Query 006311
Match_columns 651
No_of_seqs 358 out of 2104
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 21:26:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1802 RNA helicase nonsense 100.0 3.1E-47 6.7E-52 417.3 27.0 371 244-650 235-664 (935)
2 KOG1803 DNA helicase [Replicat 100.0 8.7E-43 1.9E-47 382.6 15.6 314 302-637 55-435 (649)
3 TIGR00376 DNA helicase, putati 100.0 2.6E-40 5.6E-45 379.1 26.4 306 303-637 41-435 (637)
4 KOG1804 RNA helicase [RNA proc 100.0 9E-36 1.9E-40 340.5 7.2 360 240-649 158-529 (775)
5 KOG1805 DNA replication helica 100.0 3.6E-34 7.8E-39 325.9 17.3 194 422-637 668-872 (1100)
6 PF13086 AAA_11: AAA domain; P 100.0 1.2E-32 2.6E-37 272.5 12.4 177 423-613 1-236 (236)
7 PF13604 AAA_30: AAA domain; P 99.8 7.2E-19 1.6E-23 174.8 9.6 140 423-613 1-140 (196)
8 KOG1807 Helicases [Replication 99.7 1.3E-17 2.9E-22 187.2 10.3 89 539-631 694-783 (1025)
9 COG1112 Superfamily I DNA and 99.6 1.6E-15 3.6E-20 177.2 16.6 203 420-637 271-564 (767)
10 TIGR01447 recD exodeoxyribonuc 99.6 1E-15 2.2E-20 174.9 13.4 154 425-611 147-303 (586)
11 PRK10875 recD exonuclease V su 99.6 1.4E-15 3.1E-20 174.3 12.4 155 424-611 153-309 (615)
12 KOG1804 RNA helicase [RNA proc 99.6 4.5E-16 9.8E-21 179.4 1.4 252 366-629 63-326 (775)
13 TIGR01448 recD_rel helicase, p 99.6 2.6E-14 5.7E-19 167.2 14.2 140 421-612 321-461 (720)
14 TIGR02768 TraA_Ti Ti-type conj 99.5 4.2E-14 9.2E-19 165.9 12.4 136 422-613 351-486 (744)
15 PRK13889 conjugal transfer rel 99.5 1E-13 2.3E-18 165.4 12.0 134 422-611 345-478 (988)
16 PRK13826 Dtr system oriT relax 99.5 2.6E-13 5.6E-18 162.8 12.9 136 422-613 380-515 (1102)
17 PRK14712 conjugal transfer nic 99.4 2E-12 4.2E-17 159.3 12.8 141 422-613 834-977 (1623)
18 PRK13709 conjugal transfer nic 99.4 2.2E-12 4.9E-17 160.6 13.0 140 422-612 966-1108(1747)
19 KOG1806 DEAD box containing he 99.3 1.6E-12 3.4E-17 150.3 7.5 200 423-631 738-1062(1320)
20 TIGR02760 TraI_TIGR conjugativ 99.3 9E-12 2E-16 158.4 13.5 147 422-611 428-574 (1960)
21 TIGR02760 TraI_TIGR conjugativ 99.3 2.6E-11 5.6E-16 154.3 13.2 137 422-611 1018-1157(1960)
22 PF05970 PIF1: PIF1-like helic 99.2 1.8E-11 4E-16 132.8 9.3 68 423-497 1-72 (364)
23 PRK10919 ATP-dependent DNA hel 99.2 2.8E-11 6E-16 141.1 10.0 69 423-501 2-72 (672)
24 PRK11773 uvrD DNA-dependent he 99.2 6.9E-11 1.5E-15 138.9 9.6 70 422-501 8-79 (721)
25 KOG1801 tRNA-splicing endonucl 99.2 7.6E-11 1.7E-15 139.9 9.7 99 543-644 514-627 (827)
26 TIGR01075 uvrD DNA helicase II 99.1 9.4E-11 2E-15 137.6 9.3 70 422-501 3-74 (715)
27 PF02562 PhoH: PhoH-like prote 99.1 3.4E-10 7.3E-15 113.8 11.7 169 423-630 4-177 (205)
28 PF13245 AAA_19: Part of AAA d 99.1 1E-10 2.2E-15 99.8 6.8 59 431-496 2-62 (76)
29 TIGR01073 pcrA ATP-dependent D 99.1 2E-10 4.4E-15 135.0 10.4 69 422-500 3-73 (726)
30 TIGR01074 rep ATP-dependent DN 99.1 3.3E-10 7.2E-15 131.8 11.2 69 423-501 1-71 (664)
31 smart00487 DEXDc DEAD-like hel 99.1 7.8E-10 1.7E-14 105.2 11.7 160 422-605 7-172 (201)
