Query 006309
Match_columns 651
No_of_seqs 155 out of 816
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 21:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2365 Uncharacterized membra 100.0 1E-104 2E-109 860.4 25.6 621 1-644 64-774 (808)
2 PRK10983 putative inner membra 100.0 2.8E-26 6.2E-31 246.0 35.8 185 455-644 158-347 (368)
3 PF01594 UPF0118: Domain of un 100.0 3.3E-27 7.1E-32 244.7 25.4 192 448-642 131-327 (327)
4 TIGR02872 spore_ytvI sporulati 100.0 4.4E-26 9.5E-31 236.9 27.7 192 445-639 142-337 (341)
5 COG0628 yhhT Predicted permeas 99.9 2.9E-26 6.2E-31 243.0 26.1 187 457-646 154-345 (355)
6 PRK12287 tqsA pheromone autoin 99.9 1.7E-22 3.6E-27 214.4 25.1 183 457-643 144-330 (344)
7 KOG2365 Uncharacterized membra 98.1 4.6E-05 1E-09 86.0 13.7 209 244-476 363-596 (808)
8 PF01594 UPF0118: Domain of un 90.0 14 0.00031 38.7 16.3 28 89-116 9-36 (327)
9 PF04306 DUF456: Protein of un 82.9 2.9 6.3E-05 40.2 6.0 86 550-637 2-97 (140)
10 COG0628 yhhT Predicted permeas 81.9 81 0.0018 34.1 24.8 37 242-278 51-88 (355)
11 PF10136 SpecificRecomb: Site- 81.1 1.3E+02 0.0029 36.0 22.7 138 453-606 360-510 (643)
12 PRK10983 putative inner membra 74.1 1.1E+02 0.0023 33.9 15.5 43 82-124 15-57 (368)
13 PF10691 DUF2497: Protein of u 68.0 3.1 6.8E-05 36.1 1.6 28 302-337 44-71 (73)
14 PF06679 DUF1180: Protein of u 55.6 51 0.0011 32.9 7.7 25 69-97 92-116 (163)
15 TIGR02872 spore_ytvI sporulati 50.9 3.2E+02 0.0069 28.7 23.2 36 85-120 6-41 (341)
16 PRK12270 kgd alpha-ketoglutara 50.8 49 0.0011 41.4 8.0 68 111-193 116-185 (1228)
17 PF11744 ALMT: Aluminium activ 40.7 6E+02 0.013 28.9 19.9 50 255-304 154-205 (406)
18 COG1377 FlhB Flagellar biosynt 40.2 3.2E+02 0.0069 30.7 11.6 100 145-253 45-152 (363)
19 KOG2675 Adenylate cyclase-asso 39.1 35 0.00075 38.8 4.1 42 33-76 227-268 (480)
20 PF13955 Fst_toxin: Toxin Fst, 38.8 33 0.00072 23.4 2.4 18 624-641 3-20 (21)
21 COG3859 Predicted membrane pro 36.4 1.2E+02 0.0026 30.8 6.8 34 541-574 16-55 (185)
22 COG2839 Uncharacterized protei 35.0 2.3E+02 0.005 28.3 8.4 93 545-639 16-118 (160)
23 COG4129 Predicted membrane pro 34.2 1.9E+02 0.0042 31.9 8.8 65 513-579 11-89 (332)
24 PRK09509 fieF ferrous iron eff 33.9 6E+02 0.013 27.0 13.5 27 240-266 144-170 (299)
25 KOG2629 Peroxisomal membrane a 33.8 1.3E+02 0.0027 32.8 7.1 35 70-108 80-114 (300)
26 PF14362 DUF4407: Domain of un 32.1 6.4E+02 0.014 26.7 14.5 19 268-286 94-112 (301)
27 PF08566 Pam17: Mitochondrial 30.7 1.2E+02 0.0027 30.6 6.0 39 594-638 67-106 (173)
28 COG3827 Uncharacterized protei 30.4 32 0.0007 35.7 2.0 28 302-337 199-226 (231)
29 PRK12287 tqsA pheromone autoin 27.5 8.2E+02 0.018 26.5 26.2 16 180-195 7-22 (344)
30 PLN03223 Polycystin cation cha 26.6 1E+03 0.022 31.6 13.9 61 486-547 1306-1366(1634)
31 PF00860 Xan_ur_permease: Perm 26.5 1.4E+02 0.003 32.9 6.3 112 496-615 270-382 (389)
32 PF03904 DUF334: Domain of unk 25.3 8.3E+02 0.018 25.9 14.7 40 501-546 180-219 (230)
33 PRK10720 uracil transporter; P 25.2 1.8E+02 0.004 32.8 6.9 142 497-649 264-416 (428)
34 PF06645 SPC12: Microsomal sig 24.7 3.1E+02 0.0067 23.9 6.7 61 248-312 9-70 (76)
35 PF06679 DUF1180: Protein of u 24.2 2.3E+02 0.0051 28.3 6.6 7 131-137 128-134 (163)
36 COG0053 MMT1 Predicted Co/Zn/C 24.0 9.3E+02 0.02 26.0 11.8 36 234-270 140-175 (304)
37 PF07319 DnaI_N: Primosomal pr 21.8 49 0.0011 29.6 1.3 35 297-331 26-63 (94)
38 PF10831 DUF2556: Protein of u 20.9 83 0.0018 25.6 2.3 16 185-200 6-21 (53)
39 TIGR03546 conserved hypothetic 20.8 4E+02 0.0086 26.4 7.4 29 610-644 110-138 (154)
40 PF15361 RIC3: Resistance to i 20.7 3.6E+02 0.0079 26.5 7.2 11 89-99 93-103 (152)
41 PRK13109 flhB flagellar biosyn 20.5 1.1E+03 0.023 26.5 11.5 54 211-267 114-167 (358)
No 1
>KOG2365 consensus Uncharacterized membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-104 Score=860.40 Aligned_cols=621 Identities=48% Similarity=0.743 Sum_probs=558.1
Q ss_pred CCcCCCCCCCCCCCCCCCCchhHhhhhhccCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCcc-ccCCc
Q 006309 1 MELVPFSDDPDKKSSSTTPPWQDMFRSASIRKPSATSNSQAPLP----------ESHAPPPSQANSTAPGQKTT-CSGDP 69 (651)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~ 69 (651)
|||+||. ++.++..+..+.|++||||++.|+|..- |.- ++-++||.++..-+.++.+. +..|.
