99.2 9.9E-09 3.4E-13 101.6 27.2 207 225-460 18-242 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.1 1.1E-09 3.8E-14 116.2 18.8 161 222-391 10-173 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.1 3.6E-09 1.2E-13 112.3 22.2 166 255-461 8-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.1 1.2E-08 4.1E-13 89.3 21.2 167 256-463 8-174 (186)
82 3as5_A MAMA; tetratricopeptide 99.1 8.1E-09 2.8E-13 90.4 20.1 165 222-427 9-173 (186)
83 3edt_B KLC 2, kinesin light ch 99.1 4.2E-09 1.4E-13 99.5 17.8 222 239-461 26-280 (283)
84 4i17_A Hypothetical protein; T 99.0 3.2E-08 1.1E-12 90.1 21.8 191 222-428 8-210 (228)
85 3edt_B KLC 2, kinesin light ch 99.0 4.6E-09 1.6E-13 99.2 16.2 140 323-462 42-198 (283)
86 4i17_A Hypothetical protein; T 99.0 6.8E-08 2.3E-12 87.9 22.7 198 361-620 5-215 (228)
87 1qqe_A Vesicular transport pro 99.0 2E-08 7E-13 95.2 17.5 215 70-317 36-268 (292)
88 3mv2_B Coatomer subunit epsilo 98.9 4.7E-07 1.6E-11 83.9 24.5 210 229-461 21-239 (310)
89 2yhc_A BAMD, UPF0169 lipoprote 98.9 1E-07 3.5E-12 86.4 19.8 195 71-287 4-215 (225)
90 3qky_A Outer membrane assembly 98.9 2.2E-08 7.7E-13 93.3 15.5 191 71-286 15-225 (261)
91 2fo7_A Synthetic consensus TPR 98.9 1.2E-07 4.2E-12 77.6 17.8 130 326-462 3-132 (136)
92 1qqe_A Vesicular transport pro 98.9 1.3E-07 4.5E-12 89.6 19.7 213 207-460 33-267 (292)
93 2r5s_A Uncharacterized protein 98.9 1.9E-08 6.4E-13 87.3 12.4 166 71-284 6-172 (176)
94 3urz_A Uncharacterized protein 98.9 1.3E-07 4.3E-12 84.6 17.8 113 71-201 4-132 (208)
95 4f3v_A ESX-1 secretion system 98.8 1.5E-07 5.2E-12 86.1 17.6 192 83-287 18-239 (282)
96 3mv2_B Coatomer subunit epsilo 98.8 8.5E-07 2.9E-11 82.3 22.3 167 220-392 99-282 (310)
97 3qky_A Outer membrane assembly 98.8 2.9E-07 1E-11 85.6 19.5 172 220-428 14-225 (261)
98 3qou_A Protein YBBN; thioredox 98.8 8.7E-08 3E-12 90.5 15.1 165 71-283 117-282 (287)
99 2fo7_A Synthetic consensus TPR 98.8 3.8E-07 1.3E-11 74.6 17.2 128 224-391 4-131 (136)
100 3dra_A Protein farnesyltransfe 98.8 2.5E-06 8.6E-11 80.0 24.6 180 155-339 32-235 (306)
101 3urz_A Uncharacterized protein 98.8 4.3E-07 1.5E-11 81.0 18.2 112 324-461 4-116 (208)
102 2pzi_A Probable serine/threoni 98.7 5.6E-08 1.9E-12 103.8 13.5 168 82-270 402-582 (681)
103 2pzi_A Probable serine/threoni 98.7 1.4E-07 4.9E-12 100.6 16.2 173 232-448 402-583 (681)
104 2r5s_A Uncharacterized protein 98.7 1.3E-07 4.6E-12 81.8 13.2 158 222-389 7-170 (176)
105 2uy1_A Cleavage stimulation fa 98.7 6E-05 2E-09 76.6 34.0 203 341-610 196-411 (493)
106 2ifu_A Gamma-SNAP; membrane fu 98.7 4.8E-07 1.6E-11 86.4 16.7 60 223-283 118-182 (307)
107 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.4E-06 4.9E-11 78.8 18.5 204 222-464 5-215 (225)
108 3qou_A Protein YBBN; thioredox 98.7 6.2E-07 2.1E-11 84.6 16.4 163 218-390 114-282 (287)
109 4ga2_A E3 SUMO-protein ligase 98.7 2.2E-07 7.5E-12 77.9 11.7 53 230-284 6-59 (150)
110 3rjv_A Putative SEL1 repeat pr 98.6 4.4E-06 1.5E-10 74.6 20.4 175 343-613 5-198 (212)
111 2vsy_A XCC0866; transferase, g 98.6 1.3E-06 4.4E-11 91.6 18.3 152 269-428 2-158 (568)
112 3rjv_A Putative SEL1 repeat pr 98.6 5.5E-06 1.9E-10 74.0 19.9 141 307-461 4-157 (212)
113 4ga2_A E3 SUMO-protein ligase 98.6 5.1E-07 1.7E-11 75.6 12.2 119 323-448 30-149 (150)
114 2ifu_A Gamma-SNAP; membrane fu 98.6 8.2E-07 2.8E-11 84.8 15.2 183 70-283 35-222 (307)
115 3dra_A Protein farnesyltransfe 98.6 8.5E-05 2.9E-09 69.6 27.8 217 339-611 48-286 (306)
116 2vsy_A XCC0866; transferase, g 98.6 1.8E-06 6.2E-11 90.5 18.4 149 205-393 3-158 (568)
117 2uy1_A Cleavage stimulation fa 98.5 0.0012 4.1E-08 67.0 37.7 348 235-641 28-407 (493)
118 2qfc_A PLCR protein; TPR, HTH, 98.5 4.9E-06 1.7E-10 78.7 18.8 178 73-283 77-264 (293)
119 3u3w_A Transcriptional activat 98.5 6.1E-05 2.1E-09 71.1 26.1 129 329-460 80-223 (293)
120 4gco_A Protein STI-1; structur 98.5 6.1E-06 2.1E-10 66.5 15.5 109 324-439 13-121 (126)
121 1a17_A Serine/threonine protei 98.5 8.2E-06 2.8E-10 69.4 17.0 131 324-461 13-145 (166)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.4 9.8E-06 3.4E-10 72.4 17.4 132 224-393 9-151 (213)
123 2qfc_A PLCR protein; TPR, HTH, 98.4 0.00029 1E-08 66.4 28.5 134 324-460 75-223 (293)
124 2vyi_A SGTA protein; chaperone 98.4 1.1E-05 3.6E-10 65.3 16.1 120 323-449 11-130 (131)
125 1na0_A Designed protein CTPR3; 98.4 1.4E-05 4.8E-10 63.9 16.7 115 324-445 9-123 (125)
126 3gyz_A Chaperone protein IPGC; 98.4 1.9E-06 6.6E-11 71.7 11.5 97 325-427 37-133 (151)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.4 8E-06 2.7E-10 73.0 16.0 129 326-463 8-151 (213)
128 2lni_A Stress-induced-phosphop 98.4 9.3E-06 3.2E-10 66.0 14.5 120 321-447 13-132 (133)
129 4f3v_A ESX-1 secretion system 98.4 2E-05 6.8E-10 72.1 17.5 184 233-428 18-238 (282)
130 3q7a_A Farnesyltransferase alp 98.4 7.3E-05 2.5E-09 70.8 22.0 115 307-427 185-331 (349)
131 2c2l_A CHIP, carboxy terminus 98.4 1.9E-06 6.4E-11 80.9 11.0 193 71-285 4-199 (281)
132 3gyz_A Chaperone protein IPGC; 98.4 8.2E-06 2.8E-10 67.9 13.4 83 303-391 50-132 (151)
133 2c2l_A CHIP, carboxy terminus 98.3 2.5E-05 8.7E-10 73.1 18.4 194 221-462 4-199 (281)
134 4gco_A Protein STI-1; structur 98.3 2.3E-05 7.7E-10 63.1 15.3 98 363-462 13-110 (126)
135 3u3w_A Transcriptional activat 98.3 3.8E-05 1.3E-09 72.6 19.2 172 227-426 81-265 (293)
136 1p5q_A FKBP52, FK506-binding p 98.3 9.8E-06 3.4E-10 78.2 15.3 131 323-461 146-293 (336)
137 3gw4_A Uncharacterized protein 98.3 1.5E-05 5E-10 70.6 15.2 165 232-426 3-175 (203)
138 1a17_A Serine/threonine protei 98.3 4.2E-05 1.4E-09 64.9 16.7 129 257-425 14-144 (166)
139 3gw4_A Uncharacterized protein 98.3 1.6E-05 5.5E-10 70.3 14.5 159 303-462 6-176 (203)
140 4gcn_A Protein STI-1; structur 98.2 3.1E-05 1.1E-09 62.4 14.2 108 324-438 8-121 (127)
141 2vgx_A Chaperone SYCD; alterna 98.2 5.7E-06 2E-10 68.9 10.0 93 366-460 24-116 (148)
142 3upv_A Heat shock protein STI1 98.2 4.4E-05 1.5E-09 61.3 15.1 99 323-427 3-101 (126)
143 3q7a_A Farnesyltransferase alp 98.2 0.0013 4.3E-08 62.4 26.6 221 336-612 66-331 (349)
144 2e2e_A Formate-dependent nitri 98.2 1.5E-05 5.1E-10 68.8 12.5 119 303-428 24-145 (177)
145 2vgx_A Chaperone SYCD; alterna 98.2 8.6E-06 3E-10 67.8 10.4 100 323-428 20-119 (148)
146 1elw_A TPR1-domain of HOP; HOP 98.2 7.3E-05 2.5E-09 58.9 15.6 110 323-439 3-112 (118)
147 1na0_A Designed protein CTPR3; 98.2 7.1E-05 2.4E-09 59.7 15.6 115 256-410 9-123 (125)
148 1p5q_A FKBP52, FK506-binding p 98.2 4.6E-05 1.6E-09 73.5 16.7 129 222-389 148-291 (336)
149 2e2e_A Formate-dependent nitri 98.2 2E-05 6.8E-10 68.0 12.5 121 335-462 21-144 (177)
150 2lni_A Stress-induced-phosphop 98.1 4.9E-05 1.7E-09 61.6 13.8 115 222-376 17-131 (133)
151 3dss_A Geranylgeranyl transfer 98.1 0.00083 2.8E-08 63.3 23.7 228 168-428 42-305 (331)
152 2vyi_A SGTA protein; chaperone 98.1 7.4E-05 2.5E-09 60.2 14.4 119 255-413 11-129 (131)
153 3sz7_A HSC70 cochaperone (SGT) 98.1 6.4E-05 2.2E-09 63.8 14.5 100 323-428 10-109 (164)
154 3upv_A Heat shock protein STI1 98.1 8.6E-05 2.9E-09 59.6 14.6 99 362-462 3-101 (126)
155 2dba_A Smooth muscle cell asso 98.1 0.00011 3.7E-09 60.9 15.4 112 322-441 26-141 (148)
156 3ro3_A PINS homolog, G-protein 98.1 2E-05 6.9E-10 66.5 11.1 149 71-249 9-157 (164)
157 1elr_A TPR2A-domain of HOP; HO 98.1 5E-05 1.7E-09 61.3 13.0 113 324-443 4-122 (131)
158 2fbn_A 70 kDa peptidylprolyl i 98.1 1.6E-05 5.4E-10 70.2 10.5 28 222-249 39-66 (198)
159 3q49_B STIP1 homology and U bo 98.1 0.0001 3.5E-09 60.1 14.4 98 323-426 8-105 (137)
160 2kck_A TPR repeat; tetratricop 98.1 3.9E-05 1.3E-09 59.8 11.4 98 188-286 3-107 (112)
161 2fbn_A 70 kDa peptidylprolyl i 98.1 7.4E-05 2.5E-09 65.8 14.4 135 324-460 38-184 (198)
162 2kck_A TPR repeat; tetratricop 98.1 5.3E-05 1.8E-09 59.1 12.1 98 324-427 6-106 (112)
163 2xcb_A PCRH, regulatory protei 98.1 4.7E-05 1.6E-09 62.8 12.2 95 326-426 20-114 (142)
164 2xcb_A PCRH, regulatory protei 98.1 6.5E-05 2.2E-09 61.9 13.0 100 362-463 17-116 (142)
165 3dss_A Geranylgeranyl transfer 98.0 0.0034 1.2E-07 59.2 25.4 144 120-268 36-191 (331)
166 3q49_B STIP1 homology and U bo 98.0 0.00012 4E-09 59.7 13.8 102 360-463 6-107 (137)
167 4b4t_Q 26S proteasome regulato 98.0 0.00021 7.1E-09 71.9 18.2 215 162-391 11-244 (434)
168 1elw_A TPR1-domain of HOP; HOP 98.0 0.00028 9.6E-09 55.4 15.4 99 362-462 3-101 (118)
169 4gcn_A Protein STI-1; structur 98.0 0.00011 3.7E-09 59.1 13.0 98 363-461 8-111 (127)
170 3sz7_A HSC70 cochaperone (SGT) 98.0 9.8E-05 3.4E-09 62.6 13.3 102 360-463 8-109 (164)
171 4b4t_Q 26S proteasome regulato 98.0 0.00057 2E-08 68.6 21.0 199 228-426 11-244 (434)
172 3ro3_A PINS homolog, G-protein 97.9 0.00012 4.1E-09 61.6 12.7 139 324-462 9-158 (164)
173 1hxi_A PEX5, peroxisome target 97.9 0.00011 3.8E-09 58.5 11.4 95 327-427 20-114 (121)
174 1hxi_A PEX5, peroxisome target 97.9 0.00012 4E-09 58.3 11.4 97 365-463 19-115 (121)
175 3n71_A Histone lysine methyltr 97.9 6.8E-05 2.3E-09 75.5 11.8 60 79-141 317-379 (490)
176 1wao_1 Serine/threonine protei 97.9 0.00022 7.6E-09 72.3 15.4 123 329-458 11-135 (477)
177 2xev_A YBGF; tetratricopeptide 97.9 0.00043 1.5E-08 55.6 14.3 95 327-428 5-106 (129)
178 2dba_A Smooth muscle cell asso 97.9 0.00078 2.7E-08 55.5 16.3 100 360-462 25-128 (148)
179 1elr_A TPR2A-domain of HOP; HO 97.8 0.00028 9.7E-09 56.6 12.9 99 363-462 4-108 (131)
180 1ihg_A Cyclophilin 40; ppiase 97.8 0.00034 1.2E-08 68.2 15.2 128 325-454 224-362 (370)
181 3k9i_A BH0479 protein; putativ 97.8 9.1E-05 3.1E-09 58.5 9.0 90 336-428 2-91 (117)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.0002 7E-09 72.2 13.6 131 323-460 267-413 (457)
183 2hr2_A Hypothetical protein; a 97.8 0.00033 1.1E-08 57.6 12.2 102 325-426 12-130 (159)
184 3n71_A Histone lysine methyltr 97.8 0.00024 8.2E-09 71.5 13.6 137 229-391 317-463 (490)
185 3k9i_A BH0479 protein; putativ 97.8 5E-05 1.7E-09 60.1 7.0 87 375-462 2-90 (117)
186 3rkv_A Putative peptidylprolyl 97.8 0.00067 2.3E-08 57.2 14.6 104 324-428 11-127 (162)
187 2xev_A YBGF; tetratricopeptide 97.7 0.00097 3.3E-08 53.4 14.3 98 223-352 4-104 (129)
188 1wao_1 Serine/threonine protei 97.7 4.2E-05 1.4E-09 77.6 7.1 127 71-215 6-134 (477)
189 3rkv_A Putative peptidylprolyl 97.6 0.001 3.6E-08 55.9 13.2 100 362-462 10-126 (162)
190 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00017 5.8E-09 69.5 9.0 129 326-462 181-328 (338)
191 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00087 3E-08 67.6 14.4 29 222-250 269-297 (457)
192 1ihg_A Cyclophilin 40; ppiase 97.6 0.0005 1.7E-08 67.0 12.1 124 71-210 223-360 (370)
193 2hr2_A Hypothetical protein; a 97.5 0.0014 4.6E-08 53.9 12.0 101 363-463 11-132 (159)
194 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00027 9.2E-09 68.1 8.6 144 113-285 179-328 (338)
195 2l6j_A TPR repeat-containing p 97.4 0.00028 9.7E-09 54.8 6.5 92 362-456 3-101 (111)
196 1dce_A Protein (RAB geranylger 97.4 0.0056 1.9E-07 63.2 17.2 172 84-274 42-244 (567)
197 1klx_A Cysteine rich protein B 97.4 0.0068 2.3E-07 49.2 14.4 110 304-428 10-127 (138)
198 1zu2_A Mitochondrial import re 97.3 0.00024 8.1E-09 58.3 5.3 107 168-300 15-133 (158)
199 1dce_A Protein (RAB geranylger 97.3 0.014 4.7E-07 60.3 18.9 181 235-451 43-244 (567)
200 2l6j_A TPR repeat-containing p 97.2 0.0013 4.6E-08 50.8 8.8 88 546-636 2-96 (111)
201 1na3_A Designed protein CTPR2; 97.2 0.0041 1.4E-07 45.9 11.2 79 364-444 10-88 (91)
202 1klx_A Cysteine rich protein B 97.2 0.023 7.9E-07 46.0 16.1 105 527-642 9-121 (138)
203 2kat_A Uncharacterized protein 97.2 0.0029 9.8E-08 49.5 10.1 78 308-391 4-81 (115)
204 3qww_A SET and MYND domain-con 97.2 0.00084 2.9E-08 66.4 8.3 95 83-183 310-410 (433)
205 1na3_A Designed protein CTPR2; 97.2 0.0053 1.8E-07 45.2 11.0 83 323-411 8-90 (91)
206 1zu2_A Mitochondrial import re 97.1 0.0019 6.4E-08 53.0 8.7 99 336-442 14-133 (158)
207 2kat_A Uncharacterized protein 97.1 0.0024 8.1E-08 49.9 9.0 80 342-427 3-82 (115)
208 3qwp_A SET and MYND domain-con 97.1 0.0015 5.2E-08 64.7 9.3 101 77-183 293-399 (429)
209 3ma5_A Tetratricopeptide repea 97.0 0.0022 7.4E-08 48.7 7.4 68 66-142 3-70 (100)
210 3ma5_A Tetratricopeptide repea 97.0 0.0027 9.4E-08 48.1 7.9 67 218-285 4-70 (100)
211 3ly7_A Transcriptional activat 96.8 0.048 1.6E-06 51.6 15.8 163 206-403 179-348 (372)
212 3ly7_A Transcriptional activat 96.6 0.025 8.5E-07 53.6 12.8 129 153-285 195-339 (372)
213 3qww_A SET and MYND domain-con 96.5 0.029 9.8E-07 55.4 12.8 96 233-354 310-412 (433)
214 3qwp_A SET and MYND domain-con 96.4 0.048 1.6E-06 53.9 14.0 101 228-354 294-401 (429)
215 3bee_A Putative YFRE protein; 96.2 0.025 8.4E-07 41.9 8.4 65 71-143 6-73 (93)
216 2kc7_A BFR218_protein; tetratr 96.1 0.026 8.8E-07 42.3 8.2 57 371-428 8-65 (99)
217 3u64_A Protein TP_0956; tetrat 96.1 0.12 3.9E-06 46.9 13.2 67 222-288 200-272 (301)
218 3mkq_A Coatomer beta'-subunit; 96.0 0.17 5.7E-06 55.3 17.4 130 260-424 633-762 (814)
219 3mkq_B Coatomer subunit alpha; 96.0 0.55 1.9E-05 39.0 15.9 98 168-282 18-115 (177)
220 3mkq_B Coatomer subunit alpha; 95.7 0.21 7.1E-06 41.6 12.5 98 301-423 17-114 (177)
221 3u64_A Protein TP_0956; tetrat 95.6 0.14 4.7E-06 46.4 11.9 94 528-625 178-284 (301)
222 2kc7_A BFR218_protein; tetratr 95.6 0.041 1.4E-06 41.1 7.6 59 330-393 6-65 (99)
223 3mkq_A Coatomer beta'-subunit; 95.3 0.41 1.4E-05 52.1 17.0 98 168-282 665-762 (814)
224 1pc2_A Mitochondria fission pr 95.2 0.24 8.3E-06 40.0 11.0 87 529-619 14-105 (152)
225 3bee_A Putative YFRE protein; 95.2 0.23 8E-06 36.5 10.2 66 322-392 4-72 (93)
226 3lvg_A Clathrin heavy chain 1; 94.5 5.5E-06 1.9E-10 79.4 -20.7 235 186-456 49-285 (624)
227 1pc2_A Mitochondria fission pr 94.5 0.22 7.6E-06 40.2 8.8 81 59-148 21-104 (152)
228 2v5f_A Prolyl 4-hydroxylase su 94.4 0.6 2E-05 35.1 11.0 70 323-392 4-75 (104)
229 3ffl_A Anaphase-promoting comp 94.3 0.29 9.8E-06 39.9 9.1 73 70-142 19-92 (167)
230 2v5f_A Prolyl 4-hydroxylase su 94.3 0.5 1.7E-05 35.6 10.3 68 361-428 3-76 (104)
231 2ff4_A Probable regulatory pro 93.3 1.2 4.1E-05 43.2 13.6 127 150-290 110-244 (388)
232 4h7y_A Dual specificity protei 93.1 2.2 7.4E-05 34.1 11.9 113 322-441 11-136 (161)
233 4b4t_P 26S proteasome regulato 92.7 4.6 0.00016 39.9 17.0 163 225-391 141-323 (445)
234 1wy6_A Hypothetical protein ST 92.5 3 0.0001 32.5 14.8 139 233-395 19-157 (172)
235 1nzn_A CGI-135 protein, fissio 90.8 1.5 5.1E-05 34.0 8.5 86 529-618 17-107 (126)
236 2ff4_A Probable regulatory pro 90.1 3.6 0.00012 39.8 12.8 77 551-628 174-255 (388)
237 4fhn_B Nucleoporin NUP120; pro 89.6 7.8 0.00027 43.8 16.8 218 223-460 814-1048(1139)
238 4h7y_A Dual specificity protei 89.2 7.4 0.00025 31.1 12.0 63 527-591 74-136 (161)
239 4gns_B Protein CSD3, chitin bi 88.5 3.5 0.00012 43.4 12.0 54 331-389 344-397 (754)
240 4gns_B Protein CSD3, chitin bi 87.8 5.9 0.0002 41.7 13.1 139 72-219 249-399 (754)
241 1v54_E Cytochrome C oxidase po 86.7 7.6 0.00026 28.4 9.9 48 529-576 26-73 (109)
242 1wy6_A Hypothetical protein ST 86.7 9.9 0.00034 29.7 16.4 141 123-288 17-157 (172)
243 1v54_E Cytochrome C oxidase po 86.7 5.8 0.0002 29.0 8.4 73 555-628 16-89 (109)
244 1nzn_A CGI-135 protein, fissio 86.2 5 0.00017 31.1 8.7 84 562-647 15-103 (126)
245 3ffl_A Anaphase-promoting comp 85.9 6 0.0002 32.3 9.3 124 118-249 25-150 (167)
246 4fhn_B Nucleoporin NUP120; pro 85.5 23 0.0008 39.9 17.5 193 194-390 815-1048(1139)
247 2p58_C Putative type III secre 85.3 8.9 0.0003 27.9 9.3 87 234-327 20-106 (116)
248 2uwj_G Type III export protein 84.9 8.5 0.00029 28.0 8.4 86 235-327 20-105 (115)
249 4ady_A RPN2, 26S proteasome re 84.5 49 0.0017 35.8 36.2 271 302-631 387-674 (963)
250 3o48_A Mitochondria fission 1 84.3 4.7 0.00016 31.4 7.7 75 66-149 35-112 (134)
251 2y69_E Cytochrome C oxidase su 84.2 13 0.00044 28.9 9.9 45 566-610 71-115 (152)
252 3o48_A Mitochondria fission 1 83.5 12 0.00042 29.1 9.7 75 544-620 36-113 (134)
253 2y69_E Cytochrome C oxidase su 80.5 18 0.00063 28.1 9.5 63 378-441 68-130 (152)
254 2p58_C Putative type III secre 79.1 15 0.0005 26.8 7.9 85 528-621 22-106 (116)
255 1y8m_A FIS1; mitochondria, unk 78.4 16 0.00056 28.8 8.9 72 68-148 36-110 (144)
256 4b4t_R RPN7, 26S proteasome re 78.1 9.8 0.00033 37.4 9.7 104 71-183 131-236 (429)
257 1zbp_A Hypothetical protein VP 77.6 6.4 0.00022 35.1 7.2 60 79-148 5-64 (273)
258 4b4t_R RPN7, 26S proteasome re 76.4 18 0.00063 35.4 11.1 96 222-317 132-236 (429)
259 2uwj_G Type III export protein 76.2 14 0.00049 26.8 7.2 85 528-621 21-105 (115)
260 3lvg_A Clathrin heavy chain 1; 74.1 0.11 3.8E-06 50.5 -5.1 205 70-310 53-283 (624)
261 1qsa_A Protein (soluble lytic 74.1 85 0.0029 32.3 30.5 112 528-642 229-343 (618)
262 1y8m_A FIS1; mitochondria, unk 73.7 32 0.0011 27.2 11.7 73 545-619 36-111 (144)
263 1qsa_A Protein (soluble lytic 73.7 86 0.003 32.3 35.2 250 196-461 77-347 (618)
264 3txn_A 26S proteasome regulato 70.9 76 0.0026 30.4 17.9 88 552-639 103-202 (394)
265 4b4t_P 26S proteasome regulato 66.2 1E+02 0.0035 30.2 20.0 156 303-458 151-320 (445)
266 1zbp_A Hypothetical protein VP 64.2 32 0.0011 30.7 8.6 70 229-299 5-76 (273)
267 3eiq_C Programmed cell death p 64.0 98 0.0033 29.1 13.4 77 365-442 219-297 (358)
268 3esl_A Checkpoint serine/threo 63.4 54 0.0018 27.8 9.4 74 359-432 73-149 (202)
269 2nsz_A Programmed cell death p 58.2 59 0.002 25.2 8.4 69 224-293 10-80 (129)
270 2wpv_A GET4, UPF0363 protein Y 58.1 1.1E+02 0.0039 28.0 16.5 26 190-215 133-158 (312)
271 2zu6_B Programmed cell death p 54.9 33 0.0011 31.6 7.4 69 366-435 169-239 (307)
272 3esl_A Checkpoint serine/threo 53.8 1E+02 0.0035 26.1 10.3 57 337-396 92-148 (202)
273 3lpz_A GET4 (YOR164C homolog); 53.6 1.4E+02 0.0048 27.7 17.3 185 78-284 19-215 (336)
274 3txn_A 26S proteasome regulato 53.5 1.6E+02 0.0054 28.2 23.3 135 326-461 21-167 (394)
275 2ion_A PDCD4, programmed cell 50.3 52 0.0018 26.5 7.0 69 224-293 12-82 (152)
276 4a1g_A Mitotic checkpoint seri 46.0 1.1E+02 0.0039 24.4 9.3 55 565-619 82-137 (152)
277 4a1g_A Mitotic checkpoint seri 45.9 1.1E+02 0.0039 24.4 9.2 71 359-432 64-135 (152)
278 2wpv_A GET4, UPF0363 protein Y 45.0 1.9E+02 0.0064 26.6 22.1 109 224-347 36-157 (312)
279 3qye_A TBC1 domain family memb 43.8 1.3E+02 0.0045 27.9 10.0 111 534-649 209-325 (331)
280 4b4t_S RPN3, 26S proteasome re 43.3 1.5E+02 0.005 29.6 10.2 67 71-141 231-298 (523)
281 4aez_C MAD3, mitotic spindle c 41.8 69 0.0023 27.6 6.8 52 89-146 132-183 (223)
282 2wvi_A Mitotic checkpoint seri 40.5 1.5E+02 0.0051 24.1 9.1 57 565-621 77-134 (164)
283 3mv2_A Coatomer subunit alpha; 39.1 2.3E+02 0.008 26.0 12.4 118 80-202 123-254 (325)
284 2wvi_A Mitotic checkpoint seri 37.9 1.6E+02 0.0056 23.9 9.1 72 359-433 59-131 (164)
285 2nsz_A Programmed cell death p 35.7 1.1E+02 0.0039 23.6 6.7 23 328-350 11-33 (129)
286 2keb_A DNA polymerase subunit 35.2 1.3E+02 0.0043 21.8 6.7 31 567-597 28-58 (101)
287 2fu4_A Ferric uptake regulatio 34.2 1.1E+02 0.0038 21.0 6.1 59 574-633 8-67 (83)
288 4gq2_M Nucleoporin NUP120; bet 34.0 2.9E+02 0.0099 30.3 12.0 53 196-248 815-867 (950)
289 3hzj_A Rabgap1L, RAB GTPase-ac 33.3 2.2E+02 0.0074 26.1 9.6 110 534-648 175-292 (310)
290 2keb_A DNA polymerase subunit 32.2 1.4E+02 0.0049 21.6 6.2 57 531-589 27-88 (101)
291 3mkr_B Coatomer subunit alpha; 31.7 3.1E+02 0.011 25.2 11.3 103 79-186 110-229 (320)
292 2xig_A Ferric uptake regulatio 29.7 2E+02 0.0069 22.8 7.5 63 387-450 16-78 (150)
293 3bu8_A Telomeric repeat-bindin 28.6 1.9E+02 0.0065 24.7 7.0 56 87-142 88-143 (235)
294 4aez_C MAD3, mitotic spindle c 27.4 3E+02 0.01 23.7 12.2 145 71-254 29-183 (223)
295 1wdy_A 2-5A-dependent ribonucl 27.4 2.4E+02 0.0083 24.7 8.9 23 121-147 10-32 (285)
296 4g8k_A 2-5A-dependent ribonucl 27.3 3.6E+02 0.012 24.6 14.3 108 309-432 219-328 (337)
297 3l6a_A Eukaryotic translation 25.6 4.3E+02 0.015 24.9 15.0 67 224-294 15-86 (364)
298 3eiq_C Programmed cell death p 25.6 2.4E+02 0.0082 26.5 8.2 72 224-296 220-293 (358)
299 1wdy_A 2-5A-dependent ribonucl 25.0 35 0.0012 30.6 2.5 76 559-638 190-270 (285)
300 4fke_A Aminopeptidase N; zinc 24.4 7.1E+02 0.024 27.0 14.3 147 305-461 705-859 (909)
301 4gq2_M Nucleoporin NUP120; bet 23.6 6.1E+02 0.021 27.7 12.3 108 330-447 816-950 (950)
302 2fe3_A Peroxide operon regulat 23.2 2.7E+02 0.0093 21.8 7.2 59 574-633 13-71 (145)
303 2ijq_A Hypothetical protein; s 23.2 3E+02 0.01 22.3 8.0 69 72-142 34-104 (161)
304 2rpa_A Katanin P60 ATPase-cont 22.9 83 0.0028 21.8 3.3 29 72-100 13-41 (78)
305 2qx5_A Nucleoporin NIC96; mRNA 22.9 6.5E+02 0.022 26.1 13.3 17 444-460 549-565 (661)
306 3hra_A Ankyrin repeat family p 22.8 88 0.003 26.0 4.6 14 383-396 158-171 (201)
307 2zu6_B Programmed cell death p 22.5 2.4E+02 0.0082 25.8 7.5 69 224-293 169-239 (307)
308 3pvs_A Replication-associated 22.3 5.5E+02 0.019 25.0 11.5 103 512-614 191-326 (447)
309 1wgl_A TOLL-interacting protei 22.2 75 0.0026 20.5 2.9 30 290-319 24-53 (59)
310 2fe3_A Peroxide operon regulat 22.1 2.3E+02 0.008 22.2 6.6 63 387-450 11-73 (145)
311 4ady_A RPN2, 26S proteasome re 22.1 7.9E+02 0.027 26.8 35.5 184 266-461 384-588 (963)
312 2xig_A Ferric uptake regulatio 21.4 3.1E+02 0.01 21.7 7.2 41 592-632 35-75 (150)
313 3ctd_A Putative ATPase, AAA fa 20.9 3.9E+02 0.013 22.7 9.0 35 528-562 50-84 (213)
314 3ltm_A Alpha-REP4; protein eng 20.8 3.6E+02 0.012 22.3 17.1 172 396-633 31-203 (211)
315 2ijq_A Hypothetical protein; s 20.2 3.5E+02 0.012 21.9 8.3 60 551-611 36-103 (161)
316 3c1d_A Protein ORAA, regulator 20.2 3.4E+02 0.012 21.7 11.6 102 529-635 46-147 (159)
317 1ug3_A EIF4GI, eukaryotic prot 20.0 3.7E+02 0.013 24.9 8.5 24 225-248 15-38 (339)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-36 Score=319.30 Aligned_cols=460 Identities=7% Similarity=-0.015 Sum_probs=346.6
Q ss_pred HHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccch
Q 006303 114 EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193 (651)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 193 (651)
..++.++..+.+.|++++|+.+|+++.+ ..|+.. .+..+.. .+...|++++|+.+|+++... +.+...
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~----~~~~l~~---~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 152 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPN----DAFWLAQ---VYCCTGDYARAKCLLTKEDLY---NRSSAC 152 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHH----HHHHHHH---HHHHTTCHHHHHHHHHHTCGG---GTCHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCch----HHHHHHH---HHHHcCcHHHHHHHHHHHhcc---ccchhH
Confidence 3445566666777777777777777764 333321 2222333 333467777777777765432 344556
Q ss_pred HHHHHHHHhcCCChHHHHHHhhh-CCCC-------------------CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 006303 194 EFRIVQLCVNKPDVNLAIRYACI-VPRA-------------------DILFCNFVREFGKKRDLVSALRAYDASKKHLSS 253 (651)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~-~~~~-------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 253 (651)
+..++..|.+.|++++|.++|+. .|.. ..+++.++.+|.+.|++++|++.|+++.+.+.
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p- 231 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA- 231 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 66777777777777777777763 3333 46788999999999999999999999988542
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHH
Q 006303 254 PNMYICRTIIDVCGICGDYMKSR--AI-YEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYN 328 (651)
Q Consensus 254 ~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~ 328 (651)
.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..+. |++++|.++|+++.+. +++..+++
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 309 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL 309 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHH
Confidence 24556666665544433322221 11 444554444455556666666654 6889999999998765 57889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
.++.+|.+.|++++|.++|+++.+. .+.+..+++.++.+|.+.|++++|..+++++.... +.+..++..++..|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEI-----DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 9999999999999999999998863 23467789999999999999999999999998653 44788899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccc
Q 006303 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (651)
.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++....
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------- 437 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------------------------- 437 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------------------
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------
Confidence 99999999999999998764 4567789999999999999999999999887542
Q ss_pred cccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHH
Q 006303 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566 (651)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 566 (651)
+.+..+|+.++.+|. +++++|.++|+++.+.. +.+..+|+.++..|.+.|++++
T Consensus 438 -----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 438 -----------------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp -----------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 346678888888876 48899999999998753 2378889999999999999999
Q ss_pred HHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006303 567 ALQILKIMRED----GMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQC 640 (651)
Q Consensus 567 A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 640 (651)
|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999998875 66787 7899999999999999999999999998754 45788999999999999999998875
Q ss_pred HHHHH
Q 006303 641 LAVYQ 645 (651)
Q Consensus 641 ~~~~~ 645 (651)
++..-
T Consensus 573 ~~~~l 577 (597)
T 2xpi_A 573 LHESL 577 (597)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-36 Score=320.30 Aligned_cols=483 Identities=12% Similarity=-0.008 Sum_probs=389.0
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
|......+..++..+.+.|++++|+.+|++++.. .|+. ..+..++..+.+.|++++|+.+|+++... .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 148 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNP-------NDAFWLAQVYCCTGDYARAKCLLTKEDLY--NR 148 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GT
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCc-------hHHHHHHHHHHHcCcHHHHHHHHHHHhcc--cc
Confidence 4345788999999999999999999999999976 4442 23356788899999999999999998753 23
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC--------------CCccccchHHHHHHHHhcCCChHHHHH
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--------------LPVKELDEEFRIVQLCVNKPDVNLAIR 212 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (651)
+.. ....++. .+.+.|++++|+.+|+++.... ..+.+...+..++..|.+.|++++|.+
T Consensus 149 ~~~----~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 149 SSA----CRYLAAF---CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CHH----HHHHHHH---HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chh----HHHHHHH---HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 222 3333333 5566899999999998532211 012347789999999999999999999
Q ss_pred HhhhC----CCCCccHHHHHHHHhhcCCHHHHHH--H-HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 213 YACIV----PRADILFCNFVREFGKKRDLVSALR--A-YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 213 ~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
.|+.+ |.+..++..+...+...++.+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+.
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 99876 5555666666666655443333222 1 455555444445667788888899999999999999998876
Q ss_pred CCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH
Q 006303 286 NVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (651)
Q Consensus 286 g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 363 (651)
.++..+|+.+...+. |++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++.+.+. .+.+.
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 373 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----HPEKA 373 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CcccH
Confidence 578889998888765 89999999999998765 347889999999999999999999999999863 35578
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (651)
.+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 899999999999999999999999998754 3368899999999999999999999999999875 55788999999999
Q ss_pred HhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHH
Q 006303 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (651)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 523 (651)
.+.|++++|.++|+++.... ..+..+|+.+..
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~ 483 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF------------------------------------------------QYDPLLLNELGV 483 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC------------------------------------------------CCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC------------------------------------------------CCChHHHHHHHH
Confidence 99999999999999987642 446788999988
Q ss_pred HHh--hcHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 524 ACC--TDYYRVKALMNEMRTV----GLSPN--HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (651)
Q Consensus 524 ~~~--~~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (651)
.+. +++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 887 4899999999999876 66787 7899999999999999999999999998864 3488999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 006303 596 SKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRAR 628 (651)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 628 (651)
.|++++|.++|+++.+. .|+ ...+..+..+|
T Consensus 563 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 99999999999999975 454 45555554443
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.1e-29 Score=254.21 Aligned_cols=188 Identities=15% Similarity=0.217 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---------VEQAMHLFEEMLQAGCEPNSQ 434 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 434 (651)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34566666666666666666666666666666666666666666665443 456666666666666666666
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCC
Q 006303 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (651)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (651)
+|+.||.+|++.|++++|.++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~---------------------------------------------------------- 128 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMV---------------------------------------------------------- 128 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH----------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHH----------------------------------------------------------
Confidence 6666666666666666655555
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 515 TTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (651)
Q Consensus 515 ~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 594 (651)
++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 129 ----------------------~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 129 ----------------------KQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp ----------------------HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred ----------------------HHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 4555666778888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 595 RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (651)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 631 (651)
+.|+.++|.+++++|.+.|+.|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888777653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.3e-28 Score=247.54 Aligned_cols=204 Identities=15% Similarity=0.236 Sum_probs=174.9
Q ss_pred HHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC-----------ChH
Q 006303 239 SALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DLK 306 (651)
Q Consensus 239 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-----------~~~ 306 (651)
.+..+.+++.+.+..+. ...++.+|++|++.|++++|.++|++|.+.|+.||..+||++|.+++. ..+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34455566666665543 346788889999999999999999999999999999999999987652 367
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
.|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+ .| +.||..+|+.+|.+|++.|++++|.++|
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA---FG-IQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TT-CCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 8999999999999999999999999999999999999999999987 45 8999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (651)
++|.+.|+.||..||+.||.+|++.|+.++|.++|++|.+.+..|+..||+.++..|+..
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.6e-24 Score=214.84 Aligned_cols=294 Identities=12% Similarity=0.064 Sum_probs=161.9
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhH
Q 006303 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (651)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 156 (651)
++..+.+.|++++|++.++.+++. .|+.. .++..+...+...|++++|...++...+. .|+. ..
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~------~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~------~~ 68 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNT------GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLL------AE 68 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc------hH
Confidence 344556677788888877777776 55532 23334455567777777777777777663 2321 11
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCC
Q 006303 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (651)
Q Consensus 157 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~ 236 (651)
.+......+.+.|++++|+..|++++... |+ ...++..++..+.+.|+
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~------------------------------~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLK--PD------------------------------FIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT------------------------------CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cc------------------------------hHHHHHHHHHHHHHcCC
Confidence 12222224444677777777777766533 33 33456666667777777
Q ss_pred HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006303 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (651)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~ 316 (651)
+++|++.|+++.+..+ .+...+..+...+...|++++|.+.|+++.+.. |
T Consensus 117 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p--------------------------- 166 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--P--------------------------- 166 (388)
T ss_dssp SSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--T---------------------------
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C---------------------------
Confidence 7777777777766421 234456666677777777777777777776542 1
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC
Q 006303 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (651)
Q Consensus 317 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 396 (651)
.+..+|..+...+...|++++|...|+++.+. .+.+...|..+...+...|++++|...+++..... +.
T Consensus 167 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 167 -----NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp -----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 13344444455555555555555555555442 12233444455555555555555555555544432 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 397 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
+..++..+...+.+.|++++|...|+++.+.+ +.+..+|..+..++.+.|++++|.+.|+++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555442 2234445555555555555555555555544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.3e-24 Score=215.13 Aligned_cols=370 Identities=13% Similarity=0.071 Sum_probs=276.9
Q ss_pred hhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 166 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
.+.|++++|+..++++.... |++...+..++..+...|++++|..++... |.+..++..++..|.+.|++++|+
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 34699999999998887754 555555555555555555555555544332 344445555555555555555555
Q ss_pred HHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 006303 242 RAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (651)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~ 320 (651)
+.|+++.+. .| +..+|..+..++.+.|++++|.+.|+++. +..