32 PRK10536 hypothetical protein; 99.0 2.1E-09 4.5E-14 111.3 10.3 157 421-607 57-216 (262)
33 cd00046 DEXDc DEAD-like helica 99.0 4.9E-09 1.1E-13 93.8 10.9 118 443-583 2-120 (144)
34 PF04851 ResIII: Type III rest 98.8 5.9E-09 1.3E-13 99.6 5.8 145 423-583 3-163 (184)
35 PF00580 UvrD-helicase: UvrD/R 98.8 7.6E-09 1.6E-13 107.4 6.3 65 424-498 1-67 (315)
36 PF00270 DEAD: DEAD/DEAH box h 98.8 5.8E-08 1.2E-12 92.1 11.3 131 425-580 1-133 (169)
37 COG1875 NYN ribonuclease and A 98.8 2.7E-08 5.8E-13 106.4 9.4 194 417-634 222-415 (436)
38 COG0210 UvrD Superfamily I DNA 98.7 3E-08 6.6E-13 115.3 9.0 69 423-501 2-72 (655)
39 cd00268 DEADc DEAD-box helicas 98.6 2.6E-07 5.7E-12 90.9 10.7 135 422-582 20-159 (203)
40 COG4096 HsdR Type I site-speci 98.6 2E-07 4.3E-12 108.0 10.0 126 422-578 164-297 (875)
41 PF01443 Viral_helicase1: Vira 98.6 5.6E-08 1.2E-12 97.7 4.6 46 566-613 62-107 (234)
42 PF07652 Flavi_DEAD: Flaviviru 98.5 7.7E-07 1.7E-11 84.8 11.0 123 442-600 5-132 (148)
43 PRK05580 primosome assembly pr 98.5 7E-07 1.5E-11 104.7 12.3 128 422-578 143-270 (679)
44 PHA02558 uvsW UvsW helicase; P 98.5 1.1E-06 2.3E-11 99.7 13.3 125 422-583 113-239 (501)
45 PRK11448 hsdR type I restricti 98.4 1.9E-06 4.1E-11 105.6 12.4 132 422-579 412-553 (1123)
46 PRK11192 ATP-dependent RNA hel 98.4 2.4E-06 5.2E-11 94.6 12.2 131 422-580 22-161 (434)
47 PTZ00424 helicase 45; Provisio 98.3 4.2E-06 9E-11 91.2 13.2 133 422-580 49-184 (401)
48 TIGR00603 rad25 DNA repair hel 98.3 1.4E-05 3.1E-10 93.7 17.7 148 422-604 254-412 (732)
49 TIGR01970 DEAH_box_HrpB ATP-de 98.3 4.7E-06 1E-10 99.4 13.2 143 428-601 6-153 (819)
50 PF09848 DUF2075: Uncharacteri 98.3 1.8E-06 3.9E-11 93.4 8.9 51 443-498 3-53 (352)
51 COG1061 SSL2 DNA or RNA helica 98.3 4.1E-06 8.8E-11 93.6 11.5 128 421-584 34-164 (442)
52 PRK11664 ATP-dependent RNA hel 98.3 5.2E-06 1.1E-10 99.1 13.0 145 428-603 9-158 (812)
53 PRK01172 ski2-like helicase; P 98.3 6.3E-06 1.4E-10 96.6 13.5 148 422-600 21-175 (674)
54 PRK10917 ATP-dependent DNA hel 98.3 3.5E-06 7.7E-11 98.9 11.3 131 422-578 260-395 (681)
55 PRK11776 ATP-dependent RNA hel 98.3 4.3E-06 9.3E-11 93.4 11.4 134 422-580 25-161 (460)
56 PRK11054 helD DNA helicase IV; 98.3 9.4E-07 2E-11 103.5 6.3 70 422-501 195-266 (684)
57 COG1198 PriA Primosomal protei 98.3 3.9E-06 8.4E-11 98.2 10.9 127 422-577 197-324 (730)
58 TIGR00643 recG ATP-dependent D 98.3 3.5E-06 7.5E-11 98.1 10.5 130 422-577 234-368 (630)
59 PRK11634 ATP-dependent RNA hel 98.2 6.1E-06 1.3E-10 96.0 11.5 132 422-580 27-163 (629)
60 TIGR00580 mfd transcription-re 98.2 7.6E-06 1.6E-10 98.7 12.2 130 422-577 450-584 (926)
61 PRK10590 ATP-dependent RNA hel 98.2 9.9E-06 2.2E-10 90.7 11.7 134 422-582 22-165 (456)
62 PRK04837 ATP-dependent RNA hel 98.2 8.2E-06 1.8E-10 90.2 10.3 134 422-581 29-172 (423)
63 KOG0989 Replication factor C, 98.1 6.2E-06 1.3E-10 87.0 8.3 51 562-613 125-179 (346)
64 PRK02362 ski2-like helicase; P 98.1 2E-05 4.3E-10 93.4 13.0 129 422-580 22-151 (737)
