BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006311
(651 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 209 bits (532), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 224/434 (51%), Gaps = 44/434 (10%)
Query: 223 YKIPKDIEDLIKKDIVPKVLKKPLLPSTYKDYFAALLYAEDF-YEEKWSGFQLFNVTLEL 281
Y+IPK+I ++I+ P L + L Y +Y+ LL E+ EE + + NV+++
Sbjct: 217 YEIPKEIREMIENKEFPDDLNEGLTARNYANYYKTLLIMEELQLEEDMRAYDMENVSMKR 276
Query: 282 HKAAIYDKSLKNKNLEESDETDDKLFVAFEIDSVPERRPFLLSRDFVYAQRS--GGKSKK 339
++++ E+ + ERRP L+ DF++ + + G
Sbjct: 277 RG----------------------IYLSLEVPGLAERRPSLVHGDFIFVRHAYDDGTDHA 314
Query: 340 FQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRN 399
+QGF++RV + V ++F +FH +H Y+V F++NR+ +R ++AV DA++ L N
Sbjct: 315 YQGFVHRV-EADEVHMKFASEFHQRHTAGSVYNVRFTYNRINTRRLYQAV-DAAEMLDPN 372
Query: 400 YLFPDCASRKSI----PYPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFV 455
+LFP S K + P+ + P L+++ ++ +L +G PY++ GP
Sbjct: 373 FLFPSLHSGKRMIKTKPFVPISP----ALNAEQICSIEMVLGCKGAPPYVIHGPPGT--- 425
Query: 456 LSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM----KDIPASEMFRANAA 511
KT +V EA++Q+ +R+L+CAP N D ++E L+ I +E+FR NAA
Sbjct: 426 -GKTMTLV-EAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAA 483
Query: 512 FREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIF 571
R + + EI + + F CPPL+ L +YK++ ST++S+ L+ +G+ GHF+HI
Sbjct: 484 TRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFTHIL 543
Query: 572 LIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT 631
L +A A+EPE MI + NL T V++ G P + S A GL SY ERL
Sbjct: 544 LDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFEC 603
Query: 632 EAYRSCNSMFFSQL 645
+ Y + + ++L
Sbjct: 604 DYYCEGDENYVTKL 617
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 177/356 (49%), Gaps = 17/356 (4%)
Query: 304 DKLFVAFEIDSVPERRPFLLSRDFVYAQRS----GGKSKKFQGFLYRVVKWTTVLVEFEE 359
DK + E+ V E RP +L D + +S K++G+++RV + V + F +
Sbjct: 400 DKKLLVLELPGVSENRPSVLRGDHLLLTKSEELQNSNVTKYKGYVHRV-ELDQVKLGFSK 458
Query: 360 DFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPYPSLCPY 419
+ N K+ V F+ NR+ L+ H AV ++ LFP + R + PS
Sbjct: 459 RLLERFIDNMKFSVEFTINRLPLRLQHRAVHMVVQHHLKDVLFPVASRRLNPVSPSALRL 518
Query: 420 SNYKLDS--DSNSAVHQILSFEGQ-SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK 476
+ KL+ + +AV I++ + +PYL+ GP KT +V EA+ Q+ + +
Sbjct: 519 FDQKLEKNPEQKTAVCNIVAGTSKPAPYLVFGPPGT----GKTVTIV-EAIKQVEKNTGG 573
Query: 477 SRILICAPWNRTCDKLMECLM--KDIPASEMFRANAAFREADGVSDEIFQVSLVERECFS 534
+RIL CAP N D+L E L+ + + A ++R A+ R + + S VE E
Sbjct: 574 ARILACAPSNSAADQLGEKLITSQHVDARNIYRIYASSRNPKEIPKVLENNSNVEGENII 633
Query: 535 CPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLAN-E 593
P E+L YK++ T V++ RL + G GHFSHIF+ +A A EPE +I + L N E
Sbjct: 634 FPCKEDLMPYKIVVCTLVTAGRLVSGGFPVGHFSHIFVDEAGHAVEPEIVISVAGLLNAE 693
Query: 594 NTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL-TEAYRSCNSMFFSQLFTE 648
++++ G P +RS A K GL +S ERL E Y+ ++ F ++ T+
Sbjct: 694 TGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLERLMTQNELYQKGDTGFDNRYVTK 749
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 195/427 (45%), Gaps = 46/427 (10%)
Query: 241 VLKKPLLPSTYKDYFAALLYAEDFYEEKWSGFQLFNVTLELHKAAIYDKSLKNKNLEESD 300
+L+ PL P YK F LL+ E+ + LE+ ++ +L+E
Sbjct: 323 LLEAPLQPENYKQKFELLLHLEE-------------IQLEV--------DIRRYDLQEVP 361
Query: 301 ETDDKLFVAFEIDSVPERRPFLLSRDFVYA----QRSGGKSKKFQGFLYRVVKWTTVLVE 356
++ + + V E RP +L D ++A +R ++G+++ V + V +
Sbjct: 362 MVQNRALLLLNVPGVAENRPSVLRGDHLFASLSSERDSSPRVLYKGYVHGV-ELERVQLG 420
Query: 357 FEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPYPSL 416
F + + K+DV+F+FNR+ L+ H A A A + LFP + ++S+
Sbjct: 421 FSPKLMKKFVNDLKFDVTFTFNRLPLQVQHRAAAMAMQKGLDSVLFPSASCQRSLFTGIF 480