T Consensus 64 t~L~Pfk-s~~~~~~~hwL~~l~~~~s~~~~~~~~l-----P~~~~s~isEkiyttfasp~r~~~~~g~~~l~~Ls~~~s 137 (808)
T KOG2365|consen 64 TELVPFK-SETKSSIPHWLAWLEMFRSASSRKPQDL-----PSSSSSSISEKIYTTFASPPRKPSGDGSSSLTSLSTVDS 137 (808)
T ss_pred ceeecch-hhhhhhhHHHHHHHHHhcchhhhccccC-----CcccchhHHHHHhhhhcCCCCCeeeecccceeeeeechh
Confidence 6899999 8999999999999999999999999872 222 22223444443334444555 78899
Q ss_pred chHHHHHHHHHhhHHHHHHHHH--HHHHHHHHhhhhhHH--HHHH----h---hcchhhHHHHHHHhcccccccchhhhh
Q 006309 70 QVRLALYIALAHAGLAFTLFIL--YFIFKLLQDYIRPIQ--WAIL----L---SIPLRGIQQALVAFWSEPLQLGLTETV 138 (651)
Q Consensus 70 ~~~~~~~~~m~h~gl~~~~~~l--~~~~~ll~~~~r~~q--wa~l----~---s~~lr~~q~~lv~~~~~~l~~g~~~~~ 138 (651)
|+|++.|+||||+|++.+|+++ |.+++|+++|+||+| |+++ | |+|++.+|.++++||..|+|.|.++.+
T Consensus 138 ~~~~~~~~~~a~~~l~~~i~~far~wV~~L~~~Y~~~i~yvwn~~nkkl~RsfSiP~wii~~~~~~~~~gplR~gvf~Vv 217 (808)
T KOG2365|consen 138 QARLAMYIAMAHAGLAFAICVFARYWVGKLLQEYLRPIQYVWNILNKKLCRSFSIPLWIIQETLVDFWSGPLRLGVFEVV 217 (808)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhchhhhhHHhhcCccHHHHHHHHHHHhccchhcchhhhh
Confidence 9999999999999999999999 999999999999999 9999 9 999999999999999999999999999
Q ss_pred hhchhhhhhhhcchhhhh--------HHHHHHHHHhh------ccC---CCCCC-CCchhhHHHH-----------HHHH
Q 006309 139 LAVPVAIFKVFVGTLVDI--------KEVFFKVFLKK------LKN---NGPRH-SRSGFSKLVR-----------WLVS 189 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~d~--------~~~~~~~~~~~------~~~---~~~~~-~~~~~~~~~~-----------wl~~ 189 (651)
+|+|..++..+.|+..|. ...++|..+|+ |+| ++.|+ ..-||+|++. |+++
T Consensus 218 ~av~~~~~~~~ig~~~~seellekenss~~~~~s~~pPnvekv~~pakek~t~~~~~lg~~~l~~tstvdeaiTgDwl~~ 297 (808)
T KOG2365|consen 218 LAVPVSVFNVFIGSIVDSEELLEKENSSVCFRVSLRPPNVEKVSKPAKEKRTRKKNDLGFSKLVKTSTVDEAITGDWLVS 297 (808)
T ss_pred hhHhhHHHHhhhcCcCcHHHHHhhhccccccccccCCCCcccCCCCCCcCCCCCCcccccccccccchhhhhccCcEEEe
Confidence 999999999999999999 44567888888 455 22222 5679999999 9999
Q ss_pred HHHHHHHHHhhh-hhhhHHHHHHHHHhhccccccccccccccccc----------CcCC------------------CCc
Q 006309 190 FAVFVIAYETIG-AVGSLVILALGFLFSTTNVDSTMSAVSSFRSK----------SFGR------------------TPF 240 (651)
Q Consensus 190 ~~~f~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~------------------~~~ 240 (651)
|+||+++|+++| ..+++.++.++|+++.+++++..+++++.|.+ ++++ +++
T Consensus 298 ~~v~~ia~~~I~r~~g~l~LL~~pf~~~~~~~~~~~~gV~~~~~nfldstWqkmssf~~~~~~a~~~~pi~~~~k~L~~i 377 (808)
T KOG2365|consen 298 FGVFVIAYERIGRGIGSLVLLSLPFLFSSKNVDSSLSGVSSLRSNFLDSTWQKMSSFRRSHFTAYFTRPIMTRLKTLVAI 377 (808)
T ss_pred ehHHHHHHHHHHcccceEEEeecchheehhhhHHHHHhHHHHHHhhhhhhHHhhhHHHHhheeeeecccHHHHHHHHHhh
Confidence 999999999999 89999999999999999999999999988877 3333 348
Q ss_pred chHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccccccccccchhhhhhcccCCcchhhhh
Q 006309 241 SSYFTRRILKRLETIVAIGLIVGMMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEESNYAERLGVKKWMEENDVPGMVDR 320 (651)
Q Consensus 241 ~~~~~~~L~~~ld~vvSi~lIl~liv~~l~~svFl~~qi~~E~~~avi~l~s~v~n~t~~~~pel~~WLpendv~~~vds 320 (651)
|+++-++|++++|++.|+++|+++.+|+.+...|+++|+|+|.+|. +++++|++|++-.++||+.+|.||.
T Consensus 378 d~~v~~~lhd~~Dvl~S~~I~fll~ig~~~~~~~~~~k~H~E~vh~-~e~tsn~~n~~~~~~p~~~d~~~~~-------- 448 (808)
T KOG2365|consen 378 DLIVLMILHDGSDVLLSGVIFFLLKIGVEGKDAVYSLKSHVEEVHY-AEKTSNKQNMDENDVPGMVDMYTTK-------- 448 (808)
T ss_pred chhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH-HHHhhhhccCCcccchhHhhhhhHH--------
Confidence 9999999999999999999999999999999999999999999995 7999999999999999988888875
Q ss_pred HHHHHHHHHHHHHHhhhhhhceeeeecccccccccCCCCCcccchh---hc--ccchhhHhhhhhccccchhhhhhHHHH
Q 006309 321 YTTTFYETVSEQVDSLAMQYNMTEFVTGIKHFVIAPPAGSSEQSKA---LT--SLSPYTQKLMSLRNRVTKREWKQIYTE 395 (651)
Q Consensus 321 ~~~~~Y~~v~e~id~la~qyn~te~~~~v~~~~~~~~~~~~~~~~~---l~--~~~~~~~~l~~~~~~~~~~~w~~~~~~ 395 (651)
+.||.+.|++|++||||||||+.+++||++.+++.|++..++| +| .||.|.+++.++ +.+++|+++|.+
T Consensus 449 ---~e~~~~~~~~~~~ayqygrtwl~~~i~~~~~~k~~na~~~e~qvl~~~d~ly~~w~~~n~~f---v~~~~~~~~~v~ 522 (808)
T KOG2365|consen 449 ---FEYETVSEQIDSLAYQYGRTWLVTGIKHFVIGKPQNATSTESQVLITPDPLYEKWMSLNTRF---VKNREWSQIYVE 522 (808)
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHhhhHHHhcCCCCccccchHhHhhcccHHHHHHHHhccch---hhccccceeeeE
Confidence 2388899999999999999999999999999988885555554 44 356666554443 689999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhhhhhhHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006309 396 VDAIFRELVITREDLVQKAKEFAYQGINVSQRVFAGSASVLGSSAKLMLSTGYLIISGAAEVFNFVSQLMIFLWVLYYLI 475 (651)
Q Consensus 396 vd~~~~~~~~~~~~l~~~~k~~~~~~~~v~~sI~~S~~svl~~~~sll~s~~s~ils~g~~v~nfli~liIfl~~LFYLL 475 (651)
.+-.+++.+++++|+++++|||+.++|+|+||++.+..+.+++.+++++|++++++++|++++||+++++||++++||++
T Consensus 523 ~q~~~~~di~~~~dlv~~vken~~t~m~I~qsv~~~~a~nVs~~~~~v~sL~~Ii~s~g~~llNfi~~liIFLt~lyyLL 602 (808)
T KOG2365|consen 523 VQVIFREDIITREDLVEKVKENAVTGMDISQSVFSSSASNVSGGAKFVFSLGNIIISGGAELLNFISQLIIFLTVLYYLL 602 (808)
T ss_pred eeehhhHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred hcCcch--HHHHHH--hhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 006309 476 TSESGG--VTEQVM--GMLPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFISALF 551 (651)
Q Consensus 476 sd~~~~--l~~~v~--~llP~~~~~~~rl~~~i~~aI~gV~~g~l~iAl~qGilT~Igf~IfGvp~a~llg~LaailslI 551 (651)
++++++ .++++. +++|.....++++.+.++.+|+|||.+++|||.|||++||+.|++||++++|+++++|++++.+
T Consensus 603 Sss~~~~~plqWa~~l~~l~~~~~Ssn~i~~~~e~AI~GVf~aSakmA~FyGlyTwl~h~lf~inivf~pS~lA~I~aa~ 682 (808)
T KOG2365|consen 603 SSSSGGVTPLQWAQVLNMLPINASSSNRIVEVLELAISGVFLASAKMAFFYGLYTWLLHRLFNINIVFMPSVLAFISAAL 682 (808)
T ss_pred cccCCCeeehhhhhhcccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEEeehhHHHHHHhhC
Confidence 997665 445554 5667666788999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHH-HhcchhHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHhhccccccccchhhHHHH
Q 006309 552 PIFPFWFATIPAAVQLL-LESRYIVAISLSVIHLVLLDYGTCEIQEDIPGYSPYLTGLSIIGGMTLFPSALELLVIGDLI 630 (651)
Q Consensus 552 Pi~Gt~iV~IPaal~Ll-~qG~~~~AI~L~i~~~l~~~~idn~I~~~i~GiHP~Lt~LsIiGGl~~F~~Gl~GlIlGPLI 630 (651)
|++|+|++.||+++.++ ++|+..+|+++.+.|++++.+.|..||.+++|.|||+|+|||+||+|++ |++|+|+||++
T Consensus 683 Pi~p~y~aaIpa~l~LwLv~G~g~~Avil~V~hl~p~~f~ds~iy~dI~GshpYlTGLAIiGG~y~l--gl~gaiiGpii 760 (808)
T KOG2365|consen 683 PIFPYYFAAIPAALQLWLVEGRGIVAVILSVTHLVPMEFGDSEIYDDIPGSHPYLTGLAIIGGVYLL--GLVGAIIGPII 760 (808)
T ss_pred cccchHHHHHHHHHHHHhhcCcchhhHHHHHHHhhHHHhhhhhhhhcCCCCCcceeeehhhccchhh--hhhhhhhhhhH
Confidence 99999999999999996 5999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhhhcc
Q 006309 631 AGSNYGPTDNYSCH 644 (651)
Q Consensus 631 l~ll~~L~~iy~~~ 644 (651)
+|+++++.++|-.+
T Consensus 761 lc~~~v~snIyl~~ 774 (808)
T KOG2365|consen 761 LCFVMVFSNIYLLQ 774 (808)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999776
No 2
>PRK10983 putative inner membrane protein; Provisional
Probab=99.96 E-value=2.8e-26 Score=245.96 Aligned_cols=185 Identities=18% Similarity=0.156 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhh-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006309 455 AEVFNFVSQLMIFLWVLYYLITSESGGVTEQVMGM-LPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFF 533 (651)
Q Consensus 455 ~~v~nfli~liIfl~~LFYLLsd~~~~l~~~v~~l-lP~~~~~~~rl~~~i~~aI~gV~~g~l~iAl~qGilT~Igf~If 533 (651)
.++.+++++++++++.+||++.|+ +++.+++.++ .|..++..+++.+.+.+++++++.|++.+|++||++++++|+++
T Consensus 158 ~~~~~~~~~l~l~l~~~ff~l~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~~l~a~i~gvl~~ig~~i~ 236 (368)
