Query 006305
Match_columns 651
No_of_seqs 105 out of 117
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 21:21:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05911 DUF869: Plant protein 100.0 1E-134 3E-139 1136.9 49.3 498 79-623 1-769 (769)
2 TIGR02168 SMC_prok_B chromosom 98.3 0.016 3.4E-07 68.3 53.3 65 388-452 676-740 (1179)
3 TIGR02169 SMC_prok_A chromosom 98.3 0.017 3.6E-07 68.5 56.6 50 388-437 673-722 (1164)
4 COG1196 Smc Chromosome segrega 98.1 0.053 1.2E-06 66.3 52.3 61 390-450 668-728 (1163)
5 PF09730 BicD: Microtubule-ass 98.1 0.049 1.1E-06 63.9 43.7 57 396-452 265-321 (717)
6 KOG0161 Myosin class II heavy 97.9 0.17 3.8E-06 64.8 46.9 197 407-613 1608-1813(1930)
7 PF00261 Tropomyosin: Tropomyo 97.9 0.0059 1.3E-07 62.0 23.6 216 386-606 5-230 (237)
8 TIGR02169 SMC_prok_A chromosom 97.7 0.24 5.3E-06 58.9 49.5 66 386-451 678-743 (1164)
9 PRK02224 chromosome segregatio 97.6 0.31 6.7E-06 57.4 48.2 208 394-614 368-592 (880)
10 PF00261 Tropomyosin: Tropomyo 97.6 0.014 3.1E-07 59.2 21.1 156 387-542 34-220 (237)
11 PRK02224 chromosome segregatio 97.5 0.41 9E-06 56.4 54.1 30 389-418 475-504 (880)
12 COG1196 Smc Chromosome segrega 97.4 0.6 1.3E-05 57.5 49.3 80 60-139 232-318 (1163)
13 KOG0161 Myosin class II heavy 97.3 1.2 2.7E-05 57.5 50.3 129 481-614 1615-1778(1930)
14 TIGR02168 SMC_prok_B chromosom 97.3 0.72 1.6E-05 54.7 52.8 73 389-461 670-742 (1179)
15 PF12718 Tropomyosin_1: Tropom 97.3 0.045 9.7E-07 52.4 19.2 86 386-482 4-89 (143)
16 KOG4674 Uncharacterized conser 96.9 2.5 5.5E-05 54.3 43.9 476 58-623 634-1135(1822)
17 TIGR00606 rad50 rad50. This fa 96.7 2.7 5.9E-05 52.6 45.2 142 421-564 748-898 (1311)
18 PF00038 Filament: Intermediat 96.6 1.1 2.4E-05 46.5 27.4 68 386-453 72-139 (312)
19 PRK11637 AmiB activator; Provi 96.5 1.4 3E-05 48.4 25.7 68 387-454 45-119 (428)
20 PF05911 DUF869: Plant protein 96.5 3 6.5E-05 49.9 40.2 153 386-551 593-747 (769)
21 PF09726 Macoilin: Transmembra 96.5 0.63 1.4E-05 54.8 23.7 218 99-449 422-654 (697)
22 TIGR00606 rad50 rad50. This fa 96.3 5.2 0.00011 50.2 46.9 26 588-613 978-1003(1311)
23 PRK09039 hypothetical protein; 96.2 0.8 1.7E-05 49.5 21.3 138 404-541 47-187 (343)
24 PF12128 DUF3584: Protein of u 96.2 5.4 0.00012 49.7 55.7 70 192-261 465-534 (1201)
25 KOG0933 Structural maintenance 96.0 5.7 0.00012 48.8 47.0 222 387-610 682-936 (1174)
26 KOG0971 Microtubule-associated 96.0 3 6.6E-05 50.5 25.5 58 394-454 229-292 (1243)
27 KOG0977 Nuclear envelope prote 95.9 0.92 2E-05 52.1 20.9 155 388-560 41-217 (546)
28 PF09726 Macoilin: Transmembra 95.5 2.9 6.3E-05 49.5 23.2 101 429-536 458-576 (697)
29 PF01576 Myosin_tail_1: Myosin 95.3 0.0049 1.1E-07 73.2 0.0 149 406-561 549-700 (859)
30 PRK03918 chromosome segregatio 95.2 9.1 0.0002 45.2 48.8 68 193-262 304-372 (880)
31 PF12718 Tropomyosin_1: Tropom 95.2 3.1 6.7E-05 40.0 18.5 133 395-556 6-138 (143)
32 PF07888 CALCOCO1: Calcium bin 95.1 8.5 0.00018 44.6 29.4 58 390-447 151-208 (546)
33 KOG0250 DNA repair protein RAD 94.9 14 0.0003 45.8 27.8 228 391-621 223-471 (1074)
34 COG1579 Zn-ribbon protein, pos 94.9 2.7 5.8E-05 44.0 18.4 46 388-433 37-82 (239)
35 PF05557 MAD: Mitotic checkpoi 94.7 0.11 2.3E-06 60.7 8.9 34 504-537 502-535 (722)
36 PF07888 CALCOCO1: Calcium bin 94.7 10 0.00022 44.1 24.0 88 389-483 143-230 (546)
37 KOG0980 Actin-binding protein 94.7 14 0.0003 45.0 28.0 151 412-562 346-502 (980)
38 PF05667 DUF812: Protein of un 94.7 7.7 0.00017 45.3 23.4 210 389-621 321-540 (594)
39 PF04849 HAP1_N: HAP1 N-termin 94.7 2.7 5.8E-05 45.4 18.4 139 389-527 160-305 (306)
40 COG1579 Zn-ribbon protein, pos 94.7 4.3 9.3E-05 42.5 19.3 50 499-548 97-146 (239)
41 PRK04863 mukB cell division pr 94.6 15 0.00032 47.2 27.3 100 510-613 367-468 (1486)
42 PF14662 CCDC155: Coiled-coil 94.5 6.2 0.00014 40.2 22.7 162 397-558 23-190 (193)
43 KOG4674 Uncharacterized conser 94.1 27 0.00058 45.7 45.8 184 82-265 211-474 (1822)
44 PF01576 Myosin_tail_1: Myosin 93.8 0.018 3.9E-07 68.6 0.0 73 101-185 411-483 (859)
45 PF10174 Cast: RIM-binding pro 93.7 21 0.00045 43.2 44.3 60 503-563 505-564 (775)
46 KOG0996 Structural maintenance 93.7 26 0.00055 44.1 27.7 56 505-560 479-534 (1293)
47 KOG0933 Structural maintenance 93.5 26 0.00055 43.5 25.2 37 397-433 742-778 (1174)
48 KOG0977 Nuclear envelope prote 93.5 7.1 0.00015 45.2 19.7 208 385-601 151-390 (546)
49 KOG1029 Endocytic adaptor prot 93.3 4.4 9.6E-05 48.5 17.8 151 384-552 439-589 (1118)
50 KOG0996 Structural maintenance 92.8 34 0.00074 43.0 42.0 162 398-560 780-951 (1293)
51 KOG0976 Rho/Rac1-interacting s 92.2 34 0.00074 41.7 31.0 65 387-451 335-399 (1265)
52 KOG0971 Microtubule-associated 91.7 41 0.0009 41.5 28.4 78 527-616 463-547 (1243)
53 KOG0980 Actin-binding protein 90.9 47 0.001 40.7 22.8 132 406-537 361-519 (980)
54 PF10473 CENP-F_leu_zip: Leuci 89.9 20 0.00044 34.8 16.4 89 389-477 10-105 (140)
55 PF15619 Lebercilin: Ciliary p 89.7 25 0.00054 35.6 19.8 105 423-530 67-189 (194)
56 PF13851 GAS: Growth-arrest sp 89.4 25 0.00055 35.6 16.7 123 81-227 2-124 (201)
57 PF05701 WEMBL: Weak chloropla 89.4 46 0.00099 38.2 42.5 61 202-262 129-189 (522)
58 PF04156 IncA: IncA protein; 88.3 26 0.00057 34.1 16.2 54 506-559 131-184 (191)
59 PF08317 Spc7: Spc7 kinetochor 88.0 26 0.00055 37.7 16.5 38 499-536 224-261 (325)
60 PF00038 Filament: Intermediat 88.0 37 0.0008 35.4 29.3 79 388-466 53-131 (312)
61 KOG0964 Structural maintenance 87.3 54 0.0012 40.8 19.9 26 389-414 265-290 (1200)
62 PF08614 ATG16: Autophagy prot 87.3 3.3 7.2E-05 41.1 8.9 33 494-526 147-179 (194)
63 KOG0963 Transcription factor/C 87.2 71 0.0015 37.9 22.4 115 422-542 187-315 (629)
64 PF15070 GOLGA2L5: Putative go 86.7 76 0.0016 37.6 23.6 54 507-560 162-215 (617)
65 KOG0995 Centromere-associated 86.6 73 0.0016 37.4 26.0 95 387-481 233-354 (581)
66 KOG0963 Transcription factor/C 86.5 36 0.00078 40.2 17.5 101 423-529 241-341 (629)
67 smart00787 Spc7 Spc7 kinetocho 86.0 38 0.00082 36.7 16.5 110 400-537 148-257 (312)
68 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.5 32 0.0007 32.3 18.0 39 389-427 10-48 (132)
69 PF13851 GAS: Growth-arrest sp 85.1 46 0.001 33.7 16.8 133 399-560 30-163 (201)
70 PF14915 CCDC144C: CCDC144C pr 84.2 69 0.0015 35.0 22.0 189 56-259 87-292 (305)
71 KOG1003 Actin filament-coating 83.7 58 0.0013 33.7 22.4 55 497-558 143-197 (205)
72 PF10473 CENP-F_leu_zip: Leuci 83.4 47 0.001 32.4 15.2 66 495-560 49-114 (140)
73 KOG0612 Rho-associated, coiled 83.3 1.5E+02 0.0032 38.0 25.4 41 418-458 495-535 (1317)
74 KOG1003 Actin filament-coating 82.9 62 0.0014 33.5 16.9 29 501-529 126-154 (205)
75 PF09755 DUF2046: Uncharacteri 82.8 79 0.0017 34.6 25.0 119 442-560 139-285 (310)
76 KOG0999 Microtubule-associated 82.5 1.1E+02 0.0024 36.2 42.3 190 392-601 314-506 (772)
77 KOG0964 Structural maintenance 82.2 1.5E+02 0.0032 37.3 49.7 95 392-486 674-775 (1200)
78 KOG4807 F-actin binding protei 81.9 97 0.0021 35.3 17.6 113 59-174 244-378 (593)
79 PF08826 DMPK_coil: DMPK coile 81.9 18 0.00039 30.7 9.5 47 493-539 13-59 (61)
80 PF00769 ERM: Ezrin/radixin/mo 81.9 70 0.0015 33.4 16.8 46 407-452 2-47 (246)
81 PF08614 ATG16: Autophagy prot 81.8 15 0.00033 36.4 10.7 76 388-463 80-155 (194)
82 PF10481 CENP-F_N: Cenp-F N-te 81.7 44 0.00095 36.2 14.4 46 394-446 16-61 (307)
83 PLN03229 acetyl-coenzyme A car 81.7 1.3E+02 0.0029 36.5 20.4 111 470-594 601-733 (762)
84 KOG0994 Extracellular matrix g 81.7 70 0.0015 40.7 17.6 133 120-258 1222-1367(1758)
85 TIGR01843 type_I_hlyD type I s 81.6 78 0.0017 33.7 19.4 9 550-558 263-271 (423)
86 TIGR03185 DNA_S_dndD DNA sulfu 81.6 1.2E+02 0.0025 35.7 27.1 48 402-449 208-255 (650)
87 TIGR01843 type_I_hlyD type I s 81.2 81 0.0018 33.6 20.1 18 543-560 249-266 (423)
88 PF10481 CENP-F_N: Cenp-F N-te 80.8 46 0.001 36.0 14.2 116 436-569 16-131 (307)
89 PF08317 Spc7: Spc7 kinetochor 80.5 73 0.0016 34.3 16.0 50 397-446 150-199 (325)
90 KOG4643 Uncharacterized coiled 79.9 1.8E+02 0.0038 36.7 21.2 51 510-560 493-543 (1195)
91 PF04156 IncA: IncA protein; 79.6 63 0.0014 31.5 16.2 49 505-553 137-185 (191)
92 KOG4673 Transcription factor T 79.0 1.4E+02 0.0031 36.2 18.4 60 386-448 577-636 (961)
93 smart00787 Spc7 Spc7 kinetocho 78.5 43 0.00092 36.3 13.5 16 518-533 270-285 (312)
94 PF07111 HCR: Alpha helical co 77.6 1.7E+02 0.0038 35.4 25.3 53 389-441 162-214 (739)
95 PF00769 ERM: Ezrin/radixin/mo 77.2 98 0.0021 32.3 17.2 66 393-458 2-67 (246)
96 PF04111 APG6: Autophagy prote 76.9 43 0.00094 36.1 13.0 80 385-464 46-125 (314)
97 PF09730 BicD: Microtubule-ass 76.7 1.8E+02 0.004 35.2 26.4 46 419-464 116-161 (717)
98 PF05010 TACC: Transforming ac 76.6 98 0.0021 32.0 22.0 61 493-553 138-202 (207)
99 KOG0982 Centrosomal protein Nu 76.2 1.2E+02 0.0026 34.8 16.3 145 464-614 213-387 (502)
100 COG4942 Membrane-bound metallo 75.5 1.5E+02 0.0033 33.7 27.9 71 391-461 40-110 (420)
101 PRK04778 septation ring format 75.3 1.7E+02 0.0036 34.0 25.3 42 222-263 175-216 (569)
102 PRK10884 SH3 domain-containing 74.1 45 0.00097 34.2 11.6 25 509-533 143-167 (206)
103 KOG0995 Centromere-associated 73.6 2E+02 0.0043 34.1 27.2 204 390-613 309-547 (581)
104 PLN03229 acetyl-coenzyme A car 73.2 1.3E+02 0.0028 36.6 16.5 75 471-560 647-732 (762)
105 PF07989 Microtub_assoc: Micro 72.8 23 0.00051 30.9 8.0 64 194-263 5-68 (75)
106 TIGR03007 pepcterm_ChnLen poly 71.7 1.7E+02 0.0037 32.6 20.9 30 507-536 312-341 (498)
107 KOG1029 Endocytic adaptor prot 71.7 2.6E+02 0.0056 34.6 25.2 58 423-480 408-465 (1118)
108 PF10212 TTKRSYEDQ: Predicted 71.3 2.1E+02 0.0046 33.5 18.1 56 502-560 445-500 (518)
109 PRK09039 hypothetical protein; 70.2 1.7E+02 0.0037 32.0 20.7 52 397-448 47-105 (343)
110 PRK04778 septation ring format 70.1 2.2E+02 0.0047 33.1 25.5 32 150-181 152-183 (569)
111 KOG0804 Cytoplasmic Zn-finger 70.0 36 0.00077 39.0 10.6 55 98-152 357-411 (493)
112 PF15619 Lebercilin: Ciliary p 69.9 1.3E+02 0.0029 30.5 24.1 174 426-613 7-183 (194)
113 COG4372 Uncharacterized protei 69.9 2.1E+02 0.0045 32.8 24.6 173 390-563 75-275 (499)
114 KOG0612 Rho-associated, coiled 69.8 3.3E+02 0.0072 35.1 37.3 179 67-257 475-693 (1317)
115 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.6 1E+02 0.0022 29.1 17.2 27 401-427 8-34 (132)
116 PF05701 WEMBL: Weak chloropla 69.4 2.2E+02 0.0048 32.9 45.2 106 484-601 372-477 (522)
117 TIGR01005 eps_transp_fam exopo 69.3 2.5E+02 0.0053 33.4 19.3 50 507-556 354-406 (754)
118 PRK03918 chromosome segregatio 68.8 2.6E+02 0.0056 33.5 51.9 34 97-130 195-228 (880)
119 PRK10246 exonuclease subunit S 68.4 3.1E+02 0.0068 34.3 23.1 29 508-536 780-808 (1047)
120 TIGR00634 recN DNA repair prot 68.2 2.3E+02 0.005 32.7 21.1 37 524-560 306-342 (563)
121 PF15066 CAGE1: Cancer-associa 68.0 2.4E+02 0.0052 32.8 19.1 77 408-484 381-464 (527)
122 PF09304 Cortex-I_coil: Cortex 67.0 1.2E+02 0.0025 28.8 12.2 59 393-451 13-71 (107)
123 KOG4643 Uncharacterized coiled 65.6 3.7E+02 0.0081 34.1 22.2 144 392-542 274-431 (1195)
124 PRK10884 SH3 domain-containing 64.8 89 0.0019 32.1 11.5 27 385-411 89-115 (206)
125 PF06705 SF-assemblin: SF-asse 64.6 1.8E+02 0.0038 30.0 18.7 84 478-561 50-135 (247)
126 PF12777 MT: Microtubule-bindi 64.3 31 0.00068 37.3 8.6 71 411-481 222-292 (344)
127 PF12128 DUF3584: Protein of u 63.7 4E+02 0.0088 33.9 52.1 68 389-456 476-543 (1201)
128 KOG1899 LAR transmembrane tyro 63.5 3.4E+02 0.0073 32.9 16.8 54 399-452 107-160 (861)
129 PF08826 DMPK_coil: DMPK coile 61.8 62 0.0013 27.6 8.1 40 484-523 18-57 (61)
130 KOG1899 LAR transmembrane tyro 61.0 1.8E+02 0.0039 35.0 14.1 138 389-526 118-259 (861)
131 KOG0979 Structural maintenance 60.5 4.5E+02 0.0097 33.3 19.6 61 493-560 257-317 (1072)
132 PF10174 Cast: RIM-binding pro 59.3 4.2E+02 0.0091 32.6 47.5 113 424-536 287-409 (775)
133 PRK10929 putative mechanosensi 59.1 4.4E+02 0.0094 33.7 17.9 49 400-448 106-161 (1109)
134 KOG4403 Cell surface glycoprot 59.1 1E+02 0.0022 35.5 11.4 34 501-534 350-383 (575)
135 KOG0018 Structural maintenance 57.5 5.1E+02 0.011 33.1 23.1 105 505-620 317-428 (1141)
136 PF05266 DUF724: Protein of un 57.1 2.3E+02 0.0049 28.8 12.9 66 402-467 102-167 (190)
137 PF09738 DUF2051: Double stran 56.8 3E+02 0.0064 30.1 14.8 58 391-448 79-136 (302)
138 PRK11281 hypothetical protein; 56.3 5.4E+02 0.012 32.9 21.6 21 531-551 280-300 (1113)
139 COG4026 Uncharacterized protei 55.8 1.1E+02 0.0023 32.6 10.3 51 396-446 135-185 (290)
140 PF10359 Fmp27_WPPW: RNA pol I 55.7 41 0.0009 38.1 8.0 33 384-416 158-190 (475)
141 PF04111 APG6: Autophagy prote 54.1 2.1E+02 0.0045 31.0 12.6 50 397-446 44-93 (314)
142 COG2433 Uncharacterized conser 53.7 2.1E+02 0.0046 34.2 13.2 21 136-161 153-173 (652)
143 PF12240 Angiomotin_C: Angiomo 53.1 2.9E+02 0.0063 28.9 13.7 115 494-610 9-152 (205)
144 PF03962 Mnd1: Mnd1 family; I 52.7 1.1E+02 0.0024 30.8 9.7 57 507-563 64-126 (188)
145 PF14197 Cep57_CLD_2: Centroso 52.3 1.5E+02 0.0032 25.7 9.0 53 484-536 12-64 (69)
146 PF03980 Nnf1: Nnf1 ; InterPr 52.2 1.4E+02 0.0029 27.1 9.3 27 192-218 83-109 (109)
147 PF05278 PEARLI-4: Arabidopsis 51.4 1.1E+02 0.0024 32.9 9.9 44 407-450 190-233 (269)
148 KOG0243 Kinesin-like protein [ 51.2 6.3E+02 0.014 32.2 18.3 32 389-420 441-472 (1041)
149 KOG0243 Kinesin-like protein [ 49.9 6.6E+02 0.014 32.0 18.1 92 503-613 481-579 (1041)
150 KOG0804 Cytoplasmic Zn-finger 49.7 4.8E+02 0.01 30.4 15.0 9 507-515 437-445 (493)
151 PF12795 MscS_porin: Mechanose 48.7 3.2E+02 0.0069 28.0 16.6 33 510-542 183-215 (240)
152 KOG2391 Vacuolar sorting prote 48.5 1.1E+02 0.0025 34.0 9.5 110 478-620 223-337 (365)
153 PF04880 NUDE_C: NUDE protein, 48.4 29 0.00062 34.8 4.7 48 514-565 2-49 (166)
154 PF05557 MAD: Mitotic checkpoi 48.2 5.9 0.00013 46.6 0.0 51 388-438 60-114 (722)
155 KOG4572 Predicted DNA-binding 47.3 6.8E+02 0.015 31.5 16.3 114 120-238 360-503 (1424)
156 PF15290 Syntaphilin: Golgi-lo 46.9 2.9E+02 0.0063 30.3 12.0 25 425-449 76-100 (305)
157 PF12709 Kinetocho_Slk19: Cent 46.8 2.3E+02 0.005 25.9 10.7 38 509-546 46-83 (87)
158 PF04899 MbeD_MobD: MbeD/MobD 45.4 1.9E+02 0.0041 25.3 8.6 56 481-536 3-59 (70)
159 PRK10698 phage shock protein P 45.3 3.7E+02 0.0079 27.8 18.7 22 542-563 161-182 (222)
160 PF04012 PspA_IM30: PspA/IM30 44.6 3.4E+02 0.0073 27.2 19.7 169 378-560 19-216 (221)
161 KOG0976 Rho/Rac1-interacting s 44.1 7.5E+02 0.016 31.1 27.7 81 530-614 351-436 (1265)
162 PF10168 Nup88: Nuclear pore c 43.1 3.1E+02 0.0067 33.2 12.8 46 447-492 602-647 (717)
163 PF09789 DUF2353: Uncharacteri 42.9 5.1E+02 0.011 28.7 18.1 29 492-520 127-155 (319)
164 PF07106 TBPIP: Tat binding pr 42.6 1.2E+02 0.0027 29.3 8.0 60 386-445 76-137 (169)
165 KOG0994 Extracellular matrix g 41.5 9.5E+02 0.021 31.5 23.5 70 387-456 1547-1616(1758)
166 PF10212 TTKRSYEDQ: Predicted 41.4 6.2E+02 0.013 29.9 14.3 94 404-525 421-514 (518)
167 PF05483 SCP-1: Synaptonemal c 41.3 7.6E+02 0.016 30.3 27.1 20 578-605 685-704 (786)
168 COG0419 SbcC ATPase involved i 41.1 7.7E+02 0.017 30.3 28.1 224 386-641 229-473 (908)
169 COG4026 Uncharacterized protei 41.0 4.1E+02 0.0088 28.5 11.7 39 499-537 157-195 (290)
170 PF07058 Myosin_HC-like: Myosi 40.9 5.5E+02 0.012 28.6 15.0 44 515-558 118-161 (351)
171 PRK11281 hypothetical protein; 40.7 9.1E+02 0.02 31.0 18.8 56 394-449 126-181 (1113)
172 PF15397 DUF4618: Domain of un 40.6 5E+02 0.011 28.0 17.5 136 98-262 77-224 (258)
173 PF05266 DUF724: Protein of un 40.3 4E+02 0.0087 27.1 11.4 78 386-463 100-184 (190)
174 KOG1265 Phospholipase C [Lipid 40.0 8.9E+02 0.019 30.8 17.8 100 51-157 1020-1137(1189)
175 PF09728 Taxilin: Myosin-like 39.6 5.3E+02 0.011 28.0 26.1 159 389-554 22-195 (309)
176 PF12777 MT: Microtubule-bindi 39.1 1.1E+02 0.0024 33.1 7.9 64 386-449 218-281 (344)
177 PF13514 AAA_27: AAA domain 38.8 9E+02 0.02 30.5 28.2 37 94-130 173-209 (1111)
178 PF10186 Atg14: UV radiation r 38.7 4.4E+02 0.0096 26.8 16.6 25 131-155 24-48 (302)
179 PF15254 CCDC14: Coiled-coil d 38.0 4.3E+02 0.0094 32.6 12.7 67 148-219 472-538 (861)
180 PF10304 DUF2411: Domain of un 37.9 24 0.00051 26.9 1.8 23 75-97 14-36 (36)
181 PF01920 Prefoldin_2: Prefoldi 37.6 2.8E+02 0.006 24.2 11.1 31 507-537 64-94 (106)
182 PF10191 COG7: Golgi complex c 36.8 1.8E+02 0.004 35.2 9.8 94 513-607 71-164 (766)
183 PF09787 Golgin_A5: Golgin sub 36.7 7.1E+02 0.015 28.7 18.1 179 58-258 153-343 (511)
184 TIGR02680 conserved hypothetic 36.3 1.1E+03 0.024 30.7 27.2 25 247-271 560-584 (1353)
185 PF09731 Mitofilin: Mitochondr 36.1 7.3E+02 0.016 28.6 20.1 135 391-561 253-399 (582)
186 PF10146 zf-C4H2: Zinc finger- 35.6 5.5E+02 0.012 27.0 14.4 39 437-475 31-69 (230)
187 TIGR02971 heterocyst_DevB ABC 34.4 5.7E+02 0.012 26.8 18.4 68 389-456 55-122 (327)
188 cd00632 Prefoldin_beta Prefold 34.0 3.3E+02 0.0071 24.5 8.9 58 387-444 11-104 (105)
189 KOG4593 Mitotic checkpoint pro 33.8 9.7E+02 0.021 29.4 25.1 56 394-449 60-119 (716)
190 COG1842 PspA Phage shock prote 33.2 5.9E+02 0.013 26.6 19.8 59 377-435 19-77 (225)
191 PF05622 HOOK: HOOK protein; 32.9 14 0.00031 43.5 0.0 22 511-532 383-404 (713)
192 PF05667 DUF812: Protein of un 32.8 9.2E+02 0.02 28.8 25.7 52 386-437 325-376 (594)
193 KOG0288 WD40 repeat protein Ti 32.6 8.4E+02 0.018 28.3 13.6 58 397-454 7-71 (459)
194 KOG4360 Uncharacterized coiled 32.5 9.2E+02 0.02 28.7 17.5 137 386-526 156-303 (596)
195 PF04201 TPD52: Tumour protein 31.7 1.2E+02 0.0025 30.6 5.9 39 409-447 28-66 (162)
196 PF09744 Jnk-SapK_ap_N: JNK_SA 31.5 4.9E+02 0.011 25.9 10.2 86 507-621 38-123 (158)
197 PF13094 CENP-Q: CENP-Q, a CEN 31.4 3.6E+02 0.0078 25.9 9.2 55 507-561 29-83 (160)
198 PRK02119 hypothetical protein; 31.2 2.9E+02 0.0062 24.1 7.6 55 390-444 3-57 (73)
199 COG3883 Uncharacterized protei 30.7 7.2E+02 0.016 26.9 21.1 46 390-435 53-98 (265)
200 PF01093 Clusterin: Clusterin; 30.7 3.3E+02 0.0071 31.3 9.9 72 383-457 10-81 (436)
201 TIGR02977 phageshock_pspA phag 30.6 5.9E+02 0.013 25.9 17.8 56 388-446 12-67 (219)
202 TIGR02680 conserved hypothetic 30.6 1.3E+03 0.029 30.0 27.6 42 495-536 879-920 (1353)
203 KOG0288 WD40 repeat protein Ti 30.2 9.2E+02 0.02 28.0 13.1 53 431-483 6-58 (459)
204 KOG0946 ER-Golgi vesicle-tethe 29.7 1.2E+03 0.027 29.3 23.3 105 507-614 808-938 (970)
205 TIGR03007 pepcterm_ChnLen poly 29.3 8.5E+02 0.018 27.3 20.2 29 506-534 318-346 (498)
206 PF07106 TBPIP: Tat binding pr 28.9 2.8E+02 0.006 26.9 8.0 64 388-451 71-136 (169)
207 PF06818 Fez1: Fez1; InterPro 28.7 6.9E+02 0.015 26.1 14.1 135 408-588 15-173 (202)
208 PF12808 Mto2_bdg: Micro-tubul 28.2 1.8E+02 0.0039 24.2 5.6 45 171-216 5-49 (52)
209 PF10267 Tmemb_cc2: Predicted 28.1 9.4E+02 0.02 27.4 15.3 16 249-264 70-85 (395)
210 PRK10929 putative mechanosensi 28.1 1.4E+03 0.03 29.5 19.9 37 487-523 197-233 (1109)
211 PF07716 bZIP_2: Basic region 28.1 1.4E+02 0.003 24.0 4.9 30 505-534 25-54 (54)
212 PF11932 DUF3450: Protein of u 28.0 6.8E+02 0.015 25.8 12.7 64 406-469 52-115 (251)
213 PF10146 zf-C4H2: Zinc finger- 27.9 7.3E+02 0.016 26.1 13.9 63 499-561 40-102 (230)
214 PF10186 Atg14: UV radiation r 27.8 6.6E+02 0.014 25.6 17.7 28 510-537 117-144 (302)
215 PF03670 UPF0184: Uncharacteri 27.6 1.5E+02 0.0033 26.8 5.5 49 101-149 25-73 (83)
216 TIGR00998 8a0101 efflux pump m 27.6 7.3E+02 0.016 25.9 15.9 57 386-442 77-133 (334)
217 PRK10636 putative ABC transpor 27.1 2.8E+02 0.006 32.6 9.0 31 391-421 558-588 (638)
218 TIGR01010 BexC_CtrB_KpsE polys 27.0 8.2E+02 0.018 26.4 14.5 31 416-446 169-199 (362)
219 PF02994 Transposase_22: L1 tr 26.8 1.6E+02 0.0035 32.5 6.7 51 510-560 142-192 (370)
220 COG4942 Membrane-bound metallo 26.8 1E+03 0.022 27.4 26.0 70 385-454 41-110 (420)
221 KOG0250 DNA repair protein RAD 26.8 1.5E+03 0.032 29.2 48.5 65 104-168 276-346 (1074)
222 PF09738 DUF2051: Double stran 26.4 6.9E+02 0.015 27.4 11.1 58 390-447 106-163 (302)
223 KOG1655 Protein involved in va 26.3 73 0.0016 33.1 3.6 29 241-269 28-57 (218)
224 PF04912 Dynamitin: Dynamitin 25.7 9.3E+02 0.02 26.6 18.9 26 199-224 90-115 (388)
225 KOG0978 E3 ubiquitin ligase in 25.1 1.3E+03 0.029 28.2 25.8 16 387-402 398-413 (698)
226 PF05546 She9_MDM33: She9 / Md 25.1 8.2E+02 0.018 25.7 11.4 51 404-454 33-83 (207)
227 PF14073 Cep57_CLD: Centrosome 24.7 7.7E+02 0.017 25.3 17.6 28 394-421 2-29 (178)
228 TIGR02231 conserved hypothetic 24.4 5.3E+02 0.011 29.4 10.4 21 196-216 152-172 (525)
229 TIGR02894 DNA_bind_RsfA transc 24.4 3.9E+02 0.0086 27.0 8.1 58 504-561 96-153 (161)
230 KOG0978 E3 ubiquitin ligase in 24.3 1.4E+03 0.03 28.1 24.3 54 507-560 568-621 (698)
231 PF10224 DUF2205: Predicted co 24.1 2.5E+02 0.0055 25.2 6.1 42 165-218 18-59 (80)
232 PF13514 AAA_27: AAA domain 23.9 1.5E+03 0.033 28.5 21.6 34 98-131 739-772 (1111)
233 PF10498 IFT57: Intra-flagella 23.9 1E+03 0.023 26.5 16.6 27 507-533 330-356 (359)
234 PF14193 DUF4315: Domain of un 23.8 1.4E+02 0.0029 26.9 4.4 30 387-416 6-35 (83)
235 PF00170 bZIP_1: bZIP transcri 23.8 4.1E+02 0.009 21.8 8.0 28 508-535 29-56 (64)
236 smart00030 CLb CLUSTERIN Beta 23.3 6.4E+02 0.014 26.4 9.6 71 383-456 16-86 (206)
237 KOG4001 Axonemal dynein light 23.2 5.5E+02 0.012 27.2 9.2 78 132-214 173-253 (259)
238 KOG3650 Predicted coiled-coil 23.2 1.9E+02 0.0042 27.3 5.4 26 192-217 73-98 (120)
239 PF04102 SlyX: SlyX; InterPro 23.2 3.9E+02 0.0084 22.8 6.9 49 396-444 4-52 (69)
240 TIGR02894 DNA_bind_RsfA transc 22.9 4.6E+02 0.01 26.5 8.3 51 385-435 100-150 (161)
241 PF10168 Nup88: Nuclear pore c 22.6 1.5E+03 0.032 27.7 20.7 79 390-475 537-616 (717)
242 COG1382 GimC Prefoldin, chaper 22.4 7.1E+02 0.015 24.0 10.1 34 103-136 14-47 (119)
243 PF07716 bZIP_2: Basic region 22.4 1.3E+02 0.0029 24.1 3.8 27 192-218 28-54 (54)
244 PF05308 Mito_fiss_reg: Mitoch 22.4 77 0.0017 33.6 3.1 30 237-266 114-143 (253)
245 PF13870 DUF4201: Domain of un 22.4 7.3E+02 0.016 24.2 20.4 149 387-535 11-175 (177)
246 smart00338 BRLZ basic region l 22.1 2E+02 0.0044 23.6 4.9 31 507-537 28-58 (65)
247 COG1340 Uncharacterized archae 22.0 1.1E+03 0.023 26.0 20.6 143 387-537 18-190 (294)
248 PF11559 ADIP: Afadin- and alp 21.8 6.9E+02 0.015 23.7 17.5 19 510-528 131-149 (151)
249 PF06428 Sec2p: GDP/GTP exchan 21.7 5.3E+02 0.011 23.9 7.9 52 395-446 7-59 (100)
250 PF08232 Striatin: Striatin fa 21.7 2.2E+02 0.0048 27.3 5.7 37 505-541 32-68 (134)
251 COG2433 Uncharacterized conser 21.6 1.2E+03 0.025 28.4 12.3 62 199-265 453-515 (652)
252 KOG3863 bZIP transcription fac 21.6 2.8E+02 0.0061 33.1 7.5 78 346-436 465-551 (604)
253 TIGR01000 bacteriocin_acc bact 21.5 1.2E+03 0.025 26.2 23.0 30 386-415 94-123 (457)
254 PF10211 Ax_dynein_light: Axon 21.3 6.2E+02 0.014 25.5 9.1 35 398-432 122-156 (189)
255 PF07798 DUF1640: Protein of u 21.0 8.1E+02 0.018 24.1 15.3 54 206-263 94-156 (177)
256 PF03179 V-ATPase_G: Vacuolar 20.8 6.1E+02 0.013 22.7 10.2 56 125-180 6-61 (105)
257 PF05010 TACC: Transforming ac 20.7 9.6E+02 0.021 24.9 22.9 109 492-611 77-185 (207)
258 PF09789 DUF2353: Uncharacteri 20.7 1.2E+03 0.026 25.9 13.4 40 191-230 128-167 (319)
259 COG5124 Protein predicted to b 20.5 8E+02 0.017 25.6 9.5 34 507-540 77-110 (209)
260 PF04799 Fzo_mitofusin: fzo-li 20.3 4.6E+02 0.0099 26.7 7.8 58 148-221 105-162 (171)
261 PF12761 End3: Actin cytoskele 20.2 7.8E+02 0.017 25.6 9.5 26 389-414 96-121 (195)
262 KOG4010 Coiled-coil protein TP 20.2 5.2E+02 0.011 27.0 8.2 62 409-470 43-106 (208)
263 KOG4403 Cell surface glycoprot 20.2 9.2E+02 0.02 28.2 10.8 33 390-422 260-292 (575)
No 1
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=100.00 E-value=1.2e-134 Score=1136.91 Aligned_cols=498 Identities=54% Similarity=0.714 Sum_probs=431.0
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 006305 79 KEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQN 158 (651)
Q Consensus 79 Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks 158 (651)
||||||||+|||||||+||||||+||++||+|||+++++++++||||+||||||||||||||+|||||||+|||||+++|
T Consensus 1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s 80 (769)
T PF05911_consen 1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS 80 (769)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHhhhHhhhhhh-----------------------HHHHHHHHHHHHhhhhhhHHHHHh
Q 006305 159 LEWESKKSELESKLVDLQKKLQTAKSEAAASAD-----------------------RDLCSKLEAAEKQNSALKLELLSL 215 (651)
Q Consensus 159 ~e~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~-----------------------~~L~~rLes~EKen~sLkyE~~~l 215 (651)
+||++++.+||.+|.+++++|.++++||+++.+ .+|+.||+++||||++|||||||+
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986654 589999999999999999999999
Q ss_pred hhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhhhcCCCCC------------------C---CCCC
Q 006305 216 VKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTE------------------N---KSFT 274 (651)
Q Consensus 216 ~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~rK~lp~~d------------------~---rs~~ 274 (651)
+|||+|||+||||++||||+|||||||||||||||||||||||+||||+||||. + |+..
