Query 006305
Match_columns 651
No_of_seqs 105 out of 117
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 21:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006305.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006305hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efla1 a.238.1.4 (A:1-288) Fo 37.0 1.3E+02 0.0093 26.2 16.8 93 401-493 109-201 (288)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 28.9 1.3E+02 0.0095 23.9 11.1 15 510-524 84-98 (107)
3 d1vp7a_ a.7.13.1 (A:) Exonucle 28.0 81 0.0059 24.1 6.8 50 397-446 11-63 (68)
4 d2pv4a1 a.286.1.1 (A:1-144) Un 25.1 14 0.001 32.6 1.9 18 128-145 114-131 (144)
5 d1ufza_ a.5.9.1 (A:) HBS1-like 17.2 33 0.0024 27.8 2.4 41 123-163 24-67 (83)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 16.7 2.5E+02 0.018 22.5 11.3 91 418-537 2-127 (133)
7 d1ivsa1 a.2.7.3 (A:797-862) Va 14.1 1.9E+02 0.014 21.1 6.1 39 575-614 28-66 (66)
8 d2f23a1 a.2.1.1 (A:3-77) GreA 11.9 3E+02 0.022 21.0 7.8 52 399-450 11-70 (75)
9 d1lrza1 a.2.7.4 (A:245-309) Me 11.1 3E+02 0.022 20.6 8.2 51 398-448 5-61 (65)
10 d1grja1 a.2.1.1 (A:2-79) GreA 10.8 3.4E+02 0.024 20.9 7.7 54 398-451 10-72 (78)
No 1
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.97 E-value=1.3e+02 Score=26.17 Aligned_cols=93 Identities=10% Similarity=0.140 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 006305 401 LEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEA 480 (651)
Q Consensus 401 LEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~ 480 (651)
.+....++..+-..+...+......++.++..+..+...++.++.++..++.+......+..-+......+..++.-++.
T Consensus 109 ~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~~~~~~~~a~~ 188 (288)
T d2efla1 109 LKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKA 188 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555554444433322222333333333334444444444
Q ss_pred HHHHHHHHHHHhH
Q 006305 481 EMKTQLALANKSK 493 (651)
Q Consensus 481 Ei~~eL~la~~s~ 493 (651)
+....+..+|...
T Consensus 189 ~Y~~~v~~~n~~~ 201 (288)
T d2efla1 189 DYSSILQKFNHEQ 201 (288)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.94 E-value=1.3e+02 Score=23.86 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 006305 510 AESRLRAVEAEMETL 524 (651)
Q Consensus 510 lEs~l~~~eaE~~~L 524 (651)
++.++..++.++..+
T Consensus 84 l~~q~~~l~~~l~~~ 98 (107)
T d1fxka_ 84 IERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 3
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=27.99 E-value=81 Score=24.07 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=38.9
Q ss_pred hHHhHHHHHHHHHhhhhHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 006305 397 RTAELEEELENMRAEKSELEMDLKESQ---RRLETSQNQLKEAELKLEELETQ 446 (651)
Q Consensus 397 q~~eLEeKlEKleaEK~ELEmaL~e~q---~~Le~s~~~L~EaE~kl~ELQ~q 446 (651)
-+..||+-+.+|++.-..|+-+|..-+ .=+..|+..|..+++++..|...
T Consensus 11 ~l~~LE~IV~~LE~g~l~Leesl~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~ 63 (68)
T d1vp7a_ 11 ALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGD 63 (68)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 467888899999999888998887544 44566777788888888887665
No 4
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=25.06 E-value=14 Score=32.65 Aligned_cols=18 Identities=44% Similarity=0.756 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHhhHH
Q 006305 128 LDGALKECVRQLRQAREE 145 (651)
Q Consensus 128 LD~ALKECmrQLr~~rEE 145 (651)
+|..||+|++||..+|-+
T Consensus 114 ~~~~lKd~~KqLKKAR~D 131 (144)
T d2pv4a1 114 AEAALKESVKKLKKARTD 131 (144)
T ss_dssp HHTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 689999999999988853
No 5
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.18 E-value=33 Score=27.78 Aligned_cols=41 Identities=20% Similarity=0.484 Sum_probs=30.4
Q ss_pred hhhcchhhH-HHHHHHHHHHhhHH--HHHHHHHHHHHHhhhHhh
Q 006305 123 NRVSHLDGA-LKECVRQLRQAREE--QEQRIQETVSKQNLEWES 163 (651)
Q Consensus 123 drvshLD~A-LKECmrQLr~~rEE--qEqki~dav~kks~e~e~ 163 (651)
..++.+|.| |-.||.|+|.+==+ -++.|.+||++---.+++
T Consensus 24 ~~Ls~~d~aRL~SCldqmR~VvGDsvpe~~lv~avlk~dydvek 67 (83)
T d1ufza_ 24 HQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQK 67 (83)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHccCCHHH
Confidence 446778888 99999999976544 577888888876544433
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.71 E-value=2.5e+02 Score=22.48 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhH----
Q 006305 418 DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSK---- 493 (651)
Q Consensus 418 aL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~---- 493 (651)
.|.+...+++..+.++....+.+..|+..++.....+.. |....+..
