Query 006305
Match_columns 651
No_of_seqs 105 out of 117
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:28:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.2 0.0048 1.6E-07 57.5 30.1 78 387-464 11-88 (284)
2 1c1g_A Tropomyosin; contractIl 98.2 0.0046 1.6E-07 57.6 29.0 95 387-481 4-98 (284)
3 1i84_S Smooth muscle myosin he 97.2 0.0013 4.3E-08 78.2 11.6 9 247-255 537-545 (1184)
4 1i84_S Smooth muscle myosin he 97.0 0.00039 1.3E-08 82.5 5.4 35 386-420 861-902 (1184)
5 3na7_A HP0958; flagellar bioge 96.8 0.23 8E-06 49.4 22.5 14 540-553 172-185 (256)
6 2efr_A General control protein 96.6 0.45 1.5E-05 45.3 21.0 57 495-558 74-130 (155)
7 1go4_E MAD1 (mitotic arrest de 95.6 0.026 9E-07 50.3 7.0 71 192-265 15-95 (100)
8 2v71_A Nuclear distribution pr 95.5 1.7 5.9E-05 42.6 20.2 152 387-565 15-179 (189)
9 3u1c_A Tropomyosin alpha-1 cha 95.4 0.44 1.5E-05 42.0 14.3 39 496-534 63-101 (101)
10 3vkg_A Dynein heavy chain, cyt 95.3 3.4 0.00012 54.5 27.3 156 398-560 1905-2069(3245)
11 3o0z_A RHO-associated protein 94.9 2.4 8E-05 41.0 18.7 135 58-220 11-153 (168)
12 3u59_A Tropomyosin beta chain; 94.7 0.8 2.7E-05 40.1 13.8 39 496-534 63-101 (101)
13 2efr_A General control protein 94.7 3.1 0.00011 39.5 18.9 43 494-536 108-150 (155)
14 3na7_A HP0958; flagellar bioge 94.1 5.1 0.00017 39.8 23.4 43 484-526 97-139 (256)
15 3u59_A Tropomyosin beta chain; 93.2 1 3.4E-05 39.4 11.5 73 386-458 13-85 (101)
16 3u1c_A Tropomyosin alpha-1 cha 93.1 1.7 6E-05 38.1 12.9 64 387-450 14-77 (101)
17 3vkg_A Dynein heavy chain, cyt 93.1 4.7 0.00016 53.3 21.8 143 390-535 1914-2065(3245)
18 2fxo_A Myosin heavy chain, car 92.5 6.1 0.00021 35.8 17.6 29 390-418 14-42 (129)
19 2v71_A Nuclear distribution pr 92.2 9.3 0.00032 37.4 18.8 102 430-555 16-117 (189)
20 2b9c_A Striated-muscle alpha t 90.3 5.2 0.00018 37.6 13.5 94 415-533 29-122 (147)
21 2dfs_A Myosin-5A; myosin-V, in 90.1 4.3 0.00015 48.5 15.8 10 247-256 506-515 (1080)
22 2dfs_A Myosin-5A; myosin-V, in 89.9 8.9 0.00031 45.8 18.2 25 509-533 1020-1044(1080)
23 1x79_B RAB GTPase binding effe 87.5 8.6 0.00029 34.9 12.3 98 388-527 5-106 (112)
24 1ic2_A Tropomyosin alpha chain 86.2 7.6 0.00026 32.6 10.6 66 386-451 10-75 (81)
25 3o0z_A RHO-associated protein 85.4 28 0.00094 33.7 18.2 24 510-533 109-132 (168)
26 3mq9_A Bone marrow stromal ant 85.2 23 0.00077 37.3 16.2 107 405-539 361-470 (471)
27 2fxo_A Myosin heavy chain, car 84.6 23 0.00078 32.0 17.7 51 511-561 68-118 (129)
28 3ol1_A Vimentin; structural ge 82.9 22 0.00074 32.0 12.8 90 97-210 15-104 (119)
29 3a7p_A Autophagy protein 16; c 81.5 9.6 0.00033 36.3 10.2 98 165-263 37-137 (152)
30 2b9c_A Striated-muscle alpha t 80.5 38 0.0013 31.7 15.1 51 424-481 59-109 (147)
31 3swk_A Vimentin; cytoskeleton, 80.1 9.9 0.00034 32.6 9.1 55 400-454 4-65 (86)
32 3oja_B Anopheles plasmodium-re 80.0 24 0.00081 38.0 14.1 57 496-559 528-584 (597)
33 3hnw_A Uncharacterized protein 79.5 17 0.00059 33.7 11.1 61 390-457 69-129 (138)
34 3hnw_A Uncharacterized protein 78.9 12 0.0004 34.8 9.8 62 389-450 75-136 (138)
35 3ol1_A Vimentin; structural ge 77.9 28 0.00097 31.2 11.8 36 398-433 22-57 (119)
36 2ocy_A RAB guanine nucleotide 77.7 50 0.0017 31.4 19.3 24 386-409 3-26 (154)
37 1ic2_A Tropomyosin alpha chain 77.5 24 0.00084 29.5 10.6 47 401-447 4-50 (81)
38 2eqb_B RAB guanine nucleotide 75.9 43 0.0015 29.8 12.8 60 387-446 3-62 (97)
39 2eqb_B RAB guanine nucleotide 72.7 43 0.0015 29.8 11.2 49 400-448 9-57 (97)
40 2e7s_A RAB guanine nucleotide 72.1 6.8 0.00023 36.7 6.3 25 469-493 63-91 (135)
41 3q8t_A Beclin-1; autophagy, AT 71.2 52 0.0018 28.7 13.0 80 385-464 7-86 (96)
42 3a7p_A Autophagy protein 16; c 70.9 20 0.0007 34.1 9.3 62 385-446 64-125 (152)
43 3bas_A Myosin heavy chain, str 67.5 58 0.002 27.8 11.1 33 389-421 14-46 (89)
44 2v66_B Nuclear distribution pr 65.2 80 0.0027 28.6 13.7 76 386-461 7-86 (111)
45 3bas_A Myosin heavy chain, str 63.0 72 0.0024 27.2 11.3 60 419-478 23-82 (89)
46 3qh9_A Liprin-beta-2; coiled-c 61.1 57 0.002 28.2 9.3 58 390-447 20-77 (81)
47 1x79_B RAB GTPase binding effe 61.0 66 0.0023 29.2 10.2 93 95-209 6-104 (112)
48 3swk_A Vimentin; cytoskeleton, 60.8 65 0.0022 27.5 9.7 31 441-471 3-33 (86)
49 3s4r_A Vimentin; alpha-helix, 58.3 49 0.0017 28.7 8.6 72 59-130 8-84 (93)
50 3s4r_A Vimentin; alpha-helix, 58.1 83 0.0028 27.2 10.1 79 390-471 10-89 (93)
51 3mq9_A Bone marrow stromal ant 57.8 1E+02 0.0036 32.2 12.8 70 128-207 371-440 (471)
52 2ocy_A RAB guanine nucleotide 56.7 1.4E+02 0.0047 28.5 17.6 29 384-412 15-43 (154)
53 3tnu_B Keratin, type II cytosk 53.6 1.1E+02 0.0039 27.3 10.7 54 510-563 41-98 (129)
54 1m1j_B Fibrinogen beta chain; 49.5 2.6E+02 0.0089 30.7 14.5 27 510-536 166-192 (464)
55 2v4h_A NF-kappa-B essential mo 48.6 1.6E+02 0.0054 26.8 11.8 42 520-561 63-104 (110)
56 4gkw_A Spindle assembly abnorm 48.2 1.8E+02 0.0062 27.4 18.2 56 505-560 98-153 (167)
57 3tnu_A Keratin, type I cytoske 45.7 1.1E+02 0.0037 27.6 9.2 51 512-562 45-99 (131)
58 2k48_A Nucleoprotein; viral pr 45.5 72 0.0025 28.8 7.7 20 431-450 82-101 (107)
59 2e7s_A RAB guanine nucleotide 45.1 82 0.0028 29.5 8.4 98 513-614 33-130 (135)
60 3swy_A Cyclic nucleotide-gated 43.2 84 0.0029 24.5 6.8 36 400-435 2-37 (46)
61 2no2_A HIP-I, huntingtin-inter 41.8 1.9E+02 0.0064 25.7 12.4 70 397-469 30-99 (107)
62 1gu4_A CAAT/enhancer binding p 41.5 26 0.0009 29.7 4.2 30 192-221 39-68 (78)
63 2ic6_A Nucleocapsid protein; h 41.4 89 0.0031 26.8 7.4 16 435-450 56-71 (78)
64 2oqq_A Transcription factor HY 41.4 33 0.0011 26.4 4.2 29 508-536 6-34 (42)
65 2i1j_A Moesin; FERM, coiled-co 41.3 96 0.0033 34.5 9.8 28 588-615 505-532 (575)
66 4fi5_A Nucleoprotein; structur 41.2 79 0.0027 28.8 7.4 18 433-450 71-88 (113)
