BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006309
(651 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1AZA5|TM245_MOUSE Transmembrane protein 245 OS=Mus musculus GN=Tmem245 PE=1 SV=1
Length = 876
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 9/185 (4%)
Query: 452 SGAAEVFNFVSQLMIFLWVLYYLITS--ESGGVTEQVMGMLPISKPARIRCV--EVIDNA 507
SG A + NFV L+IFL L+YL++S E + V+ + P+S+P + + ++ A
Sbjct: 645 SGTA-LLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEA 703
Query: 508 ISGVLLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFISALFPIFPFWFATIPAAVQL 567
I GV A++++A F G TWL F I+ +++ + LA I P ++A +PA + L
Sbjct: 704 IRGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDL 763
Query: 568 LL-ESRYIVAISLSVIHLVLLDYGTCEIQEDIPGYS-PYLTGLSIIGGMTLFPSALELLV 625
L + AI L V HL+ + I DI G PYLTGL++ GG LE +
Sbjct: 764 WLTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAI 821
Query: 626 IGDLI 630
IG ++
Sbjct: 822 IGPIL 826
>sp|Q9H330|TM245_HUMAN Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2
Length = 911
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 9/185 (4%)
Query: 452 SGAAEVFNFVSQLMIFLWVLYYLITS--ESGGVTEQVMGMLPISKPARIRCV--EVIDNA 507
SG A + NFV L+IFL L+YL++S E + V+ + P+S+P + + ++ A
Sbjct: 648 SGTA-LLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEA 706
Query: 508 ISGVLLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFISALFPIFPFWFATIPAAVQL 567
I GV A++++A F G TWL F I+ +++ + LA I P ++A +PA + L
Sbjct: 707 IRGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDL 766
Query: 568 LL-ESRYIVAISLSVIHLVLLDYGTCEIQEDIPGYS-PYLTGLSIIGGMTLFPSALELLV 625
L + AI L + HL+ + I DI G PYLTGL++ GG LE +
Sbjct: 767 WLTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAI 824
Query: 626 IGDLI 630
IG ++
Sbjct: 825 IGPIL 829
>sp|D3ZXD8|TM245_RAT Transmembrane protein 245 OS=Rattus norvegicus GN=Tmem245 PE=2 SV=1
Length = 876
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 9/185 (4%)
Query: 452 SGAAEVFNFVSQLMIFLWVLYYLITS--ESGGVTEQVMGMLPISKPARIRCV--EVIDNA 507
SG A + NFV L+IFL L+YL++S E + V+ + P+S+P + + ++ A
Sbjct: 645 SGTA-LLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEA 703
Query: 508 ISGVLLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFISALFPIFPFWFATIPAAVQL 567
I GV A++++A F G TWL F I+ +++ + LA I P ++A +PA + L
Sbjct: 704 IRGVFDASLKMAGFYGLYTWLTHTVFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDL 763
Query: 568 LL-ESRYIVAISLSVIHLVLLDYGTCEIQEDIPGYS-PYLTGLSIIGGMTLFPSALELLV 625
L + A+ L V HL+ + I DI G PYLTGL++ GG LE +
Sbjct: 764 WLTQGLGCKAVLLLVFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAI 821
Query: 626 IGDLI 630
IG ++
Sbjct: 822 IGPIL 826
>sp|E1BD52|TM245_BOVIN Transmembrane protein 245 OS=Bos taurus GN=TMEM245 PE=3 SV=1
Length = 868
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 17/233 (7%)
Query: 412 QKAKEFAYQGINVSQRVFAGSASVLGSSAKLMLST-----GYLIISGAAEVFNFVSQLMI 466
Q F ++ I + V+ + L+ ST L SG A + NFV L+I
Sbjct: 603 QDIASFVHENIETFLSILESLWVVMSRNVSLLFSTITTLLTILFYSGTA-LLNFVLSLII 661
Query: 467 FLWVLYYLITS--ESGGVTEQVMGMLPISKPARIRCV--EVIDNAIS---GVLLATVEIA 519
FL L+YL++S E + V+ + P+S+P + + ++ AI GV A++++A
Sbjct: 662 FLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRHSRGVFDASLKMA 721
Query: 520 FFQGCLTWLLFRFFKIHFLYMSTTLAFISALFPIFPFWFATIPAAVQLLL-ESRYIVAIS 578
F G TWL F I+ +++ + LA I P ++A +PA + L L + AI
Sbjct: 722 GFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAIL 781
Query: 579 LSVIHLVLLDYGTCEIQEDIPGYS-PYLTGLSIIGGMTLFPSALELLVIGDLI 630
L V HL+ + I DI G PYLTGL++ GG + LE +IG ++
Sbjct: 782 LLVFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGA--YYLGLEGAIIGPIL 832
>sp|O28474|Y1800_ARCFU UPF0118 membrane protein AF_1800 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_1800 PE=3 SV=1
Length = 340
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 499 RCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFISALFPIFPFWF 558
R VE ID + +A G ++ F +F + F + + L F++AL PIF W
Sbjct: 181 RFVEEIDVTFESLWFGNFVVAILIGLVSLPFFLYFNVPFAPLLSGLMFLAALIPIFAEWM 240
Query: 559 ATIPAAVQLLL 569
+P ++ LLL
Sbjct: 241 IILPVSLYLLL 251
