Query 006309
Match_columns 651
No_of_seqs 155 out of 816
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 21:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3um7_A Potassium channel subfa 36.3 16 0.00055 38.1 2.5 18 83-100 30-47 (309)
2 2k7r_A Primosomal protein DNAI 30.8 18 0.0006 31.7 1.5 35 297-331 26-63 (106)
3 2kv5_A FST, putative uncharact 29.8 32 0.0011 24.8 2.4 22 623-644 6-27 (33)
4 3qe7_A Uracil permease; uracil 20.8 84 0.0029 33.9 4.7 130 496-638 264-406 (429)
5 3ee4_A Probable ribonucleoside 19.7 1.8E+02 0.006 30.2 6.8 38 272-312 100-137 (323)
6 3rlb_A THIT; S-component, ECF 14.9 2.3E+02 0.0079 27.4 5.8 26 558-583 49-74 (192)
7 3ueb_A Putative uncharacterize 13.5 1.2E+02 0.0041 26.7 3.0 28 312-339 78-105 (110)
8 2z84_A UFSP1, UFM1-specific pr 13.2 57 0.002 32.6 1.0 66 112-191 66-133 (218)
9 2oar_A Large-conductance mecha 11.8 2.6E+02 0.0089 27.0 5.1 52 457-510 95-146 (174)
10 3tx3_A Uncharacterized protein 11.1 4E+02 0.014 26.6 6.5 41 602-643 204-245 (249)
No 1
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=36.27 E-value=16 Score=38.10 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006309 83 GLAFTLFILYFIFKLLQD 100 (651)
Q Consensus 83 gl~~~~~~l~~~~~ll~~ 100 (651)
...++++++|+.|+++-.
T Consensus 30 ~~~l~Ll~~~~~YL~~GA 47 (309)
T 3um7_A 30 TTLLALLALVLLYLVSGA 47 (309)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556778888999987643
No 2
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=30.77 E-value=18 Score=31.70 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=28.9
Q ss_pred cccccchhhhhhcccC--Ccch-hhhhHHHHHHHHHHH
Q 006309 297 SNYAERLGVKKWMEEN--DVPG-MVDRYTTTFYETVSE 331 (651)
Q Consensus 297 ~t~~~~pel~~WLpen--dv~~-~vds~~~~~Y~~v~e 331 (651)
+.+.++|++++++.++ ++.+ +|++-..+.||++.|
T Consensus 26 ~~vl~dP~V~~Fl~~h~~~l~~~~I~~s~~kL~ey~~e 63 (106)
T 2k7r_A 26 EKVMKDQDVQAFLKENEEVIDQKMIEKSLNKLYEYIEQ 63 (106)
T ss_dssp HHHTTCHHHHHHHHHSTTTCCHHHHHHTHHHHHHHHHS
T ss_pred HHHHcCHHHHHHHHHChhhCCHHHHHhhHHHHHHHHHH
Confidence 4556889999999998 5665 888888999999876
No 3
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=29.78 E-value=32 Score=24.79 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.0
Q ss_pred chhhHHHHHHHHHHHHHhhhcc
Q 006309 623 LLVIGDLIAGSNYGPTDNYSCH 644 (651)
Q Consensus 623 GlIlGPLIl~ll~~L~~iy~~~ 644 (651)
-.|+||+++++.+.+++.|-.+
T Consensus 6 ~~IIaPivVGvvl~L~d~WLn~ 27 (33)
T 2kv5_A 6 SLVIAPIFVGLVLEMISRVLDE 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 4689999999999999988654
No 4
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=20.79 E-value=84 Score=33.89 Aligned_cols=130 Identities=13% Similarity=0.090 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--h-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcc
Q 006309 496 ARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIH--F-LYMSTTLAFISALFPIFPFWFATIPAAVQLLLESR 572 (651)
Q Consensus 496 ~~~rl~~~i~~aI~gV~~g~l~iAl~qGilT~Igf~IfGvp--~-a~llg~LaailslIPi~Gt~iV~IPaal~Ll~qG~ 572 (651)
.|.-..+.+-..+.|.+-+.-.++..+-. ..+. .-|+. + ....+++..+++++|-+|+.+..+|..+.