T PRK10983 158 AHIGRFMMHCALMLLFSALLYWRG-EQVALGIRHFATRLAGKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAIS 236 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567778888888999999995 8888888876 46666667788999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhccccccccCC----CCCChHHHHHH
Q 006309 534 KIHFLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLVLLDYGTCEIQEDI----PGYSPYLTGLS 609 (651)
Q Consensus 534 Gvp~a~llg~LaailslIPi~Gt~iV~IPaal~Ll~qG~~~~AI~L~i~~~l~~~~idn~I~~~i----~GiHP~Lt~Ls 609 (651)
|+|++.++|+++++.++ |.+||+++|+|++++++.+|+...++.+++++. +.+.+||.++|.+ .++||.+++++
T Consensus 237 gvp~a~llg~l~~~~~i-~~~G~~~~~ip~~~~~~~~g~~~~~~~~~~~~~-vv~~idnil~P~l~g~~~~l~~~~il~~ 314 (368)
T PRK10983 237 GVPYATLLTVLMILSCL-VQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSC-VVGTLDNVIRPMLIRMGADLPMILILSG 314 (368)
T ss_pred cCCHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCChHHHHHHHHHHH-HHHHhhheeeeeeecCCCCCCHHHHHHH
Confidence 99999999999988876 789999999999999999999888888777764 4566677777655 45899999999
Q ss_pred HHHhhccccccccchhhHHHHHHHHHHHHHhhhcc
Q 006309 610 IIGGMTLFPSALELLVIGDLIAGSNYGPTDNYSCH 644 (651)
Q Consensus 610 IiGGl~~F~~Gl~GlIlGPLIl~ll~~L~~iy~~~ 644 (651)
++||..+| |+.|+++||+++++++++++.|+++
T Consensus 315 ~~~G~~~f--G~~G~~lgp~i~a~~~~l~~~~~~~ 347 (368)
T PRK10983 315 VIGGLIAF--GMIGLFIGPVVLAVSYRLFSAWVHE 347 (368)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999999999999999865
No 3
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=99.96 E-value=3.3e-27 Score=244.66 Aligned_cols=192 Identities=24% Similarity=0.352 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006309 448 YLIISGAAEVFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISK-PARIRCVEVIDNAISGVLLATVEIAFFQGCLT 526 (651)
Q Consensus 448 s~ils~g~~v~nfli~liIfl~~LFYLLsd~~~~l~~~v~~llP~~~-~~~~rl~~~i~~aI~gV~~g~l~iAl~qGilT 526 (651)
+.+.+...++++++.+++++++.+||++.|+ +++.+++.+.+|.+. +..+++.+++++.+++++.+|+.+++++|+.+
T Consensus 131 ~~~~~~~~~~~~~l~~~~i~l~~~~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 209 (327)
T PF01594_consen 131 SSLSSFISSIFSFLFNFFIFLIFLFFFLLDG-EKLRRFLIRLLPPRNRERFEEILRKIDQSLSAYLKGQLILALIQGVLT 209 (327)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667888899999999999999995 899999999999884 35577999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcchhHHHHHHHHHHhh----hhccccccccCCCCCC
Q 006309 527 WLLFRFFKIHFLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLVL----LDYGTCEIQEDIPGYS 602 (651)
Q Consensus 527 ~Igf~IfGvp~a~llg~LaailslIPi~Gt~iV~IPaal~Ll~qG~~~~AI~L~i~~~l~----~~~idn~I~~~i~GiH 602 (651)
+++|+++|+|+++++|++++++++||++|+.++++|++++.+.+|+...++..++...+. .++++|++.++..++|
T Consensus 210 ~i~~~~~gi~~~~l~~~l~~i~~~IP~iG~~i~~ip~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~il~P~i~g~~~~i~ 289 (327)
T PF01594_consen 210 FIGFSIFGIPYALLLGVLAFILSFIPYIGPIIVLIPAAIYALLQGGPWAALIVLIVFIVIQQLEDNILRPKIMGRSLGIH 289 (327)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccchhhhcccCCC
Confidence 999999999999999999999999999999999999999999999966677666555444 4555556666667799
Q ss_pred hHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHhhh
Q 006309 603 PYLTGLSIIGGMTLFPSALELLVIGDLIAGSNYGPTDNYS 642 (651)
Q Consensus 603 P~Lt~LsIiGGl~~F~~Gl~GlIlGPLIl~ll~~L~~iy~ 642 (651)
|+++++++++|..+| |+.|+++||+++++...++|.||
T Consensus 290 p~~~l~~~~~g~~~f--G~~G~il~~pi~~~~~~~~~~~~ 327 (327)
T PF01594_consen 290 PLLILLAVIIGGYLF--GFIGLILAPPILAVIKAIFEEYR 327 (327)
T ss_pred HHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999 99999999999999999999996
No 4
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=99.95 E-value=4.4e-26 Score=236.87 Aligned_cols=192 Identities=18% Similarity=0.230 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006309 445 STGYLIISGAAEVFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKPAR-IRCVEVIDNAISGVLLATVEIAFFQG 523 (651)
Q Consensus 445 s~~s~ils~g~~v~nfli~liIfl~~LFYLLsd~~~~l~~~v~~llP~~~~~~-~rl~~~i~~aI~gV~~g~l~iAl~qG 523 (651)
++.+.+.+...++.+++++++++++.+||++.|+ +++.+++.++.|.+++.+ .++.+++++.++++++|++.+|+++|
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~~i~~ff~l~d~-~~~~~~~~~l~p~~~~~~~~~i~~~i~~~~~~y~~~~~~~~~i~g 220 (341)
T TIGR02872 142 NLITSIPSFIASIPNFLIVLLFTLIATFFISKDL-PRLKSKLFSILPERTSQKLKNIFSELKKAAFGFLKAQLILVLITF 220 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566788888888889999999995 889999999999776544 56899999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcchhHHHHHHHHHHh---hhhccccccccCCCC
Q 006309 524 CLTWLLFRFFKIHFLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLV---LLDYGTCEIQEDIPG 600 (651)
Q Consensus 524 ilT~Igf~IfGvp~a~llg~LaailslIPi~Gt~iV~IPaal~Ll~qG~~~~AI~L~i~~~l---~~~~idn~I~~~i~G 600 (651)
+.++++++++|+|+++++|++++++++||++||+++++|++++.+.+|++..++.+.+++.+ ..++++|++.++..+
T Consensus 221 ~~~~i~~~~~gvp~a~~~~~l~~~~~~IP~vG~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~P~i~g~~~~ 300 (341)
T TIGR02872 221 VIVLIGLLIIGVDYALTLALIIGIVDILPILGPGAVLVPWALYLFITGNYAMGIGLLILYLVVLILRQILEPKVVSSSIG 300 (341)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhHhhHHhhccCC
Confidence 99999999999999999999999999999999999999999999999988777766555543 345566666677778
Q ss_pred CChHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Q 006309 601 YSPYLTGLSIIGGMTLFPSALELLVIGDLIAGSNYGPTD 639 (651)
Q Consensus 601 iHP~Lt~LsIiGGl~~F~~Gl~GlIlGPLIl~ll~~L~~ 639 (651)
+||.++++|+++|...| |+.|+++||++++++.++++
T Consensus 301 l~p~~vl~~~l~g~~~~--G~~G~~l~~~~~~~~~~~~~ 337 (341)
T TIGR02872 301 LHPLATLISMYIGLKLF--GFLGLIFGPVIVVLFKALIE 337 (341)
T ss_pred CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999776654
No 5
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=243.02 Aligned_cols=187 Identities=20% Similarity=0.304 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 006309 457 VFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKPAR-IRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKI 535 (651)
Q Consensus 457 v~nfli~liIfl~~LFYLLsd~~~~l~~~v~~llP~~~~~~-~rl~~~i~~aI~gV~~g~l~iAl~qGilT~Igf~IfGv 535 (651)
+.+.+++++++++.+||+++|+ +++.+++.+.+|.+.+.+ ++..++++++++++++||..+|+++|+.++++|+++|+
T Consensus 154 ~~~~~~~~~l~~~~~ff~L~d~-~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~gq~i~al~~gi~~~igl~ilgv 232 (355)
T COG0628 154 LLSLIVSLLLVLVLLFFLLLDG-ERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRGQVLVALIVGILTGIGLLILGV 232 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4677778888888999999995 999999999999876533 56789999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhcccc----ccccCCCCCChHHHHHHHH
Q 006309 536 HFLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLVLLDYGTC----EIQEDIPGYSPYLTGLSII 611 (651)
Q Consensus 536 p~a~llg~LaailslIPi~Gt~iV~IPaal~Ll~qG~~~~AI~L~i~~~l~~~~idn----~I~~~i~GiHP~Lt~LsIi 611 (651)
||++++|++++++++||++|++++++|++++.+.+++...++..++...++.+..|| ++.++..++||+.+++|++
T Consensus 233 p~alllgil~g~~~lIP~iG~~i~~ip~~i~al~~~~~~~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilisll 312 (355)
T COG0628 233 PYALLLGLLAGLLSLIPYIGPVIGLIPAVIIALLQGGPWGALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLSLL 312 (355)
T ss_pred cHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999844555554444444444555 4455556799999999999
Q ss_pred HhhccccccccchhhHHHHHHHHHHHHHhhhcccc
Q 006309 612 GGMTLFPSALELLVIGDLIAGSNYGPTDNYSCHCT 646 (651)
Q Consensus 612 GGl~~F~~Gl~GlIlGPLIl~ll~~L~~iy~~~~~ 646 (651)
+|..+| |+.|+++||++.+++.++++.|.++..