T Consensus 161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~ 240 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS 240 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999983 1 2322
Q ss_pred C-Ccccc---cccCCCCCC---ccccccccccccc-------------------------cc------------------
Q 006305 275 P-SSIYV---GSFTDSQSD---NGERLLGNETDNC-------------------------KI------------------ 304 (651)
Q Consensus 275 ~-ss~~~---~s~~d~~sd---~~erL~~~E~e~~-------------------------k~------------------ 304 (651)
+ ++++. .+++.++.+ +++||++||+||+ |+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~ 320 (769)
T PF05911_consen 241 RPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELS 320 (769)
T ss_pred cccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 2 22222 222232222 3799999999973 11
Q ss_pred ------------Ccc-ccccCCCCCCCchhhhccCCCc--ccccccCCcc--cCCccccccchhHHHHHHhhcCCCCCCC
Q 006305 305 ------------SDS-EVNECEPNSSTSWASALAIEPD--KNVKAVGRNV--MVPSVDINLMDDFLEMERLAALPDTESR 367 (651)
Q Consensus 305 ------------s~~-~~~d~~~scsdSWAsALisELd--k~~k~~~~~~--~~~s~di~LMDDFlEMEkLA~l~~~~~~ 367 (651)
|.+ +++||++||||||||||||||| |++|.++++. +..++||+|||||||||||||+|.+.++
T Consensus 321 ~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~~~~~ 400 (769)
T PF05911_consen 321 SSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSRDSSS 400 (769)
T ss_pred cccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCCCCCC
Confidence 122 3579999999999999999999 7888766654 5667899999999999999999976554
Q ss_pred Cccc-cCCCCCCCCC-----------ccc-------------------------------------------------c-
Q 006305 368 SFCV-EVGPASDQPN-----------ADE-------------------------------------------------S- 385 (651)
Q Consensus 368 ~~~~-~~~~~~d~~~-----------~~~-------------------------------------------------~- 385 (651)
+++. ....+.+..+ ... .
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al~~~~~~~~~~~~~ 480 (769)
T PF05911_consen 401 PSSCSSSEVDSDSSVTLESSSKRESVLESDKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIALDSINNSSNCDDDS 480 (769)
T ss_pred CCCCCCccccccccccccccccccccccchhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccccccccc
Confidence 4332 2122111110 000 0
Q ss_pred -c-------hH----------HHH--------------------------------------------------------
Q 006305 386 -S-------IK----------AEL-------------------------------------------------------- 391 (651)
Q Consensus 386 -s-------l~----------~El-------------------------------------------------------- 391 (651)
. +. .++
T Consensus 481 ~~~~~~~~sL~e~~~s~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~ 560 (769)
T PF05911_consen 481 EEYESMEASLVEESKSMIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVS 560 (769)
T ss_pred chhhhhhhhHHHHHHHHHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 0 00 011
Q ss_pred ------------------------HHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 392 ------------------------EVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447 (651)
Q Consensus 392 ------------------------e~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL 447 (651)
++.....+.++++|++|+++|.+|++.|.+|+++|+.++.+|++++++|++||++
T Consensus 561 s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e- 639 (769)
T PF05911_consen 561 SMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE- 639 (769)
T ss_pred HHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1122256778999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006305 448 AFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK 527 (651)
Q Consensus 448 ~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~K 527 (651)
|..+++|++.+++||+|++++|+.+++|+..+++|++.|..|
T Consensus 640 --------------------------------------L~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~K 681 (769)
T PF05911_consen 640 --------------------------------------LESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSK 681 (769)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 777777779999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHH
Q 006305 528 VISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLG 607 (651)
Q Consensus 528 i~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLG 607 (651)
|++|++||++||++|+|+.+||++||+||+|+++ +..++..+ +.|+|+|||||||+||+|||||||||++||
T Consensus 682 i~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~------~~~~~~~~--~~~~k~kqe~EiaaAA~KLAECQeTI~sLG 753 (769)
T PF05911_consen 682 ISSLEEELEKERALSEELEAKCRELEEELERMKK------EESLQQLA--NEDKKIKQEKEIAAAAEKLAECQETIASLG 753 (769)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc------ccchhhcc--ccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997 44444444 999999999999999999999999999999
Q ss_pred HhhhhcccccccccCC
Q 006305 608 RQLRSLVTLDDFLIDS 623 (651)
Q Consensus 608 rQLKSLa~ledfl~d~ 623 (651)
||||||||++||++|+
T Consensus 754 kQLksLa~~~d~~~ds 769 (769)
T PF05911_consen 754 KQLKSLATPEDFLLDS 769 (769)
T ss_pred HHHHhcCChhhhhccC
Confidence 9999999999999985
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.34 E-value=0.016 Score=68.31 Aligned_cols=65 Identities=28% Similarity=0.419 Sum_probs=28.3
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANK 452 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ane 452 (651)
..+++.+..++..++.++..++.+...++..+..++.+++..+..+...+..+..++.++..+..
T Consensus 676 ~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1179)
T TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433333333333333333333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.34 E-value=0.017 Score=68.48 Aligned_cols=50 Identities=30% Similarity=0.418 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAE 437 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE 437 (651)
+.++..+..++..++..++.+..+...++..+..++..+......+..+.
T Consensus 673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~ 722 (1164)
T TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE 722 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555565555555555555555555555555444444433333333333
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.14 E-value=0.053 Score=66.32 Aligned_cols=61 Identities=39% Similarity=0.478 Sum_probs=35.9
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA 450 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~a 450 (651)
++..+..++..++..+++...+-..+...+..+...+...+.++..+...+..+..++..+
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666666666666665555555555555555555555555433
No 5
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.08 E-value=0.049 Score=63.88 Aligned_cols=57 Identities=35% Similarity=0.452 Sum_probs=53.6
Q ss_pred HhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305 396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANK 452 (651)
Q Consensus 396 ~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ane 452 (651)
+.+..|+..|..++.||..|-..|.++|.+|+.++..|.+...++..|-.+++....
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999999999999999999999999999999888766
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.93 E-value=0.17 Score=64.80 Aligned_cols=197 Identities=23% Similarity=0.369 Sum_probs=113.5
Q ss_pred HHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---
Q 006305 407 NMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK--- 483 (651)
Q Consensus 407 KleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~--- 483 (651)
||+++-.+|++.|..++.......-+++-...-+-+||.+++.+.-+...+..++. .+++|+..+++|+.
T Consensus 1608 kle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~-------~aerr~~~l~~E~eeL~ 1680 (1930)
T KOG0161|consen 1608 KLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLA-------EAERRLAALQAELEELR 1680 (1930)
T ss_pred hhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 78888899999999998888888888888888888888888887777765554443 45677777777644
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHH
Q 006305 484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563 (651)
Q Consensus 484 ~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~ 563 (651)
.-|..+...+..|+.++--..+-...+=++...+-.+=..|..+|..|+.+++.+=....-+.-+.++..-+..++..++
T Consensus 1681 ~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el 1760 (1930)
T KOG0161|consen 1681 EKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEEL 1760 (1930)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Confidence 44666666666555555433332222222222222222233333444444444443333333334444444444443322
Q ss_pred HHHHHH------HHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhhhhc
Q 006305 564 ELQHEV------KLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSL 613 (651)
Q Consensus 564 ~~~~e~------~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQLKSL 613 (651)
...|+. .-......++|++++=. |+-.||-+-.. ++|+-|-.+...|
T Consensus 1761 ~~Eq~~~~~le~~k~~LE~~~kdLq~rL~-e~E~~a~~~~k--~~i~~Learir~L 1813 (1930)
T KOG0161|consen 1761 RKEQETSQKLERLKKSLERQVKDLQLRLD-EAEQAALKGGK--KQIAKLEARIREL 1813 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhccH--HHHHHHHHHHHHH
Confidence 222222 22234456778877776 77777755554 6677666665544
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.87 E-value=0.0059 Score=61.98 Aligned_cols=216 Identities=24% Similarity=0.345 Sum_probs=129.4
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~ 465 (651)
.++.+++.+..++..++.+|+.........+..+.-.++.+......|.-++.+|...+..|..+......++-.+..++
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE 84 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777666666666666666666666655555555555555556565555555555555555555
Q ss_pred HhhhhhhhhhhhHHHHHHH---HHHHHHHhH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006305 466 AARGVAESKLSVVEAEMKT---QLALANKSK-------QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV 535 (651)
Q Consensus 466 ~~~~~~e~kl~~lE~Ei~~---eL~la~~s~-------~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Ei 535 (651)
......+.|+..||..++. .+.-+..-+ ...+..|..+.++...+|+++..++.++..+.+.+.+|+.-.
T Consensus 85 ~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 85 NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555556666665554332 222222112 234455556667788888888888888888888888887554
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHH
Q 006305 536 EKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASL 606 (651)
Q Consensus 536 ekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasL 606 (651)
.+==.--..+..+++.|.++|......++. -|..+........+ -|.+|...=.++..+++++...
T Consensus 165 ~~~~~re~~~e~~i~~L~~~lkeaE~Rae~-aE~~v~~Le~~id~----le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 165 EKASEREDEYEEKIRDLEEKLKEAENRAEF-AERRVKKLEKEIDR----LEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 422222266777888888888776653322 12222222222222 2346666667777777776543
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.67 E-value=0.24 Score=58.92 Aligned_cols=66 Identities=21% Similarity=0.375 Sum_probs=36.8
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFAN 451 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~an 451 (651)
.+..+++.+..++..++..+..++.+...++..+..+...+.....++..++..+..+..++....
T Consensus 678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~ 743 (1164)
T TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666555555555555555555555444444444444444433
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=97.57 E-value=0.31 Score=57.42 Aligned_cols=208 Identities=24% Similarity=0.266 Sum_probs=99.4
Q ss_pred HHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 006305 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAES 473 (651)
Q Consensus 394 ~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~ 473 (651)
+..++..++.+++.++.+...++..+..++..++.+-..+...+..+.+++.+++.++.....++..+.........+..
T Consensus 368 l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 447 (880)
T PRK02224 368 LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA 447 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555444444334455555555555555555554444443333222222111111
Q ss_pred ----hhhh--------HH-----HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 474 ----KLSV--------VE-----AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 474 ----kl~~--------lE-----~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
-.|- .+ .++...+.-........+.+|..++..+..++..+. .+.++..+..+++.++..++
T Consensus 448 ~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~-~~~~l~~l~~~~~~l~~~~~ 526 (880)
T PRK02224 448 LLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIA 526 (880)
T ss_pred HHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 1110 00 012222222222333444455555555555555433 35566666666666666666
Q ss_pred HHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhhhhcc
Q 006305 537 KERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLV 614 (651)
Q Consensus 537 kER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQLKSLa 614 (651)
.-+..-++...+|..|++++......+ .-+.. -.-.-+.++..+..++.+|.+.+..|-.+|..|-
T Consensus 527 ~~~e~le~~~~~~~~l~~e~~~l~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 527 ERRETIEEKRERAEELRERAAELEAEA------EEKRE------AAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666777777777776664321 11110 0011233445555667777777777766666665
No 10
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.57 E-value=0.014 Score=59.24 Aligned_cols=156 Identities=32% Similarity=0.398 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhh-------hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEK-------SELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV-- 457 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK-------~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~-- 457 (651)
...|+..+..++..|+..|++.+.-- .+++..+.++.+.+....++....+.++..|..+|..+...-..+
T Consensus 34 aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~ 113 (237)
T PF00261_consen 34 AEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAER 113 (237)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777776655433 333444444555555556666666666666666666554444433
Q ss_pred ------------HHHHHHHHHhhhhhhhhhhhHHHHHHH------HHHHH----HHhHHHHHHHHHHHHhhHHHHHHHHH
Q 006305 458 ------------EVEMKAAIAARGVAESKLSVVEAEMKT------QLALA----NKSKQAAEEEVKSAKSKKEAAESRLR 515 (651)
Q Consensus 458 ------------E~el~a~~~~~~~~e~kl~~lE~Ei~~------eL~la----~~s~~~a~eelk~~~~k~~~lEs~l~ 515 (651)
+..+..++.....+++++.-|+.++.. .|..+ +.--...++.|+.+..+++.+|.|..
T Consensus 114 k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae 193 (237)
T PF00261_consen 114 KYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAE 193 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334455555555555431 12221 11123556678899999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 006305 516 AVEAEMETLRSKVISLEDEVEKERALS 542 (651)
Q Consensus 516 ~~eaE~~~L~~Ki~~Le~EiekER~~s 542 (651)
.++..+..|...|+.|+.+|..++.-+
T Consensus 194 ~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 194 FAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888643
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=97.47 E-value=0.41 Score=56.39 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=14.3
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhh
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMD 418 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEma 418 (651)
..+..+..++.+|+..++.++..+..++..
T Consensus 475 ~~~~~~~~~~~~le~~l~~~~~~~e~l~~~ 504 (880)
T PRK02224 475 ERVEELEAELEDLEEEVEEVEERLERAEDL 504 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544444433
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.44 E-value=0.6 Score=57.49 Aligned_cols=80 Identities=25% Similarity=0.307 Sum_probs=54.2
Q ss_pred hhHhhHhHHHHHHHhhcchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhcchhhHH
Q 006305 60 DSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK-------NSALENRVSHLDGAL 132 (651)
Q Consensus 60 ~~vk~LneKLs~al~~~~~Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~-------~~~~edrvshLD~AL 132 (651)
..++.++.+|...-.+++.....+..+..--.++-..++..+.++..+...+...... ...++..+.++..-+
T Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788888888877777777777777788788888888888777777766322 223445555555555
Q ss_pred HHHHHHH
Q 006305 133 KECVRQL 139 (651)
Q Consensus 133 KECmrQL 139 (651)
+....++
T Consensus 312 ~~~~~~~ 318 (1163)
T COG1196 312 EELENEL 318 (1163)
T ss_pred HHHHHHH
Confidence 5555443
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.27 E-value=1.2 Score=57.49 Aligned_cols=129 Identities=30% Similarity=0.348 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HH
Q 006305 481 EMKTQLALANKSKQAAEEEVKS---------------------AKSKKEAAESRLRAVEAEMETLRSKVISLEDE---VE 536 (651)
Q Consensus 481 Ei~~eL~la~~s~~~a~eelk~---------------------~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E---ie 536 (651)
||...|..||+-+..+.-+|+- +.+.+..+|-++..+++|+..|+.++..++.. .+
T Consensus 1615 elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE 1694 (1930)
T KOG0161|consen 1615 ELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAE 1694 (1930)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455577777776655555531 23558889999999999999999998887643 22
Q ss_pred HHHhhcHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHH
Q 006305 537 KERALSEE-----------NIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIAS 605 (651)
Q Consensus 537 kER~~s~E-----------~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIas 605 (651)
-|+.-..| ....=++||.+|.....+++-.+.. .. ...|.--|=..+++..+..|+.=|.|+.-
T Consensus 1695 ~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~----~~-~~~Er~kka~~~a~~~~~el~~Eq~~~~~ 1769 (1930)
T KOG0161|consen 1695 LELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSE----LR-AAEERAKKAQADAAKLAEELRKEQETSQK 1769 (1930)
T ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHH----HH-hhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22222222 2234467888888887654321111 11 12222222235778888999999999998
Q ss_pred HHHhhhhcc
Q 006305 606 LGRQLRSLV 614 (651)
Q Consensus 606 LGrQLKSLa 614 (651)
|-++.|+|-
T Consensus 1770 le~~k~~LE 1778 (1930)
T KOG0161|consen 1770 LERLKKSLE 1778 (1930)
T ss_pred HHHHHHHHH
Confidence 888888774
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.27 E-value=0.72 Score=54.74 Aligned_cols=73 Identities=29% Similarity=0.394 Sum_probs=37.7
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM 461 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el 461 (651)
.++..+..++..++..++.+..+...++..+..++.+++..+.++..++..+..++.++.........++.++
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555555555555555555444444444333
No 15
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.27 E-value=0.045 Score=52.39 Aligned_cols=86 Identities=22% Similarity=0.374 Sum_probs=65.2
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~ 465 (651)
.|++|.+.++.+...++.++..++.+-..++..+.-.+..+..+..+|-.++..|.+++..+.........++
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E------- 76 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE------- 76 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-------
Confidence 5889999999999999999999999988888888877777777777777777777777777666555443332
Q ss_pred HhhhhhhhhhhhHHHHH
Q 006305 466 AARGVAESKLSVVEAEM 482 (651)
Q Consensus 466 ~~~~~~e~kl~~lE~Ei 482 (651)
.+.+||.+||.++
T Consensus 77 ----~l~rriq~LEeel 89 (143)
T PF12718_consen 77 ----QLNRRIQLLEEEL 89 (143)
T ss_pred ----HHHhhHHHHHHHH
Confidence 5667776666653
No 16
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.89 E-value=2.5 Score=54.35 Aligned_cols=476 Identities=20% Similarity=0.262 Sum_probs=254.9
Q ss_pred hhhhHhhHhHHHHHHHhhcchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhH---HHH
Q 006305 58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGA---LKE 134 (651)
Q Consensus 58 ~~~~vk~LneKLs~al~~~~~Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~A---LKE 134 (651)
+...|+.|+.-|.....+.+..+. ..+|.+ .+..-|+..++.+|+...-...-+.+|..-|-.. +|.
T Consensus 634 ~e~~l~qLe~~le~~~~E~~~~~~-------~l~e~~---~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~ 703 (1822)
T KOG4674|consen 634 KEKRLRQLENELESYKKEKRENLK-------KLQEDF---DSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKE 703 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999987777766543 334444 3456688899999988887777777887776654 455
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHH---HHHHHHHHHHHHHhhhHhhhhh--hHHHHHHHHHHHHhhhhhh
Q 006305 135 CVRQLRQAREEQEQRIQETVSKQNLEWESKKSEL---ESKLVDLQKKLQTAKSEAAASA--DRDLCSKLEAAEKQNSALK 209 (651)
Q Consensus 135 CmrQLr~~rEEqEqki~dav~kks~e~e~~~~el---E~kl~e~~~~L~~a~~e~~a~~--~~~L~~rLes~EKen~sLk 209 (651)
=|-.|+ ++-+.++..|.+.=+....+..+| ..++.-+...+...+.|+.... ..-|..-++++ ...+
T Consensus 704 e~~tL~----er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l----~~e~ 775 (1822)
T KOG4674|consen 704 EVETLE----ERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKL----SAEQ 775 (1822)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 555554 677778888777654444444444 4455555555555555554322 12344444444 4456
Q ss_pred HHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccCCCCCC
Q 006305 210 LELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSD 289 (651)
Q Consensus 210 yE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~rK~lp~~d~rs~~~ss~~~~s~~d~~sd 289 (651)
|.++.+-..|++=..+++.+ ++|-|+-++ .+|-.|+-+.++|+.=...... +.| +++.+.
T Consensus 776 ~~L~~~l~~lQt~~~~~e~s----~~~~k~~~e--~~i~eL~~el~~lk~klq~~~~--~~r----------~l~~~~-- 835 (1822)
T KOG4674|consen 776 ESLQLLLDNLQTQKNELEES----EMATKDKCE--SRIKELERELQKLKKKLQEKSS--DLR----------ELTNSL-- 835 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HHH----------HHHhhh--
Confidence 66777777777777777665 577788888 7889999999998765443221 111 111110
Q ss_pred cccccccccccccccCccccccCCCCCCCchhhhccCCCcccccccCCcccCCccccccc-hhHHHHHHhhcCCCCCCCC
Q 006305 290 NGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLM-DDFLEMERLAALPDTESRS 368 (651)
Q Consensus 290 ~~erL~~~E~e~~k~s~~~~~d~~~scsdSWAsALisELdk~~k~~~~~~~~~s~di~LM-DDFlEMEkLA~l~~~~~~~ 368 (651)
+..--||..+|.++...-...........++|+-| --.-+|++=-.......