Query: 417 CP-YSNYKLDSDS---NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472
P + + K++++ + H + +PYL+ GP KT +V EA+ Q+
Sbjct: 481 QPRWFDRKVEANEEQCQAVKHIVTGMSRPAPYLIFGPPGTG----KTVTLV-EAIKQVWS 535
Query: 473 RSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVE--R 530
+RIL CAP N D L + L+ +I ++R A+ V ++ +
Sbjct: 536 CFKDARILACAPSNSAADLLCQRLLTNIAPRYIYRIMASSANYKDVPADVRPCCNWDDSE 595
Query: 531 ECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNL 590
+C+ P + L+ Y+++ +T V++ RL + G+FSH+F+ + A EPE+++ + L
Sbjct: 596 KCYVYPSKKLLKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVVAIAGL 655
Query: 591 -------ANEN-TRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLTEA-YRSCNSMF 641
N N ++++ G P RS +A ++GL S ERL L A Y + +
Sbjct: 656 LTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSDEGY 715
Query: 642 FSQLFTE 648
Q T+
Sbjct: 716 NPQFVTK 722
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 181/399 (45%), Gaps = 36/399 (9%)
Query: 241 VLKKPLLPSTYKDYFAALLYAEDFYEEKWSGFQLFNVTLELHKAAIYDKSLKNKNLEESD 300
+L+ PL Y + F LLY E+ ++H D NK+
Sbjct: 360 LLQSPLTFDNYAERFDLLLYLEE---------------CQMH----VDIKRYNKDSVTLH 400
Query: 301 ETDDKLFVAFEIDSVPERRPFLLSRDFVYAQRSG----GKSKKFQGFLYRVVKWTTVLVE 356
DK + + V E RP +L D + +S K++G+++RV L
Sbjct: 401 RDRDKRLMGLNLPGVSENRPSVLRGDHLLLTKSEEVTFSNVTKYKGYVHRVELDQVKLGL 460
Query: 357 FEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPY-PS 415
+ + K+ V F+ NR+ ++ H AV A ++ LFP ASR P P
Sbjct: 461 SKRFLKDVYIDKMKFRVEFTVNRIPVRLQHRAVHMAVQHNLKDVLFP-MASRSLNPVSPP 519
Query: 416 LCPYSNYKLDSD--SNSAVHQILSFEGQ-SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472
+ KL+ + SAV I++ + +PYL+ GP KT +V EA+ Q+ +
Sbjct: 520 ALRLFDRKLEYNFQQYSAVCNIVAGTSKPAPYLVFGPPGT----GKTVTIV-EAIKQVEK 574
Query: 473 RSPKSRILICAPWNRTCDKLMECLM--KDIPASEMFRANAAFREADGVSDEIFQVSLVER 530
P + IL CAP N D+L E L+ + + A +++R A+ R + + V+
Sbjct: 575 NIPDAYILACAPSNSAADQLCEKLITSEHVDAHKIYRLYASSRNQKDIPKILKDNCNVDE 634
Query: 531 ECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNL 590
E P E+L YK++ T V++ RL G + HF+H F+ +A A E ET+I + L
Sbjct: 635 EMIDFPCKEDLMSYKILICTLVTAGRLVTGGFSEDHFTHNFVDEAGHAVESETIISVAGL 694
Query: 591 AN-ENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERL 628
N E ++++ G P +RS +A +GL +S ERL
Sbjct: 695 LNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERL 733
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 25/339 (7%)
Query: 307 FVAFEIDSVPERRPFLLSRDFVYAQRSGGKSKK----FQGFLYRVVKWTTVLVEFEEDFH 362
+ E+ V E RP +L D ++A S + ++GF+++V + V + F
Sbjct: 377 LLTLEVPGVAESRPSVLRGDHLFALLSSETQQDDPVTYKGFVHKV-ELDRVKLSFSTSLL 435
Query: 363 SQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPYPSLCPYSNY 422
S+ + V+F+FNR L+ H A+ + LFP ASR PS + Y
Sbjct: 436 SRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWVLWPMLFP-VASRGVSLLPSDVKFKLY 494
Query: 423 KLDSDSN-----SAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS 477
+SN + H + +PY++ GP KT +V EA+ Q+ + PK+
Sbjct: 495 DRSLESNPEQLQAMKHIVRGTTRPAPYIIFGPPGTG----KTVTLV-EAIKQVVKHLPKA 549
Query: 478 RILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVS--LVERECFSC 535
IL CAP N D L + L +P+S ++R A R+ V ++I ++ +
Sbjct: 550 HILACAPSNSGADLLCQRLRVHLPSS-IYRLLAPSRDIRMVPEDIKTCCNWDAKKGEYVY 608
Query: 536 PPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNL----- 590
P + L+QY+V+ +T +++ RL + HF+HIF+ +A EPE+++ + L
Sbjct: 609 PAKKHLQQYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKE 668
Query: 591 -ANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERL 628
N ++++ G P +RS +A K+GL S ERL
Sbjct: 669 TGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERL 707
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 113/475 (23%), Positives = 210/475 (44%), Gaps = 79/475 (16%)
Query: 210 KASFIWVQKGATNYKIPKDIEDLI-----KKDIVPKV------LKKPLLPSTYKDYFAAL 258