67 1gk4_A Vimentin; intermediate 40.3 1.2E+02 0.004 25.6 8.0 54 499-552 2-59 (84)
68 2i1j_A Moesin; FERM, coiled-co 40.1 37 0.0013 37.7 6.3 19 544-562 508-526 (575)
69 1kd8_B GABH BLL, GCN4 acid bas 39.7 51 0.0018 24.6 4.9 33 397-429 2-34 (36)
70 3htk_A Structural maintenance 38.8 1.3E+02 0.0046 23.2 8.1 50 397-446 6-55 (60)
71 3trt_A Vimentin; cytoskeleton, 38.2 1.6E+02 0.0055 23.9 9.2 25 513-537 50-74 (77)
72 1wt6_A Myotonin-protein kinase 38.1 1.5E+02 0.0052 25.6 8.3 44 494-537 27-70 (81)
73 1d7m_A Cortexillin I; coiled-c 37.4 2.2E+02 0.0075 25.2 12.2 30 394-423 23-52 (101)
74 2ic9_A Nucleocapsid protein; h 36.9 1.1E+02 0.0037 27.3 7.4 16 435-450 56-71 (96)
75 3ni0_A Bone marrow stromal ant 36.4 1.2E+02 0.004 27.1 7.5 50 514-563 34-83 (99)
76 1hjb_A Ccaat/enhancer binding 36.3 33 0.0011 29.7 4.0 29 192-220 39-67 (87)
77 1kd8_A GABH AIV, GCN4 acid bas 36.2 53 0.0018 24.5 4.5 32 397-428 2-33 (36)
78 4etp_A Kinesin-like protein KA 34.7 93 0.0032 33.1 8.1 53 397-449 4-56 (403)
79 1m1j_C Fibrinogen gamma chain; 33.5 96 0.0033 33.5 7.9 78 76-172 23-100 (409)
80 3jsv_C NF-kappa-B essential mo 33.2 2.6E+02 0.0088 24.8 10.0 44 518-561 39-82 (94)
81 1ci6_A Transcription factor AT 32.5 71 0.0024 25.7 5.2 31 507-537 25-55 (63)
82 3oja_A Leucine-rich immune mol 31.8 4.7E+02 0.016 27.4 14.1 43 397-439 354-396 (487)
83 1wt6_A Myotonin-protein kinase 31.7 2.5E+02 0.0086 24.2 9.2 26 507-532 47-72 (81)
84 1fxk_A Prefoldin; archaeal pro 31.7 2.3E+02 0.0079 23.8 10.5 25 425-449 9-33 (107)
85 3oja_A Leucine-rich immune mol 31.4 4.7E+02 0.016 27.4 12.7 39 518-556 448-486 (487)
86 1deq_A Fibrinogen (alpha chain 30.7 5.4E+02 0.019 27.8 14.2 44 495-539 117-161 (390)
87 3mq7_A Bone marrow stromal ant 30.3 3.3E+02 0.011 25.1 14.0 27 513-539 72-98 (121)
88 3swf_A CGMP-gated cation chann 29.6 1.3E+02 0.0045 25.5 6.5 45 399-446 3-47 (74)
89 1t3j_A Mitofusin 1; coiled coi 28.9 1.3E+02 0.0044 26.7 6.6 57 149-221 33-89 (96)
90 2v66_B Nuclear distribution pr 28.8 3.3E+02 0.011 24.6 16.0 98 397-536 4-101 (111)
91 1x8y_A Lamin A/C; structural p 28.5 2.7E+02 0.0092 23.5 8.7 45 389-436 3-47 (86)
92 4h22_A Leucine-rich repeat fli 28.4 3E+02 0.01 24.7 8.9 51 399-449 5-55 (103)
93 3ghg_A Fibrinogen alpha chain; 28.1 4.1E+02 0.014 30.0 11.7 26 512-537 131-156 (562)
94 2zqm_A Prefoldin beta subunit 26.1 3E+02 0.01 23.3 10.5 81 414-537 3-102 (117)
95 1deq_A Fibrinogen (alpha chain 26.0 6.5E+02 0.022 27.2 14.1 93 102-221 67-159 (390)
96 3tnu_A Keratin, type I cytoske 25.6 3.6E+02 0.012 24.1 11.2 61 386-449 35-95 (131)
97 3mov_A Lamin-B1; LMNB1, B-type 25.6 1.1E+02 0.0037 26.7 5.5 39 499-537 13-55 (95)
98 1dh3_A Transcription factor CR 25.2 58 0.002 25.7 3.4 28 192-219 25-52 (55)
99 2lw1_A ABC transporter ATP-bin 25.1 3.1E+02 0.01 23.0 8.7 25 389-413 22-46 (89)
100 3tnu_B Keratin, type II cytosk 25.1 3.7E+02 0.013 24.0 12.7 61 386-449 33-93 (129)
101 4h22_A Leucine-rich repeat fli 24.6 3.8E+02 0.013 24.0 9.9 62 387-448 21-82 (103)
102 4dzn_A Coiled-coil peptide CC- 24.3 75 0.0026 22.8 3.4 24 193-216 6-29 (33)
103 1gd2_E Transcription factor PA 23.7 1.5E+02 0.0051 24.7 5.7 41 169-221 28-68 (70)
104 3mq7_A Bone marrow stromal ant 23.5 4.4E+02 0.015 24.3 10.3 74 166-261 28-101 (121)
105 1jnm_A Proto-oncogene C-JUN; B 22.8 78 0.0027 25.2 3.8 38 397-434 23-60 (62)
106 2oto_A M protein; helical coil 22.7 4.4E+02 0.015 24.1 18.5 30 388-417 28-57 (155)
107 2lw1_A ABC transporter ATP-bin 21.4 2.2E+02 0.0075 23.9 6.5 27 395-421 21-47 (89)
108 3i00_A HIP-I, huntingtin-inter 21.0 3.1E+02 0.01 24.9 7.7 51 510-560 31-81 (120)
109 3c3g_A Alpha/beta peptide with 20.9 1.3E+02 0.0046 22.0 4.2 27 398-424 2-28 (33)
110 2jee_A YIIU; FTSZ, septum, coi 20.7 3.9E+02 0.013 23.0 7.9 53 514-572 8-67 (81)
111 4fla_A Regulation of nuclear P 20.2 5.4E+02 0.018 24.1 13.2 98 351-455 41-138 (152)
112 1ik9_A DNA repair protein XRCC 20.2 5.5E+02 0.019 25.2 10.0 73 104-187 134-206 (213)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.16 E-value=0.0048 Score=57.51 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA 464 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~ 464 (651)
++.+++.+..++..++.++..++.+...++..+..++..+......+..+...+..++.++..+......++.++..+
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASL 88 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666777777777777777776676666666666666666666666666666666555555554444444333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.16 E-value=0.0046 Score=57.60 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA 466 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~ 466 (651)
|+..+..+..++..+...+..+..+...++..+......+......+..+...+..+..++..+......+..++.....
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666666666666666666666666666666666655555555555555555555
Q ss_pred hhhhhhhhhhhHHHH
Q 006305 467 ARGVAESKLSVVEAE 481 (651)
Q Consensus 467 ~~~~~e~kl~~lE~E 481 (651)
....+..++..+..+
T Consensus 84 ~~~~~~~~~~~~~~~ 98 (284)
T 1c1g_A 84 DVASLNRRIQLFEEE 98 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.19 E-value=0.0013 Score=78.25 Aligned_cols=9 Identities=44% Similarity=0.859 Sum_probs=6.9
Q ss_pred HHHHHHHHH
Q 006305 247 LAKVEAECL 255 (651)
Q Consensus 247 iakLEaECq 255 (651)
++-|+.||.
T Consensus 537 l~lLdee~~ 545 (1184)
T 1i84_S 537 LALLDEECW 545 (1184)
T ss_dssp HHHHHHTTS
T ss_pred hhhhhhhhC
Confidence 577888885
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.05 E-value=0.00039 Score=82.55 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=17.1
Q ss_pred chHHHHHHHHHhHH-------hHHHHHHHHHhhhhHHHhhHH
Q 006305 386 SIKAELEVLIHRTA-------ELEEELENMRAEKSELEMDLK 420 (651)
Q Consensus 386 sl~~Ele~~~~q~~-------eLEeKlEKleaEK~ELEmaL~ 420 (651)
.++.+++.+..++. +++.++..++.++.++...|.