T Consensus 313 ~g~~l~--G~~G~ila~pl~~~~k~~~~~~~~~~~ 345 (355)
T COG0628 313 GGGSLF--GFVGLILAPPLAAVLKVLLRAWLEEEL 345 (355)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999988543
No 6
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=99.91 E-value=1.7e-22 Score=214.39 Aligned_cols=183 Identities=16% Similarity=0.180 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006309 457 VFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIH 536 (651)
Q Consensus 457 v~nfli~liIfl~~LFYLLsd~~~~l~~~v~~llP~~~~~~~rl~~~i~~aI~gV~~g~l~iAl~qGilT~Igf~IfGvp 536 (651)
+.+++.+++++++.+||++.|. +++.+++.+.+|.+++ ..+..++.++.++++++|+..+|+++|+.++++++++|+|
T Consensus 144 ~~~~~~~~~~~li~~ff~l~d~-~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~Y~~g~~i~~~i~gv~~~i~l~ilgv~ 221 (344)
T PRK12287 144 LSNAMSSIFLLLLTVVFMLLEV-PQLPGKFQQMMARPVE-GMAAIQRALDSVSHYLVLKTAISIITGLVAWAMLAALDVR 221 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555666667777889999995 8899999999997764 3456788888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcchhHHHHHHHHH----HhhhhccccccccCCCCCChHHHHHHHHH
Q 006309 537 FLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIH----LVLLDYGTCEIQEDIPGYSPYLTGLSIIG 612 (651)
Q Consensus 537 ~a~llg~LaailslIPi~Gt~iV~IPaal~Ll~qG~~~~AI~L~i~~----~l~~~~idn~I~~~i~GiHP~Lt~LsIiG 612 (651)
|++++|++++++++||++||.++++|++++.+.+++...|+..++.. .+..++++|++.++..++||..+++|++.
T Consensus 222 ~alllgil~glln~IPyiG~~i~~ip~~l~~~~~~~~~~al~v~i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~ 301 (344)
T PRK12287 222 FAFVWGLLAFALNYIPNIGSVLAAIPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIF 301 (344)
T ss_pred hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999998887776677655444 44456677777778888999999999999
Q ss_pred hhccccccccchhhHHHHHHHHHHHHHhhhc
Q 006309 613 GMTLFPSALELLVIGDLIAGSNYGPTDNYSC 643 (651)
Q Consensus 613 Gl~~F~~Gl~GlIlGPLIl~ll~~L~~iy~~ 643 (651)
|...+ |+.|+++++++.+++..+.+.+..
T Consensus 302 gg~l~--G~~G~ilavPl~~iik~~~~~~~~ 330 (344)
T PRK12287 302 WGWLL--GPVGMLLSVPLTIIVKIALEQTAG 330 (344)
T ss_pred HHHHH--HHhHHHHHHHHHHHHHHHHhcCCC
Confidence 99899 999999999999999999988875
No 7
>KOG2365 consensus Uncharacterized membrane protein [Function unknown]
Probab=98.06 E-value=4.6e-05 Score=86.01 Aligned_cols=209 Identities=34% Similarity=0.398 Sum_probs=126.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH--HH---HHHHHHHHHHhhhhhhHHHHhhhccccccccccchhhhhhcccCCcchhh
Q 006309 244 FTRRILKRLETIVAIGLIVGMMV--VF---LAGIIFFSYKIGVEGKDAVISIKSHVEESNYAERLGVKKWMEENDVPGMV 318 (651)
Q Consensus 244 ~~~~L~~~ld~vvSi~lIl~liv--~~---l~~svFl~~qi~~E~~~avi~l~s~v~n~t~~~~pel~~WLpendv~~~v 318 (651)
+++-|+..+++++++-.++.+++ +. +.+.+|+-++++.|+++++-.++.|++..+|+|.-+-++|++|||+++++
T Consensus 363 ~~~pi~~~~k~L~~id~~v~~~lhd~~Dvl~S~~I~fll~ig~~~~~~~~~~k~H~E~vh~~e~tsn~~n~~~~~~p~~~ 442 (808)
T KOG2365|consen 363 FTRPIMTRLKTLVAIDLIVLMILHDGSDVLLSGVIFFLLKIGVEGKDAVYSLKSHVEEVHYAEKTSNKQNMDENDVPGMV 442 (808)
T ss_pred ecccHHHHHHHHHhhchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHhhhhccCCcccchhHh
Confidence 44557778999999999999999 66 88899999999999999999999999999999988889999999999998
Q ss_pred hhHHHHHHHHHHH---HHHhhhhhhceeeeecccccccccCCCCCcccchhhcccchhhHhhhhhccccchhhhhhHHHH
Q 006309 319 DRYTTTFYETVSE---QVDSLAMQYNMTEFVTGIKHFVIAPPAGSSEQSKALTSLSPYTQKLMSLRNRVTKREWKQIYTE 395 (651)
Q Consensus 319 ds~~~~~Y~~v~e---~id~la~qyn~te~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~w~~~~~~ 395 (651)
|- |++-.| .+|+-+.+...-. -+-+-|-++....++.+..+ ..|+ + .-.-|+.+|..