T Consensus 88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------------------------~~~- 131 (388)
T 1w3b_A 88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSAL---------------------------------QYN- 131 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH---------------------------------HHC-
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------------------HhC-
Confidence 555555542 22 23345555555555555555555555444 332
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 400 (651)
+.+...+..+...+...|++++|.+.|+++... .+.+..+|..+...+...|++++|...|+++.+.+. .+...
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 205 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDA 205 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHH
Confidence 224567777888999999999999999999874 244578899999999999999999999999998753 36788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhh
Q 006303 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (651)
Q Consensus 401 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (651)
|..+...+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|.+.|+++....
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------- 267 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ----------------- 267 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------
Confidence 9999999999999999999999998874 4467889999999999999999999999987642
Q ss_pred hhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006303 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (651)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 558 (651)
+.+..+|..+...+. +++++|...++++.+.. +.+..++..+...+
T Consensus 268 -------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 268 -------------------------------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp -------------------------------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred -------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 234567788877776 48999999999998863 45788999999999
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 006303 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRARSRYG 632 (651)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 632 (651)
...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+. .|+ ...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99999999999999998752 335788999999999999999999999999864 454 556666666655544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.6e-20 Score=195.97 Aligned_cols=443 Identities=11% Similarity=-0.020 Sum_probs=257.4
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|++++... |+ ..++..++..+...|++++|+..++++.+. .|+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~- 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--ED-------PVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYS- 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCH-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cc-------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHH-
Confidence 5677888899999999999999999999984 54 345567788899999999999999999985 34332
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCC-----CccHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-----DILFC 225 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~ 225 (651)
..+......+...|++++|+..|+++...+ |.+......++..+........+.+.+..+... .....
T Consensus 74 -----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 74 -----KVLLRRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred -----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 233334445666899999999999998866 333333333333332222222211111100000 00000
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCC---------CCcHHhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCc
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLS---------SPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRS-----QNVT 288 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~g~~ 288 (651)
.-...............+...+..... +.+...+......+.. .|++++|+..|+++.+ ....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 000000000000001111111111110 1124444444444443 7888888888888776 3111
Q ss_pred cc--------HHHHHHHHHh--hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 006303 289 LN--------IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (651)
Q Consensus 289 ~~--------~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (651)
|+ ...+..+... ..|+++.|...|+++.+.. |+...+..+...+...|++++|.+.++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 299 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL----- 299 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-----
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-----
Confidence 21 2222222222 2255666666666655543 22556666666777777777777777766652
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
.+.+...+..+...|...|++++|...++++...... +...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 377 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNF 377 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHH
Confidence 2334556666677777777777777777776665322 45566666667777777777777777766653 334556666
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHH
Q 006303 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518 (651)
Q Consensus 439 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (651)
+..+|.+.|++++|...++++...... .++
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------------------------~~~---- 407 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENK----------------------------------------------LDG---- 407 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHT----------------------------------------------SSS----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhc----------------------------------------------cch----
Confidence 666777777777777776655432110 000
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 519 NILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (651)
Q Consensus 519 ~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (651)
..-....+..+...|.. .|++++|...++++.+.. +.+..++..+...|.+
T Consensus 408 -------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 461 (514)
T 2gw1_A 408 -------------------------IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQ 461 (514)
T ss_dssp -------------------------CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 00013366777777777 888888888888877643 2356677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH
Q 006303 596 SKRLKQAFSLFEEMKHYQIQPNLV 619 (651)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p~~~ 619 (651)
.|++++|.+.|++..+. .|+..
T Consensus 462 ~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 462 QEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp TTCHHHHHHHHHHHHHH--CSSHH
T ss_pred hcCHHHHHHHHHHHHHh--ccccH
Confidence 88888888888888754 35543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.5e-20 Score=193.44 Aligned_cols=430 Identities=9% Similarity=-0.011 Sum_probs=293.8
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhc
Q 006303 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKK 234 (651)
Q Consensus 159 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~ 234 (651)
......+.+.|++++|+..|++++... | +...+..++.++...|++++|...++.+ |.+..++..++.+|.+.
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 333445556899999999999998866 4 4667777788888888888888776653 55567777788888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh--hcCChHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~ 312 (651)
|++++|+..|+.+.+.+. ++......++..+........+.+.+..+...+..|+...+...... ..........+.
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 888888888888777543 23333444444444333333333333222222111111111110000 000111111111
Q ss_pred HHHHHCCC---------CCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----hhhcCCc----cccHHHHHHHHH
Q 006303 313 KNMQKLGV---------MADMASYNILLKACCL---AGNTVLAQEIYGEVKH-----LEAKGVL----KLDVFTYSTIVK 371 (651)
Q Consensus 313 ~~m~~~~~---------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~~~~~----~~~~~~~~~l~~ 371 (651)
..+..... +.+...+..+...+.. .|++++|...|+++.. ....... +.+...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 11111110 1224455555555554 8999999999999886 2101000 234567888999
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (651)
.+...|++++|...++++.... |+...+..+..++...|++++|...++++.+.. +.+...+..+..+|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999998864 338888999999999999999999999998875 4567788999999999999999
Q ss_pred HHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcH
Q 006303 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDY 529 (651)
Q Consensus 452 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~ 529 (651)
|...+++..... +.+...+..+...+. +++
T Consensus 323 A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 323 AGKDFDKAKELD------------------------------------------------PENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHHHHHHTC------------------------------------------------SSCSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHHHHHhC------------------------------------------------hhhHHHHHHHHHHHHHcCCH
Confidence 999999887542 223456666666665 489
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHH
Q 006303 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-SPD----VVAYTTAIKVCVR---SKRLKQ 601 (651)
Q Consensus 530 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~---~g~~~~ 601 (651)
++|...++.+.+.. +.+..++..+...|...|++++|...++++.+... .++ ...|..+...+.. .|++++
T Consensus 355 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 355 DDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 99999999998753 23567889999999999999999999999987321 112 4488899999999 999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 602 AFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 602 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
|.+.++++.+.. +.+...+..+..++.+.|++++|.+.++..-
T Consensus 434 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 434 ATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998753 4467888999999999999999888655443
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=4.5e-20 Score=193.76 Aligned_cols=430 Identities=10% Similarity=0.004 Sum_probs=304.9
Q ss_pred HHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccc
Q 006303 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (651)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 192 (651)
...+...+..+.+.|++++|+..|+++.+. .|+.. ..+......+...|++++|+..+++++... |.+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 94 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEP------VFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSK 94 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCc------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHH
Confidence 455677788899999999999999999985 34332 233334445666899999999999999865 77888
Q ss_pred hHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CcHHhHHHHHHHHHhcC
Q 006303 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICG 270 (651)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 270 (651)
.+..++..+...|++++|...++.+..++......+..+...+....|...++.+...... +........+..+....
T Consensus 95 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 95 ALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 8999999999999999999988766544444444555666777778899999888653110 11111222333344555
Q ss_pred CHHHHHHHHHHHHhCCCcccHH-HHHHHHHhhc----------CChHHHHHHHHHHHHCCCCCC-------HHhHHHHHH
Q 006303 271 DYMKSRAIYEDLRSQNVTLNIY-VFNSLMNVNA----------HDLKFTLEVYKNMQKLGVMAD-------MASYNILLK 332 (651)
Q Consensus 271 ~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~----------~~~~~a~~~~~~m~~~~~~~~-------~~~~~~ll~ 332 (651)
+.+.+...+...... .+... ....+...+. ++++.|..+++++.+.. +.+ ..++..+..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHH
Confidence 665555544433222 22221 2222222221 36788888888887753 122 235666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 412 (651)
.+...|++++|.+.|+.+.. ..|+...+..+...+...|++++|...++++.... +.+..++..+...+...|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESIN------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHH------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHhcccHHHHHHHHHHHHh------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 88889999999999999987 45677888899999999999999999999998764 336788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccC
Q 006303 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492 (651)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (651)
++++|...|+++.+.. +.+...+..+..+|...|++++|...++++....
T Consensus 325 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------------------------- 374 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF----------------------------- 374 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------------
Confidence 9999999999998875 4456788889999999999999999999887642
Q ss_pred CCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHhcC----
Q 006303 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGL-----SPNHISWTILIDACGGS---- 561 (651)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~---- 561 (651)
+.+...+..+...+. +++++|...++++.+... ......+..+...+...
T Consensus 375 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 375 -------------------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp -------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred -------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 223445566655554 588999999998876421 11222344555667777
Q ss_pred ------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 562 ------GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 562 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
|++++|...++++.+.. +.+...|..+...|.+.|++++|.+.|++..+.
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999998853 236788899999999999999999999999864
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.7e-19 Score=184.77 Aligned_cols=335 Identities=12% Similarity=0.038 Sum_probs=238.6
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+.+.+..+|.. ...+..++..+.+.|++++|+.+|+.+++. .|. ...++..++..+...|++++|+..|++
T Consensus 15 ~~~~~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 15 TENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD------NYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCc------cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555666766 889999999999999999999999999987 555 245566778889999999999999999
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCcccc---chHHHHHHHHhcCCChHHHHHHhh
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYAC 215 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 215 (651)
+.+.+ |+. ...+......+...|++++|+..|+++.... |.+. ..+..++..+..
T Consensus 86 al~~~--p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~------------ 143 (450)
T 2y4t_A 86 VIQLK--MDF------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM------------ 143 (450)
T ss_dssp HHHHC--TTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH------------
T ss_pred HHhcC--CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH------------
Confidence 99854 432 1223333445666899999999999998755 5555 555555443211
Q ss_pred hCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 006303 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (651)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 295 (651)
..+..+...+.+.|++++|+..|+++.+... .+..++..+..+|.+.|++++|+..|+++.+... .+...|.
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 215 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 1233445566667777777777777766422 3566677777777777777777777777765422 2345555
Q ss_pred HHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHHhhhcCCccc
Q 006303 296 SLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL------------LKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (651)
Q Consensus 296 ~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (651)
.+...+. |++++|+..|+++.... +.+...+..+ ...+...|++++|.+.|+.+... .|
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p 288 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EP 288 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Confidence 5555433 67777777777776542 2233444433 78899999999999999999873 34
Q ss_pred c-----HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 362 ~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
+ ...+..+...+.+.|++++|+..++++.... +.+...|..+..+|...|++++|...|+++.+.. +.+...+
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 366 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIR 366 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHH
Confidence 4 4478889999999999999999999998763 3378899999999999999999999999999864 3345566
Q ss_pred HHHHH
Q 006303 437 NILLQ 441 (651)
Q Consensus 437 ~~ll~ 441 (651)
..+..
T Consensus 367 ~~l~~ 371 (450)
T 2y4t_A 367 EGLEK 371 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=2.2e-19 Score=183.87 Aligned_cols=370 Identities=9% Similarity=0.031 Sum_probs=207.0
Q ss_pred ccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 006303 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (651)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (651)
|.+...+..++..+.+.|++++|..+|+.+ |.+..++..++.+|...|++++|+..|+++.+.+. .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 666667777777777778888877777653 55667777888888888888888888888877532 3567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcccH---HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 006303 264 DVCGICGDYMKSRAIYEDLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340 (651)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 340 (651)
.+|.+.|++++|...|+++.+.... +. ..+..+...+ ....+..+...+...|++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~---------------------~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSD---------------------EMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCH
Confidence 8888888888888888888765321 22 3333332210 000111223334445555
Q ss_pred HHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006303 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420 (651)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 420 (651)
++|...|+.+... .+.+...+..+..+|...|++++|..+|+++.+.. +.+..++..+...|...|++++|...
T Consensus 160 ~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 160 TAAIAFLDKILEV-----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555554442 12234445555555555555555555555554432 22444555555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHH------------HHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccc
Q 006303 421 FEEMLQAGCEPNSQCCNIL------------LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (651)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (651)
|+++.+.. +.+...+..+ ..+|.+.|++++|...|+++......
T Consensus 234 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----------------------- 289 (450)
T 2y4t_A 234 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS----------------------- 289 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-----------------------
T ss_pred HHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----------------------
Confidence 55554432 2222223222 45555555666666555555543210
Q ss_pred cccCCCCccCCCcccccccccccCCC--HHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCCh
Q 006303 489 SITNTPNFVPNSHYSSFDKRFSFKPT--TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564 (651)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 564 (651)
.+. ...|..+...+. +++++|...++.+.+.. +.+...|..+..+|...|++
T Consensus 290 -----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 290 -----------------------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMY 345 (450)
T ss_dssp -----------------------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred -----------------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCH
Confidence 011 223333333333 35556666666655432 23567788888888888888
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHH------------HHhcC-----CHHHHHHHHHHHH-HCC--CCCCH-----
Q 006303 565 EGALQILKIMREDGMSP-DVVAYTTAIKV------------CVRSK-----RLKQAFSLFEEMK-HYQ--IQPNL----- 618 (651)
Q Consensus 565 ~~A~~~~~~~~~~~~~p-~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m~-~~g--~~p~~----- 618 (651)
++|...++++.+. .| +...+..+..+ |...| +.+++.+.++++. +.. ..|+.
T Consensus 346 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~ 423 (450)
T 2y4t_A 346 DEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK 423 (450)
T ss_dssp HHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHH
Confidence 8888888888874 34 35555555532 33333 4566777777632 210 11221
Q ss_pred --HHHHHHHHHHHhcCCHHH
Q 006303 619 --VTYITLLRARSRYGSLHE 636 (651)
Q Consensus 619 --~~~~~l~~~~~~~g~~~~ 636 (651)
..|..+..+|...|+.+.
T Consensus 424 a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 424 AEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 256666666666666554
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2.8e-18 Score=180.10 Aligned_cols=431 Identities=10% Similarity=-0.015 Sum_probs=301.4
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
....+..++..+.+.|++++|+..|+++++. .|+ ...++..++..+...|++++|+..++++.+. .|+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPN------EPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchH
Confidence 3678889999999999999999999999998 665 3456677788899999999999999999985 34322
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC-------CCc
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-------ADI 222 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~ 222 (651)
..+......+...|++++|+..|+. .... |+.... .+..+...+....|...+...-. ...
T Consensus 94 ------~~~~~la~~~~~~g~~~~A~~~~~~-~~~~--~~~~~~---~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 161 (537)
T 3fp2_A 94 ------KALLRRASANESLGNFTDAMFDLSV-LSLN--GDFDGA---SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161 (537)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHH-HC----------------CHHHHHHHHHHHHHHHHHCC-------CCC
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHH-HhcC--CCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 2233344456668999999999974 3322 222211 12223333444566666555311 112
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCcccHH-
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGIC--------GDYMKSRAIYEDLRSQNVTLNIY- 292 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~g~~~~~~- 292 (651)
.....+..+....+.+.+...+..... ..+. ......+...+... |++++|+.+|+.+.+.... +..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~ 238 (537)
T 3fp2_A 162 PSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPL 238 (537)
T ss_dssp CCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHH
T ss_pred chHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchh
Confidence 334455666667777766665544333 1122 12333333333222 4788899888888876433 111
Q ss_pred ------HHHHHHHh--hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHH
Q 006303 293 ------VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (651)
Q Consensus 293 ------~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 364 (651)
.+..+-.. ..|+++.|...|++..... |+...+..+...+...|++++|.+.|+.+... .+.+..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~ 311 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL-----NPEYPP 311 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----CTTCHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-----CCCCHH
Confidence 12222222 3378889999999888763 56788888999999999999999999999874 245677
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
++..+...+...|++++|...++++..... .+...+..+...+...|++++|..+++++.+.. +.+...+..+..+|.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 899999999999999999999999987643 356788899999999999999999999999875 456678889999999
Q ss_pred hcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHH--H
Q 006303 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL--M 522 (651)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--l 522 (651)
..|++++|...|+++......... .......+... +
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~------------------------------------------~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEK------------------------------------------IHVGIGPLIGKATI 427 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSS------------------------------------------CSSTTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchh------------------------------------------hHHHHHHHHHHHHH
Confidence 999999999999988765421100 01111111111 2
Q ss_pred HHHh----------hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 523 KACC----------TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 523 ~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
.... +++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2223 67899999999998863 236788999999999999999999999999984
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=9.1e-17 Score=158.85 Aligned_cols=328 Identities=13% Similarity=0.037 Sum_probs=215.8
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
+..+..++..+...|++++|+..|+.++.. .|.. ..++..++..+...|++++|+..++++.+. .|+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~- 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDN------YIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFT- 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cccc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcc-
Confidence 567788899999999999999999999988 5652 445667788899999999999999999985 34321
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCc---cccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV---KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l 227 (651)
..+......+...|++++|+..++++.... | .....+..++.... ...+..+
T Consensus 72 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~------------------~~~~~~~ 126 (359)
T 3ieg_A 72 -----AARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE------------------MQRLRSQ 126 (359)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred -----hHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH------------------HHHHHHH
Confidence 223333445566899999999999998754 5 55555554432110 0112223
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCCh
Q 006303 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDL 305 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~ 305 (651)
...+...|++++|++.++++.+... .+..++..+...+...|++++|...++.+.+... .+...+..+...+ .|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 4445555555555555555544321 2344455555555555555555555555544321 1223333333322 2455
Q ss_pred HHHHHHHHHHHHCCCCCCHHhH------------HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-H----HHHHH
Q 006303 306 KFTLEVYKNMQKLGVMADMASY------------NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-V----FTYST 368 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~----~~~~~ 368 (651)
+.|...+++..+.. +.+...+ ..+...+.+.|++++|...++.+... .|+ . ..+..
T Consensus 205 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 205 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EPSVAEYTVRSKER 277 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHHHH
Confidence 55555555554432 1122222 23466788999999999999999874 233 2 23556
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 369 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
+..++...|++++|...+++..+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+..+...
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 7889999999999999999998863 3378899999999999999999999999999874 3345566666655443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=9.5e-16 Score=151.49 Aligned_cols=312 Identities=10% Similarity=-0.005 Sum_probs=222.7
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..++..+...|++++|+..|+++.+... .+..++..+...+...|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------- 67 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------------- 67 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------
Confidence 3456677778888888888888888877432 356777888888888888888888888776542
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc----cHHHHHHH--------
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL----DVFTYSTI-------- 369 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~l-------- 369 (651)
+.+...+..+...+...|++++|...|+.+.+ ..| +...+..+
T Consensus 68 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 68 -------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCcccChHHHHHHHHHHHHHHH
Confidence 12445566666666677777777777776665 233 23333333
Q ss_pred ----HHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 370 ----VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 370 ----~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 567778888888888888887654 3367778888888888888888888888887764 4567778888888888
Q ss_pred cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHH----
Q 006303 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL---- 521 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 521 (651)
.|++++|...+++...... .+...+..+
T Consensus 201 ~~~~~~A~~~~~~a~~~~~------------------------------------------------~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQ------------------------------------------------DHKRCFAHYKQVK 232 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCT------------------------------------------------TCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCc------------------------------------------------cchHHHHHHHHHH
Confidence 8888888888887765321 112222111
Q ss_pred --------HHHH--hhcHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 522 --------MKAC--CTDYYRVKALMNEMRTVGLSPNH----ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (651)
Q Consensus 522 --------l~~~--~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 587 (651)
...+ .+++++|...++++.+.... +. ..+..+...|.+.|++++|...+++..+.. +.+..+|.
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 310 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 2222 25899999999999885422 22 235567889999999999999999998852 33788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRAR 628 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 628 (651)
.+...|...|++++|.+.|+++.+. .|+ ...+..+..+.
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 9999999999999999999999964 455 44455554443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=7.4e-16 Score=150.36 Aligned_cols=303 Identities=9% Similarity=-0.045 Sum_probs=229.1
Q ss_pred CCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 006303 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (651)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (651)
.+.+...+..++..+...|++++|+++|+++.+... .+...+..++..+...|++++|...++++.+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 86 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY---------- 86 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------
Confidence 456667788888888888999999999998887532 345567777788888889988888888877542
Q ss_pred HHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc
Q 006303 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG-NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (651)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (651)
+.+...+..+...+...| ++++|.+.|+++... .+.+...|..+...+..
T Consensus 87 ------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 87 ------------------------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL-----EKTYGPAWIAYGHSFAV 137 (330)
T ss_dssp ------------------------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-----CTTCTHHHHHHHHHHHH
T ss_pred ------------------------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHH
Confidence 235667788888888888 899999999988863 23456778888899999
Q ss_pred ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006303 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 455 (651)
.|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999998876432 45667778889999999999999999998875 55678888999999999999999999
Q ss_pred HHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHH
Q 006303 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL 535 (651)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~ 535 (651)
+++......... +
T Consensus 216 ~~~a~~~~~~~~----------------------------------------------~--------------------- 228 (330)
T 3hym_B 216 FLDALEKIKAIG----------------------------------------------N--------------------- 228 (330)
T ss_dssp HHHHHHHHTTTS----------------------------------------------C---------------------
T ss_pred HHHHHHHhhhcc----------------------------------------------c---------------------
Confidence 987664321000 0
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006303 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQ 615 (651)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 615 (651)
......+..++..+...|...|++++|...+++..+.. +.+...|..+...|.+.|++++|.+.++++.+.. +
T Consensus 229 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p 301 (330)
T 3hym_B 229 -----EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-R 301 (330)
T ss_dssp -----SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-S
T ss_pred -----cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-C
Confidence 00012345678888888889999999999999888753 2366788888889999999999999999887542 3
Q ss_pred CCHHHHHHHHHHH-HhcCCHH
Q 006303 616 PNLVTYITLLRAR-SRYGSLH 635 (651)
Q Consensus 616 p~~~~~~~l~~~~-~~~g~~~ 635 (651)
.+...+..+..++ ...|+.+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC--
T ss_pred CchHHHHHHHHHHHHHhCchh
Confidence 3566777777777 4566543
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=4.4e-14 Score=145.73 Aligned_cols=347 Identities=12% Similarity=0.035 Sum_probs=278.5
Q ss_pred ccchHHHHHHHHhc----CCChHHHHHHhhhC--CCCCccHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcHHhH
Q 006303 190 ELDEEFRIVQLCVN----KPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYIC 259 (651)
Q Consensus 190 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 259 (651)
+......++..|.. .+++++|..++.+. ..+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44556667777776 78888998888764 3455778889999988 899999999999998854 56777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh------cCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 006303 260 RTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN------AHDLKFTLEVYKNMQKLGVMADMASYNI 329 (651)
Q Consensus 260 ~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 329 (651)
..|...|.. .+++++|+..|++..+.|. ...+..+-..+ .++.+.|.+.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR---DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 888888888 7899999999999988763 33333333332 358999999999998865 6788888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 330 LLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 330 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
|...|.. .++.++|.+.|++..+ ..+...+..+...|.. .+++++|...|++..+.| +...+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSAT-------SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 8888888 8999999999999886 2366778888888876 889999999999998865 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHhhhccccccccccc
Q 006303 402 SSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-----CQFDRAFRLFRSWTLSKTQVALGEDY 472 (651)
Q Consensus 402 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~ 472 (651)
..+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|...|++..+.+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--------- 326 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--------- 326 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---------
Confidence 778888887 899999999999998764 556777788888877 89999999999876532
Q ss_pred CCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh-----hcHHHHHHHHHHHHHcCCCCc
Q 006303 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-----TDYYRVKALMNEMRTVGLSPN 547 (651)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~a~~~~~~~~~~~~~p~ 547 (651)
+...+..+-..+. ++.++|...|++..+.| +
T Consensus 327 -----------------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~ 362 (490)
T 2xm6_A 327 -----------------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---E 362 (490)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---C
T ss_pred -----------------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---C
Confidence 2234444444443 27899999999999863 6
Q ss_pred HHHHHHHHHHHhc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 006303 548 HISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQI 614 (651)
Q Consensus 548 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 614 (651)
...+..|...|.. .+++++|..+|++..+.| +...+..+...|.+ .++.++|.+.|++..+.+.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7788888888888 899999999999999864 67888889999988 8999999999999997663
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1.6e-14 Score=155.86 Aligned_cols=377 Identities=11% Similarity=0.094 Sum_probs=192.6
Q ss_pred HhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 117 ~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
..++..|...|.+.+|+++|+++.- .|+.+..+.....++-.+....+.++..+.+.-++... ...
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl---~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d-----------~~e 1054 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVL---DNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD-----------APD 1054 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHc---CCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc-----------HHH
Confidence 3456667777777777777777772 33322222222222221222222333333333332111 233
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 006303 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 276 (651)
++..+...|.+++|..+|++......+.+.++ ...+++++|.++.+++. +..+|..+..++...|++++|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 56666677777777777776643333323222 25566777776666542 2456667777777777777777
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 006303 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (651)
Q Consensus 277 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (651)
+.|.+. -|...|..++.++.+.|++++|.+.|....+.
T Consensus 1126 dsYiKA---------------------------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~--- 1163 (1630)
T 1xi4_A 1126 DSYIKA---------------------------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--- 1163 (1630)
T ss_pred HHHHhc---------------------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 776542 24445555666666666666666666655542
Q ss_pred CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
.++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|... ..|
T Consensus 1164 ---~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1164 ---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred ---cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 223223334566666666655433221 1 234444555666666666666666666653 245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHH
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (651)
..+..+|.+.|++++|.+.+++ ..+..
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarK-----------------------------------------------------A~n~~ 1251 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARK-----------------------------------------------------ANSTR 1251 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHH-----------------------------------------------------hCCHH
Confidence 6666666666666666666654 22334
Q ss_pred HHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (651)
Q Consensus 517 ~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 594 (651)
+|..+-.+|.. ++..|...... +..++..+..++..|.+.|.+++|+.+++...... .-....|+-+...|+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 45444444432 33333332221 22345555566666666666666666666555432 223334444544444
Q ss_pred hc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 006303 595 RS--KRLKQAFSLFEEMKHYQIQP------NLVTYITLLRARSRYGSLHEVQ 638 (651)
Q Consensus 595 ~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~a~ 638 (651)
+. ++..++.++|..-. ++.| +...|.-++..|.+.|+++.|.
T Consensus 1326 Ky~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 43 23334444433221 2222 3455666666666666666554
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=5.4e-14 Score=151.77 Aligned_cols=406 Identities=12% Similarity=0.102 Sum_probs=282.3
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
+++-....+.+|...|.+.+|+++|++..-. |+.|... .+..+.++....+. +..+..+...+..... .
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n--~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-~---- 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEH--RNLQNLLILTAIKA-DRTRVMEYINRLDNYD-A---- 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCccccc--HHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-H----
Confidence 3555667778888999999999999999843 4423221 22333355555555 5566666655544211 1
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (651)
.-+.. .+.+.|.+++|..+|++... . ...+...+...+++++|.++..+. ..+.+|..+..
T Consensus 1053 ------~eIA~---Iai~lglyEEAf~IYkKa~~------~---~~A~~VLie~i~nldrAiE~Aerv-n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1053 ------PDIAN---IAISNELFEEAFAIFRKFDV------N---TSAVQVLIEHIGNLDRAYEFAERC-NEPAVWSQLAK 1113 (1630)
T ss_pred ------HHHHH---HHHhCCCHHHHHHHHHHcCC------H---HHHHHHHHHHHhhHHHHHHHHHhc-CCHHHHHHHHH
Confidence 11222 33348999999999998521 1 111222333778899999998876 44688999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHH
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (651)
++.+.|++++|++.|.+. .|...|..++..+.+.|++++|++.|...++..-.+...+. +..+++ +++++
T Consensus 1114 Aql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~--LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAE 1185 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH--HHHHHHhhcCHHH
Confidence 999999999999999663 46778888999999999999999999887766433333333 444444 45554
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
...+ .. .++...|..+...|...|++++|...|..+ ..|..+..+|++.|++++|.+.++
T Consensus 1186 le~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1186 LEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred HHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3322 22 356677778999999999999999999864 368899999999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccc
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 467 (651)
+.. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.....
T Consensus 1246 KA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L----- 1309 (1630)
T 1xi4_A 1246 KAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGL----- 1309 (1630)
T ss_pred HhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----
Confidence 762 6789999999999999999988876643 456677888999999999999999999876532
Q ss_pred cccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCC-CHHHHHHHHHHHhh----cHHHHHHHHHHHHHc
Q 006303 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKACCT----DYYRVKALMNEMRTV 542 (651)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~----~~~~a~~~~~~~~~~ 542 (651)
.+ ....|+-+...+++ +..++.++|..-..
T Consensus 1310 --------------------------------------------eraH~gmftELaiLyaKy~peklmEhlk~f~~rin- 1344 (1630)
T 1xi4_A 1310 --------------------------------------------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN- 1344 (1630)
T ss_pred --------------------------------------------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-
Confidence 22 23455555555654 34455555543322
Q ss_pred CCCC------cHHHHHHHHHHHhcCCChHHHHHHHH-------------HHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 543 GLSP------NHISWTILIDACGGSGNVEGALQILK-------------IMREDGMSPDVVAYTTAIKVCVRSK 597 (651)
Q Consensus 543 ~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~-------------~~~~~~~~p~~~~~~~li~~~~~~g 597 (651)
++| +...|..++-.|.+.|+++.|....- +.+. -..|...|...+.-|...+
T Consensus 1345 -i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1345 -IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred -cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 222 56679999999999999998883321 1111 1346667766666666554
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.7e-14 Score=150.40 Aligned_cols=404 Identities=9% Similarity=0.042 Sum_probs=242.3
Q ss_pred ccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 006303 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (651)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (651)
|.+...|..++.. .+.|++++|..+|+++ |.+...|..++..+.+.|++++|.++|+++.+. .|+...|...+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 4555555555553 4455666665555442 455556666666666666666666666666653 24555555555
Q ss_pred HHH-HhcCCHHHHHH----HHHHHHhC-CCcc-cHHHHHHHHHhh-----------cCChHHHHHHHHHHHHCCCCCCHH
Q 006303 264 DVC-GICGDYMKSRA----IYEDLRSQ-NVTL-NIYVFNSLMNVN-----------AHDLKFTLEVYKNMQKLGVMADMA 325 (651)
Q Consensus 264 ~~~-~~~g~~~~a~~----~~~~~~~~-g~~~-~~~~~~~ll~~~-----------~~~~~~a~~~~~~m~~~~~~~~~~ 325 (651)
... ...|+.++|.+ +|+..... |..| +...|...+... .|+++.|..+|++...........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 322 23455554443 45444332 3332 334454444432 245666666666666521111112
Q ss_pred hHHHHHHHH-------------HhcCCHHHHHHHHHHHHHhhhcC-----Ccccc--------HHHHHHHHHHHHcc---
Q 006303 326 SYNILLKAC-------------CLAGNTVLAQEIYGEVKHLEAKG-----VLKLD--------VFTYSTIVKVFADA--- 376 (651)
Q Consensus 326 ~~~~ll~~~-------------~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~--------~~~~~~l~~~~~~~--- 376 (651)
.|....... ...+++..|..+++........- .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 222211110 12345666776666543221100 02333 23455544332221
Q ss_pred -cCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHH
Q 006303 377 -KWW----QMALKVKEDMLSAGVTPNTITWSSLINACAN-------AGLVE-------QAMHLFEEMLQAGCEPNSQCCN 437 (651)
Q Consensus 377 -~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~ 437 (651)
++. +.+..+|++++... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 46777888888753 3367788888887775 68876 8889999888632244677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCC-H-
Q 006303 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-T- 515 (651)
Q Consensus 438 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 515 (651)
.++..+.+.|++++|..+|+++... .|+ .
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------~p~~~~ 356 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI-------------------------------------------------EDIDPT 356 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-------------------------------------------------SSSCHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc-------------------------------------------------cccCch
Confidence 8888888899999999999987753 333 2
Q ss_pred HHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006303 516 TTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA-CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (651)
Q Consensus 516 ~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 592 (651)
..|..++..+. ++.++|..+|+...+... .+...|...... +...|+.++|..+|++..+.. +-+...|..++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 46666666554 478889999998887521 123333332222 335889999999999888742 2357888889998
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 593 CVRSKRLKQAFSLFEEMKHYQ-IQPN--LVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (651)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 646 (651)
+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.++.+...+
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998653 2332 45788888888889998887775544433
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.5e-14 Score=150.79 Aligned_cols=438 Identities=9% Similarity=0.001 Sum_probs=263.2
Q ss_pred hccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHH
Q 006303 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (651)
Q Consensus 61 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~ 140 (651)
+++..+|.. ...+..++.. .+.|++++|..+|+++++. .|.... .....+..+.+.|++++|..+|++++
T Consensus 4 ~al~~~P~~-~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~------~w~~~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 4 KKLEENPYD-LDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGR------FWKLYIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHCTTC-HHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHhhhCCCC-HHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445566776 7888888884 7789999999999999988 676433 33344566778899999999999999
Q ss_pred HcCCCccccccchhhHHHHHHHHHHhhcchHHHHHH----HHHHHHhc-CCCccccchHHHHHHHHhcCCChHHHHHHhh
Q 006303 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVG----LMEVLEEF-RLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (651)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (651)
+. .|+.. +...++.. .....|+.+.|.+ +|++.+.. |..+++...|...+........
T Consensus 74 ~~--~p~~~----lw~~~~~~--~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~--------- 136 (530)
T 2ooe_A 74 MK--VLHID----LWKCYLSY--VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA--------- 136 (530)
T ss_dssp TT--CCCHH----HHHHHHHH--HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC---------
T ss_pred hc--CCChH----HHHHHHHH--HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC---------
Confidence 74 45321 21112210 1112455555544 66655432 3334444444433332211100
Q ss_pred hCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 006303 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (651)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 295 (651)
. . .+...|+++.|+.+|++..+.........|..........|. .+..
T Consensus 137 ----~-~-------~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~ 184 (530)
T 2ooe_A 137 ----V-G-------SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI--------------------HLAK 184 (530)
T ss_dssp ----C-S-------STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHH
T ss_pred ----c-c-------cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch--------------------hHHH
Confidence 0 0 012367888889999888872111112233322221111110 0111
Q ss_pred HHHHhhcCChHHHHHHHHHHH------HCC---CCCC--------HHhHHHHHHHHHhc----CCH----HHHHHHHHHH
Q 006303 296 SLMNVNAHDLKFTLEVYKNMQ------KLG---VMAD--------MASYNILLKACCLA----GNT----VLAQEIYGEV 350 (651)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~------~~~---~~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~ 350 (651)
.++....+++..|..++..+. +.. ++|+ ...|...+...... ++. ..+..+|++.
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 111111123334444443321 111 1222 13344333322221 222 3666777777
Q ss_pred HHhhhcCCccccHHHHHHHHHHHHc-------ccCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006303 351 KHLEAKGVLKLDVFTYSTIVKVFAD-------AKWWQ-------MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (651)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 416 (651)
... .+.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++
T Consensus 265 l~~-----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 265 LLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHH-----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHh-----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 764 35567777777777765 67766 888888888752123357778888888888888888
Q ss_pred HHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCC
Q 006303 417 AMHLFEEMLQAGCEPN-S-QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494 (651)
Q Consensus 417 a~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (651)
|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+...
T Consensus 340 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~------------------------------ 387 (530)
T 2ooe_A 340 VHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR------------------------------ 387 (530)
T ss_dssp HHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT------------------------------
T ss_pred HHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC------------------------------
Confidence 88888888875 333 2 4777777777788888888888888765321
Q ss_pred CccCCCcccccccccccCCCHHHHHHHHHH-HhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 006303 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKA-CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKI 573 (651)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (651)
..+.......++.. ..++.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++
T Consensus 388 ----------------~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 388 ----------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp ----------------CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred ----------------CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 01111122222222 2357888888888887742 23678899999999999999999999999
Q ss_pred HHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 574 MREDG-MSP--DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 574 ~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
....+ ..| ....|...+......|+.+.+.++++++.+
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99863 223 255888888888899999999999999875
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=2.5e-16 Score=156.36 Aligned_cols=282 Identities=13% Similarity=0.014 Sum_probs=202.6
Q ss_pred chHHHHHH-HHHHHHhcCCC--ccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 169 GEVEMFVG-LMEVLEEFRLP--VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 169 ~~~~~A~~-~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
|++++|+. .+++....... ..+...+..++..+...|++++|...+..+ |.+..++..++..|.+.|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 55555555 55544332211 011334555566666666666666655543 445567777788888888888888
Q ss_pred HHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHH------------------HHHHHHhhcC
Q 006303 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV------------------FNSLMNVNAH 303 (651)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~------------------~~~ll~~~~~ 303 (651)
..|+++.+... .+..++..+...+...|++++|+..|+++........... ...++ ..|
T Consensus 119 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 195 (368)
T 1fch_A 119 SALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL--SDS 195 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH--HHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh--hcc
Confidence 88888777532 3567788888888888888888888888776543211111 11111 347
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
++++|...|+++.+.... ++..++..+...+...|++++|...|+++... .+.+...+..+...+...|++++|
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 888999999998876421 15788999999999999999999999999874 244678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCChhHH
Q 006303 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP----------NSQCCNILLQACVEACQFDRA 452 (651)
Q Consensus 383 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~ll~~~~~~g~~~~a 452 (651)
...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..+|...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998764 3467899999999999999999999999998753111 267899999999999999999
Q ss_pred HHHHHHh
Q 006303 453 FRLFRSW 459 (651)
Q Consensus 453 ~~~~~~~ 459 (651)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9988743
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.4e-15 Score=148.41 Aligned_cols=281 Identities=11% Similarity=-0.049 Sum_probs=222.6
Q ss_pred HHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcC-C
Q 006303 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR-D 236 (651)
Q Consensus 162 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g-~ 236 (651)
...+...|++++|+.++++++... |.+...+..++..+...|++++|..++..+ |.+..++..+...+...| +
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhh
Confidence 335555799999999999998865 777777888888899999999999887764 677788999999999999 9
Q ss_pred HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH--hhcCChHHHHHHHHH
Q 006303 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKN 314 (651)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~~~~a~~~~~~ 314 (651)
+++|++.|+++.+... .+..+|..+...+...|++++|+..|+++.+.... +...+..+.. ...|++++|...+++
T Consensus 107 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 107 NEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999987532 35778999999999999999999999999876433 2233333333 345899999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC----ccccHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----LKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
..+.. +.+...+..+...+...|++++|...++++........ .+.....+..+...|...|++++|...++++.
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 98764 34678888999999999999999999999887532110 13345688899999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCh
Q 006303 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV-EACQF 449 (651)
Q Consensus 391 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~ 449 (651)
+.. +.+...+..+..++.+.|++++|...|+++.+.. +.+...+..+..++. ..|+.
T Consensus 264 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 264 VLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred hhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 764 3367788889999999999999999999988764 446667777777773 44544
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=3.1e-13 Score=139.41 Aligned_cols=345 Identities=11% Similarity=0.004 Sum_probs=278.6
Q ss_pred CCCccHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccc
Q 006303 219 RADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLN 290 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 290 (651)
.+..+...|...|.. .+++++|+..|++..+.| +..++..|...|.. .+++++|.+.|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 344677778888887 899999999999998853 56788889999988 899999999999998876 3
Q ss_pred HHHHHHHHHhh------cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHhhhcCCcc
Q 006303 291 IYVFNSLMNVN------AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLK 360 (651)
Q Consensus 291 ~~~~~~ll~~~------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 360 (651)
...+..+-..+ .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------- 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------- 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------
Confidence 33333333332 358999999999998875 67788888888887 78999999999998862
Q ss_pred ccHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC
Q 006303 361 LDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
.+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 367888888888887 899999999999999875 66788888888886 789999999999998764 5
Q ss_pred HHHHHHHHHHHHh----cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccc
Q 006303 433 SQCCNILLQACVE----ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (651)
Q Consensus 433 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (651)
...+..+...|.. .++.++|++.|++..+.+
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------------------------------------------- 289 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------------------------------------------- 289 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------------------------------------------
Confidence 5677777778887 899999999999876432
Q ss_pred cccCCCHHHHHHHHHHH--h-----hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHCC
Q 006303 509 FSFKPTTTTYNILMKAC--C-----TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMREDG 578 (651)
Q Consensus 509 ~~~~~~~~~~~~ll~~~--~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~ 578 (651)
+...+..+-..+ . ++.++|...+++..+.| +...+..+...|...| +.++|.++|++..+.
T Consensus 290 -----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 290 -----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp -----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred -----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 222333333333 2 58899999999999864 4567777888887767 789999999999986
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 006303 579 MSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR----YGSLHEVQQCLAVY 644 (651)
Q Consensus 579 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 644 (651)
.+...+..+...|.. .+++++|.++|++..+.| +...+..+...+.+ .++.++|...++.-
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 378889999999998 899999999999999875 57778888888888 89999888755543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=5.5e-16 Score=153.68 Aligned_cols=264 Identities=8% Similarity=-0.130 Sum_probs=188.2
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..++..+.+.|++++|++.|+++.+... .+..+|..+...|...|++++|+..|+++.+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 129 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--------------- 129 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------
Confidence 4588889999999999999999999987532 367788999999999999999999998877541
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH-----------HHHHHHH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-----------FTYSTIV 370 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~ 370 (651)
+.+..++..+...|...|++++|.+.|+++.+. .|+. ..+..+.
T Consensus 130 -------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~l~ 184 (365)
T 4eqf_A 130 -------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ------NPKYKYLVKNKKGSPGLTRRMS 184 (365)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHCC---------------
T ss_pred -------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CccchHHHhhhccchHHHHHHH
Confidence 235678888888999999999999999988873 2321 2233456
Q ss_pred HHHHcccCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006303 371 KVFADAKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (651)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (651)
..+...|++++|..+++++...... .+..++..+...+...|++++|...|+++.+.. +.+..+|..+..+|.+.|++
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 7778888888888888888765322 156777788888888888888888888877764 44566777777788888888
Q ss_pred hHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcH
Q 006303 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529 (651)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 529 (651)
++|...|++.....