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444 444445555555544444443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.84 E-value=0.23 Score=49.44 Aligned_cols=14 Identities=0% Similarity=0.100 Sum_probs=8.4
Q ss_pred hhcHHHHHHHHHHH
Q 006305 540 ALSEENIANFQKSK 553 (651)
Q Consensus 540 ~~s~E~~aKc~~LE 553 (651)
.+..+++..|..+-
T Consensus 172 ~i~~~lL~~Yerir 185 (256)
T 3na7_A 172 KTEPKIYSFYERIR 185 (256)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 34666667766553
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.56 E-value=0.45 Score=45.32 Aligned_cols=57 Identities=26% Similarity=0.395 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 006305 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSK 558 (651)
Q Consensus 495 ~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R 558 (651)
.-+++|+.+..+.+..|.|...++.-+..|..-|+-|+.++..++. +|..+.++|..
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Ke-------k~~~i~~eLd~ 130 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL-------KYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999998864 44444444443
No 7
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.58 E-value=0.026 Score=50.34 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhh----------HHHHHhHHhHHhHHHHHHHHHHHHHHHHHh
Q 006305 192 RDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTK----------AAETASKQHLESIKKLAKVEAECLRLKAVV 261 (651)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~----------aAe~asKQhlEsvKKiakLEaECqRLr~l~ 261 (651)
..|..++++++.||..|+-++..|.=+|+=|+.--+|+.. =|..|..|+- +.|.+|.+||.|||..+
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~---~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLR---EDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999988887888662 2444544443 77899999999999999
Q ss_pred hhcC
Q 006305 262 RKAS 265 (651)
Q Consensus 262 rK~l 265 (651)
|+--
T Consensus 92 ~~lE 95 (100)
T 1go4_E 92 RAME 95 (100)
T ss_dssp TTCC
T ss_pred HHHh
Confidence 8743
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.53 E-value=1.7 Score=42.55 Aligned_cols=152 Identities=20% Similarity=0.262 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA 466 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~ 466 (651)
++.....+..+...++..|......=.+||..| ..+|+.+..+......++..|..+++........+..
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~EL---E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~------- 84 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAEL---EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA------- 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 445555666677777777766555555555544 3345555555555556666666665554444433222
Q ss_pred hhhhhhhhhhhHHHHHHH-------------HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006305 467 ARGVAESKLSVVEAEMKT-------------QLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLED 533 (651)
Q Consensus 467 ~~~~~e~kl~~lE~Ei~~-------------eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~ 533 (651)
+..+.++.|+.||.. .|..+|... ..+.+.+.+-+..++.-.+....++-.|+.
T Consensus 85 ---e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl----------Er~~R~~~~SleD~e~kln~aiEr~alLE~ 151 (189)
T 2v71_A 85 ---QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL----------ERAKRATIMSLEDFEQRLNQAIERNAFLES 151 (189)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 222334444444332 133333332 234566777788888888899999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHH
Q 006305 534 EVEKERALSEENIANFQKSKDELSKVKQEIEL 565 (651)
Q Consensus 534 EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~ 565 (651)
|+. ||. .....|+-|.+++.-.+.++.+
T Consensus 152 El~-EKe---~l~~~~QRLkdE~rDLk~El~v 179 (189)
T 2v71_A 152 ELD-EKE---SLLVSVQRLKDEARDLRQELAV 179 (189)
T ss_dssp HHH-HHH---HHHCCC----------------
T ss_pred HHH-HHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 998 343 4566777777777776664433
No 9
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.44 E-value=0.44 Score=41.98 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305 496 AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534 (651)
Q Consensus 496 a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E 534 (651)
+.+.|...+.+....+..+..+|+++..|..||.+||++
T Consensus 63 ~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 63 VLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 344555566666668888999999999999999999863
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.28 E-value=3.4 Score=54.55 Aligned_cols=156 Identities=18% Similarity=0.268 Sum_probs=71.0
Q ss_pred HHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 006305 398 TAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSV 477 (651)
Q Consensus 398 ~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~ 477 (651)
...+.+|-..+...+.-++.-|. +|..+..+..++...|+++|.+|...++.- +.-+..+..+..+++.+-..
T Consensus 1905 ~~ll~~K~~el~~~~~rl~~GL~----KL~et~~~V~~l~~~L~~~~~~L~~k~~ea---~~~l~~i~~~~~~ae~~k~~ 1977 (3245)
T 3vkg_A 1905 VLLINEKRDQLEEEQLHLNIGLK----KLRDTEAQVKDLQVSLAQKNRELDVKNEQA---NQKLKQMVQDQQAAEIKQKD 1977 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554443 334444455555555555555544433322 22233333333333322211
Q ss_pred ---HHHHHHHHHHHHHHhHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHH
Q 006305 478 ---VEAEMKTQLALANKSKQAAEEEVKS------AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIAN 548 (651)
Q Consensus 478 ---lE~Ei~~eL~la~~s~~~a~eelk~------~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aK 548 (651)
.+.++.++-.-++.-+..++.+|.. ..+..+.+|.++..+++++.....++..|++.|.+=+..-++...+
T Consensus 1978 v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~e 2057 (3245)
T 3vkg_A 1978 ARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE 2057 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333334444444444432 1234444555555555555555555555555555555555555666
Q ss_pred HHHHHHHHHhhH
Q 006305 549 FQKSKDELSKVK 560 (651)
Q Consensus 549 c~~LEeeL~R~k 560 (651)
.+.|+.++....
T Consensus 2058 k~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2058 TEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655544
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.93 E-value=2.4 Score=41.00 Aligned_cols=135 Identities=20% Similarity=0.284 Sum_probs=85.7
Q ss_pred hhhhHhhHhHHHHHHHhhcchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHH
Q 006305 58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVR 137 (651)
Q Consensus 58 ~~~~vk~LneKLs~al~~~~~Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmr 137 (651)
+++++..+|+||-+- -|++.-|-|..+|+..-.++++.. +..+.++++.|..+--.-=+
T Consensus 11 LekQL~E~n~kLk~E------------------sE~~~rlkK~~tEl~k~~~~~E~~---~rELq~~~~~L~~~k~~Lek 69 (168)
T 3o0z_A 11 LQKQLEEANDLLRTE------------------SDTAVRLRKSHTEMSKSISQLESL---NRELQERNRILENSKSQTDK 69 (168)
T ss_dssp THHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 678899999998654 577788888888887777777643 45566777777666443333
Q ss_pred HHHHh--hHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhHhh-h-hhhHHHHHHHHHHHHhhhhhh----
Q 006305 138 QLRQA--REEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAA-A-SADRDLCSKLEAAEKQNSALK---- 209 (651)
Q Consensus 138 QLr~~--rEEqEqki~dav~kks~e~e~~~~elE~kl~e~~~~L~~a~~e~~-a-~~~~~L~~rLes~EKen~sLk---- 209 (651)
++-.+ .=++|++-.--- ..+..+|+.++.-|...|...+.--. + .....|..|+-.+||+.+++-
T Consensus 70 e~~~LQa~L~qEr~~r~q~-------se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~ 142 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRGHD-------SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLN 142 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33322 222232222111 22335566666666666665543211 1 223679999999999999999
Q ss_pred HHHHHhhhhhh
Q 006305 210 LELLSLVKELE 220 (651)
Q Consensus 210 yE~~~l~kELe 220 (651)
|+|.+++--++
T Consensus 143 ~eLKalQ~~~e 153 (168)
T 3o0z_A 143 YKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88988876554
No 12
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.71 E-value=0.8 Score=40.08 Aligned_cols=39 Identities=36% Similarity=0.469 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305 496 AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534 (651)
Q Consensus 496 a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E 534 (651)
+.+.|...+.++...+..+..+|+++..|..+|-+||++
T Consensus 63 ~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEEe 101 (101)
T 3u59_A 63 YSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 344555555666667888889999999999999998753
No 13
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.65 E-value=3.1 Score=39.55 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 494 ~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
.-++..|.+.+.+|..+...|..+-.++..+..++.-|+++|.
T Consensus 108 d~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 108 DDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 4566777778888888888888888899998888888888875
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.12 E-value=5.1 Score=39.82 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006305 484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRS 526 (651)
Q Consensus 484 ~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~ 526 (651)
+++..+..-...++.+|..+.+....++..+..++..+..+..
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~ 139 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK 139 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333333333
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.21 E-value=1 Score=39.45 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=49.3
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E 458 (651)
.|+.|.+.++-+...++.+++..+.....++-.+.-.+..+..+...+-.++..|.+.+..|..+.+....+|
T Consensus 13 ~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 13 MLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777777777767677766666666666666666666665555444333
No 16
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.11 E-value=1.7 Score=38.14 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA 450 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~a 450 (651)
|+.|.+.++-+...++.+++..+.....++-.+...+..+..+...|-.++..|.+.+..|..+
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554444444444444444444444444444444443333
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.08 E-value=4.7 Score=53.31 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=68.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA-- 467 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~-- 467 (651)
|+...+.++.-=-.||..-.....+|...|...+-+|+... .+++..|.++..+-..|++.+..++.....+...