T Consensus 443 d~-----~~~~~e~~~~~~~~~~~ayqyg-rtwl~~~i~~~~~~k~~na~-------~~e~-q------vl~~~d~ly~~ 502 (808)
T KOG2365|consen 443 DM-----YTTKFEYETVSEQIDSLAYQYG-RTWLVTGIKHFVIGKPQNAT-------STES-Q------VLITPDPLYEK 502 (808)
T ss_pred hh-----hhHHHHHHHHHHHHHHHHHHhh-hHHHHhhhHHHhcCCCCccc-------cchH-h------HhhcccHHHHH
Confidence 54 454433 1222221111100 00000000000000111100 0000 0 00122222222
Q ss_pred HHHHH------HHh--------hhcHHHHHHHHHHHhh---hhhhhHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006309 396 VDAIF------REL--------VITREDLVQKAKEFAY---QGINVSQRVFAGSASVLGSSAKLMLSTGYLIISGAAEVF 458 (651)
Q Consensus 396 vd~~~------~~~--------~~~~~~l~~~~k~~~~---~~~~v~~sI~~S~~svl~~~~sll~s~~s~ils~g~~v~ 458 (651)
..+.. ++. ..-++|+..+ +|-+. ++++...+|.+|+|+++..|.++.++.. .+.+.-++
T Consensus 503 w~~~n~~fv~~~~~~~~~v~~q~~~~~di~~~-~dlv~~vken~~t~m~I~qsv~~~~a~nVs~~~~~v---~sL~~Ii~ 578 (808)
T KOG2365|consen 503 WMSLNTRFVKNREWSQIYVEVQVIFREDIITR-EDLVEKVKENAVTGMDISQSVFSSSASNVSGGAKFV---FSLGNIII 578 (808)
T ss_pred HHHhccchhhccccceeeeEeeehhhHhhhhH-HHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHH
Confidence 11111 111 2456688877 65544 9999999999999999999999988774 44444444
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006309 459 NFVSQLMIFLWVLYYLIT 476 (651)
Q Consensus 459 nfli~liIfl~~LFYLLs 476 (651)
.+...++=|+.-+--|++
T Consensus 579 s~g~~llNfi~~liIFLt 596 (808)
T KOG2365|consen 579 SGGAELLNFISQLIIFLT 596 (808)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 444444444444433443
No 8
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=89.99 E-value=14 Score=38.74 Aligned_cols=28 Identities=18% Similarity=0.539 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhcchh
Q 006309 89 FILYFIFKLLQDYIRPIQWAILLSIPLR 116 (651)
Q Consensus 89 ~~l~~~~~ll~~~~r~~qwa~l~s~~lr 116 (651)
++++..+..+++++.|+-||+.++..++
T Consensus 9 l~~~~~~~~~~~~~~p~~~a~~la~~~~ 36 (327)
T PF01594_consen 9 LLLFLFLWFISPFLLPFVLALVLAYLLN 36 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555554444433
No 9
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=82.90 E-value=2.9 Score=40.17 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=50.8
Q ss_pred hcccc-hhhHHHHHHHHHHHHhcchhHHHHHHHHH---Hhhhhccc---cccccCCCCCChHHHH---HHHHHhhccccc
Q 006309 550 LFPIF-PFWFATIPAAVQLLLESRYIVAISLSVIH---LVLLDYGT---CEIQEDIPGYSPYLTG---LSIIGGMTLFPS 619 (651)
Q Consensus 550 lIPi~-Gt~iV~IPaal~Ll~qG~~~~AI~L~i~~---~l~~~~id---n~I~~~i~GiHP~Lt~---LsIiGGl~~F~~ 619 (651)
++|.+ |+.+++.-..+|.+.+|....+..+++.. .+.....| +....+..|.+-.-+. ++.+.|...+
T Consensus 2 v~P~lPG~~l~~~g~l~~~~~~g~~~~~~~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~ga~iG~IvG~f~~-- 79 (140)
T PF04306_consen 2 VVPVLPGTPLIWLGILLYAFFTGFSEFGWWFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWGAIIGGIVGFFVL-- 79 (140)
T ss_pred eeccCChHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--
Confidence 56777 67777888888888877542222222111 11223333 4444455566655544 4555555555
Q ss_pred cccchhhHHHHHHHHHHH
Q 006309 620 ALELLVIGDLIAGSNYGP 637 (651)
Q Consensus 620 Gl~GlIlGPLIl~ll~~L 637 (651)
+..|+++||.+-+++..+
T Consensus 80 ~p~G~iiG~~~Ga~l~El 97 (140)
T PF04306_consen 80 PPLGLIIGPFLGAFLGEL 97 (140)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 778999999998885544
No 10
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=81.85 E-value=81 Score=34.10 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=25.4
Q ss_pred hHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006309 242 SYFTRRILKR-LETIVAIGLIVGMMVVFLAGIIFFSYK 278 (651)
Q Consensus 242 ~~~~~~L~~~-ld~vvSi~lIl~liv~~l~~svFl~~q 278 (651)
..+.++++|+ .+-..++.++++++++.+....++..-
T Consensus 51 ~p~~~~L~k~~~~r~~a~~~~~ll~~~ii~~~~~~~~p 88 (355)
T COG0628 51 NPLVRRLEKRGIPRLLAVLLVLLLILLLIVLLGLLVIP 88 (355)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666 677778888888877777777666654
No 11
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=81.08 E-value=1.3e+02 Score=36.02 Aligned_cols=138 Identities=14% Similarity=0.206 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchH-----HHHHHhhCCCCchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 006309 453 GAAEVFNFVSQLMIFLWVLYYLITSESGGV-----TEQVMGMLPISKPARIRCVEVIDNAISG---VLLATVEIAFFQGC 524 (651)
Q Consensus 453 ~g~~v~nfli~liIfl~~LFYLLsd~~~~l-----~~~v~~llP~~~~~~~rl~~~i~~aI~g---V~~g~l~iAl~qGi 524 (651)
+...-+|+.+++++.-+.=|=+-++ ++-+ -..+.+. .+.+..+++.+.+-+.+++ -+.|++.+++-..+
T Consensus 360 ~~~~slNYa~gFvlI~llhfTvATK-QPAMTAaalA~~l~~~--~~~~~~~~la~lv~~l~RSQ~aAv~GNv~va~pvA~ 436 (643)
T PF10136_consen 360 GFLASLNYALGFVLIHLLHFTVATK-QPAMTAAALAAALEEN--GKSANLEKLADLVADLIRSQFAAVLGNVLVAFPVAL 436 (643)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcC-ChHhhHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444578888877554433333333 3432 2333333 2222335566666666553 45677777765554
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhccccc-cccCCC---
Q 006309 525 -LTWLLFRFFKIHFLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLVLLDYGTCE-IQEDIP--- 599 (651)
Q Consensus 525 -lT~Igf~IfGvp~a~llg~LaailslIPi~Gt~iV~IPaal~Ll~qG~~~~AI~L~i~~~l~~~~idn~-I~~~i~--- 599 (651)
+.|....++|-|..=---.-..+-++=|+ |+.+.+-- +.|++|++-++ +.++.||. .|.++.
T Consensus 437 li~~~~~~~~g~pll~~~kA~~~L~sl~p~-s~al~~AA-----------iaGV~LF~Sgl-IaG~~dN~~~y~rl~~rl 503 (643)
T PF10136_consen 437 LIAWGYAQLFGQPLLSPEKAAYLLHSLDPF-SPALLYAA-----------IAGVWLFLSGL-IAGYFDNWFVYNRLPERL 503 (643)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhcCcc-ccHHHHHH-----------HHHHHHHHHHH-HHhhHHHHHHHhCHHHHH
Confidence 45666688999987767777888899998 76554331 14555555554 45666774 455543
Q ss_pred CCChHHH
Q 006309 600 GYSPYLT 606 (651)
Q Consensus 600 GiHP~Lt 606 (651)
..||.+.
T Consensus 504 ~~hp~L~ 510 (643)
T PF10136_consen 504 RHHPRLK 510 (643)
T ss_pred HhChHHH
Confidence 3677665
No 12
>PRK10983 putative inner membrane protein; Provisional
Probab=74.07 E-value=1.1e+02 Score=33.94 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcchhhHHHHHHH
Q 006309 82 AGLAFTLFILYFIFKLLQDYIRPIQWAILLSIPLRGIQQALVA 124 (651)
Q Consensus 82 ~gl~~~~~~l~~~~~ll~~~~r~~qwa~l~s~~lr~~q~~lv~ 124 (651)
+-+++.+++++..+..++.|+.|+-||++.++.+|-.++.|-+
T Consensus 15 ~~~~l~~~l~~~~~~il~pFl~~ll~A~iLa~a~~Pl~~~L~~ 57 (368)
T PRK10983 15 LSVLFIAIMIVACFWVVQPFILGFAWAGMVVIATWPLLLKLQK 57 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667788889999999999999888877766665544
No 13
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=67.98 E-value=3.1 Score=36.12 Aligned_cols=28 Identities=43% Similarity=0.965 Sum_probs=21.1
Q ss_pred chhhhhhcccCCcchhhhhHHHHHHHHHHHHHHhhh
Q 006309 302 RLGVKKWMEENDVPGMVDRYTTTFYETVSEQVDSLA 337 (651)
Q Consensus 302 ~pel~~WLpendv~~~vds~~~~~Y~~v~e~id~la 337 (651)
+|-|++||++| .+.+|+.. |++-|.+.+
T Consensus 44 RPmLkeWLD~n-LP~lVErl-------Vr~EIeRi~ 71 (73)
T PF10691_consen 44 RPMLKEWLDEN-LPGLVERL-------VREEIERIA 71 (73)
T ss_pred HHHHHHHHHhc-cHHHHHHH-------HHHHHHHHh
Confidence 89999999998 88888665 455555544
No 14
