Query 006309
Match_columns 651
No_of_seqs 155 out of 816
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 21:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006309.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006309hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 35.4 19 0.0014 22.9 3.4 22 260-281 1-22 (27)
2 d1s7ea2 a.35.1.7 (A:6-85) Hepa 16.1 30 0.0022 27.5 2.0 49 129-187 15-64 (80)
3 d2o4aa1 a.35.1.7 (A:370-452) D 8.9 63 0.0046 25.7 1.7 47 131-187 16-64 (83)
4 d2csfa1 a.35.1.7 (A:8-95) DNA- 7.4 81 0.0059 25.3 1.7 47 131-187 25-73 (88)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 6.0 1.8E+02 0.013 18.6 2.6 19 261-279 2-20 (32)
6 d2axte1 f.23.38.1 (E:3-84) Cyt 4.8 3E+02 0.022 21.4 3.7 32 507-538 19-50 (82)
7 d1mxra_ a.25.1.2 (A:) Ribonucl 4.8 3E+02 0.022 25.8 4.6 40 271-312 104-143 (339)
8 d1x40a1 a.60.1.2 (A:8-85) Cent 4.4 1.1E+02 0.0079 23.1 0.8 23 302-324 8-30 (78)
9 d1wh6a_ a.35.1.7 (A:) Homeobox 4.4 1.5E+02 0.011 24.2 1.6 48 130-187 31-80 (101)
10 d1ow5a_ a.60.1.2 (A:) Serine/t 4.3 57 0.0042 23.5 -1.0 22 303-324 1-22 (60)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=35.44 E-value=19 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 006309 260 LIVGMMVVFLAGIIFFSYKIGV 281 (651)
Q Consensus 260 lIl~liv~~l~~svFl~~qi~~ 281 (651)
+.+++++.++.+..|.+||-|-
T Consensus 1 ivlgli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 1 LVLGLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeeeehHHHHHHHHHHHHHHhc
Confidence 4689999999999999999764
No 2
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.11 E-value=30 Score=27.46 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=32.3
Q ss_pred ccccchhhhhhhchhhhhhhhcchhhhhHHHHHHHHHhhccCCCCCC-CCchhhHHHHHH
Q 006309 129 PLQLGLTETVLAVPVAIFKVFVGTLVDIKEVFFKVFLKKLKNNGPRH-SRSGFSKLVRWL 187 (651)
Q Consensus 129 ~l~~g~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~wl 187 (651)
-.+.++.++++|.= |+.-+-||+-| +||||+|-..-+ +|.-|-|.-.||
T Consensus 15 L~~~~IsQ~~Fa~~--vL~rsQGtlSd--------LL~kPKPW~~l~~gre~y~RM~~wL 64 (80)
T d1s7ea2 15 LKRYSIPQAIFAQR--VLCRSQGTLSD--------LLRNPKPWSKLKSGRETFRRMWKWL 64 (80)
T ss_dssp HTSSCCCHHHHHHH--TSSSCSSHHHH--------HTTSCCTTCCCSSCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHH--HHccChHHHHH--------HHcCCCChhhhcchhHHHHHHHHHH
Confidence 34567777777665 23333455544 899999854433 788888888887
No 3
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.85 E-value=63 Score=25.71 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=28.7
Q ss_pred ccchhhhhhhchhhhhhhhcchhhhhHHHHHHHHHhhccCCCCCC--CCchhhHHHHHH
Q 006309 131 QLGLTETVLAVPVAIFKVFVGTLVDIKEVFFKVFLKKLKNNGPRH--SRSGFSKLVRWL 187 (651)
Q Consensus 131 ~~g~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~wl 187 (651)
+.++.+.++|.=+ +.-+-||+- ++||+|+|-.+.. +++-|-|+-.||
T Consensus 16 ~~~IsQ~~Fak~v--L~rSQgtlS--------dLL~~pkpw~~ls~sgre~f~Rm~~wL 64 (83)
T d2o4aa1 16 RAGISQAVFARVA--FNRTQGLLS--------EILRKEEDPKTASQSLLVNLRAMQNFL 64 (83)
T ss_dssp HHTCCHHHHHHHH--HSCCHHHHH--------HHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH--HccCcHHHH--------HHHcCCCCchhhhHHHHHHHHHHHHHH
Confidence 3566666666542 222234433 4899998865542 777788888885
No 4
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.36 E-value=81 Score=25.29 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=26.8
Q ss_pred ccchhhhhhhchhhhhhhhcchhhhhHHHHHHHHHhhccCCCCCC--CCchhhHHHHHH
Q 006309 131 QLGLTETVLAVPVAIFKVFVGTLVDIKEVFFKVFLKKLKNNGPRH--SRSGFSKLVRWL 187 (651)
Q Consensus 131 ~~g~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~wl 187 (651)
+.++.+.++|.=+. .-+-|| +.++||+|+|-.+.+ ++.-|.|.-+||
T Consensus 25 ~~~IsQ~~Fak~vL--~rSQGt--------lSdLLrkpkp~~~~~~sg~e~~~rm~~wL 73 (88)
T d2csfa1 25 RAKVSQALFAKVAA--NKSQGW--------LCELLRWKENPSPENRTLWENLCTIRRFL 73 (88)