65 cd00009 AAA The AAA+ (ATPases 98.1 5.4E-05 1.2E-09 68.3 11.8 59 425-490 3-61 (151)
66 PRK10689 transcription-repair 98.0 2.4E-05 5.1E-10 96.5 12.2 130 422-577 599-733 (1147)
67 TIGR00348 hsdR type I site-spe 98.0 5.6E-05 1.2E-09 88.8 14.4 151 424-603 239-402 (667)
68 PF00176 SNF2_N: SNF2 family N 98.0 1.1E-05 2.3E-10 83.6 6.6 156 427-609 1-178 (299)
69 PRK04537 ATP-dependent RNA hel 98.0 2.6E-05 5.6E-10 90.0 10.2 134 422-581 30-174 (572)
70 PRK13766 Hef nuclease; Provisi 98.0 5.7E-05 1.2E-09 89.8 12.9 132 423-584 15-149 (773)
71 PTZ00110 helicase; Provisional 98.0 3.7E-05 8E-10 88.2 10.8 135 422-581 151-292 (545)
72 PRK01297 ATP-dependent RNA hel 97.9 2.9E-05 6.2E-10 87.3 9.7 133 422-580 108-251 (475)
73 COG0507 RecD ATP-dependent exo 97.9 2.7E-05 5.9E-10 91.6 9.6 137 422-614 318-454 (696)
74 PRK09401 reverse gyrase; Revie 97.9 4.7E-05 1E-09 94.1 11.2 134 423-580 80-215 (1176)
75 TIGR00595 priA primosomal prot 97.9 2.6E-05 5.6E-10 88.7 8.2 106 445-579 1-106 (505)
76 COG4098 comFA Superfamily II D 97.9 5.6E-05 1.2E-09 80.7 10.0 122 415-576 90-212 (441)
77 PLN00206 DEAD-box ATP-dependen 97.9 6E-05 1.3E-09 85.9 10.6 134 422-580 142-284 (518)
78 TIGR01587 cas3_core CRISPR-ass 97.9 4.1E-05 8.9E-10 82.4 8.5 52 444-500 2-53 (358)
79 COG3972 Superfamily I DNA and 97.9 2.5E-05 5.4E-10 86.6 6.7 156 423-606 162-334 (660)
80 PRK00254 ski2-like helicase; P 97.8 9E-05 1.9E-09 87.7 11.1 130 422-580 22-152 (720)
81 TIGR01054 rgy reverse gyrase. 97.8 8.7E-05 1.9E-09 91.8 10.8 132 423-580 78-213 (1171)
82 smart00488 DEXDc2 DEAD-like he 97.8 0.00019 4E-09 76.1 11.9 69 425-498 10-83 (289)
83 smart00489 DEXDc3 DEAD-like he 97.8 0.00019 4E-09 76.1 11.9 69 425-498 10-83 (289)
84 TIGR01967 DEAH_box_HrpA ATP-de 97.7 0.00013 2.9E-09 90.1 11.0 147 427-603 70-220 (1283)
85 TIGR03817 DECH_helic helicase/ 97.7 0.00014 3.1E-09 86.4 10.5 132 422-580 35-171 (742)
86 PLN03025 replication factor C 97.7 0.00024 5.2E-09 76.0 10.8 41 425-471 18-58 (319)
87 PRK13767 ATP-dependent helicas 97.6 9.9E-05 2.1E-09 89.2 8.0 144 423-580 32-186 (876)
88 PRK11131 ATP-dependent RNA hel 97.6 0.00032 7E-09 86.7 11.9 146 428-603 78-227 (1294)
89 PRK04296 thymidine kinase; Pro 97.6 8.1E-05 1.7E-09 73.9 5.5 35 443-484 4-38 (190)
90 TIGR00614 recQ_fam ATP-depende 97.6 0.00019 4E-09 80.8 8.7 127 422-580 10-141 (470)
91 PRK14701 reverse gyrase; Provi 97.6 0.00024 5.1E-09 90.3 10.4 133 423-580 79-214 (1638)
92 PRK14712 conjugal transfer nic 97.6 0.00041 8.8E-09 87.3 12.3 128 423-608 281-409 (1623)
93 PHA02653 RNA helicase NPH-II; 97.5 0.00039 8.5E-09 81.6 10.9 65 426-498 167-244 (675)
94 TIGR02785 addA_Gpos recombinat 97.5 0.00014 3.1E-09 90.7 7.6 66 423-498 1-67 (1232)
95 COG1111 MPH1 ERCC4-like helica 97.5 0.00045 9.7E-09 77.1 10.3 134 425-589 17-154 (542)
96 COG1702 PhoH Phosphate starvat 97.5 0.0003 6.4E-09 75.5 7.9 178 423-631 128-327 (348)
97 KOG0354 DEAD-box like helicase 97.4 0.00074 1.6E-08 78.9 11.4 133 421-581 60-194 (746)
