BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006310
(651 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 6 KYAHSPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDESLAAELQADA---------- 55
K ++P+HLA AR + + ++ L +VN +D+ L A
Sbjct: 33 KDGYTPLHLA-AREGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 56 ---VSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTR 112
A ++ +D G TPLHLA R E+L+ AGAD + Q++ G + A+
Sbjct: 87 LLKAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNG 145
Query: 113 EESIAMIIAR 122
E IA ++ +
Sbjct: 146 NEDIAEVLQK 155
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 6 KYAHSPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDESLAAELQADA---------- 55
K ++P+HLA AR + + ++ L +VN +D+ L A
Sbjct: 45 KDGYTPLHLA-AREGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 56 ---VSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTR 112
A ++ +D G TPLHLA R E+L+ AGAD + Q++ G +A ++
Sbjct: 99 LLKAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNG 157
Query: 113 EESIAMII 120
E +A I+
Sbjct: 158 NEDLAEIL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 10 SPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDESLAAELQADA-------------V 56
+P+HLA AR + + +++ L +VN +D++ L A
Sbjct: 4 TPLHLA-ARNGHLEVVKLL-----LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 57 SAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEA 108
A ++ +D GR TPLHLA R ++L+ AGAD + +++NG + L A
Sbjct: 58 GADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 6 KYAHSPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDESLAAELQADA---------- 55
K ++P+HLA AR + + ++ L +VN +D+ L A
Sbjct: 33 KDGYTPLHLA-AREGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 56 ---VSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTR 112
A ++ +D G TPLHLA R E+L+ AGAD + Q++ G + A+
Sbjct: 87 LLKAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREG 145
Query: 113 EESIAMIIAR 122
E IA ++ +
Sbjct: 146 HEDIAEVLQK 155
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 58 AVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIA 117
A ++ RD+ GR TPLHLA + E+L+ GAD + Q++ G +A ++ E +A
Sbjct: 71 ADVNARDIWGR-TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 118 MIIAR 122
I+ +
Sbjct: 130 EILQK 134
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 47 LAAELQADAVSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQ 106
L AE AD +D RD+ G T LH+A P E L+ GAD +++E G +AL+
Sbjct: 95 LLAEAGAD-----LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 149
Query: 107 EA 108
A
Sbjct: 150 LA 151
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEA 108
TPLHLA + P E+L+ GAD + ++ +GW+ L A
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 47 LAAELQADAVSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQ 106
L AE AD +D RD+ G T LH+A P E L+ GAD +++E G +AL+
Sbjct: 94 LLAEAGAD-----LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 148
Query: 107 EA 108
A
Sbjct: 149 LA 150
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 68 RETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEA 108
++TPLHLAV P AE L+ AG D L++ G + L A
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 82
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 67 GRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQ 106
GR T LHLAV L++P +L+ GAD + G+S Q
Sbjct: 148 GR-TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 186
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 68 RETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAV 109
++TPLHLAV P AE L+ AG D L++ G + L A
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 55 AVSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQ 106
++ A ++ ++ T LHLAV L++P +L+ GAD + G+S Q
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 189
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 35 SKAGEVNTEDESLAAELQADAVSAVIDRRDVPGRE-TPLHLAVRLRDPISAEILMAAGAD 93
+KAG+V T + + ++ RD+ GR+ TPLH A E L+ GAD
Sbjct: 18 AKAGDVETVKKLCTVQ--------SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 69
Query: 94 WSLQNENGWSALQEAVCTREESIAMIIARH 123
+++ G L A +A ++ +H
Sbjct: 70 VHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 35 SKAGEVNTEDESLAAELQADAVSAVIDRRDVPGRE-TPLHLAVRLRDPISAEILMAAGAD 93
+KAG+V T + + ++ RD+ GR+ TPLH A E L+ GAD
Sbjct: 20 AKAGDVETVKKLCTVQ--------SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 71
Query: 94 WSLQNENGWSALQEAVCTREESIAMIIARH 123
+++ G L A +A ++ +H
Sbjct: 72 VHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 35 SKAGEVNTEDESLAAELQADAVSAVIDRRDVPGRE-TPLHLAVRLRDPISAEILMAAGAD 93
+KAG+V T + + ++ RD+ GR+ TPLH A E L+ GAD
Sbjct: 16 AKAGDVETVKKLCTVQ--------SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 94 WSLQNENGWSALQEAVCTREESIAMIIARH 123