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=55.59 E-value=51 Score=32.87 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=17.0
Q ss_pred cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006309 69 PQVRLALYIALAHAGLAFTLFILYFIFKL 97 (651)
Q Consensus 69 ~~~~~~~~~~m~h~gl~~~~~~l~~~~~l 97 (651)
|-.+-++|+.++ +.++.++||+.+-
T Consensus 92 ~~l~R~~~Vl~g----~s~l~i~yfvir~ 116 (163)
T PF06679_consen 92 PMLKRALYVLVG----LSALAILYFVIRT 116 (163)
T ss_pred cchhhhHHHHHH----HHHHHHHHHHHHH
Confidence 445778888765 5566677777763
No 15
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=50.89 E-value=3.2e+02 Score=28.72 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhcchhhHHH
Q 006309 85 AFTLFILYFIFKLLQDYIRPIQWAILLSIPLRGIQQ 120 (651)
Q Consensus 85 ~~~~~~l~~~~~ll~~~~r~~qwa~l~s~~lr~~q~ 120 (651)
+..+.+++.....+..++-|+-||++.+.-+|-.++
T Consensus 6 ~~~~~~~~~~l~~l~p~l~p~l~A~vla~ll~pl~~ 41 (341)
T TIGR02872 6 IGLIAIFVLAIYFALPYSLPFVIALILALILEPMVR 41 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777889999999999877666655444
No 16
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=50.83 E-value=49 Score=41.42 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=38.3
Q ss_pred hhcchhhHHHHHHHhcccccccchhhhhhhchhhhh-h-hhcchhhhhHHHHHHHHHhhccCCCCCCCCchhhHHHHHHH
Q 006309 111 LSIPLRGIQQALVAFWSEPLQLGLTETVLAVPVAIF-K-VFVGTLVDIKEVFFKVFLKKLKNNGPRHSRSGFSKLVRWLV 188 (651)
Q Consensus 111 ~s~~lr~~q~~lv~~~~~~l~~g~~~~~~~~~~~~~-~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 188 (651)
-++|||+++.+.++=-++ -|.+|.+.. | .-+.-+.|-|. .++.-.. +.+.+|..|--++-|.+
T Consensus 116 ~~~~LrG~a~aiAkNM~a---------SL~vPtaTsvr~Ip~k~L~dnR~-----~In~~l~-r~~GgKVSFThlI~kAv 180 (1228)
T PRK12270 116 EVTPLRGAAAAVAKNMDA---------SLEVPTATSVRAVPAKLLIDNRI-----VINNHLK-RTRGGKVSFTHLIGYAL 180 (1228)
T ss_pred ceeecccHHHHHHHHHHh---------hhccCceeeeecccHHHHHHHHH-----HHHHHhh-hccCCcccHHHHHHHHH
Confidence 478999999999883332 244554411 0 00122333333 3332212 22238999999999888
Q ss_pred HHHHH
Q 006309 189 SFAVF 193 (651)
Q Consensus 189 ~~~~f 193 (651)
.-++=
T Consensus 181 v~AL~ 185 (1228)
T PRK12270 181 VQALK 185 (1228)
T ss_pred HHHHH
Confidence 77654
No 17
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=40.67 E-value=6e+02 Score=28.92 Aligned_cols=50 Identities=10% Similarity=0.172 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccccc--cccccchh
Q 006309 255 IVAIGLIVGMMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEE--SNYAERLG 304 (651)
Q Consensus 255 vvSi~lIl~liv~~l~~svFl~~qi~~E~~~avi~l~s~v~n--~t~~~~pe 304 (651)
.+.+++.+.+++..+..=+|-+-+.|....+.+..+++.++. +.|-++.+
T Consensus 154 ~I~iGv~i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~ 205 (406)
T PF11744_consen 154 TIVIGVAICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSE 205 (406)
T ss_pred HHHHHHHHHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 346777777888888778888889999988887778777765 34444433
No 18
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.18 E-value=3.2e+02 Score=30.73 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=51.7
Q ss_pred hhhhhcchhhhhHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHH--------HHHHHhhhhhhhHHHHHHHHHhh
Q 006309 145 IFKVFVGTLVDIKEVFFKVFLKKLKNNGPRHSRSGFSKLVRWLVSFAVF--------VIAYETIGAVGSLVILALGFLFS 216 (651)
Q Consensus 145 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~f--------~~~~~~~g~~~~~~~~~~~~~~~ 216 (651)
.+-.+.....+--..+++.++.++.+...+ ..+ .++++..++.. +++.-..|.+. .++-.|+.|+
T Consensus 45 ~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~llp~~~~~~v~gi~~--~~~q~g~~fs 117 (363)
T COG1377 45 LLFFFGSYFARRLSGFLRAFLEFPESMDLD-DES----ALELIKALLLEILKALLPFLLVLLVVGLLA--NILQVGFLFS 117 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccC-chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCcccc
Confidence 344444445555556677888777333222 222 22232222222 11111222222 2344678899
Q ss_pred cccccccccccccccccCcCCCCcchHHHHHHHHhhh
Q 006309 217 TTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLE 253 (651)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ld 253 (651)
++.+.+.|+.+++++-..| .|+.. -+.+.+++-++
T Consensus 118 ~e~ikP~~~kinP~~G~KR-iFs~~-~~vEllKsllK 152 (363)
T COG1377 118 TEALKPKFSKLNPIKGLKR-IFSLQ-TLVELLKSLLK 152 (363)
T ss_pred ccccCCcccccChhHHHHH-HhhHH-HHHHHHHHHHH
Confidence 9999999999999876644 55433 33334443333
No 19
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=39.12 E-value=35 Score=38.84 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCcchHHHHH
Q 006309 33 PSATSNSQAPLPESHAPPPSQANSTAPGQKTTCSGDPQVRLALY 76 (651)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (651)
|...++...||||+|+|||++--.. +.....+.+++-|=|++
T Consensus 227 ~~~~s~~g~PPPPPP~PPp~~~~~~--~~~~~~~~~k~~~~AlF 268 (480)
T KOG2675|consen 227 PKAASAPGAPPPPPPAPPPAPFFAD--SNPPSSDANKGGRGALF 268 (480)
T ss_pred cCcccCCCCCCCCCCCCCCcccccc--cCCCCcccccccHHHHH
Confidence 4444444566666666666553221 11111344556666654
No 20
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=38.85 E-value=33 Score=23.35 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 006309 624 LVIGDLIAGSNYGPTDNY 641 (651)
Q Consensus 624 lIlGPLIl~ll~~L~~iy 641 (651)
.|++|+++++.+.+++.|
T Consensus 3 ~iIaPi~VGvvl~l~~~w 20 (21)
T PF13955_consen 3 TIIAPIVVGVVLTLFDHW 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHhh
Confidence 479999999999888765
No 21
>COG3859 Predicted membrane protein [Function unknown]
Probab=36.41 E-value=1.2e+02 Score=30.78 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=26.9
Q ss_pred HHHHHHHHhhccc------chhhHHHHHHHHHHHHhcchh
Q 006309 541 STTLAFISALFPI------FPFWFATIPAAVQLLLESRYI 574 (651)
Q Consensus 541 lg~LaailslIPi------~Gt~iV~IPaal~Ll~qG~~~ 574 (651)
.+.+++++|++|+ ...-++++|..+..+-.|...
T Consensus 16 maAlA~vLSfi~~~~~~~ggSvslgmIPi~liafRrG~ka 55 (185)
T COG3859 16 MAALAMVLSFIPIYDLPQGGSVSLGMIPILLIAFRRGLKA 55 (185)
T ss_pred HHHHHHHHHHcccccccCCCceehHHHHHHHHHHHhhhHH
Confidence 4567999999996 345578999999998888764
No 22
>COG2839 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.00 E-value=2.3e+02 Score=28.25 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=47.9
Q ss_pred HHHHhhcccchh-hHHHHHHHHHHH-HhcchhHHHHHHHHH-----HhhhhccccccccCCCCCC---hHHHHHHHHHhh
Q 006309 545 AFISALFPIFPF-WFATIPAAVQLL-LESRYIVAISLSVIH-----LVLLDYGTCEIQEDIPGYS---PYLTGLSIIGGM 614 (651)
Q Consensus 545 aailslIPi~Gt-~iV~IPaal~Ll-~qG~~~~AI~L~i~~-----~l~~~~idn~I~~~i~GiH---P~Lt~LsIiGGl 614 (651)
.++..+.|.++. -+.|.-..+|.+ .|... ..+...+.. .+..+++.|..--+.-|.+ -+-...+.+.|.
T Consensus 16 g~vGlv~PaiPs~lli~~G~l~y~~gf~~~~-s~~f~~v~~lvtlli~~aD~vA~~~g~kr~GgsK~a~~gAliG~iiG~ 94 (160)
T COG2839 16 GFVGLVYPAIPSTLLIFAGFLAYGFGFQIYL-SGVFWLVMALVTLLIIAADYVANIWGVKRYGGSKAAVWGALIGLIIGI 94 (160)
T ss_pred HHHhhhhcccchHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHhh
Confidence 334445566644 444554555554 34322 222222222 1223455554433333332 233456777777
Q ss_pred ccccccccchhhHHHHHHHHHHHHH
Q 006309 615 TLFPSALELLVIGDLIAGSNYGPTD 639 (651)
Q Consensus 615 ~~F~~Gl~GlIlGPLIl~ll~~L~~ 639 (651)
.. +.+..|.|+||.+.++.-.+..