98 COG0513 SrmB Superfamily II DN 97.4 0.00049 1.1E-08 78.6 9.3 135 422-581 50-189 (513)
99 COG2256 MGS1 ATPase related to 97.4 0.00057 1.2E-08 74.8 9.2 42 566-611 104-147 (436)
100 KOG0991 Replication factor C, 97.4 0.00048 1E-08 70.6 7.9 42 425-471 32-73 (333)
101 PRK04914 ATP-dependent helicas 97.4 0.0016 3.6E-08 79.0 13.5 161 422-609 151-321 (956)
102 PRK14088 dnaA chromosomal repl 97.4 0.0014 3.1E-08 73.4 12.2 55 425-484 113-168 (440)
103 PRK08181 transposase; Validate 97.4 0.0016 3.5E-08 68.5 11.7 64 422-497 86-150 (269)
104 COG1204 Superfamily II helicas 97.3 0.00086 1.9E-08 79.8 10.6 137 423-588 31-174 (766)
105 KOG4284 DEAD box protein [Tran 97.3 0.00015 3.2E-09 82.5 3.8 135 425-584 49-185 (980)
106 PRK09694 helicase Cas3; Provis 97.3 0.00097 2.1E-08 80.3 10.6 69 422-498 285-353 (878)
107 COG1643 HrpA HrpA-like helicas 97.3 0.0011 2.4E-08 79.2 10.3 132 427-588 53-185 (845)
108 TIGR01407 dinG_rel DnaQ family 97.3 0.00054 1.2E-08 82.7 7.8 66 423-495 245-311 (850)
109 PF13401 AAA_22: AAA domain; P 97.2 0.0002 4.3E-09 65.3 3.0 53 441-498 4-60 (131)
110 TIGR02621 cas3_GSU0051 CRISPR- 97.2 0.00066 1.4E-08 80.9 7.9 68 424-498 16-84 (844)
111 PRK12402 replication factor C 97.2 0.0029 6.4E-08 67.2 12.1 42 425-472 20-61 (337)
112 PRK13709 conjugal transfer nic 97.2 0.0022 4.7E-08 81.9 12.3 126 425-607 415-541 (1747)
113 PRK11057 ATP-dependent DNA hel 97.2 0.001 2.2E-08 77.4 8.9 64 422-498 24-87 (607)
114 PRK06526 transposase; Provisio 97.2 0.0014 3E-08 68.4 8.5 53 422-481 79-131 (254)
115 PRK14956 DNA polymerase III su 97.2 0.001 2.2E-08 75.0 8.1 48 565-613 120-171 (484)
116 COG1110 Reverse gyrase [DNA re 97.1 0.0013 2.8E-08 78.4 8.9 126 424-575 83-212 (1187)
117 COG1200 RecG RecG-like helicas 97.1 0.0016 3.4E-08 75.3 9.1 132 422-577 261-395 (677)
118 TIGR03158 cas3_cyano CRISPR-as 97.1 0.003 6.4E-08 68.9 10.9 61 428-499 2-62 (357)
119 TIGR01389 recQ ATP-dependent D 97.1 0.0019 4.1E-08 74.8 9.6 128 422-579 12-140 (591)
120 TIGR03015 pepcterm_ATPase puta 97.1 0.0028 6E-08 65.3 9.6 42 425-472 25-68 (269)
121 PRK14974 cell division protein 97.0 0.0036 7.8E-08 67.9 10.7 45 441-492 140-187 (336)
122 PRK07246 bifunctional ATP-depe 97.0 0.0021 4.5E-08 77.3 9.8 63 423-495 245-310 (820)
123 PLN03142 Probable chromatin-re 97.0 0.0027 5.8E-08 77.6 10.7 162 422-606 168-332 (1033)
124 COG0470 HolB ATPase involved i 97.0 0.0016 3.5E-08 68.5 7.8 49 564-613 107-159 (325)
125 PRK14958 DNA polymerase III su 97.0 0.0036 7.9E-08 71.5 10.6 48 565-613 118-169 (509)
126 PRK00411 cdc6 cell division co 96.9 0.0028 6E-08 69.2 8.8 69 425-498 35-108 (394)
127 PRK12899 secA preprotein trans 96.9 0.003 6.5E-08 75.8 9.5 135 424-587 93-236 (970)
128 PRK14873 primosome assembly pr 96.9 0.002 4.3E-08 75.7 7.7 106 444-577 163-268 (665)
129 PRK12422 chromosomal replicati 96.9 0.0056 1.2E-07 68.8 11.0 35 442-483 142-176 (445)
130 PRK14962 DNA polymerase III su 96.9 0.0038 8.3E-08 70.6 9.6 41 427-473 21-62 (472)
131 PRK07994 DNA polymerase III su 96.9 0.0022 4.7E-08 75.0 7.6 48 565-613 118-169 (647)