+++ G L A +A ++ +H
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 55 AVSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREE 114
A A ++ +D G TPLHLA R E+L+ AGAD + Q++ G +A ++ E
Sbjct: 23 ANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNE 81
Query: 115 SIAMIIAR 122
+A I+ +
Sbjct: 82 DLAEILQK 89
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 57 SAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESI 116
A ++ D+ GR TPLHLA + E+L+ GAD + Q++ G +A ++ E +
Sbjct: 70 GADVNASDIWGR-TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 117 AMIIAR 122
A I+ +
Sbjct: 129 AEILQK 134
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 58 AVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEA 108
A ++ +D GR TPLHLA R ++L+ AGAD + +++NG + L A
Sbjct: 26 ADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 75
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEA 108
TPLHLA R ++L+ AGAD + +++NG + L A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIAR 122
TPLHLA + AE+L+ GAD + Q++ G +A ++ E +A I+ +
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 10 SPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDE------SLAAELQADAVSAVIDRR 63
+P+HLA Y I+ L L +VN +D LAA+ V V+ +
Sbjct: 49 TPLHLAA----YFGHLEIVEVL--LKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 64 --DVPGRE----TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIA 117
DV + TPLHLA + E+L+ GAD + Q++ G +A ++ E +A
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 118 MIIAR 122
I+ +
Sbjct: 163 EILQK 167
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARH 123
TPLHLA E+L+ GAD + + NG++ L A I ++ +H
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 8 AHSPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDESLAAELQADAVSAVIDRRDVPG 67
H+P+H+AV +D +R L DA + + G
Sbjct: 158 GHTPLHVAVIHKDAEMVR-------------------------LLRDAGADLNKPEPTCG 192
Query: 68 RETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARHYQP 126
R TPLHLAV + E+L+ AGAD + + G + L A+ +A ++ H P
Sbjct: 193 R-TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 69 ETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMII 120
+T LHLA L + + E L AAGA + G +AL A R + A ++
Sbjct: 46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 8 AHSPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDESLAAELQADAVSAVIDRRDVPG 67
H+P+H+AV +D +R L DA + + G
Sbjct: 158 GHTPLHVAVIHKDAEMVR-------------------------LLRDAGADLNKPEPTCG 192
Query: 68 RETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARHYQP 126
R TPLHLAV + E+L+ AGAD + + G + L A+ +A ++ H P
Sbjct: 193 R-TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 69 ETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMII 120
+T LHLA L + + E L AAGA + G +AL A R + A ++
Sbjct: 46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARH 123
TPLHLA E+L+ GAD + + GW+ L A + + I ++ +H
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMII 120
TPLHLA E+L+ GAD + Q+ G +A ++ +E +A I+
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARHYQPL 127
TPL AVR E L+A GAD + + ++G++ + AV + +I H L
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 69 ETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEA 108
ET LH+A D S E L+ G+D ++++ GW+ L EA
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA 50
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 20/126 (15%)
Query: 10 SPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDESLAAELQADAV------------- 56
+P+HLA + I+ L L +VN D + L+ A+
Sbjct: 49 TPLHLAA----FNGHLEIVEVL--LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 57 SAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESI 116
A ++ D+ G TPLHLA E+L+ GAD + Q++ G +A ++ E +
Sbjct: 103 GADVNANDMEG-HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 117 AMIIAR 122
A I+ +
Sbjct: 162 AEILQK 167
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 63 RDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCT-REESIAMIIA 121
+++ E PLH A L D +IL+ +G D S ++ G +AL AV + +++ + +
Sbjct: 57 KNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVK 116
Query: 122 RHYQPLAWAK 131
++++ + K
Sbjct: 117 KNWRLXFYGK 126
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 57 SAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESI 116
A ++ D GR TPLHLA + E+L+ GAD + Q++ G +A ++ E +
Sbjct: 70 GADVNASDSWGR-TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 117 AMIIAR 122
A I+ +
Sbjct: 129 AEILQK 134
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 20/127 (15%)
Query: 7 YAHSPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDESLAAELQADA----------- 55
Y +P+HLA AR + + ++ L +VN D S + L A
Sbjct: 46 YGDTPLHLA-ARVGHLEIVEVL-----LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL 99