T Consensus 836 -------------------------~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~-- 888 (1822)
T KOG4674|consen 836 -------------------------EKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQL-- 888 (1822)
T ss_pred -------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--
Confidence 11223444444433311000000000001111111 11112221111100000
Q ss_pred ccccCCCCCCCCCccccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 369 FCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA 448 (651)
Q Consensus 369 ~~~~~~~~~d~~~~~~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~ 448 (651)
...+.+ ..+-++.-+...|++...+-..|...|..+..++...+...+-+++-|..+...++
T Consensus 889 ~~l~~~------------------~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~ld 950 (1822)
T KOG4674|consen 889 LNLDSK------------------SSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELD 950 (1822)
T ss_pred hhcccc------------------chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00001111122222222222233333444444455555555556666555555544
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---HHHHHHHHhHH----HHHHHHHHHH-------hhHHHHHHHH
Q 006305 449 FANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK---TQLALANKSKQ----AAEEEVKSAK-------SKKEAAESRL 514 (651)
Q Consensus 449 ~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~---~eL~la~~s~~----~a~eelk~~~-------~k~~~lEs~l 514 (651)
... ..++.+++.-......++.+|+.|+.+|. .++.++.+..+ .+..+|.++. .....+...+
T Consensus 951 e~~---~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~ 1027 (1822)
T KOG4674|consen 951 ETR---LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQI 1027 (1822)
T ss_pred HHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 433 44455555555556666666666666544 33444444332 2233344433 3344555666
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHH--hhhcCcchhhhhhHHHHHH
Q 006305 515 RAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIEL-QHEVKLQ--YLAGSNQELKINQEEELAV 591 (651)
Q Consensus 515 ~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~-~~e~~~~--~~~~~n~dlKiKQEkELA~ 591 (651)
..+...+.+....+...+..-+.|=..|.+...++.+|.+++..+..++.- --..... .......+...++. -|-
T Consensus 1028 ~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~-~Le- 1105 (1822)
T KOG4674|consen 1028 EDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKED-ALE- 1105 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHH-HHH-
Confidence 666777777777788889999999999999999999999999988854321 0000011 12222333333322 111
Q ss_pred HhhhhHHHHHHHHHHHHhhhhcccccccccCC
Q 006305 592 AASKFAECQKTIASLGRQLRSLVTLDDFLIDS 623 (651)
Q Consensus 592 AA~KLAECQkTIasLGrQLKSLa~ledfl~d~ 623 (651)
.-+..|=+-|++|-.|.+.|-++=+-+.++
T Consensus 1106 --qe~~~~~~~~~~L~~qNslLh~qie~~s~~ 1135 (1822)
T KOG4674|consen 1106 --QEVNELKKRIESLEKQNSLLHDQFEELSQQ 1135 (1822)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 336778888999999999997665544443
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.74 E-value=2.7 Score=52.57 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------HHHhhhhhhhhhhhHHHHHHHHHHHHHHhHH
Q 006305 421 ESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA------AIAARGVAESKLSVVEAEMKTQLALANKSKQ 494 (651)
Q Consensus 421 e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a------~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~ 494 (651)
.++.++......+...+..++++...+.........++.=+.. +..+...++.+|..++.++..--. ..+..
T Consensus 748 ~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~--~~s~~ 825 (1311)
T TIGR00606 748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL--DRTVQ 825 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cCCHH
Confidence 3444444444444444444444444444444444444331111 122233444555444443331100 12334
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHH
Q 006305 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISL---EDEVEKERALSEENIANFQKSKDELSKVKQEIE 564 (651)
Q Consensus 495 ~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~L---e~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~ 564 (651)
..+.+|......+..+...+..+..+...+..+|..| ..++..++.--.+.+.+..+|+++|...+.+..
T Consensus 826 ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~ 898 (1311)
T TIGR00606 826 QVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQ 898 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777777777777777777777777777 666777777767777788888888888876543
No 18
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.62 E-value=1.1 Score=46.54 Aligned_cols=68 Identities=21% Similarity=0.368 Sum_probs=48.3
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKS 453 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneS 453 (651)
.+..++..+...+.++..+++...+....++..+..++..++.....-...++++.-|+.+|+.....
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~ 139 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh
Confidence 44556666667777777777777777777777777777777777777777777777777777664433
No 19
>PRK11637 AmiB activator; Provisional
Probab=96.54 E-value=1.4 Score=48.40 Aligned_cols=68 Identities=18% Similarity=0.354 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELEM-------DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSK 454 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEm-------aL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk 454 (651)
+..++..+..++..++.++..+..+..+++. .|...+.+|.....++..++..+..++.++...+...
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444444444 4444444444444455555555555555544444443
No 20
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.48 E-value=3 Score=49.91 Aligned_cols=153 Identities=27% Similarity=0.349 Sum_probs=107.1
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~ 465 (651)
.+..+++.+......|+..+.+.......+.+.|.+....|...+.+|.-+...-..+..|+.....++..++.++..++
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e 672 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLE 672 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45668888888888888878777777777788888888888888888887777777788888888888888888888888
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcH--
Q 006305 466 AARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSE-- 543 (651)
Q Consensus 466 ~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~-- 543 (651)
++.+++-.|++.|++||.++-.+..+.- .++..||-++.....+....... .=+-.+.+|+.++.
T Consensus 673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~-----------~kc~~Le~el~r~~~~~~~~~~~--~~~~k~kqe~EiaaAA 739 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELEKERALSEELE-----------AKCRELEEELERMKKEESLQQLA--NEDKKIKQEKEIAAAA 739 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhh-----------hHHHHHHHHHHhhhcccchhhcc--ccccccchHHHHHHHH
Confidence 8999999999999999988866544322 12334555555444432211111 22234555555554
Q ss_pred HHHHHHHH
Q 006305 544 ENIANFQK 551 (651)
Q Consensus 544 E~~aKc~~ 551 (651)
+=+|-|++
T Consensus 740 ~KLAECQe 747 (769)
T PF05911_consen 740 EKLAECQE 747 (769)
T ss_pred HHHHHHHH
Confidence 34788876
No 21
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.47 E-value=0.63 Score=54.84 Aligned_cols=218 Identities=24% Similarity=0.379 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcch---hhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhh-HHHHHHHHH
Q 006305 99 KAENELSTLKQQLKAASQKNSALENRVSHL---DGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKK-SELESKLVD 174 (651)
Q Consensus 99 KAe~E~~slK~qLe~~~~~~~~~edrvshL---D~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~-~elE~kl~e 174 (651)
+-|+|+..||..|-..-+.--.|..+++.| ++.||.|+.|||+--|+-+-||+..+..+ +-|+-- ..||.+|.+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR--q~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQAR--QQDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 789999999999999999988888896665 46799999999999999999999998854 444322 557888877
Q ss_pred HHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhH----------HhHHhH
Q 006305 175 LQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASK----------QHLESI 244 (651)
Q Consensus 175 ~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asK----------QhlEsv 244 (651)
.+..-.. +|++....| .-.+++.++|.+ -.-|..
T Consensus 500 E~~~R~~-------------------lEkQL~eEr-----------------k~r~~ee~~aar~~~~~~~~r~e~~e~~ 543 (697)
T PF09726_consen 500 ERRQRAS-------------------LEKQLQEER-----------------KARKEEEEKAARALAQAQATRQECAESC 543 (697)
T ss_pred HHHHHHH-------------------HHHHHHHHH-----------------HHHhHHHHhhhhccccchhccchhHHHH
Confidence 5443221 122211111 111111111111 233444
Q ss_pred H-HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccCCCCCCcccccccccccccccCccccccCCCCCCCchhhh
Q 006305 245 K-KLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASA 323 (651)
Q Consensus 245 K-KiakLEaECqRLr~l~rK~lp~~d~rs~~~ss~~~~s~~d~~sd~~erL~~~E~e~~k~s~~~~~d~~~scsdSWAsA 323 (651)
| ++..||.||++||.=++.+ .+++..+|.+.
T Consensus 544 r~r~~~lE~E~~~lr~elk~k--------------------------ee~~~~~e~~~---------------------- 575 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQK--------------------------EEQIRELESEL---------------------- 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHH----------------------
Confidence 3 7899999999999876642 23333333111
Q ss_pred ccCCCcccccccCCcccCCccccccchhHHHHHHhhcCCCCCCCCccccCCCCCCCCCccccchHHHHHHHHHhHHhHHH
Q 006305 324 LAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEE 403 (651)
Q Consensus 324 LisELdk~~k~~~~~~~~~s~di~LMDDFlEMEkLA~l~~~~~~~~~~~~~~~~d~~~~~~~sl~~Ele~~~~q~~eLEe 403 (651)
.+|.+ |- .+ + ...-..|-..|-+|+-+..-||+
T Consensus 576 --~~lr~---------------------~~-------------------~e--~---~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 576 --QELRK---------------------YE-------------------KE--S---EKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred --HHHHH---------------------HH-------------------hh--h---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 00 0 00011344567777777777776
Q ss_pred HHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 404 ELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 404 KlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
-|--=--=|.+|=-+|-+++++|+....+++.-+..+.+|++.++.
T Consensus 609 sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 609 SLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6633223356688899999999999999999999999999998543
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.25 E-value=5.2 Score=50.19 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=14.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhc
Q 006305 588 ELAVAASKFAECQKTIASLGRQLRSL 613 (651)
Q Consensus 588 ELA~AA~KLAECQkTIasLGrQLKSL 613 (651)
+|....+-+.+||..|..+..++..|
T Consensus 978 el~~~~~~ie~le~e~~~l~~~i~~l 1003 (1311)
T TIGR00606 978 ELNTVNAQLEECEKHQEKINEDMRLM 1003 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666666666555544
No 23
>PRK09039 hypothetical protein; Validated
Probab=96.23 E-value=0.8 Score=49.51 Aligned_cols=138 Identities=14% Similarity=0.199 Sum_probs=95.2
Q ss_pred HHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 006305 404 ELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK 483 (651)
Q Consensus 404 KlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~ 483 (651)
.+...+.+-..|+..+...-+.|..-+.+...++..+.+|+.+++.++..+..++..+.........++.++..+..++.
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~ 126 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELD 126 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 44444555555555555556666777778888899999999999988888887777665433334567777777776666
Q ss_pred HHHHHHHHhH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 006305 484 TQLALANKSK---QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERAL 541 (651)
Q Consensus 484 ~eL~la~~s~---~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~ 541 (651)
.+.....+.+ ..+..||..+......|+..|..++........+|..|+.+|+.=.+.
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544443 455667777777777888888888888888888888888777654433
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.17 E-value=5.4 Score=49.67 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHh
Q 006305 192 RDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVV 261 (651)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~ 261 (651)
..+...++..++.+....-++......+..-..+..--++.=+.|..+.-.-=..+.++++.|..|..++
T Consensus 465 ~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 465 EEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555544444444444433332222222222233333222222256777888888776654
No 25
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=5.7 Score=48.75 Aligned_cols=222 Identities=25% Similarity=0.308 Sum_probs=116.0
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhh-------hhHHHhhHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Q 006305 387 IKAELEVLIHRTAELEEELENMRAE-------KSELEMDLKE---SQRRLET-----SQNQLKEAELKLEELETQLAFAN 451 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaE-------K~ELEmaL~e---~q~~Le~-----s~~~L~EaE~kl~ELQ~qL~~an 451 (651)
+.-++++.+..+..+|..|+-+++- +.+|++.+++ +..+++. ....+.+....+.+++.++-...
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~ 761 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKE 761 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666665444432 2233333332 2222222 22233444455555555554433
Q ss_pred hhHHHHHHHHH----HHHHhhhhhhhhhhhHHHHHHHHHHHHHHh----------HHHHHHHHHHHHhhHHHHHHHHHHH
Q 006305 452 KSKQAVEVEMK----AAIAARGVAESKLSVVEAEMKTQLALANKS----------KQAAEEEVKSAKSKKEAAESRLRAV 517 (651)
Q Consensus 452 eSk~~~E~el~----a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s----------~~~a~eelk~~~~k~~~lEs~l~~~ 517 (651)
..-...+.+.. .|-....+-++++.-|+.||+.--.-+.++ ++...=+...++-...+.++++..+
T Consensus 762 ~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~ 841 (1174)
T KOG0933|consen 762 RALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQL 841 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332 222234577888888888877443332222 1222222334555577777888888
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHhhhcCcchhhh-hhHHHHHHHh
Q 006305 518 EAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI---ELQHEVKLQYLAGSNQELKI-NQEEELAVAA 593 (651)
Q Consensus 518 eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~---~~~~e~~~~~~~~~n~dlKi-KQEkELA~AA 593 (651)
+..+..|...+..|++.|.+.-..+....+...+....+.-.-.++ ...++. | .....++.+++ |-|.|+..--
T Consensus 842 ~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~-~-~~e~~~~~l~~kkle~e~~~~~ 919 (1174)
T KOG0933|consen 842 EKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK-C-LSEKSDGELERKKLEHEVTKLE 919 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH-H-HHHhhcccchHHHHHhHHHHhh
Confidence 8888888888888887777776666666665555555444333222 112222 2 22223444443 3456666666
Q ss_pred hhhHHHHHHHHHHHHhh
Q 006305 594 SKFAECQKTIASLGRQL 610 (651)
Q Consensus 594 ~KLAECQkTIasLGrQL 610 (651)
.--+.|-+-|..|-+--
T Consensus 920 ~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 920 SEKANARKEVEKLLKKH 936 (1174)
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 66678888777765544
No 26
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.96 E-value=3 Score=50.49 Aligned_cols=58 Identities=26% Similarity=0.400 Sum_probs=38.5
Q ss_pred HHHhHHhHHHHHHHHHhhhhHHHhhHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305 394 LIHRTAELEEELENMRAEKSELEMDLK---ESQ---RRLETSQNQLKEAELKLEELETQLAFANKSK 454 (651)
Q Consensus 394 ~~~q~~eLEeKlEKleaEK~ELEmaL~---e~q---~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk 454 (651)
+..|+.+|.+|||-+..-+.|-...|. +.. ++++.-++++++. .++||.+|-.+....
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~q---qa~Lqrel~raR~e~ 292 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQ---QADLQRELKRARKEA 292 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 888999999999988877666554444 344 4455555555544 456888876654443
No 27
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.93 E-value=0.92 Score=52.15 Aligned_cols=155 Identities=25% Similarity=0.291 Sum_probs=101.5
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQ---------------RRLETSQNQLKEAELKLEELETQLAFANK 452 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q---------------~~Le~s~~~L~EaE~kl~ELQ~qL~~ane 452 (651)
+.||-.+..+++.-=+||..|+++=..|+.++...+ ..|-+.+.-+.++....++++.++.-+.+
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 458888889999999999999999999999888644 33334444444444444444444444333
Q ss_pred hHHHHHHHHHHH-------HHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006305 453 SKQAVEVEMKAA-------IAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLR 525 (651)
Q Consensus 453 Sk~~~E~el~a~-------~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~ 525 (651)
.......++... .........+++-+++ ++.-.+..++.+|..+..+..|+..|.
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA------------------e~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA------------------EINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh------------------HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 333332222222 1112223333322222 233344556778888888888888888
Q ss_pred HHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 526 SKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 526 ~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
.-|..+..++++|..+-.++..+|+.|.++|.=+.
T Consensus 183 ~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 183 EELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888888888888888888888887665
No 28
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.46 E-value=2.9 Score=49.52 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhh---HHHHHHHHHHHHHHhHHHHHHHHH----
Q 006305 429 SQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSV---VEAEMKTQLALANKSKQAAEEEVK---- 501 (651)
Q Consensus 429 s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~---lE~Ei~~eL~la~~s~~~a~eelk---- 501 (651)
++..|..+.++-+.||..+..+..+++.=..-+ ..+|+||.. +..+++++|.--.+.+..+++.-.
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l-------~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~ 530 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSL-------QQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALA 530 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Confidence 344445555555555555555554443321111 234555433 112455555555444433222111
Q ss_pred -----------HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 502 -----------SAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 502 -----------~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
..+..++.||+.+..+..|++...+.+..||.+++
T Consensus 531 ~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 531 QAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred cchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12355788888888888888888888888888884
No 29
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.26 E-value=0.0049 Score=73.22 Aligned_cols=149 Identities=23% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH---
Q 006305 406 ENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM--- 482 (651)
Q Consensus 406 EKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei--- 482 (651)
.||+++..+|++.|..++.......-+++-....+.+||.+++.+.-....+..+ ...+++++..|++|+
T Consensus 549 kKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~-------~~~~e~r~~~l~~elee~ 621 (859)
T PF01576_consen 549 KKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQ-------LAVSERRLRALQAELEEL 621 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 7788889999999988888888888888888888888888888777666544333 334566777777654
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHH
Q 006305 483 KTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ 561 (651)
Q Consensus 483 ~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~ 561 (651)
...+..|...+..|+.++.-+......+-++...+-.+...|..+|..|+.+++.+........-|+++...++.++..
T Consensus 622 ~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~ 700 (859)
T PF01576_consen 622 REALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAE 700 (859)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 3557777777777777776666555555555555666666677777778888888888888888888888888777764
No 30
>PRK03918 chromosome segregation protein; Provisional
Probab=95.19 E-value=9.1 Score=45.25 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhhhh-HHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhh
Q 006305 193 DLCSKLEAAEKQNSALKLELLSLVKELE-LRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVR 262 (651)
Q Consensus 193 ~L~~rLes~EKen~sLkyE~~~l~kELe-IR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~r 262 (651)
.+...++.++++...++.++..+++.+. +...-..+.... ... ++-.+.+..+..+..++.+++.+.+
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~-~~~-~~~~~~~~~l~~~~~~l~~~~~~~~ 372 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK-KKL-KELEKRLEELEERHELYEEAKAKKE 372 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666554 111111111111 111 3333444455555555555555543
No 31
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.16 E-value=3.1 Score=40.02 Aligned_cols=133 Identities=22% Similarity=0.322 Sum_probs=65.5
Q ss_pred HHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 006305 395 IHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESK 474 (651)
Q Consensus 395 ~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~k 474 (651)
.........+++.+++....++-.+.....+|.....++.-++..|+.++.+|..++......+ .
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~--------------~- 70 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE--------------K- 70 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------H-
Confidence 3334444445555555555555555555555555555555555555555555443333321110 0
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHH
Q 006305 475 LSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKD 554 (651)
Q Consensus 475 l~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEe 554 (651)
........+.-.+..+++|..+..+.+..-.+|..+...+..+-.+|..|+.+. .....||..|+.
T Consensus 71 -------~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~-------~~~E~k~eel~~ 136 (143)
T PF12718_consen 71 -------RKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER-------DQWEEKYEELEE 136 (143)
T ss_pred -------HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH-------HHHHHHHHHHHH
Confidence 001122333334555666666666666666666666666666666666666543 334455555554
Q ss_pred HH
Q 006305 555 EL 556 (651)
Q Consensus 555 eL 556 (651)
++
T Consensus 137 k~ 138 (143)
T PF12718_consen 137 KY 138 (143)
T ss_pred HH
Confidence 43
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.13 E-value=8.5 Score=44.60 Aligned_cols=58 Identities=34% Similarity=0.480 Sum_probs=28.1
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL 447 (651)
|.+.+......|+..++.|+.+...|+..|...+...+....+.+++......|..+.
T Consensus 151 E~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~ 208 (546)
T PF07888_consen 151 EKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEER 208 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555444444444444444444343333
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.91 E-value=14 Score=45.83 Aligned_cols=228 Identities=18% Similarity=0.272 Sum_probs=102.6
Q ss_pred HHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006305 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAEL-----KLEELETQLAFANKSKQAVEVEMKAAI 465 (651)
Q Consensus 391 le~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~-----kl~ELQ~qL~~aneSk~~~E~el~a~~ 465 (651)
++.+...+...++.+.-|+.+-.+.+.-|... ++++....+++-... -+.+.++||+.+.+...-++.++-...
T Consensus 223 ~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~-~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~ 301 (1074)
T KOG0250|consen 223 LDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL-EQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQ 301 (1074)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555444444444433321 122222222222222 233555666666666555554443333
Q ss_pred HhhhhhhhhhhhHH---HHHHHHHHHHHHhHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006305 466 AARGVAESKLSVVE---AEMKTQLALANKSKQAAEEEVKSAK-------SKKEAAESRLRAVEAEMETLRSKVISLEDEV 535 (651)
Q Consensus 466 ~~~~~~e~kl~~lE---~Ei~~eL~la~~s~~~a~eelk~~~-------~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Ei 535 (651)
.......+++..+. .+|++++.-.-..-..-.++|+++. -.+..++......+..++.++..++.|+..|
T Consensus 302 ~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I 381 (1074)
T KOG0250|consen 302 EKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQI 381 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333 2333333332222222222333222 2233455555555555555555555565555
Q ss_pred HHHHhhc-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhc----CcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhh
Q 006305 536 EKERALS-EENIANFQKSKDELSKVKQEIELQHEVKLQYLAG----SNQELKINQEEELAVAASKFAECQKTIASLGRQL 610 (651)
Q Consensus 536 ekER~~s-~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~----~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQL 610 (651)
.+.+..- .+....--+.+.++...+.+++--++. ...+.. .-.+.+..+| +...--++...=+++|..-..+|
T Consensus 382 ~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~-~~~L~~e~~~~~~~~~~~~e-e~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 382 ADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQ-INSLREELNEVKEKAKEEEE-EKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444 444444444444444444433222221 000000 1112223334 45445578888899999999999
Q ss_pred hhccc-cccccc
Q 006305 611 RSLVT-LDDFLI 621 (651)
Q Consensus 611 KSLa~-ledfl~ 621 (651)
+.|.. ..|++.
T Consensus 460 ~~lk~~k~dkvs 471 (1074)
T KOG0250|consen 460 KDLKKTKTDKVS 471 (1074)
T ss_pred HHHHhcccchhh
Confidence 99973 445443
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.86 E-value=2.7 Score=43.99 Aligned_cols=46 Identities=37% Similarity=0.555 Sum_probs=23.3
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHH
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQL 433 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L 433 (651)
++|++.+...+..++..++.++-++.-++..+.+.+.++...+..+
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555544444444433
No 35
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.74 E-value=0.11 Score=60.73 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 504 ~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
.+.+..|..++..++.|+..|...+..|+.+|++
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778999999999999999999999999986
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.73 E-value=10 Score=44.06 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=39.6
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~ 468 (651)
..++.+.....+|......|+.+...|...+... +..|.........|+.+......+...+..+........
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l-------~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERL-------EAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333 344444444444444444444444444444444444444
Q ss_pred hhhhhhhhhHHHHHH
Q 006305 469 GVAESKLSVVEAEMK 483 (651)
Q Consensus 469 ~~~e~kl~~lE~Ei~ 483 (651)
.++..+|.-|+.+|.
T Consensus 216 ~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 216 AEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556666665544
No 37
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.71 E-value=14 Score=44.97 Aligned_cols=151 Identities=21% Similarity=0.291 Sum_probs=79.4
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 006305 412 KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANK 491 (651)
Q Consensus 412 K~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~ 491 (651)
+..++...-+++..+...+.++.+++-.+.+-|.+...+.+..+.+..++-...+.+.+.+.-..+.++-+.+.|..-|.
T Consensus 346 ~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~r 425 (980)
T KOG0980|consen 346 KAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENR 425 (980)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444556666666666666666666666665555555555544444444444444444443333333344444444
Q ss_pred hHH--HHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHH
Q 006305 492 SKQ--AAEEEVKS----AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE 562 (651)
Q Consensus 492 s~~--~a~eelk~----~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~ 562 (651)
++. ..++++.. +-.||..+--|+...+.-+..+..+...|...|++=..-...+..|++...+.+...++|
T Consensus 426 y~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~E 502 (980)
T KOG0980|consen 426 YEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQE 502 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 432 33444432 445666666666665555555555555666555554444455555666655555555543
No 38
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.69 E-value=7.7 Score=45.30 Aligned_cols=210 Identities=25% Similarity=0.369 Sum_probs=102.8
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---H---HHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV---E---VEMK 462 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~---E---~el~ 462 (651)
.+...-...+.+|+..|..+..+..+++..+..++..+......+.+.+....+++.++..-......+ + .+|.
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~ 400 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQ 400 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 334444445555555555555555555555555555555555555555555566665544332222211 0 1111
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHh---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305 463 AAIAARGVAESKLSVVEAEMKTQLALANKS---KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKER 539 (651)
Q Consensus 463 a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s---~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER 539 (651)
.++ ++-..+-..++++- ..-..++++.+..+...-++.....-.+++.++.++..+..++..=-
T Consensus 401 ~~v-------------~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Ke 467 (594)
T PF05667_consen 401 ALV-------------EASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKE 467 (594)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111112222221 11222333333333334444555556777777778877777776543
Q ss_pred hhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhhh-hcccccc
Q 006305 540 ALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLR-SLVTLDD 618 (651)
Q Consensus 540 ~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQLK-SLa~led 618 (651)
..+ ..|..++.++... ++.-.-+.++--.-+-++ ||..||..--.=-..=||.|-+|+-+|. +.+=.|+
T Consensus 468 e~~-------~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~-KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE 537 (594)
T PF05667_consen 468 ELY-------KQLVKELEKLPKD--VNRSAYTRRILEIVKNIR-KQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDE 537 (594)
T ss_pred HHH-------HHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333 3444444444321 111111222222222222 6777999998888899999999999885 3333344
Q ss_pred ccc
Q 006305 619 FLI 621 (651)
Q Consensus 619 fl~ 621 (651)
.|.
T Consensus 538 lif 540 (594)
T PF05667_consen 538 LIF 540 (594)
T ss_pred HHH
Confidence 433
No 39
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.69 E-value=2.7 Score=45.42 Aligned_cols=139 Identities=22% Similarity=0.328 Sum_probs=113.2
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQ----RRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA 464 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q----~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~ 464 (651)
.-++++..++..||+.-..|..|-..|...-.... .=+..+-.+|.+|...++.|+.+|+.-.+....-+.++-..
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999998888888888776555332 22344567899999999999999999888888888888777
Q ss_pred HHhhhhhhhhhhhHHH---HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006305 465 IAARGVAESKLSVVEA---EMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK 527 (651)
Q Consensus 465 ~~~~~~~e~kl~~lE~---Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~K 527 (651)
.+...++..|+..+-. |+...|..+..++.....+|.-+..+|...-.-|.+++.|++.++.|
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7777788877766443 46677888888888888899999999999999999999999999765
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.66 E-value=4.3 Score=42.52 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=36.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHH
Q 006305 499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIAN 548 (651)
Q Consensus 499 elk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aK 548 (651)
++...+....+|+..+..+..++..|..++..|...+..-+....++.+.
T Consensus 97 E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677888888888888888888888888887777776666554
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.60 E-value=15 Score=47.22 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hcCcchhhhhhHH
Q 006305 510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYL--AGSNQELKINQEE 587 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~--~~~n~dlKiKQEk 587 (651)
.+..+..++.++..+..++..++.++..=+..-.++......++.++..+...+..-..++.||- +-+..+++.
T Consensus 367 ~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~---- 442 (1486)
T PRK04863 367 QNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED---- 442 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH----
Confidence 33333333333333333333333333333333334444444444444444433333334555553 333344432
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhc
Q 006305 588 ELAVAASKFAECQKTIASLGRQLRSL 613 (651)
Q Consensus 588 ELA~AA~KLAECQkTIasLGrQLKSL 613 (651)
-+..-..++++.+..+..|-.+|..+
T Consensus 443 ~LenF~aklee~e~qL~elE~kL~~l 468 (1486)
T PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVA 468 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555443
No 42
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.55 E-value=6.2 Score=40.23 Aligned_cols=162 Identities=16% Similarity=0.224 Sum_probs=113.4
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA---ELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAES 473 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~Ea---E~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~ 473 (651)
....|.-.++.++-.=+.|--.+...+.++..++..+..+ +..+++|..-+...++.+..+-.+-..++.+...+..
T Consensus 23 en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~ 102 (193)
T PF14662_consen 23 ENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666667777888888888877776 8888888888888888887777777777777777777
Q ss_pred hhhhHHHHHH---HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHH
Q 006305 474 KLSVVEAEMK---TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQ 550 (651)
Q Consensus 474 kl~~lE~Ei~---~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~ 550 (651)
++.-|.+|-. .+....++-.....++-..+.-..=..|+=+-..++.+..-...|..|..-|+.=|..-.+...+..
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s 182 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKS 182 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776633 3333333322222222222222232344444556777888888999999999999999999999999
Q ss_pred HHHHHHHh
Q 006305 551 KSKDELSK 558 (651)
Q Consensus 551 ~LEeeL~R 558 (651)
.||++|+-
T Consensus 183 ~LEeql~q 190 (193)
T PF14662_consen 183 RLEEQLSQ 190 (193)
T ss_pred HHHHHHHh
Confidence 99999864
No 43
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.07 E-value=27 Score=45.68 Aligned_cols=184 Identities=22% Similarity=0.244 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHH------HHHHHHHHH
Q 006305 82 LVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQ------EQRIQETVS 155 (651)
Q Consensus 82 lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEq------Eqki~dav~ 155 (651)
+=.+|..+.++==.--.-...+...+-.+.+...+++--+.-+|.-+++-|+.|-.+.-+-.++= -.+|-|...