K F+ ++ G +++PK++ + +++++ + L +PL TY F L
Sbjct: 566 KRRFVALRLGC--FEVPKELRQICLTSERRQEMIKAIEQHYSFLTEPLSIKTYMHRFRLL 623
Query: 259 LYAEDFYEEKWSGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKLFVAFEIDSVPER 318
L+ E+ E + F +N + + + D F+ +I+++ ER
Sbjct: 624 LHLEEI--ECFVNF-------------------RNYDRDRAHFLRDGEFLTLQIENLAER 662
Query: 319 RPFLLSRDFV-----YAQRSGGKSKKFQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDV 373
RP L+ D + ++ +K ++G +++V+ + +L++F F ++ Y +
Sbjct: 663 RPSLVIGDTLRVINPWSDPDSQTTKSYEGIIHKVL-FDRILLKFHSSFQEKYN-GEDYRL 720
Query: 374 SFSFNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIP-------------YPSLCPYS 420
F F+R ++ H A++ + ++LFP +++ P Y S +
Sbjct: 721 EFYFSRYSFRKQHHAISKIVGVMGEDFLFPSKVTKRENPQLDVYMKDDDMYLYDSKLEWY 780
Query: 421 NYKLDSDSNSAVHQILSFEGQS-PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI 479
N L+S AV IL E ++ PY+L GP + KT ++ E +LQ+ R P +RI
Sbjct: 781 NQSLNSIQKRAVFNILRGEAENIPYVLFGPPGS----GKTMTLI-ETLLQLVRNLPGARI 835
Query: 480 LICAPWNRTCDKLMECLM--KDIPASEMFRANAAFR-EADGVSDEIFQ---------VSL 527
L+ P N + D + + L+ K + + R + + E D + EI V
Sbjct: 836 LVGTPSNSSADLVTKRLIDSKALLQGDFIRLVSYNQVEKDLIPPEIMSYCATSDVGAVGS 895
Query: 528 VERECFSCPPLEELR-------QYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 580
E + +LR +++ ST + G AGHF+H+ +A TE
Sbjct: 896 CEDKMMVTESGLKLRCQAKFIGTHRITISTCTTLGNFLQLGFPAGHFTHVLFDEAGQCTE 955
Query: 581 PETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLTEAYR 635
PETM+ + L + ++V+++G P S V S IA K G +S+ ERL YR
Sbjct: 956 PETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPYR 1010
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 177/383 (46%), Gaps = 30/383 (7%)
Query: 268 KWSGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKL-----FVAFEIDSVPERRPFL 322
KW +++ L + + +++ +LE T D + + E+ V E RP +
Sbjct: 332 KWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWDPIDRNPRLLTLEVPGVAESRPSV 391
Query: 323 LSRDFVYAQRSGGKSKK----FQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSFN 378
L D ++A S + ++GF+++V + V + F S+ + V+F+FN
Sbjct: 392 LRGDHLFALLSSETHHEDPVTYKGFVHKV-ELDRVKLSFSTSLLSRFVDGLTFKVNFTFN 450
Query: 379 RVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPYPSLCPYSNYKLDSDSN-----SAVH 433
R L+ H A+ LFP ASR PS Y +SN + H
Sbjct: 451 RQPLRVQHRALELTGRWPLEPMLFP-VASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKH 509
Query: 434 QILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLM 493
++ +PY++ GP KT +V EA+ Q+ + PK+ IL CAP N D L
Sbjct: 510 IVMGTTRPAPYIIFGPPGTG----KTVTLV-EAIKQVVKHLPKAHILACAPSNSGADLLC 564
Query: 494 ECLMKDIPASEMFRANAAFREADGVSDEIFQVS--LVERECFSCPPLEELRQYKVISSTF 551
+ L +P+S ++R A R+ V ++I ++ F P ++L++Y+V+ +T
Sbjct: 565 QRLRVHLPSS-IYRLLAPSRDIHLVPEDIKPCCNWDAKKGDFVFPSKKKLQEYRVLITTL 623
Query: 552 VSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLA------NENTRVIVTGAPHN 605
+++ RL + HF+HIF+ +A A EPE+++ + L N ++++ G P
Sbjct: 624 ITASRLVSAQFPIDHFTHIFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQ 683
Query: 606 SPSRVRSDIARKNGLKMSYFERL 628
+R + +K+GL S ERL
Sbjct: 684 LGPVLRCPLTQKHGLGYSLLERL 706
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 177/383 (46%), Gaps = 30/383 (7%)
Query: 268 KWSGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKL-----FVAFEIDSVPERRPFL 322
KW +++ L + + +++ +LE T D + + E+ V E RP +
Sbjct: 332 KWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWDPVDQNPRLLTLEVPGVTESRPSV 391
Query: 323 LSRDFVYAQRSGGKSKK----FQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSFN 378
L D ++A S ++ ++GF+++V + V + F S+ + V+F+FN
Sbjct: 392 LRGDHLFALLSSETHQEDPITYKGFVHKV-ELDRVKLSFSMSLLSRFVDGLTFKVNFTFN 450
Query: 379 RVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPYPSLCPYSNYKLDSDSN-----SAVH 433