T Consensus 264 ~~A~~~~~~al~~~------------------------------------------------------------------ 277 (365)
T 4eqf_A 264 EEAVEAYTRALEIQ------------------------------------------------------------------ 277 (365)
T ss_dssp HHHHHHHHHHHHHC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcC------------------------------------------------------------------
Confidence 87777776654321
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCC---CC--------CCHHHHHHHHHHHHhcCC
Q 006303 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG---MS--------PDVVAYTTAIKVCVRSKR 598 (651)
Q Consensus 530 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--------p~~~~~~~li~~~~~~g~ 598 (651)
+.+..++..+...|.+.|++++|...|+++.+.. .. .+...|..+..++...|+
T Consensus 278 ---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 278 ---------------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred ---------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 1235667777777888888888888888776621 00 125677778888888888
Q ss_pred HHHHHHHHHH
Q 006303 599 LKQAFSLFEE 608 (651)
Q Consensus 599 ~~~A~~~~~~ 608 (651)
.+.+.++.++
T Consensus 343 ~~~a~~~~~~ 352 (365)
T 4eqf_A 343 PELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 8777766654
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=1.4e-15 Score=150.99 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=104.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccc
Q 006303 410 NAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (651)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (651)
..|++++|...|+++.+..... +..++..+..+|.+.|++++|...|+++....
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------- 247 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR------------------------- 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------
Confidence 6677777777777777654211 46667777777777777777777776544221
Q ss_pred cccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHH
Q 006303 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568 (651)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 568 (651)
+.+..++..+...|...|++++|.
T Consensus 248 --------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 248 --------------------------------------------------------PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp --------------------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 124567777788888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CCCHHHHHHHHHHHHhcCCHHHHH
Q 006303 569 QILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI----------QPNLVTYITLLRARSRYGSLHEVQ 638 (651)
Q Consensus 569 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p~~~~~~~l~~~~~~~g~~~~a~ 638 (651)
..++++.+.. +.+...+..+..+|.+.|++++|.+.|+++.+..- .....+|..+..++...|+.++|.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 8888887742 23567788888888888888888888888764210 112578888888888888888877
Q ss_pred HHH
Q 006303 639 QCL 641 (651)
Q Consensus 639 ~~~ 641 (651)
.+.
T Consensus 351 ~~~ 353 (368)
T 1fch_A 351 AAD 353 (368)
T ss_dssp HHH
T ss_pred HhH
Confidence 654
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=5.6e-18 Score=176.64 Aligned_cols=119 Identities=14% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCccccccccc
Q 006303 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509 (651)
Q Consensus 430 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (651)
.....+|+++|++|++.|++++|.++|++|.... ..
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~--------------------------------------------~k 159 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR--------------------------------------------QK 159 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH--------------------------------------------HH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------------------------------------------hc
Confidence 3344578888888888888888888887764211 01
Q ss_pred ccCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHCCCCCCHHHH
Q 006303 510 SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV-EGALQILKIMREDGMSPDVVAY 586 (651)
Q Consensus 510 ~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~ 586 (651)
|+.||.+|||+||.+||+ +.++|.++|++|.+.|+.||..|||+||+++++.|+. ++|.++|++|.+.|+.||..+|
T Consensus 160 G~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY 239 (1134)
T 3spa_A 160 RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239 (1134)
T ss_dssp HTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhc
Confidence 134444445444444442 3444444444444444444444444444444444442 3444444444444444444444
Q ss_pred HHHHHH
Q 006303 587 TTAIKV 592 (651)
Q Consensus 587 ~~li~~ 592 (651)
++++.+
T Consensus 240 ~~ll~~ 245 (1134)
T 3spa_A 240 AVLLSE 245 (1134)
T ss_dssp HSCCCH
T ss_pred ccccCh
Confidence 444443
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=172.36 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=115.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
.-..||++||++||+.|++++|.++|+.|.++...| ..||..+||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 346799999999999999999999999998765556 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006303 402 SSLINACANAGL-VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (651)
Q Consensus 402 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (651)
+.+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 999999999998 588999999999999999999999999877664
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=4.9e-16 Score=150.23 Aligned_cols=235 Identities=12% Similarity=0.077 Sum_probs=60.4
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 247 (651)
.|+.++|.++++++. ...+|+.+++++.+.|++++|.+.|.+.+ +...|..++..+...|++++|++.++..
T Consensus 16 ~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika~-D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 578899999998862 22478899999999999999998887754 4458888888888889999999977776
Q ss_pred HhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHH
Q 006303 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMA 325 (651)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~ 325 (651)
.+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...+. |.+++|...|..+ .
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 663 3556778888888999999888877764 234344444444433 4455555555544 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
.|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|..+...+ ..+..-...++
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA----------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA----------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH----------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc----------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 3445555555555555555555443 14445555555555555555553333221 11222233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
..|.+.|.+++|..+++...... +-....|+-+--+|+
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 45555555555555555544333 333344444444443
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=2.3e-14 Score=147.46 Aligned_cols=364 Identities=11% Similarity=-0.050 Sum_probs=239.8
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhc-------CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSE-------GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
....|+.|+..+...|++++|++.|++.++.. .+|. ...++.+++..|...|++++|+..+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~------~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR------SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT------THHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 46789999999999999999999999987641 1222 2445678888999999999999999998764
Q ss_pred C---CCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHH---HhcCCChHHHHHHhhh
Q 006303 143 G---VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL---CVNKPDVNLAIRYACI 216 (651)
Q Consensus 143 ~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~ 216 (651)
. ..+........+.....+. .....+++++|++.|++.++.. |++...+..++.+ +...++.++|+..+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTR-LKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHH-HHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1 1111111111111111111 1122468999999999999855 7777777776655 3456777778776655
Q ss_pred C----CCCCccHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 006303 217 V----PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (651)
Q Consensus 217 ~----~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 288 (651)
. |.+..++..+...+.. .+++++|.+.+++...... .+..++..+...|...|++++|+..|++..+..+.
T Consensus 201 al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 3 6666677666655554 4678899999999887532 46778999999999999999999999999876432
Q ss_pred ccHHHHHHHHHhhc---------------------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006303 289 LNIYVFNSLMNVNA---------------------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (651)
Q Consensus 289 ~~~~~~~~ll~~~~---------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 347 (651)
+...+..+-.++. +..+.|...++...+.. +.+..++..+...+...|++++|.+.|
T Consensus 280 -~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 280 -NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 3344443322211 13466777777776654 345678888999999999999999999
Q ss_pred HHHHHhhhcCCccccHH----HHHHHHH-HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 348 GEVKHLEAKGVLKLDVF----TYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (651)
Q Consensus 348 ~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 422 (651)
++.... .++.. .+..+.. .+...|++++|+..|++.++. .|+...... ....+.++++
T Consensus 358 ~kaL~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~ 420 (472)
T 4g1t_A 358 QKEFSK------ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAK 420 (472)
T ss_dssp HHHHHS------CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHH
T ss_pred HHHHhc------CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHH
Confidence 998863 33332 2233332 335789999999999999876 344332222 2344455666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcc
Q 006303 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 423 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
...+.+ +.+..+|..+..+|...|++++|++.|++..+.+
T Consensus 421 ~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 421 MRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666654 5567789999999999999999999999887654
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=3.8e-15 Score=147.63 Aligned_cols=256 Identities=12% Similarity=0.004 Sum_probs=193.2
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc
Q 006303 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (651)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (651)
+..++..+.+.|++++|..+|+.+ |.+..++..++..|.+.|++++|+..|+++.+... .+..++..+..+|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHcc
Confidence 444455555555555555554442 45557778888888888888888888888887532 3577888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCcccHH-HH----------HHHHHh--hcCChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHH
Q 006303 270 GDYMKSRAIYEDLRSQNVTLNIY-VF----------NSLMNV--NAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACC 335 (651)
Q Consensus 270 g~~~~a~~~~~~~~~~g~~~~~~-~~----------~~ll~~--~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~ 335 (651)
|++++|+..|+++.+.. |+.. .+ ..+... ..|++++|...|+++.+.... ++..++..+...+.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 88888888888887653 2211 11 111222 236788899999988876421 26889999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 415 (651)
..|++++|.+.|+++.+. .+.+..+|..+..+|...|++++|+..|+++.+.. +.+..++..+..+|.+.|+++
T Consensus 225 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999874 34567899999999999999999999999998864 336889999999999999999
Q ss_pred HHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 416 QAMHLFEEMLQAGCE-----------PNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 416 ~a~~~~~~~~~~~~~-----------~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
+|...|+++.+.... .+...|..+..++...|+.+.+.+..+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999875311 1356789999999999999988877764
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1.8e-14 Score=140.24 Aligned_cols=264 Identities=10% Similarity=-0.102 Sum_probs=184.6
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..++..+...|++++|+.+|+++.+... .+..++..+...+...|++++|...|+++.+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------- 85 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------- 85 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 5567788888889999999999998887532 366778888888888899998888888876542
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHH-----------
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTI----------- 369 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l----------- 369 (651)
+.+..++..+...+...|++++|.+.++++... .|+ ...+..+
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLS------QPQYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------STTTTTC---------------
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCccHHHHHHHhHHHHHHHHHH
Confidence 235566777778888888888888888887763 222 2222222
Q ss_pred ---HH-HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 370 ---VK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 370 ---~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
.. .+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|..
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLAN 218 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 22 3667777777877777777653 2256677777777777777777777777777654 3456667777777777
Q ss_pred cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH
Q 006303 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 525 (651)
.|++++|...++++....
T Consensus 219 ~~~~~~A~~~~~~a~~~~-------------------------------------------------------------- 236 (327)
T 3cv0_A 219 GNRPQEALDAYNRALDIN-------------------------------------------------------------- 236 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC--------------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHcC--------------------------------------------------------------
Confidence 777777777776544221
Q ss_pred hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHH
Q 006303 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-----------DVVAYTTAIKVCV 594 (651)
Q Consensus 526 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~li~~~~ 594 (651)
+.+...+..+...|...|++++|.+.++++.+..... +...|..+..++.
T Consensus 237 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 237 -------------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 1245566777788888888888888888877632111 3667778888888
Q ss_pred hcCCHHHHHHHHHHH
Q 006303 595 RSKRLKQAFSLFEEM 609 (651)
Q Consensus 595 ~~g~~~~A~~~~~~m 609 (651)
+.|++++|..++++.
T Consensus 298 ~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 298 VMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTCHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHH
Confidence 888888888877654
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=8.4e-15 Score=142.61 Aligned_cols=234 Identities=8% Similarity=-0.082 Sum_probs=179.0
Q ss_pred CCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH-
Q 006303 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL- 297 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l- 297 (651)
.+..++..++..+...|++++|.+.|+++.+... .+..++..+...+...|++++|.+.++++.+.... +...+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 130 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNL 130 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHh
Confidence 3345566667777777777777777777776432 35667777777777788888888888777665322 11112111
Q ss_pred -------------H---HhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc
Q 006303 298 -------------M---NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (651)
Q Consensus 298 -------------l---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (651)
. ....|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+. .+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~ 204 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPD 204 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCC
Confidence 1 122367888999999988764 347888999999999999999999999999874 244
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP---------- 431 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---------- 431 (651)
+...+..+...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.|+++.+.....
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 283 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE 283 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhh
Confidence 67889999999999999999999999998764 3368889999999999999999999999998864221
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 432 -NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 432 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
+...+..+..++.+.|++++|..++++...
T Consensus 284 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 284 ATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 467889999999999999999999876543
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=2.6e-14 Score=135.62 Aligned_cols=251 Identities=10% Similarity=-0.009 Sum_probs=152.4
Q ss_pred hccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHH
Q 006303 82 AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNE 161 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (651)
.-.|.+.+|+..++..... .|+.. .+....+++.|...|+++.|+..++.. -.| ....+...
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~-----~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~-------~~~a~~~l 71 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERD-----VERDVFLYRAYLAQRKYGVVLDEIKPS----SAP-------ELQAVRMF 71 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHH-----HHHHHHHHHHHHHTTCHHHHHHHSCTT----SCH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccC--Cchhh-----HHHHHHHHHHHHHCCCHHHHHHHhccc----CCh-------hHHHHHHH
Confidence 3478999999988876554 56531 233345678889999999988766431 112 11222222
Q ss_pred HHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHH
Q 006303 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 162 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
...+...++.++|++.+++++..+..|++...+..++..+...|++++|.+.+++ |.+..++..++..|.+.|++++|.
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3355557889999999999887665566666666666777777777777776666 555566666666666666666666
Q ss_pred HHHHHHHhcCCCCcHHhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 006303 242 RAYDASKKHLSSPNMYIC---RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (651)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (651)
+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------------------------------- 195 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------------------------------- 195 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---------------------------------
Confidence 6666666532 332111 11222223335555555555554433
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH-HHHHHHHHHHC
Q 006303 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLSA 392 (651)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~ 392 (651)
.+.+...++.+..++.+.|++++|...|+++... .+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1345666666777777777777777777776653 23345566666666666666654 45666666654
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=8.6e-14 Score=132.07 Aligned_cols=268 Identities=9% Similarity=0.044 Sum_probs=191.3
Q ss_pred cchHHHHHHHHHHHHhcCCCccc-cchHHHHHHHHhcCCChHHHHHHhhhCCC-CCccHHHHHHHHhhcCCHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVREFGKKRDLVSALRAYD 245 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 245 (651)
.|++..|+..++++.... |.+ ......+.++|...|+++.|...++...+ ...++..+...+...++.++|++.++
T Consensus 12 ~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp TTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 699999999988764432 443 23556678899999999999987766422 22566678888899999999999999
Q ss_pred HHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCChHHHHHHHHHHHHCCCCC
Q 006303 246 ASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMA 322 (651)
Q Consensus 246 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~ 322 (651)
++...+..| +...+..+...+...|++++|++.+++ ..+...+..+...+ .|+.++|.+.|+++.+.. |
T Consensus 90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 988766545 566777778889999999999999886 23455555555543 378888888888887763 4
Q ss_pred CHHhH---HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHH
Q 006303 323 DMASY---NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (651)
Q Consensus 323 ~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 399 (651)
+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++++... +-+..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 43211 12334444558888888888888864 35677788888888888899999998888888764 33777
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006303 400 TWSSLINACANAGLVEQ-AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
++..++..+...|+.++ +.++++++.+.. +.++. +.+...+.+.++++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChH----HHHHHHHHHHHHHHHHHc
Confidence 88888888888888765 567888887764 22332 233444555555554433
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=3.8e-13 Score=138.37 Aligned_cols=332 Identities=11% Similarity=-0.012 Sum_probs=164.6
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcC------CCC-cHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL------SSP-NMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIY 292 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~ 292 (651)
.+|+.+...|...|++++|...+++..+.. ..+ ...++..+..++... +++++|++.|++..+..+. +..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~ 173 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPE 173 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHH
Confidence 445566666666666666666666554310 001 233444444444333 3466666666666554221 122
Q ss_pred HHHHHHHh-----hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHhhhcCCccccH
Q 006303 293 VFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (651)
Q Consensus 293 ~~~~ll~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 363 (651)
.+..+..+ ..++.++|++.+++..+.. +.+...+..+...+.. .|++++|.+.+++.... .+.+.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~ 247 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-----APGVT 247 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-----CSSCH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-----CccHH
Confidence 22222111 1145555666666655543 2234444444444333 34556666666666553 23445
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN-------------------AGLVEQAMHLFEEM 424 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------------------~g~~~~a~~~~~~~ 424 (651)
..+..+...|...|++++|...+++..+... -+..++..+..+|.. .+..+.|...+++.
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5666666677777777777777766665432 244455555444432 12356677777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccc
Q 006303 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504 (651)
Q Consensus 425 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (651)
.+.. +.+...+..+..+|...|++++|.+.|++......
T Consensus 327 ~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~---------------------------------------- 365 (472)
T 4g1t_A 327 DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL---------------------------------------- 365 (472)
T ss_dssp HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC----------------------------------------
T ss_pred hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC----------------------------------------
Confidence 6654 33444667777788888888888888887664321
Q ss_pred cccccccCCCH--HHHHH---HHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 006303 505 FDKRFSFKPTT--TTYNI---LMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM 579 (651)
Q Consensus 505 ~~~~~~~~~~~--~~~~~---ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (651)
.+.. ..+.. +.....++.++|...|.+..+. .|+...... ..+.+.+++++..+.+
T Consensus 366 -------~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~- 426 (472)
T 4g1t_A 366 -------TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN- 426 (472)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-
T ss_pred -------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-
Confidence 1111 11111 1111224677888888887773 444332221 1233445555555532
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHH
Q 006303 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQPNLVTY 621 (651)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 621 (651)
+.+..+|..+...|...|++++|++.|++.++.+ ..|+..+|
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 3356788888888888888888888888887543 33444443
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.65 E-value=1.2e-15 Score=147.54 Aligned_cols=313 Identities=9% Similarity=0.054 Sum_probs=101.4
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
+.|+.++|.+++++.+.+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~-~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP-AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345566677776666433 46777777777777777777777442 45556666666666667777776655544
Q ss_pred HhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc
Q 006303 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (651)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 362 (651)
++. . +++.+.+.++.+|.+.|+++++.++++ .|+
T Consensus 88 rk~--~---------------------------------~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn 121 (449)
T 1b89_A 88 RKK--A---------------------------------RESYVETELIFALAKTNRLAELEEFIN-----------GPN 121 (449)
T ss_dssp --------------------------------------------------------CHHHHTTTTT-----------CC-
T ss_pred HHh--C---------------------------------ccchhHHHHHHHHHHhCCHHHHHHHHc-----------CCc
Confidence 432 2 234444455555555555555444442 134
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
..+|+.+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~a 186 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 186 (449)
T ss_dssp ---------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHH
Confidence 445555555555555555555555543 23555555555555555555555544 144555555555
Q ss_pred HHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHH
Q 006303 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 522 (651)
|...|+++.|......+. +.|+. ...++
T Consensus 187 Cv~~~ef~lA~~~~l~L~--------------------------------------------------~~ad~--l~~lv 214 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIV--------------------------------------------------VHADE--LEELI 214 (449)
T ss_dssp HHHTTCHHHHHHTTTTTT--------------------------------------------------TCHHH--HHHHH
T ss_pred HHHcCcHHHHHHHHHHHH--------------------------------------------------hCHhh--HHHHH
Confidence 555555555532221110 01111 11233
Q ss_pred HHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcC--CChHHHHHHHHHHHHCCCCC------CHHHHHHHHHH
Q 006303 523 KACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS--GNVEGALQILKIMREDGMSP------DVVAYTTAIKV 592 (651)
Q Consensus 523 ~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~~ 592 (651)
..|. +.++++..+++...... +-....|+-|..+|++- +++.+.++.|..- .+++| +...|..+.-.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHH
Confidence 3332 23444444444444332 34667788887777765 3344444444321 23333 45568888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643 (651)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 643 (651)
|.+.++++.|.. .|.+. .|+...-..+.....+..+.+---+++..
T Consensus 292 y~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~f 337 (449)
T 1b89_A 292 YDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQF 337 (449)
T ss_dssp HHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHH
Confidence 888899887765 55544 34433334444555566666554444333
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=3.2e-13 Score=122.27 Aligned_cols=201 Identities=11% Similarity=-0.033 Sum_probs=149.9
Q ss_pred CCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 006303 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (651)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (651)
+|++..++..+...+.+.|++++|+..|++..+..+ .+...+..+..++.+.|++++|+..|++..+.. |
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P------- 70 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--P------- 70 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------
Confidence 356677888888899999999999999999887432 367788888899999999999999998887652 1
Q ss_pred HHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhhhcCCccccHHH
Q 006303 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (651)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 365 (651)
.+...+..+..++... |++++|+..|++..+. .+-+...
T Consensus 71 -------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~ 120 (217)
T 2pl2_A 71 -------------------------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL 120 (217)
T ss_dssp -------------------------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred -------------------------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence 2444555555555555 8999999999998874 2345678
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
+..+..+|...|++++|+..|++..+.. .+...+..+..++...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 8889999999999999999999998876 588889999999999999999999999998875 4567788888889999
Q ss_pred cCChhHHHHHHHHhh
Q 006303 446 ACQFDRAFRLFRSWT 460 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~ 460 (651)
.|++++|+..|++..
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999999887654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.7e-12 Score=119.93 Aligned_cols=223 Identities=13% Similarity=0.029 Sum_probs=169.9
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--cc----HHHHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LN----IYVFN 295 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~----~~~~~ 295 (651)
..+..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|+..++...+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777888888888888888887765 66777888888888888888888888877664211 11 34444
Q ss_pred HHHHhh--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHH
Q 006303 296 SLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (651)
Q Consensus 296 ~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (651)
.+...+ .|++++|...|++..... |+. ..+...|++++|.+.++.+... .+.+...+..+...+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV-----NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc-----CcchHHHHHHHHHHH
Confidence 444443 378888888888887743 442 3456678889999999988763 233456788888999
Q ss_pred HcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006303 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (651)
Q Consensus 374 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (651)
...|++++|...++++.... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..+|.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999988764 3367888899999999999999999999998875 456778888999999999999999
Q ss_pred HHHHHhhhc
Q 006303 454 RLFRSWTLS 462 (651)
Q Consensus 454 ~~~~~~~~~ 462 (651)
..+++....
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887654
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=5.3e-13 Score=130.94 Aligned_cols=247 Identities=10% Similarity=-0.036 Sum_probs=138.0
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcC-hhHHHHHHHHHHHcCCCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR-IDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~a~~~l~~~~~~~~~~~~~ 149 (651)
...+..+...+...|++++|+..|+++++. .|+. ..++..++..+...|+ +++|+..|+++++. .|+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~ 166 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAAN------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNY 166 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccC------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCH
Confidence 445555556666666666666666666655 4442 3333444444555564 66666666666552 23221
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (651)
..+......+...|++++|+..|++++... |.+..+|..+..
T Consensus 167 ------~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--------------------------------P~~~~a~~~lg~ 208 (382)
T 2h6f_A 167 ------QVWHHRRVLVEWLRDPSQELEFIADILNQD--------------------------------AKNYHAWQHRQW 208 (382)
T ss_dssp ------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------------------------------TTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------------------------ccCHHHHHHHHH
Confidence 112222222333455555555555555533 444456666666
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh-cCCHHHH-----HHHHHHHHhCCCcccHHHHHHHHHhhc-
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKS-----RAIYEDLRSQNVTLNIYVFNSLMNVNA- 302 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~g~~~~~~~~~~ll~~~~- 302 (651)
++.+.|++++|+..|+++++... -+..+|+.+..++.. .|..++| ++.|++....... +...|+.+-.++.
T Consensus 209 ~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD 286 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHc
Confidence 66667777777777777766432 245667777776666 4444555 3666666554322 3344444444333
Q ss_pred -C--ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---------CHHHHHHHHHHH-HHhhhcCCccccHHHHHHH
Q 006303 303 -H--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG---------NTVLAQEIYGEV-KHLEAKGVLKLDVFTYSTI 369 (651)
Q Consensus 303 -~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~l 369 (651)
| ++++|++.+.++ +. .+.+...+..+..+|.+.| .+++|.++|+.+ .+. -+.....|..+
T Consensus 287 ~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~-----DP~r~~~w~~~ 359 (382)
T 2h6f_A 287 RGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK-----DTIRKEYWRYI 359 (382)
T ss_dssp TCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT-----CGGGHHHHHHH
T ss_pred cCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh-----CchhHHHHHHH
Confidence 2 466677777666 22 2446778888888888864 258899999988 552 12234456655
Q ss_pred HHHHH
Q 006303 370 VKVFA 374 (651)
Q Consensus 370 ~~~~~ 374 (651)
...+.
T Consensus 360 ~~~l~ 364 (382)
T 2h6f_A 360 GRSLQ 364 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=9e-12 Score=116.35 Aligned_cols=222 Identities=11% Similarity=0.073 Sum_probs=124.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC--CC----
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PN---- 397 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~---- 397 (651)
...+..+...+...|++++|...|+++.+. . .+...+..+..++...|++++|...++++.+.... ++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL-----H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 445666666677777777777777766653 1 45566666666677777777777777666653211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchh
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (651)
..++..+...+.+.|++++|...|+++.+. .|+. ..+.+.|++++|...++++....
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-------------- 135 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-------------- 135 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC--------------
Confidence 355666666666666666666666666653 5553 23444555666666666554321
Q ss_pred hhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006303 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILI 555 (651)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li 555 (651)
+.+...+..+...+. +++++|...++++.+.. +.+..++..+.
T Consensus 136 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 180 (258)
T 3uq3_A 136 ----------------------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRA 180 (258)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ----------------------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 112223333333332 35556666666555532 12445555555
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 556 DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
..|...|++++|...+++..+.. +.+...|..+...+.+.|++++|.+.+++..
T Consensus 181 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 181 AALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666666666655532 1235555555566666666666666665554
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=2.4e-12 Score=116.54 Aligned_cols=208 Identities=12% Similarity=0.000 Sum_probs=135.3
Q ss_pred cccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
+++...+..+...+.+.|++++|...|++.++... .+...+..+..++.+.|++++|...|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45666777788888888888888888888877643 367778888888888888888888888888764 4456667777
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHH
Q 006303 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519 (651)
Q Consensus 440 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (651)
..++.+.+.. ....
T Consensus 80 g~~~~~~~~~--------------------------------------------------------------~~~~---- 93 (217)
T 2pl2_A 80 SEAYVALYRQ--------------------------------------------------------------AEDR---- 93 (217)
T ss_dssp HHHHHHHHHT--------------------------------------------------------------CSSH----
T ss_pred HHHHHHhhhh--------------------------------------------------------------hhhh----
Confidence 7766665100 0000
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006303 520 ILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL 599 (651)
Q Consensus 520 ~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 599 (651)
..-.+++++|...+++..+.. +-+...+..+...|...|++++|...|++..+.. .+...+..+..+|...|++
T Consensus 94 ---~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 94 ---ERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRL 167 (217)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCH
T ss_pred ---cccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCH
Confidence 000134455555555555532 1245677777888888888888888888888765 5777888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 600 KQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 600 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
++|...|++..+.. +-+...+..+..++.+.|++++|.+.++
T Consensus 168 ~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 168 DEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888888887642 3356677777788888888888776544
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=1.3e-11 Score=125.08 Aligned_cols=271 Identities=13% Similarity=0.036 Sum_probs=144.3
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCCh---HHHHHHhhhCC-CCCccHHHHHHHHhhcC----
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIVP-RADILFCNFVREFGKKR---- 235 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~-~~~~~~~~l~~~~~~~g---- 235 (651)
.+.+.|++++|+..|++..+.+ +..++..++..+...|++ ++|..+|.+.- .++.++..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 3344799999999999998754 445566677777777777 78888877652 25566777777555544
Q ss_pred -CHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCcccHHHHHHHHHhhcC----ChHH
Q 006303 236 -DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM---KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKF 307 (651)
Q Consensus 236 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~ 307 (651)
++++|++.|++..+.|. ..++..|...|...+..+ ++.+.+......|. +.....-..+....+ +.+.
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TTHHHHHHHHHHHHTCGGGGHHH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCcccCHHH
Confidence 77888888888887543 226666777776655433 33444444443333 222222222222223 2333
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc----cCHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAG---NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWWQ 380 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 380 (651)
+..++..... .++..+..|...|...| +.++|.+.|+..... | +++...+..+...|... ++++
T Consensus 164 a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~---g--~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 164 VERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR---G--TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp HHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---T--CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC---C--CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 3333333322 23336666777777777 677777777766652 2 34444445555666544 5777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----ChhHH
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINA-C--ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-----QFDRA 452 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-----~~~~a 452 (651)
+|+..|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777766 32 44455555554 3 34667777777777777655 4555555666555 34 66667
Q ss_pred HHHHHHh
Q 006303 453 FRLFRSW 459 (651)
Q Consensus 453 ~~~~~~~ 459 (651)
.+.|++.
T Consensus 307 ~~~~~~A 313 (452)
T 3e4b_A 307 EAHFEKA 313 (452)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 6666654
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=6e-13 Score=125.83 Aligned_cols=243 Identities=12% Similarity=-0.024 Sum_probs=135.3
Q ss_pred cchHHHHHHHHHHHHhcCC--CccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRL--PVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
.|++++|+..++++..... .|.....+..++..+...|++++|...+..+ |.+..++..++..|...|++++|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 6999999999999987532 2334455555666666666666666655542 444555666666666666666666
Q ss_pred HHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC
Q 006303 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~ 321 (651)
+.|+++.+... .+..++..+..+|...|++++|...|+++.+..
T Consensus 98 ~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----------------------------------- 141 (275)
T 1xnf_A 98 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----------------------------------- 141 (275)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------------------------
Confidence 66666655321 234556666666666666666666666655432
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC---CCH
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT---PNT 398 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---~~~ 398 (651)
|+.......+..+...|++++|...++..... .+++...+ .++..+...++.++|...++........ .+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (275)
T 1xnf_A 142 PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLS 215 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccccccc
Confidence 22222223333334556666666666555542 12222222 3555556666666666666665543211 013
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006303 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
..+..+...+.+.|++++|...|+++.+.. |+. +.....++...|++++|++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 556666777777777777777777776553 321 122233455556666665554
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=3.8e-12 Score=118.55 Aligned_cols=202 Identities=13% Similarity=-0.006 Sum_probs=144.6
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
|......+..++..+...|++++|+..|++++.. .|. ...++..++..+...|++++|+..++++.+.. |
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~ 102 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPS------SADAHAALAVVFQTEMEPKLADEEYRKALASD--S 102 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c
Confidence 4434778899999999999999999999999988 554 24455667888999999999999999999853 3
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCc
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI 222 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~ 222 (651)
+. ...+...+..+...|++++|+..++++...+..|.....+..++..+...|++++|...+... |.+..
T Consensus 103 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (252)
T 2ho1_A 103 RN------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176 (252)
T ss_dssp TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred Cc------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence 22 122333334556689999999999999873334555666666777777777777777766553 44556
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
++..++..|...|++++|...++.+.+... .+...+..+...+...|++++|.+.++.+.+.
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666677777777777777777777665322 34556666666777777777777777776654
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.2e-11 Score=116.49 Aligned_cols=245 Identities=9% Similarity=0.013 Sum_probs=185.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC--CHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP--NTIT 400 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~ 400 (651)
|...+......+...|++++|...|+++.+. .+.+...+..+..+|...|++++|+..++++.+.+..+ ....
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAK-----KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHT-----TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHH
Confidence 3445666778888999999999999998873 23345588888999999999999999999998743222 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhh
Q 006303 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (651)
Q Consensus 401 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (651)
|..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...|++.....
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------- 138 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT----------------- 138 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-----------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-----------------
Confidence 8889999999999999999999998875 4466788899999999999999999998876431
Q ss_pred hhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHH-HHHh-hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006303 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM-KACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (651)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 558 (651)
+.+...|..+. ..+. .++++|...++++.+.. +.+...+..+...+
T Consensus 139 -------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 139 -------------------------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARAN 186 (272)
T ss_dssp -------------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred -------------------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 33455566555 4444 48999999999998853 22467777788888
Q ss_pred hcCCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 006303 559 GGSGN---VEGALQILKIMREDG-MSPD------VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL-VTYITL 624 (651)
Q Consensus 559 ~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 624 (651)
...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.+.|++..+. .|+. ..+..+
T Consensus 187 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l 261 (272)
T 3u4t_A 187 AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGL 261 (272)
T ss_dssp HHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHh
Confidence 88888 888999998887631 1233 257788899999999999999999999865 3544 333333
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=8.5e-11 Score=110.80 Aligned_cols=222 Identities=12% Similarity=0.021 Sum_probs=170.2
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (651)
..++..+...|...|++++|++.|++..+. .+..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 355666777777778888888888777762 345667777777777 788888888888777765 3333333
Q ss_pred HHH--hh----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHhhhcCCccccHHHH
Q 006303 297 LMN--VN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (651)
Q Consensus 297 ll~--~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (651)
+-. .. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|++..+. .+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~ 149 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGC 149 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcHHHH
Confidence 332 23 567888888888877764 67788888888888 89999999999988862 256677
Q ss_pred HHHHHHHHc----ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 367 STIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 367 ~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 788888887 899999999999988864 56778888888888 899999999999988875 3667778
Q ss_pred HHHHHHh----cCChhHHHHHHHHhhhccc
Q 006303 439 LLQACVE----ACQFDRAFRLFRSWTLSKT 464 (651)
Q Consensus 439 ll~~~~~----~g~~~~a~~~~~~~~~~~~ 464 (651)
+..+|.+ .+++++|.+.|++..+.+.
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8888888 8999999999998876653
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=2e-11 Score=115.00 Aligned_cols=225 Identities=14% Similarity=0.031 Sum_probs=148.6
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC---CCCCcc----HHHHHHHHh
Q 006303 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADIL----FCNFVREFG 232 (651)
Q Consensus 160 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~----~~~l~~~~~ 232 (651)
..+..+...|++++|+..++++++.. |.+...+..++..+...|++++|...+..+ +.+... +..+...|.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33445566899999999999998855 677777888888888888888888877664 333333 677888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH-Hhh-cCChHHHHH
Q 006303 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVN-AHDLKFTLE 310 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~-~~~~~~a~~ 310 (651)
..|++++|++.|++..+... .+..++..+...|...|++++|+..|++..+.... +...|..+- ..+ .++++.|..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887432 35667888888888888888888888887766221 333333333 322 246677777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHhhhcCCcccc------HHHHHHHHHHHHcccCHHH
Q 006303 311 VYKNMQKLGVMADMASYNILLKACCLAGN---TVLAQEIYGEVKHLEAKGVLKLD------VFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~ 381 (651)
.|++..+.. +.+...+..+..++...|+ +++|...|+++.+..... |+ ...|..+...|...|++++
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---GAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG---GGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 777666543 2235555556666666666 666666666665532111 22 1345555556666666666
Q ss_pred HHHHHHHHHHC
Q 006303 382 ALKVKEDMLSA 392 (651)
Q Consensus 382 a~~~~~~m~~~ 392 (651)
|...|+++.+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 66666666554
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=2.3e-12 Score=121.73 Aligned_cols=220 Identities=9% Similarity=-0.082 Sum_probs=147.4
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+...|++++|+..++++.+.....++ .....+......+...|++++|+..|++++... |.+...+..++..+.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDD----ERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCc----hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 45679999999999999985321111 123334444456667899999999999999865 778888999999999
Q ss_pred cCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 006303 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (651)
..|++++|...+..+ |.+..++..++..|.+.|++++|++.|+++.+. .|+.......+..+...|++++|...
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999998774 677889999999999999999999999999984 35444444455555677899999999
Q ss_pred HHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 279 YEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVM---ADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 279 ~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+......... +...+. +...+. ++.+.|...+......... .+...+..+...+...|++++|...|+++..
T Consensus 167 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 167 LKQHFEKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8777654321 222222 111111 3444455555544332100 0123444455555555555555555555543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=3.4e-11 Score=111.97 Aligned_cols=208 Identities=14% Similarity=0.028 Sum_probs=144.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
...+..+...+...|++++|.+.|+++... .+.+...+..+...|...|++++|...++++.+.. +.+...+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHH
Confidence 455666777777778888888887777663 23456667777777777777777777777777653 225666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 404 LINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 404 ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
+...+...|++++|.++++++.+.+..| +...+..+..+|.+.|++++|.+.+++....
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------------- 170 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-------------------- 170 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------
Confidence 7777777777777777777776622233 3445666666777777777777776654422
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCC
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 562 (651)
. +.+...+..+...|...|
T Consensus 171 ------------------------------------------------------------~-~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 171 ------------------------------------------------------------N-RNQPSVALEMADLLYKER 189 (252)
T ss_dssp ------------------------------------------------------------C-SCCHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------------------------C-cccHHHHHHHHHHHHHcC
Confidence 1 124566777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (651)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 621 (651)
++++|..+++++.+.. ..+...+..+...+...|++++|.++++++.+. .|+...+
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 8888888888887753 346677778888888888999998888888764 3554443
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=5e-11 Score=112.37 Aligned_cols=219 Identities=16% Similarity=0.056 Sum_probs=164.8
Q ss_pred cchHHHHHHHHhcCCChHHHHHHhhhC--CCCCccHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 006303 191 LDEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIID 264 (651)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (651)
...+..++..+...|++++|...|.+. +.+..++..+...|.. .+++++|++.|++..+.+ +..++..+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 334445555555555555555555443 3344666777777777 888888888888887754 5677778888
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh--h----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006303 265 VCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N----AHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (651)
Q Consensus 265 ~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (651)
.|.. .+++++|+..|++..+.+ +...+..+-.. . .+++++|+..|++..+.+ +...+..+...|
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 8888 888888888888887765 33334333332 3 568888888888888765 567777888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 335 CL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 335 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
.. .+++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL-------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 88 89999999999998862 356778888889988 999999999999999875 3677888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 006303 407 ACAN----AGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 407 ~~~~----~g~~~~a~~~~~~~~~~~ 428 (651)
.|.+ .+++++|.+.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8988 899999999999998875
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=5.3e-11 Score=108.41 Aligned_cols=211 Identities=9% Similarity=-0.054 Sum_probs=140.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|.+.|+.+.+. .+.+...+..+...|...|++++|...++++.... +.+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 80 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS-----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINN 80 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHH
Confidence 4556667777777777777777777777663 23346667777777777777777777777776653 23566677
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhh
Q 006303 403 SLINACANA-GLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (651)
Q Consensus 403 ~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (651)
.+...+... |++++|...++++.+.+..|+ ...+..+..++.+.|++++|...++++....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------- 143 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ----------------- 143 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence 777777777 777777777777776222232 4556666667777777777777766544321
Q ss_pred hhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 006303 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (651)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 560 (651)
+.+...+..+...|..
T Consensus 144 ----------------------------------------------------------------~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 144 ----------------------------------------------------------------PQFPPAFKELARTKML 159 (225)
T ss_dssp ----------------------------------------------------------------TTCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------CCCchHHHHHHHHHHH
Confidence 1235566677777777
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYI 622 (651)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 622 (651)
.|++++|..+++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+.....
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 8888888888888776432135666777777777888888888888877643 35544433
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=4e-12 Score=127.75 Aligned_cols=319 Identities=14% Similarity=0.010 Sum_probs=215.0
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|+++++. .|.... ....++..++..+...|++++|+..+++..+..... ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cc
Confidence 556677888899999999999999999988 333211 123556778888999999999999999987641000 00
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
.......+......+...|++++|+..+++.+.......+ .. ....++..+...
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~----------~~~~~~~~l~~~ 136 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KV----------GEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------------HH----------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----------------cc----------chHHHHHHHHHH
Confidence 1112333444445566688999999888887653210000 00 001456677788
Q ss_pred HhhcCC--------------------HHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 231 FGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 231 ~~~~g~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
|...|+ +++|++.+++..+. +..+ ...++..+...|...|++++|+..+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888 88888888766542 1112 2456788888888999999999888876542
Q ss_pred CCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cH
Q 006303 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DV 363 (651)
Q Consensus 286 g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 363 (651)
... .+. .....++..+...+...|++++|...+++...........+ ..
T Consensus 217 --------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 217 --------------------------AKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp --------------------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HHh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 110 000 01134677888899999999999999998876543221111 15
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GCE-PNS 433 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~ 433 (651)
.++..+...|...|++++|...+++....... .+ ..++..+...|...|++++|...+++..+. +.. ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 57888899999999999999999888753111 12 457888889999999999999999987653 111 123
Q ss_pred HHHHHHHHHHHhcCChh
Q 006303 434 QCCNILLQACVEACQFD 450 (651)
Q Consensus 434 ~~~~~ll~~~~~~g~~~ 450 (651)
.++..+...+...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 45666777777777664
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=3.1e-11 Score=109.97 Aligned_cols=198 Identities=8% Similarity=-0.092 Sum_probs=108.4
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH--h
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--V 300 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~--~ 300 (651)
++..++..+...|++++|++.|+++.+... .+..++..+...+...|++++|.+.++++.+.... +...+..+.. .
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 344445555555555555555555544321 23444555555555555555555555555443211 1122222211 1
Q ss_pred hc-CChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccC
Q 006303 301 NA-HDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (651)
Q Consensus 301 ~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (651)
.. |++++|...++++.+.+..| +...+..+...+...|++++|.+.|+++.+. .+.+...+..+...+...|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-----QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTC
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 22 33444444444443311122 2456666777777777777777777777653 13345667777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 379 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
+++|..+++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777766532135566666666667777777777777777654
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=1.7e-11 Score=120.16 Aligned_cols=215 Identities=10% Similarity=0.029 Sum_probs=133.3
Q ss_pred CCCccHHHHHHHHhhcCC-HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 219 RADILFCNFVREFGKKRD-LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
.+..+|+.+...+...|+ +++|+..|+++++... .+..+|+.+..++...|++++|+..|+++.+.... +...|..+
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~l 206 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHR 206 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHH
Confidence 334455555555555564 6666666666655321 24555666666666666666666666665554322 23333333
Q ss_pred HHhh--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhhhcCCccccHHHHHHH
Q 006303 298 MNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL-AGNTVLA-----QEIYGEVKHLEAKGVLKLDVFTYSTI 369 (651)
Q Consensus 298 l~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (651)
-.++ .|++++|+..|+++++.. +-+...|+.+..++.. .|..++| ++.|++...+ .+-+...|+.+
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l 280 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYL 280 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHH
Confidence 3322 255566666666665543 2367788888888888 5655777 4778887774 24456788888
Q ss_pred HHHHHccc--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCCCCCHHHHH
Q 006303 370 VKVFADAK--WWQMALKVKEDMLSAGVTPNTITWSSLINACANAG---------LVEQAMHLFEEM-LQAGCEPNSQCCN 437 (651)
Q Consensus 370 ~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~ 437 (651)
...+...| ++++|+..+.++ +. .+.+...+..+..+|.+.| ..++|.++|+++ .+.+ +.....|.