T Consensus 211 ~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~k 290 (1822)
T KOG4674|consen 211 LRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWK 290 (1822)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444445556666777777777778888888888888999999988766543322 245666666
Q ss_pred HHhhhHhhhhHHHHHHHHHHHHHHHHhhhHhhhhhh--------------------------------------------
Q 006305 156 KQNLEWESKKSELESKLVDLQKKLQTAKSEAAASAD-------------------------------------------- 191 (651)
Q Consensus 156 kks~e~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~-------------------------------------------- 191 (651)
.++.+|..--.+|...|.++.+-|.++...++...+
T Consensus 291 s~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s 370 (1822)
T KOG4674|consen 291 SKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVS 370 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhh
Confidence 667777666666766676666666555443221000
Q ss_pred ----------------HHHHHHHHHHHHhhhhhhHHHH--------------HhhhhhhHHHHhhhhhhhHHHHHhHHhH
Q 006305 192 ----------------RDLCSKLEAAEKQNSALKLELL--------------SLVKELELRIVERDLSTKAAETASKQHL 241 (651)
Q Consensus 192 ----------------~~L~~rLes~EKen~sLkyE~~--------------~l~kELeIR~~Ere~s~~aAe~asKQhl 241 (651)
.++......++-++.+++.|+- .+.=.|+=-..+-+-...+--.-+..|-
T Consensus 371 ~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~ 450 (1822)
T KOG4674|consen 371 EKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELD 450 (1822)
T ss_pred hHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122222333333333333333 3333333333333344445555678899
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhcC
Q 006305 242 ESIKKLAKVEAECLRLKAVVRKAS 265 (651)
Q Consensus 242 EsvKKiakLEaECqRLr~l~rK~l 265 (651)
.++++|.++|++.++|+...+..-
T Consensus 451 ~~~q~~~~~e~~~~~l~~~~~~~~ 474 (1822)
T KOG4674|consen 451 FSNQKIQKLEKELESLKKQLNDLE 474 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987765433
No 44
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.75 E-value=0.018 Score=68.57 Aligned_cols=73 Identities=30% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHH
Q 006305 101 ENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQ 180 (651)
Q Consensus 101 e~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e~~~~L~ 180 (651)
.+++..|+..|+....+...++.....|-+=|.+++-|+-. ..+...++++.+..||..+.+++..|.
T Consensus 411 ~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~------------~~k~v~eLek~kr~LE~e~~El~~~le 478 (859)
T PF01576_consen 411 ETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDD------------AGKSVHELEKAKRRLEQEKEELQEQLE 478 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhh------------hccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777777776655432 233446788888999999999988888
Q ss_pred HhhhH
Q 006305 181 TAKSE 185 (651)
Q Consensus 181 ~a~~e 185 (651)
++...
T Consensus 479 E~E~~ 483 (859)
T PF01576_consen 479 EAEDA 483 (859)
T ss_dssp -----
T ss_pred HHHHH
Confidence 77654
No 45
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.71 E-value=21 Score=43.15 Aligned_cols=60 Identities=30% Similarity=0.372 Sum_probs=49.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHH
Q 006305 503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563 (651)
Q Consensus 503 ~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~ 563 (651)
+..+..--.+.+..++.++...+.++.-|+.++.+.|.. .++..+++.|+.+..++..+.
T Consensus 505 l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~-~e~~~r~~~Le~ev~~~~ee~ 564 (775)
T PF10174_consen 505 LASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRAN-AELRDRIQQLEQEVTRYREES 564 (775)
T ss_pred HhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-HhhcchHHHHHHHHHHHHHHH
Confidence 333433347888999999999999999999999998877 588999999999998887543
No 46
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.67 E-value=26 Score=44.05 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 505 ~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
+....+|-.+......++..++++.-.+.++..=...+....-++.+|+..|.+..
T Consensus 479 ~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~ 534 (1293)
T KOG0996|consen 479 EEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASS 534 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555556666666666666666555556666666666666666644
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.48 E-value=26 Score=43.48 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=20.1
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQL 433 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L 433 (651)
.+..+.+.++.++.+.-+.++.+..|++.+.+.....
T Consensus 742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~ 778 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKM 778 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556666666666666666666554444333
No 48
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.48 E-value=7.1 Score=45.22 Aligned_cols=208 Identities=24% Similarity=0.379 Sum_probs=132.7
Q ss_pred cchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHH
Q 006305 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA-VEVEMKA 463 (651)
Q Consensus 385 ~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~-~E~el~a 463 (651)
+.+.+|+.-+..+...+++++..|+.|-.-|.-.|..++.+++.-..-..+.+++.-.|-.+|+...-.... |.....-
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456788889999999999999999999999999999998888877777777777777777777665433221 1111111
Q ss_pred HHHh-----hhhhhhhhhhHHHHHHHH-------------------HHHHH-------HhHHHHHHHHHHHHhhHHHHHH
Q 006305 464 AIAA-----RGVAESKLSVVEAEMKTQ-------------------LALAN-------KSKQAAEEEVKSAKSKKEAAES 512 (651)
Q Consensus 464 ~~~~-----~~~~e~kl~~lE~Ei~~e-------------------L~la~-------~s~~~a~eelk~~~~k~~~lEs 512 (651)
...+ +.+-..+|-..=.||..+ +.-++ -..-.+.|+++.+....-.|-+
T Consensus 231 ~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~ 310 (546)
T KOG0977|consen 231 ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRA 310 (546)
T ss_pred HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhh
Confidence 1100 112233332222233221 22222 2234677899999888888889
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHH
Q 006305 513 RLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVA 592 (651)
Q Consensus 513 ~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~A 592 (651)
++..+|.-..-|...|..|+.++..++..++..+. +.+.+|.++..+.+- +-..+..+. |+|+.=+.||+.=
T Consensus 311 klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~---~kd~~i~~mReec~~-l~~Elq~Ll----D~ki~Ld~EI~~Y 382 (546)
T KOG0977|consen 311 KLSELESRNSALEKRIEDLEYQLDEDQRSFEQALN---DKDAEIAKMREECQQ-LSVELQKLL----DTKISLDAEIAAY 382 (546)
T ss_pred hhccccccChhHHHHHHHHHhhhhhhhhhhhhhhh---hHHHHHHHHHHHHHH-HHHHHHHhh----chHhHHHhHHHHH
Confidence 99999999999999999999999999999876654 455566666543211 111122222 4455556677643
Q ss_pred hhhhHHHHH
Q 006305 593 ASKFAECQK 601 (651)
Q Consensus 593 A~KLAECQk 601 (651)
-||=|=.+
T Consensus 383 -RkLLegee 390 (546)
T KOG0977|consen 383 -RKLLEGEE 390 (546)
T ss_pred -HHHhcccc
Confidence 55555444
No 49
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=4.4 Score=48.51 Aligned_cols=151 Identities=16% Similarity=0.268 Sum_probs=104.6
Q ss_pred ccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006305 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA 463 (651)
Q Consensus 384 ~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a 463 (651)
...+..|++++..++-.|..||--+...+-.-..++...+.+.+...+......+.+-|+|..|--.--.++..+.++.+
T Consensus 439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34578999999999999999999999998888888888888888888888888888888887766666666666666666
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcH
Q 006305 464 AIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSE 543 (651)
Q Consensus 464 ~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~ 543 (651)
+......--.+++.|+ .|-.-++++ +..|+-++..++.|.++-.+.|+.+...+.+=|.-+-
T Consensus 519 ~q~a~~~~~~~~s~L~--------aa~~~ke~i----------rq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~ 580 (1118)
T KOG1029|consen 519 KQSAHKETTQRKSELE--------AARRKKELI----------RQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN 580 (1118)
T ss_pred hhhhccCcchHHHHHH--------HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6544433333332222 222222222 3345666777777777777777777777776666665
Q ss_pred HHHHHHHHH
Q 006305 544 ENIANFQKS 552 (651)
Q Consensus 544 E~~aKc~~L 552 (651)
--..+|++|
T Consensus 581 ~q~lake~~ 589 (1118)
T KOG1029|consen 581 SQQLAKEEL 589 (1118)
T ss_pred HHHHHHHHH
Confidence 555666554
No 50
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.79 E-value=34 Score=43.02 Aligned_cols=162 Identities=21% Similarity=0.312 Sum_probs=81.7
Q ss_pred HHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHhhhhhhhh
Q 006305 398 TAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA---AIAARGVAESK 474 (651)
Q Consensus 398 ~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a---~~~~~~~~e~k 474 (651)
+..++..+.++.-..+.+.-.++.++.+....+.+..+++..+..+++....+-.--..++.++.+ ++.....=..+
T Consensus 780 v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~ 859 (1293)
T KOG0996|consen 780 VEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKR 859 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHH
Confidence 445555555555555556666666666666666666677776666666654444333333333322 22222222333
Q ss_pred hhhHH---HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHhh---cHHHHH
Q 006305 475 LSVVE---AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESR-LRAVEAEMETLRSKVISLEDEVEKERAL---SEENIA 547 (651)
Q Consensus 475 l~~lE---~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~-l~~~eaE~~~L~~Ki~~Le~EiekER~~---s~E~~a 547 (651)
+..++ +++++++.-+++...- .++|+....++..+=.. ++.-..+++.+..+++-|+.+|.+.-+. +.-+.+
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~ 938 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIA 938 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHH
Confidence 33333 3577777777633221 25555444443333221 2233445555555555555555555433 344555
Q ss_pred HHHHHHHHHHhhH
Q 006305 548 NFQKSKDELSKVK 560 (651)
Q Consensus 548 Kc~~LEeeL~R~k 560 (651)
||++.-.++.|+.
T Consensus 939 k~q~~l~~le~~~ 951 (1293)
T KOG0996|consen 939 KAQKKLSELEREI 951 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 51
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.24 E-value=34 Score=41.69 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFAN 451 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~an 451 (651)
|+.+|-.+..++.-|-.|+..|+-..+.+.|+....+..+++-+--++-.-...+++|.|.++..
T Consensus 335 irc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelK 399 (1265)
T KOG0976|consen 335 IRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELK 399 (1265)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555666667777777777777777777777666666666666666666666543
No 52
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.67 E-value=41 Score=41.46 Aligned_cols=78 Identities=26% Similarity=0.303 Sum_probs=43.0
Q ss_pred HHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHH---
Q 006305 527 KVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTI--- 603 (651)
Q Consensus 527 Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTI--- 603 (651)
||..||++|.+ +.-.+++-|||....++.++.==. -+...++-.|+=+ +.+.+|-+-+++-+-||
T Consensus 463 kVklLeetv~d--------lEalee~~EQL~Esn~ele~DLre---Eld~~~g~~kel~-~r~~aaqet~yDrdqTI~Kf 530 (1243)
T KOG0971|consen 463 KVKLLEETVGD--------LEALEEMNEQLQESNRELELDLRE---ELDMAKGARKELQ-KRVEAAQETVYDRDQTIKKF 530 (1243)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHH-HHHHHHHHHHHhHHHHHHHH
Confidence 66667766643 233455555555544432221000 1222333333322 46667778888888888
Q ss_pred ----HHHHHhhhhcccc
Q 006305 604 ----ASLGRQLRSLVTL 616 (651)
Q Consensus 604 ----asLGrQLKSLa~l 616 (651)
+.|.-||+-+++.
T Consensus 531 Relva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 531 RELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 5678888888773
No 53
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.91 E-value=47 Score=40.73 Aligned_cols=132 Identities=24% Similarity=0.264 Sum_probs=63.0
Q ss_pred HHHHhhhhHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHH--
Q 006305 406 ENMRAEKSELEMDLKESQRRLETSQN---QLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEA-- 480 (651)
Q Consensus 406 EKleaEK~ELEmaL~e~q~~Le~s~~---~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~-- 480 (651)
+..+.--..++|+|...+...+.-+. +|+.-...+.--|.|++.++.....++.+-.+.++.-..+-.++.-|..
T Consensus 361 ~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h 440 (980)
T KOG0980|consen 361 EQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEH 440 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666654433332211 2222222222233343344433333333333333333333333333332
Q ss_pred --------HHHHHHHHHHHhHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 481 --------EMKTQLALANKSKQAAEEEVKS--------------AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 481 --------Ei~~eL~la~~s~~~a~eelk~--------------~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
.|.++|..+..+....++++.. ...|+++....+..++.|...|..++..|+..+.-
T Consensus 441 ~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 441 ADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3667788877776544444332 23456666666666666666666666666665443
No 54
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.87 E-value=20 Score=34.84 Aligned_cols=89 Identities=22% Similarity=0.258 Sum_probs=56.1
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEM-------DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM 461 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEm-------aL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el 461 (651)
.+|..+.+..+.|+.+++.|+++....+. +.-.++..+++.+.++.++-..+-.|..+|+.+...|..+.-.+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566666666555555444444 44456677777777777777777777777777777777666666
Q ss_pred HHHHHhhhhhhhhhhh
Q 006305 462 KAAIAARGVAESKLSV 477 (651)
Q Consensus 462 ~a~~~~~~~~e~kl~~ 477 (651)
..+.....++++..+.
T Consensus 90 q~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 90 QKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 6665555555555543
No 55
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.70 E-value=25 Score=35.64 Aligned_cols=105 Identities=24% Similarity=0.348 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHh-----hhhhhhhhhhHHHH----------HHH
Q 006305 423 QRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK---AAIAA-----RGVAESKLSVVEAE----------MKT 484 (651)
Q Consensus 423 q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~---a~~~~-----~~~~e~kl~~lE~E----------i~~ 484 (651)
++.+.+.+.+|+......-.+...+...+.-......++. ..+.. +.++..+|..++.+ +.+
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333333333332 22221 34566666666554 335
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305 485 QLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVIS 530 (651)
Q Consensus 485 eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~ 530 (651)
.+.+++++.. -+|..-+.|...+...+..++.||..|..||..
T Consensus 147 ~leL~~k~~~---rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 147 QLELENKSFR---RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666654 244445555666666667777777777766643
No 56
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.45 E-value=25 Score=35.57 Aligned_cols=123 Identities=24% Similarity=0.321 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 006305 81 DLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLE 160 (651)
Q Consensus 81 ~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks~e 160 (651)
+|++.|.+. ...+|.=-.+.|.-|+. |=..||+=|-++|.--+..+..++++.... +.
T Consensus 2 ~L~~~He~a--------------f~~iK~YYndIT~~NL~-------lIksLKeei~emkk~e~~~~k~m~ei~~eN-~~ 59 (201)
T PF13851_consen 2 ELMKNHEKA--------------FQEIKNYYNDITLNNLE-------LIKSLKEEIAEMKKKEERNEKLMAEISQEN-KR 59 (201)
T ss_pred hHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 578888776 67788899999999998 678899999999997777777777776654 33
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhh
Q 006305 161 WESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERD 227 (651)
Q Consensus 161 ~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere 227 (651)
+-.--..++..+.+|++.|..-.....+ -..+..|+..++++...|+.|-.+|.--+.---.||+
T Consensus 60 L~epL~~a~~e~~eL~k~L~~y~kdK~~--L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd 124 (201)
T PF13851_consen 60 LSEPLKKAEEEVEELRKQLKNYEKDKQS--LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD 124 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345567777777777755443322 2367888999999999999999998877776666665
No 57
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.38 E-value=46 Score=38.21 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=45.4
Q ss_pred HHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhh
Q 006305 202 EKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVR 262 (651)
Q Consensus 202 EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~r 262 (651)
=.+..+-|.||..+..|+..=..+++-...=|+-|..-=-...+++.-|-.|..+|+..+-
T Consensus 129 ~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 129 VAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666667778888777777777777778899999999999987754
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.27 E-value=26 Score=34.07 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 006305 506 KKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559 (651)
Q Consensus 506 k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~ 559 (651)
+..+++.....+..++..+..++.-++.+++..+..-......++.|++.+...
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333333333333333333344444444444433
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.97 E-value=26 Score=37.66 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=18.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 499 elk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
+|...+.....++.++..++.++..+..++..+..+|.
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555555555444443
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.95 E-value=37 Score=35.40 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=39.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA 466 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~ 466 (651)
..++..+..++..+-..--+++.+...+..++...+.+++........++..+..|...++.+.-....++.++.....
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 3344444444444444444444444444444444555555555555555555556665655555555555554444433
No 61
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.33 E-value=54 Score=40.78 Aligned_cols=26 Identities=42% Similarity=0.502 Sum_probs=13.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSE 414 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~E 414 (651)
.+.+.+-+++.+|+.++.-|..||.-
T Consensus 265 d~~~~~~~~i~ele~~l~~l~~ekeq 290 (1200)
T KOG0964|consen 265 DESEDLKCEIKELENKLTNLREEKEQ 290 (1200)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666555444433
No 62
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.30 E-value=3.3 Score=41.05 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006305 494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRS 526 (651)
Q Consensus 494 ~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~ 526 (651)
+....++-.++--+..+|.++..++.|...|..
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555556677777777777777754
No 63
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.19 E-value=71 Score=37.85 Aligned_cols=115 Identities=26% Similarity=0.303 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------HHHHH-----hhhhhhhhhhhHHHHHH---HHHH
Q 006305 422 SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM------KAAIA-----ARGVAESKLSVVEAEMK---TQLA 487 (651)
Q Consensus 422 ~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el------~a~~~-----~~~~~e~kl~~lE~Ei~---~eL~ 487 (651)
.+++......++.+++.++-.||+-+.....+--..+..+ ++.++ +..++-.++-+||.|+. .+|.
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777766655444443333321 22222 23456667777776644 6677
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 006305 488 LANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALS 542 (651)
Q Consensus 488 la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s 542 (651)
.||.+...+ .+ ....++.+.|..++.+|..|..-|..++.-+.+||.-|
T Consensus 267 ~~N~~~~~~--~~----~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~ 315 (629)
T KOG0963|consen 267 KANSSKKLA--KI----DDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKH 315 (629)
T ss_pred hhhhhhhhc--cC----CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788776653 00 11223334444455555555555555555555555444
No 64
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.66 E-value=76 Score=37.60 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
.+.|.-||.+++.=+-.|++.=-.|...+.-|...--+...||.+|+++|-..+
T Consensus 162 N~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 162 NRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554434444455555555555555555555554444
No 65
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.64 E-value=73 Score=37.44 Aligned_cols=95 Identities=23% Similarity=0.339 Sum_probs=62.0
Q ss_pred hHHHHHHHHHhHHhHHHHH----------HHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305 387 IKAELEVLIHRTAELEEEL----------ENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKl----------EKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~ 456 (651)
+.-+++.+.....+|++++ +-++..++.|+-++.+.+.-.....+.-..++.+|+.|+.++.......+.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~ 312 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK 312 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666777777766 445556666777887777777777777778888888888888776666655
Q ss_pred HHH-----------------HHHHHHHhhhhhhhhhhhHHHH
Q 006305 457 VEV-----------------EMKAAIAARGVAESKLSVVEAE 481 (651)
Q Consensus 457 ~E~-----------------el~a~~~~~~~~e~kl~~lE~E 481 (651)
+.. +.+.|..+++.+.+.|.-+..+
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~ 354 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSE 354 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 522 2244555555666666554443
No 66
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.51 E-value=36 Score=40.15 Aligned_cols=101 Identities=27% Similarity=0.286 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006305 423 QRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKS 502 (651)
Q Consensus 423 q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~ 502 (651)
-..++..+.++..++...+.|..|+..+|.+....... ...-+...||+.+.+|.....-.........+++..
T Consensus 241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~------~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~ 314 (629)
T KOG0963|consen 241 MTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKID------DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREK 314 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC------chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888899999999999999999999888654111 122355667777777765544444444444445555
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 006305 503 AKSKKEAAESRLRAVEAEMETLRSKVI 529 (651)
Q Consensus 503 ~~~k~~~lEs~l~~~eaE~~~L~~Ki~ 529 (651)
.++-...||.++...-.+++.|..|..
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667777777777777777766543
No 67
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.04 E-value=38 Score=36.68 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 006305 400 ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVE 479 (651)
Q Consensus 400 eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE 479 (651)
.|...++-|+.++..|...+...+.-+..++.........+..|+..-+..+.--
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d------------------------- 202 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD------------------------- 202 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC-------------------------
Confidence 3444556666666666666655555555555555444444444444311111100
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 480 AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 480 ~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
..+|..+...-.....+|..+..+...++.++..+...|+....++..+..+|..
T Consensus 203 ---~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 203 ---PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123333322223333444445555556666666666666666666665555554
No 68
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.52 E-value=32 Score=32.31 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLE 427 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le 427 (651)
.++..+..++...+.++..+..+-.....-...|+.+|+
T Consensus 10 ~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 10 SELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333333334444433
No 69
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.12 E-value=46 Score=33.74 Aligned_cols=133 Identities=28% Similarity=0.307 Sum_probs=81.1
Q ss_pred HhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhH
Q 006305 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVV 478 (651)
Q Consensus 399 ~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~l 478 (651)
..|.+++..|+.--...+..+.+...+......-|..++..+++|+.+|..-..-+..
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~---------------------- 87 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS---------------------- 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3444455555544445555666666677777777778888888888887765555532
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHH-HHHHHHHHHHHHH
Q 006305 479 EAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEE-NIANFQKSKDELS 557 (651)
Q Consensus 479 E~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E-~~aKc~~LEeeL~ 557 (651)
|..+..-....+.+|+.+.-.++.|+.++..++.|-..|..++...=.+|.+-=.+-.- ...|...|.+.|.
T Consensus 88 -------L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE 160 (201)
T PF13851_consen 88 -------LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLE 160 (201)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333344556666666777788888888888888888777776666653222111 1234555555555
Q ss_pred hhH
Q 006305 558 KVK 560 (651)
Q Consensus 558 R~k 560 (651)
...
T Consensus 161 ~ke 163 (201)
T PF13851_consen 161 KKE 163 (201)
T ss_pred HHH
Confidence 544
No 70
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=84.19 E-value=69 Score=34.97 Aligned_cols=189 Identities=20% Similarity=0.299 Sum_probs=126.2
Q ss_pred hhhhhhHhhHhHHHHHHHhhc----chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhH
Q 006305 56 EVVNDSVKTLTEKLSAALLNV----SAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGA 131 (651)
Q Consensus 56 e~~~~~vk~LneKLs~al~~~----~~Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~A 131 (651)
+-++..|.+.--+|++|+.+. ++|-|+----...-.|=+.=++|.--++..|+..-+-..++-+.++-.+.-|..-
T Consensus 87 erLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~e 166 (305)
T PF14915_consen 87 ERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIE 166 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 347789999999999999985 3444443333333345555667888888777776666666666666555544332
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHH---HHHHHHHHHHHHHhhhHhh--hhhhHHHHHHHHHHHHhhh
Q 006305 132 LKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSEL---ESKLVDLQKKLQTAKSEAA--ASADRDLCSKLEAAEKQNS 206 (651)
Q Consensus 132 LKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~el---E~kl~e~~~~L~~a~~e~~--a~~~~~L~~rLes~EKen~ 206 (651)
| ....|++..||--+|..+-+| +-++-|+.+.......... ..-...+..||--++-+|+
T Consensus 167 l---------------h~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~ 231 (305)
T PF14915_consen 167 L---------------HHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENM 231 (305)
T ss_pred H---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 345567777777777777665 5566666555543322211 1223578899999999999
Q ss_pred hhhHHHHHhhhhhhHHH-HhhhhhhhHHHHHhHHhHHhHHHHHHHH-------HHHHHHHH
Q 006305 207 ALKLELLSLVKELELRI-VERDLSTKAAETASKQHLESIKKLAKVE-------AECLRLKA 259 (651)
Q Consensus 207 sLkyE~~~l~kELeIR~-~Ere~s~~aAe~asKQhlEsvKKiakLE-------aECqRLr~ 259 (651)
-|+-.|--..+.-.+.- .--+.-.+-.|+..+-|.++-|.+--|| .||..||-
T Consensus 232 LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkE 292 (305)
T PF14915_consen 232 LLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKE 292 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999988777766544 4556666778899999999988776554 57777764
No 71
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=83.73 E-value=58 Score=33.72 Aligned_cols=55 Identities=29% Similarity=0.462 Sum_probs=32.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 006305 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSK 558 (651)
Q Consensus 497 ~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R 558 (651)
+++|+-++.|.+..|.+...++.=|..|..-|+-|+..+...+ .||..+...|.+
T Consensus 143 e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k-------~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 143 EEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK-------EKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH-------HHHHHHHHHHHH
Confidence 3455666666666676666666666666666666666655443 345555555444
No 72
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.39 E-value=47 Score=32.41 Aligned_cols=66 Identities=23% Similarity=0.295 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 495 ~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
-+..+|.++.+....+-+.+..++.|+..++..-..|..++++.+.-=.+....+..+..-|+...
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333455556666666666666777777777777777777777766666666666666666666554
No 73
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.29 E-value=1.5e+02 Score=38.01 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 418 DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458 (651)
Q Consensus 418 aL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E 458 (651)
.+.+...++.....+.+.++..+-.++.+|..+......+.
T Consensus 495 ~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~ 535 (1317)
T KOG0612|consen 495 EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAA 535 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555556666655555554443
No 74
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=82.89 E-value=62 Score=33.49 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=17.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 006305 501 KSAKSKKEAAESRLRAVEAEMETLRSKVI 529 (651)
Q Consensus 501 k~~~~k~~~lEs~l~~~eaE~~~L~~Ki~ 529 (651)
+++..+-.-++.++...+.+++.+..|+.
T Consensus 126 k~l~~~ee~~~q~~d~~e~~ik~ltdKLk 154 (205)
T KOG1003|consen 126 KSLSAKEEKLEQKEEKYEEELKELTDKLK 154 (205)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 34444444556666667777777776554
No 75
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.84 E-value=79 Score=34.64 Aligned_cols=119 Identities=19% Similarity=0.283 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHH----HHHHHHHHHHhHHHHHHHHHH-----------H---
Q 006305 442 ELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAE----MKTQLALANKSKQAAEEEVKS-----------A--- 503 (651)
Q Consensus 442 ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~E----i~~eL~la~~s~~~a~eelk~-----------~--- 503 (651)
.|+.++..+..........+..+..+++++|..|+.=++- +.++..--+.-+...+..|.. .
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~ 218 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVS 218 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhc
Confidence 4555555555444455555556666666666665332111 233333333334444444431 1
Q ss_pred --HhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 504 --KSKKEAAESRLRAVEAEMETLRSKVISLEDE--------VEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 504 --~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E--------iekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
+..-..+.+++..+-.|+..|+..+-.-+.+ +++||.+.+|+..--++|.-++.|..
T Consensus 219 ~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erre 285 (310)
T PF09755_consen 219 EENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERRE 285 (310)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224668888999999999988866555443 57889999999999999998888866
No 76
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.52 E-value=1.1e+02 Score=36.16 Aligned_cols=190 Identities=21% Similarity=0.279 Sum_probs=104.5
Q ss_pred HHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHhh
Q 006305 392 EVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM---KAAIAAR 468 (651)
Q Consensus 392 e~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el---~a~~~~~ 468 (651)
+..++.+..|+..|..|+.||..|-.-|...+.+++-++..|++..+++.-|-.-++....-....+.+= +.-.-.+
T Consensus 314 el~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~ka 393 (772)
T KOG0999|consen 314 ELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEKA 393 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhccccccccccc
Confidence 4456678889999999999999999999999999999999999999888877776655433333322220 0000011
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHH
Q 006305 469 GVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIAN 548 (651)
Q Consensus 469 ~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aK 548 (651)
.+.+-.|.-++ =....+.+|...--...++|+...... .---+-...+.++..+..|+.+|+.--
T Consensus 394 d~~e~~l~a~e-~~a~k~~~a~~e~i~lk~ql~~l~~~~-n~tde~~~~e~evq~l~~kl~llekas------------- 458 (772)
T KOG0999|consen 394 DLYEVDLNALE-ILACKYAVAVDEMIQLKDQLKALYHQL-NYTDEKVQYEKEVQELVEKLRLLEKAS------------- 458 (772)
T ss_pred hhHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh-cccchhhhHHHHHHHHHHHHHHHHHhh-------------
Confidence 12333333222 011224444433334444444433220 001123446788888888888886432
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHH
Q 006305 549 FQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQK 601 (651)
Q Consensus 549 c~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQk 601 (651)
.-.|+-+++..-.-++..+++ ..++..++-.--| +||.+-.-.-+|-.