132 PRK00440 rfc replication facto 96.9 0.0093 2E-07 62.7 11.8 41 425-471 22-62 (319)
133 TIGR00362 DnaA chromosomal rep 96.8 0.0064 1.4E-07 67.2 10.8 37 442-483 137-173 (405)
134 PRK14087 dnaA chromosomal repl 96.8 0.0063 1.4E-07 68.5 10.9 39 441-484 141-179 (450)
135 PRK12323 DNA polymerase III su 96.8 0.0059 1.3E-07 71.2 10.4 49 565-614 123-175 (700)
136 PRK13342 recombination factor 96.8 0.005 1.1E-07 68.4 9.6 32 432-469 27-58 (413)
137 PF02399 Herpes_ori_bp: Origin 96.8 0.002 4.3E-08 76.0 6.6 52 441-498 49-100 (824)
138 PHA02544 44 clamp loader, smal 96.8 0.0073 1.6E-07 64.0 10.3 42 422-469 23-65 (316)
139 PRK08074 bifunctional ATP-depe 96.8 0.0057 1.2E-07 74.6 10.3 64 423-495 257-324 (928)
140 PRK04195 replication factor C 96.7 0.0096 2.1E-07 67.5 11.4 41 423-469 17-61 (482)
141 PF13173 AAA_14: AAA domain 96.7 0.0074 1.6E-07 55.8 8.6 35 566-602 61-97 (128)
142 PRK14969 DNA polymerase III su 96.7 0.012 2.7E-07 67.5 12.0 48 565-613 118-169 (527)
143 TIGR00609 recB exodeoxyribonuc 96.7 0.0018 3.9E-08 80.2 5.1 54 441-499 9-65 (1087)
144 PRK13341 recombination factor 96.6 0.0079 1.7E-07 71.4 9.8 34 431-470 42-75 (725)
145 smart00382 AAA ATPases associa 96.6 0.0014 3.1E-08 58.1 2.6 47 441-494 2-48 (148)
146 PF05127 Helicase_RecD: Helica 96.6 0.00088 1.9E-08 66.3 1.3 48 445-498 1-48 (177)
147 PRK07952 DNA replication prote 96.5 0.0056 1.2E-07 63.6 7.2 52 425-483 78-134 (244)
148 PRK14949 DNA polymerase III su 96.5 0.003 6.4E-08 75.7 5.7 48 565-613 118-169 (944)
149 TIGR00604 rad3 DNA repair heli 96.5 0.007 1.5E-07 71.7 8.7 70 424-498 11-82 (705)
150 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.011 2.3E-07 57.7 8.4 126 442-603 3-137 (159)
151 PRK14963 DNA polymerase III su 96.5 0.019 4.1E-07 65.7 11.7 48 565-613 115-166 (504)
152 TIGR02640 gas_vesic_GvpN gas v 96.5 0.004 8.6E-08 65.0 5.7 39 425-469 4-43 (262)
153 TIGR03714 secA2 accessory Sec 96.5 0.017 3.8E-07 68.5 11.5 147 423-605 68-224 (762)
154 KOG0987 DNA helicase PIF1/RRM3 96.5 0.0076 1.6E-07 69.4 8.4 61 422-489 116-178 (540)
155 PRK07003 DNA polymerase III su 96.5 0.017 3.6E-07 68.4 11.1 48 565-613 118-169 (830)
156 PRK14086 dnaA chromosomal repl 96.5 0.022 4.7E-07 66.3 11.9 39 441-484 314-352 (617)
157 PRK14961 DNA polymerase III su 96.4 0.0085 1.8E-07 65.5 8.2 49 565-613 118-169 (363)
158 PRK14964 DNA polymerase III su 96.4 0.016 3.4E-07 65.9 10.5 48 565-613 115-166 (491)
159 PRK05896 DNA polymerase III su 96.4 0.0069 1.5E-07 70.2 7.6 42 426-473 22-64 (605)
160 PHA03333 putative ATPase subun 96.4 0.03 6.4E-07 65.5 12.5 158 430-608 176-336 (752)
161 PRK14960 DNA polymerase III su 96.4 0.0049 1.1E-07 71.9 6.3 48 565-613 117-168 (702)
162 PRK05563 DNA polymerase III su 96.4 0.024 5.3E-07 65.5 12.0 48 565-613 118-169 (559)
163 PRK07940 DNA polymerase III su 96.4 0.0056 1.2E-07 67.8 6.5 49 565-613 116-167 (394)
164 PRK08691 DNA polymerase III su 96.4 0.0086 1.9E-07 70.3 8.2 48 565-613 118-169 (709)