>sp|B1LH32|TRPA_ECOSM Tryptophan synthase alpha chain OS=Escherichia coli (strain SMS-3-5
/ SECEC) GN=trpA PE=3 SV=1
Length = 268
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKAGVDSVLVADVPVEES 136
>sp|A6WPX2|TRPA_SHEB8 Tryptophan synthase alpha chain OS=Shewanella baltica (strain
OS185) GN=trpA PE=3 SV=1
Length = 273
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LGF FS D + ++ RS + G TP + + ++ + IGL++ +VF
Sbjct: 55 LELGFPFSDPLADGPVIQGANLRSLAAGTTPTACFELLAQVRAKYPELPIGLLLYANLVF 114
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F K G D+V+ VEES
Sbjct: 115 ANGIDAFYAKAQQAGVDSVLIADVPVEES 143
>sp|A3D631|TRPA_SHEB5 Tryptophan synthase alpha chain OS=Shewanella baltica (strain OS155
/ ATCC BAA-1091) GN=trpA PE=3 SV=1
Length = 273
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LGF FS D + ++ RS + G TP + + ++ + IGL++ +VF
Sbjct: 55 LELGFPFSDPLADGPVIQGANLRSLAAGTTPTACFELLAQVRAKYPELPIGLLLYANLVF 114
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F K G D+V+ VEES
Sbjct: 115 ANGIDAFYAKAQQAGVDSVLIADVPVEES 143
>sp|A6T7W5|TRPA_KLEP7 Tryptophan synthase alpha chain OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=trpA PE=3
SV=1
Length = 269
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%)
Query: 204 GSLVILALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVG 263
G L LG FS D ++ R+ + G TP + +++ + IGL++
Sbjct: 43 GGADALELGIPFSDPLADGPTIQGAALRAFAAGVTPAQCFEMLAAIRQKHPTIPIGLLMY 102
Query: 264 MMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEES 297
+VF GI F + G D+V+ VEES
Sbjct: 103 ANLVFSPGIDAFYAQCARVGVDSVLVADVPVEES 136
>sp|B5XT03|TRPA_KLEP3 Tryptophan synthase alpha chain OS=Klebsiella pneumoniae (strain
342) GN=trpA PE=3 SV=1
Length = 269
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%)
Query: 204 GSLVILALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVG 263
G L LG FS D ++ R+ + G TP + +++ + IGL++
Sbjct: 43 GGADALELGIPFSDPLADGPTIQGAALRAFAAGVTPAQCFEMLAAIRQKHPTIPIGLLMY 102
Query: 264 MMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEES 297
+VF GI F + G D+V+ VEES
Sbjct: 103 ANLVFSPGIDAFYAQCARVGVDSVLVADVPVEES 136
>sp|P00930|TRPA_ENTAE Tryptophan synthase alpha chain OS=Enterobacter aerogenes GN=trpA
PE=1 SV=2
Length = 269
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%)
Query: 204 GSLVILALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVG 263
G L LG FS D ++ R+ + G TP + +++ + IGL++
Sbjct: 43 GGADALELGIPFSDPLADGPTIQGAALRAFAAGVTPAQCFEMLAAIRQKHPTIPIGLLMY 102
Query: 264 MMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEES 297
+VF GI F + G D+V+ VEES
Sbjct: 103 ANLVFSPGIDAFYAQCARVGVDSVLVADVPVEES 136
>sp|A9KTR8|TRPA_SHEB9 Tryptophan synthase alpha chain OS=Shewanella baltica (strain
OS195) GN=trpA PE=3 SV=1
Length = 273
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LGF FS D + ++ RS + G TP + + ++ + IGL++ +VF
Sbjct: 55 LELGFPFSDPLADGPVIQGANLRSLAAGTTPTACFELLAQVRAKYPELPIGLLLYANLVF 114
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F K G D+V+ VEES
Sbjct: 115 ANGIDAFYAKAQQAGVDSVLIADVPVEES 143
>sp|Q0T5D6|TRPA_SHIF8 Tryptophan synthase alpha chain OS=Shigella flexneri serotype 5b
(strain 8401) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|B2U0F1|TRPA_SHIB3 Tryptophan synthase alpha chain OS=Shigella boydii serotype 18
(strain CDC 3083-94 / BS512) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|Q31ZV3|TRPA_SHIBS Tryptophan synthase alpha chain OS=Shigella boydii serotype 4
(strain Sb227) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|P0A878|TRPA_SHIFL Tryptophan synthase alpha chain OS=Shigella flexneri GN=trpA PE=3
SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|P0A877|TRPA_ECOLI Tryptophan synthase alpha chain OS=Escherichia coli (strain K12)
GN=trpA PE=1 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|B1ITJ5|TRPA_ECOLC Tryptophan synthase alpha chain OS=Escherichia coli (strain ATCC
8739 / DSM 1576 / Crooks) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|A7ZZJ6|TRPA_ECOHS Tryptophan synthase alpha chain OS=Escherichia coli O9:H4 (strain
HS) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|B1XBK9|TRPA_ECODH Tryptophan synthase alpha chain OS=Escherichia coli (strain K12 /