Query: 56 --VSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTRE 113
A ++ D G TPLHLA E+L+ GAD + Q++ G +A ++
Sbjct: 100 LKYGADVNADDTIG-STPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Query: 114 ESIAMII 120
E +A I+
Sbjct: 159 EDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 69 ETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIAR 122
+TPLHLA + E+L+ GAD + Q++ G +A ++ E +A I+ +
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 69 ETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIAR 122
+TPLHLA + E+L+ GAD + Q++ G +A ++ E +A I+ +
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMII 120
TPLHLA R ++L+ AGAD + Q++ G +A ++ E +A I+
Sbjct: 41 TPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARH 123
TPL AV ++L+ +GAD +++ ++G++++ AV S+ +I H
Sbjct: 102 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 155
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARH 123
TPL AV ++L+ +GAD +++ ++G++++ AV S+ +I H
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARHYQPL 127
TPL AV ++L+ +GAD +++ ++G++++ AV S+ +I H L
Sbjct: 120 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 177
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIAR 122
TPLHLA + E+L+ GAD + Q++ G +A ++ E +A I+ +
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3H8E|A Chain A, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8E|B Chain B, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8F|A Chain A, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|B Chain B, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|C Chain C, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|D Chain D, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|E Chain E, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|F Chain F, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|F Chain F, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|A Chain A, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|B Chain B, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|C Chain C, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|D Chain D, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|E Chain E, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
Length = 497
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 198 QRSDQTFLFLGEGYTSEDGNVSLSPGS 224
+++D+ F+ +G+G T + G +SL PG+
Sbjct: 256 KKADKPFVLVGKGITFDTGGISLKPGA 282
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 20/128 (15%)
Query: 8 AHSPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDESLAAELQADAVS---------- 57
H+P+HLA A+ + + ++ L +VN D A L A +
Sbjct: 47 GHTPLHLA-AKTGHLEIVEVL-----LKYGADVNAWDNYGATPLHLAADNGHLEIVEVLL 100
Query: 58 ---AVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREE 114
A ++ +D G TPLHLA E+L+ GAD + Q++ G +A ++ E
Sbjct: 101 KHGADVNAKDYEGF-TPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 115 SIAMIIAR 122
+A I+ +
Sbjct: 160 DLAEILQK 167
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMII 120
TPLHLA R ++L+ AGAD Q++ G +A ++ E +A I+
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2G8G|A Chain A, Structurally Mapping The Diverse Phenotype Of Adeno-
Associated Virus Serotype 4
Length = 524
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 200 SDQTFLFLGEGYTSEDGNVSLSPGSLIVLSHKEKEVTNALEGAGAPPTEAEVAHEVALMS 259
S+ +F G ++GN + PG+LI S +E TNA T+ ++ +
Sbjct: 324 SNSQLIFAGP---KQNGNTATVPGTLIFTSEEELAATNA--------TDTDMWGNLPGGD 372
Query: 260 QTNMYRPGID-VTQAELVPHLNWRRQE 285
Q+N P +D +T VP + W+ ++
Sbjct: 373 QSNSNLPTVDRLTALGAVPGMVWQNRD 399
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMII 120
TPLHLA + E+L+ GAD + Q++ G +A ++ E +A I+
Sbjct: 115 TPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4F3V|A Chain A, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
From Esx-1 Secretion System Of Mycobacterium
Tuberculosis
pdb|4F3V|B Chain B, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
From Esx-1 Secretion System Of Mycobacterium
Tuberculosis
Length = 282
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 142 SAARIRDFYMEITFHFESSVIPFIGRIAPSDTYRI 176
S AR D + EIT + ES+ +IGRI DT R+
Sbjct: 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRV 55
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTRE 113
TPL LAV R L AGAD ++ N++ SAL +A R+
Sbjct: 168 TPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRD 211
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 10 SPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDE------SLAAELQADAVSAVIDRR 63
+P+HLA Y I+ L L +VN D LAA + V+ +
Sbjct: 49 TPLHLAA----YWGHLEIVEVL--LKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 64 --DVPGRE----TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIA 117
DV ++ TPLHLA E+L+ GAD + Q++ G +A ++ E +A