R L+ H A+ L LFP A R PS Y +SN + H
Sbjct: 451 RQPLRVQHRALELTGRWLLWPMLFP-VAPRDVPLLPSDVKLKLYDRSLESNPEQLQAMRH 509
Query: 434 QILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLM 493
+ +PY++ GP KT +V EA+ Q+ + PK+ IL CAP N D L
Sbjct: 510 IVTGTTRPAPYIIFGPPGTG----KTVTLV-EAIKQVVKHLPKAHILACAPSNSGADLLC 564
Query: 494 ECLMKDIPASEMFRANAAFREADGVSDEIFQVS--LVERECFSCPPLEELRQYKVISSTF 551
+ L +P+S ++R A R+ V ++I ++ + P ++L++Y+V+ +T
Sbjct: 565 QRLRVHLPSS-IYRLLAPSRDIRMVPEDIKPCCNWDAKKGEYVFPAKKKLQEYRVLITTL 623
Query: 552 VSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNL------ANENTRVIVTGAPHN 605
+++ RL + HF+HIF+ +A EPE+++ + L + ++++ G P
Sbjct: 624 ITAGRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQ 683
Query: 606 SPSRVRSDIARKNGLKMSYFERL 628
+RS + +K+GL S ERL
Sbjct: 684 LGPVLRSPLTQKHGLGYSLLERL 706
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 22/230 (9%)
Query: 419 YSNYKLDSDSNSAVHQILSFEGQS-PYLLEGPLCNNFVLSKTGNVVR--EAVLQIRRRSP 475
+ N L+ + AV +ILS + + PY+L GP TG V EAVLQ+ P
Sbjct: 740 FFNPVLNENQKLAVKRILSGDCRPLPYILFGP-------PGTGKTVTIIEAVLQVHFALP 792
Query: 476 KSRILICAPWNRTCDKLMECLM----KDIPASEMFRANAAFREADGVSDEIFQVSLVERE 531
SRIL+CAP N D + CL K + + M R NA R + V D V+
Sbjct: 793 DSRILVCAPSNSAAD--LVCLRLHESKVLQPATMVRVNATCRFEEIVIDA------VKPY 844
Query: 532 CFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLA 591
C + + ++++I +T SS + G+ GHF+H+F+ +A A+EPE +I LG ++
Sbjct: 845 CRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMS 904
Query: 592 NENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLTEAYRSCNSMF 641
+ + ++++ G P ++S +A GL +S+ ERL AY+ + F
Sbjct: 905 DISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAF 954
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 44/243 (18%)
Query: 175 HEVLKKPSSPLFHKASSSSKPTLSPLPTDSTNQQKKASFIWVQKGATNYKIPKDIEDLIK 234
E L P K SS+ S T QK+ S + Y IP + ++
Sbjct: 450 EESLIAAREPFSWKKLKSSQALTSAKTTVVVTAQKRNSRRQLPSFLPQYPIPDRLRKCVE 509
Query: 235 KDIVPKVLK-KPLLP-----STYKDYFAALLYAEDFYEEKWSGFQLFNVTLELHKAAIYD 288
+ I +L +PLL S YK+ F+ LL+ E+ Y E
Sbjct: 510 QKI--DILTFQPLLAELLNMSNYKEKFSTLLWLEEIYAE--------------------- 546
Query: 289 KSLKNKNLEESDETDDKLFVAFEIDSVPERRPFLLSRDFVYAQRSGGKSKKFQGFLYRVV 348
LK N+ + + E+ + E RP L + D + K++++ G +
Sbjct: 547 MELKEYNMSGIILRRNGDLLVLEVPGLAEGRPSLYAGDKLIL-----KTQEYNGHAIEYI 601
Query: 349 KWTTVLVEFEEDFHSQHQPNHK-------YDVSFSFNRVCLKRAHEAVADASDSLFRNYL 401
+ T + EED + P + DV F++NR +R H A+ L L
Sbjct: 602 SYVTEI--HEEDVTLKINPEFEQAYNFEPMDVEFTYNRTTSRRCHFALEHVI-HLGVKVL 658
Query: 402 FPD 404
FP+
Sbjct: 659 FPE 661
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 22/223 (9%)
Query: 419 YSNYKLDSDSNSAVHQILSFEGQS-PYLLEGPLCNNFVLSKTGNVVR--EAVLQIRRRSP 475
+ N L+ + AV +ILS + + PY+L GP TG V EAVLQ+ P
Sbjct: 742 FFNPVLNENQKLAVRRILSGDCRPLPYILFGP-------PGTGKTVTIIEAVLQVHYALP 794
Query: 476 KSRILICAPWNRTCDKLMECLM---KDIPA-SEMFRANAAFREADGVSDEIFQVSLVERE 531
SRIL+CAP N D + CL +P + M R NA R + + D I +
Sbjct: 795 DSRILVCAPSNSAAD--LVCLRLHESKVPKPAAMVRVNATCRFEETIIDAI------KPY 846
Query: 532 CFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLA 591
C + ++++I +T S+ + G+ G+F+H+F+ +A A+EPE +I LG ++
Sbjct: 847 CRDGEDIWRASRFRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLIS 906
Query: 592 NENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLTEAY 634
+ N ++++ G P ++S +A GL +S ERL AY
Sbjct: 907 DINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAY 949
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 44/243 (18%)
Query: 175 HEVLKKPSSPLFHKASSSSKPTLSPLPTDSTNQQKKASFIWVQKGATNYKIPKDIEDLIK 234
E L P K SS+ +S T QK+ S + Y IP ++ ++
Sbjct: 390 EEALIAVREPFSWKKPKSSQTLVSAKTTVVVTTQKRNSRRQLPSFLPQYPIPDRLKKCVE 449
Query: 235 KDIVPKVLK-KPLLP-----STYKDYFAALLYAEDFYEEKWSGFQLFNVTLELHKAAIYD 288
+ I +L +PLL S YK+ F+ LL+ E+ + E +EL + +