DH10B) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|C4ZTV3|TRPA_ECOBW Tryptophan synthase alpha chain OS=Escherichia coli (strain K12 /
MC4100 / BW2952) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|B7L492|TRPA_ECO55 Tryptophan synthase alpha chain OS=Escherichia coli (strain 55989 /
EAEC) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|Q1RCA7|TRPA_ECOUT Tryptophan synthase alpha chain OS=Escherichia coli (strain UTI89 /
UPEC) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEVLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAECEKVGVDSVLVADVPVEES 136
>sp|B7N473|TRPA_ECOLU Tryptophan synthase alpha chain OS=Escherichia coli O17:K52:H18
(strain UMN026 / ExPEC) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 SKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|A1AAN0|TRPA_ECOK1 Tryptophan synthase alpha chain OS=Escherichia coli O1:K1 / APEC
GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEVLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAECEKVGVDSVLVADVPVEES 136
>sp|B7ML76|TRPA_ECO45 Tryptophan synthase alpha chain OS=Escherichia coli O45:K1 (strain
S88 / ExPEC) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEVLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAECEKVGVDSVLVADVPVEES 136
>sp|B7MU99|TRPA_ECO81 Tryptophan synthase alpha chain OS=Escherichia coli O81 (strain
ED1a) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEVLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAECEKVGVDSVLVADVPVEES 136
>sp|B7UR66|TRPA_ECO27 Tryptophan synthase alpha chain OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEVLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAECEKVGVDSVLVADVPVEES 136
>sp|B5YZP0|TRPA_ECO5E Tryptophan synthase alpha chain OS=Escherichia coli O157:H7 (strain
EC4115 / EHEC) GN=trpA PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|Q8X7B5|TRPA_ECO57 Tryptophan synthase alpha chain OS=Escherichia coli O157:H7 GN=trpA
PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|Q8FHW0|TRPA_ECOL6 Tryptophan synthase alpha chain OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=trpA PE=3 SV=1
Length = 268
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAECEKVGVDSVLVADVPVEES 136
>sp|A8AG60|TRPA_CITK8 Tryptophan synthase alpha chain OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=trpA PE=3 SV=1
Length = 268
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQEATLRAFAAGVTPTQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 SKGIDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|O94823|AT10B_HUMAN Probable phospholipid-transporting ATPase VB OS=Homo sapiens
GN=ATP10B PE=2 SV=2
Length = 1461
Score = 34.3 bits (77), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 10/138 (7%)
Query: 168 LKNNGPRHSRSGFSKLVRWLVSFAV-FVIAYETIGAVGSLVILALGFLFSTTNVDSTMSA 226
L N+GPR+ RS + + + F + +I IGAVG + F A
Sbjct: 297 LNNSGPRYKRSKIERRMNIDIFFCIGILILMCLIGAVGHSI---WNGTFEEHPPFDVPDA 353
Query: 227 VSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVFLAGIIFFSYKIGVEGKDA 286
SF + G F + T IL L+ ++ I L V + +V L + F S + + ++
Sbjct: 354 NGSFLPSALG--GFYMFLTMIIL--LQVLIPISLYVSIELVKLGQVFFLSNDLDLYDEET 409
Query: 287 VISIKSHVEESNYAERLG 304
+SI+ N AE LG
Sbjct: 410 DLSIQCRA--LNIAEDLG 425
>sp|B6I9X4|TRPA_ECOSE Tryptophan synthase alpha chain OS=Escherichia coli (strain SE11)
GN=trpA PE=3 SV=1
Length = 268
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ +EES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPIEES 136
>sp|B7LY16|TRPA_ECO8A Tryptophan synthase alpha chain OS=Escherichia coli O8 (strain
IAI1) GN=trpA PE=3 SV=1
Length = 268
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ +EES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPIEES 136
>sp|A7ZL78|TRPA_ECO24 Tryptophan synthase alpha chain OS=Escherichia coli O139:H28
(strain E24377A / ETEC) GN=trpA PE=3 SV=1
Length = 268
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ +EES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPIEES 136
>sp|Q3Z108|TRPA_SHISS Tryptophan synthase alpha chain OS=Shigella sonnei (strain Ss046)