165 PRK14952 DNA polymerase III su 96.4 0.014 3E-07 67.8 9.8 48 565-613 117-168 (584)
166 PRK14970 DNA polymerase III su 96.4 0.028 6.1E-07 61.2 11.7 43 424-472 21-64 (367)
167 COG4889 Predicted helicase [Ge 96.4 0.0094 2E-07 70.3 8.2 147 421-579 159-317 (1518)
168 PRK11747 dinG ATP-dependent DN 96.4 0.014 3.1E-07 69.1 10.0 66 424-495 26-97 (697)
169 TIGR02784 addA_alphas double-s 96.3 0.0038 8.3E-08 77.7 5.3 54 441-499 10-64 (1141)
170 KOG0920 ATP-dependent RNA heli 96.3 0.02 4.3E-07 69.0 10.8 144 427-600 176-325 (924)
171 KOG0331 ATP-dependent RNA heli 96.3 0.012 2.6E-07 66.9 8.4 132 423-579 113-252 (519)
172 cd01124 KaiC KaiC is a circadi 96.3 0.0055 1.2E-07 59.4 5.1 46 444-497 2-47 (187)
173 PRK12723 flagellar biosynthesi 96.3 0.04 8.6E-07 61.1 12.2 46 441-491 174-224 (388)
174 TIGR00678 holB DNA polymerase 96.3 0.0088 1.9E-07 58.7 6.4 49 565-613 95-146 (188)
175 PRK14948 DNA polymerase III su 96.3 0.028 6.1E-07 65.8 11.6 39 429-473 25-64 (620)
176 KOG0744 AAA+-type ATPase [Post 96.3 0.0025 5.5E-08 68.1 2.6 26 441-472 177-202 (423)
177 PRK08084 DNA replication initi 96.2 0.011 2.4E-07 60.6 7.2 54 424-484 28-81 (235)
178 PF07728 AAA_5: AAA domain (dy 96.2 0.0034 7.5E-08 58.3 3.1 23 443-471 1-23 (139)
179 PRK07133 DNA polymerase III su 96.2 0.019 4.1E-07 67.9 9.7 48 565-613 117-168 (725)
180 KOG0952 DNA/RNA helicase MER3/ 96.2 0.01 2.3E-07 71.1 7.5 140 422-588 109-265 (1230)
181 PF00004 AAA: ATPase family as 96.2 0.0025 5.4E-08 57.7 1.8 22 444-471 1-22 (132)
182 PF00448 SRP54: SRP54-type pro 96.2 0.0051 1.1E-07 61.7 4.1 37 443-486 3-40 (196)
183 PRK14965 DNA polymerase III su 96.2 0.029 6.2E-07 65.2 10.8 48 565-613 118-169 (576)
184 PRK14957 DNA polymerase III su 96.2 0.01 2.2E-07 68.4 7.0 38 430-473 26-64 (546)
185 PRK14951 DNA polymerase III su 96.1 0.017 3.6E-07 67.5 8.8 48 565-613 123-174 (618)
186 PF00308 Bac_DnaA: Bacterial d 96.1 0.015 3.2E-07 59.3 7.4 56 423-483 14-71 (219)
187 COG1222 RPT1 ATP-dependent 26S 96.1 0.0051 1.1E-07 66.7 4.2 66 425-507 156-234 (406)
188 KOG0743 AAA+-type ATPase [Post 96.1 0.0043 9.4E-08 68.9 3.7 81 417-507 198-291 (457)
189 KOG0328 Predicted ATP-dependen 96.1 0.0069 1.5E-07 63.6 5.0 154 423-602 49-208 (400)
190 PRK08058 DNA polymerase III su 96.1 0.014 3.1E-07 62.9 7.7 49 565-613 109-160 (329)
191 COG1205 Distinct helicase fami 96.1 0.032 6.9E-07 67.5 11.3 132 422-576 69-205 (851)
192 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.011 2.4E-07 59.3 6.2 57 423-486 20-76 (226)
193 KOG0345 ATP-dependent RNA heli 96.1 0.049 1.1E-06 60.8 11.5 132 422-580 27-171 (567)
194 PRK12377 putative replication 96.1 0.0091 2E-07 62.2 5.7 51 425-482 80-135 (248)
195 PRK07764 DNA polymerase III su 96.1 0.015 3.2E-07 70.1 8.1 48 565-613 119-170 (824)
196 PLN03137 ATP-dependent DNA hel 96.0 0.018 3.9E-07 70.7 8.8 65 421-498 458-522 (1195)
197 PRK05986 cob(I)alamin adenolsy 96.0 0.024 5.2E-07 56.9 8.1 126 441-602 22-156 (191)
198 TIGR03117 cas_csf4 CRISPR-asso 96.0 0.014 3E-07 68.3 7.2 66 427-497 1-67 (636)