T Consensus 95 Fi-~lP~~gii~gPfiga~v~ElI~ 118 (160)
T COG2839 95 FI-SLPPFGIILGPFIGAFVGELIE 118 (160)
T ss_pred ee-ecCccceehhhhHHHHHHHHHH
Confidence 54 2366789999999888665543
No 23
>COG4129 Predicted membrane protein [Function unknown]
Probab=34.15 E-value=1.9e+02 Score=31.88 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhccc------------chhhHHHHHHHHHHHHhc--chhHHHH
Q 006309 513 LATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFISALFPI------------FPFWFATIPAAVQLLLES--RYIVAIS 578 (651)
Q Consensus 513 ~g~l~iAl~qGilT~Igf~IfGvp~a~llg~LaailslIPi------------~Gt~iV~IPaal~Ll~qG--~~~~AI~ 578 (651)
.=++|+++..++..++.+ ++|.|++++.++ ++++++=|= .|..++.+-+.+....-| ++..|+.
T Consensus 11 ~RtlKt~ia~~La~~ia~-~l~~~~~~~A~i-~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~~~v~ 88 (332)
T COG4129 11 ARTLKTGLAAGLALLIAH-LLGLPQPAFAGI-SAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVV 88 (332)
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCCchHHHHH-HHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 336788999999999999 999999776654 666666553 477777777777665544 4433443
Q ss_pred H
Q 006309 579 L 579 (651)
Q Consensus 579 L 579 (651)
+
T Consensus 89 ~ 89 (332)
T COG4129 89 L 89 (332)
T ss_pred H
Confidence 3
No 24
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=33.94 E-value=6e+02 Score=26.95 Aligned_cols=27 Identities=0% Similarity=0.033 Sum_probs=20.4
Q ss_pred cchHHHHHHHHhhhHHHHHHHHHHHHH
Q 006309 240 FSSYFTRRILKRLETIVAIGLIVGMMV 266 (651)
Q Consensus 240 ~~~~~~~~L~~~ld~vvSi~lIl~liv 266 (651)
+.....+.++.+.|.+.|+++++++++
T Consensus 144 s~~l~a~~~~~~~D~~~s~~vl~~~~~ 170 (299)
T PRK09509 144 SQAVRADMLHYQSDVMMNGAILLALGL 170 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788888999999888777664
No 25
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.80 E-value=1.3e+02 Score=32.83 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=28.0
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 006309 70 QVRLALYIALAHAGLAFTLFILYFIFKLLQDYIRPIQWA 108 (651)
Q Consensus 70 ~~~~~~~~~m~h~gl~~~~~~l~~~~~ll~~~~r~~qwa 108 (651)
-.|-.=|++||-++- .+.|+.|.+++.|+-|+--.
T Consensus 80 ~~rwrdy~vmAvi~a----Gi~y~~y~~~K~YV~P~~l~ 114 (300)
T KOG2629|consen 80 LRRWRDYFVMAVILA----GIAYAAYRFVKSYVLPRFLG 114 (300)
T ss_pred hhhHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHhhC
Confidence 457888999886543 38899999999999998544
No 26
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=32.12 E-value=6.4e+02 Score=26.73 Aligned_cols=19 Identities=16% Similarity=-0.122 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhhhhHH
Q 006309 268 FLAGIIFFSYKIGVEGKDA 286 (651)
Q Consensus 268 ~l~~svFl~~qi~~E~~~a 286 (651)
.+.++-.+..+|....++.
T Consensus 94 aivIs~pl~l~iF~~eI~~ 112 (301)
T PF14362_consen 94 AIVISEPLELKIFEKEIDQ 112 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666777766664
No 27
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=30.72 E-value=1.2e+02 Score=30.59 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=27.0
Q ss_pred cccCCCCCChHHHH-HHHHHhhccccccccchhhHHHHHHHHHHHH
Q 006309 594 IQEDIPGYSPYLTG-LSIIGGMTLFPSALELLVIGDLIAGSNYGPT 638 (651)
Q Consensus 594 I~~~i~GiHP~Lt~-LsIiGGl~~F~~Gl~GlIlGPLIl~ll~~L~ 638 (651)
....|.|+.|+++. ++.++ . |..|.++||.+-..+.-+.
T Consensus 67 ~~~~I~GlDP~~~~g~~t~a----~--g~lG~L~GP~~G~~vf~l~ 106 (173)
T PF08566_consen 67 PTQQIMGLDPFMVYGLATLA----C--GALGWLVGPSLGNQVFRLL 106 (173)
T ss_pred ccccccCcCHHHHHHHHHHH----H--HHHHHHhcchHHHHHHHHH
Confidence 34567899998764 33332 2 6789999999988755544
No 28
>COG3827 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.44 E-value=32 Score=35.70 Aligned_cols=28 Identities=29% Similarity=0.762 Sum_probs=21.0
Q ss_pred chhhhhhcccCCcchhhhhHHHHHHHHHHHHHHhhh
Q 006309 302 RLGVKKWMEENDVPGMVDRYTTTFYETVSEQVDSLA 337 (651)
Q Consensus 302 ~pel~~WLpendv~~~vds~~~~~Y~~v~e~id~la 337 (651)
+|.||+||++| .+..|+. .|+|-|.+++
T Consensus 199 RPmLqdWLDkN-LPtLVEr-------LVrEEIeRv~ 226 (231)
T COG3827 199 RPMLQDWLDKN-LPTLVER-------LVREEIERVV 226 (231)
T ss_pred HHHHHHHHHcc-chHHHHH-------HHHHHHHHHH
Confidence 89999999888 7666633 4677777665
No 29
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=27.52 E-value=8.2e+02 Score=26.53 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHH
Q 006309 180 FSKLVRWLVSFAVFVI 195 (651)
Q Consensus 180 ~~~~~~wl~~~~~f~~ 195 (651)
|.+..|+++.....++
T Consensus 7 ~~~~~~~~~~~~~~~~ 22 (344)
T PRK12287 7 TLNGLKIVIMLGMLVI 22 (344)
T ss_pred CChHHHHHHHHHHHHH
Confidence 3344555555544333
No 30
>PLN03223 Polycystin cation channel protein; Provisional
Probab=26.64 E-value=1e+03 Score=31.59 Aligned_cols=61 Identities=8% Similarity=-0.043 Sum_probs=41.3
Q ss_pred HHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006309 486 VMGMLPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFI 547 (651)
Q Consensus 486 v~~llP~~~~~~~rl~~~i~~aI~gV~~g~l~iAl~qGilT~Igf~IfGvp~a~llg~Laai 547 (651)
+++++.... ....+...+.++...++.=.+...++.-.++.+|+.+||-...-+-++..++
T Consensus 1306 fLRLLRFNP-rL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ve~FSTf~sSL 1366 (1634)
T PLN03223 1306 ILKLMDFQP-RLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASVHFSDMTDSI 1366 (1634)
T ss_pred HHHHhccCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCHHHHH
Confidence 344444443 3455677788888887777777777778888899999998876555443333
No 31
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=26.52 E-value=1.4e+02 Score=32.90 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcchhH
Q 006309 496 ARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIV 575 (651)
Q Consensus 496 ~~~rl~~~i~~aI~gV~~g~l~iAl~qGilT~Igf~IfGvp~a~llg~LaailslIPi~Gt~iV~IPaal~Ll~qG~~~~ 575 (651)
.|--..|.+...+.|.+-+.-.++..+..-..-.-....-.-.+..+++..++++.|.+++.+..+|..+. .
T Consensus 270 ~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~--------g 341 (389)
T PF00860_consen 270 RRGLLADGLGTILAGLFGTSPTTTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVI--------G 341 (389)
T ss_dssp HHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHH--------H
T ss_pred cccceeeeeeeeechhhcCCCCccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHh--------c
Confidence 34446888888888877775544444433322111111123345667888999999999999999998763 3
Q ss_pred HHHHHHHHHhhhhccccccccCCC-CCChHHHHHHHHHhhc
Q 006309 576 AISLSVIHLVLLDYGTCEIQEDIP-GYSPYLTGLSIIGGMT 615 (651)
Q Consensus 576 AI~L~i~~~l~~~~idn~I~~~i~-GiHP~Lt~LsIiGGl~ 615 (651)
|..+.+++.+...-++..-..+.- ..+-+++++++..|+.
T Consensus 342 g~~lv~~g~i~~~gi~~i~~~~~~~~r~~~iv~~~l~~g~~ 382 (389)
T PF00860_consen 342 GPLLVLFGMIMMSGIRNIDWVDLDSARNAFIVGLSLPLGLS 382 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhHhheecccCccccHHHHHHhHHHHHH
Confidence 555666665554444443334443 2466777888877763
No 32
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.32 E-value=8.3e+02 Score=25.89 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006309 501 VEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAF 546 (651)
Q Consensus 501 ~~~i~~aI~gV~~g~l~iAl~qGilT~Igf~IfGvp~a~llg~Laa 546 (651)
++.+.++|.+.+-++ .|.++++-|...|+||++..|.++.