T ss_dssp HHTCCHHHHHHHHT--CCCHHH--------HHHHHHHCCCCCTTCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHH--ccCcHH--------HHHHHcCCCCcchhhHHHHHHHHHHHHHH
Confidence 35566665555422 222233 344899988854442 566677777775
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.02 E-value=1.8e+02 Score=18.56 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006309 261 IVGMMVVFLAGIIFFSYKI 279 (651)
Q Consensus 261 Il~liv~~l~~svFl~~qi 279 (651)
|++-++-.+|+.+|++..+
T Consensus 2 ilgavfyivfialffgiav 20 (32)
T d2e74e1 2 ILGAVFYIVFIALFFGIAV 20 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHHHh
Confidence 3444444555555555544
No 6
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.83 E-value=3e+02 Score=21.43 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Q 006309 507 AISGVLLATVEIAFFQGCLTWLLFRFFKIHFL 538 (651)
Q Consensus 507 aI~gV~~g~l~iAl~qGilT~Igf~IfGvp~a 538 (651)
.|.++-.-.+.+|....+.|++.|-+||-|-+
T Consensus 19 vIHsiTIPslFiaGwlFVstGLAYdvFGtPrP 50 (82)
T d2axte1 19 VIHSITIPALFIAGWLFVSTGLAYDVFGTPRP 50 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHTTCCCT
T ss_pred EEEeecccHHHHhhhhheecccchhhcCCCCc
Confidence 35666666778899999999999999999865
No 7
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]}
Probab=4.79 E-value=3e+02 Score=25.75 Aligned_cols=40 Identities=10% Similarity=-0.141 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhhhHHHHhhhccccccccccchhhhhhcccC
Q 006309 271 GIIFFSYKIGVEGKDAVISIKSHVEESNYAERLGVKKWMEEN 312 (651)
Q Consensus 271 ~svFl~~qi~~E~~~avi~l~s~v~n~t~~~~pel~~WLpen 312 (651)
+-.+++.|...|++|+ +..+++.++-..+.-+..+|..++
T Consensus 104 ~~~~~~~q~~~E~iH~--~sYs~il~~l~~d~~~~~~~~~~~ 143 (339)
T d1mxra_ 104 LETWVETWAFSETIHS--RSYTHIIRNIVNDPSVVFDDIVTN 143 (339)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHTTCSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhcchHHHHHHHHhc
Confidence 3578888999999995 888888765554433444454444
No 8
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}
Probab=4.44 E-value=1.1e+02 Score=23.08 Aligned_cols=23 Identities=4% Similarity=0.258 Sum_probs=14.3
Q ss_pred chhhhhhcccCCcchhhhhHHHH
Q 006309 302 RLGVKKWMEENDVPGMVDRYTTT 324 (651)
Q Consensus 302 ~pel~~WLpendv~~~vds~~~~ 324 (651)
++++.+||..-.++++.++-.++
T Consensus 8 ~~dV~~WL~~lgL~~Y~~~F~~~ 30 (78)
T d1x40a1 8 NVDIKDFLMSINLEQYLLHFHES 30 (78)
T ss_dssp CCBHHHHHHTTTCGGGHHHHHHH
T ss_pred ChhHHHHHHHCchHHHHHHHHHc
Confidence 55788999877665555444333
No 9
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.36 E-value=1.5e+02 Score=24.18 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=29.7
Q ss_pred cccchhhhhhhchhhhhhhhcchhhhhHHHHHHHHHhhccCCCCCC--CCchhhHHHHHH
Q 006309 130 LQLGLTETVLAVPVAIFKVFVGTLVDIKEVFFKVFLKKLKNNGPRH--SRSGFSKLVRWL 187 (651)
Q Consensus 130 l~~g~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~wl 187 (651)
.+.++...++|.= |+.-+-||+ .++||||+|=.+-. +|.-|-|.-.||
T Consensus 31 ~~~~IsQ~~Fa~~--VL~rSQGtl--------SdLL~~PKPW~kl~~~gr~~y~RM~~wL 80 (101)
T d1wh6a_ 31 AKNGICQRIFGEK--VLGLSQGSV--------SDMLSRPKPWSKLTQKGREPFIRMQLWL 80 (101)
T ss_dssp HTTTCCHHHHHHH--TTCCCHHHH--------HHHHHSCCCTTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHH--HHccChHHH--------HHHHhCCCCHHHHhHhhhHHHHHHHHHh
Confidence 3466666666654 222223333 34899999955442 677888888886
No 10
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.26 E-value=57 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=14.1
Q ss_pred hhhhhhcccCCcchhhhhHHHH
Q 006309 303 LGVKKWMEENDVPGMVDRYTTT 324 (651)
Q Consensus 303 pel~~WLpendv~~~vds~~~~ 324 (651)
|.+.+||.+-..+++.+.-.++
T Consensus 1 p~V~~wL~~lgL~~Y~~~F~~~ 22 (60)
T d1ow5a_ 1 PFVQLFLEEIGCTQYLDSFIQC 22 (60)
T ss_dssp CHHHHHHHHHSCTHHHHHHHHH
T ss_pred CcHHHHHHHCcCHHHHHHHHHc
Confidence 6678899877665555444443
Done!