199 PTZ00112 origin recognition co 96.0 0.03 6.4E-07 67.2 9.9 41 425-470 760-805 (1164)
200 KOG0350 DEAD-box ATP-dependent 96.0 0.028 6E-07 63.1 9.0 124 441-581 183-310 (620)
201 PRK05707 DNA polymerase III su 95.9 0.041 8.8E-07 59.6 9.9 49 565-613 105-156 (328)
202 PRK10876 recB exonuclease V su 95.9 0.0081 1.8E-07 75.0 5.1 52 442-498 18-79 (1181)
203 KOG0922 DEAH-box RNA helicase 95.9 0.042 9E-07 63.6 10.2 54 440-499 65-118 (674)
204 PRK06647 DNA polymerase III su 95.9 0.022 4.7E-07 66.0 8.0 43 425-473 21-64 (563)
205 KOG0330 ATP-dependent RNA heli 95.8 0.016 3.5E-07 63.2 6.4 157 423-604 83-245 (476)
206 COG1201 Lhr Lhr-like helicases 95.8 0.037 8E-07 66.2 10.0 131 422-579 21-162 (814)
207 PRK06893 DNA replication initi 95.8 0.019 4.2E-07 58.6 6.8 37 441-484 39-75 (229)
208 KOG0390 DNA repair protein, SN 95.8 0.074 1.6E-06 63.2 12.2 165 421-605 236-416 (776)
209 KOG0335 ATP-dependent RNA heli 95.8 0.016 3.5E-07 65.1 6.5 135 422-580 95-240 (482)
210 PRK08451 DNA polymerase III su 95.8 0.036 7.7E-07 63.8 9.3 48 565-613 116-167 (535)
211 PRK07471 DNA polymerase III su 95.8 0.029 6.4E-07 61.6 8.3 48 565-613 140-191 (365)
212 PF05496 RuvB_N: Holliday junc 95.7 0.0061 1.3E-07 62.6 2.5 26 441-472 50-75 (233)
213 COG1203 CRISPR-associated heli 95.7 0.025 5.4E-07 67.5 8.0 77 417-498 189-268 (733)
214 PRK08903 DnaA regulatory inact 95.7 0.022 4.8E-07 57.6 6.5 54 423-483 23-77 (227)
215 PRK12898 secA preprotein trans 95.7 0.055 1.2E-06 63.5 10.4 65 422-498 102-166 (656)
216 PRK00771 signal recognition pa 95.7 0.044 9.5E-07 61.6 9.2 35 442-483 96-130 (437)
217 PRK14959 DNA polymerase III su 95.7 0.045 9.7E-07 63.9 9.5 42 425-472 21-63 (624)
218 TIGR00635 ruvB Holliday juncti 95.6 0.016 3.6E-07 61.0 5.5 40 427-472 11-55 (305)
219 PF00580 UvrD-helicase: UvrD/R 95.6 0.0064 1.4E-07 63.2 2.3 58 566-631 256-313 (315)
220 TIGR02928 orc1/cdc6 family rep 95.6 0.033 7.2E-07 60.1 7.9 42 425-471 20-65 (365)
221 TIGR02881 spore_V_K stage V sp 95.6 0.008 1.7E-07 62.5 2.9 26 441-472 42-67 (261)
222 PRK08116 hypothetical protein; 95.6 0.042 9E-07 57.8 8.1 53 424-483 89-149 (268)
223 COG1484 DnaC DNA replication p 95.5 0.027 5.8E-07 58.8 6.5 54 424-484 84-141 (254)
224 PRK09112 DNA polymerase III su 95.5 0.04 8.7E-07 60.2 8.1 50 564-613 139-191 (351)
225 PF03237 Terminase_6: Terminas 95.5 0.053 1.1E-06 57.2 8.8 45 445-494 1-46 (384)
226 PRK13909 putative recombinatio 95.4 0.019 4.2E-07 70.0 5.7 50 445-499 2-52 (910)
227 COG0714 MoxR-like ATPases [Gen 95.4 0.02 4.3E-07 61.6 5.2 50 441-498 43-92 (329)
228 PRK09200 preprotein translocas 95.4 0.081 1.7E-06 63.4 10.6 125 445-604 95-227 (790)
229 PF13191 AAA_16: AAA ATPase do 95.4 0.022 4.8E-07 54.6 5.0 43 426-473 6-51 (185)
230 COG1074 RecB ATP-dependent exo 95.4 0.019 4.2E-07 71.5 5.6 53 441-498 16-71 (1139)
231 PRK14953 DNA polymerase III su 95.4 0.068 1.5E-06 60.9 9.5 25 442-472 39-63 (486)
232 KOG2028 ATPase related to the 95.3 0.027 5.8E-07 61.3 5.9 58 428-492 149-206 (554)