T Consensus 264 ~r~l~adGla~i~~glfGg~p~Tt~~en~-g~i~--~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vl------ 334 (429)
T 3qe7_A 264 HRSMFANGLSTVISGFFGSTPNTTYGENI-GVMA--ITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVM------ 334 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEECHHHH-HHHH--HHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHH------
T ss_pred chHHHHHHHHHHHHHhcCCCCcchHHHhH-HHHH--hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH------
Confidence 44556777777777777664433322211 1111 22333 2 23445666778889999999999998776
Q ss_pred hhHHHHHHHHHHhhhhccccccccCCC--C-CChHHHHHHHHHhhc-------cccccccchhhHHHHHHHHHHHH
Q 006309 573 YIVAISLSVIHLVLLDYGTCEIQEDIP--G-YSPYLTGLSIIGGMT-------LFPSALELLVIGDLIAGSNYGPT 638 (651)
Q Consensus 573 ~~~AI~L~i~~~l~~~~idn~I~~~i~--G-iHP~Lt~LsIiGGl~-------~F~~Gl~GlIlGPLIl~ll~~L~ 638 (651)
.|+.+++++.+...-++..+..+.. . -+-+++++++..|+- -+ ...|+.+|-+...++-.++
T Consensus 335 --gg~~l~lfg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~~~~~~~--~~~gi~~~~~~ai~ln~~l 406 (429)
T 3qe7_A 335 --GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAA--ELKGMALATIVGIGLSLIF 406 (429)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCCCCSSSC--CCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHhhhhh--ccCcHHHHHHHHHHHHHHh
Confidence 3455556655544333332222221 1 245677777776652 12 3456666666655544444
No 5
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=19.74 E-value=1.8e+02 Score=30.21 Aligned_cols=38 Identities=5% Similarity=0.049 Sum_probs=28.9
Q ss_pred HHHHHHHhhhhhhHHHHhhhccccccccccchhhhhhcccC
Q 006309 272 IIFFSYKIGVEGKDAVISIKSHVEESNYAERLGVKKWMEEN 312 (651)
Q Consensus 272 svFl~~qi~~E~~~avi~l~s~v~n~t~~~~pel~~WLpen 312 (651)
-.|++.|+..|++|+ +..++++ +|+..++++-+|..++
T Consensus 100 ~~~l~~q~~~EaiHs--~sYs~il-~tl~~~~~~f~~~~~~ 137 (323)
T 3ee4_A 100 EMYLTQFAFEEAKHT--QVFRMWL-DAVGISEDLHRYLDDL 137 (323)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHH-HHHTCCSCCGGGGTTC
T ss_pred HHHHHHHHHHHHHHH--HHHHHHH-HHhCCCHHHHHHHHcC
Confidence 369999999999995 8888877 4445566777787654
No 6
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=14.88 E-value=2.3e+02 Score=27.40 Aligned_cols=26 Identities=15% Similarity=0.011 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHH
Q 006309 558 FATIPAAVQLLLESRYIVAISLSVIH 583 (651)
Q Consensus 558 iV~IPaal~Ll~qG~~~~AI~L~i~~ 583 (651)
+..+|..+..+..|+....+.-++++
T Consensus 49 ~~~iPiii~a~~~Gp~~G~~~g~i~g 74 (192)
T 3rlb_A 49 IACIPILLLSLRRGLTAGLVGGLIWG 74 (192)
T ss_dssp GGGHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 45788888888888874333333333
No 7
>3ueb_A Putative uncharacterized protein; alpha and beta protein (A+B), unknown function; 1.98A {Thermococcus onnurineus}
Probab=13.51 E-value=1.2e+02 Score=26.72 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=24.4
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHhhhhh
Q 006309 312 NDVPGMVDRYTTTFYETVSEQVDSLAMQ 339 (651)
Q Consensus 312 ndv~~~vds~~~~~Y~~v~e~id~la~q 339 (651)
-|+++.+|.+++++|+.+-+..+.+|.+
T Consensus 78 VDVe~lideA~e~AYe~VE~~Lreia~~ 105 (110)
T 3ueb_A 78 VDVDKLIDEAVERAYEIVERKLREIANE 105 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3788899999999999999988888854
No 8
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=13.20 E-value=57 Score=32.56 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=35.4
Q ss_pred hcc-hhhHHHHHHHhcccccccchhhhhhhchhhhhhhhcchhhhhHHHHHHHHHhhcc-CCCCCCCCchhhHHHHHHHH
Q 006309 112 SIP-LRGIQQALVAFWSEPLQLGLTETVLAVPVAIFKVFVGTLVDIKEVFFKVFLKKLK-NNGPRHSRSGFSKLVRWLVS 189 (651)
Q Consensus 112 s~~-lr~~q~~lv~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wl~~ 189 (651)
.+| .|++|+.|++.|..| .++.-| |--+||.| +.+ +|+.++.=+- ---.+ ..+.++++.+|+..