T Consensus 180 v~~ly~~ia~~ik~s------e~~~~~lwyi~Y~vPY~~~ig~~i~ 219 (230)
T PF03904_consen 180 VDHLYKAIASKIKAS------ESFWTYLWYIAYLVPYIFAIGLFIY 219 (230)
T ss_pred HHHHHHHHHHHHhhh------HhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555544443 5677778888899999996665443
No 33
>PRK10720 uracil transporter; Provisional
Probab=25.22 E-value=1.8e+02 Score=32.78 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh--HH-HHHHHHHHhhcccchhhHHHHHHHHHHHHhcch
Q 006309 497 RIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIHFL--YM-STTLAFISALFPIFPFWFATIPAAVQLLLESRY 573 (651)
Q Consensus 497 ~~rl~~~i~~aI~gV~~g~l~iAl~qGilT~Igf~IfGvp~a--~l-lg~LaailslIPi~Gt~iV~IPaal~Ll~qG~~ 573 (651)
+.-..+.+-..+.|.+-+.-.++..+-.- .+ ..-|+... +. .+++..+++++|-+++.+..+|..+.
T Consensus 264 r~l~adGlatii~glfG~~p~tty~en~g-~i--a~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVl------- 333 (428)
T PRK10720 264 RSMFANGLSTVISGFFGSTPNTTYGENIG-VM--AITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVM------- 333 (428)
T ss_pred chHhhhhHHHHHHHhcCCCCccccccccc-ee--eecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-------
Confidence 34456777777777666655444322211 11 12233333 34 67888899999999999999998876
Q ss_pred hHHHHHHHHHHhhhhccccccccCC--C-CCChHHHHHHHHHhhccccc-----cccchhhHHHHHHHHHHHHHhhhccc
Q 006309 574 IVAISLSVIHLVLLDYGTCEIQEDI--P-GYSPYLTGLSIIGGMTLFPS-----ALELLVIGDLIAGSNYGPTDNYSCHC 645 (651)
Q Consensus 574 ~~AI~L~i~~~l~~~~idn~I~~~i--~-GiHP~Lt~LsIiGGl~~F~~-----Gl~GlIlGPLIl~ll~~L~~iy~~~~ 645 (651)
.|+.+.+++.+...-++.....+. . .-+-+++++++..|+-.... =..|+..|-+...++-.+++.|++.-
T Consensus 334 -gg~~i~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~ 412 (428)
T PRK10720 334 -GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISKLR 412 (428)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccc
Confidence 355556666554333333322111 1 12335566665555421100 01455555555555555666665554
Q ss_pred cccc
Q 006309 646 TKGF 649 (651)
Q Consensus 646 ~~~~ 649 (651)
-+|+
T Consensus 413 ~~~~ 416 (428)
T PRK10720 413 PEEE 416 (428)
T ss_pred CCcc
Confidence 4444
No 34
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=24.72 E-value=3.1e+02 Score=23.90 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=44.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccccc-cccccchhhhhhcccC
Q 006309 248 ILKRLETIVAIGLIVGMMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEE-SNYAERLGVKKWMEEN 312 (651)
Q Consensus 248 L~~~ld~vvSi~lIl~liv~~l~~svFl~~qi~~E~~~avi~l~s~v~n-~t~~~~pel~~WLpen 312 (651)
-++.+..+..++.++++++|...-.+..++-++.=|. + +.+---+=| .-|..||. +|+|..
T Consensus 9 ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~-~-~~~lv~vP~Wp~y~r~p~--~W~~~~ 70 (76)
T PF06645_consen 9 AEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGV-V-LTLLVVVPPWPFYNRHPL--KWLPPK 70 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHhheeCCcHhhcCCcc--cCCCCC
Confidence 4455667888888999999999999999999998887 2 344444444 34555665 799876
No 35
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=24.18 E-value=2.3e+02 Score=28.31 Aligned_cols=7 Identities=29% Similarity=0.525 Sum_probs=5.1
Q ss_pred ccchhhh
Q 006309 131 QLGLTET 137 (651)
Q Consensus 131 ~~g~~~~ 137 (651)
|+|++.+
T Consensus 128 kYgvl~~ 134 (163)
T PF06679_consen 128 KYGVLTT 134 (163)
T ss_pred eecccCC
Confidence 7787765
No 36
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=24.00 E-value=9.3e+02 Score=25.99 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=29.5
Q ss_pred CcCCCCcchHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006309 234 SFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVFLA 270 (651)
Q Consensus 234 ~~~~~~~~~~~~~~L~~~ld~vvSi~lIl~liv~~l~ 270 (651)
-.+..++.....|..+++-|.++|++.+++++ +..+
T Consensus 140 ~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~~ 175 (304)
T COG0053 140 VGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSLL 175 (304)
T ss_pred HHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH-HHHh
Confidence 34566677899999999999999999999998 4443
No 37
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=21.77 E-value=49 Score=29.59 Aligned_cols=35 Identities=26% Similarity=0.482 Sum_probs=26.4
Q ss_pred cccccchhhhhhcccC--Ccch-hhhhHHHHHHHHHHH
Q 006309 297 SNYAERLGVKKWMEEN--DVPG-MVDRYTTTFYETVSE 331 (651)
Q Consensus 297 ~t~~~~pel~~WLpen--dv~~-~vds~~~~~Y~~v~e 331 (651)
+.+-++|++++++.+| ++.+ ++++-..+.||++.|
T Consensus 26 ~~vl~dp~V~~Fl~~h~~eLt~~~i~rsl~kLyEy~~e 63 (94)
T PF07319_consen 26 QEVLSDPEVQAFLQEHQPELTQEMIERSLSKLYEYVSE 63 (94)
T ss_dssp HHHTT-HHHHHHHHHSTTT--HHHHHHTHHHHHHHHHS
T ss_pred HHHHcCHHHHHHHHHhHHhcCHHHHHHHHHHHHHHHHH
Confidence 3456789999999999 5655 788888999999877
No 38
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=20.91 E-value=83 Score=25.57 Aligned_cols=16 Identities=56% Similarity=1.147 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 006309 185 RWLVSFAVFVIAYETI 200 (651)
Q Consensus 185 ~wl~~~~~f~~~~~~~ 200 (651)
-|++-|++|+++|+.+
T Consensus 6 ~wlvvfav~~flfd~l 21 (53)
T PF10831_consen 6 WWLVVFAVFVFLFDTL 21 (53)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3999999999999864
No 39
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=20.79 E-value=4e+02 Score=26.37 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=23.0
Q ss_pred HHHhhccccccccchhhHHHHHHHHHHHHHhhhcc
Q 006309 610 IIGGMTLFPSALELLVIGDLIAGSNYGPTDNYSCH 644 (651)
Q Consensus 610 IiGGl~~F~~Gl~GlIlGPLIl~ll~~L~~iy~~~ 644 (651)
++||+ +.|++.|++...+..-+.+-|+.+
T Consensus 110 ~~Gg~------l~Gli~~~~~Y~ls~~lI~~Yr~~ 138 (154)
T TIGR03546 110 VMGSF------VVGLILLPPAFAISKVIIAKYRKR 138 (154)
T ss_pred HHhhH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666 378999998888888888888765
No 40
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=20.72 E-value=3.6e+02 Score=26.48 Aligned_cols=11 Identities=18% Similarity=0.899 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 006309 89 FILYFIFKLLQ 99 (651)
Q Consensus 89 ~~l~~~~~ll~ 99 (651)
.++|++|+|++
T Consensus 93 I~~f~lY~l~K 103 (152)
T PF15361_consen 93 IVLFILYTLFK 103 (152)
T ss_pred HHHHHHHHHHH
Confidence 44555555554
No 41
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.53 E-value=1.1e+03 Score=26.46 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=36.3
Q ss_pred HHHHhhcccccccccccccccccCcCCCCcchHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006309 211 LGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVV 267 (651)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ld~vvSi~lIl~liv~ 267 (651)
.||+++++..+++++++.+...+ +|.|+. +.+.+.+++-++ ++.++.++.+++-
T Consensus 114 ~G~~fs~k~l~pk~~rlNPi~Gl-KriFS~-~~l~el~KsllK-~~~i~~i~~~~~~ 167 (358)
T PRK13109 114 NLPRFVLDRIQPKWSRISPMKGW-TRIFGT-SGQVEFLKSLFK-FLSVSVVVLLLLR 167 (358)
T ss_pred hCceeccccCCCChhhcCHHHHH-HHhcCH-HHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 58999999999999999998777 445644 344455555554 4445555555543
Done!