Sbjct: 450 QKI--DILTFQPLLAELLNMSNYKEKFSTLLWLEEIHAE-----------IELKEYNMSR 496
Query: 289 KSLKNKNLEESDETDDKLFVAFEIDSVPERRPFLLSRDFVYAQRSGGKSKKFQGFLYRVV 348
LK K + E+ + E RP L + D + KS+++ G + +
Sbjct: 497 VVLKRKGD----------LLVLEVPGLAESRPSLYAGDKLIL-----KSQEYNGHVIEYI 541
Query: 349 KWTTVLVEFEEDFHSQHQPNHK-------YDVSFSFNRVCLKRAHEAVADASDSLFRNYL 401
+ V+ EED + P + DV F++NR +R H A+ L L
Sbjct: 542 GY--VMEIHEEDVTLKLNPGFEQMYNFEPMDVEFTYNRTTSRRCHYALEQVI-HLGVKVL 598
Query: 402 FPD 404
FP+
Sbjct: 599 FPE 601
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 121/503 (24%), Positives = 207/503 (41%), Gaps = 73/503 (14%)
Query: 191 SSSKPTLSPLPTDSTNQQKKASFIWVQKGATNYKIPKDIEDLIKKDIVPKVLKKPLLPST 250
SSSK + P ++T+ +K Y+IP + L + ++ K L K S
Sbjct: 408 SSSKTIIDFEPNETTDLEKSL--------LIRYQIPLSADQLFTQSVLDKSLTK----SN 455
Query: 251 YKDYFAALLYAEDFYEEKWSGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKLFVAF 310
Y+ LLY E+ ++ FN+ ++L A + L + + +LF F
Sbjct: 456 YQSRLHDLLYIEEI--AQYKEISKFNLKVQLQILASF--MLTGVSGGAKYAQNGQLFGRF 511
Query: 311 EI-----DSVPERRPFLLSRDFVY---------AQRSGGKSKKFQGFLYRVVKWTTVLV- 355
++ + R + + VY Q G K K ++ + K L
Sbjct: 512 KLTETLSEDTLAGRLVMTKVNAVYLLPVPKQKLVQTQGTKEKVYEATIEEKTKEYIFLRL 571
Query: 356 --EFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPY 413
E E+ + + + + ++ F NR+ L H A+ D+ LFPD + +IP+
Sbjct: 572 SRECCEELNLRPDCDTQVELQFQLNRLPLCEMHYALDRIKDN---GVLFPDISMTPTIPW 628
Query: 414 P-------SLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREA 466
L P N K ++ A+ L+ + P L+ GP + KT + +A
Sbjct: 629 SPNRQWDEQLDPRLNAK-QKEAVLAITTPLAIQ-LPPVLIIGP----YGTGKTFTLA-QA 681
Query: 467 VLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI-----PASEMFRANAAFREADGVSDE 521
V I ++ ++RILIC N D ++ + P + R R V
Sbjct: 682 VKHILQQQ-ETRILICTHSNSAADLYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVHPV 740
Query: 522 IFQVSLVE--RECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579
+ Q L+ F P E++ +++V+ T +S L + G F+HI L +A+ A
Sbjct: 741 VHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAM 800
Query: 580 EPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERL----------- 628
E ET++ L LA +NTR+++ G V S+ AR+ L +S +RL
Sbjct: 801 ECETIMPLA-LATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCR 859
Query: 629 -CLTEAYRSCNSM--FFSQLFTE 648
L E YRS ++ + S+LF E
Sbjct: 860 ILLCENYRSHEAIINYTSELFYE 882
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 119/505 (23%), Positives = 213/505 (42%), Gaps = 77/505 (15%)
Query: 191 SSSKPTLSPLPTDSTNQQKKASFIWVQKGATNYKIPKDIEDLIKKDIVPKVLKKPLLPST 250
SSSK + P ++T+ +K Y+IP + L + ++ K L K +
Sbjct: 408 SSSKTIVDFEPNETTDLEKSL--------LIRYQIPLSADQLFTQSVLDKSLTK----TN 455
Query: 251 YKDYFAALLYAEDFYEEKWSGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKLFVAF 310
Y+ LLY E+ ++ FN+ ++L A + L + + +LF F
Sbjct: 456 YQARLHDLLYIEEI--AQYKEVSRFNLKVQLQILASF--MLTGVSGGAKYAQNGQLFGRF 511
Query: 311 EI------DSVPERRPFLLSR-DFVY---------AQRSGGKSKKFQGFLYRVVK---WT 351
++ D++ R +++R + VY Q G K K ++ + K +
Sbjct: 512 KLTETLSEDTLAGR--LVMTRVNAVYLLPVPKEKLVQSQGTKEKVYEATIEEKTKDYVFL 569
Query: 352 TVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSI 411
+ E E+ + + + ++ F NR+ L H A+ D+ LFPD + +I
Sbjct: 570 RISRECCEELSLRPDCDIQVELQFQLNRLPLCEMHYALDRIKDNAV---LFPDISMTPTI 626
Query: 412 PYP-------SLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVR 464
P+ L P N K ++ A+ LS + P L+ GP + KT + +
Sbjct: 627 PWSPNRQWDEQLDPRLNAK-QKEAVLAITTPLSIQ-LPPVLIIGP----YGTGKTFTLAQ 680
Query: 465 EAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI-----PASEMFRANAAFREADGVS 519
A ++++ ++RILIC N D ++ + P + R R V
Sbjct: 681 AAKHILQQQ--ETRILICTHSNSAADLYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVH 738
Query: 520 DEIFQVSLVE--RECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 577