T Consensus 1914 el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~---~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ 1990 (3245)
T 3vkg_A 1914 QLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN---EQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNK 1990 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333334444455555666666666666665543 3677778888887777777766554333222222
Q ss_pred -----hhhhhhhhhhHH--HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006305 468 -----RGVAESKLSVVE--AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV 535 (651)
Q Consensus 468 -----~~~~e~kl~~lE--~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Ei 535 (651)
+.+++..|..++ .=.+.+|+.|+.....|..+|....+....++.++..++++...+..+...|+.++
T Consensus 1991 ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 1991 EIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222111 00223344444444444444444444444444444444444444444444444443
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.45 E-value=6.1 Score=35.84 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=14.8
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhh
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMD 418 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEma 418 (651)
|+..+...+..|.+++++.+..+.+|+..
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~ 42 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEK 42 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544443
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.23 E-value=9.3 Score=37.45 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHH
Q 006305 430 QNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEA 509 (651)
Q Consensus 430 ~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~ 509 (651)
+.......+.+.+|+.+|+.-..|-.. ||.||.++|.-+.+-+..+...+..+..-+..
T Consensus 16 k~~~~~~~q~~~~le~El~EFqesSrE---------------------LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~ 74 (189)
T 2v71_A 16 KELSMKYKQSFQEARDELVEFQEGSRE---------------------LEAELEAQLVQAEQRNRDLQADNQRLKYEVEA 74 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444432 45566666666666555432222222211222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHH
Q 006305 510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDE 555 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEee 555 (651)
+-.++.....|..+ .|..|+.+|..=|.....+..++++||-.
T Consensus 75 ~k~K~~~~~~e~~~---~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 75 LKEKLEHQYAQSYK---QVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222111 35566666666666677777777777744
No 20
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=90.28 E-value=5.2 Score=37.55 Aligned_cols=94 Identities=26% Similarity=0.360 Sum_probs=53.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHH
Q 006305 415 LEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQ 494 (651)
Q Consensus 415 LEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~ 494 (651)
.+.+..++.+......++-..-+.++..|..||..|...-..+.-++ .++.+||.+++
T Consensus 29 aek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKy-------eE~~RKl~~~E--------------- 86 (147)
T 2b9c_A 29 AEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY-------EEVARKLVIIE--------------- 86 (147)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHH---------------
Confidence 34444455555666666666777777777777665544433332222 22344443333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006305 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLED 533 (651)
Q Consensus 495 ~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~ 533 (651)
..|.++.+.....|+++..++.++..+.+.+.+|+.
T Consensus 87 ---~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 87 ---SDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333444455555777777777777777777777763
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.11 E-value=4.3 Score=48.47 Aligned_cols=10 Identities=30% Similarity=0.581 Sum_probs=7.3
Q ss_pred HHHHHHHHHH
Q 006305 247 LAKVEAECLR 256 (651)
Q Consensus 247 iakLEaECqR 256 (651)
++-|+.||..
T Consensus 506 l~lLdee~~~ 515 (1080)
T 2dfs_A 506 LDLLDEECKM 515 (1080)
T ss_dssp HHHHHHHTTS
T ss_pred eeeccccccC
Confidence 5778888853
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.92 E-value=8.9 Score=45.83 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q 006305 509 AAESRLRAVEAEMETLRSKVISLED 533 (651)
Q Consensus 509 ~lEs~l~~~eaE~~~L~~Ki~~Le~ 533 (651)
.|+.++..++.|...|...++.|+.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555553
No 23
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=87.53 E-value=8.6 Score=34.94 Aligned_cols=98 Identities=22% Similarity=0.325 Sum_probs=62.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKE----SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA 463 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e----~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a 463 (651)
+...+.+......|.+.|+++.+++.+|+-.+.. +..+......+...+|+.|.+||.-+..+
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~------------- 71 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA------------- 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 4566778888899999999999999999998875 55677777888888888888887663222
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006305 464 AIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK 527 (651)
Q Consensus 464 ~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~K 527 (651)
+..+..+|.-+..+++.+=.+|..++.|...|..|
T Consensus 72 -----------------------------q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 72 -----------------------------KRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 23344555666666667777777777777777655
No 24
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.17 E-value=7.6 Score=32.63 Aligned_cols=66 Identities=20% Similarity=0.347 Sum_probs=37.3
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFAN 451 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~an 451 (651)
.|+.|++.+.-+...++.+++..+.....++-.+...+..+..+...|..++..|...+..|..+.
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555555555555555555555555555555555555555554443
No 25
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.40 E-value=28 Score=33.66 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 006305 510 AESRLRAVEAEMETLRSKVISLED 533 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki~~Le~ 533 (651)
+-.++..++++.+.|..+|..||.
T Consensus 109 ~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 109 LKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566667777777766543
No 26
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=85.19 E-value=23 Score=37.29 Aligned_cols=107 Identities=26% Similarity=0.348 Sum_probs=56.9
Q ss_pred HHHHHhhhhHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 006305 405 LENMRAEKSELEMDLKESQRRLETSQNQL---KEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAE 481 (651)
Q Consensus 405 lEKleaEK~ELEmaL~e~q~~Le~s~~~L---~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~E 481 (651)
+.++-.-+...+.+|..++.+++..-.++ .++.+.-..||.+|+.+++....++.+ +.+.-.+|.-|.+
T Consensus 361 ~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~- 432 (471)
T 3mq9_A 361 VINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQ-------AATANHTVMALMA- 432 (471)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHH-------hhhcchhHHHHHH-
Confidence 33333333344555555444443332222 245666777888888888777554422 2222222211111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305 482 MKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKER 539 (651)
Q Consensus 482 i~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER 539 (651)
++..+...-+.+++++|.||.+|..++..++.+|+.=|
T Consensus 433 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 433 --------------------SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11122222345777888888888888888888887544
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.56 E-value=23 Score=32.04 Aligned_cols=51 Identities=27% Similarity=0.333 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHH
Q 006305 511 ESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ 561 (651)
Q Consensus 511 Es~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~ 561 (651)
|.+...+.+.-..|..+|.-|+..++.+-....++.+..++|+.+++-.+.
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444455555555666666666777777777777766664
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.90 E-value=22 Score=31.99 Aligned_cols=90 Identities=21% Similarity=0.299 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHH
Q 006305 97 WEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQ 176 (651)
Q Consensus 97 WEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e~~ 176 (651)
|..=++++..|++|+++++..+..++-.+.++-+++... |. |=|.|. ..+..+|+.|..+.
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edf----k~-KyE~E~--------------~~r~~~E~di~~lr 75 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL----RE-KLQEEM--------------LQREEAENTLQSFR 75 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-hhHHHH--------------HHHHHHHHHHHHhh
Confidence 445578899999999999999988777666665555443 21 112222 13456788888888
Q ss_pred HHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhH
Q 006305 177 KKLQTAKSEAAASADRDLCSKLEAAEKQNSALKL 210 (651)
Q Consensus 177 ~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLky 210 (651)
+.++.+. ...-+|..+++++..|+.+||.
T Consensus 76 K~lD~~~-----l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 76 QDVDNAS-----LARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 8887554 4557899999999999999984
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.48 E-value=9.6 Score=36.32 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhH
Q 006305 165 KSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESI 244 (651)
Q Consensus 165 ~~elE~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsv 244 (651)
|..+|.++.++....-.+...|.++.+..+...+..+++++..|+-++..+..+|.-++---+.=. ..=.+-.-|+..+
T Consensus 37 Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~-DEl~aLqlq~n~l 115 (152)
T 3a7p_A 37 RNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLN-AALISGTIENNVL 115 (152)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 466788888887776655555555555566666777777777776666666666555543333222 2223334444444
Q ss_pred -HHHHHHHHHHHHH--HHHhhh
Q 006305 245 -KKLAKVEAECLRL--KAVVRK 263 (651)
Q Consensus 245 -KKiakLEaECqRL--r~l~rK 263 (651)
.|+.+|++|=+.| |-|.||
T Consensus 116 E~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 116 QQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999998766 445444
No 30
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=80.51 E-value=38 Score=31.70 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 006305 424 RRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAE 481 (651)
Q Consensus 424 ~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~E 481 (651)
.+|...+....+++.+..+....|..+......+ +.....+++++.-|+.+
T Consensus 59 ~qLkeak~~aeeadrKyeE~~RKl~~~E~dLera-------eeRae~aE~k~~eLEee 109 (147)
T 2b9c_A 59 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERA-------EERAELSEGKCAELEEE 109 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3444445555555666666666555544444443 33444445555333333
No 31
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=80.06 E-value=9.9 Score=32.60 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhhhHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305 400 ELEEELENMRAEKSELEMDLKESQ-------RRLETSQNQLKEAELKLEELETQLAFANKSK 454 (651)
Q Consensus 400 eLEeKlEKleaEK~ELEmaL~e~q-------~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk 454 (651)
+|..+++.+..++.-++..+..++ ..|+.=...-..+|+.+.-|..-++.+.-.+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r 65 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444455555555555555554444 4444444444446666666666655555544
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.01 E-value=24 Score=37.98 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 006305 496 AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559 (651)
Q Consensus 496 a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~ 559 (651)
.++++....+.|+.++.+...++..++..+.++..|..|+..- .++.+.|++++.+.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~-------~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK-------RQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTC--
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHhcCC
Confidence 3344445556666677777777777777777766666655443 45666666666654
No 33
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.48 E-value=17 Score=33.66 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=28.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~ 457 (651)
|+-.+..+...|+..++.+..|-..|...| -..+.++.++.+.+++|+.+++..++.....