T Consensus 66 ~iPsi~~IQ~~Le~awdkg--~~~~GS---------rkWIGt~E-~~~-~l~sllgI~cki~~~~-~g~~~~~~~~~l~~ 131 (218)
T 2z84_A 66 GVPGLPALQGALEAMGDKP--PGFRGS---------RNWIGCVE-ASL-CLEHFGGPQGRLCHLP-RGVGLRGEEERLYS 131 (218)
T ss_dssp TCCCHHHHHHHHHHTTSSC--TTCTTC---------CCCCCHHH-HHH-HHHHTTCSEEEEEEEC-SCSTTTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHccccC--Cccccc---------cceechHH-HHH-HHHhhcCCceEEEEcc-CchhHHHHHHHHHH
Confidence 455 799999999999987 222221 33344433 222 2333221110 00011 22457889999998
Q ss_pred HH
Q 006309 190 FA 191 (651)
Q Consensus 190 ~~ 191 (651)
+|
T Consensus 132 hF 133 (218)
T 2z84_A 132 HF 133 (218)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 9
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=11.83 E-value=2.6e+02 Score=27.00 Aligned_cols=52 Identities=8% Similarity=0.283 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHhhCCCCchHHHHHHHHHHHHHHH
Q 006309 457 VFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKPARIRCVEVIDNAISG 510 (651)
Q Consensus 457 v~nfli~liIfl~~LFYLLsd~~~~l~~~v~~llP~~~~~~~rl~~~i~~aI~g 510 (651)
+++.++.++|.-+++||++.....++.+. .--|........++.++++.++.
T Consensus 95 Fi~avInFlIIA~vIYFliVk~iNklk~~--~e~~~~~~~e~~LL~EIRDlLk~ 146 (174)
T 2oar_A 95 LLSAAINFFLIAFAVYFLVVLPYNTLRKK--GEVEQPGDTQVVLLTEIRDLLAQ 146 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCChHHHHHHHHHHHHh
Confidence 34445555555556766665522333222 10011111235688888888764
No 10
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=11.13 E-value=4e+02 Score=26.57 Aligned_cols=41 Identities=17% Similarity=0.082 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHhhccccccccchhhHHHHHHHHHHH-HHhhhc
Q 006309 602 SPYLTGLSIIGGMTLFPSALELLVIGDLIAGSNYGP-TDNYSC 643 (651)
Q Consensus 602 HP~Lt~LsIiGGl~~F~~Gl~GlIlGPLIl~ll~~L-~~iy~~ 643 (651)
.+...+++...-+... -=+.++++-|..+|....+ .+.|++
T Consensus 204 r~~~~~fG~~~~ll~~-IP~vnl~~~p~av~gat~lw~~~~~~ 245 (249)
T 3tx3_A 204 RSKTLGFGFGVTVLTM-IPLINLIIMPLAVCGATSLWVDHYRR 245 (249)
T ss_dssp HHHHHHHHHHHHHHTT-STTGGGTHHHHHHHHHHHHHHHHTHH
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455544333221 2568999999988776643 345544
Done!