+ Q L+ + F P E++ +++V+ T +S L + G F+H+ L +A+
Sbjct: 739 PVVHQYCLISSTQSTFQMPQKEDILKHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQ 798
Query: 578 ATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERL--------- 628
A E ET++ L LA +NTR+++ G V S+ AR+ L +S +RL
Sbjct: 799 AMECETIMPLA-LATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFP 857
Query: 629 ---CLTEAYRSCNSM--FFSQLFTE 648
L E YRS ++ + S+LF E
Sbjct: 858 CRILLCENYRSHEAIINYTSELFYE 882
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz
PE=2 SV=1
Length = 1860
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 115/481 (23%), Positives = 196/481 (40%), Gaps = 79/481 (16%)
Query: 221 TNYKIPKDIEDLIKKDIVPKVLKKPLLPSTYKDYFAALLYAEDFYEEKWSGFQLFNVTLE 280
T Y+IP + L + ++ K L + Y+ LLY E+ ++ FN+ +
Sbjct: 421 TRYQIPLSADQLFTQSVLDKTLTR----DNYQPRLHDLLYIEEI--AQYKEVTKFNIKVN 474
Query: 281 LHKAAIY--------DKSLKNKNL--------EESDETDDKLFVAFEIDSVPERRPFLLS 324
L + K +N L S++T V +++SV LL
Sbjct: 475 LQLVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSV-----LLLP 529
Query: 325 RDFVYAQR------SGGKSKKFQGFLYRVVK---WTTVLVEFEEDFHSQHQPNHKYDVSF 375
V+ +R +G K + ++ + K + V E ++ + ++ F
Sbjct: 530 ---VFKERMGQNQPAGAKERVYEALIEEKTKDYIFLRVCKECCDELGLVADQELQVELQF 586
Query: 376 SFNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPYP-------SLCPYSNYKLDSDS 428
NR+ L H A+ D+ + LFPD + +IP+ L P N K ++
Sbjct: 587 QLNRLPLCEMHYALDRVRDN---SILFPDISLTPTIPWSPNRQWDEQLDPRLNAK-QKEA 642
Query: 429 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRT 488
A+ LS P L+ GP + KT + +AV I ++ P+SR+LIC N
Sbjct: 643 ILAITTPLSI-NLPPVLIIGP----YGTGKTFTLA-QAVKHILKQ-PESRVLICTHSNSA 695
Query: 489 CDKLMECLMKDI-----PASEMFRANAAFREADGVSDEIFQVSLVERE--CFSCPPLEEL 541
D ++ + P + R R V + Q L+ F P +++
Sbjct: 696 ADLYIKDYLHPYVEAGNPHARPLRVYFRNRWVKTVHPLVQQYCLISGAHFTFQMPTRQDV 755
Query: 542 RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTG 601
+++V+ T +S L + G F+HI L +A+ A E ET++ L LA ++TRV++ G
Sbjct: 756 ERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLA-LAVKSTRVVLAG 814
Query: 602 APHNSPSRVRSDIARKNGLKMSYFERL------------CLTEAYRSCNSM--FFSQLFT 647
V S+ AR+ L +S +RL L E YRS ++ + S LF
Sbjct: 815 DHMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSDLFY 874
Query: 648 E 648
E
Sbjct: 875 E 875
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 41/238 (17%)
Query: 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482
KL++ + AV +LS + L++GP ++ V A +Q R+R S +L+C
Sbjct: 392 KLNASQSEAVRAVLS---KPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVC 448
Query: 483 APWNRTCDKLMECLMK--------------DIPASEMF----------RANAAFREADGV 518
AP N D+L E + + DI +S F + N + +
Sbjct: 449 APSNVAVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPELQRLLKL 508
Query: 519 SDEIFQVSLVE----RECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLID 574
E ++S+ + R + E LR VI T V + ++ I+ F + + +
Sbjct: 509 RSENNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVGA---GDRRISKYKFRSVLIDE 565
Query: 575 ASSATEPETMI--VLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL 630
A+ A+EPE MI VLG +V++ G V + L S FERL +
Sbjct: 566 ATQASEPECMIPLVLG-----AKQVVLVGDHQQLGPVVMNKKVALASLSQSLFERLII 618
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1
SV=6
Length = 2649
Score = 43.1 bits (100), Expect = 0.007, Method: Composition-based stats.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 18/195 (9%)
Query: 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCD-KLMECLMKDI- 500
P L+ GP F KT + ++ IRR P++++LIC N D + E +
Sbjct: 539 PLLIYGP----FGTGKTYTLAMASLEVIRR--PETKVLICTHTNSAADIYIREYFHSHVS 592
Query: 501 ---PASEMFRANAAFREADGVSDEIFQVSLV--ERECFSCPPLEELRQYKVISSTFVSSF 555
P + R R Q + +R+ F P EL +++V+ +T +
Sbjct: 593 GGHPEATPLRVMYTDRPLSQTDPVTLQYCCLTDDRQAFRPPTRAELARHRVVVTTTSQAR 652