T Consensus 281 ~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~ 357 (382)
T 2h6f_A 281 KGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWR 357 (382)
T ss_dssp HHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHH
T ss_pred HHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHH
Confidence 88888877 688999988887 33 2446778888888888864 258899999998 5543 23344555
Q ss_pred HHHHHHH
Q 006303 438 ILLQACV 444 (651)
Q Consensus 438 ~ll~~~~ 444 (651)
.+...+.
T Consensus 358 ~~~~~l~ 364 (382)
T 2h6f_A 358 YIGRSLQ 364 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=4.7e-11 Score=121.03 Aligned_cols=307 Identities=10% Similarity=-0.015 Sum_probs=197.2
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchH---HHHHHHHHHHHhcCCCccccchH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEV---EMFVGLMEVLEEFRLPVKELDEE 194 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~ 194 (651)
.++..+.+.|++++|+.+|++..+.|..+ .. ..+-.++ ...|+. ++|+..|++.... +...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~-A~--~~Lg~~y-------~~~g~~~d~~~A~~~~~~A~~~-----~~~A~ 72 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSE-AQ--VGLADIQ-------VGTRDPAQIKQAEATYRAAADT-----SPRAQ 72 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCT-GG--GTCC----------------------------------------CH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHH-HH--HHHHHHH-------HccCCCCCHHHHHHHHHHHHhC-----CHHHH
Confidence 34566789999999999999998876322 11 1111122 224666 9999999998753 45567
Q ss_pred HHHHHHHhcCC-----ChHHHHHHhhhC--CCCCccHHHHHHHHhhcCCHHH---HHHHHHHHHhcCCCCcHHhHHHHHH
Q 006303 195 FRIVQLCVNKP-----DVNLAIRYACIV--PRADILFCNFVREFGKKRDLVS---ALRAYDASKKHLSSPNMYICRTIID 264 (651)
Q Consensus 195 ~~l~~~~~~~~-----~~~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (651)
..++..+...+ ++++|..++.+. +.+..++..|...|...++.+. +.+.+......| +...+..|..
T Consensus 73 ~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~ 149 (452)
T 3e4b_A 73 ARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVL 149 (452)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 77888555555 778999998875 5566789999999988765444 455555555433 3557777888
Q ss_pred HHHhcCCHHHHHHH----HHHHHhCCCcccHHHHHHHHHhhcC---ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 006303 265 VCGICGDYMKSRAI----YEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337 (651)
Q Consensus 265 ~~~~~g~~~~a~~~----~~~~~~~g~~~~~~~~~~ll~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 337 (651)
.|...+.++++.+. +...... .|+....-..+....| +.++|++.|++..+.| +++...+..|...|...
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~--~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNT--TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTT--CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC
Confidence 88888865544444 4433322 3343222222333346 8899999999999987 45666666777777655
Q ss_pred ----CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHH-H--HcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 338 ----GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-F--ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 338 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
+++++|.+.|+... +-+...+..+... | ...+++++|+..|++..+.| +...+..|...|.
T Consensus 227 ~~~~~d~~~A~~~~~~aa--------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA--------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY- 294 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG--------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-
T ss_pred CCCCCCHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-
Confidence 79999999999875 1355666777666 4 56899999999999999876 6778888888887
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhh
Q 006303 411 AG-----LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----ACQFDRAFRLFRSWTL 461 (651)
Q Consensus 411 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 461 (651)
.| ++++|...|++.. . -++..+..|...|.. ..++++|...|++..+
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 55 9999999999987 3 356667777776665 2377777777776554
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=2.7e-11 Score=111.95 Aligned_cols=200 Identities=9% Similarity=0.024 Sum_probs=137.8
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
...+..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|+..|+++.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 36677788888889999999999999887432 357788888888889999999999888876542
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|+++
T Consensus 88 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 88 --------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHHHHTSCHH
T ss_pred --------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHH
Confidence 225566777777788888888888888887764 2345667777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
+|...++++.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++|.+.++++.
T Consensus 143 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 143 LALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888877653 2366777778888888888888888888887764 4456677788888888888888888888776
Q ss_pred hc
Q 006303 461 LS 462 (651)
Q Consensus 461 ~~ 462 (651)
..
T Consensus 221 ~~ 222 (243)
T 2q7f_A 221 DI 222 (243)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.41 E-value=1.5e-11 Score=113.68 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=123.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
....|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-----NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp --------------------CCTTHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 4556666777777777888888877777652 23456677777777777888888888877777653 23566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
.+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++....
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------- 155 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN------------------- 155 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------------------
Confidence 77777777788888888777777664 3456667777777777777777777776654321
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCC
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 562 (651)
+.+...+..+...|...|
T Consensus 156 --------------------------------------------------------------~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 156 --------------------------------------------------------------ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp --------------------------------------------------------------TTCHHHHHHHHHHHHHHT
T ss_pred --------------------------------------------------------------CccHHHHHHHHHHHHHcC
Confidence 123445666667777777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
++++|...++++.+.. ..+..++..+...|...|++++|.+.++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777776642 234666777777777777777777777777653
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=1.3e-11 Score=124.29 Aligned_cols=295 Identities=14% Similarity=0.036 Sum_probs=192.6
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcC--CCccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG--VAPLE 148 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~--~~~~~ 148 (651)
...+..++..+...|++++|+..|+++++. .|+... ....++..++..+...|++++|+..+++..+.. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 121 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLR--TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-- 121 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC--
Confidence 455667888889999999999999999998 443211 123456778888999999999999999987741 111
Q ss_pred cccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHH
Q 006303 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (651)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~ 228 (651)
.......+......+...|++++|+..+++.+...... ++. +....++..+.
T Consensus 122 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~----------~~~~~~~~~l~ 173 (411)
T 4a1s_A 122 --RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----------------GDR----------LSEGRALYNLG 173 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------TCH----------HHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----------------hch----------HHHHHHHHHHH
Confidence 11233344444556666899999999888876531000 000 00124566777
Q ss_pred HHHhhcCC-----------------HHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006303 229 REFGKKRD-----------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 229 ~~~~~~g~-----------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 286 (651)
..|...|+ +++|++.+++..+. +..+ ...++..+...|...|++++|+..+++..+.
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 252 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI- 252 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-
Confidence 88888888 88888877766542 1111 2347777888888888888888888776542
Q ss_pred CcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC-ccccHHH
Q 006303 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFT 365 (651)
Q Consensus 287 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 365 (651)
..... .......++..+...|...|++++|.+.|++......... ......+
T Consensus 253 -------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 305 (411)
T 4a1s_A 253 -------------------------AREFG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS 305 (411)
T ss_dssp -------------------------HHHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------HHhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11100 0001134677788888899999999999988876432210 1112456
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGV-----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
+..+...|...|++++|...+++...... .....++..+...|.+.|++++|...|++..+.
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77778888888888888888887764310 011335666777777777777777777777654
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=2.4e-11 Score=122.08 Aligned_cols=308 Identities=14% Similarity=0.001 Sum_probs=201.3
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
..+..+...+...|++++|+..|+++.+...... ..++..+...+...|++++|...+++....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------- 76 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------- 76 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------------
Confidence 3455677888889999999999998888533211 356888888888999999999988876532
Q ss_pred HhhcCChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC-ccccHHHHHHHHHHHHcc
Q 006303 299 NVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADA 376 (651)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 376 (651)
... .+.. ....++..+...+...|++++|...+++......... ......++..+...|...
T Consensus 77 -------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 77 -------------ART---IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp -------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHh---ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 110 0111 1245677788888899999999999988876432210 111144778888888899
Q ss_pred cC--------------------HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C
Q 006303 377 KW--------------------WQMALKVKEDMLSA----GVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-E 430 (651)
Q Consensus 377 ~~--------------------~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~ 430 (651)
|+ +++|...+++.... +.. ....++..+...+...|++++|...+++..+... .
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 99 88888888876542 111 1234677788888889999999998888765311 1
Q ss_pred CC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccc
Q 006303 431 PN----SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506 (651)
Q Consensus 431 ~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (651)
++ ...+..+..+|...|++++|...+++......
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------------------------------ 258 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR------------------------------------------ 258 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH------------------------------------------
Confidence 12 23677778888888999988888876543211
Q ss_pred cccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCC--
Q 006303 507 KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGM-SPD-- 582 (651)
Q Consensus 507 ~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~-- 582 (651)
..+..+ ...++..+...|...|++++|...+++..+... ..+
T Consensus 259 ----------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 259 ----------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp ----------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 000001 134566677777778888888887777665210 111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 006303 583 --VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY----QIQP-NLVTYITLLRARSRYGSL 634 (651)
Q Consensus 583 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~ 634 (651)
..++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 446667777777888888888887776531 2111 134555556666665554
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=2.8e-11 Score=121.80 Aligned_cols=284 Identities=13% Similarity=0.008 Sum_probs=197.1
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
.+..+...+...|++++|+..|+++.+.... +. .++..+...|...|++++|+..|++..+.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 115 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL------------- 115 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------
Confidence 3456778889999999999999999886432 22 47888889999999999999999876542
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC-ccccHHHHHHHHHHHHccc
Q 006303 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAK 377 (651)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 377 (651)
..... ..+....++..+...|...|++++|...|+++........ .+....++..+...|...|
T Consensus 116 -------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 116 -------------AKSMN--DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp -------------HHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHcc--CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 11110 0012345677888889999999999999998876432211 1223457788888999999
Q ss_pred C-----------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC--
Q 006303 378 W-----------------WQMALKVKEDMLSA----GV-TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE-PN-- 432 (651)
Q Consensus 378 ~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~-- 432 (651)
+ +++|+..+++..+. +. .....++..+...+...|++++|...+++..+.... .+
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 9 89998888876542 11 112346777888888999999999998887654210 11
Q ss_pred --HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccc
Q 006303 433 --SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (651)
Q Consensus 433 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (651)
...+..+..+|...|++++|...+++......
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------------------------------------- 294 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV---------------------------------------------- 294 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 22677778888888888888888876543211
Q ss_pred cCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC----CC-CCCHH
Q 006303 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGL-SPNHISWTILIDACGGSGNVEGALQILKIMRED----GM-SPDVV 584 (651)
Q Consensus 511 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~ 584 (651)
..+. .....++..+...|...|++++|..++++..+. +. .....
T Consensus 295 ------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 295 ------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp ------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 0000 012456677778888888888888888887652 10 01134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
++..+...|...|++++|.+++++..+
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 667778888888888888888888764
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=1.6e-11 Score=119.60 Aligned_cols=296 Identities=14% Similarity=0.022 Sum_probs=185.8
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccccc
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~ 151 (651)
..+...+..+...|++++|+..|+++++. .|.... ....++..++..+...|++++|+..+++..+..... ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 79 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ 79 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--ccc
Confidence 34556677888899999999999999988 343211 124556778888999999999999999887641000 001
Q ss_pred chhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHH
Q 006303 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (651)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (651)
......+......+...|++++|+..+++.........+ .. ....++..+...|
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~----------~~~~~~~~l~~~~ 133 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KV----------GEARALYNLGNVY 133 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------ch----------HHHHHHHHHHHHH
Confidence 112233444444566678888888888876542211000 00 0013566677778
Q ss_pred hhcCC--------------------HHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006303 232 GKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 232 ~~~g~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 286 (651)
...|+ +++|++.+++..+. +..+ ...++..+...+...|++++|...+++..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 212 (338)
T 3ro2_A 134 HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI- 212 (338)
T ss_dssp HHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-
Confidence 88888 78888777765432 1111 2446777778888888888888888776532
Q ss_pred CcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHH
Q 006303 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFT 365 (651)
Q Consensus 287 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 365 (651)
..... .......++..+...+...|++++|.+.+++...........+ ...+
T Consensus 213 -------------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 213 -------------------------AKEFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp -------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------HHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 11100 0001234677788888888999999999888876432211111 1446
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGV-----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
+..+...|...|++++|...+++...... .....++..+...+.+.|++++|...+++..+.
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67777788888888888888877754310 011335666677777777777777777776653
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=5.1e-11 Score=118.54 Aligned_cols=302 Identities=10% Similarity=0.069 Sum_probs=185.6
Q ss_pred HhhcCCHHHHHHHHHHHHhcC--C--CCcHHhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCcccHH-
Q 006303 231 FGKKRDLVSALRAYDASKKHL--S--SPNMYICRTIIDV--CGICGDYMKSR-----------AIYEDLRSQNVTLNIY- 292 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~g~~~~~~- 292 (651)
+.+.+++++|..+++++.+.. . .++...|-.++.. ....++++.+. +.++.+.......+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 356788888888888776532 1 1233333333322 11223333333 5555543321111110
Q ss_pred H-H----HHHHHhhcCChHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc--c
Q 006303 293 V-F----NSLMNVNAHDLKFTLEVYKNMQKL----GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL--K 360 (651)
Q Consensus 293 ~-~----~~ll~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 360 (651)
. | ........|+++.|...|++.... +-.+ ...++..+...|...|++++|...+++.......... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 0 0 122222347888888888887653 1111 2457788888888999999999999888875433211 1
Q ss_pred ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 006303 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GC-E 430 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~ 430 (651)
....+++.+...|...|++++|+..+++..+.... ++ ..++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12346778888889999999999988887743111 11 246778888888999999999998888762 22 3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccc
Q 006303 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (651)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (651)
....++..+..+|.+.|++++|...+++.....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------------------- 294 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS----------------------------------------------- 294 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 335567888888888899999988887654321
Q ss_pred cCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHCCCCCC-HHHH
Q 006303 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPD-VVAY 586 (651)
Q Consensus 511 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~ 586 (651)
... +-......+..+...|...|+ +++|..++++. +..|+ ...+
T Consensus 295 --------------------------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 295 --------------------------QKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp --------------------------HHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred --------------------------HHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 110 011112234556777777887 66666666554 22222 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 587 TTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
..+...|...|++++|.+++++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777888888888888888887763
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1e-10 Score=113.81 Aligned_cols=284 Identities=13% Similarity=-0.013 Sum_probs=193.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
+......+...|++++|+..|+++.+...... ..++..+...+...|++++|.+.+++..+.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 72 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL--------------- 72 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------
Confidence 34457778889999999999999888543211 367888888899999999999998876532
Q ss_pred hcCChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc-cccHHHHHHHHHHHHcccC
Q 006303 301 NAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKW 378 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 378 (651)
.... +.. ....++..+...+...|++++|.+.+++.......... .....++..+...|...|+
T Consensus 73 -----------~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 73 -----------ARTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp -----------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhcc---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 1111 101 12456777888899999999999999988775432211 1113477788888888999
Q ss_pred --------------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC
Q 006303 379 --------------------WQMALKVKEDMLSA----GV-TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-EPN 432 (651)
Q Consensus 379 --------------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 432 (651)
+++|...+++.... +. .....++..+...+...|++++|...+++..+... .++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 88888888776532 11 11234677777788888888888888887765310 011
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccc
Q 006303 433 ----SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (651)
Q Consensus 433 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (651)
...+..+...+...|++++|...+++......
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------------------- 254 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR-------------------------------------------- 254 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 22566677777788888888887776542210
Q ss_pred cccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC----CCC-CC
Q 006303 509 FSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS-PNHISWTILIDACGGSGNVEGALQILKIMRED----GMS-PD 582 (651)
Q Consensus 509 ~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~ 582 (651)
..+.. ....++..+...|...|++++|...+++..+. +-. ..
T Consensus 255 --------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 255 --------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp --------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred --------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 00000 12446777888888899999999998887652 111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
..++..+...|.+.|++++|.+++++..+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 446777888889999999999999888753
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=1.8e-10 Score=117.61 Aligned_cols=197 Identities=9% Similarity=-0.081 Sum_probs=130.1
Q ss_pred CccHHHHHHHHhhcCCH-HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 006303 221 DILFCNFVREFGKKRDL-VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 299 (651)
...+..+...|...|++ ++|++.|++..+... .+..+|..+..+|...|++++|++.|++..+..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 167 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC------------- 167 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------
Confidence 35566677777888888 888888888877432 246788888888888888888888888877652
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHH
Q 006303 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA---------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (651)
|+...+..+...+... |++++|.+.|++..+. .+.+...|..+.
T Consensus 168 ----------------------p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg 220 (474)
T 4abn_A 168 ----------------------KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLDGRSWYILG 220 (474)
T ss_dssp ----------------------CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Confidence 3334444455555555 6667777777766653 233455666666
Q ss_pred HHHHcc--------cCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006303 371 KVFADA--------KWWQMALKVKEDMLSAGVT--PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (651)
Q Consensus 371 ~~~~~~--------~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (651)
.+|... |++++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~ 299 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 666666 6677777777776664320 256667777777777777777777777766654 33455566666
Q ss_pred HHHHhcCChhHHHHHHHHh
Q 006303 441 QACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~ 459 (651)
.++...|++++|++.+.++
T Consensus 300 ~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 6666666666666655443
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=3.8e-08 Score=103.21 Aligned_cols=425 Identities=11% Similarity=0.040 Sum_probs=275.1
Q ss_pred HHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCC---HHHHHHHHHH
Q 006303 174 FVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRD---LVSALRAYDA 246 (651)
Q Consensus 174 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 246 (651)
.+..|++.+..+ |.+...|..++..+.+.+.++.+..+|++ +|.....|...+..-.+.++ ++.+..+|+.
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 344455555544 78888999999999888999988877665 47788888888888888888 9999999999
Q ss_pred HHhcCC-CCcHHhHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-ccc-HHHHHHHHHhhc-----------C
Q 006303 247 SKKHLS-SPNMYICRTIIDVCGICGDY--------MKSRAIYEDLRS-QNV-TLN-IYVFNSLMNVNA-----------H 303 (651)
Q Consensus 247 ~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~ll~~~~-----------~ 303 (651)
.+.... .|+...|...+....+.++. +.+.++|+.... .|. .++ ...|...+.... +
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 988542 37788888888766655543 334577776554 365 443 467777776421 2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHhhhcCC---cc-------
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCL-------------AGNTVLAQEIYGEVKHLEAKGV---LK------- 360 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~~~~~~---~~------- 360 (651)
+.+.+..+|++........-..+|......-.. ..+++.|...+..+..... +. ++
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~-~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK-GLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSSSTTCC
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHhhccccccccch
Confidence 456788888888753211112333222111111 1123445555555443221 10 00
Q ss_pred ----c-----c---HHHHHHHHHHHHccc-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HH
Q 006303 361 ----L-----D---VFTYSTIVKVFADAK-------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM-HL 420 (651)
Q Consensus 361 ----~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~ 420 (651)
| + ...|...+.---..+ ..+.+..+|++++.. ++-+...|...+..+.+.|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 0 134555544332222 134566788888865 3447888988888888999999997 99
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCC
Q 006303 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500 (651)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (651)
|++.... ++.+...|-..+....+.|++++|.++|+++....... ......
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~------------~~~~~~---------------- 417 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD------------LAALME---------------- 417 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------HHHHHH----------------
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH------------hhhhhh----------------
Confidence 9999875 34566677778888889999999999999887531000 000000
Q ss_pred cccccccccccCC------------CHHHHHHHHHHHh--hcHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhcC-CCh
Q 006303 501 HYSSFDKRFSFKP------------TTTTYNILMKACC--TDYYRVKALMNEMRTV-GLSPNHISWTILIDACGGS-GNV 564 (651)
Q Consensus 501 ~~~~~~~~~~~~~------------~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-g~~ 564 (651)
-.| ....|...+.... ++.+.|..+|..+.+. +. .....|...+..-.+. ++.
T Consensus 418 ----------~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 418 ----------DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp ----------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCC
T ss_pred ----------ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCH
Confidence 012 1224555555443 3688999999999875 21 1233343333333344 559
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP--NLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 565 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
+.|.++|+..++. ..-+...|..++......|+.+.|..+|++.....-.+ ....|..++..=.+.|+.+.+.++.+
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999885 34467778889998889999999999999998653222 34688889988889999888777444
Q ss_pred H
Q 006303 643 V 643 (651)
Q Consensus 643 ~ 643 (651)
-
T Consensus 566 R 566 (679)
T 4e6h_A 566 R 566 (679)
T ss_dssp H
T ss_pred H
Confidence 3
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=1.1e-08 Score=107.11 Aligned_cols=448 Identities=8% Similarity=0.014 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhh
Q 006303 88 EEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD 167 (651)
Q Consensus 88 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (651)
.+.+..|++.+.. .|..+ .....++......+.++.+..+|+++.. ..|... ....+-+....+
T Consensus 49 ~d~i~~lE~~l~~--np~d~------~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~------~lW~~Yi~~E~~ 112 (679)
T 4e6h_A 49 SDVIGKLNDMIEE--QPTDI------FLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMA------NIWCMRLSLEFD 112 (679)
T ss_dssp SCHHHHHHHHHHH--CTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH--CcCCH------HHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCH------HHHHHHHHHHHh
Confidence 3456667777777 56533 3334445556678899999999999998 445332 223333334445
Q ss_pred cch---HHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCCh----HHH----HHHhhh--------CCCCCccHHHHH
Q 006303 168 SGE---VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV----NLA----IRYACI--------VPRADILFCNFV 228 (651)
Q Consensus 168 ~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A----~~~~~~--------~~~~~~~~~~l~ 228 (651)
.++ ++.+..+|++.+.....+++...|...+....+.++. +++ .++|+. -+.+...|...+
T Consensus 113 ~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 113 KMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYL 192 (679)
T ss_dssp C--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred hCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 677 9999999999987552235666676666544443332 122 233332 122223444444
Q ss_pred HHHh---------hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 006303 229 REFG---------KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (651)
Q Consensus 229 ~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 299 (651)
.... .+++++.+.++|+.++......-..+|......-...+. ..+..++.+
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e------------------ 253 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE------------------ 253 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH------------------
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH------------------
Confidence 3322 233455666666666642110011222211111000000 001111111
Q ss_pred hhcCChHHHHHHHHHHHH--CCC----C-----------C-----C---HHhHHHHHHHHHhcC-------CHHHHHHHH
Q 006303 300 VNAHDLKFTLEVYKNMQK--LGV----M-----------A-----D---MASYNILLKACCLAG-------NTVLAQEIY 347 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~--~~~----~-----------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~ 347 (651)
...+++.|...+.++.. .++ + | + ...|...+..--..+ ..+.+..+|
T Consensus 254 -~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 254 -LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 01122233333333211 011 0 0 0 123333333222211 123455677
Q ss_pred HHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL-KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
++.... .+-+...|-..+..+...|+.++|. .+|++.... ++.+...|...+....+.|+++.|.++|+++.+
T Consensus 333 e~aL~~-----~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 333 MQAAQH-----VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHH-----TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH-----cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777763 4557778888888888888888886 999998864 344666777788888889999999999998876
Q ss_pred cC---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHhhhc-ccccccccccCCchhhhhhhhh
Q 006303 427 AG---------CEPN------------SQCCNILLQACVEACQFDRAFRLFRSWTLS-KTQVALGEDYDGNTDRISNMEH 484 (651)
Q Consensus 427 ~~---------~~~~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 484 (651)
.. ..|+ ..+|...+....+.|..+.|..+|....+. ..
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-------------------- 466 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-------------------- 466 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG--------------------
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------------------
Confidence 41 0132 236777777777889999999999987654 11
Q ss_pred hccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCC
Q 006303 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563 (651)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 563 (651)
..+......+.+.-.+ ++.+.|..+|+...+. ..-+...|...++.....|+
T Consensus 467 --------------------------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 467 --------------------------VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp --------------------------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred --------------------------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence 1233444445555444 3589999999998876 33466677888888888899
Q ss_pred hHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 564 VEGALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (651)
Q Consensus 564 ~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 626 (651)
.+.|..+|++.......+ ....|..++.--.+.|+.+.+.++.+++.+. .|+......++.
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 999999999998854322 3467888888888899999999999999864 344444444443
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=1.6e-10 Score=114.93 Aligned_cols=303 Identities=7% Similarity=0.017 Sum_probs=199.8
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CC--cccHHHHHHHHHhhc----CChHHHH-----------HHHHHHHHCCCCCCHHh
Q 006303 266 CGICGDYMKSRAIYEDLRSQ--NV--TLNIYVFNSLMNVNA----HDLKFTL-----------EVYKNMQKLGVMADMAS 326 (651)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~ll~~~~----~~~~~a~-----------~~~~~m~~~~~~~~~~~ 326 (651)
+.+.+++++|..+++++.+. .+ .++...|-.++.... +..+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45689999999999998664 22 234445555555321 2333333 6666654421 11111
Q ss_pred H------HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC--C---
Q 006303 327 Y------NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--V--- 394 (651)
Q Consensus 327 ~------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~--- 394 (651)
+ ......+...|++++|.+.|++...........+ ...++..+...|...|++++|...+++..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1 2245567788999999999998876432211111 34567888888888999999988888876531 1
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhccccccc
Q 006303 395 -TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-EPN----SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468 (651)
Q Consensus 395 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 468 (651)
.....++..+...|...|++++|...|++..+... .++ ..++..+..+|...|++++|.+.+++...
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~------- 252 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA------- 252 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------
Confidence 11234677788888888888888888888765311 011 13667777788888888888888775432
Q ss_pred ccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CCc
Q 006303 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGL-SPN 547 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~-~p~ 547 (651)
+. ...+. ...
T Consensus 253 ------------------------------------------------------------------~~---~~~~~~~~~ 263 (383)
T 3ulq_A 253 ------------------------------------------------------------------VF---EESNILPSL 263 (383)
T ss_dssp ------------------------------------------------------------------HH---HHTTCGGGH
T ss_pred ------------------------------------------------------------------HH---HhhccchhH
Confidence 11 11122 224
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMRED----GMSPDVVAYTTAIKVCVRSKR---LKQAFSLFEEMKHYQIQPN-LV 619 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~ 619 (651)
..++..+...|.+.|++++|...+++..+. +-......+..+...|...|+ +++|+.++++. +..|+ ..
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHH
Confidence 567888999999999999999999988762 111122335667788888998 77777777766 33333 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 006303 620 TYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (651)
Q Consensus 620 ~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~ 649 (651)
.+..+...+...|++++|.+.++..-++.+
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 677888999999999999987776666543
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=3e-10 Score=99.77 Aligned_cols=168 Identities=16% Similarity=0.123 Sum_probs=115.9
Q ss_pred CCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
++..+|..+...|.+.|++++|++.|++..+..+ -+..++..+..+|.+.|++++|+..+........
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~----------- 70 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT----------- 70 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-----------
Confidence 3456788888888889999999999988887432 2577888888888888888888888887765421
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccC
Q 006303 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (651)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (651)
.+...+..+...+...++++.+.+.+.+.... .+.+...+..+...|.+.|+
T Consensus 71 -----------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-----~~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 71 -----------------------TSAEAYYILGSANFMIDEKQAAIDALQRAIAL-----NTVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTC
T ss_pred -----------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHhCC
Confidence 23445555556666667777777777666653 23345566666667777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 379 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
+++|+..|++..+.. +.+..+|..+..+|.+.|++++|.+.|++..+.
T Consensus 123 ~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 123 HDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 777777777666553 225566666777777777777777777766654
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.9e-09 Score=103.38 Aligned_cols=216 Identities=8% Similarity=-0.013 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc-------ccCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-------AKWW-------QMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
++|..+|+++... .+.+...|..++..+.. .|++ ++|..+|++.+..-.+-+...|..++.
T Consensus 33 ~~a~~~~~~al~~-----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 5777788877764 24466677777766653 4664 888888888887311235667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhh
Q 006303 407 ACANAGLVEQAMHLFEEMLQAGCEPN-SQ-CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484 (651)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (651)
.+.+.|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++.....
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------- 164 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--------------------- 164 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---------------------
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------------------
Confidence 888888888888888888875 332 33 78888888888888888888888876532
Q ss_pred hccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH---hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcC
Q 006303 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC---CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561 (651)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 561 (651)
+.+...|....... .++.++|..+|+...+.. +-+...|..++..+.+.
T Consensus 165 ---------------------------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~ 216 (308)
T 2ond_A 165 ---------------------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHL 216 (308)
T ss_dssp ---------------------------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTT
T ss_pred ---------------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 12223333332221 367888888888887752 23677889999999999
Q ss_pred CChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 562 GNVEGALQILKIMREDG-MSP--DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 562 g~~~~A~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
|++++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 217 g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999863 454 4678888899999999999999999998853
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=4.5e-10 Score=114.58 Aligned_cols=217 Identities=11% Similarity=-0.036 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT-VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
++.++..+++..... +.+...+..+...+...|++ ++|++.|++..+. .+.+...|..+..+|...|++++|.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----EPELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 455666666655432 34788888999999999999 9999999999874 2345788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANA---------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-------- 446 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 446 (651)
..|++..+. .|+...+..+...+... |++++|...|++..+.. +.+...|..+..+|...
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 999999986 46778899999999999 99999999999999875 45677888888888877
Q ss_pred CChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh
Q 006303 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526 (651)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 526 (651)
|++++|++.|++..... |.
T Consensus 235 g~~~~A~~~~~~al~~~-------------------------------------------------p~------------ 253 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-------------------------------------------------RK------------ 253 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-------------------------------------------------GG------------
T ss_pred chHHHHHHHHHHHHHhC-------------------------------------------------CC------------
Confidence 66666666665544311 00
Q ss_pred hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 527 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (651)
..-+...|..+...|...|++++|.+.|++..+.. +-+...+..+..++...|++++|++.+
T Consensus 254 -----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 254 -----------------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp -----------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00267788888999999999999999999988753 225667888888889999888888765
Q ss_pred HHH
Q 006303 607 EEM 609 (651)
Q Consensus 607 ~~m 609 (651)
+++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=7.6e-10 Score=97.14 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=62.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...|..+...|...|++++|++.|++..+. -+-+...+..+..+|.+.|++++|...+........ .+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHH
Confidence 3444555555555555555555555555542 122344455555555555555555555555544321 1344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
.+...+...++++.+...+.+..+.. +.+...+..+..+|.+.|++++|++.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 44444555555555555555544432 23344444444444455555555444443
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=8.7e-10 Score=109.19 Aligned_cols=291 Identities=13% Similarity=0.012 Sum_probs=170.7
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccccc
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~ 151 (651)
.....+...+...|++++|+..+++.+......+.. ....++..+...+...|++++|...+++..+.. +.....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 89 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCKGELTRSLALMQQTEQMA--RQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--HhcCcH
Confidence 344555666778899999999999998863221111 123455667778899999999999999988741 111101
Q ss_pred chhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHH
Q 006303 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (651)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (651)
......+......+...|++++|+..+++.+.......... .+....++..+...+
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------------------------~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------------------------LPMHEFLVRIRAQLL 145 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------------------------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc------------------------CcHHHHHHHHHHHHH
Confidence 11122233344456668999999999988765321000000 000012344566666
Q ss_pred hhcCCHHHHHHHHHHHHhcCCC--C--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HHHHHH-----HH--H
Q 006303 232 GKKRDLVSALRAYDASKKHLSS--P--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNS-----LM--N 299 (651)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~-----ll--~ 299 (651)
...|++++|...+++..+.... + ...++..+...+...|++++|...+++.......++ ...+.. .. .
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 6777777777777766543221 1 134566666777777777777777776654311111 011111 11 1
Q ss_pred hhcCChHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH-HHHHHHHHHHHc
Q 006303 300 VNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFAD 375 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 375 (651)
...|+++.|...+++.......+ ....+..+...+...|++++|...++............++. ..+..+..++..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 13367777777776665432111 12245667788888899999999988876643222112222 255566677777
Q ss_pred ccCHHHHHHHHHHHHH
Q 006303 376 AKWWQMALKVKEDMLS 391 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~ 391 (651)
.|+.++|...+++...
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 8888888887777664
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=1.4e-10 Score=111.49 Aligned_cols=240 Identities=10% Similarity=-0.001 Sum_probs=154.8
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhc-------CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCc
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVT 288 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~~ 288 (651)
.++..+...+...|++++|+..|+++.+. .......++..+...|...|++++|...+++.... +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66778899999999999999999988873 22234667889999999999999999999988754 212
Q ss_pred c-cHHHHHHHHHhh--cCChHHHHHHHHHHHHC------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-
Q 006303 289 L-NIYVFNSLMNVN--AHDLKFTLEVYKNMQKL------GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG- 357 (651)
Q Consensus 289 ~-~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~- 357 (651)
| ....+..+...+ .|++++|...+++..+. +..| ....+..+...+...|++++|.+.|+++.......
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2 233444444443 37888888888887664 2222 34567777888888888888888888888753221
Q ss_pred -C-ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 006303 358 -V-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-------GVTPNTI-------TWSSLINACANAGLVEQAMHLF 421 (651)
Q Consensus 358 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~ 421 (651)
. .+....++..+...|...|++++|...++++.+. ...+... .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 0 1223446777888888888888888888887752 1111111 1222222333344444555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 422 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
....... +....++..+..+|.+.|++++|.+.|++....
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5554432 334567888999999999999999999987653
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=2.7e-09 Score=102.31 Aligned_cols=182 Identities=15% Similarity=0.110 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-H-HHHHHHHHhh--cCChHHHHHHHH
Q 006303 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-I-YVFNSLMNVN--AHDLKFTLEVYK 313 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~-~~~~~ll~~~--~~~~~~a~~~~~ 313 (651)
++|+.+|++..+.-.+.+...|..++..+.+.|++++|..+|++..+.. |+ . ..|..+.... .|+++.|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777777777763111245567777777777777777777777776642 22 1 1333333322 134444444444
Q ss_pred HHHHCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 314 NMQKLGVMADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
+..+.. +.+...|........ ..|++++|..+|+...+. .+.+...|..++..+.+.|++++|..+|++....
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444432 122222322222211 145555555555555542 1223445555555555555555555555555553
Q ss_pred C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 393 G-VTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 393 ~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
. +.| ....|..++....+.|+.+.|..+++++.+.
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 222 2344555555555555555555555555544
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=2.2e-10 Score=110.20 Aligned_cols=247 Identities=13% Similarity=0.063 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSA-------GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA------GC 429 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~ 429 (651)
..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...++++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666666666666666666542 12223456667777777778888887777777654 21
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccc
Q 006303 430 -EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (651)
Q Consensus 430 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (651)
......+..+...|...|++++|.+.+++......... .
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-------------------~--------------------- 146 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL-------------------G--------------------- 146 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH-------------------C---------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc-------------------C---------------------
Confidence 22345678888899999999999999988765321000 0
Q ss_pred cccCC-CHHHHHHHHHHHh--hcHHHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHC-
Q 006303 509 FSFKP-TTTTYNILMKACC--TDYYRVKALMNEMRTV------GLSP-NHISWTILIDACGGSGNVEGALQILKIMRED- 577 (651)
Q Consensus 509 ~~~~~-~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 577 (651)
+-.| ....+..+...+. +++++|...++++.+. +..| ...++..+...|...|++++|..+++++.+.
T Consensus 147 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 147 -KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp -TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0012 2334555555544 4788888888877664 2223 3446777888888888888888888887752
Q ss_pred ------CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 578 ------GMSPDV-------VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644 (651)
Q Consensus 578 ------~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 644 (651)
...+.. ..+..+...+...+.+.++...++..... -..+..++..+..+|.+.|++++|.+.++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111111 11222223333344445555555555432 1334567888999999999999999987777
Q ss_pred HHHHhcC
Q 006303 645 QDMWKAG 651 (651)
Q Consensus 645 ~~m~~~g 651 (651)
-++..+|
T Consensus 305 l~l~~~~ 311 (311)
T 3nf1_A 305 MRSRKQG 311 (311)
T ss_dssp HHHHC--
T ss_pred HHHhhcC
Confidence 6665544
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=2.6e-09 Score=105.91 Aligned_cols=132 Identities=8% Similarity=-0.117 Sum_probs=95.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCC-ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC--C---C-CCHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--V---T-PNTITWS 402 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~---~-~~~~~~~ 402 (651)
....+...|++++|...|++......... ......++..+...|...|+++.|...+++..+.. . . ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556788999999999999887432211 11124567888889999999999999998877531 1 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQA----GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.+..+|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|.+.+++...
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999999999999887763 111 1124677788888899999999988877553
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=1.2e-09 Score=108.20 Aligned_cols=238 Identities=11% Similarity=0.070 Sum_probs=157.1
Q ss_pred cHHHHHHHH--hhcCCHHHHHHHHHHHHhcC--CC--CcHHhHHHHHHHH--HhcCCHHHHH---------HHHHHHHhC
Q 006303 223 LFCNFVREF--GKKRDLVSALRAYDASKKHL--SS--PNMYICRTIIDVC--GICGDYMKSR---------AIYEDLRSQ 285 (651)
Q Consensus 223 ~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~--~~~g~~~~a~---------~~~~~~~~~ 285 (651)
+-..|-+.| .+.+++++|.++++++.+.. .+ .+...|-.++..- ...+.++.+. +.++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 334445555 67888999998888876532 11 2333344443321 1112222222 555554332
Q ss_pred CCccc-HH-----HHHHHHHhhcCChHHHHHHHHHHHHCCC-CC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 006303 286 NVTLN-IY-----VFNSLMNVNAHDLKFTLEVYKNMQKLGV-MA----DMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (651)
Q Consensus 286 g~~~~-~~-----~~~~ll~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 354 (651)
....+ .. .+........|+++.|...|++...... .+ ...++..+...|...|+++.|...+++.....
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11111 11 1112222344899999999999875411 12 24578888999999999999999999988764
Q ss_pred hcCCc-c-ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 006303 355 AKGVL-K-LDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQ- 426 (651)
Q Consensus 355 ~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 426 (651)
..... . ....+++.+..+|...|++++|...|++..+. +.. ....++..+..+|...|++++|...|++..+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33211 1 12457888999999999999999999988753 111 1235688899999999999999999999887
Q ss_pred ----cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 427 ----AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 427 ----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.. +....++..+..+|.+.|++++|...+++...
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 33366788889999999999999999988664
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=9.9e-09 Score=101.55 Aligned_cols=207 Identities=11% Similarity=-0.055 Sum_probs=102.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHH
Q 006303 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMN 299 (651)
Q Consensus 225 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~ 299 (651)
..+...+...|++++|...+++........+. .+++.+...+...|++++|...+++....... .+..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------- 90 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH------- 90 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH-------
Confidence 34455666778888888888887764322222 24566667777788888888888776542100 0000
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcc--c-cHHHHHHHHHHHHcc
Q 006303 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK--L-DVFTYSTIVKVFADA 376 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~ 376 (651)
....++..+...+...|++++|...+++........... | ....+..+...+...
T Consensus 91 ----------------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 91 ----------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred ----------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence 001223344445555555555555555554432211111 2 233444455555555
Q ss_pred cCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHH----HHHHHHHhc
Q 006303 377 KWWQMALKVKEDMLSAGVT----PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP--NSQCCN----ILLQACVEA 446 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~ll~~~~~~ 446 (651)
|++++|...+++....... ....++..+...+...|++++|...+++.......+ ...... ..+..+...
T Consensus 149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC
Confidence 5555555555555432111 112344455555555566666666655554321111 111111 122234556
Q ss_pred CChhHHHHHHHHhh
Q 006303 447 CQFDRAFRLFRSWT 460 (651)
Q Consensus 447 g~~~~a~~~~~~~~ 460 (651)
|++++|...+++..
T Consensus 229 g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 229 GDKAAAANWLRHTA 242 (373)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhCC
Confidence 66666666665543
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=1.1e-09 Score=116.20 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=75.1
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
.+++.|...|.+.|++++|++.|++.++. .| +..+|+.+..+|.+.|++++|++.|++..+.... +...|..+-.+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 44555555555555555555555555542 23 3445555555555555555555555554443110 01111111111
Q ss_pred h--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccC
Q 006303 301 N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (651)
Q Consensus 301 ~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (651)
+ .|++++|++.|++..+.. +-+...|+.+..+|...|++++|++.|++..++ -+-+...+..+..+|...|+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL-----KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHhhhhhHHHhccc
Confidence 0 012222222222222211 123455666666666666666666666666553 12234455566666666666
Q ss_pred HHHHHHHHHHHHH
Q 006303 379 WQMALKVKEDMLS 391 (651)
Q Consensus 379 ~~~a~~~~~~m~~ 391 (651)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=3.6e-09 Score=112.29 Aligned_cols=166 Identities=12% Similarity=0.047 Sum_probs=126.3
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006303 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (651)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (651)
+..+|+.|...|.+.|++++|++.|++..+.. +-+..+|..+..+|
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----------------------------------P~~~~a~~nLg~~l 53 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF----------------------------------PEFAAAHSNLASVL 53 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------SCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHH
Confidence 46789999999999999999999999887652 12466777778888
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006303 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (651)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 414 (651)
.+.|++++|++.|++..++ -+-+...|..+..+|.+.|++++|++.|++.++... -+...|..+..+|.+.|++
T Consensus 54 ~~~g~~~eA~~~~~~Al~l-----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 54 QQQGKLQEALMHYKEAIRI-----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 8888888888888887764 133466777888888888888888888888776542 2567788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
++|+..|++..+.. +-+...+..+..+|...|++++|.+.+++..+
T Consensus 128 ~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 88888888877764 34566777788888888888888777776654
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.11 E-value=1.2e-08 Score=89.33 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=130.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006303 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (651)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (651)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 53 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD----------------------------------AFDVDVALHLGIAYV 53 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT----------------------------------SCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------------ccChHHHHHHHHHHH
Confidence 3456666777777788888877777665431 235667778888888
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 415 (651)
..|++++|.+.++.+.+. .+.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 54 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 54 KTGAVDRGTELLERSLAD-----APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHH
Confidence 889999999988888764 24466778888888888999999999998888764 346778888888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcc
Q 006303 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 416 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
+|..+++++.+.. +.+...+..+..+|...|++++|.+.+++.....