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~-----------------------------L~~l~~~~~~e~ 52 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKT-----------------------------LSDIQGKDGSET 52 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHTTCTTCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHhhcCCCCeE
Q ss_pred -------------------------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305 494 -------------------------------QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (651)
Q Consensus 494 -------------------------------~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek 537 (651)
.-..+-++-.+.+.+.++.++..+..++..+..++..++.++++
T Consensus 53 lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~ 127 (133)
T d1fxkc_ 53 LVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp EEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCceEEEEEecCCCceEEEecCCeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 7
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=14.13 E-value=1.9e+02 Score=21.08 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=27.8
Q ss_pred hcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhhhhcc
Q 006305 575 AGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLV 614 (651)
Q Consensus 575 ~~~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQLKSLa 614 (651)
.+.+.--|...+ =+...-.||++=+..|..|..+|..|+
T Consensus 28 ~N~~F~~kAP~~-Vv~~~k~kl~~~~~~~~~l~~~l~~Lg 66 (66)
T d1ivsa1 28 ASPGFREKAPKE-VVEAEEARLKENLEQAERIREALSQIG 66 (66)
T ss_dssp TSTTHHHHSCTT-HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CChHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444444444444 344456899999999999999999885
No 8
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=11.90 E-value=3e+02 Score=21.03 Aligned_cols=52 Identities=27% Similarity=0.309 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHhhhhHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 399 AELEEELENMRAEKSELEMDLKESQ--------RRLETSQNQLKEAELKLEELETQLAFA 450 (651)
Q Consensus 399 ~eLEeKlEKleaEK~ELEmaL~e~q--------~~Le~s~~~L~EaE~kl~ELQ~qL~~a 450 (651)
..|++.|+.+..+..+.-.++..++ ..|...+.+....+.++.+|+..|..|
T Consensus 11 ~kL~~EL~~l~~~r~ei~~~I~eAr~~GDl~ENaeY~aAke~q~~~e~rI~eLe~~L~~a 70 (75)
T d2f23a1 11 ERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRA 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455566666666666666666665 678888888888888888888887655
No 9
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=11.09 E-value=3e+02 Score=20.59 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhhhhHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305 398 TAELEEELENMRAEKSELEMDLKE------SQRRLETSQNQLKEAELKLEELETQLA 448 (651)
Q Consensus 398 ~~eLEeKlEKleaEK~ELEmaL~e------~q~~Le~s~~~L~EaE~kl~ELQ~qL~ 448 (651)
+..|+.+..+|+.....++.+|.+ .++++.....||...+.++.|.+.-..
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~li~ 61 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQE 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.78 E-value=3.4e+02 Score=20.88 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhhhh-HHHhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006305 398 TAELEEELENMRAEKS-ELEMDLKESQ--------RRLETSQNQLKEAELKLEELETQLAFAN 451 (651)
Q Consensus 398 ~~eLEeKlEKleaEK~-ELEmaL~e~q--------~~Le~s~~~L~EaE~kl~ELQ~qL~~an 451 (651)
...|++.|+.|...++ +.-.++..++ ..|...+......+.++.+|+..|..|.
T Consensus 10 ~~~L~~EL~~L~~~~rpei~~~I~~Ar~~GDlsENaeY~aAKe~q~~~e~RI~eLe~~L~~a~ 72 (78)
T d1grja1 10 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 72 (78)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhCce
Done!