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLA 162
Query: 118 MIIAR 122
I+ +
Sbjct: 163 EILQK 167
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 33/131 (25%)
Query: 75 AVRLRDPISAEILMAAGADWSLQNE-NGWSALQEAVCTREESIAMIIARH---------- 123
AV+ D + L+ GA+ + Q E GW+ L AV E I ++ RH
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 124 ----YQPLAWAKWCRRLPRIVASAARIR--DFY-----MEITFHFESSVIPFIGRIAPSD 172
+ A A + L ++ A + DFY ME + + + F
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF-------- 123
Query: 173 TYRIWKRGSNL 183
++KRG+N+
Sbjct: 124 ---LYKRGANV 131
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 75 AVRLRDPISAEILMAAGADWSLQNE-NGWSALQEAVCTREESIAMIIARHYQPLAWAKWC 133
AV+ D + L+ GA+ + Q E GW+ L AV E I ++ RH K
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 134 RRLPRIVASAA 144
P I+A+ A
Sbjct: 92 GATPFILAAIA 102
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIAR 122
TPLHLA + E+L+ GAD + Q++ G +A ++ E +A I+ +
Sbjct: 115 TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 69 ETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIAR 122
ETPLHL E+L+ GAD + Q++ G +A ++ E +A I+ +
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIAR 122
TPLHLA E+L+ GAD + Q++ G +A ++ E +A I+ +
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARH 123
TPLHLA +L E+L+ GAD + ++ G + L A I ++ +H
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARH 123
T LH A+ + + L+ AGA+ + + +GW+ L A + I M + +H
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH 109
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIARHYQPL 127
TPL AV E L+A GAD + + ++G++ + AV + +I H L
Sbjct: 104 TPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161
>pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 27 IIATLPRLSKAGEVNTEDESLAAELQADAVSAVIDRRDVPGRETPLHLAVRLR-DPISAE 85
+I LP +V T+ +A ++QA + V+D RD E P L + LR + I AE
Sbjct: 521 VITELPYQVSGSKVITQ---IADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 577
Query: 86 ILMA 89
+M+
Sbjct: 578 AVMS 581
>pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 27 IIATLPRLSKAGEVNTEDESLAAELQADAVSAVIDRRDVPGRETPLHLAVRLR-DPISAE 85
+I LP +V T+ +A ++QA + V+D RD E P L + LR + I AE
Sbjct: 521 VITELPYQVSGSKVITQ---IADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 577
Query: 86 ILMA 89
+M+
Sbjct: 578 AVMS 581
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 4 FAKYAHSPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDES------LAAELQADAVS 57
+ Y +P+H+A A I+ L L +VN D + LAA L +
Sbjct: 31 YDHYGRTPLHMAAA----VGHLEIVEVL--LRNGADVNAVDTNGTTPLHLAASLGHLEIV 84
Query: 58 AVIDR--RDVPGRE----TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCT 111
V+ + DV ++ TPL+LA E+L+ GAD + Q++ G +A ++
Sbjct: 85 EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDI 144
Query: 112 REESIAMII 120
E +A I+
Sbjct: 145 GNEDLAEIL 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 20/126 (15%)
Query: 10 SPVHLAVARRDYAALRRIIATLPRLSKAGEVNTEDESLAAELQADAV------------- 56
+P+HL V II L L A +VN D+S L A
Sbjct: 49 TPLHLVVNNGHL----EIIEVL--LKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 57 SAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESI 116
A ++ D G TPLHLA E+L+ GAD + Q++ G +A ++ E +
Sbjct: 103 GADVNAMDYQGY-TPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 117 AMIIAR 122
A I+ +
Sbjct: 162 AEILQK 167
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 41 NTEDESLAAELQADAVSAVIDRRDVPGRETPLHLAVRLRDPISAEILMAAGADWSLQNEN 100
N D E+ D V D D G TPL++AV D A+ L+ GAD +LQN
Sbjct: 14 NQRDTKKVKEILQDTTYQV-DEVDTEG-NTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71
Query: 101 GWSALQEAVCTREESIAMIIARHYQP 126
S A I + +H P
Sbjct: 72 SDSPYLYAGAQGRTEILAYMLKHATP 97
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIAR 122
TPLHLA E+L+ GAD + Q++ G +A ++ E +A I+ +
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 343 LTAEERLQLDSALRMGNSDGLCDDDENGVLSCQENGSG 380
+T ERL L + M ++ L D+DE S ++ G+G
Sbjct: 440 MTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAG 477
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 70 TPLHLAVRLRDPISAEILMAAGADWSLQNENGWSALQEAVCTREESIAMIIAR 122
TPLHLA E+L+ GAD + Q++ G +A ++ E +A I+ +
Sbjct: 82 TPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,041,725
Number of Sequences: 62578
Number of extensions: 721747
Number of successful extensions: 1739
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1597
Number of HSP's gapped (non-prelim): 150
length of query: 651
length of database: 14,973,337
effective HSP length: 105
effective length of query: 546
effective length of database: 8,402,647
effective search space: 4587845262
effective search space used: 4587845262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)