T Consensus 128 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 128 EAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999888775 4567788888888999999999999998876543
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.11 E-value=8.1e-09 Score=90.40 Aligned_cols=165 Identities=8% Similarity=-0.001 Sum_probs=118.8
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..+...+...|++++|+..++++.+... .+..++..+...+...|++++|...++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------- 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 4456677788888888888888888776422 356778888888888888888888888776541
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
+.+...+..+...+...|++++|.+.++.+... .+.+...+..+...+...|++++
T Consensus 73 -------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 73 -------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcHHH
Confidence 224556666777777777777777777777653 23456667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 129 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 129 AIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777653 335667777777777788888888777777654
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=4.2e-09 Score=99.48 Aligned_cols=222 Identities=12% Similarity=0.049 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCcc-cHHHHHHHHHhh--cCChHHHH
Q 006303 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVTL-NIYVFNSLMNVN--AHDLKFTL 309 (651)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~~~-~~~~~~~ll~~~--~~~~~~a~ 309 (651)
+|+++++++.....+....++..+...|...|++++|+..+++..+. +-.| ...++..+-..+ .|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 44444444443222234678899999999999999999999988754 1112 233344444433 36777887
Q ss_pred HHHHHHHHC-----CC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc--CC-ccccHHHHHHHHHHHHcccCH
Q 006303 310 EVYKNMQKL-----GV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GV-LKLDVFTYSTIVKVFADAKWW 379 (651)
Q Consensus 310 ~~~~~m~~~-----~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~ 379 (651)
..+.+.... +. +....++..+...+...|++++|.+.|+++...... +. .+....++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 777777653 11 112456667777777788888888888777764211 00 112344667777777788888
Q ss_pred HHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 380 QMALKVKEDMLSA-------GVTPN-TITWSSLINACANAGL------VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 380 ~~a~~~~~~m~~~-------~~~~~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
++|..+++++.+. ...+. ...+..+...+...+. +..+...++.... ..+....++..+..+|.+
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Confidence 8888877777642 11111 1223323222222222 2222222211110 112233467888899999
Q ss_pred cCChhHHHHHHHHhhh
Q 006303 446 ACQFDRAFRLFRSWTL 461 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~ 461 (651)
.|++++|...|++..+
T Consensus 265 ~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 265 QGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=3.2e-08 Score=90.13 Aligned_cols=191 Identities=10% Similarity=0.019 Sum_probs=106.5
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..+...+...|++++|+..|++..+....++...+..+..++...|++++|+..|++..+.... +...|..+-.++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 4566667777777777777777777777544355666666777777777777777777777655321 222222222222
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc---HHHHHHH
Q 006303 302 --AHDLKFTLEVYKNMQKLGVMADM-------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTI 369 (651)
Q Consensus 302 --~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l 369 (651)
.|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|+++.+ ..|+ ...|..+
T Consensus 87 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~~l 159 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD------VTSKKWKTDALYSL 159 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SSCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh------cCCCcccHHHHHHH
Confidence 245555555555554432 1233 3455666666667777777777776665 3343 3455555
Q ss_pred HHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
..+|...|+ .+++++...+ ..+...|.... ....+.+++|...|++..+..
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 555544432 2333333332 11233333322 223345677777777777653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=4.6e-09 Score=99.21 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=111.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc---CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC------C
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK---GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA------G 393 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 393 (651)
...++..+...|...|++++|...++++...... +..+....++..+...|...|++++|...++++... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4678888999999999999999999998875311 111334567899999999999999999999998764 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 394 -VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA------GCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 394 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.+....++..+...+...|++++|..+++++.+. +..| ...++..+..+|...|++++|...+++....
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1224567888999999999999999999998875 1122 3457888889999999999999999987653
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.02 E-value=6.8e-08 Score=87.90 Aligned_cols=198 Identities=11% Similarity=0.011 Sum_probs=116.8
Q ss_pred ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006303 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (651)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34556666666677777777777777776665433566666667777777777777777777777653 23445666677
Q ss_pred HHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCC-H----
Q 006303 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-T---- 515 (651)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 515 (651)
.+|...|++++|...+++.... .|+ .
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~-------------------------------------------------~p~~~~~~~ 114 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA-------------------------------------------------VPGNATIEK 114 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------------------------------------------------STTCHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH-------------------------------------------------CCCcHHHHH
Confidence 7777777777777777766543 222 2
Q ss_pred ---HHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 516 ---TTYNILMKACC--TDYYRVKALMNEMRTVGLSPN---HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (651)
Q Consensus 516 ---~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 587 (651)
..|..+-..+. +++++|...|+++.+. .|+ ...|..+...|... +..+++++...+ ..+...|.
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~ 186 (228)
T 4i17_A 115 LYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYA 186 (228)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHH
T ss_pred HHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHH
Confidence 11222222222 4677788887777763 454 44566666666433 334445554432 22344443
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 620 (651)
... ....+.+++|...+++..+. .|+...
T Consensus 187 ~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 187 SEK--AKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 333 23345678899998888864 455443
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=2e-08 Score=95.24 Aligned_cols=215 Identities=11% Similarity=0.020 Sum_probs=131.6
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhc---CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
....|...+..+...|++++|+..|++.+... .+|.. ...++..++..|...|++++|+..|++..+. .+
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~ 108 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDE-----AGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FT 108 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HH
Confidence 45678888899999999999999999988762 12221 2556788899999999999999999999874 22
Q ss_pred cccccchhhHHHHHHHHHHhhc-chHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHH
Q 006303 147 LELFDGSGFKLLKNECQRLLDS-GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (651)
...........+.+....+... |++++|+..|++.+... |.. ++... ...++.
T Consensus 109 ~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~--------------~~~~~----------~~~~~~ 162 (292)
T 1qqe_A 109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQD--------------QSVAL----------SNKCFI 162 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHT--------------TCHHH----------HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhC--------------CChHH----------HHHHHH
Confidence 1111111223344444455554 88888888888776532 110 00000 013456
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccH---HHHH
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNI---YVFN 295 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~---~~~~ 295 (651)
.+...|.+.|++++|+..|++..+....... ..|..+..++...|++++|+..|++..+.... ++. ..+.
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 6777777778888888887777764332211 14566667777778888888887777654211 111 1223
Q ss_pred HHHHhhc----CChHHHHHHHHHHHH
Q 006303 296 SLMNVNA----HDLKFTLEVYKNMQK 317 (651)
Q Consensus 296 ~ll~~~~----~~~~~a~~~~~~m~~ 317 (651)
.+...+. +++++|+..|+.+..
T Consensus 243 ~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 243 SLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 3333332 356666666655543
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=4.7e-07 Score=83.94 Aligned_cols=210 Identities=11% Similarity=0.013 Sum_probs=142.2
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHH
Q 006303 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT 308 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a 308 (651)
+-..-.|.+..++.-...+. .........-+.++|...|+++.. ....|....+..+.....++ +
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~~~---a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLDTK---N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHTTT---C
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhccc---H
Confidence 34445688888887333221 111223333445777778877531 12234433444443333332 6
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHH
Q 006303 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (651)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 388 (651)
+..|+++...+ .++..++..+..++...|++++|++++.+... .+...-+...+..++..+.+.|+.+.|.+.++.
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77788777655 45666667888999999999999999998754 110013667888899999999999999999999
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 389 MLSAGVTP-----NTITWSSLINACA--NAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 389 m~~~~~~~-----~~~~~~~ll~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
|.+. .| +..+...+..++. ..| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9875 55 3566666666633 334 899999999998765 455444455555899999999999999876
Q ss_pred hh
Q 006303 460 TL 461 (651)
Q Consensus 460 ~~ 461 (651)
.+
T Consensus 238 ~~ 239 (310)
T 3mv2_B 238 LS 239 (310)
T ss_dssp HS
T ss_pred HH
Confidence 54
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=1e-07 Score=86.42 Aligned_cols=195 Identities=7% Similarity=-0.048 Sum_probs=131.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+-.++..+...|++++|+..|++++.. .|.... ...++..++..+...|++++|+..|+++.+. .|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPY---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 455667788889999999999999999987 443211 2456677888899999999999999999984 444321
Q ss_pred cchhhHHHHHHH---------------HHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhh
Q 006303 151 DGSGFKLLKNEC---------------QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (651)
Q Consensus 151 ~~~~~~~l~~~~---------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (651)
....+-.+..+. ..+.+.|++++|+..|++++... |++...+......-.-.+..
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~-------- 146 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH--------
Confidence 111111111110 01123688999999999998755 55554443222111000000
Q ss_pred hCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
......+...|.+.|++++|+..|+++.+...... ..++..+..+|.+.|++++|++.++.+...+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01224567888999999999999999988543211 35788899999999999999999998887643
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.92 E-value=2.2e-08 Score=93.30 Aligned_cols=191 Identities=6% Similarity=-0.040 Sum_probs=132.5
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+-.++..+...|++++|+..|+.++.. .|+.. ....++..++..+...|++++|+..|++..+. .|+...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~ 87 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHE---WAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPR 87 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCc---chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCch
Confidence 677778888999999999999999999988 44421 02456677888899999999999999999985 343221
Q ss_pred cchhhHHHHHHHHHHhh--------cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCc
Q 006303 151 DGSGFKLLKNECQRLLD--------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 222 (651)
....+......+.. .|++++|+..|++++... |++......+.......+.. ..
T Consensus 88 ---~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~-------------~~ 149 (261)
T 3qky_A 88 ---VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL-------------AR 149 (261)
T ss_dssp ---HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH-------------HH
T ss_pred ---hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH-------------HH
Confidence 22233344445555 899999999999998855 55444333221111100000 12
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCC
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGIC----------GDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~g 286 (651)
.+..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|+..|+.+.+..
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 24567788888889999998888888754321 245677777777765 78888888888887763
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=1.2e-07 Score=77.61 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
.+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++...+ +.+...+..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence 4667778888888999999988888763 23456777888888888889999999988887764 33667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
..+...|++++|..+++++.+.. +.+...+..+..++.+.|++++|...++++...
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888899999999998888764 445677888888888899999998888877653
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.88 E-value=1.3e-07 Score=89.59 Aligned_cols=213 Identities=10% Similarity=-0.027 Sum_probs=148.9
Q ss_pred hHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYED 281 (651)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 281 (651)
+++|...+.. .+..|...|++++|+..|++..+. |..+ ...+|+.+..+|.+.|++++|+..|++
T Consensus 33 ~~~A~~~~~~----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 102 (292)
T 1qqe_A 33 FEEAADLCVQ----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102 (292)
T ss_dssp HHHHHHHHHH----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666655443 356778889999999988877653 2112 256888899999999999999999887
Q ss_pred HHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhcCCc
Q 006303 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLA-GNTVLAQEIYGEVKHLEAKGVL 359 (651)
Q Consensus 282 ~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~ 359 (651)
..+. +. ..|-.. -..+++.+...|... |++++|+..|++..++......
T Consensus 103 Al~l--------------------------~~---~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 103 AIQI--------------------------FT---HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHH--------------------------HH---HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH--------------------------HH---HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 6542 11 111000 134677888899996 9999999999999885432111
Q ss_pred ccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 360 KLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 360 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
... ..+++.+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|...|++..+.. |+
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~ 231 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PN 231 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC
Confidence 111 356888999999999999999999999986433222 157778889999999999999999987642 32
Q ss_pred H------HHHHHHHHHHH--hcCChhHHHHHHHHhh
Q 006303 433 S------QCCNILLQACV--EACQFDRAFRLFRSWT 460 (651)
Q Consensus 433 ~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~ 460 (651)
. ..+..++.+|. ..+++++|+..|+++.
T Consensus 232 ~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 232 FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 1 13444556664 3456888888886654
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=1.9e-08 Score=87.32 Aligned_cols=166 Identities=11% Similarity=0.013 Sum_probs=117.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|+++++. .|+ ...++..++..+...|++++|+..|+++.+. .|+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~- 74 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--LQS------RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS- 74 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-
Confidence 455677788889999999999999998887 666 3555667788899999999999999998764 33211
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
..... . ...+...+...+|+..+++.+... |.+..++..+...
T Consensus 75 ---~~~~~-~-~~~~~~~~~~~~a~~~~~~al~~~--------------------------------P~~~~~~~~la~~ 117 (176)
T 2r5s_A 75 ---YKSLI-A-KLELHQQAAESPELKRLEQELAAN--------------------------------PDNFELACELAVQ 117 (176)
T ss_dssp ---HHHHH-H-HHHHHHHHTSCHHHHHHHHHHHHS--------------------------------TTCHHHHHHHHHH
T ss_pred ---HHHHH-H-HHHHHhhcccchHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHH
Confidence 11111 1 011111122234566666665533 3445677778888
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
+...|++++|+..|+++.+....+ +...+..+..++...|+.++|...|++...
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888999999999999888854432 356788888889999999999988887653
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=1.3e-07 Score=84.56 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=69.5
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHh----------------HHHHhhhhcChhHHHH
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS----------------GIVKSIREGRIDCVVG 134 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------~~~~~~~~g~~~~a~~ 134 (651)
...+...+..+...|++++|+..|+++++. .|+.. .++.. ++..+...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRT------EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHH------HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCh------HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 445566677788899999999999999998 77743 23333 5556666677777777
Q ss_pred HHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHH
Q 006303 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (651)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (651)
.|++.++. .|+.. ..+......+...|++++|+..|++++... |++...+..++..+
T Consensus 76 ~~~~al~~--~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 76 FYKELLQK--APNNV------DCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHH--CTTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 76666663 33221 222233334444666666666666666643 54544444444444
No 95
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.5e-07 Score=86.05 Aligned_cols=192 Identities=9% Similarity=-0.087 Sum_probs=136.9
Q ss_pred ccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhH-------HHHhhhhcChhHHHHHHHHHHHcCCCccccccchh-
Q 006303 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASG-------IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG- 154 (651)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~- 154 (651)
..++...|++.|.++.+. +|+. .++...+ ...+.+.++..+++..+.+-.+ +.|+.......
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~------~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~ 87 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESA------CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAI 87 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEEC
T ss_pred cCCCHHHHHHHHHHHHHh--Chhh------hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhcc
Confidence 579999999999999998 7763 3333333 4556666777777777776665 55544322222
Q ss_pred --------------hHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCC
Q 006303 155 --------------FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (651)
Q Consensus 155 --------------~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 220 (651)
-.+.+..+..+...|++++|.++|+.+...+ |.+. ....++..+.+.+++++|+..|......
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 1122333345556899999999999887644 5555 6677777888999999999998765332
Q ss_pred ------CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 221 ------DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 221 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
..++..+..++.+.|++++|++.|++.......| ..........++.+.|+.++|..+|+++....+
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2367778889999999999999999887543324 344667777788889999999999999888743
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=8.5e-07 Score=82.26 Aligned_cols=167 Identities=8% Similarity=-0.002 Sum_probs=88.3
Q ss_pred CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-----cHHH
Q 006303 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-----NIYV 293 (651)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-----~~~~ 293 (651)
+..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 3344556677777777788887777777654431 24556667777777777777777777777655 33 1223
Q ss_pred HHHHHHh----hcC--ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc--CC---cccc
Q 006303 294 FNSLMNV----NAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GV---LKLD 362 (651)
Q Consensus 294 ~~~ll~~----~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~---~~~~ 362 (651)
...+..+ ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+.... .. -+.+
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 2222222 112 566666666665443 233223333334555666666666666554432100 00 0223
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
..+...+|......|+ +|.+++.++.+.
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3344334433334444 555555555554
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.82 E-value=2.9e-07 Score=85.63 Aligned_cols=172 Identities=11% Similarity=-0.021 Sum_probs=115.8
Q ss_pred CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 006303 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (651)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (651)
+...+..+...+.+.|++++|+..|+++.+.... + ..++..+..+|.+.|++++|+..|+...+.....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------- 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------- 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-------
Confidence 3466777888888999999999999998875422 2 5678888888999999999999999887753210
Q ss_pred HHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--------cCCHHHHHHHHHHHHHhhhcCCccccHHH---
Q 006303 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL--------AGNTVLAQEIYGEVKHLEAKGVLKLDVFT--- 365 (651)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 365 (651)
+.....+..+..++.. .|++++|...|+++.... +.+...
T Consensus 86 ------------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a 136 (261)
T 3qky_A 86 ------------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDA 136 (261)
T ss_dssp ------------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHH
T ss_pred ------------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHH
Confidence 0012233334444444 555666666665555421 111111
Q ss_pred --------------HHHHHHHHHcccCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHH
Q 006303 366 --------------YSTIVKVFADAKWWQMALKVKEDMLSAGVTP--NTITWSSLINACANA----------GLVEQAMH 419 (651)
Q Consensus 366 --------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~----------g~~~~a~~ 419 (651)
+..+...|.+.|++++|+..|+++++..... ....+..+..+|... |++++|..
T Consensus 137 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 2456778888899999999998888753211 234677777777765 88899999
Q ss_pred HHHHHHHcC
Q 006303 420 LFEEMLQAG 428 (651)
Q Consensus 420 ~~~~~~~~~ 428 (651)
.|+++.+..
T Consensus 217 ~~~~~~~~~ 225 (261)
T 3qky_A 217 LYERLLQIF 225 (261)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 999888764
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=8.7e-08 Score=90.47 Aligned_cols=165 Identities=10% Similarity=-0.041 Sum_probs=105.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|+++++. .|+ ...++..++..+...|++++|+..++++.+. .|+..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~- 185 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQ------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTR- 185 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTS------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHH-
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCc------chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchH-
Confidence 445556666666667777777777666666 554 2334455556666667777776666666553 23211
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
...+.....+...++.++|+..+++.+... |.+..++..+...
T Consensus 186 -----~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------------------------------P~~~~~~~~la~~ 228 (287)
T 3qou_A 186 -----YQGLVAQIELLXQAADTPEIQQLQQQVAEN--------------------------------PEDAALATQLALQ 228 (287)
T ss_dssp -----HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhcccCccHHHHHHHHhcC--------------------------------CccHHHHHHHHHH
Confidence 111222222333455555666665555433 4555777788888
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 283 (651)
|...|++++|+..|.++.+..... +...+..++..+...|+.++|...|++..
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 888999999999999888854322 26678888999999999988888887654
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.79 E-value=3.8e-07 Score=74.62 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=67.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 303 (651)
+..++..+...|++++|+.+++++.+... .+...+..+...+...|++++|...++++...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----------------
Confidence 44555566666666666666666555322 234455555555555666666666555554321
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
+.+...+..+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|.
T Consensus 66 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 66 -----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp -----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred -----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHccHHHHH
Confidence 123344445555555556666666666555542 1223444555555555555555555
Q ss_pred HHHHHHHH
Q 006303 384 KVKEDMLS 391 (651)
Q Consensus 384 ~~~~~m~~ 391 (651)
..++++..
T Consensus 124 ~~~~~~~~ 131 (136)
T 2fo7_A 124 EYYQKALE 131 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55555543
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=2.5e-06 Score=80.01 Aligned_cols=180 Identities=9% Similarity=-0.029 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhhcc-hHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCC--ChHHHHHHhhhC----CCCCccHHHH
Q 006303 155 FKLLKNECQRLLDSG-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP--DVNLAIRYACIV----PRADILFCNF 227 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~----~~~~~~~~~l 227 (651)
+..+...+....+.| ..++|+..++.++..+ |...++|..-...+...+ ++++++++++.+ |.+..+|+.-
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R 109 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 333333333333334 3468999999988855 778788887777777777 777777665543 5666666654
Q ss_pred HHHH----hhc---CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 228 VREF----GKK---RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 228 ~~~~----~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
...+ ... +++++++.+++.+.+... .+..+|+.-.-++.+.|.++ ++++.++.+.+..+. |...|+...
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4443 333 567777777777776432 36666766666666666666 666666666655332 333443322
Q ss_pred Hhhc--CC------hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 006303 299 NVNA--HD------LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (651)
Q Consensus 299 ~~~~--~~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 339 (651)
.... +. ++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 2211 11 344444444444432 2244444444444444444
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=4.3e-07 Score=81.04 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=60.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH-HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
...+......+...|++++|+..|++.... .|+. ..|... .... ..........
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~-----~~~~--------------~~~~~~~~~~ 58 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL------NIDRTEMYYWT-----NVDK--------------NSEISSKLAT 58 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHHHHHHH-----HSCT--------------TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHh-----hhcc--------------hhhhhHHHHH
Confidence 334444555666777777777777777662 3332 223220 0000 0000111122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.+..++.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...|++...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666666666777776666666654 33555666666666666777766666666554
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.75 E-value=5.6e-08 Score=103.83 Aligned_cols=168 Identities=12% Similarity=0.006 Sum_probs=111.5
Q ss_pred hccCChHHHHHHHHHHH--------HhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccch
Q 006303 82 AKDGRLEEFAMIVESVV--------VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~ 153 (651)
...|++++|++.|++++ +. .|+. ..++..++..+...|++++|+..|+++.+. .|+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~---- 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSES------VELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRW---- 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCH----
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccc------hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchH----
Confidence 67899999999999998 44 5652 445566778899999999999999999984 44332
Q ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHH
Q 006303 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVR 229 (651)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 229 (651)
..+......+...|++++|++.|++.++.. |.+...+..++.++.+.|++++ .+.|+++ |.+..++..+..
T Consensus 468 --~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 468 --RLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 223333334556899999999999998855 6666666666666666666666 5555442 445566666666
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcC
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICG 270 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 270 (651)
+|.+.|++++|++.|++..+ ..|+ ..++..+..++...+
T Consensus 543 ~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC---
T ss_pred HHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccC
Confidence 66666666666666666655 2332 445555555554433
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1.4e-07 Score=100.64 Aligned_cols=173 Identities=13% Similarity=-0.025 Sum_probs=118.7
Q ss_pred hhcCCHHHHHHHHHHHH--------hcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC
Q 006303 232 GKKRDLVSALRAYDASK--------KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (651)
Q Consensus 232 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 303 (651)
...|++++|++.+++.. +. .+.+...+..+...+...|++++|++.|++..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV----------------- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------------
Confidence 67788999999888887 32 12356678888888888888888888888877642
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
+.+...|..+..++...|++++|.+.|+++.++ .+.+...|..+..+|.+.|++++ +
T Consensus 464 -----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~lg~~~~~~g~~~~-~ 520 (681)
T 2pzi_A 464 -----------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-----FPGELAPKLALAATAELAGNTDE-H 520 (681)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCSHHHHHHHHHHHHHTCCCT-T
T ss_pred -----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCChHH-H
Confidence 235566777777777777777777777777763 13345667777777777777777 7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQ 448 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~ 448 (651)
..|++..+... -+...|..+..++.+.|++++|...|+++.+. .|+ ...+..+..++...++
T Consensus 521 ~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 521 KFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 77777776542 25667777777777778888887777777654 333 3455555556544333
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=1.3e-07 Score=81.83 Aligned_cols=158 Identities=8% Similarity=-0.040 Sum_probs=83.6
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh-
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~- 300 (651)
..+..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|+..|+....... +...+......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 4455667777888888888888887765321 2566788888888888888888888887765422 22211111000
Q ss_pred h-c-CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc---HHHHHHHHHHHHc
Q 006303 301 N-A-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFAD 375 (651)
Q Consensus 301 ~-~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 375 (651)
. . +....+...+++..+.. +.+...+..+...+...|++++|...|+++.+ ..|+ ...+..+...+..
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHHHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHHHHHHHH
Confidence 0 0 11122344444443322 12344444555555555555555555555443 1222 2344444555555
Q ss_pred ccCHHHHHHHHHHH
Q 006303 376 AKWWQMALKVKEDM 389 (651)
Q Consensus 376 ~~~~~~a~~~~~~m 389 (651)
.|+.++|...|++.
T Consensus 157 ~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 157 LGQGNAIASKYRRQ 170 (176)
T ss_dssp HCSSCHHHHHHHHH
T ss_pred hCCCCcHHHHHHHH
Confidence 55555555554443
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.71 E-value=6e-05 Score=76.63 Aligned_cols=203 Identities=9% Similarity=-0.045 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006303 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420 (651)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 420 (651)
+.+..+|+++... .+.+...|...+.-+.+.|+.+.|..++++.... +.+...|.. |....+.++.
T Consensus 196 ~Rv~~~ye~al~~-----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~--- 261 (493)
T 2uy1_A 196 SRMHFIHNYILDS-----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV--- 261 (493)
T ss_dssp HHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---
T ss_pred HHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---
Confidence 3456677777653 3455677887888888888888888888888876 223222221 2221111111
Q ss_pred HHHHHHcC---------C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccc
Q 006303 421 FEEMLQAG---------C---EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (651)
Q Consensus 421 ~~~~~~~~---------~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (651)
++.+.+.- . ......|...+....+.+..+.|..+|+.. ....
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~------------------------ 316 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG------------------------ 316 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC------------------------
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC------------------------
Confidence 22222210 0 011235666666666778889999999876 2100
Q ss_pred cccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh-cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHH
Q 006303 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567 (651)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 567 (651)
.........+.+....+ +.+.|..+|+...+.- .-+...+...++...+.|+.+.|
T Consensus 317 ----------------------~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 317 ----------------------VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred ----------------------CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 01122222233443343 6889999999888753 22345566677777788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 568 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
..+|+++. .....|...+.--...|+.+.+.++++++.
T Consensus 374 R~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 374 RALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999873 257778888877777899999988888876
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=4.8e-07 Score=86.44 Aligned_cols=60 Identities=8% Similarity=0.011 Sum_probs=32.8
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC---C--cHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS---P--NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 283 (651)
++..+...|.. |++++|+..|++..+.... + ...+++.+...|.+.|++++|+..|++..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555666666 6666666666655542100 0 13345555666666666666666665554
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=1.4e-06 Score=78.80 Aligned_cols=204 Identities=10% Similarity=0.009 Sum_probs=112.8
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHH--HHHHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY--VFNSL 297 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~l 297 (651)
..+..++..+.+.|++++|+..|+++.+.... | ...++..+..+|.+.|++++|+..|+++.+........ .+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 45566777888899999999999998875432 1 13577888889999999999999999988764321111 11111
Q ss_pred HHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH-HHHHHHHHHHHcc
Q 006303 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADA 376 (651)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 376 (651)
-.++.. +.. .....|..+...+...|++++|...|+.+.+. .|+. ..+.......
T Consensus 85 g~~~~~-----------~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~P~~~~a~~a~~~l~--- 140 (225)
T 2yhc_A 85 GLTNMA-----------LDD----SALQGFFGVDRSDRDPQQARAAFSDFSKLVRG------YPNSQYTTDATKRLV--- 140 (225)
T ss_dssp HHHHHH-----------HHC------------------CCHHHHHHHHHHHHHHTT------CTTCTTHHHHHHHHH---
T ss_pred HHHHHh-----------hhh----hhhhhhhccchhhcCcHHHHHHHHHHHHHHHH------CcCChhHHHHHHHHH---
Confidence 111100 000 00011222333444567788888888888763 2332 2222111100
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 006303 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN--SQCCNILLQACVEACQFDRAFR 454 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~ 454 (651)
.+...+ ......+...+.+.|++++|...|+++.+...... ...+..+..+|.+.|++++|.+
T Consensus 141 -------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 141 -------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp -------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 000000 01122455667777778888888877776631111 2356667777777788888877
Q ss_pred HHHHhhhccc
Q 006303 455 LFRSWTLSKT 464 (651)
Q Consensus 455 ~~~~~~~~~~ 464 (651)
.++.+....+
T Consensus 206 ~~~~l~~~~~ 215 (225)
T 2yhc_A 206 VAKIIAANSS 215 (225)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhhCC
Confidence 7776665543
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=6.2e-07 Score=84.58 Aligned_cols=163 Identities=12% Similarity=0.009 Sum_probs=104.7
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
|.+...+..+...+.+.|++++|+..|++..+... -+...+..+...+...|++++|...++.+.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 34445666778888888999999999998887432 256788888888999999999999998876652 333222211
Q ss_pred HHh---hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc---HHHHHHHHH
Q 006303 298 MNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVK 371 (651)
Q Consensus 298 l~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 371 (651)
... ..++.+.|...+++..... +.+...+..+...+...|++++|...|+++.+. .|+ ...+..++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX------DLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccccchHHHHHHH
Confidence 111 1134555566666655543 335566666666777777777777777666652 222 445666666
Q ss_pred HHHcccCHHHHHHHHHHHH
Q 006303 372 VFADAKWWQMALKVKEDML 390 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~ 390 (651)
.|...|+.++|...|++..
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 6666666666666665543
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.65 E-value=2.2e-07 Score=77.88 Aligned_cols=53 Identities=8% Similarity=-0.058 Sum_probs=23.9
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
.+...|++++|+..++..... .| +...+..+...|.+.|++++|++.|++..+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 59 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN 59 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555544431 12 223344444555555555555555554443
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.63 E-value=4.4e-06 Score=74.62 Aligned_cols=175 Identities=15% Similarity=0.010 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHH
Q 006303 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG----LVEQAM 418 (651)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~ 418 (651)
|.+.|++..+ .-+...+..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.
T Consensus 5 A~~~~~~aa~-------~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 5 PGSQYQQQAE-------AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp TTHHHHHHHH-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred HHHHHHHHHH-------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 4455555543 1355566666666666666666666666666654 44555555555555 4 666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCC
Q 006303 419 HLFEEMLQAGCEPNSQCCNILLQACVE----ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494 (651)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (651)
++|++..+.+ +...+..|...|.. .+++++|++.|+
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~------------------------------------- 113 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQ------------------------------------- 113 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHH-------------------------------------
Confidence 6666665543 34444455555443 444455554444
Q ss_pred CccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhc----CCChHHHHH
Q 006303 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS-PNHISWTILIDACGG----SGNVEGALQ 569 (651)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~ 569 (651)
+..+.|.. .+...+..|...|.. .+++++|..
T Consensus 114 -------------------------------------------~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 114 -------------------------------------------DAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp -------------------------------------------HHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred -------------------------------------------HHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44433211 014555566666665 667788888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 006303 570 ILKIMREDGMSPDVVAYTTAIKVCVRS-K-----RLKQAFSLFEEMKHYQ 613 (651)
Q Consensus 570 ~~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 613 (651)
+|++..+. ..+...+..|...|... | +.++|.++|++..+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88887764 23444566666666543 2 7788888887777665
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=1.3e-06 Score=91.60 Aligned_cols=152 Identities=8% Similarity=-0.090 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 006303 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (651)
Q Consensus 269 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (651)
.|++++|++.|++..+.... +...+..+-..+ .|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36778888888877665321 334444444433 377888888888877653 23566777777888888888888888
Q ss_pred HHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHH
Q 006303 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA---GLVEQAMHLFEE 423 (651)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~ 423 (651)
|++..+. .+.+...+..+..+|.+.|++++|.+.|++..+... .+...+..+..++... |+.++|.+.+++
T Consensus 80 ~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 80 LQQASDA-----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8877764 233566777778888888888888888888776542 3566777777777777 888888888888
Q ss_pred HHHcC
Q 006303 424 MLQAG 428 (651)
Q Consensus 424 ~~~~~ 428 (651)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 77765
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=5.5e-06 Score=73.98 Aligned_cols=141 Identities=14% Similarity=0.056 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc----CHHHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK----WWQMA 382 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a 382 (651)
+|++.|++..+.| ++..+..|...|...+++++|.+.|++..+. -+...+..|...|.. + ++++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------GDGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TCHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 4667777777754 7788888888998999999999999998762 366778888888887 6 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCChhHHH
Q 006303 383 LKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCE-PNSQCCNILLQACVE----ACQFDRAF 453 (651)
Q Consensus 383 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~a~ 453 (651)
+..|++..+.| +...+..|...|.. .+++++|+.+|++..+.+.. ..+..+..|...|.. .+++++|+
T Consensus 73 ~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 73 RQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998765 66778888888877 78999999999999877521 125677777777777 66777777
Q ss_pred HHHHHhhh
Q 006303 454 RLFRSWTL 461 (651)
Q Consensus 454 ~~~~~~~~ 461 (651)
..|++...
T Consensus 150 ~~~~~A~~ 157 (212)
T 3rjv_A 150 EYFKGSSS 157 (212)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.59 E-value=5.1e-07 Score=75.63 Aligned_cols=119 Identities=7% Similarity=-0.097 Sum_probs=89.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...|.+.|++++|++.|++..++ -+-+..+|..+..+|...|++++|+..|++..+... -+...|.
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 103 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVL 103 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHH
Confidence 3455667888888999999999999988874 244677888888899999999999999988887643 2677888
Q ss_pred HHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006303 403 SLINACANAGLVEQAMHL-FEEMLQAGCEPNSQCCNILLQACVEACQ 448 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 448 (651)
.+...|.+.|+.+++.+. +++..+.. +-++.+|......+...|+
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888888766554 57777764 4466677766666665553
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.59 E-value=8.2e-07 Score=84.80 Aligned_cols=183 Identities=13% Similarity=0.046 Sum_probs=111.6
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
....|...+..|...|++++|+..|++.+... +..-.......++..++..|...|++++|+..|++..+.-.....
T Consensus 35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~- 111 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH--ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT- 111 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 46678888889999999999999999988762 111001113556778888899999999999999998774111100
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (651)
.......+.+....+.. |++++|+..|++.+... +.. ++... ...++..+..
T Consensus 112 -~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~--------------~~~~~----------~~~~~~~lg~ 163 (307)
T 2ifu_A 112 -PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENE--------------ERLRQ----------AAELIGKASR 163 (307)
T ss_dssp -HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHT--------------TCHHH----------HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhC--------------CChhH----------HHHHHHHHHH
Confidence 11123344555556666 88899988888876532 110 00000 0134555666
Q ss_pred HHhhcCCHHHHHHHHHHHHhcC----CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 230 EFGKKRDLVSALRAYDASKKHL----SSPN-MYICRTIIDVCGICGDYMKSRAIYEDLR 283 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 283 (651)
.|.+.|++++|+..|++..+.. ..+. ...+..+..++...|++++|...|++..
T Consensus 164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666666666666666655421 1011 1245555555666667777776666665
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.57 E-value=8.5e-05 Score=69.62 Aligned_cols=217 Identities=9% Similarity=-0.004 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc-
Q 006303 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK--WWQMALKVKEDMLSAGVTPNTITWSSLINAC----ANA- 411 (651)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~- 411 (651)
..++|+++++.+..+ -+-+...|+.--.++...| +++++++.++.++....+ +..+|+.-...+ ...
T Consensus 48 ~s~~aL~~t~~~L~~-----nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 48 YSERALHITELGINE-----LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CSHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHH-----CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 345788888877764 1334455777777777777 888888888888776433 455555544444 444
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHhhhcccccccccccCCchhhhhhhhhhcc
Q 006303 412 --GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD--RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (651)
Q Consensus 412 --g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (651)
+++++++.+++++.+.. +-+...|+.-..++.+.|.++ ++++.++++.+.+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d------------------------ 176 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD------------------------ 176 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC------------------------
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC------------------------
Confidence 67888888888888765 556677777777777778777 8888888877653
Q ss_pred ccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hc------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 006303 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TD------YYRVKALMNEMRTVGLSPNHISWTILIDACG 559 (651)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 559 (651)
..|...|+.-...+. +. ++++.+.++.++...+ -|...|+-+...+.
T Consensus 177 ------------------------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~ 231 (306)
T 3dra_A 177 ------------------------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHE 231 (306)
T ss_dssp ------------------------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHH
Confidence 234444443333222 12 6778888888887643 37788888888888
Q ss_pred cCCChH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 560 GSGNVE-GALQILKIMREDG--MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 560 ~~g~~~-~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
+.|+.. .+..+.+++.+.+ -..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 232 RFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888744 4555666665432 134778888999999999999999999999975
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.57 E-value=1.8e-06 Score=90.51 Aligned_cols=149 Identities=9% Similarity=-0.038 Sum_probs=95.7
Q ss_pred CChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006303 205 PDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (651)
Q Consensus 205 ~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 280 (651)
|++++|...+++. |.+..++..+...|.+.|++++|++.|++..+... .+..++..+...|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4555555555443 33345555566666666666666666666555321 234555555555666666666666555
Q ss_pred HHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcc
Q 006303 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360 (651)
Q Consensus 281 ~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 360 (651)
+..+. . +.+...+..+..++...|++++|.+.|++..+. .+
T Consensus 82 ~al~~---------------------------------~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p 122 (568)
T 2vsy_A 82 QASDA---------------------------------A-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-----LP 122 (568)
T ss_dssp HHHHH---------------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred HHHhc---------------------------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC
Confidence 55433 2 336789999999999999999999999999874 23
Q ss_pred ccHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHCC
Q 006303 361 LDVFTYSTIVKVFADA---KWWQMALKVKEDMLSAG 393 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~ 393 (651)
.+...+..+...+... |++++|.+.+++..+.+
T Consensus 123 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 4577889999999999 99999999999998865
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.54 E-value=0.0012 Score=67.01 Aligned_cols=348 Identities=9% Similarity=-0.029 Sum_probs=199.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CCc-ccHHHHHHHHHhhc------CCh
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD-YMKSRAIYEDLRSQ-NVT-LNIYVFNSLMNVNA------HDL 305 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-g~~-~~~~~~~~ll~~~~------~~~ 305 (651)
|+++.+..+|+..... .|+...|...+....+.++ .+....+|+..... |.. .+...|...+.... ++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788888888888773 4688888888877666653 35566677766553 433 35677777776533 356
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHH
Q 006303 306 KFTLEVYKNMQKLGVMADMASYNILLKACC-------------LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (651)
+.+..+|++........-...|......-. ..+.+..|..+++.+...... .+...|...+.-
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~----~s~~~W~~y~~~ 181 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG----WSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHH
Confidence 678888888876321111112221111100 112233444555544432110 133355554443
Q ss_pred HHccc-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 373 FADAK-------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 373 ~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
-...+ ..+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.... +.+...+. .|..
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~ 254 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGL 254 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHH
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHh
Confidence 22211 1345677888888753 446778888888888899999999999999887 33332222 2333
Q ss_pred cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH
Q 006303 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 525 (651)
....++. ++.+....... ...... . . ........|...+...
T Consensus 255 ~~e~~~~---~~~l~~~~~~~----------------~~~~~~-----------------~-~-~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 255 VMDEEAV---YGDLKRKYSMG----------------EAESAE-----------------K-V-FSKELDLLRINHLNYV 296 (493)
T ss_dssp HTTCTHH---HHHHHHHTC---------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred hcchhHH---HHHHHHHHHhh----------------ccchhh-----------------h-h-cccccHHHHHHHHHHH
Confidence 2222222 22222110000 000000 0 0 0011123454445544
Q ss_pred h--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcC-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006303 526 C--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS-GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 526 ~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 602 (651)
. ++.+.|..+|+.+ +. ...+..+|......-... ++.+.|..+|+...+.. .-++..|...++-..+.|+.+.|
T Consensus 297 ~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 2 3688999999999 32 122444554322222222 36999999999998852 22456677788888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (651)
Q Consensus 603 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 641 (651)
..+|+++. -....|...+.-=...|+.+.++.++
T Consensus 374 R~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 374 RALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp HHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999983 25788888888778889988877733
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=4.9e-06 Score=78.75 Aligned_cols=178 Identities=11% Similarity=-0.003 Sum_probs=98.8
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 152 (651)
.+...+..+...|++++|+..++..+.......... .....+..++..+...|++++|+..+++..+...... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~ 152 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ--QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVY 152 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chH
Confidence 334445555666666666666666555422111110 1122223344445556666666666666654311110 011
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCC----ccHHHHH
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD----ILFCNFV 228 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~l~ 228 (651)
.....+...+..+...|++++|+..|++.+... ...+.+. .+++.++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~-----------------------------~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQL-----------------------------EALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------------HhcCccccchHHHHHhHH
Confidence 112233333444445566666666665554210 0111111 4677889
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcC----CCC-cHHhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 006303 229 REFGKKRDLVSALRAYDASKKHL----SSP-NMYICRTIIDVCGICGDYMKS-RAIYEDLR 283 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 283 (651)
..|.+.|++++|+..+++..+.. ... -..+|..+..+|.+.|++++| ...+++..
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999999999999876531 111 156788999999999999999 77677654
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=6.1e-05 Score=71.14 Aligned_cols=129 Identities=10% Similarity=0.044 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH----HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CC----HH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TI 399 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~ 399 (651)
..+..+...|++++|.+++++..... . ..++. ..+..+...+...+++++|+..++++...... ++ ..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~--~-~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE--E-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--C-CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccc--c-CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34667788899999999999887621 1 12232 13345667777788999999999998874222 22 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 400 TWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPN-SQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
+++.+...|...|++++|..+|+++.+. +..+. ..++..+..+|.+.|++++|...+++..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6888888999999999999999988742 11122 2367778888889999999988887654
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.49 E-value=6.1e-06 Score=66.45 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=89.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
...+......|.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|+..|++.++... .+...|..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~ 86 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHH
Confidence 456778888999999999999999998874 245678899999999999999999999999988653 36788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 404 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
+..++...|++++|.+.|++..+.. +-+...+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 9999999999999999999998874 3344444444
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=8.2e-06 Score=69.43 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=107.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++..... +.+...+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 456777888899999999999999998874 24467889999999999999999999999998764 346788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHhhh
Q 006303 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI--LLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 404 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
+..++...|++++|...|++..+.. +.+...+.. ....+.+.|++++|+..+.....