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el-------~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHEL-------IAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455444444444444444444 4444444444455555555544444444333
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.91 E-value=12 Score=34.76 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=49.0
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA 450 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~a 450 (651)
.+.+.+..++.+++.++..++-+-..+.+.+..++.+++..+..+.+.+.++.+|+..++..
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566677777788888888888888888888888888888888888888888888876543
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=77.92 E-value=28 Score=31.21 Aligned_cols=36 Identities=14% Similarity=0.343 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHH
Q 006305 398 TAELEEELENMRAEKSELEMDLKESQRRLETSQNQL 433 (651)
Q Consensus 398 ~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L 433 (651)
+..|..++..+..+++.|+..+..++..++..+.++
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~Ky 57 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555566666666666666665555555444
No 36
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.71 E-value=50 Score=31.45 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=14.2
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMR 409 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKle 409 (651)
+|.--|-.+|.+...|+..|-.+.
T Consensus 3 sLStKLI~Ain~qs~LeD~L~~~R 26 (154)
T 2ocy_A 3 ALSTQLIESVDKQSHLEEQLNKSL 26 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhccHHHHHHHHH
Confidence 345556666777777766654433
No 37
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.54 E-value=24 Score=29.50 Aligned_cols=47 Identities=13% Similarity=0.264 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 401 LEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447 (651)
Q Consensus 401 LEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL 447 (651)
+..|+..|+.++....-.+..++.+++....+...++..+..||..+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455555555554444444444444444444444444444444443
No 38
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.86 E-value=43 Score=29.77 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
+..+++.+..++..|+..+..++.|+..|...|.+-+..-.........+++.|++|...
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666666655555555555555555555555555
No 39
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.73 E-value=43 Score=29.79 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 400 ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA 448 (651)
Q Consensus 400 eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~ 448 (651)
.+.+.+..++.+....+..+...+..|..-+.+-..+|.....+..+|.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE 57 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433
No 40
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.11 E-value=6.8 Score=36.67 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=11.3
Q ss_pred hhhhhhhhhHHHHHHHH----HHHHHHhH
Q 006305 469 GVAESKLSVVEAEMKTQ----LALANKSK 493 (651)
Q Consensus 469 ~~~e~kl~~lE~Ei~~e----L~la~~s~ 493 (651)
..+|+...-++.|+... +.-||+--
T Consensus 63 ~~aE~~~~~ie~ElE~LTasLFeEAN~MV 91 (135)
T 2e7s_A 63 TKAEEEADKLNKEVEDLTASLFDEANNLV 91 (135)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444421 55555543
No 41
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.20 E-value=52 Score=28.66 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006305 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA 464 (651)
Q Consensus 385 ~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~ 464 (651)
..+..+|..+...-..|...|+.++.++..+...|...+.+.+....+=..--...-.++.++-...+-...++.++...
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888888888888888877766665444333333444556666555555565555555443
No 42
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.87 E-value=20 Score=34.08 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=55.5
Q ss_pred cchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 385 ~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
......+..+......|+.++..++.+-.+-...+...++.+.+++.++-.++.++..||.+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888899999999999999999999999999999999999999999999999987
No 43
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=67.48 E-value=58 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=17.1
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKE 421 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e 421 (651)
.|+..+...+..+.+++++.+..+.+|+.....
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~ 46 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVT 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555444433
No 44
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.20 E-value=80 Score=28.56 Aligned_cols=76 Identities=25% Similarity=0.249 Sum_probs=45.3
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhh----hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAE----KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM 461 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaE----K~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el 461 (651)
.|+.....+...+..+..|++....| -..|+..+...+...+..+..+++.|+.-.+|.++-..+..|...++.++
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~ 86 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRL 86 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHH
Confidence 34445555555666666666665544 34466666666666666666777777776666666555555555444444
No 45
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=62.99 E-value=72 Score=27.23 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhH
Q 006305 419 LKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVV 478 (651)
Q Consensus 419 L~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~l 478 (651)
|..++..|+.......+.+.+.+.|-.+.+........++.....+...+++++++|.-+
T Consensus 23 l~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 23 MDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444433333334444445555555666665443
No 46
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.11 E-value=57 Score=28.20 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=47.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL 447 (651)
..|-+++.+.+|--+++.|+.|+.--|..|.-....|-..+-+|..-+..+.-||.+|
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5678899999999999999999998888887777777777777777777777777664
No 47
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=61.00 E-value=66 Score=29.19 Aligned_cols=93 Identities=23% Similarity=0.300 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHH
Q 006305 95 SGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVD 174 (651)
Q Consensus 95 ~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e 174 (651)
+-|+|-.++...|+.+|.....-+--+++- +...+|++...|....... ..- |.-|.+
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~--------------w~~k~E~~k~qV~~L~~~~-q~s-------E~~L~~ 63 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF--------------IKQSSEDSSHQISALVLRA-QAS-------EILLEE 63 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHH-------HHHHHH
Confidence 579999999999999998777766655543 5666666666665544332 111 444555
Q ss_pred HHHHHHHhhhHhh------hhhhHHHHHHHHHHHHhhhhhh
Q 006305 175 LQKKLQTAKSEAA------ASADRDLCSKLEAAEKQNSALK 209 (651)
Q Consensus 175 ~~~~L~~a~~e~~------a~~~~~L~~rLes~EKen~sLk 209 (651)
+++....++.... +..+..++.+|..+.+||-+|.
T Consensus 64 Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 64 LQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 5444444433221 1234567778888888888874
No 48
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=60.78 E-value=65 Score=27.52 Aligned_cols=31 Identities=26% Similarity=0.152 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q 006305 441 EELETQLAFANKSKQAVEVEMKAAIAARGVA 471 (651)
Q Consensus 441 ~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~ 471 (651)
.+|+.|+..+...+..+++++..|.....+.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555544443333
No 49
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=58.28 E-value=49 Score=28.68 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=42.5
Q ss_pred hhhHhhHhHHHHHHHhhcchhhH----HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhh
Q 006305 59 NDSVKTLTEKLSAALLNVSAKED----LVKQHAKVAEEAVSGW-EKAENELSTLKQQLKAASQKNSALENRVSHLDG 130 (651)
Q Consensus 59 ~~~vk~LneKLs~al~~~~~Kd~----lvkqhaKvaeEAv~GW-EKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ 130 (651)
...++.||++|++-+--+..=+. |..+-.-.-....+++ ..-++++..|+.+++.++..+..++-.+.+|-+
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999988765532110 1111000111122333 334888999999999998888887766655443
No 50
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=58.13 E-value=83 Score=27.20 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=58.0
Q ss_pred HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 006305 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA-ELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468 (651)
Q Consensus 390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~Ea-E~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~ 468 (651)
++..+..+.+..=+||.-||.+-..|+..+...+.+ .. ..+..+ +..+.+|+.+++.+...+..++.++..+.+..
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~-~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ-GK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888889999999988888888766543 22 233333 77899999999999999988887776655544
Q ss_pred hhh
Q 006305 469 GVA 471 (651)
Q Consensus 469 ~~~ 471 (651)
..+
T Consensus 87 ~~~ 89 (93)
T 3s4r_A 87 MRL 89 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 51
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.75 E-value=1e+02 Score=32.24 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhh
Q 006305 128 LDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSA 207 (651)
Q Consensus 128 LD~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~s 207 (651)
.+.||+....++... |.+. ++..|.......|+.+|.++++.+..+.+.+.. .+...+.-.+|++|+.+.