T Consensus 459 la~l~~evq~~t~ia~~~~~t----l~~A~~~lv~~Sd-eLaqlyh~vc~~n~ 506 (772)
T KOG0999|consen 459 LAELEKEVQKATEIAEEGTET----LVNAQDELVTFSD-ELAQLYHHVCECNN 506 (772)
T ss_pred HHHhHHHHHHHHHHHhccccc----chhhhHhHhhhhH-HHHHHHHHHHHHcC
Confidence 334555555555322222222 2222233333334 56666555556654
No 77
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.22 E-value=1.5e+02 Score=37.31 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=76.1
Q ss_pred HHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHH
Q 006305 392 EVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV-------EVEMKAA 464 (651)
Q Consensus 392 e~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~-------E~el~a~ 464 (651)
.....+..+|++.|.++..+..+.....+.|.++++-...+..........|..+++..++.++++ ..+|+.+
T Consensus 674 ~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i 753 (1200)
T KOG0964|consen 674 NESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEI 753 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Confidence 344558888888888888888888888888888888888888888888888999988887777776 4566777
Q ss_pred HHhhhhhhhhhhhHHHHHHHHH
Q 006305 465 IAARGVAESKLSVVEAEMKTQL 486 (651)
Q Consensus 465 ~~~~~~~e~kl~~lE~Ei~~eL 486 (651)
.+++..+++..+.+|+||-.+|
T Consensus 754 ~~~l~~~~~~~~~~e~el~sel 775 (1200)
T KOG0964|consen 754 KTSLHKLESQSNYFESELGSEL 775 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHhHHH
Confidence 8888888998888888766554
No 78
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=81.95 E-value=97 Score=35.26 Aligned_cols=113 Identities=21% Similarity=0.295 Sum_probs=75.8
Q ss_pred hhhHhhHhHHHHHHHhhcchhhHHHHHHHHHHHHHh----h----------hhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 006305 59 NDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAV----S----------GWEKAENELSTLKQQLKAASQKNSALENR 124 (651)
Q Consensus 59 ~~~vk~LneKLs~al~~~~~Kd~lvkqhaKvaeEAv----~----------GWEKAe~E~~slK~qLe~~~~~~~~~edr 124 (651)
++..+.|.|-.+.-+-++ +++.--|.|-.--+. + |-+--+.+|-.|..|||+-..+.-+.+.-
T Consensus 244 Edq~~~LsE~~~k~~q~L---e~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~ 320 (593)
T KOG4807|consen 244 EDQQNRLSEEIEKKWQEL---EKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSA 320 (593)
T ss_pred HHHHHHHHHHHHHHHHHH---HhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 567788888777776655 454444444332222 2 55667889999999999988776543322
Q ss_pred hcch------h-hHHH-HHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHH
Q 006305 125 VSHL------D-GALK-ECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVD 174 (651)
Q Consensus 125 vshL------D-~ALK-ECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e 174 (651)
+.-+ | .-++ -|-|-+--..+-+-++|.|.--.--+|+++++-+-+.-|+|
T Consensus 321 ~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAE 378 (593)
T KOG4807|consen 321 LRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAE 378 (593)
T ss_pred HhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2111 1 1122 48888888888888999998888888888888877776665
No 79
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.94 E-value=18 Score=30.71 Aligned_cols=47 Identities=36% Similarity=0.434 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305 493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKER 539 (651)
Q Consensus 493 ~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER 539 (651)
++...++|.-+.+.+-.++++|..++.-...|..+|..|+.+++.=|
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46667788888888889999999999999999999999999987633
No 80
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.93 E-value=70 Score=33.40 Aligned_cols=46 Identities=35% Similarity=0.466 Sum_probs=24.4
Q ss_pred HHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305 407 NMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANK 452 (651)
Q Consensus 407 KleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ane 452 (651)
+++-++.+|+.-|...+.+....+..|.+.+.....|..++..+..
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aee 47 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEE 47 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555444433
No 81
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.76 E-value=15 Score=36.42 Aligned_cols=76 Identities=33% Similarity=0.485 Sum_probs=17.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA 463 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a 463 (651)
+.|+..+.....++..+|-.+..+..+++..+......|...+..+...+.++..|..++..-+...+.+..++.+
T Consensus 80 ~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 80 QEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA 155 (194)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333333333333333333333333333334334444444444444444444433334443333333
No 82
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.71 E-value=44 Score=36.17 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=29.0
Q ss_pred HHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 394 ~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
+-.++.+||..++||+-|+--...-| +++...|.-..++.++-..+
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQl-------eSlEAaLqKQKqK~e~ek~e 61 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQL-------ESLEAALQKQKQKVEEEKNE 61 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHhhh
Confidence 34588999999999999887655554 44444444444444443333
No 83
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=81.68 E-value=1.3e+02 Score=36.49 Aligned_cols=111 Identities=23% Similarity=0.180 Sum_probs=63.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhHHHHH-HHHHH------------HHhhHHHHHHHHHHHHHH---HHHHHHHHhhhHH
Q 006305 470 VAESKLSVVEAEMKTQLALANKSKQAAE-EEVKS------------AKSKKEAAESRLRAVEAE---METLRSKVISLED 533 (651)
Q Consensus 470 ~~e~kl~~lE~Ei~~eL~la~~s~~~a~-eelk~------------~~~k~~~lEs~l~~~eaE---~~~L~~Ki~~Le~ 533 (651)
.+..||..+-.||..+++-+=+|-.+-. +.++. ..+|.+.|+.++..-=.+ .-.|++||..|..
T Consensus 601 ~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~ 680 (762)
T PLN03229 601 DLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDLKSKIELLKL 680 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3455666666677777666655532111 11211 134455555444332111 2357778899988
Q ss_pred HHHHHHhhcH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhH---HHHHHHhh
Q 006305 534 EVEKERALSE---ENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQE---EELAVAAS 594 (651)
Q Consensus 534 EiekER~~s~---E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQE---kELA~AA~ 594 (651)
|+ .++... +...|.+.|+.||...-- .+....+||-|+| .||+.|++
T Consensus 681 Ev--aka~~~pd~~~k~kieal~~qik~~~~------------~a~~~~~lkek~e~l~~e~~~~~~ 733 (762)
T PLN03229 681 EV--AKASKTPDVTEKEKIEALEQQIKQKIA------------EALNSSELKEKFEELEAELAAARE 733 (762)
T ss_pred HH--HhcCCCCCcchHHHHHHHHHHHHHHHH------------HHhccHhHHHHHHHHHHHHHHhhc
Confidence 88 444432 344788888888876553 3456778888998 45555544
No 84
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.65 E-value=70 Score=40.65 Aligned_cols=133 Identities=22% Similarity=0.297 Sum_probs=60.9
Q ss_pred hhhhhhcchhhHHHHHHHHHHHhhHH---HHHHHHHHH---HHHhhhHhhhhHHHHH---HHHHHHHHHHHhhhHhh---
Q 006305 120 ALENRVSHLDGALKECVRQLRQAREE---QEQRIQETV---SKQNLEWESKKSELES---KLVDLQKKLQTAKSEAA--- 187 (651)
Q Consensus 120 ~~edrvshLD~ALKECmrQLr~~rEE---qEqki~dav---~kks~e~e~~~~elE~---kl~e~~~~L~~a~~e~~--- 187 (651)
+..+-+..|+.++.+--|||--++|. -|++|-|+- .-..+++|+++.+... -..||..+++..+.-+-
T Consensus 1222 vs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA 1301 (1758)
T KOG0994|consen 1222 VSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGA 1301 (1758)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhH
Confidence 34445666777777776776655553 344444433 3333666666655432 22333333333322110
Q ss_pred -hhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHH
Q 006305 188 -ASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLK 258 (651)
Q Consensus 188 -a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr 258 (651)
.+++.....-++.-..-|++-. ++-.....= |.+|+ |..+.+|.-. |.++-+.|.+|.++..-|-
T Consensus 1302 ~~~~r~a~~~s~ea~~r~~~s~~-~l~s~~~~s--R~e~l-~~k~k~~f~~--~~~n~~~L~el~~~l~sL~ 1367 (1758)
T KOG0994|consen 1302 FNSTRHAYEQSAEAERRVDASSR-ELASLVDQS--RVEEL-LVKQKGDFGG--LAENSRLLVELRAELSSLP 1367 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh-cccchhhhh--HHHHH-HHHhhhcccc--cccccHHHHHHHHHhcCCC
Confidence 0111222222222222222210 111110000 33332 3344444433 8899999999999988653
No 85
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=81.59 E-value=78 Score=33.73 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 006305 550 QKSKDELSK 558 (651)
Q Consensus 550 ~~LEeeL~R 558 (651)
..++.++.+
T Consensus 263 ~~~~~~l~~ 271 (423)
T TIGR01843 263 NKARDRLQR 271 (423)
T ss_pred HHHHHHHhh
Confidence 344444444
No 86
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.59 E-value=1.2e+02 Score=35.67 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 402 EEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 402 EeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
..+++.++.+..+++..+.....++...+.++..++.++.++..++..
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555554443
No 87
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=81.16 E-value=81 Score=33.62 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 006305 543 EENIANFQKSKDELSKVK 560 (651)
Q Consensus 543 ~E~~aKc~~LEeeL~R~k 560 (651)
.++......++.++....
T Consensus 249 ~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 249 TEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555556666665544
No 88
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=80.77 E-value=46 Score=36.02 Aligned_cols=116 Identities=24% Similarity=0.279 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Q 006305 436 AELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLR 515 (651)
Q Consensus 436 aE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~ 515 (651)
|=+|+.+|..||+-.++.++.-+-+|...++...-.-.|+..-..| . ....-+...+-+....+|..-.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e----~-------s~LkREnq~l~e~c~~lek~rq 84 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE----Y-------SALKRENQSLMESCENLEKTRQ 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh----h-------hhhhhhhhhHHHHHHHHHHHHH
Confidence 3467778888888888888777666666555555444444211111 1 1111122234455666788888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006305 516 AVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEV 569 (651)
Q Consensus 516 ~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~ 569 (651)
.+..++..-...|+.||+.+..=|. ....|+.+|.|.+.+++-+|.+
T Consensus 85 Klshdlq~Ke~qv~~lEgQl~s~Kk-------qie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 85 KLSHDLQVKESQVNFLEGQLNSCKK-------QIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HhhHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888889999988875444 5667888888888877665554
No 89
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.49 E-value=73 Score=34.27 Aligned_cols=50 Identities=26% Similarity=0.338 Sum_probs=30.3
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
=...|++.++.|..+..-|...+......+..+..+....+..+..|+.-
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666655555555555555544
No 90
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=79.92 E-value=1.8e+02 Score=36.74 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
+-..|.....|+..|.++++.|.+.+.+.=.......-||..|++.+.-.+
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE 543 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLE 543 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444445555556666666666666655555566666666665555444
No 91
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.63 E-value=63 Score=31.46 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHH
Q 006305 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSK 553 (651)
Q Consensus 505 ~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LE 553 (651)
..++.+......+..++..+...+..+...+...+..+.....+-.+++
T Consensus 137 ~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 137 ESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444433333333
No 92
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=78.95 E-value=1.4e+02 Score=36.21 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=43.0
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA 448 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~ 448 (651)
..+++-..++.||-+|-.+|.+-+---+-.|- -.+..++..+-||+++|.+-++|-.++-
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd---~~R~Ei~~LqrRlqaaE~R~eel~q~v~ 636 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARRED---MFRGEIEDLQRRLQAAERRCEELIQQVP 636 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56677888899999999888665543332222 2467788888889999888888766543
No 93
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.53 E-value=43 Score=36.32 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhHH
Q 006305 518 EAEMETLRSKVISLED 533 (651)
Q Consensus 518 eaE~~~L~~Ki~~Le~ 533 (651)
-.|+..|+.++..|+.
T Consensus 270 ~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 270 FKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666654
No 94
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=77.60 E-value=1.7e+02 Score=35.37 Aligned_cols=53 Identities=28% Similarity=0.436 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLE 441 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ 441 (651)
.++..+.+++..|++.|+-|+.......+.|+.++...+..+.+|.-+...++
T Consensus 162 ~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le 214 (739)
T PF07111_consen 162 EALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELE 214 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 36777788999999999999999999999999999999999999887776643
No 95
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.20 E-value=98 Score=32.33 Aligned_cols=66 Identities=35% Similarity=0.382 Sum_probs=48.9
Q ss_pred HHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 393 VLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458 (651)
Q Consensus 393 ~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E 458 (651)
.+.....+|+.+|.+++.+-.....+|...+.....+.-.++.++..-..|+.....+...+..++
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888999999999888888888888887777777777777777777777555555554433
No 96
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.89 E-value=43 Score=36.12 Aligned_cols=80 Identities=26% Similarity=0.365 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006305 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA 464 (651)
Q Consensus 385 ~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~ 464 (651)
..+..|+..+......|...|++++.|..++...+...+.+.+.....-...-...-.++.++....+..+.+..++..+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777888888888888888887777777666665555444444445556666555555555555554443
No 97
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=76.74 E-value=1.8e+02 Score=35.22 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006305 419 LKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA 464 (651)
Q Consensus 419 L~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~ 464 (651)
|...|-.++..++-++-.+...+-|..||..+..-|.++|-+|+.+
T Consensus 116 Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEA 161 (717)
T PF09730_consen 116 LKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEA 161 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347788899999999999999999999999999999999999444
No 98
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=76.56 E-value=98 Score=31.97 Aligned_cols=61 Identities=26% Similarity=0.311 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHH
Q 006305 493 KQAAEEEVKSAKSK----KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSK 553 (651)
Q Consensus 493 ~~~a~eelk~~~~k----~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LE 553 (651)
+.-|+++|..+|+. +......+..+++-++....+|.+|+..|+.-..--+|.-.=|-+|=
T Consensus 138 K~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 138 KAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666644 55667778889999999999999999999988888888888888773
No 99
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.22 E-value=1.2e+02 Score=34.83 Aligned_cols=145 Identities=21% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhhHHHHHHHH------------------HHHHHHhHHHHHHHHH--------HHHhh----HHHHHHH
Q 006305 464 AIAARGVAESKLSVVEAEMKTQ------------------LALANKSKQAAEEEVK--------SAKSK----KEAAESR 513 (651)
Q Consensus 464 ~~~~~~~~e~kl~~lE~Ei~~e------------------L~la~~s~~~a~eelk--------~~~~k----~~~lEs~ 513 (651)
|...+++++.||.||+.++... |.+...++.+ +++.+ ++.+- ++.+=--
T Consensus 213 mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~L-EEq~reqElraeE~l~Ee~rrhrEil~k~ 291 (502)
T KOG0982|consen 213 MEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHML-EEQRREQELRAEESLSEEERRHREILIKK 291 (502)
T ss_pred hhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHh
Q 006305 514 LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAA 593 (651)
Q Consensus 514 l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA 593 (651)
-+.+..+++.+..++..|+.|...=|-+-+..-+-|.+|.++.+|....++.-.+. -..+.+++..+=--|-.--
T Consensus 292 eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlq-----l~~eq~l~~rm~d~Lrrfq 366 (502)
T KOG0982|consen 292 EREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQ-----LICEQKLRVRMNDILRRFQ 366 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHhhhhcc
Q 006305 594 SKFAECQKTIASLGRQLRSLV 614 (651)
Q Consensus 594 ~KLAECQkTIasLGrQLKSLa 614 (651)
.---.-|+-|.-||++|.-|.
T Consensus 367 ~ekeatqELieelrkelehlr 387 (502)
T KOG0982|consen 367 EEKEATQELIEELRKELEHLR 387 (502)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.50 E-value=1.5e+02 Score=33.73 Aligned_cols=71 Identities=27% Similarity=0.365 Sum_probs=43.9
Q ss_pred HHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM 461 (651)
Q Consensus 391 le~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el 461 (651)
+..+..++..++.++....-+...|+..|......+....++|.++...+.++...++..+.....++.+.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555556666666655555555666666666666666666666666666666666666666666665554
No 101
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.26 E-value=1.7e+02 Score=34.00 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=27.3
Q ss_pred HHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhhh
Q 006305 222 RIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRK 263 (651)
Q Consensus 222 R~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~rK 263 (651)
-++|.+|+.=.-=+.+=-|++.=.-+.+|+.+...|..++.+
T Consensus 175 ~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~ 216 (569)
T PRK04778 175 ENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEE 216 (569)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666777777777777777665
No 102
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.09 E-value=45 Score=34.21 Aligned_cols=25 Identities=4% Similarity=0.102 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q 006305 509 AAESRLRAVEAEMETLRSKVISLED 533 (651)
Q Consensus 509 ~lEs~l~~~eaE~~~L~~Ki~~Le~ 533 (651)
.|..++..+++++..|..+.+.++.
T Consensus 143 ~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 143 KLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 103
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.57 E-value=2e+02 Score=34.09 Aligned_cols=204 Identities=22% Similarity=0.244 Sum_probs=102.3
Q ss_pred HHHHHHHhHHhHHHHH----------HHHHhhhhHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHH
Q 006305 390 ELEVLIHRTAELEEEL----------ENMRAEKSELEMDLKESQRRLETSQNQLKE----AELKLEELETQLAFANKSKQ 455 (651)
Q Consensus 390 Ele~~~~q~~eLEeKl----------EKleaEK~ELEmaL~e~q~~Le~s~~~L~E----aE~kl~ELQ~qL~~aneSk~ 455 (651)
|++.+..+..+|..++ ++|-.|+.+|...|.+++-+++....-+-+ ++.--.+++.++-.++..-.
T Consensus 309 E~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~ 388 (581)
T KOG0995|consen 309 EIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIR 388 (581)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666555 567777777777777766666655444333 23334455555555555444
Q ss_pred HHHHHHHHHHHhhh-----------------hhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006305 456 AVEVEMKAAIAARG-----------------VAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVE 518 (651)
Q Consensus 456 ~~E~el~a~~~~~~-----------------~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~e 518 (651)
.+-.- .+....+ .....++.+-.||..++.-+..-+.-.++-+..++......-+.+...+
T Consensus 389 ~i~l~--~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~ 466 (581)
T KOG0995|consen 389 RIKLG--IAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIE 466 (581)
T ss_pred HHHHH--HHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 2222221 2333444455677777776665555444444444444444444444455
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhh
Q 006305 519 AEMETLRSKVISLEDEVEKERALSEENIANFQ----KSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAAS 594 (651)
Q Consensus 519 aE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~----~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~ 594 (651)
-|+..+-++.... |.-.++...+|+ .||++|.-.+-. .+..... +..-++.- |-+++.+
T Consensus 467 ~el~~~~~~~~~~-------k~e~eee~~k~~~E~e~le~~l~~l~l~------~~~~m~~-a~~~v~s~-e~el~~~-- 529 (581)
T KOG0995|consen 467 LELKKAESKYELK-------KEEAEEEWKKCRKEIEKLEEELLNLKLV------LNTSMKE-AEELVKSI-ELELDRM-- 529 (581)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHHHHH-HHHHHHH--
Confidence 5544444444333 333444445554 455555444320 1111111 11122211 2244444
Q ss_pred hhHHHHHHHHHHHHhhhhc
Q 006305 595 KFAECQKTIASLGRQLRSL 613 (651)
Q Consensus 595 KLAECQkTIasLGrQLKSL 613 (651)
.+.|-+-+--+|+||..+
T Consensus 530 -~~~~~eer~ki~~ql~~~ 547 (581)
T KOG0995|consen 530 -VATGEEERQKIAKQLFAV 547 (581)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 578888888888888665
No 104
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=73.24 E-value=1.3e+02 Score=36.58 Aligned_cols=75 Identities=19% Similarity=0.339 Sum_probs=49.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHHHHhhhHHHHHH---HH
Q 006305 471 AESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMET--------LRSKVISLEDEVEK---ER 539 (651)
Q Consensus 471 ~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~--------L~~Ki~~Le~Eiek---ER 539 (651)
...||..|+.||++.+.-|=.|-. |-+....+..|+.. -++||..|+.+|.+ +=
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~ss~---------------LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a 711 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIRSSD---------------LKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEA 711 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchh---------------HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 356777788888887777655433 22333333344322 13688888888876 34
Q ss_pred hhcHHHHHHHHHHHHHHHhhH
Q 006305 540 ALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 540 ~~s~E~~aKc~~LEeeL~R~k 560 (651)
..|.+.-.|+.+|+.+|....
T Consensus 712 ~~~~~lkek~e~l~~e~~~~~ 732 (762)
T PLN03229 712 LNSSELKEKFEELEAELAAAR 732 (762)
T ss_pred hccHhHHHHHHHHHHHHHHhh
Confidence 568899999999999987644
No 105
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=72.84 E-value=23 Score=30.91 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhhh
Q 006305 194 LCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRK 263 (651)
Q Consensus 194 L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~rK 263 (651)
.-..++.+.|||-.||..++-+.+-|. ..+-...+.+.|+..+-=--+..|--|+++++.+++.
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~------~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQ------KLGPESIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888777 3444566777777777555667777777777777664
No 106
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=71.75 E-value=1.7e+02 Score=32.63 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
+..|..++..+++++..+..++..|..++.
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~ 341 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIE 341 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665555543
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.74 E-value=2.6e+02 Score=34.62 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 006305 423 QRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEA 480 (651)
Q Consensus 423 q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~ 480 (651)
+++++.-+.+.+++.+...+=|...--.|..+...+.+++........++.||+-.+.
T Consensus 408 qRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~ 465 (1118)
T KOG1029|consen 408 QRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV 465 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence 4555555555555554444444444445666666677777777777777777776443
No 108
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=71.28 E-value=2.1e+02 Score=33.47 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=39.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 502 SAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 502 ~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
.+.-.....|.....+..|++.+..+|..|++|++--|.. |......|=|.|-.+.
T Consensus 445 aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~N---YE~QLs~MSEHLasmN 500 (518)
T PF10212_consen 445 ALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRN---YEEQLSMMSEHLASMN 500 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 3445566677777788888999999999999999988865 3444555555555544
No 109
>PRK09039 hypothetical protein; Validated
Probab=70.20 E-value=1.7e+02 Score=31.98 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=26.8
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLK-------ESQRRLETSQNQLKEAELKLEELETQLA 448 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~-------e~q~~Le~s~~~L~EaE~kl~ELQ~qL~ 448 (651)
++..++.+|..++++..+|-..|. ..+..+...+.++..++..-+.|+.+++
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555544442222 2445555555555566666666666555
No 110
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.08 E-value=2.2e+02 Score=33.09 Aligned_cols=32 Identities=16% Similarity=0.398 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH
Q 006305 150 IQETVSKQNLEWESKKSELESKLVDLQKKLQT 181 (651)
Q Consensus 150 i~dav~kks~e~e~~~~elE~kl~e~~~~L~~ 181 (651)
++..|...+-.|-..-..||.+|.++...+..
T Consensus 152 ~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~ 183 (569)
T PRK04778 152 LRKSLLANRFSFGPALDELEKQLENLEEEFSQ 183 (569)
T ss_pred HHHHHHhcCccccchHHHHHHHHHHHHHHHHH
Confidence 33445555555555556666666666555543
No 111
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.03 E-value=36 Score=38.96 Aligned_cols=55 Identities=27% Similarity=0.471 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHH
Q 006305 98 EKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQE 152 (651)
Q Consensus 98 EKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~d 152 (651)
+..-.|+.+|++.+..+...+-.+|+|...++.-+|.|..||-.-||+..--|-+
T Consensus 357 e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 357 ELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455678888888888888899999999999999999999999988776654433
No 112
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.89 E-value=1.3e+02 Score=30.55 Aligned_cols=174 Identities=21% Similarity=0.317 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 006305 426 LETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKS 505 (651)
Q Consensus 426 Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~ 505 (651)
+-+-.+++.+..+.+.++|.++..+...+.... .+.....-+=.+.+--+++|-.-+..-+..-.-..+.|+-+.+
T Consensus 7 lSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk----~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 7 LSARLHKIKELQNELAELQRKLQELRKENKTLK----QLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666777777666665554431 1111111122344444455555565555555566777778888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc--HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhhhcCcchhh
Q 006305 506 KKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALS--EENIANFQKSKDELSKVKQEIE-LQHEVKLQYLAGSNQELK 582 (651)
Q Consensus 506 k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s--~E~~aKc~~LEeeL~R~k~~~~-~~~e~~~~~~~~~n~dlK 582 (651)
.+..++-.+...+.++..+...+.-|..=+.+ |.+- ++...+...++..|......+. +.+...+ .+.+
T Consensus 83 ~~r~~~~klk~~~~el~k~~~~l~~L~~L~~d-knL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL---~~k~---- 154 (194)
T PF15619_consen 83 QERELERKLKDKDEELLKTKDELKHLKKLSED-KNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLEL---ENKS---- 154 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhH----
Confidence 88889999999888888888887776654331 1111 3333344444444433332111 1111111 1111
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHhhhhc
Q 006305 583 INQEEELAVAASKFAECQKTIASLGRQLRSL 613 (651)
Q Consensus 583 iKQEkELA~AA~KLAECQkTIasLGrQLKSL 613 (651)
.-++|+.--+|..++|..|..|-..++.|
T Consensus 155 --~~rql~~e~kK~~~~~~~~~~l~~ei~~L 183 (194)
T PF15619_consen 155 --FRRQLASEKKKHKEAQEEVKSLQEEIQRL 183 (194)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456666778888888877776666555
No 113
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=69.86 E-value=2.1e+02 Score=32.75 Aligned_cols=173 Identities=18% Similarity=0.266 Sum_probs=92.5
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEM-------DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK 462 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEm-------aL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~ 462 (651)
+++.+..++--+-..|+-.+.+|...++ +|...+..-+.-+.++.++.+.+...|-.|.-..+--+....++.
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~ 154 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK 154 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666777777777777777 444444444445555555555555555555544444444555555
Q ss_pred HHHHhhhhhhhhhhhHHHHHH------HH-----HHHHHHhHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHH
Q 006305 463 AAIAARGVAESKLSVVEAEMK------TQ-----LALANKSKQAAEE----------EVKSAKSKKEAAESRLRAVEAEM 521 (651)
Q Consensus 463 a~~~~~~~~e~kl~~lE~Ei~------~e-----L~la~~s~~~a~e----------elk~~~~k~~~lEs~l~~~eaE~ 521 (651)
-....+..++...-+|-.+-+ .+ +.+-..+.. ++. .+....+.....+..+.....+|
T Consensus 155 ~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~-ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i 233 (499)
T COG4372 155 TLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQ-IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAI 233 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444333333222211 11 111111111 111 11223344555666667777788
Q ss_pred HHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHH
Q 006305 522 ETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563 (651)
Q Consensus 522 ~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~ 563 (651)
..+-.+|+.+--+|..-=..-.+-..+.+.||-+..+..+++
T Consensus 234 ~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqev 275 (499)
T COG4372 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEV 275 (499)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887776665433333444556677777777777643
No 114
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=69.85 E-value=3.3e+02 Score=35.10 Aligned_cols=179 Identities=26% Similarity=0.290 Sum_probs=88.0
Q ss_pred HHHHHHHhhcchhh-HHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHhhhhhh---hhhh-------------
Q 006305 67 EKLSAALLNVSAKE-DLVKQHAKVAEEAVS----GWEKAENELSTLKQQLKAASQKNSAL---ENRV------------- 125 (651)
Q Consensus 67 eKLs~al~~~~~Kd-~lvkqhaKvaeEAv~----GWEKAe~E~~slK~qLe~~~~~~~~~---edrv------------- 125 (651)
++|-....++.-++ .|.-+..|.+++=++ --.+.++++..++.+|+.+.+.+..+ .++|
T Consensus 475 ~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d 554 (1317)
T KOG0612|consen 475 EKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELD 554 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence 55555555555333 344455566665443 55677888888888888886666554 2222
Q ss_pred --------cchhhHHHHHHHHHHHhhH---HHHHHHHHHH---HHHhhhHhhhhHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 006305 126 --------SHLDGALKECVRQLRQARE---EQEQRIQETV---SKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASAD 191 (651)
Q Consensus 126 --------shLD~ALKECmrQLr~~rE---EqEqki~dav---~kks~e~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~ 191 (651)
.||---.++|+.|+.+.++ +-++++.... .+.+.+....+..+|.-..- ...+ ....
T Consensus 555 ~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~-~~~~--------~e~~ 625 (1317)
T KOG0612|consen 555 MRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQ-RTEI--------SEII 625 (1317)
T ss_pred hhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--------HHHH
Confidence 2233345566666665555 2222221111 11111111111111110000 0000 0122
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHH-----HHHHHHHHHHH
Q 006305 192 RDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKK-----LAKVEAECLRL 257 (651)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKK-----iakLEaECqRL 257 (651)
.++..++.+++-.+..++.+++.++. .|-...++-...+..+-+-|++--.| .-++.+||+|+
T Consensus 626 ~~l~~~i~sL~~~~~~~~~~l~k~~e---l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 626 AELKEEISSLEETLKAGKKELLKVEE---LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHhHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777776665 44445555555555554545543322 34566777777
No 115
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.62 E-value=1e+02 Score=29.05 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhhHHHhhHHHHHHHHH
Q 006305 401 LEEELENMRAEKSELEMDLKESQRRLE 427 (651)
Q Consensus 401 LEeKlEKleaEK~ELEmaL~e~q~~Le 427 (651)
|+.++..+.......+..+...+..++
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~ 34 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLE 34 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 116
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.37 E-value=2.2e+02 Score=32.86 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=60.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHH
Q 006305 484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563 (651)
Q Consensus 484 ~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~ 563 (651)
..|.-+...-..|......+......+-..+..+.+.+.++..++.....+++.=|+.-.-+++..+.|.+--+....
T Consensus 372 ~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~-- 449 (522)
T PF05701_consen 372 KALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRA-- 449 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--
Confidence 333333333334444444444445555556666666666666666666666777777777777777776554433221
Q ss_pred HHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHH
Q 006305 564 ELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQK 601 (651)
Q Consensus 564 ~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQk 601 (651)
.....++.+.+..+ |...-.+|-.+|..