GN=trpA PE=3 SV=1
Length = 268
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ +EES
Sbjct: 108 NKGIDEFYAQCEKVGVDSVLVADVPIEES 136
>sp|B7NVN0|TRPA_ECO7I Tryptophan synthase alpha chain OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=trpA PE=3 SV=1
Length = 268
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
G+ F + G D+V+ VEES
Sbjct: 108 NKGVDEFYAQCEKVGVDSVLVADVPVEES 136
>sp|Q8ECU9|TRPA_SHEON Tryptophan synthase alpha chain OS=Shewanella oneidensis (strain
MR-1) GN=trpA PE=3 SV=1
Length = 278
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LGF FS D + ++ R+ + G TP + + ++ + IGL++ +VF
Sbjct: 60 LELGFPFSDPLADGPVIQGANLRALAAGTTPTACFELLAKIRAKYPELPIGLLLYANLVF 119
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F K G D+V+ VEE+
Sbjct: 120 ANGIDAFYAKAQQAGVDSVLIADVPVEEA 148
>sp|Q0TIB0|TRPA_ECOL5 Tryptophan synthase alpha chain OS=Escherichia coli O6:K15:H31
(strain 536 / UPEC) GN=trpA PE=3 SV=1
Length = 268
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + ++++ + IGL++ +VF
Sbjct: 48 LELGTPFSDPLADGPTIQNATLRAFAAGVTPAQCFEVLALIRQKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NKGIDEFYAECEKVGVDSVLVADVPVEES 136
>sp|B4TX39|TRPA_SALSV Tryptophan synthase alpha chain OS=Salmonella schwarzengrund
(strain CVM19633) GN=trpA PE=3 SV=1
Length = 268
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>sp|A1S7I3|TRPA_SHEAM Tryptophan synthase alpha chain OS=Shewanella amazonensis (strain
ATCC BAA-1098 / SB2B) GN=trpA PE=3 SV=1
Length = 266
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%)
Query: 204 GSLVILALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVG 263
G L LGF FS D + ++ R+ + G TP + + ++ + IGL++
Sbjct: 43 GGADCLELGFPFSDPLADGPVIQGANIRALAAGTTPDTCFKMIEQIRAKYPELPIGLLLY 102
Query: 264 MMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEES 297
+VF GI F + G D+V+ EES
Sbjct: 103 ANLVFANGIEAFYQRAKAAGVDSVLIADVPAEES 136
>sp|Q8Z7E0|TRPA_SALTI Tryptophan synthase alpha chain OS=Salmonella typhi GN=trpA PE=3
SV=1
Length = 268
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>sp|A9MWR3|TRPA_SALPB Tryptophan synthase alpha chain OS=Salmonella paratyphi B (strain
ATCC BAA-1250 / SPB7) GN=trpA PE=3 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>sp|B4T6X2|TRPA_SALNS Tryptophan synthase alpha chain OS=Salmonella newport (strain
SL254) GN=trpA PE=3 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>sp|B4TJK9|TRPA_SALHS Tryptophan synthase alpha chain OS=Salmonella heidelberg (strain
SL476) GN=trpA PE=3 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>sp|B5R6M4|TRPA_SALG2 Tryptophan synthase alpha chain OS=Salmonella gallinarum (strain
287/91 / NCTC 13346) GN=trpA PE=3 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>sp|B5R3P3|TRPA_SALEP Tryptophan synthase alpha chain OS=Salmonella enteritidis PT4
(strain P125109) GN=trpA PE=3 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>sp|B5FU65|TRPA_SALDC Tryptophan synthase alpha chain OS=Salmonella dublin (strain
CT_02021853) GN=trpA PE=3 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
>sp|B5F4M3|TRPA_SALA4 Tryptophan synthase alpha chain OS=Salmonella agona (strain SL483)
GN=trpA PE=3 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 209 LALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVF 268
L LG FS D ++ R+ + G TP + +++ + IGL++ +VF
Sbjct: 48 LELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVF 107
Query: 269 LAGIIFFSYKIGVEGKDAVISIKSHVEES 297
GI F + G D+V+ VEES
Sbjct: 108 NNGIDAFYARCEQVGVDSVLVADVPVEES 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,884,232
Number of Sequences: 539616
Number of extensions: 8809732
Number of successful extensions: 39230
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 39108
Number of HSP's gapped (non-prelim): 138
length of query: 651
length of database: 191,569,459
effective HSP length: 124
effective length of query: 527
effective length of database: 124,657,075
effective search space: 65694278525
effective search space used: 65694278525
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)