T Consensus 371 ~eeal~~~~~~i~~~-------l~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 440 (471)
T 3mq9_A 371 VDEALKDAQTRITAA-------RDGL--RAVMEARNVTHLLQQELTEAQKGFQDVEAQAAT-ANHTVMALMASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHHHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHhh--HHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhh-cchhHHHHHHHHHHHHHH
Confidence 466666666555432 2221 334466777788999999999999887766542 234445555677777664
No 52
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.75 E-value=1.4e+02 Score=28.46 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=13.9
Q ss_pred ccchHHHHHHHHHhHHhHHHHHHHHHhhh
Q 006305 384 ESSIKAELEVLIHRTAELEEELENMRAEK 412 (651)
Q Consensus 384 ~~sl~~Ele~~~~q~~eLEeKlEKleaEK 412 (651)
.++|..+|-.+...+.....++..++..+
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r 43 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYNQLK 43 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554444444444433
No 53
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.56 E-value=1.1e+02 Score=27.31 Aligned_cols=54 Identities=15% Similarity=0.369 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcH----HHHHHHHHHHHHHHhhHHHH
Q 006305 510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSE----ENIANFQKSKDELSKVKQEI 563 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~----E~~aKc~~LEeeL~R~k~~~ 563 (651)
+-.++..+++|+..+.+...+|+..|.+=..... .+-.+...||.+|.+.+.++
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4445555666666666666666666554333222 23344556677776666543
No 54
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=49.50 E-value=2.6e+02 Score=30.72 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 510 AESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
..+.+..++.-++.|..||..|+..+.
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777777764
No 55
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=48.60 E-value=1.6e+02 Score=26.78 Aligned_cols=42 Identities=12% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHH
Q 006305 520 EMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ 561 (651)
Q Consensus 520 E~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~ 561 (651)
.|..|...|.-....+..||+--+.+..+-..|+++|....+
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 477788888888888999999999999999999998887664
No 56
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=48.21 E-value=1.8e+02 Score=27.39 Aligned_cols=56 Identities=27% Similarity=0.361 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 505 ~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
-|.+.||.-|+.-..=+..|+.-|..|..|+++||.--+|..--+..|.=+-.-.+
T Consensus 98 RKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vk 153 (167)
T 4gkw_A 98 RKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLK 153 (167)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 45677888888888889999999999999999999988888887777765444443
No 57
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.65 E-value=1.1e+02 Score=27.61 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc----HHHHHHHHHHHHHHHhhHHH
Q 006305 512 SRLRAVEAEMETLRSKVISLEDEVEKERALS----EENIANFQKSKDELSKVKQE 562 (651)
Q Consensus 512 s~l~~~eaE~~~L~~Ki~~Le~EiekER~~s----~E~~aKc~~LEeeL~R~k~~ 562 (651)
.++..+++|+..+.+...+|+..|.+=.... ..+-.+...||.+|.+.+.+
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443322211 12333444566666665543
No 58
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=45.47 E-value=72 Score=28.82 Aligned_cols=20 Identities=40% Similarity=0.348 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006305 431 NQLKEAELKLEELETQLAFA 450 (651)
Q Consensus 431 ~~L~EaE~kl~ELQ~qL~~a 450 (651)
.-....+.|+.+|+.+|+.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444677777777776654
No 59
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.09 E-value=82 Score=29.46 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHH
Q 006305 513 RLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVA 592 (651)
Q Consensus 513 ~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~A 592 (651)
++..+..++......+..|..++..||..-..+......++.+|.-..- .+-.|++. +++.+..+-..- |+.....
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa--sLFeEAN~-MVa~ar~~~~~~-e~r~~~L 108 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA--SLFDEANN-LVADARMEKYAI-EILNKRL 108 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH--HHHHHHHH-HHHHTTHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHH-HHHHHHH
Confidence 4444444444555556667888999999999999999999999988773 45556654 344343332111 2233334
Q ss_pred hhhhHHHHHHHHHHHHhhhhcc
Q 006305 593 ASKFAECQKTIASLGRQLRSLV 614 (651)
Q Consensus 593 A~KLAECQkTIasLGrQLKSLa 614 (651)
-..|.|-.-.|.+|-.||+-|-
T Consensus 109 ~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 109 TEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4558888888888888888764
No 60
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=43.16 E-value=84 Score=24.46 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 006305 400 ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKE 435 (651)
Q Consensus 400 eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~E 435 (651)
++|+|+++|++=-.-|...|+..-.++..++..|+-
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKq 37 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQ 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999887753
No 61
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=41.82 E-value=1.9e+02 Score=25.71 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=33.8
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG 469 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~ 469 (651)
.+.+|+.++.+++ ..-.+.+.+-..+++..+..|..--..|..|+..++....++..+...+..++.++.
T Consensus 30 ~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~ 99 (107)
T 2no2_A 30 EKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERD 99 (107)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 223333444444555555555555555555555555555555555544444444433
No 62
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=41.51 E-value=26 Score=29.75 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Q 006305 192 RDLCSKLEAAEKQNSALKLELLSLVKELEL 221 (651)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kELeI 221 (651)
..+..+.+.++++|..|+.+|..|.+|+..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999999988888764
No 63
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=41.45 E-value=89 Score=26.81 Aligned_cols=16 Identities=44% Similarity=0.387 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 006305 435 EAELKLEELETQLAFA 450 (651)
Q Consensus 435 EaE~kl~ELQ~qL~~a 450 (651)
..+.||.+|+.+|+.+
T Consensus 56 ~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 56 ALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666665543
No 64
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.44 E-value=33 Score=26.38 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 508 EAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 508 ~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
..||.+.+.++.-+..|.++|++|+.|=.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35788888888888888888888887643
No 65
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=41.27 E-value=96 Score=34.49 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=17.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhccc
Q 006305 588 ELAVAASKFAECQKTIASLGRQLRSLVT 615 (651)
Q Consensus 588 ELA~AA~KLAECQkTIasLGrQLKSLa~ 615 (651)
|=-..|.|==-.|+-...|+.-|-++.+
T Consensus 505 eR~~~~ekn~~lq~qL~~L~~el~~~r~ 532 (575)
T 2i1j_A 505 DRRTLAERNERLHNQLKALKQDLARSCD 532 (575)
T ss_dssp GCCCHHHHCHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3344556666677777777777766653
No 66
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=41.23 E-value=79 Score=28.83 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006305 433 LKEAELKLEELETQLAFA 450 (651)
Q Consensus 433 L~EaE~kl~ELQ~qL~~a 450 (651)
....+.||.+|+.+|+.+
T Consensus 71 Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 71 AVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344666777777776554
No 67
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=40.30 E-value=1.2e+02 Score=25.56 Aligned_cols=54 Identities=20% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHH
Q 006305 499 EVKSAKSKKEAAESRLRAVEAE----METLRSKVISLEDEVEKERALSEENIANFQKS 552 (651)
Q Consensus 499 elk~~~~k~~~lEs~l~~~eaE----~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~L 552 (651)
+|.++...+.+||.++..++.- +..+..+|..|+.++.+=|.--+-....|++|
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~L 59 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDL 59 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 68
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=40.12 E-value=37 Score=37.74 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q 006305 544 ENIANFQKSKDELSKVKQE 562 (651)
Q Consensus 544 E~~aKc~~LEeeL~R~k~~ 562 (651)
++..|-+.|++||.-.+.+
T Consensus 508 ~~~ekn~~lq~qL~~L~~e 526 (575)
T 2i1j_A 508 TLAERNERLHNQLKALKQD 526 (575)
T ss_dssp CHHHHCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4566777777777766653
No 69
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=39.73 E-value=51 Score=24.57 Aligned_cols=33 Identities=9% Similarity=0.270 Sum_probs=25.5
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETS 429 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s 429 (651)
++-.||.|+|.|-.+|-+|+-...+.+.-+-.|
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 566789999999999998888877766655544
No 70
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.76 E-value=1.3e+02 Score=23.17 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=30.7
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
++..++..++.++..+....-.+...+..+..+...|..+-..+.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666555
No 71
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=38.17 E-value=1.6e+02 Score=23.87 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 513 RLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 513 ~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
.+..+..|+..|+..|.+|+.||+-
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667888999999999999988863
No 72
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.10 E-value=1.5e+02 Score=25.60 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 494 ~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
+...++|..+.+-.-+++++|+.++.....|...|..|+.+++.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555667777777777777777777777666654
No 73
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=37.39 E-value=2.2e+02 Score=25.22 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=12.6
Q ss_pred HHHhHHhHHHHHHHHHhhhhHHHhhHHHHH
Q 006305 394 LIHRTAELEEELENMRAEKSELEMDLKESQ 423 (651)
Q Consensus 394 ~~~q~~eLEeKlEKleaEK~ELEmaL~e~q 423 (651)
++.|+.+|++-+-.++++-+..+.-+.+.+
T Consensus 23 L~kQk~eL~~~l~~l~~e~~~R~~~i~el~ 52 (101)
T 1d7m_A 23 LIKQKDQLNSLLASLESEGAEREKRLRELE 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333333
No 74
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=36.87 E-value=1.1e+02 Score=27.27 Aligned_cols=16 Identities=44% Similarity=0.387 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 006305 435 EAELKLEELETQLAFA 450 (651)
Q Consensus 435 EaE~kl~ELQ~qL~~a 450 (651)
..+.||.+|+.+|+.+
T Consensus 56 ~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 56 ALETKLGELKRELADL 71 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666665543
No 75
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=36.37 E-value=1.2e+02 Score=27.07 Aligned_cols=50 Identities=24% Similarity=0.403 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHH
Q 006305 514 LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563 (651)
Q Consensus 514 l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~ 563 (651)
|...++++.+-..-|-.|.+-+.+|++.+.+-..+.++|+.+|-...+.+
T Consensus 34 l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~L 83 (99)
T 3ni0_A 34 LLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888999999999999999999999999999999988743
No 76
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=36.27 E-value=33 Score=29.74 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhhh
Q 006305 192 RDLCSKLEAAEKQNSALKLELLSLVKELE 220 (651)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kELe 220 (651)
..+..+.+.+++||..|+.+|..|.+|+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999999988776555443
No 77
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=36.19 E-value=53 Score=24.50 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=23.5
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLET 428 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~ 428 (651)
++-.||.|+|.|-.+|-+|+-...+.+.-+-.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 45678888888888888888877666554443
No 78
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.69 E-value=93 Score=33.09 Aligned_cols=53 Identities=17% Similarity=0.284 Sum_probs=38.7
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
++..|+++++.++.++.+|+..+...+..++....++...+...-.|.-++..