T Consensus 450 ---------~~~~~~~~Vtls~e-Ey~~L~~ka~e~ee 477 (522)
T PF05701_consen 450 ---------SDSESSSKVTLSLE-EYESLSKKAEEAEE 477 (522)
T ss_pred ---------cccCCCCCeeecHH-HHHHHHHHHHHHHH
Confidence 11125566666677 66666677777765
No 117
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=69.32 E-value=2.5e+02 Score=33.39 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHH
Q 006305 507 KEAAESRLRAVEAEMETL---RSKVISLEDEVEKERALSEENIANFQKSKDEL 556 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L---~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL 556 (651)
..+|+.++..++..+..+ ......|+.+++-=|.+-..++.++++..-..
T Consensus 354 ~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 354 ESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444333 23455666666666666666666666655443
No 118
>PRK03918 chromosome segregation protein; Provisional
Probab=68.83 E-value=2.6e+02 Score=33.45 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhh
Q 006305 97 WEKAENELSTLKQQLKAASQKNSALENRVSHLDG 130 (651)
Q Consensus 97 WEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ 130 (651)
+...+.++..+..++.....+...+++.+.++..
T Consensus 195 l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~ 228 (880)
T PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEK 228 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555443
No 119
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=68.42 E-value=3.1e+02 Score=34.28 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 508 EAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 508 ~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
..+..++...+..+..+...+..++..+.
T Consensus 780 ~~l~~~i~~~~~~~~~~~~~~~~~~~~l~ 808 (1047)
T PRK10246 780 TQLEQLKQNLENQRQQAQTLVTQTAQALA 808 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 120
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.21 E-value=2.3e+02 Score=32.69 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=16.8
Q ss_pred HHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 524 LRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 524 L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
+..++..+..-..|=...-++....+.+++.+|....
T Consensus 306 le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 306 IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLD 342 (563)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333344455555555555555443
No 121
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=68.02 E-value=2.4e+02 Score=32.82 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=56.2
Q ss_pred HHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-------hhhhhhhhhHHH
Q 006305 408 MRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR-------GVAESKLSVVEA 480 (651)
Q Consensus 408 leaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~-------~~~e~kl~~lE~ 480 (651)
+-.||.+++..|...+.-+..++-.|.|....-+-||.||.-.+...-..+.++....-.+ .++.+.|+--|+
T Consensus 381 viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKee 460 (527)
T PF15066_consen 381 VILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEE 460 (527)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence 5567888888888888888888888888888888888888877777666665554433332 367777777777
Q ss_pred HHHH
Q 006305 481 EMKT 484 (651)
Q Consensus 481 Ei~~ 484 (651)
||.+
T Consensus 461 ever 464 (527)
T PF15066_consen 461 EVER 464 (527)
T ss_pred HHHH
Confidence 7653
No 122
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.98 E-value=1.2e+02 Score=28.77 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=28.8
Q ss_pred HHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006305 393 VLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFAN 451 (651)
Q Consensus 393 ~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~an 451 (651)
.+.++++-|+.-+|..+..-.+|-..=...+..+...+.+.-...+++.+||.+++.+-
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777777776555544444332222223333333333345556666666655543
No 123
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=65.61 E-value=3.7e+02 Score=34.12 Aligned_cols=144 Identities=24% Similarity=0.291 Sum_probs=68.0
Q ss_pred HHHHHhHHhHHHHHHHHHh--hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q 006305 392 EVLIHRTAELEEELENMRA--EKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG 469 (651)
Q Consensus 392 e~~~~q~~eLEeKlEKlea--EK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~ 469 (651)
.++.--..-|++.|+++.+ |+..++...-.|+.++...+...---..+.++|+.+-.-..--+..+-..+.- .
T Consensus 274 ~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~el-----l 348 (1195)
T KOG4643|consen 274 RVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMEL-----L 348 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhH-----h
Confidence 3444455566677776654 44667776666666666665555555555555554411100001110000000 0
Q ss_pred hhhhhhhhHHHH--------HHH----HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 470 VAESKLSVVEAE--------MKT----QLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 470 ~~e~kl~~lE~E--------i~~----eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
..-+..+-++.+ +.. .+.+-|..+-.+.+++++. +|+++=|+...++.|-+.|.-|+.-|++.|-+
T Consensus 349 q~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqss--s~Ee~~SK~leleke~KnLs~k~e~Leeri~q 426 (1195)
T KOG4643|consen 349 QIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSS--SYEELISKHLELEKEHKNLSKKHEILEERINQ 426 (1195)
T ss_pred hhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHH
Confidence 000000001110 111 0111222333444444444 67777777777777777777777777777766
Q ss_pred HHhhc
Q 006305 538 ERALS 542 (651)
Q Consensus 538 ER~~s 542 (651)
....-
T Consensus 427 l~qq~ 431 (1195)
T KOG4643|consen 427 LLQQL 431 (1195)
T ss_pred HHHHH
Confidence 65543
No 124
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.75 E-value=89 Score=32.08 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=16.2
Q ss_pred cchHHHHHHHHHhHHhHHHHHHHHHhh
Q 006305 385 SSIKAELEVLIHRTAELEEELENMRAE 411 (651)
Q Consensus 385 ~sl~~Ele~~~~q~~eLEeKlEKleaE 411 (651)
.+.+.-+..+..++.+|..++..+..+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345566666666666666666555433
No 125
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=64.55 E-value=1.8e+02 Score=30.02 Aligned_cols=84 Identities=18% Similarity=0.344 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHH-HHHHHHHHHHH
Q 006305 478 VEAEMKTQLALANKSKQAAEEEVKSAKSK-KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEE-NIANFQKSKDE 555 (651)
Q Consensus 478 lE~Ei~~eL~la~~s~~~a~eelk~~~~k-~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E-~~aKc~~LEee 555 (651)
++.|++.........+...++++..|... -..+..+...+..-+..|..++..|+..|..||.--.. ....+..|..+
T Consensus 50 l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~ 129 (247)
T PF06705_consen 50 LEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRE 129 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455555555555566666666666544 23344566667777778888888888888888876544 66667777777
Q ss_pred HHhhHH
Q 006305 556 LSKVKQ 561 (651)
Q Consensus 556 L~R~k~ 561 (651)
|.....
T Consensus 130 l~~l~~ 135 (247)
T PF06705_consen 130 LNELQE 135 (247)
T ss_pred HHHHHH
Confidence 776653
No 126
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.34 E-value=31 Score=37.26 Aligned_cols=71 Identities=31% Similarity=0.346 Sum_probs=47.2
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 006305 411 EKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAE 481 (651)
Q Consensus 411 EK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~E 481 (651)
...+++..|...+.+|...+..|.+.+.++..|+.+++.+...++.++.++..+.....-+..=+..|.+|
T Consensus 222 ~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 222 KLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 33344555667777777778888888889999999988888888777766665544444333333333333
No 127
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=63.66 E-value=4e+02 Score=33.85 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=43.7
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~ 456 (651)
..++.+..+.......+..++.+..++......+...+...+.++.+++..+.+|+.+|.-..+|...
T Consensus 476 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~ 543 (1201)
T PF12128_consen 476 KRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLE 543 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHH
Confidence 34455555555555555666666666666666666777777777777777788888887655555444
No 128
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=63.51 E-value=3.4e+02 Score=32.91 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=39.5
Q ss_pred HhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANK 452 (651)
Q Consensus 399 ~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ane 452 (651)
.++++++-.|+..|.-|........+|.++-...++..|.-+++-+.+|+..++
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEE 160 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEE 160 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHH
Confidence 356778888888888888777777777777777777777777777766555444
No 129
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=61.82 E-value=62 Score=27.58 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=18.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006305 484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMET 523 (651)
Q Consensus 484 ~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~ 523 (651)
.+|.-+...+-.++..|+.+....+.|+.++..++.++..
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444444444444444444433
No 130
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=60.96 E-value=1.8e+02 Score=34.99 Aligned_cols=138 Identities=20% Similarity=0.202 Sum_probs=78.5
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~ 468 (651)
..-|.++-||--|-+.++.-..-..+||..|.+-+.+|-++.-.|+--=-....|.+|.=..--.-.....++-+++-++
T Consensus 118 ~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq 197 (861)
T KOG1899|consen 118 MDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQ 197 (861)
T ss_pred cchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHh
Confidence 34455666777777777666666678999998888888777776665444444555553222212222345557777778
Q ss_pred hhhhhhhhhHHHHHHHHH--HHHHHh-HHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006305 469 GVAESKLSVVEAEMKTQL--ALANKS-KQA-AEEEVKSAKSKKEAAESRLRAVEAEMETLRS 526 (651)
Q Consensus 469 ~~~e~kl~~lE~Ei~~eL--~la~~s-~~~-a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~ 526 (651)
.+.|.|+-..|++|+.-- ..-.-- ..+ -++-+++...-...|--|+..-+.|++.|..
T Consensus 198 ~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~ 259 (861)
T KOG1899|consen 198 NETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLR 259 (861)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHH
Confidence 888888888777765321 000000 011 1223444444455555555555555555543
No 131
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=60.49 E-value=4.5e+02 Score=33.34 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 493 ~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
+..|..+++-+.+...-++.+.+.++.+...+.++++....++. ++.+||++.-+.+-+..
T Consensus 257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~-------e~~~k~~~~~ek~~~~~ 317 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELN-------EALAKVQEKFEKLKEIE 317 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 34555666666666777788888888888888888888877765 35555555555554444
No 132
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=59.28 E-value=4.2e+02 Score=32.59 Aligned_cols=113 Identities=16% Similarity=0.270 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH----------HHHHHHHHHhH
Q 006305 424 RRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM----------KTQLALANKSK 493 (651)
Q Consensus 424 ~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei----------~~eL~la~~s~ 493 (651)
..++.+..+|......+..+|+.|..++.....+...+.....+..-.+..-+.|.+++ ...|.-...+.
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666666666666666665555555544444444444443344444444433 24455555566
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 494 ~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
..+.+++-.+.....-|-..+...+.+|..|..||+.|++.+.
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777677777777888888899999999999999998884
No 133
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.12 E-value=4.4e+02 Score=33.73 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 006305 400 ELEEELENMRAEKSELEMDLKESQRRLETSQNQL-------KEAELKLEELETQLA 448 (651)
Q Consensus 400 eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L-------~EaE~kl~ELQ~qL~ 448 (651)
+||.++....+.-.+++..+...+.++......+ -++.+.+.++..+|.
T Consensus 106 ~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~ 161 (1109)
T PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQ 161 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHh
Confidence 4444444444444445555554444443333333 444444444444443
No 134
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=59.07 E-value=1e+02 Score=35.47 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=24.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305 501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534 (651)
Q Consensus 501 k~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E 534 (651)
+-.+-|+...|-||..+...+++|+.|-+++=+-
T Consensus 350 q~~~kkrqnaekql~~Ake~~eklkKKrssv~gt 383 (575)
T KOG4403|consen 350 QYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGT 383 (575)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhcchhee
Confidence 4455678888888888888888888776665443
No 135
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.47 E-value=5.1e+02 Score=33.06 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------hcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcC
Q 006305 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERA-------LSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGS 577 (651)
Q Consensus 505 ~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~-------~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~ 577 (651)
..|....+.+..++.++..+..+-..++.+|++.++ +..+....|.-|.++-.+... .-....
T Consensus 317 k~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~----------~el~~l 386 (1141)
T KOG0018|consen 317 KDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEAL----------EELEVL 386 (1141)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhH----------HHHHHH
Confidence 447788888999999999999999999999999988 445666667666666555442 113445
Q ss_pred cchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhhhhcccccccc
Q 006305 578 NQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFL 620 (651)
Q Consensus 578 n~dlKiKQEkELA~AA~KLAECQkTIasLGrQLKSLa~ledfl 620 (651)
|.+.+++|+ .|..--.+-++-+.-|-.|-.++..+.+.-++|
T Consensus 387 n~~~r~~~~-~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L 428 (1141)
T KOG0018|consen 387 NRNMRSDQD-TLDHELERRAELEARIKQLKESVERLDKRRNKL 428 (1141)
T ss_pred HHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666 555555556666666666666665555544443
No 136
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=57.07 E-value=2.3e+02 Score=28.85 Aligned_cols=66 Identities=26% Similarity=0.402 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 006305 402 EEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA 467 (651)
Q Consensus 402 EeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~ 467 (651)
.....++..+...++..+.+-..........+.+.+.++-+||.+.....+-+.+...++..+.++
T Consensus 102 k~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~ 167 (190)
T PF05266_consen 102 KDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSE 167 (190)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444545555555544445555566677788888888888777777666655444444333
No 137
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=56.81 E-value=3e+02 Score=30.09 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=48.4
Q ss_pred HHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA 448 (651)
Q Consensus 391 le~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~ 448 (651)
+..+...+.++|+|+.|-=---+-|..+=+-...+++++++.|.+.+.-+..+|.++.
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999866666666666667889999999999999999999999964
No 138
>PRK11281 hypothetical protein; Provisional
Probab=56.34 E-value=5.4e+02 Score=32.95 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=9.3
Q ss_pred hHHHHHHHHhhcHHHHHHHHH
Q 006305 531 LEDEVEKERALSEENIANFQK 551 (651)
Q Consensus 531 Le~EiekER~~s~E~~aKc~~ 551 (651)
+..+++.=+.+|+....--++
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~ 300 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEK 300 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555444443333
No 139
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.80 E-value=1.1e+02 Score=32.61 Aligned_cols=51 Identities=35% Similarity=0.460 Sum_probs=35.6
Q ss_pred HhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 396 ~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
-...++.+||+.+..||.+|-..|.+.+..++..+.+|+..+-...-|...
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677888888888998888888887777776666666555444333333
No 140
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=55.73 E-value=41 Score=38.10 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=19.8
Q ss_pred ccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHH
Q 006305 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELE 416 (651)
Q Consensus 384 ~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELE 416 (651)
..+.+.-++-+..|+.+|+.+++..+..-.+++
T Consensus 158 ~~p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~ 190 (475)
T PF10359_consen 158 NDPRRVQIELIQERLDELEEQIEKHEEKLGELE 190 (475)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 445556666666677777666666555544443
No 141
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=54.08 E-value=2.1e+02 Score=31.00 Aligned_cols=50 Identities=40% Similarity=0.557 Sum_probs=32.8
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
....++.++++++.|..++...|.....+.+....++...+....+|+.+
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777666666666666666555555544
No 142
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.66 E-value=2.1e+02 Score=34.17 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=16.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhH
Q 006305 136 VRQLRQAREEQEQRIQETVSKQNLEW 161 (651)
Q Consensus 136 mrQLr~~rEEqEqki~dav~kks~e~ 161 (651)
|.|=|..| +||.+|...++++
T Consensus 153 wSq~RY~R-----~vh~av~~~~reI 173 (652)
T COG2433 153 WSQNRYRR-----RVHGAVKRVVREI 173 (652)
T ss_pred ccHHHHHH-----HHHHHHHHHHHHH
Confidence 77777765 7899998888775
No 143
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=53.08 E-value=2.9e+02 Score=28.86 Aligned_cols=115 Identities=25% Similarity=0.340 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHH---------------HHhhhHHHHH--HHHhhcHHH-----HHHHH
Q 006305 494 QAAEEEVKSAKSKKEAAESRLRA-VEAEMETLRS---------------KVISLEDEVE--KERALSEEN-----IANFQ 550 (651)
Q Consensus 494 ~~a~eelk~~~~k~~~lEs~l~~-~eaE~~~L~~---------------Ki~~Le~Eie--kER~~s~E~-----~aKc~ 550 (651)
+.|..+|+..++|++.+|-+|+. +|.|+..|+. -+..|...+. .||.+.-|+ ..||
T Consensus 9 Q~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkY- 87 (205)
T PF12240_consen 9 QQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKY- 87 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45677778888888888888775 7777777765 1223333332 123322111 1222
Q ss_pred HHHHHHHhhHH-H--HHHHHHHHH---HhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhh
Q 006305 551 KSKDELSKVKQ-E--IELQHEVKL---QYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQL 610 (651)
Q Consensus 551 ~LEeeL~R~k~-~--~~~~~e~~~---~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQL 610 (651)
|||---|--- . .....+..+ .+..+...+-.++.+-+|-.|-.|..|-+..|-.|--||
T Consensus 88 -LEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI 152 (205)
T PF12240_consen 88 -LEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQI 152 (205)
T ss_pred -HHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2221111000 0 000111111 122222222233567789999999999999999998876
No 144
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.74 E-value=1.1e+02 Score=30.77 Aligned_cols=57 Identities=28% Similarity=0.513 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHH------HHHHHHHHHHHHHhhHHHH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEE------NIANFQKSKDELSKVKQEI 563 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E------~~aKc~~LEeeL~R~k~~~ 563 (651)
...+..++..+..++..+..+|..|+.+|+..+..-.+ .+.++.+|+.++.....++
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888888888888887655433 4777888888887777643
No 145
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=52.33 E-value=1.5e+02 Score=25.65 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=41.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 484 ~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
..|..+..-.+.-+..++.+..-+.+..++|-.+-.++..|+.++..|..|++
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555655556556677777777888999999999999999999999988854
No 146
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=52.17 E-value=1.4e+02 Score=27.05 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhh
Q 006305 192 RDLCSKLEAAEKQNSALKLELLSLVKE 218 (651)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kE 218 (651)
..|..+|+.++++|..|.-+|..+.+|
T Consensus 83 ~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 83 EQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 358899999999999999998876654
No 147
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=51.40 E-value=1.1e+02 Score=32.90 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=20.7
Q ss_pred HHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 407 NMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA 450 (651)
Q Consensus 407 KleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~a 450 (651)
..+.+|.+....+...+..++....-|...+..+.+++.++..+
T Consensus 190 ~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~ 233 (269)
T PF05278_consen 190 TREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEM 233 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 148
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=51.24 E-value=6.3e+02 Score=32.20 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=19.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLK 420 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~ 420 (651)
.|..++.-++.+++++++.++..-.++.+.+.
T Consensus 441 ~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666666666666666665555554
No 149
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.86 E-value=6.6e+02 Score=32.04 Aligned_cols=92 Identities=24% Similarity=0.361 Sum_probs=51.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhh
Q 006305 503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELK 582 (651)
Q Consensus 503 ~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlK 582 (651)
+++.+..++.+|..-..++..+...+.-+...|.. ..+...+.+.+|..+.+.... ++... .
T Consensus 481 l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~----~e~ii~~~~~se~~l~~~a~~--l~~~~------------~ 542 (1041)
T KOG0243|consen 481 LKEEKEKLKSKLQNKNKELESLKEELQQAKATLKE----EEEIISQQEKSEEKLVDRATK--LRRSL------------E 542 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--HHHHH------------H
Confidence 34445556666666666666666666655555432 245666777777777776431 11111 1
Q ss_pred hhhHHHHHHHhhhh-------HHHHHHHHHHHHhhhhc
Q 006305 583 INQEEELAVAASKF-------AECQKTIASLGRQLRSL 613 (651)
Q Consensus 583 iKQEkELA~AA~KL-------AECQkTIasLGrQLKSL 613 (651)
.-|. ++..-..|| ..||+-|--++.||..+
T Consensus 543 ~s~~-d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~ 579 (1041)
T KOG0243|consen 543 ESQD-DLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSEN 579 (1041)
T ss_pred HHHH-HHHHHHHHhhhhhccccccHHHHHHHhhhhhHH
Confidence 1122 343333333 57888888888877543
No 150
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=49.72 E-value=4.8e+02 Score=30.40 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 006305 507 KEAAESRLR 515 (651)
Q Consensus 507 ~~~lEs~l~ 515 (651)
...|+.||+
T Consensus 437 I~dLqEQlr 445 (493)
T KOG0804|consen 437 ITDLQEQLR 445 (493)
T ss_pred HHHHHHHHH
Confidence 333333333
No 151
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=48.72 E-value=3.2e+02 Score=28.03 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 006305 510 AESRLRAVEAEMETLRSKVISLEDEVEKERALS 542 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s 542 (651)
+..|...+...+..+...+..|++-|-.-|...
T Consensus 183 ~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~e 215 (240)
T PF12795_consen 183 LQLQRDLLKARIQRLQQQLQALQNLLNQKRRQE 215 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555444433
No 152
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.51 E-value=1.1e+02 Score=34.02 Aligned_cols=110 Identities=27% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHH
Q 006305 478 VEAEMKTQLALANKSK---QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKD 554 (651)
Q Consensus 478 lE~Ei~~eL~la~~s~---~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEe 554 (651)
.++||....++-+..+ +......+-+.+-.+.||.|+..++.-+..|+.|+.. ..|++-..++.-==.-++.
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e-----al~~~~n~~~~~~D~~~~~ 297 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE-----ALEKAENLEALDIDEAIEC 297 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-----HHhhhccCcCCCchhhhhc
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhhhh--cccccccc
Q 006305 555 ELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRS--LVTLDDFL 620 (651)
Q Consensus 555 eL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQLKS--La~ledfl 620 (651)
...-.++ .|-.-|+-+| |+-+|.+||+-|.- + +|+.||
T Consensus 298 ~~~l~kq--------------------------~l~~~A~d~a-ieD~i~~L~~~~r~G~i-~l~~yL 337 (365)
T KOG2391|consen 298 TAPLYKQ--------------------------ILECYALDLA-IEDAIYSLGKSLRDGVI-DLDQYL 337 (365)
T ss_pred cchHHHH--------------------------HHHhhhhhhH-HHHHHHHHHHHHhcCee-eHHHHH
No 153
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=48.41 E-value=29 Score=34.77 Aligned_cols=48 Identities=31% Similarity=0.423 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHH
Q 006305 514 LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIEL 565 (651)
Q Consensus 514 l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~ 565 (651)
|..+|.-.+.-..+--+||.|| +|| +.+.+.|+-|.+|+.-.++|+.+
T Consensus 2 LeD~EsklN~AIERnalLE~EL-dEK---E~L~~~~QRLkDE~RDLKqEl~V 49 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-DEK---ENLREEVQRLKDELRDLKQELIV 49 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHCH----------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888899999 565 45788999999999998887633
No 154
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.23 E-value=5.9 Score=46.59 Aligned_cols=51 Identities=41% Similarity=0.507 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhh----HHHhhHHHHHHHHHHHHHHHHHHHH
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKS----ELEMDLKESQRRLETSQNQLKEAEL 438 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~----ELEmaL~e~q~~Le~s~~~L~EaE~ 438 (651)
++|+..+..++..|+..++.++.+.. .+++.+...+.+++....+..+++.
T Consensus 60 ~~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~ 114 (722)
T PF05557_consen 60 RAELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEA 114 (722)
T ss_dssp -------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655544432 2333333444444444443333333
No 155
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=47.28 E-value=6.8e+02 Score=31.48 Aligned_cols=114 Identities=23% Similarity=0.284 Sum_probs=70.7
Q ss_pred hhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhh-----------------HHHH--HHHHHHHHHHH
Q 006305 120 ALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKK-----------------SELE--SKLVDLQKKLQ 180 (651)
Q Consensus 120 ~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~-----------------~elE--~kl~e~~~~L~ 180 (651)
.+++|.+.||--|+.|=| .|. ||-.-.|..|+.+ ++-++++ .-+| .++....+.-.
T Consensus 360 GiedRf~aLd~miaSC~r---lvn-EqKeLahgflAn~-keaekikDan~LPdic~eHan~lliifeN~refldikqkcd 434 (1424)
T KOG4572|consen 360 GIEDRFSALDFMIASCER---LVN-EQKELAHGFLANI-KEAEKIKDANKLPDICEEHANCLLIIFENFREFLDIKQKCD 434 (1424)
T ss_pred cHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHhh-hhcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999984 333 4555677777765 4555554 1112 23444455556
Q ss_pred HhhhHhhhhhhH-------HHHHHHHHHHHhhhhhhHHHHHhhhhhhH----HHHhhhhhhhHHHHHhH
Q 006305 181 TAKSEAAASADR-------DLCSKLEAAEKQNSALKLELLSLVKELEL----RIVERDLSTKAAETASK 238 (651)
Q Consensus 181 ~a~~e~~a~~~~-------~L~~rLes~EKen~sLkyE~~~l~kELeI----R~~Ere~s~~aAe~asK 238 (651)
.|+.|-.-..+- ....+++-.+|.++-|.|-+..+.--++| |..=.=|+.--.+..++
T Consensus 435 qaKQEiakNLhtRlk~ccfqml~adqdgek~~allel~ieale~hmdiieairdaP~lYclaVsEiVRR 503 (1424)
T KOG4572|consen 435 QAKQEIAKNLHTRLKGCCFQMLDADQDGEKDIALLELKIEALEIHMDIIEAIRDAPILYCLAVSEIVRR 503 (1424)
T ss_pred HHHHHHHHHHHhhhhhhheeehhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 666654422221 23466778899999999977776655543 44444566666666554
No 156
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=46.92 E-value=2.9e+02 Score=30.25 Aligned_cols=25 Identities=40% Similarity=0.652 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 425 RLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 425 ~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
.|..+..+|++-+..++||.+||.-
T Consensus 76 kLkes~~~l~dRetEI~eLksQL~R 100 (305)
T PF15290_consen 76 KLKESENRLHDRETEIDELKSQLAR 100 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444444445555555555443
No 157
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=46.76 E-value=2.3e+02 Score=25.92 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHH
Q 006305 509 AAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENI 546 (651)
Q Consensus 509 ~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~ 546 (651)
..+.++..++.++..|...|..|..++..||.-..+.+
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll 83 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQELL 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999887655543
No 158
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=45.38 E-value=1.9e+02 Score=25.31 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 481 EMKTQLALANKSKQAAE-EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 481 Ei~~eL~la~~s~~~a~-eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
|++++|..|=+.-+..+ .+.+.-...|..+...+..+..+...|..+|..|...+.
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44555666655544433 377778888999999999999999888888888776653
No 159
>PRK10698 phage shock protein PspA; Provisional
Probab=45.33 E-value=3.7e+02 Score=27.78 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHHHHhhHHHH
Q 006305 542 SEENIANFQKSKDELSKVKQEI 563 (651)
Q Consensus 542 s~E~~aKc~~LEeeL~R~k~~~ 563 (651)
+.....++..+|+.+.++.-++
T Consensus 161 ~~~a~~~f~rmE~ki~~~Ea~a 182 (222)
T PRK10698 161 LDEAMARFESFERRIDQMEAEA 182 (222)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888877643
No 160
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.58 E-value=3.4e+02 Score=27.19 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=0.0
Q ss_pred CCCCccccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHH-------------------HHH
Q 006305 378 DQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKE-------------------AEL 438 (651)
Q Consensus 378 d~~~~~~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~E-------------------aE~ 438 (651)
|...+...-|..-+..|...+..+..-+-.+-+.+..++..+..++..+.....+... .+.
T Consensus 19 d~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 19 DKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEE 98 (221)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006305 439 KLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVE 518 (651)
Q Consensus 439 kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~e 518 (651)
.+..++.++..+...-..+...+..+.....++.++. ....|...-..+...+..+-..+. .-.+.
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~---------~~l~ar~~~a~a~~~~~~~~~~~~-----~~~a~ 164 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR---------EELKARENAAKAQKKVNEALASFS-----VSSAM 164 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhccCC-----ccchH
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhc---HHHHHHHHHH-------HHHHHhhH
Q 006305 519 AEMETLRSKVISLEDEVEKERALS---EENIANFQKS-------KDELSKVK 560 (651)
Q Consensus 519 aE~~~L~~Ki~~Le~EiekER~~s---~E~~aKc~~L-------EeeL~R~k 560 (651)
..+..+..||..++...+-=..+. .....+..++ +++|.+.+
T Consensus 165 ~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~~~~~~~~~~~~La~LK 216 (221)
T PF04012_consen 165 DSFERMEEKIEEMEARAEASAELADSDQDLEAELEELERDSSVSEDELAALK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCcchHHHHHHHH
No 161
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=44.07 E-value=7.5e+02 Score=31.07 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=42.5
Q ss_pred hhHHHHHHHHhhcHHHHHHHHHH----HHHHHhhHHHHH-HHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHH
Q 006305 530 SLEDEVEKERALSEENIANFQKS----KDELSKVKQEIE-LQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIA 604 (651)
Q Consensus 530 ~Le~EiekER~~s~E~~aKc~~L----EeeL~R~k~~~~-~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIa 604 (651)
-+-++++|+|..-..+..+.+++ ++++++...+.. .++.....-.....-+ .+|. +-.+|-.-|++-+.-..