Query: 556 RLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIA 615
L + G FSHI + +A+ E E + L A+ TR+++ G R+ S +A
Sbjct: 653 ELR---VPVGFFSHILIDEAAQMLECEALTPLA-YASHGTRLVLAGDHMQVTPRLFS-VA 707
Query: 616 RKNGLKMSYFERLCL 630
R + + RL L
Sbjct: 708 RARAAEHTLLHRLFL 722
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 112/268 (41%), Gaps = 61/268 (22%)
Query: 423 KLDSDSNSAVHQILSFEGQSPY-LLEGPLCNNFVLSKTGNVVREA-VLQIRRRSPKSRIL 480
+L++ +A+ Q+LS +P L++GP TG V A ++ + S++L
Sbjct: 455 ELNASQIAAIKQVLS----NPLSLIQGP-------PGTGKTVTSATIIYHLAKMSNSQVL 503
Query: 481 ICAPWNRTCDKLMECLMK--------------DIPAS-------EMFRANAAFREADG-- 517
+CAP N D+L E + + D+ +S E R N +E DG
Sbjct: 504 VCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESSVSFLALHEQVRMNTTNKELDGLV 563
Query: 518 -VSDEIFQVSLVERECFS----CPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFL 572
+ E ++S + + F E L+ V+ T V + + ++ F ++ +
Sbjct: 564 KLKTETGELSSQDEKRFKQLTRQAEREILQNADVVCCTCVGA---GDPRLSKMKFRNVLI 620
Query: 573 IDASSATEPETMI--VLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLC- 629
+++ + EPE MI VLG +V++ G + + A K GL S FERL
Sbjct: 621 DESTQSAEPECMIPLVLG-----CKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVK 675
Query: 630 -------LTEAYRS--CNSMFFSQLFTE 648
L YR C S F S +F E
Sbjct: 676 LQFTPIRLKVQYRMHPCLSEFPSNMFYE 703
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 567 FSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVR-SDIARKNGLKMSYF 625
F + L + S TEP +++ + E ++I+ G P P ++ SD A +NGL+ + F
Sbjct: 625 FPVVVLDECSQITEPASLLPIARFECE--KLILVGDPKQLPPTIQGSDAAHENGLEQTLF 682
Query: 626 ERLCL 630
+RLCL
Sbjct: 683 DRLCL 687
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 39.7 bits (91), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 106/478 (22%), Positives = 173/478 (36%), Gaps = 91/478 (19%)
Query: 224 KIPKDIEDLIKKDIVPKVLKKPLLPSTYKDYFAALLYAEDF---------------YEEK 268
KIP + E L + I + + K L +K+ +A L ED YE+
Sbjct: 239 KIPSEQEQLRARQITAQQINK--LEELWKENPSATL--EDLEKPGVDEEPQHVLLRYEDA 294
Query: 269 WSGFQLFNVTLELHKAAIYDKSLKNKNLEES-----DETDDKLFVAF----EIDSVPERR 319
+ +F ++L A YDK LK +++ D +K +AF + DS E
Sbjct: 295 YQYQNIFGPLVKLE--ADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDL 352
Query: 320 PFLLSRDFVYAQ------RSGGKSKKFQGFLYRVVK-----WTTVLVEFEEDFHSQHQPN 368
+ RD Q R G + V+K + +E + +
Sbjct: 353 VIIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVT 412
Query: 369 HKYDVSFSFNRVCLKRAHEAVAD--ASDSLFRNYLFPDCASRKSIPYPSLCP----YSNY 422
H + V F + R A+ ++ Y++ + C ++
Sbjct: 413 HNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQ 472
Query: 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RRSPKSRILI 481
L ++S V+ + + + L++GP TG V A + R +L+
Sbjct: 473 GLPDLNHSQVYAVKTVLQRPLSLIQGP-------PGTGKTVTSATIVYHLARQGNGPVLV 525
Query: 482 CAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL 541
CAP N D+L E + + ++ R A REA + R S P L++L
Sbjct: 526 CAPSNIAVDQLTEKIHQT--GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKL 583
Query: 542 RQYK----VISSTFVSSFR----------LHNQGIT------AG-------HFSHIFLID 574
+Q K +SS +R L N + AG F I + +
Sbjct: 584 QQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDE 643
Query: 575 ASSATEPETM--IVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL 630
++ ATEPE M +VLG ++I+ G V A K GL S FERL +
Sbjct: 644 STQATEPECMVPVVLG-----AKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVV 696
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 45/200 (22%)
Query: 459 TGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFRE--AD 516
+GN ++ V+ R+ + R+L+CAP N D+++ L+ ++ R+ A
Sbjct: 358 SGNELKPEVVNASRKY-RLRVLVCAPSNSALDEIVLRLL-----------SSGLRDENAQ 405
Query: 517 GVSDEIFQVSLVERECFSCPPLEELRQYKVISS----------TFVSSFR---LHNQGIT 563