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888888777777777777777766666655443
No 79
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.45 E-value=96 Score=33.46 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=42.5
Q ss_pred cchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006305 76 VSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVS 155 (651)
Q Consensus 76 ~~~Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~ 155 (651)
|.-+|-|.|++..| ...+..|+..|+.+......+.+ |=.+++.|+.+ ++-+..-..+.+.
T Consensus 23 C~i~d~L~k~e~~V-----------~~~l~~LE~~l~elsn~ts~v~~----Lvk~iq~~~~~----~Q~~~~d~~e~~t 83 (409)
T 1m1j_C 23 CGIADFFNKYRLTT-----------DGELLEIEGLLQQATNSTGSIEY----LIQHIKTIYPS----EKQTLPQSIEQLT 83 (409)
T ss_dssp THHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHSCS----STTCCSSCHHHHH
T ss_pred ccHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccc----ccCCCCCchhhHH
Confidence 44456677777766 33466666667666666665554 55667777544 2223333344456
Q ss_pred HHhhhHhhhhHHHHHHH
Q 006305 156 KQNLEWESKKSELESKL 172 (651)
Q Consensus 156 kks~e~e~~~~elE~kl 172 (651)
++++........||..+
T Consensus 84 q~skkml~~~~~~e~~~ 100 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTI 100 (409)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66655443334444433
No 80
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=33.20 E-value=2.6e+02 Score=24.77 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHH
Q 006305 518 EAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ 561 (651)
Q Consensus 518 eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~ 561 (651)
-..|..|+..|.-....++.||+--+.+..+-..|.+++....+
T Consensus 39 ~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 39 METVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35677888888889999999999999999999999999887765
No 81
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.54 E-value=71 Score=25.71 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
...|+.++..++.+...|..+|..|+.|+..
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888754
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.84 E-value=4.7e+02 Score=27.38 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=24.9
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELK 439 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~k 439 (651)
++..++.+-..++.+|.+++-.+...++........+++..+.
T Consensus 354 ~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~ 396 (487)
T 3oja_A 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhch
Confidence 4444444444666666677777766666666555555554333
No 83
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.71 E-value=2.5e+02 Score=24.23 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305 507 KEAAESRLRAVEAEMETLRSKVISLE 532 (651)
Q Consensus 507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le 532 (651)
.+..|.+-..+..|+..|..++..|.
T Consensus 47 L~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 47 LREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555566666666555543
No 84
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.68 E-value=2.3e+02 Score=23.77 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 425 RLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 425 ~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
++..++.++..+...+..++.++..
T Consensus 9 ~f~~lq~~~~~l~~q~~~l~~~~~e 33 (107)
T 1fxk_A 9 QFQQLQQQAQAISVQKQTVEMQINE 33 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.37 E-value=4.7e+02 Score=27.40 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHH
Q 006305 518 EAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDEL 556 (651)
Q Consensus 518 eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL 556 (651)
..|...+...+..+...|.+=++-=.++-++-..|-+||
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 448 AEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 334444555555555555555555555555555554443
No 86
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.72 E-value=5.4e+02 Score=27.79 Aligned_cols=44 Identities=11% Similarity=0.207 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305 495 AAEEEVKSAKSK-KEAAESRLRAVEAEMETLRSKVISLEDEVEKER 539 (651)
Q Consensus 495 ~a~eelk~~~~k-~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER 539 (651)
..+..|.-++.+ ...+- +++.|+.-|+.+..||.-||..|+-=|
T Consensus 117 eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~ 161 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKI 161 (390)
T ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444433 22344 778888888888888888888885433
No 87
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.26 E-value=3.3e+02 Score=25.08 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305 513 RLRAVEAEMETLRSKVISLEDEVEKER 539 (651)
Q Consensus 513 ~l~~~eaE~~~L~~Ki~~Le~EiekER 539 (651)
++..++.||+.|..++.-..++++.=|
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555555444444333
No 88
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=29.57 E-value=1.3e+02 Score=25.53 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=36.4
Q ss_pred HhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 399 ~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
.++|+|+++|+.=-.-|+..|++.-.++..++..|+ +++..|..+
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLK---qRit~LE~~ 47 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLK---QRLTKVEKF 47 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 368999999999999999999999999999988765 444445444
No 89
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=28.94 E-value=1.3e+02 Score=26.69 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Q 006305 149 RIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELEL 221 (651)
Q Consensus 149 ki~dav~kks~e~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeI 221 (651)
.+..++..-..+.+....+|+..|..+.+++. +||.+.....-||.....|..||+.
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~----------------~LE~iqs~aK~LRnKA~~L~~eLe~ 89 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKEID----------------QLEKMQNNSKLLRNKAVQLESELEN 89 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45556666666677777777777777766654 5667777777788888888777764
No 90
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=28.82 E-value=3.3e+02 Score=24.61 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=52.7
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLS 476 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~ 476 (651)
+..+|..+...|..|...+...+..++. ++......||.++......+..+...++.
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~----------e~~~~~~~Lq~El~~lr~~~~~l~~~iRe------------- 60 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYA----------QSYKQVSVLEDDLSQTRAIKEQLHKYVRE------------- 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 4556666666666666655544433322 23333445666666666666555444444
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305 477 VVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (651)
Q Consensus 477 ~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie 536 (651)
|..+|.-.+- ..+..-+-|..++.-.+.-..+.-+||.||.
T Consensus 61 ---------LEq~NDDLER----------~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 61 ---------LEQANDDLER----------AKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp ---------HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHhchHHHH----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544332 1122333444555556666677777888876
No 91
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=28.49 E-value=2.7e+02 Score=23.53 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 006305 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA 436 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~Ea 436 (651)
.|++.+.++.+.|+..+-.++.- ..+.+...+..|......|..+
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~---~~~~l~~~q~~i~~lE~el~~~ 47 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDS---LARERDTSRRLLAEKEREMAEM 47 (86)
T ss_dssp ---------CTTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777666652 4455555555555444444333
No 92
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=28.39 E-value=3e+02 Score=24.70 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 399 ~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
.++|+|+.|-=---+-|..+=+-...+++..++.|.+.+..++++|+++..
T Consensus 5 ~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 5 AEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444222222233333334566666666666666666666666433
No 93
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.14 E-value=4.1e+02 Score=29.97 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 512 SRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 512 s~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
+++..|+.=|+.+..||.-||..|.-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666653
No 94
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.08 E-value=3e+02 Score=23.33 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhH
Q 006305 414 ELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSK 493 (651)
Q Consensus 414 ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~ 493 (651)
++...+-..-.++..++.++..+...+..++.+ -...
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~-------------------------------------------~~e~ 39 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLE-------------------------------------------LTEA 39 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------HHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------HHHH
Q ss_pred HHHHHHHHHHHhh-------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 494 QAAEEEVKSAKSK-------------------KEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 494 ~~a~eelk~~~~k-------------------~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
..+-++|..+... ...|+.+...++.++..|..++..++.++.+
T Consensus 40 ~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 40 KKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.98 E-value=6.5e+02 Score=27.18 Aligned_cols=93 Identities=13% Similarity=0.213 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH
Q 006305 102 NELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQT 181 (651)
Q Consensus 102 ~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e~~~~L~~ 181 (651)
.-+..|++.|+...+.....-.=+.. +++-|++- ..|-+....++..-+.+ ||.+|..++..+.