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998875 334555533 34447788999999999987654
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.44 E-value=9.8e-06 Score=72.43 Aligned_cols=132 Identities=17% Similarity=0.083 Sum_probs=87.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 303 (651)
+..+...+...|++++|+..|++.. .|+..++..+...|...|++++|+..|++..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----------------- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence 3455666777777777777777653 3566677777777777777777777777665431
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC----------ccc-cHHHHHHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----------LKL-DVFTYSTIVKV 372 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~-~~~~~~~l~~~ 372 (651)
+.+...+..+..++...|++++|.+.|+.+.+...... ..| ....+..+..+
T Consensus 68 -----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 68 -----------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 23456677777777788888888888877776321110 011 22566677777
Q ss_pred HHcccCHHHHHHHHHHHHHCC
Q 006303 373 FADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 373 ~~~~~~~~~a~~~~~~m~~~~ 393 (651)
|...|++++|...|++..+..
T Consensus 131 ~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHccCHHHHHHHHHHHHHcC
Confidence 777777777777777777653
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=0.00029 Score=66.41 Aligned_cols=134 Identities=9% Similarity=0.049 Sum_probs=94.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc----HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC---CC
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGV---TP 396 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~ 396 (651)
...+...+..+...|++++|.+.++...+... ..++ ...+..+...+...|++++|+..+++...... .+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE---YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34555677788899999999999988776311 0111 12244466677788899999999998875421 11
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 397 N--TITWSSLINACANAGLVEQAMHLFEEMLQ---AGC-EP--NSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 397 ~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
. ..+++.+...|...|++++|..+|++..+ ... .+ ...++..+..+|.+.|++++|+..+++..
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 45788889999999999999999998873 211 11 12577888888999999999999887654
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=1.1e-05 Score=65.33 Aligned_cols=120 Identities=11% Similarity=0.058 Sum_probs=99.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++..... +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHH
Confidence 4567778888999999999999999998874 24467788889999999999999999999998764 33678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (651)
.+...+...|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 89999999999999999999998875 44667788888888877765
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=1.4e-05 Score=63.94 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=92.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
...+..+...+...|++++|.+.|+++... .+.+...+..+...+...|++++|..+++++.... +.+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHH
Confidence 567788888899999999999999998874 23467788889999999999999999999988764 346778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 404 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
+...+...|++++|...|+++.+.. +.+...+..+..++.+
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 9999999999999999999988764 3455556555555544
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.43 E-value=1.9e-06 Score=71.72 Aligned_cols=97 Identities=10% Similarity=-0.041 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 404 (651)
..+..+...+.+.|++++|...|+++... -+.+...|..+..+|...|++++|+..|++....... +...|..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~l 110 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHH
Confidence 34445555555666666666666666553 1234455555666666666666666666666554322 44555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 006303 405 INACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 405 l~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
..+|.+.|++++|...|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666665554
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.41 E-value=8e-06 Score=73.03 Aligned_cols=129 Identities=10% Similarity=-0.105 Sum_probs=108.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
.+..+...+...|++++|.+.|++.. .++...+..+...|...|++++|+..|++..... +.+...+..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg 78 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 45567778889999999999998763 4688899999999999999999999999998764 34778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhcc
Q 006303 406 NACANAGLVEQAMHLFEEMLQAGCE--------------P-NSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
.++...|++++|...|++..+.... | ....+..+..+|.+.|++++|.+.|++.....
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999885421 1 22678888999999999999999999987664
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.38 E-value=9.3e-06 Score=65.98 Aligned_cols=120 Identities=14% Similarity=0.089 Sum_probs=96.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 400 (651)
+.+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|+..+++..+.. +.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 86 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG 86 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence 345678888889999999999999999998863 23467788889999999999999999999988764 336788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006303 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (651)
Q Consensus 401 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (651)
+..+..++.+.|++++|...|++..+.. +.+...+..+..++.+.|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8889999999999999999999988764 234456666666666554
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=2e-05 Score=72.11 Aligned_cols=184 Identities=7% Similarity=-0.134 Sum_probs=105.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC-cHHhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCcccH-------------
Q 006303 233 KKRDLVSALRAYDASKKHLSSP-NMYICRTI-------IDVCGICGDYMKSRAIYEDLRSQNVTLNI------------- 291 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~------------- 291 (651)
..++...|.+.|.++.+. .| ....|..+ ..++.+.++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 578888888888888874 34 45677766 4455555555555555544433 12211
Q ss_pred ---------HHH--HHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcc
Q 006303 292 ---------YVF--NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360 (651)
Q Consensus 292 ---------~~~--~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 360 (651)
..+ .+.+....|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.... .+
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~------~~ 165 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK------WP 165 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG------CS
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc------cC
Confidence 001 1111122356667776666665533 3332444455566777777777777764432 11
Q ss_pred cc---HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 361 LD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 361 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
++ ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 23556666777777777777777777764322143 2345556666777777777777777777663
No 130
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.37 E-value=7.3e-05 Score=70.84 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-------HHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGN-------TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 379 (651)
++++.++++.+.. +-|...|+.....+.+.++ ++++++.+++.... .+-|...|+.+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCC
Confidence 4444444444433 2245555555555544443 45566666555543 234455555554444444332
Q ss_pred --------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 380 --------------------QMALKVKEDMLSAG-----VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 380 --------------------~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
.........+...+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222211 1346666777777777777777777777776543
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=1.9e-06 Score=80.94 Aligned_cols=193 Identities=6% Similarity=-0.054 Sum_probs=120.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|+++++. .|+ ...++..++..+...|++++|+..+++..+ ..|+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~- 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPL------VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSV- 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCH-
Confidence 567788889999999999999999999988 565 245566778889999999999999999997 455432
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHH-hhhCCCCCccHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY-ACIVPRADILFCNFVR 229 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~l~~ 229 (651)
..+......+...|++++|+..|++.+... |.+...+...+....+..+....... -...+.+..+...+..
T Consensus 73 -----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 145 (281)
T 2c2l_A 73 -----KAHFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR 145 (281)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 233344445666899999999999987644 33321111111111111111111111 1233444444444433
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 285 (651)
. ..|++++|++.++...+. .|+ ......+...+.+. +.+++|.++|....+.
T Consensus 146 l--~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 146 L--IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp H--HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred H--HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2 257888888888777663 343 33334444444444 5677788888776543
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.35 E-value=8.2e-06 Score=67.89 Aligned_cols=83 Identities=11% Similarity=-0.076 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
|++++|...|++..... +.+...|..+..+|...|++++|+..|++...+ .+.+...|..+..+|...|++++|
T Consensus 50 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~P~~~~~~~~lg~~~~~lg~~~eA 123 (151)
T 3gyz_A 50 GRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKNDYTPVFHTGQCQLRLKAPLKA 123 (151)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CCCCcHHHHHHHHHHHHcCCHHHH
Confidence 44555555555544442 223444444444555555555555555544442 122334444444455555555555
Q ss_pred HHHHHHHHH
Q 006303 383 LKVKEDMLS 391 (651)
Q Consensus 383 ~~~~~~m~~ 391 (651)
...|++.++
T Consensus 124 ~~~~~~al~ 132 (151)
T 3gyz_A 124 KECFELVIQ 132 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.35 E-value=2.5e-05 Score=73.15 Aligned_cols=194 Identities=9% Similarity=-0.120 Sum_probs=125.0
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
...+..+...+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|+..+++..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-------------- 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------
Confidence 35667778888889999999999998887432 267788888888999999999999888877652
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
+.+...+..+..++...|++++|...|+...++............+..+ ...+...
T Consensus 69 --------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~-- 124 (281)
T 2c2l_A 69 --------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKR-- 124 (281)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHH--
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHH--
Confidence 2356778888899999999999999999888754222111111112111 1111111
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc-CChhHHHHHHHH
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-CCNILLQACVEA-CQFDRAFRLFRS 458 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~-g~~~~a~~~~~~ 458 (651)
+..........+......+.. + ..|+.++|++.+++..+. .|+.. ....+-..+.+. +.++++.++|.+
T Consensus 125 -----~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 125 -----WNSIEERRIHQESELHSYLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp -----HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222333444444443333 2 268889999888887765 45443 333444444444 668889999987
Q ss_pred hhhc
Q 006303 459 WTLS 462 (651)
Q Consensus 459 ~~~~ 462 (651)
..+.
T Consensus 196 a~~~ 199 (281)
T 2c2l_A 196 VDEK 199 (281)
T ss_dssp SSCT
T ss_pred hhcc
Confidence 7654
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.33 E-value=2.3e-05 Score=63.07 Aligned_cols=98 Identities=8% Similarity=0.016 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
...+......|.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..|++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3467788899999999999999999999875 3478899999999999999999999999999875 5577889999999
Q ss_pred HHhcCChhHHHHHHHHhhhc
Q 006303 443 CVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~ 462 (651)
|...|++++|++.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=3.8e-05 Score=72.59 Aligned_cols=172 Identities=9% Similarity=-0.080 Sum_probs=97.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCC-CcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSS-PNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
.+..+...|++++|...+++..+.... |+. ..+..+...+...|++++|+..|++........+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~---------- 150 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID---------- 150 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC----------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc----------
Confidence 456677778888888888777763221 221 12334555566666777777777776653211000
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-Ccccc-HHHHHHHHHHHHcccCH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLD-VFTYSTIVKVFADAKWW 379 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~ 379 (651)
..-...+++.+...|...|++++|...|+++.+....- ...+. ..++..+...|.+.|++
T Consensus 151 ------------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 151 ------------------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 00012246666666667777777777666665322210 12333 34666677777777777
Q ss_pred HHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006303 380 QMALKVKEDMLSA----GVTPN-TITWSSLINACANAG-LVEQAMHLFEEMLQ 426 (651)
Q Consensus 380 ~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 426 (651)
++|+..+++..+. +..+. ..+|..+..++.+.| ++++|.+.+++...
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777766665532 22222 456666777777777 35777777766654
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.32 E-value=9.8e-06 Score=78.21 Aligned_cols=131 Identities=12% Similarity=-0.041 Sum_probs=112.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc----------------HHHHHHHHHHHHcccCHHHHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------------VFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
+...+..+...+.+.|++++|...|++...+ .|+ ...|..+..+|.+.|++++|+..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW------LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567888889999999999999999999884 233 478999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHhhh
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA-FRLFRSWTL 461 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 461 (651)
++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+++ ...|+.|..
T Consensus 220 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 220 NKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999875 3378899999999999999999999999999875 45677888899999999999988 556666653
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=1.5e-05 Score=70.56 Aligned_cols=165 Identities=15% Similarity=0.001 Sum_probs=107.2
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHH
Q 006303 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (651)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~ 311 (651)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++....
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------- 55 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-------------------------- 55 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--------------------------
Confidence 456888888885555543 12235667888888888889999988888876542
Q ss_pred HHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcc--ccHHHHHHHHHHHHcccCHHHHHHHHHH
Q 006303 312 YKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK--LDVFTYSTIVKVFADAKWWQMALKVKED 388 (651)
Q Consensus 312 ~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 388 (651)
+. ..+.. ....++..+...+...|++++|.+.+++.....+..... .....+..+...+...|++++|...+++
T Consensus 56 ~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 56 AQ---KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HH---TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HH---HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 10 11111 134567778888889999999999998887753322101 1234577778888888888888888887
Q ss_pred HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 389 MLSA----GVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 389 m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.... +.. .-..++..+...+...|++++|...+++..+
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7642 111 0123456677778888888888888777654
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.27 E-value=4.2e-05 Score=64.93 Aligned_cols=129 Identities=14% Similarity=-0.057 Sum_probs=91.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006303 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (651)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 336 (651)
..+..+...+...|++++|...|++..+.. +.+...+..+...+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~~a~~~~~ 59 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN----------------------------------PSNAIYYGNRSLAYLR 59 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------------CCChHHHHHHHHHHHH
Confidence 345666666777777777777777665431 2356677788888888
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCH
Q 006303 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS--LINACANAGLV 414 (651)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--ll~~~~~~g~~ 414 (651)
.|++++|.+.+++.... .+.+...+..+..++...|++++|...|+++..... .+...+.. .+..+.+.|++
T Consensus 60 ~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 60 TECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 89999999988888774 244567788888888889999999999988887532 24444433 33346677888
Q ss_pred HHHHHHHHHHH
Q 006303 415 EQAMHLFEEML 425 (651)
Q Consensus 415 ~~a~~~~~~~~ 425 (651)
++|...+....
T Consensus 134 ~~A~~~~~~~~ 144 (166)
T 1a17_A 134 ERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHcccchH
Confidence 88888877654
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=1.6e-05 Score=70.31 Aligned_cols=159 Identities=10% Similarity=-0.026 Sum_probs=114.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc-cccHHHHHHHHHHHHcccCHHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
|++++|.+.++.+... ......++..+...+...|++++|...+++.......... +.....+..+...|...|++++
T Consensus 6 g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 6 HDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp -CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555533333221 1235678888899999999999999999998875433322 2234578888999999999999
Q ss_pred HHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcCChh
Q 006303 382 ALKVKEDMLSA----GVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQAG---CEPN--SQCCNILLQACVEACQFD 450 (651)
Q Consensus 382 a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~ll~~~~~~g~~~ 450 (651)
|...+++..+. +..+ ....+..+...+...|++++|...+++..+.. ..+. ..++..+..++...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 99999887753 2111 23467888889999999999999999887531 1111 224577888899999999
Q ss_pred HHHHHHHHhhhc
Q 006303 451 RAFRLFRSWTLS 462 (651)
Q Consensus 451 ~a~~~~~~~~~~ 462 (651)
+|.+.+++....
T Consensus 165 ~A~~~~~~al~~ 176 (203)
T 3gw4_A 165 EAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=3.1e-05 Score=62.40 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=84.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--CCC----
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV--TPN---- 397 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~---- 397 (651)
...+..+...+.+.|++++|++.|++..++ .+.+...|..+..+|...|++++|+..+++.++... .++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 446777888999999999999999998875 244577888999999999999999999998876421 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
..+|..+..++...|++++|++.|++..+. .|++.+...
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 246777888899999999999999998875 466655443
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=5.7e-06 Score=68.89 Aligned_cols=93 Identities=8% Similarity=-0.070 Sum_probs=41.8
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344444444444444444444444332 1134444444444444444444444444444432 2233344444444444
Q ss_pred cCChhHHHHHHHHhh
Q 006303 446 ACQFDRAFRLFRSWT 460 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~ 460 (651)
.|++++|...|++..
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555544444443
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.23 E-value=4.4e-05 Score=61.34 Aligned_cols=99 Identities=11% Similarity=-0.010 Sum_probs=82.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++..+... .+...|.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 76 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 3456777888888999999999999998874 244677888899999999999999999999887643 3677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
.+..++...|++++|...|++..+.
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 8999999999999999999988775
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=0.0013 Score=62.40 Aligned_cols=221 Identities=9% Similarity=0.007 Sum_probs=151.0
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACANA-G- 412 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g- 412 (651)
+.+..++|+++++.+..+ -+-+..+|+.--..+...| ++++++.+++.++....+ +..+|+.-...+.+. +
T Consensus 66 ~~e~se~AL~lt~~~L~~-----nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM-----NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred hCCCCHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 334456888999888874 2344566777777777777 599999999999987644 778888877777776 6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHhhhcccccccccccCCchhhhhhhhh
Q 006303 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD--------RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484 (651)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (651)
++++++++++++.+.. +-+...|+.-..++.+.|.++ ++++.++++.+.+
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--------------------- 197 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--------------------- 197 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---------------------
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---------------------
Confidence 7889999999998775 456777777666666666666 8888888887654
Q ss_pred hccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh---------cHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006303 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---------DYYRVKALMNEMRTVGLSPNHISWTILI 555 (651)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~a~~~~~~~~~~~~~p~~~~~~~li 555 (651)
.-|...|+..-..+.+ .++++.+.+++++.... -|...|+-+-
T Consensus 198 ---------------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr 249 (349)
T 3q7a_A 198 ---------------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLR 249 (349)
T ss_dssp ---------------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ---------------------------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 3345555555444332 15678888888877532 3677787777
Q ss_pred HHHhcCCCh--------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 556 DACGGSGNV--------------------EGALQILKIMREDG-----MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 556 ~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
..+.+.|+. ........++...+ -.+....+..+...|...|+.++|.++++.+.
T Consensus 250 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 250 GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 767666553 22333333332221 13577788888999999999999999999987
Q ss_pred HC
Q 006303 611 HY 612 (651)
Q Consensus 611 ~~ 612 (651)
+.
T Consensus 330 ~~ 331 (349)
T 3q7a_A 330 SE 331 (349)
T ss_dssp HT
T ss_pred hh
Confidence 53
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.21 E-value=1.5e-05 Score=68.80 Aligned_cols=119 Identities=10% Similarity=0.118 Sum_probs=93.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHH-HHcccCH--
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-FADAKWW-- 379 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 379 (651)
++++.|...+++..... +.+...+..+...|...|++++|...|+.+.... +.+...+..+..+ +...|++
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhcCCcch
Confidence 45666666776665543 3467888889999999999999999999988752 3466677788888 7788998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 380 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
++|...++++..... .+...+..+...+...|++++|...|+++.+..
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999887642 367788888899999999999999999998864
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.21 E-value=8.6e-06 Score=67.78 Aligned_cols=100 Identities=8% Similarity=-0.073 Sum_probs=85.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|+..|++...... .+...+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~ 93 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHH
Confidence 4556777888899999999999999998874 245777888999999999999999999999987643 3667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
.+..++...|++++|...|++..+..
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 89999999999999999999988753
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=7.3e-05 Score=58.91 Aligned_cols=110 Identities=19% Similarity=0.070 Sum_probs=85.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|.+.|+..... .+.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHH
Confidence 3456777888888899999999999988874 23467788888888999999999999999888764 23677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
.+..++...|++++|...+++..+.. +.+...+..+
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 88889999999999999999888764 3344444433
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.19 E-value=7.1e-05 Score=59.67 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=78.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006303 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (651)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (651)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~la~~~~ 54 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------------PNNAEAWYNLGNAYY 54 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------------------cCcHHHHHHHHHHHH
Confidence 4567777777777788888887777766431 224556677777778
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
..|++++|...++.+... .+.+...+..+...+...|++++|...++++.+... .+...+..+...+..
T Consensus 55 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 55 KQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence 888888888888877763 234566777778888888888888888888776532 244555555544443
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.19 E-value=4.6e-05 Score=73.45 Aligned_cols=129 Identities=9% Similarity=-0.032 Sum_probs=77.2
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
..+..+...|.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..|++..+..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 5677788889999999999999999887533211 3455555555555555555555555554331
Q ss_pred cccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHH
Q 006303 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (651)
Q Consensus 288 ~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (651)
+.+...|..+..+|...|++++|...|+++.++ .+.+...+.
T Consensus 227 ---------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~a~~ 268 (336)
T 1p5q_A 227 ---------------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAKT 268 (336)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHH
T ss_pred ---------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCHHHHH
Confidence 124455555666666666666666666666553 123344555
Q ss_pred HHHHHHHcccCHHHH-HHHHHHH
Q 006303 368 TIVKVFADAKWWQMA-LKVKEDM 389 (651)
Q Consensus 368 ~l~~~~~~~~~~~~a-~~~~~~m 389 (651)
.+..++...|+++++ ..+|+.|
T Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666555 2344444
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.17 E-value=2e-05 Score=68.01 Aligned_cols=121 Identities=9% Similarity=0.048 Sum_probs=99.5
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC
Q 006303 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGL 413 (651)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~ 413 (651)
...|++++|...++..... .+.+...|..+...|...|++++|...|+++.... +.+...+..+..+ +...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-----NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHH-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCC
Confidence 4568889999999988764 24567889999999999999999999999998764 2367788888888 778999
Q ss_pred H--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 414 V--EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 414 ~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
+ ++|...|+++.+.. +.+...+..+..+|...|++++|...|++....
T Consensus 95 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8 99999999999875 456778888999999999999999999998764
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.15 E-value=4.9e-05 Score=61.59 Aligned_cols=115 Identities=11% Similarity=0.008 Sum_probs=69.8
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..+...+.+.|++++|+..|++..+... .+..++..+...+...|++++|+..+++..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 80 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--------------- 80 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------
Confidence 4556666677777777777777777665321 245566666666777777777777666655431
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (651)
+.+...+..+..++...|++++|.+.|++..+. .+.+...+..+..++...
T Consensus 81 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 81 -------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL-----DSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CGGGTHHHHHHHHHHHHH
T ss_pred -------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHh
Confidence 224556666667777777777777777776653 122334455555544443
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=0.00083 Score=63.34 Aligned_cols=228 Identities=8% Similarity=-0.021 Sum_probs=131.4
Q ss_pred cchH-HHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHH
Q 006303 168 SGEV-EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (651)
Q Consensus 168 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 246 (651)
.|.+ ++|+.+++.++..+ |...++|..-...+...+.. .++ . .....+++++.+++.
T Consensus 42 ~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~---------~~~--~---------~~~~~l~~EL~~~~~ 99 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETE---------KSP--E---------ESAALVKAELGFLES 99 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHH---------SCH--H---------HHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhccc---------ccc--h---------hhhHHHHHHHHHHHH
Confidence 3444 47899999988855 77777776554433221110 000 0 001125566667776
Q ss_pred HHhcCCCCcHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHh--hcCC-hHHHHHHHHHHHHCCCC
Q 006303 247 SKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHD-LKFTLEVYKNMQKLGVM 321 (651)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~-~~~a~~~~~~m~~~~~~ 321 (651)
+....+ .+..+|+.-..++.+.+ ++++++++++.+.+.... |...|+.--.+ ..+. .+++++.++.+.+.. +
T Consensus 100 ~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p 176 (331)
T 3dss_A 100 CLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-F 176 (331)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-S
T ss_pred HHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-C
Confidence 666422 35666666666666666 367777777777665433 44444433332 2244 467777777776654 3
Q ss_pred CCHHhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc-----------
Q 006303 322 ADMASYNILLKACCLA--------------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----------- 376 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 376 (651)
-|...|+.....+.+. +.++++++.++..... .+-|...|+-+-..+.+.
T Consensus 177 ~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~ 251 (331)
T 3dss_A 177 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGAGSGRCELSVEKS 251 (331)
T ss_dssp CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHSSSCGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccCccccchHHH
Confidence 3666666665555544 3467788888877764 355667777655555554
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcC
Q 006303 377 KWWQMALKVKEDMLSAGVTPNTITWSSLIN-----ACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
+.++++++.++++.+. .||. .|..+.. .....|..+++...+.++.+.+
T Consensus 252 ~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 252 TVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578888888888875 3443 2322211 2223566777777888777653
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.13 E-value=7.4e-05 Score=60.18 Aligned_cols=119 Identities=13% Similarity=-0.068 Sum_probs=82.5
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006303 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (651)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (651)
+...+..+...+...|++++|...|++..... +.+...+..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~ 56 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN----------------------------------PANAVYFCNRAAAY 56 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----------------------------------CCCHHHHHHHHHHH
Confidence 34556666666777777777777777665431 23556677777788
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (651)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 413 (651)
...|++++|.+.++..... .+.+...+..+...+...|++++|...|++..+... .+...+..+..++.+.|+
T Consensus 57 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 57 SKLGNYAGAVQDCERAICI-----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHhhchHHHHHHHHHHHhc-----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 8888888888888887763 234466777778888888888888888888776532 256666677777666654
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.12 E-value=6.4e-05 Score=63.77 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=87.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|++.|++..+. .+.+...|..+..+|...|++++|+..|++.++... .+...|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 83 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 4667888889999999999999999999874 244678899999999999999999999999998753 3688899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
.+..++...|++++|...|++..+..
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998764
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.12 E-value=8.6e-05 Score=59.61 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=87.2
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34567788889999999999999999999864 3378899999999999999999999999999875 456778999999
Q ss_pred HHHhcCChhHHHHHHHHhhhc
Q 006303 442 ACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~ 462 (651)
++...|++++|...|++....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=0.00011 Score=60.88 Aligned_cols=112 Identities=10% Similarity=-0.007 Sum_probs=90.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc----HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 397 (651)
.+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+..+|...|++++|+..+++..... +.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGD 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccC
Confidence 3567788888999999999999999999987 3455 5778888999999999999999999988764 336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
...+..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 7788889999999999999999999998864 334444444333
No 156
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=2e-05 Score=66.53 Aligned_cols=149 Identities=7% Similarity=-0.113 Sum_probs=98.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..+++.+... +..-.......++..++..+...|++++|+..+++..+.. +....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA--RQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhCC
Confidence 5678888999999999999999999988762 2211111224566788888999999999999999987741 11100
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
.......+...+..+...|++++|+..+++........ ++.. ....++..+...
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~----------~~~~~~~~la~~ 138 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----------------KDRI----------GEGRACWSLGNA 138 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHH----------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------------cchH----------hHHHHHHHHHHH
Confidence 11122334444445666788888888888766421100 0000 001455667788
Q ss_pred HhhcCCHHHHHHHHHHHHh
Q 006303 231 FGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~ 249 (651)
|...|++++|.+.+++..+
T Consensus 139 ~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 8888888888888887665
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=5e-05 Score=61.25 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=88.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--CCC----
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV--TPN---- 397 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~---- 397 (651)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...++++..... .++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 456777888888999999999999988874 244677888888999999999999999998876532 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (651)
..++..+..++.+.|++++|...|+++.+.. |+......+..+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 6678888889999999999999999988864 5665555554443
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.10 E-value=1.6e-05 Score=70.17 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=18.4
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 249 (651)
..+..+...+.+.|++++|+..|++..+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666677777777777776665
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.08 E-value=0.0001 Score=60.14 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=52.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|...|+..... .+.+...|..+..++...|++++|...+++..+... .+...+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 81 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHF 81 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 4445555555555666666666666555542 122344555555555555555555555555554431 2444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.+..++...|++++|...|++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.07 E-value=3.9e-05 Score=59.85 Aligned_cols=98 Identities=9% Similarity=0.025 Sum_probs=64.8
Q ss_pred ccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHH
Q 006303 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRT 261 (651)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 261 (651)
|.+...+..++..+...|++++|...++.. |.+..++..+...+...|++++|++.|++..+... . +..++..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHH
Confidence 334444555555555666666665555442 44456667777777778888888888887776432 2 4667777
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCC
Q 006303 262 IIDVCGIC-GDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 262 l~~~~~~~-g~~~~a~~~~~~~~~~g 286 (651)
+..++... |++++|.+.++......
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77778888 88888888887776653
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.07 E-value=7.4e-05 Score=65.75 Aligned_cols=135 Identities=12% Similarity=-0.044 Sum_probs=98.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-----------HHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-----------VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
...+..+...+...|++++|.+.|++............. ...|..+..+|...|++++|+..+++.+..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445667788888999999999999998874211100000 267888899999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHhh
Q 006303 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWT 460 (651)
Q Consensus 393 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~ 460 (651)
. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++. ..|..+.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 3477889999999999999999999999998874 446677877888877777776665 4444443
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.07 E-value=5.3e-05 Score=59.09 Aligned_cols=98 Identities=12% Similarity=0.038 Sum_probs=57.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC--CHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP--NTITW 401 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~ 401 (651)
...+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...+++..+.. +. +...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHH
Confidence 344555566666666666666666666553 12344555666666666666666666666666542 22 35555
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 006303 402 SSLINACANA-GLVEQAMHLFEEMLQA 427 (651)
Q Consensus 402 ~~ll~~~~~~-g~~~~a~~~~~~~~~~ 427 (651)
..+..++.+. |++++|.+.+++..+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5666666666 6666666666666554
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.07 E-value=4.7e-05 Score=62.80 Aligned_cols=95 Identities=14% Similarity=-0.045 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
.+..+...+.+.|++++|...|+.+... .+.+...|..+..+|...|++++|+..|++...... .+...+..+.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 93 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHH
Confidence 3334444455555555555555555442 122344444555555555555555555555544321 1334444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006303 406 NACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.++...|++++|...|++..+
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555443
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.07 E-value=6.5e-05 Score=61.91 Aligned_cols=100 Identities=14% Similarity=-0.004 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
+...+..+...+.+.|++++|...|++...... .+...|..+..++.+.|++++|...|++..+.. +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 345566777888899999999999999887643 377888888889999999999999999998875 456667788888
Q ss_pred HHHhcCChhHHHHHHHHhhhcc
Q 006303 442 ACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
+|...|++++|.+.|+......
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8999999999999998887664
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.03 E-value=0.0034 Score=59.15 Aligned_cols=144 Identities=10% Similarity=-0.053 Sum_probs=80.5
Q ss_pred HHHhhhhcChh-HHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHh----hcchHHHHHHHHHHHHhcCCCccccchH
Q 006303 120 IVKSIREGRID-CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL----DSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (651)
Q Consensus 120 ~~~~~~~g~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 194 (651)
+....+.|.++ +|+.+++.++. +.|+..+....-..++....... ....+++++.+++.++... |.+..+|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW 111 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTW 111 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHH
Confidence 33345667776 89999999998 66766544333333333211100 0112678888888888755 7777777
Q ss_pred HHHHHHHhcCCC--hHHHHHHhhhC----CCCCccHHHHHHHHhhcCC-HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHH
Q 006303 195 FRIVQLCVNKPD--VNLAIRYACIV----PRADILFCNFVREFGKKRD-LVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (651)
Q Consensus 195 ~~l~~~~~~~~~--~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (651)
..-...+...+. +++++.+++.+ |.+..+|+.-.-.+...|. ++++++.++.+.+..+ -|..+|+.....+.
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 776666655553 45555554443 4444555555444455555 3566666666555332 24445555444443
Q ss_pred h
Q 006303 268 I 268 (651)
Q Consensus 268 ~ 268 (651)
+
T Consensus 191 ~ 191 (331)
T 3dss_A 191 Q 191 (331)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.03 E-value=0.00012 Score=59.75 Aligned_cols=102 Identities=10% Similarity=-0.015 Sum_probs=90.6
Q ss_pred cccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
+.+...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4567889999999999999999999999998864 3368899999999999999999999999999875 4567889999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcc
Q 006303 440 LQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 440 l~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
..+|...|++++|...|++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999887654
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00021 Score=71.86 Aligned_cols=215 Identities=6% Similarity=-0.091 Sum_probs=119.7
Q ss_pred HHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHH
Q 006303 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 162 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
+..+.+.|++++|++.|.+++.......+..... +........ ...++..|+..|...|++++|.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~------~~~al~~l~~~y~~~~~~~~a~ 75 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA---------SVDDKRRNE------QETSILELGQLYVTMGAKDKLR 75 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS---------SBCSHHHHH------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH---------HHHHHHhhh------HHHHHHHHHHHHHHCCCHHHHH
Confidence 4455568999999999999887553322211000 000000000 0123455666777777777777
Q ss_pred HHHHHHHhcCCC-CcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccc-HHHHHHHHHhh--cCChHHHH
Q 006303 242 RAYDASKKHLSS-PNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVTLN-IYVFNSLMNVN--AHDLKFTL 309 (651)
Q Consensus 242 ~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~ll~~~--~~~~~~a~ 309 (651)
+.+..+...-.. ++. .+.+.+...+...|+++.+..++...... +..+. ..++..+...+ .|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 76 EFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp HHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence 766655432111 111 23333444444556777777766665432 22222 22333333332 26666776
Q ss_pred HHHHHHHHC--CC--CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc--HHHHHHHHHHHHcccCHHHH
Q 006303 310 EVYKNMQKL--GV--MA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 310 ~~~~~m~~~--~~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a 382 (651)
.+++++... +. .+ ...++..++..|...|++++|..++++.......-..++. ...+..+...+...|++++|
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 666665432 11 11 2457888889999999999999999888764332211111 23566677777888899998
Q ss_pred HHHHHHHHH
Q 006303 383 LKVKEDMLS 391 (651)
Q Consensus 383 ~~~~~~m~~ 391 (651)
...|.+..+
T Consensus 236 ~~~~~~a~~ 244 (434)
T 4b4t_Q 236 FSYFFESFE 244 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777653
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.01 E-value=0.00028 Score=55.40 Aligned_cols=99 Identities=13% Similarity=-0.014 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45567888889999999999999999998764 3378889999999999999999999999999875 456788889999
Q ss_pred HHHhcCChhHHHHHHHHhhhc
Q 006303 442 ACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~ 462 (651)
++...|++++|.+.+++....
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999987754
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.01 E-value=0.00011 Score=59.09 Aligned_cols=98 Identities=8% Similarity=0.052 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPN----SQCC 436 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 436 (651)
...+..+...+.+.|++++|+..|++.++... -+...|..+..+|.+.|++++|++.+++.++... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45677889999999999999999999998753 3788899999999999999999999999887531 122 2367
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
..+..++...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788889999999999999998765
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.00 E-value=9.8e-05 Score=62.60 Aligned_cols=102 Identities=16% Similarity=0.054 Sum_probs=90.2
Q ss_pred cccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
+.+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3456678889999999999999999999999874 3378899999999999999999999999999885 4568889999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcc
Q 006303 440 LQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 440 l~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
..+|.+.|++++|...|++.....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999988764
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00057 Score=68.59 Aligned_cols=199 Identities=11% Similarity=-0.102 Sum_probs=138.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCc----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-Cccc
Q 006303 228 VREFGKKRDLVSALRAYDASKKHLSSPN----------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLN 290 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~ 290 (651)
...+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778999999999998887533211 1247788999999999999999999876531 1122
Q ss_pred HH---HHHHHHHh---hcCChHHHHHHHHHHHH----CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc
Q 006303 291 IY---VFNSLMNV---NAHDLKFTLEVYKNMQK----LGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (651)
Q Consensus 291 ~~---~~~~ll~~---~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 359 (651)
.. .....+.. ..++.+.+..++..... .+..+. ..++..+...|...|++++|..+++++........-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 22222332 22688888888887654 232232 557788899999999999999999988764322211
Q ss_pred c-ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 360 K-LDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 360 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
. .....+..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 22457888899999999999999999887642 11111 24566667777888999999988877754
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=0.00012 Score=61.61 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=104.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-CccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CC----
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN---- 397 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~---- 397 (651)
..++..+...+...|++++|...+++........ ....-...+..+...+...|++++|...+++..+.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3467788889999999999999999988754321 11111247888899999999999999999988753111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQA----GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
...+..+...+...|++++|...+++..+. +.. .....+..+...|...|++++|.+.+++....
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778888999999999999999988754 111 11346777888899999999999999887643
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.93 E-value=0.00011 Score=58.46 Aligned_cols=95 Identities=9% Similarity=-0.088 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
+..+...+.+.|++++|...|+++.+. .+.+...|..+..++...|++++|+..|++..+... -+...+..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 444556666777777777777777663 233556666677777777777777777777766532 25566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 006303 407 ACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~ 427 (651)
++.+.|++++|...|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766643
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.92 E-value=0.00012 Score=58.33 Aligned_cols=97 Identities=13% Similarity=0.032 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45667788999999999999999999864 3378889999999999999999999999999885 446778889999999
Q ss_pred hcCChhHHHHHHHHhhhcc
Q 006303 445 EACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~ 463 (651)
+.|++++|+..+++.....
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887543
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=6.8e-05 Score=75.52 Aligned_cols=60 Identities=7% Similarity=0.061 Sum_probs=47.8
Q ss_pred HhhhccCChHHHHHHHHHHHHhcC---ChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
..+..+|++++|+.++++.++... .|++.. ...++++++..|..+|++++|+.++++.++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLY---VLRLLSIASEVLSYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345678999999999999987632 223222 477789999999999999999999998776
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.88 E-value=0.00022 Score=72.29 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
.+...+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|+..+++..+... .+...+..+..+|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 84 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 84 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3445566789999999999999874 244578899999999999999999999999998753 3778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHH
Q 006303 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQFDRAFRLFRS 458 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~ 458 (651)
.+.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999998874 2233455555555 7888999999999874
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.87 E-value=0.00043 Score=55.58 Aligned_cols=95 Identities=13% Similarity=-0.009 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-H---HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC---HH
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-V---FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN---TI 399 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~ 399 (651)
+..+...+...|++++|.+.|+.+.+. .|+ . ..+..+..++...|++++|...|+++...... + ..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 77 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAG 77 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHH
Confidence 345667788899999999999998873 233 2 47778888999999999999999999876422 3 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 400 TWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
.+..+..++.+.|++++|...|+++.+..
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888899999999999999999998874
No 178
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=0.00078 Score=55.48 Aligned_cols=100 Identities=9% Similarity=-0.057 Sum_probs=87.3
Q ss_pred cccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006303 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 435 (651)
+.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346678888999999999999999999999976 455 6788889999999999999999999998874 446778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 436 CNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 436 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
+..+..+|...|++++|...|++....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888999999999999999999988754
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.84 E-value=0.00028 Score=56.64 Aligned_cols=99 Identities=10% Similarity=0.097 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPN----SQCC 436 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 436 (651)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888889999999999999999998764 34778899999999999999999999999987641 122 6778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
..+..+|.+.|++++|.+.|++....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88899999999999999999988753
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.82 E-value=0.00034 Score=68.20 Aligned_cols=128 Identities=12% Similarity=0.006 Sum_probs=100.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-----------CccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-----------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
..+..+...+.+.|++++|++.|++..+..... ..+.+...|..+..+|.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 446778888999999999999999887621110 023346688899999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006303 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (651)
Q Consensus 394 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 454 (651)
. .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 378889999999999999999999999999874 3466677777777777776665543
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.80 E-value=9.1e-05 Score=58.55 Aligned_cols=90 Identities=14% Similarity=-0.004 Sum_probs=66.1
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 415 (651)
..|++++|+..|++..+.. ..-+.+...+..+..+|...|++++|+..|++..+.... +...+..+..++.+.|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG--LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcC--CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHH
Confidence 3578888888998887620 000234567888888899999999999999998876433 6778888888999999999
Q ss_pred HHHHHHHHHHHcC
Q 006303 416 QAMHLFEEMLQAG 428 (651)
Q Consensus 416 ~a~~~~~~~~~~~ 428 (651)
+|...|++..+..
T Consensus 79 ~A~~~~~~al~~~ 91 (117)
T 3k9i_A 79 QGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999887763
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.80 E-value=0.0002 Score=72.22 Aligned_cols=131 Identities=13% Similarity=0.087 Sum_probs=106.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc---------------HHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---------------VFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
....+..+...+.+.|++++|...|++..++. +.+ ...|..+..+|.+.|++++|+..++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-----EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35577888899999999999999999998853 222 5788999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHhh
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWT 460 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~ 460 (651)
++++... .+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.++.+++. ..+..|.
T Consensus 342 ~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 342 KALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998753 378899999999999999999999999999864 334557888888888888887765 4455544
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.79 E-value=0.00033 Score=57.56 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=57.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-------CccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC-----
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----- 392 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----- 392 (651)
..+......+.+.|++++|+..|++..++.... ..+.+...|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345556667778888888888888887743110 00001225666666666666666666666666553
Q ss_pred CCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 393 GVTP-NTITW----SSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 393 ~~~~-~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.+.| +...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0022 23344 5555555555555555555555544
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00024 Score=71.54 Aligned_cols=137 Identities=5% Similarity=-0.070 Sum_probs=96.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHhc-----CCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 229 REFGKKRDLVSALRAYDASKKH-----LSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..+|++++|+.++++.++. |.. | ...+++.|..+|...|++++|..++++.+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL------------------ 378 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV------------------ 378 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------------------
Confidence 3456789999999998877653 211 2 24578889999999999999999887654
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc--CCccccH-HHHHHHHHHHHcccC
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDV-FTYSTIVKVFADAKW 378 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~~~~~~~~ 378 (651)
.++........+-...+++.|...|...|++++|+.++++...+.+. |.-.|++ .+.+.+..++...++
T Consensus 379 --------~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 379 --------DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp --------HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 33333333222223568899999999999999999999988765432 3223333 345566677778888
Q ss_pred HHHHHHHHHHHHH
Q 006303 379 WQMALKVKEDMLS 391 (651)
Q Consensus 379 ~~~a~~~~~~m~~ 391 (651)
+++|+.+|..+.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.78 E-value=5e-05 Score=60.10 Aligned_cols=87 Identities=8% Similarity=-0.000 Sum_probs=71.0
Q ss_pred cccCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 006303 375 DAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (651)
Q Consensus 375 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (651)
..|++++|+..|++.++.+ -+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999999864 12355778899999999999999999999999885 45677888999999999999999
Q ss_pred HHHHHHhhhc
Q 006303 453 FRLFRSWTLS 462 (651)
Q Consensus 453 ~~~~~~~~~~ 462 (651)
+..+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.78 E-value=0.00067 Score=57.19 Aligned_cols=104 Identities=10% Similarity=0.016 Sum_probs=84.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-----C--------ccccHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-----V--------LKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
...+......+.+.|++++|+..|.......... . .+.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4567778888999999999999999888741100 0 02234678889999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 391 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
... +.+...|..+..++...|++++|...|++..+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 875 3378889999999999999999999999998874
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.73 E-value=0.00097 Score=53.43 Aligned_cols=98 Identities=13% Similarity=-0.013 Sum_probs=64.4
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM---YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 299 (651)
.+..+...+.+.|++++|+..|+.+.+.... +. .++..+..++...|++++|+..|+...+.....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---------- 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---------- 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC----------
Confidence 3455667777788888888888887764321 22 466677777778888888888877776542110
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+.....+..+..++...|++++|...|+.+..
T Consensus 73 ---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 73 ---------------------DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00044556666777777777777777777765
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.72 E-value=4.2e-05 Score=77.59 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=91.7
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|++.|+++++. .|+ ...++..++..+.+.|++++|+..+++..+. .|+.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~-- 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPS------NAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKY-- 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTC--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCC--
Confidence 344556667778899999999999999998 665 3556677888899999999999999999984 4533
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHH--HhcCCChHHHHHHhh
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL--CVNKPDVNLAIRYAC 215 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 215 (651)
...+......+...|++++|++.|++.++.. |.+...+..+..+ +.+.|++++|.+.++
T Consensus 74 ----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 74 ----IKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2233344445666899999999999998854 6666666666555 666677777777666
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.60 E-value=0.001 Score=55.95 Aligned_cols=100 Identities=17% Similarity=0.103 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSA--------G---------VTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 424 (651)
....+......+.+.|++++|+..|.+.+.. . .+.+...|..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888999999999999999998864 1 0113467888999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 425 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
++.. +.+...|..+..+|...|++++|...|++....