T Consensus 351 dk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e-~~~~--dhe~~kneL~~a~ekld 427 (1265)
T KOG0976|consen 351 DKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE-QGKK--DHEAAKNELQEALEKLD 427 (1265)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hccc--hhHHHHHHHHHHHHHHH
Confidence 34467888888777766665554 445555543221 1222222111111111 2233 33345566888888888
Q ss_pred HHHHhhhhcc
Q 006305 605 SLGRQLRSLV 614 (651)
Q Consensus 605 sLGrQLKSLa 614 (651)
.+|.-| |++
T Consensus 428 ~mgthl-~ma 436 (1265)
T KOG0976|consen 428 LMGTHL-SMA 436 (1265)
T ss_pred HHhHHH-HHH
Confidence 888877 554
No 162
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.14 E-value=3.1e+02 Score=33.24 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 006305 447 LAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKS 492 (651)
Q Consensus 447 L~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s 492 (651)
+..+.+--..+..++..+........--++..|-+|++||...+.-
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~ 647 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQ 647 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444666777777776665443
No 163
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=42.86 E-value=5.1e+02 Score=28.71 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006305 492 SKQAAEEEVKSAKSKKEAAESRLRAVEAE 520 (651)
Q Consensus 492 s~~~a~eelk~~~~k~~~lEs~l~~~eaE 520 (651)
.++....+|..++.+++.||.-+..+-.|
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666665555
No 164
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.62 E-value=1.2e+02 Score=29.33 Aligned_cols=60 Identities=30% Similarity=0.455 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLK--ESQRRLETSQNQLKEAELKLEELET 445 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~--e~q~~Le~s~~~L~EaE~kl~ELQ~ 445 (651)
.+..++..+..++..|...+..+++|...|...+. +....+...+..+..++.+|..|+.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555442 3455555555555566666665554
No 165
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.49 E-value=9.5e+02 Score=31.49 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~ 456 (651)
|-.+-+.+..+-..++.+.+-+..-..+-+.+.-+++.-|+..-.-++-+++.|.++|.....+++.-..
T Consensus 1547 L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~ 1616 (1758)
T KOG0994|consen 1547 LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATS 1616 (1758)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555666666666666666666777777777665555544433
No 166
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=41.39 E-value=6.2e+02 Score=29.88 Aligned_cols=94 Identities=19% Similarity=0.255 Sum_probs=48.1
Q ss_pred HHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 006305 404 ELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK 483 (651)
Q Consensus 404 KlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~ 483 (651)
++.+|-..+...+-...-...+.+.+..+|..++....-+..+|..++.....++.+
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE----------------------- 477 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE----------------------- 477 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 344444443333333333334556666666666666666666666666555544432
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006305 484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLR 525 (651)
Q Consensus 484 ~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~ 525 (651)
|......++ .||..|.+-..+|--+|..-..||..|+
T Consensus 478 --L~TTr~NYE---~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 478 --LETTRRNYE---EQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred --HHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222333333 4566666555555555555555555553
No 167
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=41.32 E-value=7.6e+02 Score=30.32 Aligned_cols=20 Identities=35% Similarity=0.753 Sum_probs=12.5
Q ss_pred cchhhhhhHHHHHHHhhhhHHHHHHHHH
Q 006305 578 NQELKINQEEELAVAASKFAECQKTIAS 605 (651)
Q Consensus 578 n~dlKiKQEkELA~AA~KLAECQkTIas 605 (651)
+.-+|.+.|.||- ||--||-
T Consensus 685 ~EAvK~q~Etdlr--------CQhKIAe 704 (786)
T PF05483_consen 685 DEAVKLQEETDLR--------CQHKIAE 704 (786)
T ss_pred HHHHHhHHHHHHH--------HHHHHHH
Confidence 4445556665554 9988864
No 168
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.12 E-value=7.7e+02 Score=30.30 Aligned_cols=224 Identities=25% Similarity=0.250 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHh---------------------hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRA---------------------EKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKlea---------------------EK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ 444 (651)
.+..+++.+..+..+|++-.+.++. .-+++...+..++..++.......+.......++
T Consensus 229 ~l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~ 308 (908)
T COG0419 229 ELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006305 445 TQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETL 524 (651)
Q Consensus 445 ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L 524 (651)
. .....++...+..++.........++.+++-+..++......-+.......+-.+.....+..++.++...-.-...+
T Consensus 309 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~ 387 (908)
T COG0419 309 G-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQL 387 (908)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHH
Q 006305 525 RSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIA 604 (651)
Q Consensus 525 ~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIa 604 (651)
...+.-+..+...-.....++...+.+++..+.-... ...-.....+.-+. .+..+..+ ...|+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-----------~l~~~~~~~~~~~~-~~~~~~~~----~~~~~ 451 (908)
T COG0419 388 EEAIQELKEELAELSAALEEIQEELEELEKELEELER-----------ELEELEEEIKKLEE-QINQLESK----ELMIA 451 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH-HHHHHHHH----HHHHH
Q ss_pred HHHHhhhhcccccccccCCCCcccccccccCCCcccc
Q 006305 605 SLGRQLRSLVTLDDFLIDSEKPLEHTGEGKNGGESWN 641 (651)
Q Consensus 605 sLGrQLKSLa~ledfl~d~~s~~~~~~~~~~~~e~~~ 641 (651)
.|+. +..+-|.||...+++.|+
T Consensus 452 ~l~~---------------~~~~CPvCg~~l~~~~~~ 473 (908)
T COG0419 452 ELAG---------------AGEKCPVCGQELPEEHEK 473 (908)
T ss_pred HHHh---------------CCCCCCCCCCCCCcHHHH
No 169
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.99 E-value=4.1e+02 Score=28.53 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=24.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 499 elk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
++....+.|..+.-+++.++.|.-.|..+...|.+++.+
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~ 195 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYD 195 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 333344455556666667777777776677777666654
No 170
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=40.93 E-value=5.5e+02 Score=28.62 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 006305 515 RAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSK 558 (651)
Q Consensus 515 ~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R 558 (651)
+.++.|+..|+.|+-.-|.--.-|-++-+-+-.+.+-|||-|.-
T Consensus 118 R~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 118 RFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45889999999998877766666667777777777777776643
No 171
>PRK11281 hypothetical protein; Provisional
Probab=40.75 E-value=9.1e+02 Score=31.05 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=38.7
Q ss_pred HHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 394 ~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
+.+++..++..+...+..-......|...+.+.+..+.++.++.+++.++..+|+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444556666666666666666666677777777777778888888888877766
No 172
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=40.62 E-value=5e+02 Score=27.97 Aligned_cols=136 Identities=23% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhh-----------HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhH
Q 006305 98 EKAENELSTLKQQLKAASQKNSALENRVSHLDG-----------ALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKS 166 (651)
Q Consensus 98 EKAe~E~~slK~qLe~~~~~~~~~edrvshLD~-----------ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~ 166 (651)
+|++..+..|.+|++..-.+..-+.+-|+-|-- -+-+-+|||-++++.|..-+-+. +.-+.....
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel----~e~~~~el~ 152 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDEL----NEMRQMELA 152 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhHhh-hhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHH
Q 006305 167 ELESKLVDLQKKLQTAKSEAA-ASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIK 245 (651)
Q Consensus 167 elE~kl~e~~~~L~~a~~e~~-a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvK 245 (651)
.|+.++..-...+..+.+++. ..-.+.|..+. .+|..+++|+..-.++.+=-.++
T Consensus 153 ~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~----~~N~~m~kei~~~re~i~el~e~-------------------- 208 (258)
T PF15397_consen 153 SLSRKIQEKKEEILSSAAEKTQSPMQPALLQRT----LENQVMQKEIVQFREEIDELEEE-------------------- 208 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--------------------
Q ss_pred HHHHHHHHHHHHHHHhh
Q 006305 246 KLAKVEAECLRLKAVVR 262 (651)
Q Consensus 246 KiakLEaECqRLr~l~r 262 (651)
|.+|.+|.+.|+..++
T Consensus 209 -I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 209 -IPQLRAEVEQLQAQAQ 224 (258)
T ss_pred -HHHHHHHHHHHHHhhc
No 173
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=40.34 E-value=4e+02 Score=27.12 Aligned_cols=78 Identities=23% Similarity=0.397 Sum_probs=48.5
Q ss_pred chHHHHHHHHHhHHhHHHHHH-------HHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELE-------NMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlE-------KleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E 458 (651)
+++.....+......++.+++ +++.+..+|++.+.+.+++.......-.+....+..|++..+..+.+-..++
T Consensus 100 ~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 100 SLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666665 4566666677777766666666666666677777777777666666666555
Q ss_pred HHHHH
Q 006305 459 VEMKA 463 (651)
Q Consensus 459 ~el~a 463 (651)
.+-..
T Consensus 180 ~~F~~ 184 (190)
T PF05266_consen 180 LEFQS 184 (190)
T ss_pred HHHHH
Confidence 54433
No 174
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.02 E-value=8.9e+02 Score=30.77 Aligned_cols=100 Identities=26% Similarity=0.366 Sum_probs=68.7
Q ss_pred CCCChhhhhhhHhhHhHHHHHHHhhcc---------hhhHHHHHH----HHHHHHHhhhhHHH-----HHHHHHHHHHHH
Q 006305 51 APPLDEVVNDSVKTLTEKLSAALLNVS---------AKEDLVKQH----AKVAEEAVSGWEKA-----ENELSTLKQQLK 112 (651)
Q Consensus 51 ~~~~~e~~~~~vk~LneKLs~al~~~~---------~Kd~lvkqh----aKvaeEAv~GWEKA-----e~E~~slK~qLe 112 (651)
+...+.++...|+.|-.+...-|++.. -|+..++++ .||+.+|-.|.-|+ |+|--.||++|+
T Consensus 1020 ~~~~~~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~ 1099 (1189)
T KOG1265|consen 1020 PAALNSDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLD 1099 (1189)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677778888777666665542 244444443 47888888888776 667778888887
Q ss_pred HHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006305 113 AASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQ 157 (651)
Q Consensus 113 ~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kk 157 (651)
.....+... |.-.|.=+.+-|.+||=...-|.+.|...
T Consensus 1100 kkr~e~ik~-------~~~~kdK~e~er~~rE~n~s~i~~~V~e~ 1137 (1189)
T KOG1265|consen 1100 KKRMEDIKV-------DKVIKDKAERERRKRELNSSNIKEFVEER 1137 (1189)
T ss_pred HHHHHhhhh-------ccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655443 66677777888888888888888877655
No 175
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=39.63 E-value=5.3e+02 Score=28.01 Aligned_cols=159 Identities=21% Similarity=0.268 Sum_probs=68.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQ---RRLETSQNQLKEAELKLEELETQLAFANKSKQAVEV-EMKAA 464 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q---~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~-el~a~ 464 (651)
..++++..+.+++......+..+-..++..+.... +++..=..+...+..+|+.|=++|.-.|..-..=-. ....-
T Consensus 22 eK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ee 101 (309)
T PF09728_consen 22 EKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREE 101 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555555444444333322 222222334444555555554444433322110000 00111
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHH-------HHhHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHhhhHH
Q 006305 465 IAARGVAESKLSVVEAEMKTQLALA-------NKSKQAAEEEVKSAKSKKEA----AESRLRAVEAEMETLRSKVISLED 533 (651)
Q Consensus 465 ~~~~~~~e~kl~~lE~Ei~~eL~la-------~~s~~~a~eelk~~~~k~~~----lEs~l~~~eaE~~~L~~Ki~~Le~ 533 (651)
...+.++..+....=..|...+.-- ...+....+.|+...+.|.. ++..++..+.|+.-+ ++
T Consensus 102 e~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~-------~A 174 (309)
T PF09728_consen 102 EEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLA-------EA 174 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HH
Confidence 1223333333333223344333221 22244455556666666663 334444445554444 44
Q ss_pred HHHHHHhhcHHHHHHHHHHHH
Q 006305 534 EVEKERALSEENIANFQKSKD 554 (651)
Q Consensus 534 EiekER~~s~E~~aKc~~LEe 554 (651)
.++..+........+++.+.+
T Consensus 175 Kl~q~~~~~~~e~~k~~~~~~ 195 (309)
T PF09728_consen 175 KLEQQQEEAEQEKEKAKQEKE 195 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 445555555555555555555
No 176
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.14 E-value=1.1e+02 Score=33.09 Aligned_cols=64 Identities=33% Similarity=0.358 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
+++..++.+...+...+..|...+.+..+++..|...+.+++.+.......+..+...+..|..
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4445555555555555555555555555555555555554444444444444444444444333
No 177
>PF13514 AAA_27: AAA domain
Probab=38.84 E-value=9e+02 Score=30.47 Aligned_cols=37 Identities=11% Similarity=0.276 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhh
Q 006305 94 VSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDG 130 (651)
Q Consensus 94 v~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ 130 (651)
...|.....++..+..++.....+...+..+..+|..
T Consensus 173 ~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler 209 (1111)
T PF13514_consen 173 AAEYQELQQALEEAEEELEELRAELKELRAELRRLER 209 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666555555555555555443
No 178
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.70 E-value=4.4e+02 Score=26.83 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q 006305 131 ALKECVRQLRQAREEQEQRIQETVS 155 (651)
Q Consensus 131 ALKECmrQLr~~rEEqEqki~dav~ 155 (651)
.++.+..+++..++.-.++|.+++.
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777776
No 179
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=37.96 E-value=4.3e+02 Score=32.64 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhh
Q 006305 148 QRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKEL 219 (651)
Q Consensus 148 qki~dav~kks~e~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kEL 219 (651)
+++.+.+..|-.++=.-+..++-....++-.+.+|-+ ....++-+|+..||||.-|...|+-.-.|+
T Consensus 472 k~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~-----~~k~~q~kLe~sekEN~iL~itlrQrDaEi 538 (861)
T PF15254_consen 472 KRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALV-----NVKSLQFKLEASEKENQILGITLRQRDAEI 538 (861)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHhhhhHhhhHHHHHHHHH
Confidence 3444555444444444444444444444444433322 125789999999999999998887655544
No 180
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=37.88 E-value=24 Score=26.88 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=19.4
Q ss_pred hcchhhHHHHHHHHHHHHHhhhh
Q 006305 75 NVSAKEDLVKQHAKVAEEAVSGW 97 (651)
Q Consensus 75 ~~~~Kd~lvkqhaKvaeEAv~GW 97 (651)
..+..|.+|++||.+|=|.+.+|
T Consensus 14 ~~~D~D~lvr~hA~~~Le~Le~~ 36 (36)
T PF10304_consen 14 ESTDNDDLVREHAQDALEELEAW 36 (36)
T ss_pred HHhCCcHHHHHHHHHHHHHHhcC
Confidence 34556889999999999988887
No 181
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.63 E-value=2.8e+02 Score=24.16 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
...|+.+...++.++..|..++..++.++.+
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666665554
No 182
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=36.82 E-value=1.8e+02 Score=35.16 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHH
Q 006305 513 RLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVA 592 (651)
Q Consensus 513 ~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~A 592 (651)
.+..+..|+..|+.++..+..+|.+--..+........+|..=-+|+....+.=+|+.-|..-....|-=+ +..+++.+
T Consensus 71 ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~-~~~d~~~~ 149 (766)
T PF10191_consen 71 EVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLF-ESGDIAKI 149 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-hcCCHHHH
Confidence 45567778888888888888777655444444444444444444444433345578877765544444333 33589999
Q ss_pred hhhhHHHHHHHHHHH
Q 006305 593 ASKFAECQKTIASLG 607 (651)
Q Consensus 593 A~KLAECQkTIasLG 607 (651)
|+||++=|+-+..||
T Consensus 150 a~~l~~m~~sL~~l~ 164 (766)
T PF10191_consen 150 ADRLAEMQRSLAVLQ 164 (766)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999887775
No 183
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=36.74 E-value=7.1e+02 Score=28.67 Aligned_cols=179 Identities=24% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhhhHhhHhHHHHHHHhhcchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhH--HHHH
Q 006305 58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGA--LKEC 135 (651)
Q Consensus 58 ~~~~vk~LneKLs~al~~~~~Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~A--LKEC 135 (651)
....+++|.+||.-+ |.-++.|-.-+..+|.-|-|--.+...+.+.|..... ++..-+.|+-.+ +.++
T Consensus 153 ~~~~~~sL~ekl~ll-------d~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~---A~~~~~~~l~~~~e~~~~ 222 (511)
T PF09787_consen 153 QNGAPRSLQEKLSLL-------DEALKREDGNAITAVVEFLKRTLKKEIERQELEERPK---ALRHYIEYLRESGELQEQ 222 (511)
T ss_pred HHHHHhhHHHHHHHH-------HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHH---HHHhhhHhhhhHHHHH-HHHHHHHH------HHHhhhHhhhhhhHHHHHHHHHHHHhh
Q 006305 136 VRQLRQAREEQEQRIQETV---SKQNLEWESKKSELES-KLVDLQKK------LQTAKSEAAASADRDLCSKLEAAEKQN 205 (651)
Q Consensus 136 mrQLr~~rEEqEqki~dav---~kks~e~e~~~~elE~-kl~e~~~~------L~~a~~e~~a~~~~~L~~rLes~EKen 205 (651)
++-++..-+-+++-+.+.= .++.+.-|+....|.. -+.+-... |..++.|.. .+..-+..++.++
T Consensus 223 l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~-----~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 223 LELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERD-----HLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHH-----HHHHHHHHHHHHH
Q ss_pred hhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHH
Q 006305 206 SALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLK 258 (651)
Q Consensus 206 ~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr 258 (651)
..|+.|++...-++.- +.+..++-...++.+....+.+ |+||.++.
T Consensus 298 ~~l~~e~~d~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~----e~e~~l~~ 343 (511)
T PF09787_consen 298 EQLRAELQDLEAQLEG---EQESFREQPQELSQQLEPELTT----EAELRLYY 343 (511)
T ss_pred HHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhch----HHHHHHHH
No 184
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=36.30 E-value=1.1e+03 Score=30.72 Aligned_cols=25 Identities=16% Similarity=0.128 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCC
Q 006305 247 LAKVEAECLRLKAVVRKASPNTENK 271 (651)
Q Consensus 247 iakLEaECqRLr~l~rK~lp~~d~r 271 (651)
+..|.+++..|+......-|+|++-
T Consensus 560 ~~~l~e~~~el~~e~~~~e~~~~~~ 584 (1353)
T TIGR02680 560 EEVLEEERDALRTERERLEQGTDRD 584 (1353)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCC
Confidence 5667777788888777777776643
No 185
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.06 E-value=7.3e+02 Score=28.59 Aligned_cols=135 Identities=24% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHHHHHHHHHh-hhhHHHhhHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 006305 391 LEVLIHRTAELEEELENMRA-EKSELEMDLKESQRR-LETSQNQLK-EAELKLEELETQLAFANKSKQAVEVEMKAAIAA 467 (651)
Q Consensus 391 le~~~~q~~eLEeKlEKlea-EK~ELEmaL~e~q~~-Le~s~~~L~-EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~ 467 (651)
+..+..++..|..+|..+.. +...++.+|..-... +.....++. .+++.+.++..++..-.+...
T Consensus 253 i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~------------ 320 (582)
T PF09731_consen 253 IAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFERER------------ 320 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 006305 468 RGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSK-----KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALS 542 (651)
Q Consensus 468 ~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k-----~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s 542 (651)
..+.+.+.....++|+...+- ...+..+-..++.+.... +.+.|++||..+
T Consensus 321 ------------------~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~------i~~~v~~Er~~~ 376 (582)
T PF09731_consen 321 ------------------EELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKE------IKEKVEQERNGR 376 (582)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHHHHHhhHH
Q 006305 543 ----EENIANFQKSKDELSKVKQ 561 (651)
Q Consensus 543 ----~E~~aKc~~LEeeL~R~k~ 561 (651)
.+...+...|+.-+.....
T Consensus 377 ~~~l~~~~~~~~~le~~~~~~~~ 399 (582)
T PF09731_consen 377 LAKLAELNSRLKALEEALDARSE 399 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 186
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.58 E-value=5.5e+02 Score=26.99 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhh
Q 006305 437 ELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL 475 (651)
Q Consensus 437 E~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl 475 (651)
+..|.++..+.+.....+-.-..+|+.+..+..++|.-+
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444445444444444444444433333
No 187
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=34.41 E-value=5.7e+02 Score=26.82 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=32.6
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~ 456 (651)
..+..+..++...+..+..+.+.....+......+..+......+..++..+..++.++..++....+
T Consensus 55 ~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R 122 (327)
T TIGR02971 55 AELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDR 122 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544333333333333444444444555555555555555555544443
No 188
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.02 E-value=3.3e+02 Score=24.54 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHhHHHHH------------------------------------HHHHhhhhHHHhhHHHHHHHHHHHH
Q 006305 387 IKAELEVLIHRTAELEEEL------------------------------------ENMRAEKSELEMDLKESQRRLETSQ 430 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKl------------------------------------EKleaEK~ELEmaL~e~q~~Le~s~ 430 (651)
++.++..+..+...|+..+ ..|+..+..++..+..+..+++...
T Consensus 11 l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~ 90 (105)
T cd00632 11 LQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQ 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 006305 431 NQLKEAELKLEELE 444 (651)
Q Consensus 431 ~~L~EaE~kl~ELQ 444 (651)
.++.+.+.+|.+||
T Consensus 91 ~~~~elk~~l~~~~ 104 (105)
T cd00632 91 EKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHh
No 189
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.77 E-value=9.7e+02 Score=29.36 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=31.5
Q ss_pred HHHhHHhHHHHHHHHHhhhh----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 394 LIHRTAELEEELENMRAEKS----ELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 394 ~~~q~~eLEeKlEKleaEK~----ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
..++.+-++.++-.|+-.+. +++.+-....+.++....+....-..+..+|..+..
T Consensus 60 ~~s~~~~~~~~l~~Lqns~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~ 119 (716)
T KOG4593|consen 60 SKSLLMQLEDELMQLQNSHKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKG 119 (716)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445544433333222 233444445577777788888887888777755433
No 190
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=33.23 E-value=5.9e+02 Score=26.65 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=44.6
Q ss_pred CCCCCccccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 006305 377 SDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKE 435 (651)
Q Consensus 377 ~d~~~~~~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~E 435 (651)
.|...+....|..-++.|...+..+..-+.++-+.+.-+++.+..++...+....+-+.
T Consensus 19 ~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~ 77 (225)
T COG1842 19 LDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAEL 77 (225)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445677888888888888888888888888888888888888777766665544
No 191
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=32.92 E-value=14 Score=43.46 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 006305 511 ESRLRAVEAEMETLRSKVISLE 532 (651)
Q Consensus 511 Es~l~~~eaE~~~L~~Ki~~Le 532 (651)
..+...++-|+..|..++..|+
T Consensus 383 ~~~~~~l~~e~~~L~ek~~~l~ 404 (713)
T PF05622_consen 383 SRRADKLEFENKQLEEKLEALE 404 (713)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555444
No 192
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.82 E-value=9.2e+02 Score=28.79 Aligned_cols=52 Identities=33% Similarity=0.419 Sum_probs=36.5
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAE 437 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE 437 (651)
.-..|++.+..++.++...++.++.+...+...+......++.......+.+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le 376 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE 376 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888888888888888777777766655555555544433
No 193
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=32.60 E-value=8.4e+02 Score=28.27 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=33.8
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305 397 RTAELEEELENMRAEKSELEMDLK-------ESQRRLETSQNQLKEAELKLEELETQLAFANKSK 454 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~-------e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk 454 (651)
+.++.+.++.++.-+.+.-+.+-. .-+...++++..+.+.|..|.+||.+..-.|+..
T Consensus 7 ~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 7 QKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333322 3345567777788888888888888866666655
No 194
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.45 E-value=9.2e+02 Score=28.70 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=76.6
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhh--HHHhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKS--ELEMDLKE---------SQRRLETSQNQLKEAELKLEELETQLAFANKSK 454 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~--ELEmaL~e---------~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk 454 (651)
.++.=+|++.-++..|+++...+..+-. ..|..+=. |-.+++-+..+..-....|.-...+++--++.+
T Consensus 156 ~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~ 235 (596)
T KOG4360|consen 156 FQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN 235 (596)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454567777788888877766655432 22222222 333333333333333322222233332223332
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006305 455 QAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRS 526 (651)
Q Consensus 455 ~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~ 526 (651)
. +|..-.+++..-..-+..--+|+..-|..+..+.....-+++.+..+|.....-+.+++.|++.|++
T Consensus 236 s----kLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 236 S----KLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred H----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 2223233332222222223345666688888888887888888999999999999999999998887
No 195
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=31.66 E-value=1.2e+02 Score=30.62 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=34.4
Q ss_pred HhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 409 RAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447 (651)
Q Consensus 409 eaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL 447 (651)
++|+.+|...|++..+.|.+.+.-|..-+....+|+++|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 567778888899999999999999999999999999886
No 196
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.49 E-value=4.9e+02 Score=25.90 Aligned_cols=86 Identities=23% Similarity=0.304 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQE 586 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQE 586 (651)
..++=++-...+.|+..|+..+..|..+.+.|+..-.-+..++..+|+.+....+
T Consensus 38 Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k------------------------- 92 (158)
T PF09744_consen 38 LESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERK------------------------- 92 (158)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 3444455566777777888888888888888887777777777777766655442
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhccccccccc
Q 006305 587 EELAVAASKFAECQKTIASLGRQLRSLVTLDDFLI 621 (651)
Q Consensus 587 kELA~AA~KLAECQkTIasLGrQLKSLa~ledfl~ 621 (651)
+| -.+++.||.-.--|-..+++++++..-+.
T Consensus 93 -~L---~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 93 -DL---QSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred -HH---HHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 22 14456666666666666666665544433
No 197
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.37 E-value=3.6e+02 Score=25.94 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ 561 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~ 561 (651)
.+.+|.+|.....=+..|..-|...+..++.+-..-.++..+|+.++.++.+...
T Consensus 29 ~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 29 KRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445665555555555555555555555666666666666666666666655543
No 198
>PRK02119 hypothetical protein; Provisional
Probab=31.22 E-value=2.9e+02 Score=24.07 Aligned_cols=55 Identities=29% Similarity=0.259 Sum_probs=35.9
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ 444 (651)
|...+..++.+||.++==.+-=..+|-..+..-+.+|+..+.+++.+-++|.+++
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445666778888777666666666666777777777766666666666555543
No 199
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.72 E-value=7.2e+02 Score=26.92 Aligned_cols=46 Identities=17% Similarity=0.401 Sum_probs=19.1
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKE 435 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~E 435 (651)
+++.+..++-++..|+..+..+-.++...+.+.+.+|..++.++.+
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444333333
No 200
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=30.67 E-value=3.3e+02 Score=31.33 Aligned_cols=72 Identities=26% Similarity=0.334 Sum_probs=61.6
Q ss_pred cccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006305 383 DESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457 (651)
Q Consensus 383 ~~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~ 457 (651)
++.-+..|++.++.-|.....-.+|-+.+-.+|-..|.+|..+-+..---.+|++++|+|-+.. ||++-.+.
T Consensus 10 GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~---Cn~sm~~l 81 (436)
T PF01093_consen 10 GEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEV---CNESMMAL 81 (436)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3455678999999999999999999999999999999999999998888888999998888776 77776554
No 201
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=30.62 E-value=5.9e+02 Score=25.90 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=26.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
+.-+..++.++.+|+.-++.+-.+ ++-+|.+++..+-.....-+-.+.++.+++..
T Consensus 12 ~a~~n~~~dk~EDP~~~l~q~ire---m~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~ 67 (219)
T TIGR02977 12 NSNLNALLDKAEDPEKMIRLIIQE---MEDTLVEVRTTSARTIADKKELERRVSRLEAQ 67 (219)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666555444433 22244444444444444444444444444433
No 202
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=30.59 E-value=1.3e+03 Score=29.98 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 495 ~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
.+..++.-........+..+..++.++..+..++..|+.-+.
T Consensus 879 ~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~ 920 (1353)
T TIGR02680 879 EQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVG 920 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344333333444444444444444444444444444443
No 203
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.18 E-value=9.2e+02 Score=27.97 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 006305 431 NQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK 483 (651)
Q Consensus 431 ~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~ 483 (651)
.+.-+-+++++.|..+|+.+++--..+-.++...++....+-.++-..|.|+.
T Consensus 6 s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~ 58 (459)
T KOG0288|consen 6 SQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELN 58 (459)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888887777777776666666666666655555543
No 204
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.68 E-value=1.2e+03 Score=29.26 Aligned_cols=105 Identities=23% Similarity=0.280 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHhhcHH---HHHHHHHHHHHHHhhHHHHHHHHHHHH--------
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEV----EKERALSEE---NIANFQKSKDELSKVKQEIELQHEVKL-------- 571 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~Ei----ekER~~s~E---~~aKc~~LEeeL~R~k~~~~~~~e~~~-------- 571 (651)
...+.+++..++..+.++..+|+..-..+ ..+..++.+ +..||-.|.+++.-..+.+-.++|.-.