T Consensus 67 ~rIe~L~~~L~~~s~s~~~~~~y~~~----~~~~lk~~----~~q~~dndn~~~e~s~e-------Le~~i~~lk~~V~- 130 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNSKDSNTLTKN----IVELMRGD----FAKANNNDNTFKQINED-------LRSRIEILRRKVI- 130 (390)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHH----HHhhccchHHHHHHHHH-------HHHHHHHHHHHHH-
Confidence 34778888888877766554333322 33333322 22223333344444433 4555555544432
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Q 006305 182 AKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELEL 221 (651)
Q Consensus 182 a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeI 221 (651)
..+. +|..++.-+..++.+++-|...++|
T Consensus 131 ----------~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 131 ----------EQVQ-RINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred ----------HHhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 4444555555555566555555443
No 96
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.60 E-value=3.6e+02 Score=24.10 Aligned_cols=61 Identities=33% Similarity=0.334 Sum_probs=39.5
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
..+.|+-.+..++-.|+.+++.+.+-+.-|+..|.+....+.. ++..+...+..|..+|..
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~ 95 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM---QLAQIQEMIGSVEEQLAQ 95 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3456888888889999999999999999999999888776643 333444445555555433
No 97
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=25.58 E-value=1.1e+02 Score=26.67 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHH
Q 006305 499 EVKSAKSKKEAAESRLRAVEA----EMETLRSKVISLEDEVEK 537 (651)
Q Consensus 499 elk~~~~k~~~lEs~l~~~ea----E~~~L~~Ki~~Le~Eiek 537 (651)
+|..+.....+||.++..++. ++..+...|..|+.++.+
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~ 55 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAE 55 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445566666666655 444455555555555544
No 98
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.20 E-value=58 Score=25.69 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhh
Q 006305 192 RDLCSKLEAAEKQNSALKLELLSLVKEL 219 (651)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kEL 219 (651)
.+|..++..++.+|..|+.++..++.++
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888899999999999999988765
No 99
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.09 E-value=3.1e+02 Score=23.04 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=12.8
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhh
Q 006305 389 AELEVLIHRTAELEEELENMRAEKS 413 (651)
Q Consensus 389 ~Ele~~~~q~~eLEeKlEKleaEK~ 413 (651)
-||+.+-.++..||.++..|++...
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555544443
No 100
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.06 E-value=3.7e+02 Score=23.96 Aligned_cols=61 Identities=28% Similarity=0.391 Sum_probs=45.7
Q ss_pred chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (651)
Q Consensus 386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ 449 (651)
..+.|+-.+...+-.|+-+++-+++-+.-|+..|.+....++. ++..+...+..|..+|..
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~ 93 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEEALQK 93 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHH
Confidence 4567999999999999999999999999999999988877653 344445555555555443
No 101
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.60 E-value=3.8e+02 Score=24.02 Aligned_cols=62 Identities=13% Similarity=0.253 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA 448 (651)
Q Consensus 387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~ 448 (651)
|--|--++.=+|.-|..++|.++..-..+...+.+....++..+.........+..|+.+|.
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566669999999999999999999999998888899888888888888888888854
No 102
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=24.33 E-value=75 Score=22.80 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhh
Q 006305 193 DLCSKLEAAEKQNSALKLELLSLV 216 (651)
Q Consensus 193 ~L~~rLes~EKen~sLkyE~~~l~ 216 (651)
.|.+.+..+.||++.||+|+-.+.
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888876653
No 103
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.66 E-value=1.5e+02 Score=24.67 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Q 006305 169 ESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELEL 221 (651)
Q Consensus 169 E~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeI 221 (651)
+..|.+|..++. .|....+.+..||..|+..+..|..||.+
T Consensus 28 ~~~i~~LE~~v~------------~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 28 EDHLKALETQVV------------TLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 104
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.51 E-value=4.4e+02 Score=24.26 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHH
Q 006305 166 SELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIK 245 (651)
Q Consensus 166 ~elE~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvK 245 (651)
-=|+.+|...+.-|..+.+.+++= +...+.=.++++++.+.-.-.+.-|+-|+..-|.
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTC-NqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq--------------------- 85 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATA-NHTVMALMASLDAEKAQGQKKVEELEGEITTLNH--------------------- 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 346777887777777776655422 2333333345555555433344445555544433
Q ss_pred HHHHHHHHHHHHHHHh
Q 006305 246 KLAKVEAECLRLKAVV 261 (651)
Q Consensus 246 KiakLEaECqRLr~l~ 261 (651)
|+-+.++|..|||.-.
T Consensus 86 ~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 86 KLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4566777777777644
No 105
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.83 E-value=78 Score=25.15 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=28.1
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLK 434 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~ 434 (651)
.+.+|+.+++.|+.+...|...+...+.++...+..|.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999998888888887777776665543
No 106
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=22.72 E-value=4.4e+02 Score=24.06 Aligned_cols=30 Identities=23% Similarity=0.073 Sum_probs=11.9
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHHHh
Q 006305 388 KAELEVLIHRTAELEEELENMRAEKSELEM 417 (651)
Q Consensus 388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEm 417 (651)
+.+...+....-.+...+.++...+.+|+.
T Consensus 28 ~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~ 57 (155)
T 2oto_A 28 RHENKDLKARLENAMEVAGRDFKRAEELEK 57 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334344444444443333333333333433
No 107
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.44 E-value=2.2e+02 Score=23.95 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHhHHhHHHHHHHHHhhhhHHHhhHHH
Q 006305 395 IHRTAELEEELENMRAEKSELEMDLKE 421 (651)
Q Consensus 395 ~~q~~eLEeKlEKleaEK~ELEmaL~e 421 (651)
+..+..|+.++++|+.+...|+..|+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 446777888888888888888877754
No 108
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.05 E-value=3.1e+02 Score=24.90 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305 510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (651)
Q Consensus 510 lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k 560 (651)
+|.=....+.-+..|...|..|+.++..=|..-+.+..-|..|..++....
T Consensus 31 le~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 31 LENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456677778889999999999999999999999999999998888654
No 109
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.89 E-value=1.3e+02 Score=22.02 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=21.0
Q ss_pred HHhHHHHHHHHHhhhhHHHhhHHHHHH
Q 006305 398 TAELEEELENMRAEKSELEMDLKESQR 424 (651)
Q Consensus 398 ~~eLEeKlEKleaEK~ELEmaL~e~q~ 424 (651)
+-.||.|+|.|=.+|.+|+-.+...+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556888999988888888887766543
No 110
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.71 E-value=3.9e+02 Score=22.96 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHH
Q 006305 514 LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQK-------SKDELSKVKQEIELQHEVKLQ 572 (651)
Q Consensus 514 l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~-------LEeeL~R~k~~~~~~~e~~~~ 572 (651)
+..+++-|..+...|.+|+.||+.-|.-.......-.. |..+..+.+. |...|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~------E~~~w 67 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE------QQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------HHHHH
No 111
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.20 E-value=5.4e+02 Score=24.06 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=58.9
Q ss_pred hHHHHHHhhcCCCCCCCCccccCCCCCCCCCccccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHH
Q 006305 351 DFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQ 430 (651)
Q Consensus 351 DFlEMEkLA~l~~~~~~~~~~~~~~~~d~~~~~~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~ 430 (651)
|-.-++|+|.||..-...+.... +.|. .....+..+++.+ ...|.+-...|++|..+...-..-..+.+..-+
T Consensus 41 Da~vrq~Ia~LP~eVsd~s~l~k--lkDk--~~~e~l~~~veeA---~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~ 113 (152)
T 4fla_A 41 DATVRQKIASLPQEVQDVSLLEK--ITDK--EAAERLSKTVDEA---CLLLAEYNGRLAAELEDRRQLARMLVEYTQNQK 113 (152)
T ss_dssp HHHHHHHHHTSCGGGTCGGGGGG--CCSH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCccccCHHHHHH--cccH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667999999977665554333 1111 1121222233333 334455556777777776666555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q 006305 431 NQLKEAELKLEELETQLAFANKSKQ 455 (651)
Q Consensus 431 ~~L~EaE~kl~ELQ~qL~~aneSk~ 455 (651)
.++.+++..+.+-+..++-++.-+.
T Consensus 114 ~~l~e~e~~leeyK~Kl~rv~~vkk 138 (152)
T 4fla_A 114 DVLSEKEKKLEEYKQKLARVTQVRK 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888766665553
No 112
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.20 E-value=5.5e+02 Score=25.18 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhh
Q 006305 104 LSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAK 183 (651)
Q Consensus 104 ~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e~~~~L~~a~ 183 (651)
+.++++++.....++-.++.....|-.=|.+|+..=-....+==+|..-++..| -.||.+++.+|....
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeK-----------K~KIR~lq~~Ll~~~ 202 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEK-----------KTKIRSLHNKLLNAA 202 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHH
Q ss_pred hHhh
Q 006305 184 SEAA 187 (651)
Q Consensus 184 ~e~~ 187 (651)
.+..
T Consensus 203 ~~~~ 206 (213)
T 1ik9_A 203 QERE 206 (213)
T ss_dssp HHHH
T ss_pred HHhh
Done!