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9875 557788999999999999999999999988764
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.59 E-value=0.00017 Score=69.50 Aligned_cols=129 Identities=12% Similarity=-0.003 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH------------------HHHHHHHHHHHcccCHHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV------------------FTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
.+..+...+.+.|++++|...|++.... .|+. ..|..+..+|.+.|++++|+..++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555666666777777766666552 2332 277888889999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHhhhc
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~ 462 (651)
+.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+.+...|.+|...
T Consensus 255 ~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 255 IVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 988764 3367888889999999999999999999887653 2233444444444 23345667777788777644
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.00087 Score=67.59 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=24.1
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKH 250 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 250 (651)
..+..+...|.+.|++++|+..|++..+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~ 297 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW 297 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 56777888888999999999999888773
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.57 E-value=0.0005 Score=66.97 Aligned_cols=124 Identities=10% Similarity=0.003 Sum_probs=82.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhc--------------CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHH
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE--------------GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l 136 (651)
...+..++..+.+.|++++|+..|+++++.- ..|. ...++.+++..+.+.|++++|+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~------~~~~~~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV------ALSCVLNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH------HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4457788889999999999999999998731 1222 3455667777788888888888888
Q ss_pred HHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHH
Q 006303 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA 210 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 210 (651)
++.++ ..|+. ...+......+...|++++|+..|++.++.. |.+...+..+...+...++.+++
T Consensus 297 ~~al~--~~p~~------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 297 LEALE--IDPSN------TKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHT--TCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hCchh------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88887 34432 1223333445556788888888888877644 54544444444444444444433
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.52 E-value=0.0014 Score=53.94 Aligned_cols=101 Identities=12% Similarity=-0.023 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP------NT-----ITWSSLINACANAGLVEQAMHLFEEMLQA---- 427 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~------~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 427 (651)
...+......+...|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3445667778889999999999999998753221 22 38999999999999999999999999886
Q ss_pred -CCCC-CHHHH----HHHHHHHHhcCChhHHHHHHHHhhhcc
Q 006303 428 -GCEP-NSQCC----NILLQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 428 -~~~~-~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
.+.| +...| .....++...|++++|+..|++..+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1134 44577 888899999999999999999887654
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.47 E-value=0.00027 Score=68.08 Aligned_cols=144 Identities=11% Similarity=0.054 Sum_probs=79.1
Q ss_pred HHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccc
Q 006303 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (651)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 192 (651)
...+...+..+...|++++|+..|++.++. .|+.. .+...++.+++...+. ..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~--------------~~~~~~~~~~~~~~l~-----------~~ 231 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF--------------MFQLYGKYQDMALAVK-----------NP 231 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH--------------HHTCCHHHHHHHHHHH-----------TH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch--------------hhhhcccHHHHHHHHH-----------HH
Confidence 344566777889999999999999999874 34321 0112355555543332 12
Q ss_pred hHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHH-H
Q 006303 193 EEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDV-C 266 (651)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~-~ 266 (651)
.+..++.++.+.|++++|...+... |.+..++..+..+|...|++++|+..|++..+. .| +..++..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 4667778888888888888777664 666788888899999999999999999888763 34 34455555555 2
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 006303 267 GICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 267 ~~~g~~~~a~~~~~~~~~~ 285 (651)
...+..+.+...|..|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3446677788888887655
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00028 Score=54.82 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-------SQ 434 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~ 434 (651)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34556666677777777777777777776653 2256667777777777777777777777777653 32 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 006303 435 CCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
.+..+..++...|+.+.|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 4444555555555555554443
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.36 E-value=0.0056 Score=63.21 Aligned_cols=172 Identities=7% Similarity=-0.121 Sum_probs=119.7
Q ss_pred cCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcC----------hhHHHHHHHHHHHcCCCccccccch
Q 006303 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR----------IDCVVGVLKKLNELGVAPLELFDGS 153 (651)
Q Consensus 84 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~----------~~~a~~~l~~~~~~~~~~~~~~~~~ 153 (651)
....++|++.++.++.. .|+.++.... -...+...|+ ++++++.++++.+. .|...
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~------R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y---- 107 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNC------RREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSY---- 107 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHH------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCH----
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHH------HHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCH----
Confidence 34446889999999998 7776554222 2222334445 89999999999984 44332
Q ss_pred hhHHHHHHHHHHhhcc--hHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCC-ChHHHHHHhhhC----CCCCccHHH
Q 006303 154 GFKLLKNECQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIV----PRADILFCN 226 (651)
Q Consensus 154 ~~~~l~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~----~~~~~~~~~ 226 (651)
.++..-.-.+.+.+ +++++++.++++++.. |.+..+|.....++...| .++++.+++..+ |.+..+|+.
T Consensus 108 --~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 108 --GTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp --HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred --HHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 22322222334467 6799999999999865 888889998888888888 788888887665 556677777
Q ss_pred HHHHHhhc--------------CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006303 227 FVREFGKK--------------RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (651)
Q Consensus 227 l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (651)
....+.+. +.++++++.+++.....+ -+..+|+.+...+.+.++.++
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 66665553 567888888888887432 367788888877777776444
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.35 E-value=0.0068 Score=49.20 Aligned_cols=110 Identities=15% Similarity=-0.009 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc----ccCH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWW 379 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 379 (651)
+.++|.+.|++..+.| .++.. |...|...+.+++|.+.|++..+. -+...+..|...|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCccH
Confidence 4556666666666655 22222 555555556666677777766652 355666666666666 6677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006303 380 QMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 380 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 428 (651)
++|+..|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777776654 45666666666666 667777777777776665
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.34 E-value=0.00024 Score=58.28 Aligned_cols=107 Identities=7% Similarity=-0.027 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 247 (651)
.+.+++|++.++..++.. |.+...|..++.++...++++.+.... +.+++|+..|++.
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al--------------------~~~~eAi~~le~A 72 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAK--------------------QMIQEAITKFEEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhH--------------------hHHHHHHHHHHHH
Confidence 588999999999998866 777777777777776665544222111 1256777777777
Q ss_pred HhcCCCC-cHHhHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 248 KKHLSSP-NMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 248 ~~~~~~~-~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
++. .| +..+|..+..+|...| ++++|++.|++..+. .|+...|...+..
T Consensus 73 L~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 73 LLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 663 34 4556666777766553 677777777777665 4555555555444
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.26 E-value=0.014 Score=60.28 Aligned_cols=181 Identities=10% Similarity=-0.024 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDY---MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~ 310 (651)
...++|++.++++.+. .| +..+|+.-..++...|+. +... ..++++++
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~--------------------------~~~~~eL~ 94 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESA--------------------------ALVKAELG 94 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHH--------------------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhh--------------------------hhHHHHHH
Confidence 3446778888888874 34 455666665555555440 0000 01234444
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc-CHHHHHHHHH
Q 006303 311 VYKNMQKLGVMADMASYNILLKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKE 387 (651)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~ 387 (651)
.++.+.+.. +-+..+|..-..++.+.+ +++++.+.++++.+. -+-+...|+.-...+.+.| .++++++.++
T Consensus 95 ~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~-----d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 95 FLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh-----ccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 444444432 336667777777777778 668888888888874 2456777887777777788 8888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 006303 388 DMLSAGVTPNTITWSSLINACANA--------------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (651)
++++..+. |...|+.....+.+. +.++++++.+++..... +-+...|...-..+.+.+..++
T Consensus 169 ~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 169 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp TTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 88877544 778888777776663 45789999999988875 4466677777777766666433
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0013 Score=50.82 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------H
Q 006303 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-------L 618 (651)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~ 618 (651)
++...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+. .|+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence 356678888899999999999999999998853 236788889999999999999999999999854 455 4
Q ss_pred HHHHHHHHHHHhcCCHHH
Q 006303 619 VTYITLLRARSRYGSLHE 636 (651)
Q Consensus 619 ~~~~~l~~~~~~~g~~~~ 636 (651)
..+..+..++...|+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHhHhh
Confidence 455555555555555443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.25 E-value=0.0041 Score=45.85 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (651)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555555666666666665555442 2244555555666666666666666666665543 22344444444444
Q ss_pred H
Q 006303 444 V 444 (651)
Q Consensus 444 ~ 444 (651)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.21 E-value=0.023 Score=45.96 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=85.5
Q ss_pred hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 006303 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQA 602 (651)
Q Consensus 527 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 602 (651)
++.++|...|++..+.|. |+.. |...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 478899999999999873 3444 7777888888999999999999864 77888888888988 8899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 006303 603 FSLFEEMKHYQIQPNLVTYITLLRARSR----YGSLHEVQQCLA 642 (651)
Q Consensus 603 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 642 (651)
.++|++..+.| +......+...|.. .++.++|.+.++
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 99999998875 56677778888888 788888766433
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.18 E-value=0.0029 Score=49.45 Aligned_cols=78 Identities=14% Similarity=-0.065 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
++..|++..+.. +.+...+..+...+...|++++|...|++.... .+.+...|..+..+|...|++++|...|+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555554432 235566666777777777777777777776653 13345566666777777777777777776
Q ss_pred HHHH
Q 006303 388 DMLS 391 (651)
Q Consensus 388 ~m~~ 391 (651)
+..+
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.17 E-value=0.00084 Score=66.36 Aligned_cols=95 Identities=7% Similarity=-0.136 Sum_probs=72.6
Q ss_pred ccCChHHHHHHHHHHHHhc---CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc---CCCccccccchhhH
Q 006303 83 KDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELFDGSGFK 156 (651)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~---~~~~~~~~~~~~~~ 156 (651)
..|++++|+.++++.++.. ..|++.. ...++++++..|..+|+|++|+.++++.++. -..|+ +..+..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~---Hp~~a~ 383 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVY---MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY---SLNVAS 383 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS---CHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchH---HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC---ChHHHH
Confidence 4589999999999998753 2333322 4778899999999999999999999998765 22232 334555
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 157 LLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 157 ~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
.+.+....|...|++++|+.+|++.++
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 666777788889999999999988764
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.16 E-value=0.0053 Score=45.20 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=65.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++..+... .+...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 3567778888899999999999999998874 234677888899999999999999999999887642 3566677
Q ss_pred HHHHHHHhc
Q 006303 403 SLINACANA 411 (651)
Q Consensus 403 ~ll~~~~~~ 411 (651)
.+..++.+.
T Consensus 82 ~l~~~~~~~ 90 (91)
T 1na3_A 82 NLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666544
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.15 E-value=0.0019 Score=52.96 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=68.4
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCH----------HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW----------QMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
+.+.+++|.+.++...++ -+.+...|..+..++...+++ ++|+..|++.++.... +...|..+.
T Consensus 14 r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 445667777777777764 244566777777777766654 5888888888876433 667788888
Q ss_pred HHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 406 NACANAG-----------LVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 406 ~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
.+|.+.| ++++|++.|++.++. .|+...|...+..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 8887764 788999999988886 5665555544443
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.11 E-value=0.0024 Score=49.94 Aligned_cols=80 Identities=18% Similarity=0.136 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (651)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 421 (651)
++.+.|++..+. .+.+...+..+...|...|++++|+..|++..... +.+...|..+..++...|++++|...|
T Consensus 3 ~a~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQ-----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 466777777653 24467788899999999999999999999998764 336778889999999999999999999
Q ss_pred HHHHHc
Q 006303 422 EEMLQA 427 (651)
Q Consensus 422 ~~~~~~ 427 (651)
++..+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.09 E-value=0.0015 Score=64.70 Aligned_cols=101 Identities=9% Similarity=-0.009 Sum_probs=76.4
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhc---CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc---CCCccccc
Q 006303 77 MASKLAKDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELF 150 (651)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~---~~~~~~~~ 150 (651)
.+..+...|++++|+.++++.++.. ..|++.. ...++++++..|..+|+|++|+.+++++++. -..|+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~---~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~--- 366 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY---QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS--- 366 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS---
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC---
Confidence 3455667899999999999998753 2333322 4778899999999999999999999998765 12222
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
+..+...+.+....|...|++++|+.++++.+.
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334555666777788889999999999988764
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.99 E-value=0.0022 Score=48.69 Aligned_cols=68 Identities=13% Similarity=-0.025 Sum_probs=56.9
Q ss_pred CCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 66 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
+|+. ...+..++..+...|++++|+..|+++++. .|+. ..++..++..+...|++++|+..|++..+.
T Consensus 3 ~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPED-PFTRYALAQEHLKHDNASRALALFEELVET--DPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3555 778899999999999999999999999998 6652 345667788899999999999999998873
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.98 E-value=0.0027 Score=48.10 Aligned_cols=67 Identities=9% Similarity=-0.017 Sum_probs=51.7
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
|.+..++..+...|.+.|++++|+..|++..+... .+..+|..+..+|...|++++|++.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44556777888888888888888888888887532 24667888888888888988888888877643
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.76 E-value=0.048 Score=51.61 Aligned_cols=163 Identities=15% Similarity=0.117 Sum_probs=91.0
Q ss_pred ChHHHHHHhhhCCCCCccHHHHHHHHh--hc---CCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHH
Q 006303 206 DVNLAIRYACIVPRADILFCNFVREFG--KK---RDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIY 279 (651)
Q Consensus 206 ~~~~A~~~~~~~~~~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 279 (651)
...+..+.....|.+..+|...+.+.. .. .+..+|+.+|++..+ ..|+ ...|..+..+|...
T Consensus 179 ~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~---------- 246 (372)
T 3ly7_A 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVR---------- 246 (372)
T ss_dssp CHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH----------
T ss_pred hHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH----------
Confidence 344445555666777777777665443 22 345788888998888 3454 34555444444300
Q ss_pred HHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 006303 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (651)
Q Consensus 280 ~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (651)
... .+. +...... ...+.+ .... ...+.++.+|..+...+...|++++|...++++..+
T Consensus 247 ~~~--~~~--~~~~~~~--------l~~a~~---a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L----- 306 (372)
T 3ly7_A 247 HSQ--HPL--DEKQLAA--------LNTEID---NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL----- 306 (372)
T ss_dssp HHH--SCC--CHHHHHH--------HHHHHH---HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hcc--CCC--chhhHHH--------HHHHHH---HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----
Confidence 000 000 0000000 011111 1111 112446667777666666668888888888877773
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
.|+...|..+...+.-.|++++|.+.|++.... .|...+|..
T Consensus 307 -n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 307 -EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 467777777777788888888888888777775 455555543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.61 E-value=0.025 Score=53.55 Aligned_cols=129 Identities=9% Similarity=-0.071 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhc----CCCh-H------HHHHHh---hh
Q 006303 153 SGFKLLKNECQRLLD--SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN----KPDV-N------LAIRYA---CI 216 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~-~------~A~~~~---~~ 216 (651)
..+..++++...+.+ .....+|+.+|++.++.. |+...++..+.-++.. .+.. . .+.+.. ..
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 356666665444332 456789999999999855 7776666665544431 0000 0 111111 11
Q ss_pred CCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
.|.+..++..+...+...|++++|+..++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 13444555555555555566666666666666632 55555555555666666666666666665554
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.46 E-value=0.029 Score=55.42 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=70.7
Q ss_pred hcCCHHHHHHHHHHHHhc-----CCC-Cc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCCh
Q 006303 233 KKRDLVSALRAYDASKKH-----LSS-PN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 305 (651)
..|++++|+.++++.++. |.. |+ ..+++.|..+|...|++++|+.++++...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 457889999999877653 211 22 45788999999999999999999887543
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 006303 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 354 (651)
+++.......+-...+++.|...|...|++++|+.+|++..++.
T Consensus 369 -----i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 369 -----PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp -----HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 33333322222235679999999999999999999999888754
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.39 E-value=0.048 Score=53.94 Aligned_cols=101 Identities=10% Similarity=-0.076 Sum_probs=68.8
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcC---CCC----cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 228 VREFGKKRDLVSALRAYDASKKHL---SSP----NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
+..+.++|++++|+..+++.++.. +.| ...+++.+..+|...|++++|+.++++...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~---------------- 357 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME---------------- 357 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----------------
Confidence 445566778888888887776531 112 134677777788888888888887776542
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 006303 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 354 (651)
+++...-...+....+++.|...|...|++++|..++++..++.
T Consensus 358 ----------i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 358 ----------PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp ----------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33333222222235678899999999999999999999887654
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.23 E-value=0.025 Score=41.90 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=52.4
Q ss_pred hhhhHHHHHhhhccCC---hHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcC
Q 006303 71 NDYYADMASKLAKDGR---LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~ 143 (651)
+..+..++.++...++ ..+|..+|++.++. +|+.. .++..++..+...|++++|+..|+++.+..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~------rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNE------AALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6777788887764444 79999999999998 88744 444556777999999999999999999853
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.10 E-value=0.026 Score=42.29 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHcccCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 371 KVFADAKWWQMALKVKEDMLSAGVTPNTI-TWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
..+...|++++|...|+++.+... .+.. .+..+..++...|++++|...|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555666666666666555421 2344 55556666666666666666666665553
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.06 E-value=0.12 Score=46.94 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=32.7
Q ss_pred ccHHHHHHHHhhc-----CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCc
Q 006303 222 ILFCNFVREFGKK-----RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQNVT 288 (651)
Q Consensus 222 ~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~ 288 (651)
.+|..|...|.+. |+.++|.+.|++.++....-+..++....+.++.. |+.+++.+.+++.......
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3455555555552 55555555555555522211244444445554442 5555555555555554443
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.00 E-value=0.17 Score=55.28 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 006303 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (651)
Q Consensus 260 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 339 (651)
..++..+.+.|.+++|.++.++- ....-+....|+++.|.++.+.+ .+...|..|...+.+.|+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~----------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ----------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH----------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCCCc----------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCC
Confidence 55556666667776666554311 11122333456777776664433 367788899999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419 (651)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 419 (651)
++.|++.|.++.. |..+...|...|+.+...++.+.....|. ++.-..+|.+.|++++|.+
T Consensus 697 ~~~A~~~y~~~~d-------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 697 FKLAIEAFTNAHD-------------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp HHHHHHHHHHHTC-------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHccC-------------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHH
Confidence 9999999987753 33444455556666666666555555431 2333344555667777766
Q ss_pred HHHHH
Q 006303 420 LFEEM 424 (651)
Q Consensus 420 ~~~~~ 424 (651)
++.++
T Consensus 758 ~~~~~ 762 (814)
T 3mkq_A 758 LLIKS 762 (814)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66554
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.55 Score=39.01 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=72.6
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 247 (651)
.|+++.|.++.+.+ ++...|..++......|+++.|.+.|.+..+ +..+.-.|.-.|+.+...++-+..
T Consensus 18 lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp TTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 79999999998875 3456799999999999999999999888753 555566677778887777666655
Q ss_pred HhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
...| -++.....+...|++++++++|.+.
T Consensus 87 ~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 87 QTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5433 2444455566678888888888654
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.21 Score=41.56 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=54.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
..|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|.-.|+.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHHHTCHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHHhCCHH
Confidence 346666666665554 3666666666666666666666666665432 334444455556655
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 423 (651)
....+-+.....|- ++.-..++.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444444331 33334444455666666666644
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.64 E-value=0.14 Score=46.43 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhcC-----CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-
Q 006303 528 DYYRVKALMNEMRTVGLSPN---HISWTILIDACGGS-----GNVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRS- 596 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~- 596 (651)
....|..++++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++. .| +..++..+...+++.
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhc
Confidence 356888888888884 565 56889999999984 9999999999999994 55 477888888888884
Q ss_pred CCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 006303 597 KRLKQAFSLFEEMKHYQIQ--PNLVTYITLL 625 (651)
Q Consensus 597 g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~ 625 (651)
|+.+++.+++++.++.... |+....+.+-
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 9999999999999987666 7655544443
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.63 E-value=0.041 Score=41.10 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHH-HHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
....+...|++++|.+.|+++.+. .+.+.. .+..+..+|...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455677788888888888888763 233556 78888888888888888888888888764
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.25 E-value=0.41 Score=52.14 Aligned_cols=98 Identities=8% Similarity=0.001 Sum_probs=51.5
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 247 (651)
.|++++|.++.+. .++...|..++..+.+.++++.|++.|..+.+ +..+...|...|+.+...++-+..
T Consensus 665 ~~~~~~A~~~~~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 665 VGQLTLARDLLTD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD----LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HTCHHHHHHHHTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 5777777766543 23445667777777777777777766655422 333444444455555544444443
Q ss_pred HhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
...| -++....+|.+.|++++|++++.++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3322 1222333344455555555555543
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.25 E-value=0.24 Score=40.01 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAF 603 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 603 (651)
...+.+-|.+....|. ++..+.-.+.+++++.+ +.+++..+|++..+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4456666676666655 68888888999999988 6679999999998864 24 3455666778899999999999
Q ss_pred HHHHHHHHCCCCCCHH
Q 006303 604 SLFEEMKHYQIQPNLV 619 (651)
Q Consensus 604 ~~~~~m~~~g~~p~~~ 619 (651)
++++.+.+ +.|+..
T Consensus 92 ~y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHHH--HCTTCH
T ss_pred HHHHHHHh--cCCCCH
Confidence 99999996 467543
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.21 E-value=0.23 Score=36.50 Aligned_cols=66 Identities=11% Similarity=-0.043 Sum_probs=40.0
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 322 ADMASYNILLKACCLAGN---TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
.|+..+..+..++...++ .++|..++++..+. -+-+......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-----dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-----EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455566666666554433 56677777766663 2334455666666666777777777777776655
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.47 E-value=5.5e-06 Score=79.39 Aligned_cols=235 Identities=11% Similarity=0.059 Sum_probs=143.9
Q ss_pred CCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH
Q 006303 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265 (651)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (651)
...+.+..|+.++++....+...+|..-|-+.. ++..|..++....+.|.+++-++.+....+.. .+..+=+.|+.+
T Consensus 49 ~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 49 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp SSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS-CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred HHhCCccHHHHHHHHHHccCchHHHHHHHHhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 346677889999999999999999988776653 45678889999999999999999988777653 344555688999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh-hc-CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 006303 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343 (651)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 343 (651)
|++.++..+..+++. .|+..-...+-.- +. |.++.|.-+|.. ..-|..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~---------isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN---------VSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGG---------SCCCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHh---------CccHHHHHHHHHHHHHHHHH
Confidence 999998755444332 1221111111111 11 222222222221 12234445555566666655
Q ss_pred HHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (651)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 423 (651)
.+.-++ .-++.+|..+..+|...+.+.-|..+--.++-. + .-...++..|.+.|.+++-+.+++.
T Consensus 190 VdaArK----------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 190 VDGARK----------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp TTTTTT----------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHh----------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 543321 236667888888888887776665544333321 1 1123456667778888887777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006303 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 424 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
-.... .....+|+-|.-.|+|- ++++..+.+
T Consensus 255 glglE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 255 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp HTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred HhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 66332 45666777777777663 444444444
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.45 E-value=0.22 Score=40.23 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=62.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccC---ChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDG---RLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGV 135 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~ 135 (651)
+.+....++ .+..+.-.+..++.+.+ ++++++.+|+.+.+.. .|.. ..+.+..+...+.+.|++++|...
T Consensus 21 y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~-----~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 21 FQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEE-----QRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHH-----HHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Cccc-----hHHHHHHHHHHHHHccCHHHHHHH
Confidence 333344444 34788888889999887 7779999999999983 2631 266778889999999999999999
Q ss_pred HHHHHHcCCCccc
Q 006303 136 LKKLNELGVAPLE 148 (651)
Q Consensus 136 l~~~~~~~~~~~~ 148 (651)
++.+++ ++|+.
T Consensus 94 ~~~lL~--ieP~n 104 (152)
T 1pc2_A 94 VRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHH--HCTTC
T ss_pred HHHHHh--cCCCC
Confidence 999999 56744
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.41 E-value=0.6 Score=35.12 Aligned_cols=70 Identities=10% Similarity=-0.054 Sum_probs=41.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC--ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV--LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
+..-+..+...+.+.|++..|...|+...+...... -.....++..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 444555667777777777777777777665432210 0123455666666666666666666666666654
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.27 E-value=0.29 Score=39.94 Aligned_cols=73 Identities=8% Similarity=0.051 Sum_probs=54.9
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhc-CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
+.+.+..-+..+...|.++.|+.+.+.++... .+|+..+.-....++...+.++..+|++.+|...|++.+..
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 35677777888889999999999999877652 23443333344667778888999999999999999998663
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.25 E-value=0.5 Score=35.56 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG------VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
.+...+..|...+.+.|+++.|...|+...+.- -.+....+..+..++.+.|+++.|..+++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 466677788999999999999999998887531 12356778889999999999999999999998763
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.32 E-value=1.2 Score=43.19 Aligned_cols=127 Identities=7% Similarity=-0.060 Sum_probs=78.8
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC--CCccccchHHHHHHHHhcCCChHHHHH-HhhhCCCCCccHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--LPVKELDEEFRIVQLCVNKPDVNLAIR-YACIVPRADILFCN 226 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~ 226 (651)
.+...|..++.........|+.+.|...+++++..- ....+.. ...+..+.+ .++.. -..+...
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~--~~~a~~~ 176 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVED--KVLAHTA 176 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHH--HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHH--HHHHHHH
Confidence 344445555554444444678888888888887642 1111110 001111100 00000 0023445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCccc
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLN 290 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~~~ 290 (651)
++..+...|++++++..+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7788889999999999998887743 24788999999999999999999999998754 255554
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.15 E-value=2.2 Score=34.14 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=77.6
Q ss_pred CCHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHhhhcCCccccHH-HHHHHHH------HHHcccCHHHHHHHHHH
Q 006303 322 ADMASYNILLKACCLAGNT------VLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVK------VFADAKWWQMALKVKED 388 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~ 388 (651)
-|..+|-..+...-+.|+. +...++|++.... ++|+.. .|...+. .+...++.++|.++|+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-----~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-----LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-----SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-----CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4677787777777777887 7888888887763 555532 1222222 12345889999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 389 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
++..+-. =...|......-.+.|+...|.+++...+..+.+| ...+...+.
T Consensus 86 a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 86 ARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 9765322 26777777777789999999999999999876443 334444443
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.73 E-value=4.6 Score=39.90 Aligned_cols=163 Identities=12% Similarity=0.157 Sum_probs=82.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhc--CCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCcccH----
Q 006303 225 CNFVREFGKKRDLVSALRAYDASKKH--LSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRS----QNVTLNI---- 291 (651)
Q Consensus 225 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~g~~~~~---- 291 (651)
..|...|...|++.+|.+++.++... |.... ...+...++.|...+++..|..++..... ....|+.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44667777777777777777776532 11111 34566667777777777777777776532 2222221
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHhHHHHHH----HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH
Q 006303 292 YVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLK----ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (651)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (651)
..+...+....+++.+|-+.|.+.... ....|...+..++. ...-.+....-..+...... .. .-++...|
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~---~~-~~~~l~~~ 296 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQN---DN-NLKKLESQ 296 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHH---HS-SCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhh---cc-cccccHHH
Confidence 122333333446777666666555331 11112222222111 11111111111222222221 11 23567778
Q ss_pred HHHHHHHHc--ccCHHHHHHHHHHHHH
Q 006303 367 STIVKVFAD--AKWWQMALKVKEDMLS 391 (651)
Q Consensus 367 ~~l~~~~~~--~~~~~~a~~~~~~m~~ 391 (651)
..++.+|.. ..+++.+...|.....
T Consensus 297 ~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 297 ESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 888888865 3678888887776554
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.51 E-value=3 Score=32.52 Aligned_cols=139 Identities=12% Similarity=-0.030 Sum_probs=86.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHH
Q 006303 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (651)
-.|.+++..++..+.... .+..-||.++--....-+=+-..++++..-+. -|. ..++++.....-+
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi--------s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL--------DKCQNLKSVVECG 84 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG--------GGCSCTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc--------HhhhcHHHHHHHH
Confidence 457788888888777662 35556666665554444444444444443221 111 1234444444444
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 313 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
-.+- .+..-+...++.+...|+.++-.+++..+.. ..+|++...-.+..+|.+.|+..++.+++.+..+.
T Consensus 85 ~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-----n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 85 VINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-----NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-----cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4332 3555666777778888888888887777422 14677777788888888888888888888888887
Q ss_pred CCC
Q 006303 393 GVT 395 (651)
Q Consensus 393 ~~~ 395 (651)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 754
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.78 E-value=1.5 Score=34.00 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG---ALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAF 603 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 603 (651)
...+.+-|......|. ++..+--.+.+++.+..+... ++.+++++.+.+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3455555555555454 677777788999999887665 899999988753 23 2334446677899999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 006303 604 SLFEEMKHYQIQPNL 618 (651)
Q Consensus 604 ~~~~~m~~~g~~p~~ 618 (651)
++++.+.+. .|+-
T Consensus 95 ~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHHh--CCCC
Confidence 999999864 5654
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.08 E-value=3.6 Score=39.81 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 006303 551 WTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-----HYQIQPNLVTYITLL 625 (651)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l~ 625 (651)
...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+++. +.|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4456778888999999999999887743 3478899999999999999999999999875 469999998765544
Q ss_pred HHH
Q 006303 626 RAR 628 (651)
Q Consensus 626 ~~~ 628 (651)
..+
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.63 E-value=7.8 Score=43.79 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=119.1
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 302 (651)
....++..+...+.++.+.++..-. +.+....-.+..+|...|++++|.+.|.+.-. |+..+....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~-------- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF-------- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC--------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh--------
Confidence 3445677777888887777654332 23444445567778889999999999976522 221110000
Q ss_pred CChHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 303 HDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
.. ..-+..+..... ..-..=|..++..+.+.+.++.+.+.-....+....+........|..+.+.+...|+++
T Consensus 880 ~~----~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 880 AV----LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp SS----HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred hh----hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence 00 001111211110 112234666777777888888888777666553211100011225778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHH-c-CCCCCHHHHHHHHHHHHhc
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLV------------EQAMHLFEEMLQ-A-GCEPNSQCCNILLQACVEA 446 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~------------~~a~~~~~~~~~-~-~~~~~~~~~~~ll~~~~~~ 446 (651)
+|...+-.+..... -......++..+|..|.. +++.+++....+ . .+...+.-|..|-.-+...
T Consensus 956 ~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r 1033 (1139)
T 4fhn_B 956 AAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKH 1033 (1139)
T ss_dssp GGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhcc
Confidence 88888877766533 344566666666655543 344444443221 1 1122223355555555667
Q ss_pred CChhHH-HHHHHHhh
Q 006303 447 CQFDRA-FRLFRSWT 460 (651)
Q Consensus 447 g~~~~a-~~~~~~~~ 460 (651)
|++.+| .-+|+.+.
T Consensus 1034 ~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 1034 QNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HTTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 777655 44555543
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.21 E-value=7.4 Score=31.15 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=36.2
Q ss_pred hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIK 591 (651)
Q Consensus 527 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (651)
++.++|.++|+.++..+-. -..+|.....--.+.|+++.|.+++.+.+..+.+ +...++..+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 4666777777776554222 2555555555556677777777777777665544 3333444333
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.52 E-value=3.5 Score=43.44 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=42.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 006303 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (651)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 389 (651)
.+.+...|+++.|.++-++.... .+.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-----aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-----ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-----CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34456778899999988888773 3444668999999999999999998887776
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.79 E-value=5.9 Score=41.75 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=80.2
Q ss_pred hhhHHHHHhhhccCC-hHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhh-cChhHHHHHHHHHHHc------C
Q 006303 72 DYYADMASKLAKDGR-LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIRE-GRIDCVVGVLKKLNEL------G 143 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~l~~~~~~------~ 143 (651)
.....++..+...|+ .+.|+.+|+++... +|..-.. .. ..++...... .+--+|+.++.+.++. .
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~--~~---~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIY--YK---TAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHH--HH---HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHH--HH---HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 344556666666677 47799999999888 6642110 00 1111111111 2333555555555431 1
Q ss_pred CCccccc----cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC
Q 006303 144 VAPLELF----DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (651)
Q Consensus 144 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 219 (651)
..+.... ......+|.--+.-+.+.|+++.|+++-++.+... |.++..|..|...|...|+++.|+-.+...|-
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 2222110 01111222222233445788999999988887744 88888888888888888888888888777763
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.70 E-value=7.6 Score=28.44 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+-++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555544
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.67 E-value=9.9 Score=29.74 Aligned_cols=141 Identities=9% Similarity=0.046 Sum_probs=96.1
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
..-.|..++..++..+..... +-. -++.++ +...+.-+-+-..++++.+-..- . ..
T Consensus 17 ~ildG~v~qGveii~k~~~ss--ni~-----E~NW~I---CNiiD~a~C~y~v~vLd~IGkiF-D-------------is 72 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS--TKS-----EYNWFI---CNLLESIDCRYMFQVLDKIGSYF-D-------------LD 72 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CHH-----HHTHHH---HHHHHHCCHHHHHHHHHHHGGGS-C-------------GG
T ss_pred HHHhhhHHHHHHHHHHHcCCC--Ccc-----ccceee---eecchhhchhHHHHHHHHHhhhc-C-------------cH
Confidence 345778888888888877632 111 122222 12222344455566666653321 1 12
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
..++.......+-.+....+.....++.+..+|+-++-.+++.++.. +.+|++...-.+..+|.+.|+..++.+++.+.
T Consensus 73 ~C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp GCSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 35566666666666666667778888999999999999999999654 24578888999999999999999999999999
Q ss_pred HhCCCc
Q 006303 283 RSQNVT 288 (651)
Q Consensus 283 ~~~g~~ 288 (651)
.+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 999875
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.66 E-value=5.8 Score=29.05 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=54.3
Q ss_pred HHHHhcCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 555 IDACGGSG-NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (651)
Q Consensus 555 i~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 628 (651)
...|.+.. +.=+..+-++.+....+.|++....+.+++|.|.+++..|.++|+-.+.. +.+...+|..+++-+
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 33343444 45567777788888889999999999999999999999999999988743 233345677777643
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.19 E-value=5 Score=31.08 Aligned_cols=84 Identities=10% Similarity=-0.009 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 006303 562 GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQ---AFSLFEEMKHYQIQP--NLVTYITLLRARSRYGSLHE 636 (651)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~ 636 (651)
..+..+.+-+.+....|. ++..+--.+..++.+..+... ++.++++..+.+ .| .......+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344556666666655443 788888888899999887665 889999987653 24 44566677779999999999
Q ss_pred HHHHHHHHHHH
Q 006303 637 VQQCLAVYQDM 647 (651)
Q Consensus 637 a~~~~~~~~~m 647 (651)
|.+..+.+-++
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99977766554
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.94 E-value=6 Score=32.30 Aligned_cols=124 Identities=12% Similarity=0.055 Sum_probs=64.4
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHc-CCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCC-ccccchHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNEL-GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEF 195 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 195 (651)
.-+..+...|.++.|+-+.+.+... +..|+...-..-+..+......+...+++..|...|++.++.... ++......
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3456677889999999888886664 223332222233444444444566689999999999987643211 11111000
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 006303 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 249 (651)
.+.. ....+. . +. .+.+.++..-+..+|.+.+++++|+.+++.+..
T Consensus 105 ~~~~---~ss~p~---s-~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STGN---SASTPQ---S-QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccc---cCCCcc---c-cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0000 000000 0 00 112224555577777777777777777766543
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.45 E-value=23 Score=39.92 Aligned_cols=193 Identities=7% Similarity=-0.028 Sum_probs=104.6
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcC--------------------C-
Q 006303 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL--------------------S- 252 (651)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------~- 252 (651)
...++..+...+.++.+..+....+.++.....++.+|...|++++|.+.|.+....- .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 3445556666677777777766666666555666777777777777777776432100 0
Q ss_pred -CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc----HHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHH
Q 006303 253 -SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN----IYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMA 325 (651)
Q Consensus 253 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~ 325 (651)
..-..-|..++..+.+.+.++.+.++-....+....-+ ...|..+++... +++++|...+-.+..... -..
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~ 972 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKS 972 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHH
Confidence 00123466677777777777777766665554322111 124555555433 677777666666655432 234
Q ss_pred hHHHHHHHHHh------------cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH-HHHHHHHH
Q 006303 326 SYNILLKACCL------------AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA-LKVKEDML 390 (651)
Q Consensus 326 ~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~ 390 (651)
.+..|+..+|. .|..++..+++..-.+.... .......|..|=.-+...|++..| .-+|+.+.
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~--~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMIN--VESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCc--cccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 45555554443 25567777776544321100 122233455555555666776544 33444443
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.29 E-value=8.9 Score=27.92 Aligned_cols=87 Identities=7% Similarity=-0.100 Sum_probs=57.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHH
Q 006303 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (651)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (651)
....++|..+-+-+...+. ...+--+-+..+...|+|++|..+.+.+. .||...|-++-....|-.+.+..-+.
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRLN 93 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHH
Confidence 3455666666666555322 12222222334667899999988877665 78999999988888888888888887
Q ss_pred HHHHCCCCCCHHhH
Q 006303 314 NMQKLGVMADMASY 327 (651)
Q Consensus 314 ~m~~~~~~~~~~~~ 327 (651)
++..+|. |....|
T Consensus 94 ~la~sg~-p~~q~F 106 (116)
T 2p58_C 94 RLARSQD-PRIQTF 106 (116)
T ss_dssp HHTTCCC-HHHHHH
T ss_pred HHHhCCC-HHHHHH
Confidence 8877663 344444
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.86 E-value=8.5 Score=27.99 Aligned_cols=86 Identities=9% Similarity=-0.111 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (651)
...++|..+-+-+...+. ...+--+-+..+...|+|++|..+.+.+. .||...|-++-....|-.+.+..-+.+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 455666666666555322 12222222334667899999988776554 789999999888888888888888878
Q ss_pred HHHCCCCCCHHhH
Q 006303 315 MQKLGVMADMASY 327 (651)
Q Consensus 315 m~~~~~~~~~~~~ 327 (651)
+..+|. |....|
T Consensus 94 la~sg~-p~~q~F 105 (115)
T 2uwj_G 94 LGGSSD-PALADF 105 (115)
T ss_dssp HHTCSS-HHHHHH
T ss_pred HHhCCC-HHHHHH
Confidence 877763 344444
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.53 E-value=49 Score=35.83 Aligned_cols=271 Identities=9% Similarity=-0.040 Sum_probs=131.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh--cCC-ccccHHHHHHHHHHHHcc
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADM--ASYNILLKACCLAGNTVLAQEIYGEVKHLEA--KGV-LKLDVFTYSTIVKVFADA 376 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~ 376 (651)
.++.++++.+++.....+-..+. ..-..+.-+....|..+++..++........ .|. -.+....-.++.-+++-.
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 35666666666655432101122 2222233344555655566666665543110 000 001111222333333333
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCh
Q 006303 377 KW-WQMALKVKEDMLSAGVTPNTIT--WS--SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQF 449 (651)
Q Consensus 377 ~~-~~~a~~~~~~m~~~~~~~~~~~--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~ 449 (651)
|. -+++...+..++... +... .. .|...+.-.|+.+....++..+.+. .+..+...+.-+ +...|+.
T Consensus 467 GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 467 GSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp TCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCG
T ss_pred CCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCCh
Confidence 32 245556666555432 2211 12 2333344567777777777766653 233333333333 3356788
Q ss_pred hHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHH--HHhh
Q 006303 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCT 527 (651)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~ 527 (651)
+.+..+++.+.... .|....-..+.. +|++
T Consensus 541 e~~~~li~~L~~~~------------------------------------------------dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 541 ELADDLITKMLASD------------------------------------------------ESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp GGGHHHHHHHHHCS------------------------------------------------CHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCC------------------------------------------------CHHHHHHHHHHHHHHhcC
Confidence 88877777665421 233322223333 3444
Q ss_pred --cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 006303 528 --DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL-KQAFS 604 (651)
Q Consensus 528 --~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~ 604 (651)
+.....++++.+... ...+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++..
T Consensus 573 TGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 555666688888764 22233333334445555777777777777666643 34444333444444445443 57788
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 605 LFEEMKHYQIQPNLVTYITLLRARSRY 631 (651)
Q Consensus 605 ~~~~m~~~g~~p~~~~~~~l~~~~~~~ 631 (651)
++..+.. .+|..+-...+.++...
T Consensus 651 ~L~~L~~---D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 651 VLDPLTK---DPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHcc---CCCHHHHHHHHHHHHHH
Confidence 8888863 35555554444444433
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.32 E-value=4.7 Score=31.45 Aligned_cols=75 Identities=12% Similarity=-0.034 Sum_probs=57.1
Q ss_pred CCccchhhhHHHHHhhhccCC---hHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 66 DLSSRNDYYADMASKLAKDGR---LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 66 ~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
.+.+++.+--.++.++.+... ...++.+++.+.+. .|.. ..+-+..++.++.+.|++++|....+.+++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~-----~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~- 106 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESR-----RRECLYYLTIGCYKLGEYSMAKRYVDTLFE- 106 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGG-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--Ccch-----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 355566777777777776644 45789999999987 4532 256667888899999999999999999998
Q ss_pred CCCcccc
Q 006303 143 GVAPLEL 149 (651)
Q Consensus 143 ~~~~~~~ 149 (651)
+.|+..