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qads 887 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADS 887 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcc
Confidence 44455555556666666655554333222 223334332 345677777777776666555555411
Q ss_pred -------HhhhcCcchhh---hhhH-HHHHHHhhhhHHHHHHHHHHHHhhhhcc
Q 006305 572 -------QYLAGSNQELK---INQE-EELAVAASKFAECQKTIASLGRQLRSLV 614 (651)
Q Consensus 572 -------~~~~~~n~dlK---iKQE-kELA~AA~KLAECQkTIasLGrQLKSLa 614 (651)
....++|-.+| .||| +|+-.- +|+--+-|..|-+-|+-|-
T Consensus 888 e~l~ka~~~~k~~nl~lki~s~kqeqee~~v~---~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 888 ETLSKALKTVKSENLSLKIVSNKQEQEELLVL---LADQKEKIQALKEALEDLN 938 (970)
T ss_pred hHHHHHHHHhhcccchhcccchhhhHHHHHHH---HhhHHHHHHHHHHHHHHhC
Confidence 11122333333 3555 355544 6777788999998888774
No 205
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=29.27 E-value=8.5e+02 Score=27.28 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305 506 KKEAAESRLRAVEAEMETLRSKVISLEDE 534 (651)
Q Consensus 506 k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E 534 (651)
.+..++.++..++..+..|...+..++.+
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 346 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESL 346 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 206
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.88 E-value=2.8e+02 Score=26.92 Aligned_cols=64 Identities=31% Similarity=0.384 Sum_probs=44.5
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRL--ETSQNQLKEAELKLEELETQLAFAN 451 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~L--e~s~~~L~EaE~kl~ELQ~qL~~an 451 (651)
..|+..|..++..|.+++..++.+...|+..|......+ +.....+...+..+..|+..|....
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888988999999999999988888888888776554 3344445555555555555544433
No 207
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=28.73 E-value=6.9e+02 Score=26.07 Aligned_cols=135 Identities=19% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 006305 408 MRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLA 487 (651)
Q Consensus 408 leaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~ 487 (651)
|+.--.+...+++---..|-.++++|+++...+.....++..++++...-..+++.
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~------------------------ 70 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEV------------------------ 70 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH------------------------
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHH----------------------
Q 006305 488 LANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEEN---------------------- 545 (651)
Q Consensus 488 la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~---------------------- 545 (651)
.+..|.....|+..|+.||..|+.++..=|......
T Consensus 71 ----------------------ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~ 128 (202)
T PF06818_consen 71 ----------------------CENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQA 128 (202)
T ss_pred ----------------------hHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhcc
Q ss_pred -HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhh-hhHHH
Q 006305 546 -IANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKI-NQEEE 588 (651)
Q Consensus 546 -~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKi-KQEkE 588 (651)
..-...|-.++.|...++..-....-....+...+-.+ ..|||
T Consensus 129 ~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKe 173 (202)
T PF06818_consen 129 GEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKE 173 (202)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 208
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=28.21 E-value=1.8e+02 Score=24.23 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhh
Q 006305 171 KLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLV 216 (651)
Q Consensus 171 kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~ 216 (651)
+|.|+..+|.... |.-....+....+|..++.||..||-+|..++
T Consensus 5 Rl~ELe~klkaer-E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 5 RLEELERKLKAER-EARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHhH-HhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666554222 33445567889999999999999999987653
No 209
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.14 E-value=9.4e+02 Score=27.41 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhhc
Q 006305 249 KVEAECLRLKAVVRKA 264 (651)
Q Consensus 249 kLEaECqRLr~l~rK~ 264 (651)
|||-=++||+-+---.
T Consensus 70 kL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 70 KLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5566666666655433
No 210
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.12 E-value=1.4e+03 Score=29.46 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=16.3
Q ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006305 487 ALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMET 523 (651)
Q Consensus 487 ~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~ 523 (651)
..++.-.+++.-+..-.+.++..+|.++..++..++.
T Consensus 197 ~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 197 LSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444455444444444443
No 211
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=28.11 E-value=1.4e+02 Score=24.04 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305 505 SKKEAAESRLRAVEAEMETLRSKVISLEDE 534 (651)
Q Consensus 505 ~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E 534 (651)
.....|+.++..++.++..|..+|..|+.|
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 446679999999999999999999998765
No 212
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.05 E-value=6.8e+02 Score=25.80 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=36.0
Q ss_pred HHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q 006305 406 ENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG 469 (651)
Q Consensus 406 EKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~ 469 (651)
..+..+...+...+.-.+..++.....+...++.+++|+.+++.....+..+.--+..|+....
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444445555555666677777777777777666666665666655544
No 213
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.88 E-value=7.3e+02 Score=26.08 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=36.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHH
Q 006305 499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ 561 (651)
Q Consensus 499 elk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~ 561 (651)
++.++..-|......|+.....+++|-+=|..++.+-.+-+..-.-...-|..|.+++.++..
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555566666666666666666555555555444444444456677777777765
No 214
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.77 E-value=6.6e+02 Score=25.56 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 510 AESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
....+.....++.....++..+...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 117 RQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555554444444444443
No 215
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.58 E-value=1.5e+02 Score=26.83 Aligned_cols=49 Identities=29% Similarity=0.369 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHH
Q 006305 101 ENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQR 149 (651)
Q Consensus 101 e~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqk 149 (651)
+.|..++-.+||..-----.+|+|..||-+-|++-+.-=|++|-+-.+.
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888877778899999999999999887777777665443
No 216
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=27.58 E-value=7.3e+02 Score=25.94 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=31.0
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEE 442 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~E 442 (651)
.+...+..+..++..++..+..++.....++-.+...+.+++..+.++..++..+..
T Consensus 77 ~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r 133 (334)
T TIGR00998 77 NAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRR 133 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344556666666666666666666555555555555555555555544444444333
No 217
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=27.13 E-value=2.8e+02 Score=32.61 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=20.2
Q ss_pred HHHHHHhHHhHHHHHHHHHhhhhHHHhhHHH
Q 006305 391 LEVLIHRTAELEEELENMRAEKSELEMDLKE 421 (651)
Q Consensus 391 le~~~~q~~eLEeKlEKleaEK~ELEmaL~e 421 (651)
+.....++..+|.++++++.++.+++..|..
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~ 588 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGD 588 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344445666777777777777777777643
No 218
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.96 E-value=8.2e+02 Score=26.35 Aligned_cols=31 Identities=6% Similarity=0.214 Sum_probs=20.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 416 EMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 416 EmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
.-++.=.+.++...+.+|.+++..|.+.+.+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556667777777777777777776665
No 219
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=26.85 E-value=1.6e+02 Score=32.50 Aligned_cols=51 Identities=10% Similarity=0.218 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
|.+|+..++..|..|...+..++..+..-...-..+..+|++||....|.-
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 444555555545555444444444444333333446678999999887754
No 220
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.80 E-value=1e+03 Score=27.43 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=51.3
Q ss_pred cchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSK 454 (651)
Q Consensus 385 ~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk 454 (651)
..+..+++.....+..-..+..+|+.+..+++.++.....+|-.+...+.+.+..+..+-..|+....-+
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4577788888887777777777777777777777777777777777777777777777766666655555
No 221
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=26.77 E-value=1.5e+03 Score=29.24 Aligned_cols=65 Identities=20% Similarity=0.357 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhh------HHHHHHHHHHHHHHhhhHhhhhHHH
Q 006305 104 LSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAR------EEQEQRIQETVSKQNLEWESKKSEL 168 (651)
Q Consensus 104 ~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~r------EEqEqki~dav~kks~e~e~~~~el 168 (651)
|...-.||+.......-.++|+.-|+.-+++-..-++.+| |.+.+.+.+-+.-...|++.++..+
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~ 346 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDL 346 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3344455555555555666666666666665555555444 5555666666665666666555444
No 222
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.44 E-value=6.9e+02 Score=27.36 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=43.7
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL 447 (651)
|-..+.-+|.-|..+|+.++..-..+...+.+-...++..+..+..+...+.+|+.+|
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555888888888888888888888777666667777777777777777777775
No 223
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.32 E-value=73 Score=33.13 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=24.4
Q ss_pred HHhH-HHHHHHHHHHHHHHHHhhhcCCCCC
Q 006305 241 LESI-KKLAKVEAECLRLKAVVRKASPNTE 269 (651)
Q Consensus 241 lEsv-KKiakLEaECqRLr~l~rK~lp~~d 269 (651)
-+|| +||.+|++|...+|--+.|.-|||.
T Consensus 28 ~dSve~KIskLDaeL~k~~~Qi~k~R~gpa 57 (218)
T KOG1655|consen 28 SDSVEKKISKLDAELCKYKDQIKKTRPGPA 57 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4566 8899999999999999999888875
No 224
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=25.74 E-value=9.3e+02 Score=26.58 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=19.6
Q ss_pred HHHHHhhhhhhHHHHHhhhhhhHHHH
Q 006305 199 EAAEKQNSALKLELLSLVKELELRIV 224 (651)
Q Consensus 199 es~EKen~sLkyE~~~l~kELeIR~~ 224 (651)
|+.+....-|++||..|..||+-+..
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~~~ 115 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKRKA 115 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666677888888888888877654
No 225
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=25.11 E-value=1.3e+03 Score=28.21 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=8.9
Q ss_pred hHHHHHHHHHhHHhHH
Q 006305 387 IKAELEVLIHRTAELE 402 (651)
Q Consensus 387 l~~Ele~~~~q~~eLE 402 (651)
+++|++.+-+++..+.
T Consensus 398 a~~E~e~l~q~l~~~~ 413 (698)
T KOG0978|consen 398 ARAETESLLQRLKALD 413 (698)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666666555554
No 226
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=25.08 E-value=8.2e+02 Score=25.69 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=38.6
Q ss_pred HHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305 404 ELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSK 454 (651)
Q Consensus 404 KlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk 454 (651)
.+++|+....++|..|..++..+...+.....+-+.....|.+++..-.-|
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457777777777888888888888888888888888888888877644333
No 227
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=24.66 E-value=7.7e+02 Score=25.28 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=21.1
Q ss_pred HHHhHHhHHHHHHHHHhhhhHHHhhHHH
Q 006305 394 LIHRTAELEEELENMRAEKSELEMDLKE 421 (651)
Q Consensus 394 ~~~q~~eLEeKlEKleaEK~ELEmaL~e 421 (651)
+++=+.-|++|+-+|+.|+..-+..|..
T Consensus 2 visALK~LQeKIrrLELER~qAe~nl~~ 29 (178)
T PF14073_consen 2 VISALKNLQEKIRRLELERSQAEDNLKQ 29 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667899999999998877777653
No 228
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.45 E-value=5.3e+02 Score=29.44 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhhhhHHHHHhh
Q 006305 196 SKLEAAEKQNSALKLELLSLV 216 (651)
Q Consensus 196 ~rLes~EKen~sLkyE~~~l~ 216 (651)
.+++.++++...|+.++..+.
T Consensus 152 ~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444444443
No 229
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.36 E-value=3.9e+02 Score=26.96 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=47.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHH
Q 006305 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ 561 (651)
Q Consensus 504 ~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~ 561 (651)
......+......++.|+..|..++..|+.|+++=..-+..+...|+.|=.-|.|-..
T Consensus 96 ~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 96 NPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567778888899999999999999999988888888888888888877777654
No 230
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=24.31 E-value=1.4e+03 Score=28.10 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
..-|..++...++.++.+...+.-+..+|++++-.-.-+...|..|--.+.|.+
T Consensus 568 ~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 568 LEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666667777777777777777777777777654444444444545555544
No 231
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.09 E-value=2.5e+02 Score=25.17 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhh
Q 006305 165 KSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKE 218 (651)
Q Consensus 165 ~~elE~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kE 218 (651)
+.+|-.++.+|+..|. +|..|++.+..||..|+-|=.+|++=
T Consensus 18 k~~Li~ei~~LQ~sL~------------~L~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLE------------ALSDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666665554 68889999999999999998888764
No 232
>PF13514 AAA_27: AAA domain
Probab=23.93 E-value=1.5e+03 Score=28.50 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhH
Q 006305 98 EKAENELSTLKQQLKAASQKNSALENRVSHLDGA 131 (651)
Q Consensus 98 EKAe~E~~slK~qLe~~~~~~~~~edrvshLD~A 131 (651)
-....++..+..+++........++.+|..|-+.
T Consensus 739 ~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 739 REALAEIRELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666666666665443
No 233
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.88 E-value=1e+03 Score=26.52 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLED 533 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~ 533 (651)
.-.+-.-+..+..||..|--+|.-|+-
T Consensus 330 lv~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 330 LVKIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhheehh
Confidence 444555677788888888888877654
No 234
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=23.81 E-value=1.4e+02 Score=26.94 Aligned_cols=30 Identities=40% Similarity=0.586 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELE 416 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELE 416 (651)
|..|++....++++++++|+.|+..|.++|
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666655554
No 235
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.77 E-value=4.1e+02 Score=21.81 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006305 508 EAAESRLRAVEAEMETLRSKVISLEDEV 535 (651)
Q Consensus 508 ~~lEs~l~~~eaE~~~L~~Ki~~Le~Ei 535 (651)
..||.++..++.+...|...+..|..++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554444
No 236
>smart00030 CLb CLUSTERIN Beta chain.
Probab=23.27 E-value=6.4e+02 Score=26.43 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=58.7
Q ss_pred cccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305 383 DESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456 (651)
Q Consensus 383 ~~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~ 456 (651)
++..+..|++.++.=|.....-.++-+.|-..|=..|.+|+.+-+..-....+++++|+|-|.= ||++..+
T Consensus 16 G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~v---Cnetm~a 86 (206)
T smart00030 16 GSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGV---CNETMMA 86 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3456778999999988888888899999999999999999999888888888888888877653 6666633
No 237
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=23.23 E-value=5.5e+02 Score=27.20 Aligned_cols=78 Identities=27% Similarity=0.335 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhHhhh---hhhHHHHHHHHHHHHhhhhh
Q 006305 132 LKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAA---SADRDLCSKLEAAEKQNSAL 208 (651)
Q Consensus 132 LKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e~~~~L~~a~~e~~a---~~~~~L~~rLes~EKen~sL 208 (651)
.-=-||--.++.+++..- ...-+.++--+.+||.+|+++.++++.+...+.. ........-++.+-+-|..|
T Consensus 173 vAfGmRKALqae~ek~~~-----~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qL 247 (259)
T KOG4001|consen 173 VAFGMRKALQAENEKTRA-----TTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQL 247 (259)
T ss_pred HHHHHHHHHHHhhhhhHH-----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456555666665432 2233556667789999999999999887765542 22345566677777778888
Q ss_pred hHHHHH
Q 006305 209 KLELLS 214 (651)
Q Consensus 209 kyE~~~ 214 (651)
|..|.-
T Consensus 248 KaQLeg 253 (259)
T KOG4001|consen 248 KAQLEG 253 (259)
T ss_pred HHHHhh
Confidence 776653
No 238
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.18 E-value=1.9e+02 Score=27.29 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhh
Q 006305 192 RDLCSKLEAAEKQNSALKLELLSLVK 217 (651)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~k 217 (651)
.+|.+|.+++..||--||.|=+||-.
T Consensus 73 dDLSqRVdsVKEEnLKLrSENQVLGQ 98 (120)
T KOG3650|consen 73 DDLSQRVDSVKEENLKLRSENQVLGQ 98 (120)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 37889999999999999999888854
No 239
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.17 E-value=3.9e+02 Score=22.78 Aligned_cols=49 Identities=35% Similarity=0.388 Sum_probs=25.0
Q ss_pred HhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444 (651)
Q Consensus 396 ~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ 444 (651)
.++.+||.++-=.+---.+|-..+..-+.+|+..+.+++-+..++.++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566555555555555555555555666665655555555555554
No 240
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.89 E-value=4.6e+02 Score=26.48 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=41.8
Q ss_pred cchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 006305 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKE 435 (651)
Q Consensus 385 ~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~E 435 (651)
..+..|.+.+..++..|..+++.|+.|...|...+...+..|++.-.-+..
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888889999999999999999999999999998888876554433
No 241
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.63 E-value=1.5e+03 Score=27.75 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=33.9
Q ss_pred HHHHHHHhHHhHHHH-HHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 006305 390 ELEVLIHRTAELEEE-LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468 (651)
Q Consensus 390 Ele~~~~q~~eLEeK-lEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~ 468 (651)
=++.+..-+.-|-+. +.+...=+.+++.-+.-.+.+.+.-...|.++++....| ...-+.+..+++.+....
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l-------~~~ae~LaeR~e~a~d~Q 609 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSL-------RESAEKLAERYEEAKDKQ 609 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344444444555544 355544444444444444444443333333333333333 333333333444444444
Q ss_pred hhhhhhh
Q 006305 469 GVAESKL 475 (651)
Q Consensus 469 ~~~e~kl 475 (651)
..+..|+
T Consensus 610 e~L~~R~ 616 (717)
T PF10168_consen 610 EKLMKRV 616 (717)
T ss_pred HHHHHHH
Confidence 4444444
No 242
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=22.44 E-value=7.1e+02 Score=24.02 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHH
Q 006305 103 ELSTLKQQLKAASQKNSALENRVSHLDGALKECV 136 (651)
Q Consensus 103 E~~slK~qLe~~~~~~~~~edrvshLD~ALKECm 136 (651)
+.--|.++|.....++..+|-.+...+.||.||=
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888888777777888888874
No 243
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.42 E-value=1.3e+02 Score=24.14 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhh
Q 006305 192 RDLCSKLEAAEKQNSALKLELLSLVKE 218 (651)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kE 218 (651)
.+|..++..++.+|..|+.++..|..|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468888889999999999998888765
No 244
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=22.39 E-value=77 Score=33.60 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=23.7
Q ss_pred hHHhHHhHHHHHHHHHHHHHHHHHhhhcCC
Q 006305 237 SKQHLESIKKLAKVEAECLRLKAVVRKASP 266 (651)
Q Consensus 237 sKQhlEsvKKiakLEaECqRLr~l~rK~lp 266 (651)
..=..+.++||+-||.|..+||+-+=+=-.
T Consensus 114 ~~~~~~AlqKIsALEdELs~LRaQIA~IV~ 143 (253)
T PF05308_consen 114 LPANEAALQKISALEDELSRLRAQIAKIVA 143 (253)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334667889999999999999987766443
No 245
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.37 E-value=7.3e+02 Score=24.19 Aligned_cols=149 Identities=16% Similarity=0.224 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELE-MDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELE-maL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~ 465 (651)
++..+-.+.+++..++.+|.+.+.=-.-|- ++|.-.+.........+.|=...|..|+.......---.-...++-.+.
T Consensus 11 ~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~ 90 (177)
T PF13870_consen 11 LRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLS 90 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666655443222232 4555566666666666666555555555442221111111122222222
Q ss_pred HhhhhhhhhhhhHHH---HHHHHHHHHHHhHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305 466 AARGVAESKLSVVEA---EMKTQLALANKSKQAAEEEVKSAKS------------KKEAAESRLRAVEAEMETLRSKVIS 530 (651)
Q Consensus 466 ~~~~~~e~kl~~lE~---Ei~~eL~la~~s~~~a~eelk~~~~------------k~~~lEs~l~~~eaE~~~L~~Ki~~ 530 (651)
.....+...|...+. .+..+|..+......+...+..+.. -|...-..+..++..|..|..++..
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~ 170 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEI 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222221 1223344444333333333332221 1555555566666777777777766
Q ss_pred hHHHH
Q 006305 531 LEDEV 535 (651)
Q Consensus 531 Le~Ei 535 (651)
|+..|
T Consensus 171 l~~~i 175 (177)
T PF13870_consen 171 LEMRI 175 (177)
T ss_pred HHHhh
Confidence 66554
No 246
>smart00338 BRLZ basic region leucin zipper.
Probab=22.07 E-value=2e+02 Score=23.65 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
...||.++..++.+...|..+|..|+.++..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777788888888888888777777653
No 247
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.01 E-value=1.1e+03 Score=26.02 Aligned_cols=143 Identities=18% Similarity=0.314 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA 466 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~ 466 (651)
++..++....+-.+|..++..+.+..++|-....+..++....+.+-.+..+.+.++....+..|..-+..-..+....-
T Consensus 18 lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e 97 (294)
T COG1340 18 LKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKE 97 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh---hhhhhhhhHHHHHH---------------------------HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Q 006305 467 ARG---VAESKLSVVEAEMK---------------------------TQLALANKSKQAAEEEVKSAKSKKEAAESRLRA 516 (651)
Q Consensus 467 ~~~---~~e~kl~~lE~Ei~---------------------------~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~ 516 (651)
... -.-+-+..++.+|+ ++|..+.+-... +++...+=.++..
T Consensus 98 ~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~--------~~~~~el~aei~~ 169 (294)
T COG1340 98 KRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEE--------NEKLKELKAEIDE 169 (294)
T ss_pred HhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 006305 517 VEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 517 ~eaE~~~L~~Ki~~Le~Eiek 537 (651)
+..+...++.+|..|-.++..
T Consensus 170 lk~~~~e~~eki~~la~eaqe 190 (294)
T COG1340 170 LKKKAREIHEKIQELANEAQE 190 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 248
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.82 E-value=6.9e+02 Score=23.68 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006305 510 AESRLRAVEAEMETLRSKV 528 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki 528 (651)
....++.-+.|+..|+.++
T Consensus 131 ~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666554
No 249
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=21.68 E-value=5.3e+02 Score=23.95 Aligned_cols=52 Identities=31% Similarity=0.385 Sum_probs=26.8
Q ss_pred HHhHHhHHHHHHHHHhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 395 IHRTAELEEELENMRAEKSELEMDL-KESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 395 ~~q~~eLEeKlEKleaEK~ELEmaL-~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
..+...++....+|+.|..+|-..| .+|+.....-+-.-..++.+...|+.+
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~ 59 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQ 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777666 444444333333333333333334333
No 250
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=21.67 E-value=2.2e+02 Score=27.28 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 006305 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERAL 541 (651)
Q Consensus 505 ~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~ 541 (651)
++...||+..+..+.=.+.|.-.|..||..+.+||+-
T Consensus 32 arIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 32 ARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555666666666666653
No 251
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.65 E-value=1.2e+03 Score=28.41 Aligned_cols=62 Identities=21% Similarity=0.287 Sum_probs=34.1
Q ss_pred HHHHHhhhhhhHHHHH-hhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhhhcC
Q 006305 199 EAAEKQNSALKLELLS-LVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKAS 265 (651)
Q Consensus 199 es~EKen~sLkyE~~~-l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~rK~l 265 (651)
+.++.+...++++++. ..+..+||+.++.. +.-.+---|.-++|-.|+.+..+|+.|=+=-+
T Consensus 453 e~L~~~l~~~~r~~~~~~~~~rei~~~~~~I-----~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~ 515 (652)
T COG2433 453 EKLESELERFRREVRDKVRKDREIRARDRRI-----ERLEKELEEKKKRVEELERKLAELRKMRKLEL 515 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333344444444431 23344555444432 33445555666779999999999988754333
No 252
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=21.59 E-value=2.8e+02 Score=33.13 Aligned_cols=78 Identities=35% Similarity=0.445 Sum_probs=44.5
Q ss_pred ccc-chhHHHH--------HHhhcCCCCCCCCccccCCCCCCCCCccccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHH
Q 006305 346 INL-MDDFLEM--------ERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELE 416 (651)
Q Consensus 346 i~L-MDDFlEM--------EkLA~l~~~~~~~~~~~~~~~~d~~~~~~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELE 416 (651)
|+| ||||=+| ++|+.+-+.-.. +.++. +..-|+-. -|+ .+..||-.++++..||+.|-
T Consensus 465 inLp~~dFne~ls~~~lte~QLslIrDIRRR-gKNkv--AAQnCRKR------KLd----~I~nLE~ev~~l~~eKeqLl 531 (604)
T KOG3863|consen 465 INLPVDDFNEMLSKYKLTEEQLSLIRDIRRR-GKNKV--AAQNCRKR------KLD----CILNLEDEVEKLQKEKEQLL 531 (604)
T ss_pred cCCcHHHHHHHHHhcccCHHHHHHhhccccc-cccch--hccchhhh------HHH----HHHHHHHHHHHHHHHHHHHH
Confidence 444 8999999 567777555333 22222 11112211 111 56677777888888888776
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 006305 417 MDLKESQRRLETSQNQLKEA 436 (651)
Q Consensus 417 maL~e~q~~Le~s~~~L~Ea 436 (651)
.+=..+...|..++.+|.++
T Consensus 532 ~Er~~~d~~L~~~kqqls~L 551 (604)
T KOG3863|consen 532 RERDELDSTLGVMKQQLSEL 551 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666655555555555443
No 253
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=21.50 E-value=1.2e+03 Score=26.21 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=26.5
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSEL 415 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~EL 415 (651)
.+.+++..+..++..++..+..|.+++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999998765
No 254
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.33 E-value=6.2e+02 Score=25.51 Aligned_cols=35 Identities=37% Similarity=0.570 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHH
Q 006305 398 TAELEEELENMRAEKSELEMDLKESQRRLETSQNQ 432 (651)
Q Consensus 398 ~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~ 432 (651)
+..++.++..|+.++.+|+..+...+..++...-+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444433
No 255
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.95 E-value=8.1e+02 Score=24.15 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=33.1
Q ss_pred hhhhHHHHHhhhhh---------hHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhhh
Q 006305 206 SALKLELLSLVKEL---------ELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRK 263 (651)
Q Consensus 206 ~sLkyE~~~l~kEL---------eIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~rK 263 (651)
..|++|+.-+..++ +||.+-..+..+-.++-+|-..+ |+.|.++.-++|.=+=|
T Consensus 94 ~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~e----i~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 94 QELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTE----IANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34555665555544 47777777777777777664433 56666666666544333
No 256
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=20.84 E-value=6.1e+02 Score=22.70 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=35.7
Q ss_pred hcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHH
Q 006305 125 VSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQ 180 (651)
Q Consensus 125 vshLD~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e~~~~L~ 180 (651)
+..|=.|=+++-.=+..+|.+..++|.+|-...-.+.+..+...+..+.....+..
T Consensus 6 Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~ 61 (105)
T PF03179_consen 6 IQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAE 61 (105)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666666777788888888888888777777777777777666555444
No 257
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=20.71 E-value=9.6e+02 Score=24.92 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006305 492 SKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKL 571 (651)
Q Consensus 492 s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~ 571 (651)
.+..+...|.++..++..|=.+...+..-+..++.--..|. .+-.++..+....+....-.+. |-+.++
T Consensus 77 erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lk-------k~~~ey~~~l~~~eqry~aLK~----hAeekL 145 (207)
T PF05010_consen 77 ERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLK-------KCIEEYEERLKKEEQRYQALKA----HAEEKL 145 (207)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 33444444444444444444444444444443333222222 3344556666666655555553 334444
Q ss_pred HhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhhh
Q 006305 572 QYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLR 611 (651)
Q Consensus 572 ~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQLK 611 (651)
.........+..+..-|+++.--.|-==|=-|.||-++|.
T Consensus 146 ~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 146 EKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332233334444444555444444444555666666554
No 258
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.67 E-value=1.2e+03 Score=25.94 Aligned_cols=40 Identities=35% Similarity=0.400 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhh
Q 006305 191 DRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLST 230 (651)
Q Consensus 191 ~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~ 230 (651)
+.+|...||.+.+.|..|.++|+.+.-|.+=-..|||+=+
T Consensus 128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk 167 (319)
T PF09789_consen 128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYK 167 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999743
No 259
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=20.46 E-value=8e+02 Score=25.55 Aligned_cols=34 Identities=12% Similarity=0.343 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEKERA 540 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~ 540 (651)
...+++....+.+++..++.+|.++.++|.+|++
T Consensus 77 ~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~ 110 (209)
T COG5124 77 LQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKA 110 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6678999999999999999999999999999984
No 260
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=20.28 E-value=4.6e+02 Score=26.70 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Q 006305 148 QRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELEL 221 (651)
Q Consensus 148 qki~dav~kks~e~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeI 221 (651)
|.+..+...-..+.+..+.+|+..|.++.+++. +||.+......||....-+..||+.
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~----------------~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLEKEIQ----------------RLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777777888888888766654 4566666666777777777666653
No 261
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.24 E-value=7.8e+02 Score=25.60 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSE 414 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~E 414 (651)
-|...+..++++|+.+|.+++.+-..
T Consensus 96 wEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 96 WEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666778888888888888776554
No 262
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=20.24 E-value=5.2e+02 Score=26.99 Aligned_cols=62 Identities=24% Similarity=0.299 Sum_probs=47.7
Q ss_pred HhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHhhhh
Q 006305 409 RAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF--ANKSKQAVEVEMKAAIAARGV 470 (651)
Q Consensus 409 eaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~--aneSk~~~E~el~a~~~~~~~ 470 (651)
++||.+|-..|++..++|-+++.=|-.-+.-..||.+.|-+ .++-++-+.--+..+.++-.|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d~q~st~y 106 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKDVQASTAY 106 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhhhHHHH
Confidence 57888999999999999999999999999999999999754 555555554444444444433
No 263
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=20.22 E-value=9.2e+02 Score=28.23 Aligned_cols=33 Identities=39% Similarity=0.459 Sum_probs=18.5
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHH
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKES 422 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~ 422 (651)
.|+.++.++..-.++-+.++.||.+|+..|+++
T Consensus 260 sl~dlQk~Lekar~e~rnvavek~~lerkl~ea 292 (575)
T KOG4403|consen 260 SLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA 292 (575)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh
Confidence 333333344333444445667788888888753
Done!