+ +I ++ L + L+ L K S+ T + S R L I
Sbjct: 406 TYTPKIVRIGLKAHHSVASVSLDHLVAQKRGSAIDKPKQGTTGTDIDSIRTAILEEAAIV 465
Query: 564 AGHFS--------------HIFLID-ASSATEPETMIVLGNLANENTRVIVTGAPHNSPS 608
S + +ID A+ A EP T+I LA +V + G P P+
Sbjct: 466 FATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLI---PLATRCKQVFLVGDPKQLPA 522
Query: 609 RVRSDIARKNGLKMSYFERL 628
V S +A+ +G S FERL
Sbjct: 523 TVISTVAQDSGYGTSMFERL 542
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 84/216 (38%), Gaps = 44/216 (20%)
Query: 445 LLEGPLCNNFVLSKTGNVVREAVLQIR-RRSPKSRILICAPWNRTCDKLMECLMKDIPAS 503
L++GP TG V A + R +L+CAP N D+L E + +
Sbjct: 500 LIQGP-------PGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT--GL 550
Query: 504 EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYK----VISSTFVSSFR--- 556
++ R A REA + R S P L++L+Q K +SS +R
Sbjct: 551 KVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALK 610
Query: 557 -------LHNQGIT------AG-------HFSHIFLIDASSATEPETM--IVLGNLANEN 594
L N + AG F I + +++ ATEPE M +VLG
Sbjct: 611 RTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLG-----A 665
Query: 595 TRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL 630
++I+ G V A K GL S FERL +
Sbjct: 666 KQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVV 701
>sp|A2RLU4|EX7L_LACLM Exodeoxyribonuclease 7 large subunit OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=xseA PE=3 SV=1
Length = 417
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 455 VLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFRE 514
V S +G V+R+ + ++RR P S+I+ L ++ A+E N R
Sbjct: 141 VTSPSGAVIRDIITTVQRRFPMSQIV-----------LYPTKVQGAGAAEEISGN--IRR 187
Query: 515 ADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLID 574
A+ D F V ++ R S L + V+ + F S + + + GH + + L D
Sbjct: 188 ANERGD--FDVMIIGRGGGSIEDLWGFNEEIVVRAIFESRIPIIS---SVGHETDVTLAD 242
Query: 575 ASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLTEAY 634
+ + T LA NT++ + + SR+ + + ++ E+L + +
Sbjct: 243 FVADSRAATPTAAAELATPNTKIDLINWANEQESRLFNRLTHLIKIRRERLEKLSQSVVF 302
Query: 635 RSCNSMF 641
R ++
Sbjct: 303 RQPERLY 309
>sp|P53540|SPC98_YEAST Spindle pole body component SPC98 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPC98 PE=1 SV=1
Length = 846
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 298 ESDETDDKLFVAFEIDSVPERRPFLLSRDFVYAQRSGGKSKKFQGFLYRVVKWTTVLVEF 357
+++ TDD I+ ER P + ++ Y GKS F + V+WT EF
Sbjct: 369 DTNGTDDDFIYHIPIEFNQERVPAFIPKELAYKIFMIGKSYIFLEKYCKEVQWTN---EF 425
Query: 358 EEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNYLFPDCA 406
+ +H +Q N +S +F + + E V + L + + + D
Sbjct: 426 SKKYHVLYQSNSYRGISTNFFEIINDQYSEIVNHTNQILNQKFHYRDVV 474
>sp|P57126|GYRB_BUCAI DNA gyrase subunit B OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=gyrB PE=3 SV=1
Length = 803
Score = 33.1 bits (74), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 411 IPYPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNV--VREAVL 468
IP P + KL S +V + L E YLLE P + F++ K N VREA
Sbjct: 327 IPDPKFSSQTKDKLVSSEARSVIESLINENLIEYLLENPSDSKFIIQKIINAAKVREAAR 386
Query: 469 QIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMF 506
+ R + K IL KL +C D SE++
Sbjct: 387 RAREINKKKSILDLGAL---PGKLSDCQENDPKFSEIY 421
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,087,603
Number of Sequences: 539616
Number of extensions: 10934757
Number of successful extensions: 35341
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 34668
Number of HSP's gapped (non-prelim): 570
length of query: 651
length of database: 191,569,459
effective HSP length: 124
effective length of query: 527
effective length of database: 124,657,075
effective search space: 65694278525
effective search space used: 65694278525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)