T Consensus 107 -~eP~N~ 112 (134)
T 3o48_A 107 -HERNNK 112 (134)
T ss_dssp -TCTTCH
T ss_pred -hCCCCH
Confidence 677553
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.24 E-value=13 Score=28.93 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 566 GALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 566 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
+..+-++.+...++.|++......+++|-+.+|+..|.++|+-.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444445555555555555566655666655655555554
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.52 E-value=12 Score=29.13 Aligned_cols=75 Identities=11% Similarity=-0.074 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 544 LSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620 (651)
Q Consensus 544 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 620 (651)
-.|+..+--.+.+++.+..+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+ +.|+-.-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 34667776667788877765 457888999888754212345566777899999999999999999985 4676543
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.49 E-value=18 Score=28.10 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
|.=+..+-++.+...++.|+.......+++|.+.+++..|.++|+-++..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 334556667777777889999999999999999999999999999887652 333445666554
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.10 E-value=15 Score=26.82 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (651)
..++|..|-+.+...+. ...+--+=+..+...|+|++|..+.+.+. .||...|-+|-. ++.|-.+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 56788888877777543 22222222345677888888887766554 688888766543 47788788777777
Q ss_pred HHHHCCCCCCHHHH
Q 006303 608 EMKHYQIQPNLVTY 621 (651)
Q Consensus 608 ~m~~~g~~p~~~~~ 621 (651)
++...| .|....|
T Consensus 94 ~la~sg-~p~~q~F 106 (116)
T 2p58_C 94 RLARSQ-DPRIQTF 106 (116)
T ss_dssp HHTTCC-CHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 776554 4444443
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.40 E-value=16 Score=28.82 Aligned_cols=72 Identities=13% Similarity=-0.016 Sum_probs=55.5
Q ss_pred ccchhhhHHHHHhhhccCC---hHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCC
Q 006303 68 SSRNDYYADMASKLAKDGR---LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (651)
Q Consensus 68 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~ 144 (651)
.++..+--.++.++.+... ..+++.+++.+.+. .|.. ..+-+..++..+.+.|++++|....+.+++ +
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~-----~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESR-----RRECLYYLTIGCYKLGEYSMAKRYVDTLFE--H 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCST-----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--T
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--Cccc-----hhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--c
Confidence 3456777777777777654 45789999999987 4421 256667888899999999999999999999 6
Q ss_pred Cccc
Q 006303 145 APLE 148 (651)
Q Consensus 145 ~~~~ 148 (651)
.|+.
T Consensus 107 eP~n 110 (144)
T 1y8m_A 107 ERNN 110 (144)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7754
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.11 E-value=9.8 Score=37.36 Aligned_cols=104 Identities=7% Similarity=-0.087 Sum_probs=70.6
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcC-CCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG-VAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~-~~~~~~ 149 (651)
......++..+.+.|++++|.+.|.++......+.. ..+.+-.+++.+...+++..|...++++...- -.++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-----kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-- 203 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-----KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-- 203 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC--
Confidence 446788999999999999999999999887655443 25667778888999999999999999986641 1111
Q ss_pred ccchhhHH-HHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 150 FDGSGFKL-LKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 150 ~~~~~~~~-l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
+..... -...+..+...+++..|...|-+...
T Consensus 204 --~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 204 --WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp --THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 111111 11122233446778888777766543
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.59 E-value=6.4 Score=35.12 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=48.3
Q ss_pred HhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccc
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~ 148 (651)
..+.+.|++.+|++....-++. .|.. ...-..++..+|-.|+|++|..-++...+ ..|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~d------a~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKD------ASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchh
Confidence 4567889999999999999998 7773 33444567889999999999999999988 45543
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.39 E-value=18 Score=35.37 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=64.9
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCcccH----H
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ---NVTLNI----Y 292 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~~~~~----~ 292 (651)
.+...++..|.+.|+++.|.+.|.++...-.. .-...+-..++.+...+++..+...+.+.... +..++. .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46677889999999999999999988874332 23567788888899999999998888886532 222222 2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHH
Q 006303 293 VFNSLMNVNAHDLKFTLEVYKNMQK 317 (651)
Q Consensus 293 ~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (651)
.+..++....+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2333333344666666666655433
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.21 E-value=14 Score=26.83 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (651)
..++|..|-+.+...+. ...+--+=+..+...|+|++|..+.+.+. .||...|-+|-. ++.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 56778888777776543 22222222345677888888887765554 678877766543 47788788777777
Q ss_pred HHHHCCCCCCHHHH
Q 006303 608 EMKHYQIQPNLVTY 621 (651)
Q Consensus 608 ~m~~~g~~p~~~~~ 621 (651)
++...| .|....|
T Consensus 93 ~la~sg-~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSS-DPALADF 105 (115)
T ss_dssp HHHTCS-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 776554 4444443
No 260
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=74.11 E-value=0.11 Score=50.47 Aligned_cols=205 Identities=10% Similarity=0.035 Sum_probs=121.4
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
.+..|..|+.+..+.|+..+|++-|-+. .+|+.| ..++....+.|.+++-+..|.-..+.--.| .
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y---------~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~ 117 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSY---------MEVVQAANTSGNWEELVKYLQMARKKARES--Y 117 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSS---------SHHHHHTTTSSCCTTHHHHHHTTSTTCCST--T
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC----CChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhccc--c
Confidence 4778899999999999999998866532 256654 344566778999999988887555432222 2
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC----------
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR---------- 219 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------- 219 (651)
.++. |+- .|++.++..+-.++ +..++......++.-|-..|.++.|.-+|..++.
T Consensus 118 IDte----Li~---ayAk~~rL~elEef--------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~ 182 (624)
T 3lvg_A 118 VETE----LIF---ALAKTNRLAELEEF--------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH 182 (624)
T ss_dssp TTHH----HHH---HHHTSCSSSTTTST--------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSS
T ss_pred cHHH----HHH---HHHhhCcHHHHHHH--------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHH
Confidence 2222 333 33335554332222 1233445567788888888888888887776532
Q ss_pred ---------------CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 220 ---------------ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 220 ---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
+..+|-.+-.+|...+.+..|.-.--.+.-. ++ -...++..|...|-+++.+.+++.-..
T Consensus 183 L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 183 LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp CSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 3366666666666666666665554444422 11 223345556677777777777776542
Q ss_pred CCCcccHHHHHHHHHhhcC-ChHHHHH
Q 006303 285 QNVTLNIYVFNSLMNVNAH-DLKFTLE 310 (651)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~-~~~~a~~ 310 (651)
. -....-+|+.|--.|++ ++++..+
T Consensus 258 l-ErAHmGmFTELaILYsKY~PeKlmE 283 (624)
T 3lvg_A 258 L-ERAHMGMFTELAILYSKFKPQKMRE 283 (624)
T ss_dssp S-TTCCHHHHHHHHHHHHSSCTTHHHH
T ss_pred C-CchhHHHHHHHHHHHHhcCHHHHHH
Confidence 1 11344455555555554 3444333
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.08 E-value=85 Score=32.35 Aligned_cols=112 Identities=8% Similarity=-0.018 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHHcC-CCCcHH--HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 528 DYYRVKALMNEMRTVG-LSPNHI--SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~-~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 604 (651)
+.+.|..++....+.. +.+... .+..+...+...+...++...+...... ..+.....-.+....+.|+++.|.+
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 6778888887776432 222111 2233333344445355666666665543 2333333334444456788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 605 LFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 605 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
.|+.|..... ....-..-+.+++...|+.++|..+++
T Consensus 307 ~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~ 343 (618)
T 1qsa_A 307 WLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILH 343 (618)
T ss_dssp HHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888854221 233434556667778888888777443
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=73.72 E-value=32 Score=27.24 Aligned_cols=73 Identities=11% Similarity=-0.066 Sum_probs=52.1
Q ss_pred CCcHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006303 545 SPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (651)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (651)
.|+..+--.+.+++.+..+ ..+++.+++++...+..-.....-.+.-++.+.|++++|.++.+.+.+. .|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 5677777777788887765 4568888888877432223334445667899999999999999999864 67543
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.68 E-value=86 Score=32.28 Aligned_cols=250 Identities=9% Similarity=-0.007 Sum_probs=139.4
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH--
Q 006303 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM-- 273 (651)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-- 273 (651)
.-...+.+.+++..-..++...|.+...-+....+....|+-.+|......+-..|. .....+..++..+.+.|...
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~ 155 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPL 155 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHH
Confidence 345566678888888888777566666777788888888998888887777766553 34556777777777666532
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHhh--------------cCChHHHHHHHHHHHHCCCCCCHHh---HHHHHHHHHh
Q 006303 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVN--------------AHDLKFTLEVYKNMQKLGVMADMAS---YNILLKACCL 336 (651)
Q Consensus 274 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~--------------~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~ 336 (651)
....-++.+...|- ...-..+.... .++...+...... ..++... +..-+.-+.+
T Consensus 156 ~~~~R~~~al~~~~---~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 156 AYLERIRLAMKAGN---TGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh
Confidence 23333333333331 11111111111 1112222211111 1122221 1122233333
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCccccHH--HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006303 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVF--TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (651)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 414 (651)
.+.+.|...+...... ..+.+... .+..+...+...+...++...+....... .+.......+....+.|++
T Consensus 228 -~d~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQA---QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp -HCHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCH
T ss_pred -cCHHHHHHHHHhhhhc---cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCH
Confidence 3778888888877642 11222211 23333444445553445555555554432 3444444555555677999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
+.|...|+.|..... ......--+..++...|+.++|..+|+.+..
T Consensus 302 ~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999988865321 2333344566677888999999999988764
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.86 E-value=76 Score=30.42 Aligned_cols=88 Identities=11% Similarity=-0.045 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHH
Q 006303 552 TILIDACGGSGNVEGALQILKIMRED--GMSPD---VVAYTTAIKVCVRSKRLKQAFSLFEEMKH--YQIQPNLVTYITL 624 (651)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~l 624 (651)
.-++..|...|++.+|.+++.++.+. ..... ...|-.-+..|...|++.++..++..... ..+.+++.....+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 46788999999999999999998773 22111 23455567788999999999999988863 2333444433222
Q ss_pred ----HHHHH-hcCCHHHHHH
Q 006303 625 ----LRARS-RYGSLHEVQQ 639 (651)
Q Consensus 625 ----~~~~~-~~g~~~~a~~ 639 (651)
...+. ..++++.|..
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~ 202 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFS 202 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHH
Confidence 12344 6788877644
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.23 E-value=1e+02 Score=30.17 Aligned_cols=156 Identities=8% Similarity=0.092 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHHC--CCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc--HHHHHHHHHHHHc
Q 006303 303 HDLKFTLEVYKNMQKL--GVMAD---MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFAD 375 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~--~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 375 (651)
|++.+|..++..+... |.... ...+...++.|...+++..|..++..+.........+|+ ...+..++..+..
T Consensus 151 g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~ 230 (445)
T 4b4t_P 151 GKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLH 230 (445)
T ss_dssp TCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHH
Confidence 7888888888877542 21111 345666778888999999999988887532212211222 2356777788888
Q ss_pred ccCHHHHHHHHHHHHHC-CCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CC
Q 006303 376 AKWWQMALKVKEDMLSA-GVTPNTITWSSL----INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA--CQ 448 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~ 448 (651)
.++|.+|-..|.++... ...-|...+..+ +.+..-.+....-..++.........++...|..++.+|... .+
T Consensus 231 e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~ 310 (445)
T 4b4t_P 231 KREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMR 310 (445)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSS
T ss_pred hhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhh
Confidence 89999988888777542 111132222211 111111221122222233333322235566788888888653 34
Q ss_pred hhHHHHHHHH
Q 006303 449 FDRAFRLFRS 458 (651)
Q Consensus 449 ~~~a~~~~~~ 458 (651)
++...+.|..
T Consensus 311 ~~~~~~~~~~ 320 (445)
T 4b4t_P 311 WPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHTCS
T ss_pred hHHHHHHHHH
Confidence 5555555543
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.15 E-value=32 Score=30.69 Aligned_cols=70 Identities=13% Similarity=0.080 Sum_probs=48.1
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--ccHHHHHHHHH
Q 006303 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMN 299 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~ll~ 299 (651)
..+.+.|++++++.....-++.. +-|...-..|+..++-.|+|++|..-++...+.... |-...|..+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 34567788888888877766643 247777788888888889999988888877665322 23334444444
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.04 E-value=98 Score=29.15 Aligned_cols=77 Identities=6% Similarity=0.068 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL--VEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
..+.++.=|...|+.++|.+.++++..-.+. .......+..++-+.++ .+...+++..+.+.|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577888899999999999999988632222 23445555556555443 46688888888887765554444444333
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.38 E-value=54 Score=27.75 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=51.7
Q ss_pred ccccHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 359 LKLDVFTYSTIVKVFA--DAKWWQMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
.+-|..-....+.--- ..+...+..++|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4455554333332221 2445778899999998776543 455677888888899999999999999998877773
No 269
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.19 E-value=59 Score=25.22 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCcccHHH
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYV 293 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~ 293 (651)
...++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 45678888889999999999998863111 123345555556655542 4567778888877766544333
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.13 E-value=1.1e+02 Score=28.02 Aligned_cols=26 Identities=19% Similarity=-0.077 Sum_probs=18.9
Q ss_pred ccchHHHHHHHHhcCCChHHHHHHhh
Q 006303 190 ELDEEFRIVQLCVNKPDVNLAIRYAC 215 (651)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (651)
++..+..++..|.+.+++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 44567777778888888888777665
No 271
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.85 E-value=33 Score=31.59 Aligned_cols=69 Identities=9% Similarity=0.127 Sum_probs=44.4
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHH
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL--VEQAMHLFEEMLQAGCEPNSQC 435 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~ 435 (651)
.+.++.=|...|+.++|.+.++++..-.+. .......+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456788888899999999999888532111 23344445555555433 4667788888887775544443
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.80 E-value=1e+02 Score=26.09 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC
Q 006303 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (651)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 396 (651)
.+...++.++|..|.. .|.-.--...|......+...|++++|..+|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~---~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFN---KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHH---HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446677777777775 33223445567777777778888888888888877776665
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=53.60 E-value=1.4e+02 Score=27.71 Aligned_cols=185 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHhhhccCCh---HHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc----CCCccccc
Q 006303 78 ASKLAKDGRL---EEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL----GVAPLELF 150 (651)
Q Consensus 78 ~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~----~~~~~~~~ 150 (651)
+......|++ =+|.+.++.+...-+....|.. ..+.+...+..+.+.|+..-+.++.--+++. ++.++..
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~e--AidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~- 95 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAA--AVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGA- 95 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH-
T ss_pred HHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHH--HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-
Q ss_pred cchhhHHHHHHHHHHhhc--chHHHHHHHHHHHHhcC-CCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCC--ccHH
Q 006303 151 DGSGFKLLKNECQRLLDS--GEVEMFVGLMEVLEEFR-LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--ILFC 225 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 225 (651)
...-++.....+-.. .+..-..+.+.+-.+.+ .+--++..+..++..|.+.+++.+|+..|-.-.++. ...+
T Consensus 96 ---~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~ 172 (336)
T 3lpz_A 96 ---SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLAR 172 (336)
T ss_dssp ---HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHH
T ss_pred ---HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHH
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
.+.+.+...+.-+.-+-+.+.+.. |.-.++...|..+|+.+.+
T Consensus 173 mL~ew~~~~~~~e~dlfiaRaVL~----------------yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 173 MEYEWYKQDESHTAPLYCARAVLP----------------YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTSCGGGHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHH----------------HHHhCCHHHHHHHHHHHHH
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.53 E-value=1.6e+02 Score=28.22 Aligned_cols=135 Identities=10% Similarity=0.014 Sum_probs=83.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCCCCHHHH---
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITW--- 401 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~--- 401 (651)
....|...|.+.|+.++..+++......-..=.-.-.......++..+.... ..+.-.++.....+..- -+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4556888888999988888888766542110000112334566777776533 33333344333332110 011223
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 402 ---SSLINACANAGLVEQAMHLFEEMLQAGCEP-----NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 402 ---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
..++..|...|++.+|.+++.++.+.--+. -..++..-+..|...+++.++...+.....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 267888999999999999999887741111 123466667788899999999999987654
No 275
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.33 E-value=52 Score=26.47 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCcccHHH
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYV 293 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~ 293 (651)
...++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 45678888889999999999999863111 123345555555655432 4567778888877766544333
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.05 E-value=1.1e+02 Score=24.42 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006303 565 EGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (651)
Q Consensus 565 ~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (651)
+++..+|..|..+|+-- -...|......+...|++.+|.++|+.-++.+-+|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34889999999877654 45678888888999999999999999999988888544
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.91 E-value=1.1e+02 Score=24.41 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=47.5
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
.+-|..-....+.---.. ++..++|..|...|+-- -+..|......+...|++.+|.++|+.-++.+-.|-
T Consensus 64 YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp GTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 445555444433322222 33788888888776543 345677777888888999999999998888876663
No 278
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=44.95 E-value=1.9e+02 Score=26.60 Aligned_cols=109 Identities=10% Similarity=0.015 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCcccHHHHHHHHH
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI----YEDLRSQNVTLNIYVFNSLMN 299 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~g~~~~~~~~~~ll~ 299 (651)
|.++..-|.+++++++|++++..-.. .+.+.|+...|-++ ++-+.+.+++++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44566667777777777777554322 13334554444332 334444556666555555555
Q ss_pred hhcC---ChHHHHHHHHHH----HHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006303 300 VNAH---DLKFTLEVYKNM----QKLG--VMADMASYNILLKACCLAGNTVLAQEIY 347 (651)
Q Consensus 300 ~~~~---~~~~a~~~~~~m----~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 347 (651)
.... .-..-.++++.+ .+.| ..-++.....+...|.+.|++.+|...|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4331 111112222222 2222 1125556666666666666666666555
No 279
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=43.83 E-value=1.3e+02 Score=27.91 Aligned_cols=111 Identities=9% Similarity=0.113 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHH----HHhcCCHHHHHHHHH
Q 006303 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT--AIKV----CVRSKRLKQAFSLFE 607 (651)
Q Consensus 534 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--li~~----~~~~g~~~~A~~~~~ 607 (651)
++++.+.+.|+.|...++..++..|++.=.++.+.++|+.+...|.+ ...+-+ ++.. .....+.++..++++
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~--~l~~valaiL~~~~~~ll~~~~~~~il~~l~ 286 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE--VIFKVALSLLGSHKPLILQHENLETIVDFIK 286 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 56778888899999889999999998888899999999999987654 333322 2222 233457788887777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 006303 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (651)
Q Consensus 608 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~ 649 (651)
.... ..+......++.-.....--++..+.-.-|..|.+
T Consensus 287 ~~~p---~~~~~di~~li~~A~~l~~s~~l~~~e~ey~~l~~ 325 (331)
T 3qye_A 287 STLP---NLGLVQMEKTINQVFEMDIAKQLQAYEVEYHVLQE 325 (331)
T ss_dssp HTTT---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_pred hhCC---CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 6432 23455666677655566555555555556665543
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.27 E-value=1.5e+02 Score=29.61 Aligned_cols=67 Identities=4% Similarity=-0.080 Sum_probs=32.0
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhH-HHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK-FASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
...++.+++.|...+.+++|..+..+.. .|.. .........+..+++.+..+++|.+|.+.|....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555566666666666666555442 1211 00111122233445555556666666655555554
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.83 E-value=69 Score=27.64 Aligned_cols=52 Identities=12% Similarity=-0.059 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 89 EFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 89 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
++..+|..|...|+--. ....+..-+..+-..|++.+|..+|+..++.+..|
T Consensus 132 ~p~~if~~L~~~~IG~~------~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQE------SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTT------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchh------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45566666666654432 12222333444556667777777776666666666
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.46 E-value=1.5e+02 Score=24.14 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 565 EGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (651)
Q Consensus 565 ~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 621 (651)
+.+..+|..|..+|+--. ...|......+-..|++.+|.++|+.-++.+-+|-...-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQ 134 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 347778999998776544 567788888899999999999999999998888866543
No 283
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.08 E-value=2.3e+02 Score=26.02 Aligned_cols=118 Identities=8% Similarity=0.010 Sum_probs=65.2
Q ss_pred hhhccCChHHHHHHHHHHHHhcC----C-hh---HHHhhhhHH---HHHhHHHHhhh---hcChhHHHHHHHHHHHcCCC
Q 006303 80 KLAKDGRLEEFAMIVESVVVSEG----N-VS---KFASMLSLE---MVASGIVKSIR---EGRIDCVVGVLKKLNELGVA 145 (651)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~----~-p~---~~~~~~~~~---~~~~~~~~~~~---~g~~~~a~~~l~~~~~~~~~ 145 (651)
.+...|++.+|+..|+.++..=+ + .+ ....++... ++.-.+..-.+ ..+..+.+++-..+-...++
T Consensus 123 k~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~c~LQ 202 (325)
T 3mv2_A 123 KNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTKAKLS 202 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGSCCC
T ss_pred HHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhccCCCc
Confidence 34568999999999999887511 0 01 111111110 00000111111 23445566666666666677
Q ss_pred ccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
|.. ....|-.+.....+.+++..|..+.+++++.+..++..+-...++..|-
T Consensus 203 p~H-----~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce 254 (325)
T 3mv2_A 203 PIH-----RTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKAD 254 (325)
T ss_dssp HHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 654 3445556666777789999999999999987743333333333344443
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.94 E-value=1.6e+02 Score=23.89 Aligned_cols=72 Identities=15% Similarity=0.071 Sum_probs=48.3
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 433 (651)
.+-|.......+.---.. ++...+|..|...|+-- -...|......+...|++.+|.++|..-++.+-.|..
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 445555444444222222 33677888888877543 3456777777888889999999999999888777744
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.70 E-value=1.1e+02 Score=23.57 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 006303 328 NILLKACCLAGNTVLAQEIYGEV 350 (651)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~ 350 (651)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34444444455555555444444
No 286
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=35.21 E-value=1.3e+02 Score=21.85 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSK 597 (651)
Q Consensus 567 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 597 (651)
|..+.++....|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444455555555555555444444
No 287
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.22 E-value=1.1e+02 Score=21.01 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=31.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 574 MREDGMSPDVVAYTTAIKVCVRSK-RLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (651)
Q Consensus 574 ~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 633 (651)
+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4455555554432 3334444432 334455666666655555566666666666665554
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.97 E-value=2.9e+02 Score=30.29 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=39.6
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHH
Q 006303 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASK 248 (651)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 248 (651)
.++..|...+.++.|.++....|.++..-..++.+|...|++++|...|++..
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 35666777778887877777777776556667788888888888888887654
No 289
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=33.25 E-value=2.2e+02 Score=26.06 Aligned_cols=110 Identities=10% Similarity=0.168 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHH----HHhcCCHHHHHHHHH
Q 006303 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT--AIKV----CVRSKRLKQAFSLFE 607 (651)
Q Consensus 534 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--li~~----~~~~g~~~~A~~~~~ 607 (651)
++++.+.+.|+.|...++.-++..|++.=.++.+.++|+.+...|. ....+-+ ++.. .. ..+.++..++++
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~--~~l~~v~lail~~~~~~Ll-~~d~~~~l~~l~ 251 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL--NIIFHVALALLKTSKEDLL-QADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT--THHHHHHHHHHHHTHHHHH-TCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc--HHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 4667777788889888888888888887789999999999988764 3332222 2211 22 347888888886
Q ss_pred -HHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Q 006303 608 -EMKHYQIQPNLVTYITLLRARSRY-GSLHEVQQCLAVYQDMW 648 (651)
Q Consensus 608 -~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~m~ 648 (651)
.+-.. . ++......++...... =...+..+.-+.+..|.
T Consensus 252 ~~lp~~-~-~~~~d~~~ll~~A~~l~~~~~~l~~~~~ey~~~~ 292 (310)
T 3hzj_A 252 VQLPKR-Y-RAEENARRLMEQACNIKVPTKKLKKYEKEYQTMR 292 (310)
T ss_dssp THHHHT-T-CSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred HhCccc-c-cccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33321 1 2222333444433332 22344555555555554
No 290
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.20 E-value=1.4e+02 Score=21.57 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 006303 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR-----EDGMSPDVVAYTTA 589 (651)
Q Consensus 531 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 589 (651)
.+..+.++...-|+.|+..+..-++..|...+- + +.++.++.. ..|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 456677777888899988888888887766553 2 444433332 35677777666544
No 291
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.65 E-value=3.1e+02 Score=25.20 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=56.9
Q ss_pred HhhhccCChHHHHHHHHHHHHhcC-----Chh---HHHhhhhHHHHHhHH--HHhhhh-------cChhHHHHHHHHHHH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEG-----NVS---KFASMLSLEMVASGI--VKSIRE-------GRIDCVVGVLKKLNE 141 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~-----~p~---~~~~~~~~~~~~~~~--~~~~~~-------g~~~~a~~~l~~~~~ 141 (651)
-.+...|++.+|+..|+.++..=+ ..+ ....++....-..++ ....+. .+..+.+++-..+-.
T Consensus 110 yk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAAYFT~ 189 (320)
T 3mkr_B 110 YQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAAYFTH 189 (320)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHhcc
Confidence 334568999999999999987621 001 111111100000000 011111 122334455555555
Q ss_pred cCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCC
Q 006303 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL 186 (651)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 186 (651)
..++|.. ....|-.+.....+.+++..|..+-+++++.+.
T Consensus 190 c~Lqp~H-----~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 229 (320)
T 3mkr_B 190 SNLQPVH-----MILVLRTALNLFFKLKNFRTAAAFARRLLELGP 229 (320)
T ss_dssp SCCCHHH-----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCC
T ss_pred CCCcHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 5666644 344555666677778999999999999998763
No 292
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.66 E-value=2e+02 Score=22.81 Aligned_cols=63 Identities=6% Similarity=0.031 Sum_probs=43.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 450 (651)
+.+.+.|+.+ ...-..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-..
T Consensus 16 ~~l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 4456777764 44455677777777777889999999988876777777666667777766554
No 293
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.61 E-value=1.9e+02 Score=24.66 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 87 LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 87 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
++.|+.+++.+.+.-.-|+.....+-.-+-...+..|.+.|.+++|.++|++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 57888899888777433333221111112234556688999999999999999873
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.40 E-value=3e+02 Score=23.71 Aligned_cols=145 Identities=11% Similarity=0.120 Sum_probs=78.0
Q ss_pred hhhhHHHHHhhhccC------ChHHHHHHHHHHHHh---cCChhHHHhhhhHHHHHhHHHHhhhhcC-hhHHHHHHHHHH
Q 006303 71 NDYYADMASKLAKDG------RLEEFAMIVESVVVS---EGNVSKFASMLSLEMVASGIVKSIREGR-IDCVVGVLKKLN 140 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~a~~~l~~~~ 140 (651)
......|..++.... ...+....|+.-+.. |-+|-... ...+..+...|-..+. -..-..++++..
T Consensus 29 GRs~~~L~~~l~~~~~~~~~~~l~~~r~~fE~~i~~~~~~dDPL~~w----~~YIkW~ee~yP~g~~~~s~L~~lLErc~ 104 (223)
T 4aez_C 29 GHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVW----IDYIKWTLDNFPQGETKTSGLVTLLERCT 104 (223)
T ss_dssp CCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHGGGSSCTHHHH----HHHHHHHHHHCTTCCCTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcccCCCChHHH----HHHHHHHHHhCcCCCcchhhHHHHHHHHH
Confidence 334444555544322 234455556655443 45664321 2222333344433332 223455666665
Q ss_pred HcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCC
Q 006303 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (651)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 220 (651)
+. ...+.. |..-. -+++.|..|.+. .+++..+|..|...++-...
T Consensus 105 ~~-F~~~~r-YknD~-RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~------------------------------ 149 (223)
T 4aez_C 105 RE-FVRNPL-YKDDV-RYLRIWMQYVNY--IDEPVELFSFLAHHHIGQES------------------------------ 149 (223)
T ss_dssp HH-TTTCGG-GTTCH-HHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTB------------------------------
T ss_pred HH-hccccc-ccCCH-HHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhH------------------------------
Confidence 53 111111 11111 156677777663 35777788888776654322
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 254 (651)
...|-.....+...|++.+|.++|+.-++.+-.|
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 2445666778888899999999999888877767
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=27.36 E-value=2.4e+02 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=12.6
Q ss_pred HHhhhhcChhHHHHHHHHHHHcCCCcc
Q 006303 121 VKSIREGRIDCVVGVLKKLNELGVAPL 147 (651)
Q Consensus 121 ~~~~~~g~~~~a~~~l~~~~~~~~~~~ 147 (651)
...++.|+.+.+..+ .+.|..++
T Consensus 10 ~~A~~~g~~~~v~~L----l~~g~~~~ 32 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQL----LEGGANVN 32 (285)
T ss_dssp HHHHHTTCHHHHHHH----HHTTCCTT
T ss_pred HHHHHcCCHHHHHHH----HHcCCCcc
Confidence 345677877654444 44455444
No 296
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.29 E-value=3.6e+02 Score=24.60 Aligned_cols=108 Identities=10% Similarity=0.060 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHH
Q 006303 309 LEVYKNMQKLGVMADMAS--YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
..+.+.+.+.|..++... -.+.+...+..|..+.+..+++.-. ...-..|..-.+.|. ..++.|+.+ +.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~----~~vn~~d~~G~TpL~-~A~~~g~~~----iv 289 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH----IEINDTDSDGKTALL-LAVELKLKK----IA 289 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT----CCTTCBCTTSCBHHH-HHHHTTCHH----HH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC----CcccCcCCCCCCHHH-HHHHcCCHH----HH
Confidence 344555566665554321 1123344556677665554443110 000011222222332 234455543 44
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
+.+++.|..++..+ . +...++.|+.+ +.+.+++.|-.||
T Consensus 290 ~~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 290 ELLCKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HHHHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHHHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 45556676665543 2 22334455543 3444555554444
No 297
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.58 E-value=4.3e+02 Score=24.88 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=38.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc----HHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCcccHHHH
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGD-YMKSRAIYEDLRSQNVTLNIYVF 294 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~ 294 (651)
..+++.-|...|+.++|.+.++++.. |+ ..++..+..++-+... -+.+-.++..+...|+-+.....
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~ 86 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFM 86 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 34677788888888888888888754 43 2234444444433211 24455566666665554433333
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.57 E-value=2.4e+02 Score=26.52 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCcccHHHHHH
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYVFNS 296 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (651)
...++.-|...|+.++|.+.++++..-.. ....+...+..++-+.++ .+...+++..+...|+-+.......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 45677778888888888888888764111 123344455555554433 3456677777776666544444333
No 299
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=25.04 E-value=35 Score=30.56 Aligned_cols=76 Identities=16% Similarity=0.062 Sum_probs=39.4
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHH--HHHHHHHHHhcCC
Q 006303 559 GGSGNVEGALQILKIMREDGMSPDVVA--YTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVT--YITLLRARSRYGS 633 (651)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~--~~~l~~~~~~~g~ 633 (651)
+..|+.....++++.+.+.|..++... -.+.+...++.|+.+-+ +.+.+ .|..++... -.+.+....+.|.
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~ 265 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV----QRLLEQEHIEINDTDSDGKTALLLAVELKL 265 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHH----HHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH----HHHHhccCCCccccCCCCCcHHHHHHHcCc
Confidence 345555555677777788777665431 12334444556776544 34443 455554321 1233444556677
Q ss_pred HHHHH
Q 006303 634 LHEVQ 638 (651)
Q Consensus 634 ~~~a~ 638 (651)
.+-++
T Consensus 266 ~~i~~ 270 (285)
T 1wdy_A 266 KKIAE 270 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65433
No 300
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=24.38 E-value=7.1e+02 Score=27.04 Aligned_cols=147 Identities=9% Similarity=0.019 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHCC----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 305 LKFTLEVYKNMQKLG----VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 305 ~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
.+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++.... ..+..--..++.+++...+..
T Consensus 705 ~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~-------~~~~~ek~~ll~aL~~~~d~~ 775 (909)
T 4fke_A 705 ENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQ-------AQLVNEADKLRSALACSNEVW 775 (909)
T ss_dssp HHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHH-------CCSHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHc-------cCCHHHHHHHHHHhCCCCCHH
Confidence 456777887776532 455533 3333344456776666666666654 235555677888998889988
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAG-LVEQAMHLFEEMLQ---AGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
...++++............... ++.+..... -.+.+++.+..=-+ .........+..++......-.-++-.+-+
T Consensus 776 ~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~~ 854 (909)
T 4fke_A 776 LLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQL 854 (909)
T ss_dssp HHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred HHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888888776543222222222 333433322 23445554443211 112223335666777766655545545555
Q ss_pred HHhhh
Q 006303 457 RSWTL 461 (651)
Q Consensus 457 ~~~~~ 461 (651)
+...+
T Consensus 855 ~~f~~ 859 (909)
T 4fke_A 855 EQFKK 859 (909)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55543
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.60 E-value=6.1e+02 Score=27.73 Aligned_cols=108 Identities=10% Similarity=-0.018 Sum_probs=67.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC-------------
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP------------- 396 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~------------- 396 (651)
++..+...|..+-+.++... .+.+...--.+..+|...|++++|..+|+++- .|+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~---------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ 885 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW---------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQE 885 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG---------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh---------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhh
Confidence 55666667777665544322 23344444467788899999999999998754 22211
Q ss_pred ----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcC
Q 006303 397 ----------NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ----CCNILLQACVEAC 447 (651)
Q Consensus 397 ----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g 447 (651)
...-|..++..+.+.+.++.+.++-+..++.--..|.. .|+.++++.+..|
T Consensus 886 ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 886 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11246777888888888888888888777643222332 4556666555433
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.19 E-value=2.7e+02 Score=21.81 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=29.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 574 MREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (651)
Q Consensus 574 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 633 (651)
+.+.|++++..=. .++..+...+..-.|.++++.+.+.+-..+..|..-.+..+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4445555544322 2333333344444566666666555545555565555555555553
No 303
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.17 E-value=3e+02 Score=22.25 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=44.0
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHH--HhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMV--ASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
..+..-+..|- .|+|-+|-+++|..+.....|+.-..++ .... ...+..+.+.|++.-|..++++....
T Consensus 34 ~~~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~l-qGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 34 RAVVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFL-HGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34444444444 4999999999999999855551111111 1111 12333456799999999999998774
No 304
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.94 E-value=83 Score=21.78 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=23.5
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHh
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (651)
.-...+++-|+..|+++.|+..|+.+++.
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34456778888899999999999988765
No 305
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.91 E-value=6.5e+02 Score=26.05 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=14.1
Q ss_pred HhcCChhHHHHHHHHhh
Q 006303 444 VEACQFDRAFRLFRSWT 460 (651)
Q Consensus 444 ~~~g~~~~a~~~~~~~~ 460 (651)
...|+++.|++.++++.
T Consensus 549 ~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHTTCHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHhCC
Confidence 67899999998888765
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.84 E-value=88 Score=25.98 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=6.4
Q ss_pred HHHHHHHHHCCCCC
Q 006303 383 LKVKEDMLSAGVTP 396 (651)
Q Consensus 383 ~~~~~~m~~~~~~~ 396 (651)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 34444445554433
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.49 E-value=2.4e+02 Score=25.81 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCcccHHH
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYV 293 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~ 293 (651)
...++.-|...|+.++|.+.++++..-.. ....+...+..++-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 44678888888899999888888864111 123344455555555433 4556677777776665544333
No 308
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.35 E-value=5.5e+02 Score=24.98 Aligned_cols=103 Identities=14% Similarity=0.024 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-------CCcHHH------------------HHHHHHHH---hcCCC
Q 006303 512 KPTTTTYNILMKACCTDYYRVKALMNEMRTVGL-------SPNHIS------------------WTILIDAC---GGSGN 563 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~-------~p~~~~------------------~~~li~~~---~~~g~ 563 (651)
..+......++..+.++..++..+++.+..... ..+... +-.++.++ .+.++
T Consensus 191 ~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd 270 (447)
T 3pvs_A 191 VLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSA 270 (447)
T ss_dssp ECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCC
Confidence 445556666666655677777777666654211 011111 11122222 23467
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 006303 564 VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKR-----LKQAFSLFEEMKHYQI 614 (651)
Q Consensus 564 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~ 614 (651)
.+.|..++.+|.+.|..|....=..++.+.-.-|. ...|...++.....|.
T Consensus 271 ~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 271 PDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 77777777777777665544433344444444443 2334444444444443
No 309
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.25 E-value=75 Score=20.55 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=15.4
Q ss_pred cHHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 006303 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319 (651)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~ 319 (651)
+......++..+.++.+.|...+-.|...+
T Consensus 24 d~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 24 DQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp CHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 444555555555555555555555554433
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.10 E-value=2.3e+02 Score=22.22 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=43.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 450 (651)
+.+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-..
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 4456778775544 44566666666677788899999988876677777666677777666543
No 311
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=22.09 E-value=7.9e+02 Score=26.77 Aligned_cols=184 Identities=13% Similarity=-0.033 Sum_probs=95.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCcccHHHHH-HHHH---hhcCChHHHHHHHHHHHHCCC--C-----CCHHhHHHHHHHH
Q 006303 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFN-SLMN---VNAHDLKFTLEVYKNMQKLGV--M-----ADMASYNILLKAC 334 (651)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-~ll~---~~~~~~~~a~~~~~~m~~~~~--~-----~~~~~~~~ll~~~ 334 (651)
....|+.++++.++......+...+.+.-. +++. .++|..+++..++.......- . +....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345566777777776655421112333322 2222 244655567777766554311 0 1111122222223
Q ss_pred HhcCC-HHHHHHHHHHHHHhhhcCCccccHH----HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHH
Q 006303 335 CLAGN-TVLAQEIYGEVKHLEAKGVLKLDVF----TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW--SSLINA 407 (651)
Q Consensus 335 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~ 407 (651)
...|. -+++.+.+..+.. ..+.. .--.|...++-.|+-+-...++..+.+.. +.... ..+.-+
T Consensus 464 a~~GS~~eev~e~L~~~L~-------dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLG 533 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLY-------NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLA 533 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHH-------TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHh-------cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHH
Confidence 22332 2455555555543 12221 11233444556788888888888777642 33333 333334
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCChhHHHHHHHHhhh
Q 006303 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCN---ILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
+.-.|+.+.+..+.+.+.... .|.. -|. .+.-+|+..|+.....++++.+..
T Consensus 534 ll~~g~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 534 LINYGRQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hhhCCChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 557788888888888887642 2222 233 233467788888777778887764
No 312
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.44 E-value=3.1e+02 Score=21.71 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=19.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 592 VCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYG 632 (651)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 632 (651)
.+...+..-.|.++++.+.+.+-..+..|..-.+..+...|
T Consensus 35 ~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 35 VLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333334445555555554444445555555555554444
No 313
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.88 E-value=3.9e+02 Score=22.72 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCC
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 562 (651)
+.+.|+-.+-.|++.|-.|....--.++-+.-..|
T Consensus 50 DpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 50 DPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 55666666666666555554444444444444333
No 314
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.77 E-value=3.6e+02 Score=22.34 Aligned_cols=172 Identities=10% Similarity=-0.049 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCc
Q 006303 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475 (651)
Q Consensus 396 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 475 (651)
++...-...+..+.+.+..+....+.+.+. .++..+-...+.++.+.++.+....+.+.+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~--------------- 91 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLIKALK--------------- 91 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT---------------
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc---------------
Q ss_pred hhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh-cHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006303 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-DYYRVKALMNEMRTVGLSPNHISWTIL 554 (651)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l 554 (651)
.++..+=...+.++.+ ....+...+..+.. .++..+-...
T Consensus 92 ------------------------------------~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~---d~~~~vr~~a 132 (211)
T 3ltm_A 92 ------------------------------------DEDGWVRQSAAVALGQIGDERAVEPLIKALK---DEDWFVRIAA 132 (211)
T ss_dssp ------------------------------------CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHH
T ss_pred ------------------------------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHh---CCCHHHHHHH
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 555 IDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (651)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 633 (651)
+.++.+.|. .++...+..+.+ .++...-...+.++.+.|. .++...+..+.+ .++...-...+.++.+.+.
T Consensus 133 ~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 133 AFALGEIGD-ERAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC---
T ss_pred HHHHHHcCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhcCC
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.21 E-value=3.5e+02 Score=21.88 Aligned_cols=60 Identities=8% Similarity=-0.073 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 006303 551 WTILIDACGGSGNVEGALQILKIMREDGMSP--DVVAYTTAIK-V-----CVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 611 (651)
|..-+..| ..|++-+|.++|+..=...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333434 3489999999999886654344 5566777777 2 3557999999999998864
No 316
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.20 E-value=3.4e+02 Score=21.75 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (651)
.+.+..++..+.+.|+-.|...-...+....+.|. ....+-.++..+|+.. .+....+..+- ....+.|.+++++
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~KGI~~--~~i~~al~~~~-~d~~~~a~~l~~k 120 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQKGISR--EATEKAMREAD-IDWAALARDQATR 120 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHTTCCH--HHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHcCCCH--HHHHHHHHHcC-HhHHHHHHHHHHH
Confidence 45667888889999988777777777777766542 3456778888898863 33333333331 2234556666664
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 609 MKHYQIQPNLVTYITLLRARSRYGSLH 635 (651)
Q Consensus 609 m~~~g~~p~~~~~~~l~~~~~~~g~~~ 635 (651)
-......++.....-++..+.+.|---
T Consensus 121 k~~~~~~~~~~~~~K~~~~L~rrGF~~ 147 (159)
T 3c1d_A 121 KYGEPLPTVFSEKVKIQRFLLYRGYLM 147 (159)
T ss_dssp HHCSSCCCSHHHHHHHHHHHHHTTCCH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCCH
Confidence 432223455667778888888888643
No 317
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.03 E-value=3.7e+02 Score=24.91 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=15.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 006303 225 CNFVREFGKKRDLVSALRAYDASK 248 (651)
Q Consensus 225 ~~l~~~~~~~g~~~~a~~~~~~~~ 248 (651)
..++.-|...|+.++|.+.++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 446666666777777777776664
Done!