233 COG0467 RAD55 RecA-superfamily 95.3 0.025 5.4E-07 58.6 5.6 50 439-495 21-70 (260)
234 COG1419 FlhF Flagellar GTP-bin 95.3 0.057 1.2E-06 59.7 8.4 38 441-483 203-240 (407)
235 COG1199 DinG Rad3-related DNA 95.2 0.056 1.2E-06 63.3 8.7 71 422-498 14-85 (654)
236 PRK00149 dnaA chromosomal repl 95.2 0.049 1.1E-06 61.2 7.7 56 424-484 129-186 (450)
237 TIGR00708 cobA cob(I)alamin ad 95.2 0.093 2E-06 51.9 8.7 37 441-484 5-41 (173)
238 PRK09111 DNA polymerase III su 95.2 0.066 1.4E-06 62.5 8.9 42 425-472 29-71 (598)
239 PRK14950 DNA polymerase III su 95.1 0.038 8.2E-07 64.3 6.7 42 425-472 21-63 (585)
240 PF13177 DNA_pol3_delta2: DNA 95.1 0.083 1.8E-06 51.2 8.0 49 565-613 101-152 (162)
241 smart00763 AAA_PrkA PrkA AAA d 95.1 0.043 9.2E-07 60.1 6.6 28 440-473 77-104 (361)
242 TIGR01547 phage_term_2 phage t 95.1 0.086 1.9E-06 58.0 9.1 132 443-605 3-142 (396)
243 PRK08769 DNA polymerase III su 95.1 0.062 1.3E-06 58.0 7.8 49 565-613 112-163 (319)
244 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.045 9.7E-07 56.1 6.4 60 431-498 9-70 (237)
245 PF01695 IstB_IS21: IstB-like 95.1 0.025 5.5E-07 55.8 4.4 46 440-497 46-91 (178)
246 PHA02533 17 large terminase pr 95.1 0.35 7.5E-06 55.9 14.2 148 422-604 58-210 (534)
247 COG3854 SpoIIIAA ncharacterize 95.1 0.058 1.3E-06 55.7 6.9 62 566-631 218-279 (308)
248 PRK03992 proteasome-activating 95.0 0.025 5.5E-07 62.4 4.7 44 422-471 133-189 (389)
249 COG1197 Mfd Transcription-repa 95.0 0.1 2.3E-06 63.9 10.2 130 422-577 593-727 (1139)
250 TIGR02880 cbbX_cfxQ probable R 95.0 0.013 2.9E-07 61.9 2.5 25 443-473 60-84 (284)
251 PRK11889 flhF flagellar biosyn 95.0 0.07 1.5E-06 59.3 7.9 46 441-493 241-289 (436)
252 cd01120 RecA-like_NTPases RecA 95.0 0.039 8.5E-07 51.1 5.2 41 444-491 2-42 (165)
253 PRK09183 transposase/IS protei 95.0 0.037 8E-07 57.9 5.5 55 422-483 83-137 (259)
254 COG1474 CDC6 Cdc6-related prot 94.9 0.072 1.6E-06 58.6 7.9 71 425-500 22-97 (366)
255 PF01078 Mg_chelatase: Magnesi 94.9 0.025 5.5E-07 57.3 3.9 41 425-473 8-48 (206)
256 PRK00080 ruvB Holliday junctio 94.9 0.03 6.5E-07 60.2 4.7 42 425-472 30-76 (328)
257 PRK10867 signal recognition pa 94.9 0.11 2.4E-06 58.4 9.2 42 442-489 101-143 (433)
258 PRK05564 DNA polymerase III su 94.9 0.23 4.9E-06 53.1 11.3 49 565-613 92-143 (313)
259 TIGR01241 FtsH_fam ATP-depende 94.8 0.045 9.7E-07 62.3 6.2 47 417-469 52-110 (495)
260 TIGR00963 secA preprotein tran 94.8 0.1 2.2E-06 62.0 9.0 117 445-588 73-198 (745)
261 PRK13833 conjugal transfer pro 94.8 0.054 1.2E-06 58.6 6.3 54 422-482 127-180 (323)
262 KOG0923 mRNA splicing factor A 94.8 0.092 2E-06 60.8 8.2 55 441-500 280-334 (902)
263 TIGR03880 KaiC_arch_3 KaiC dom 94.7 0.068 1.5E-06 53.9 6.6 59 432-498 5-65 (224)
264 PRK06851 hypothetical protein; 94.7 0.022 4.8E-07 62.5 3.2 51 441-496 30-80 (367)
265 PRK13531 regulatory ATPase Rav 94.7 0.032 6.9E-07 63.3 4.5 39 428-472 25-64 (498)
266 PRK13104 secA preprotein trans 94.7 0.055 1.2E-06 65.1 6.7 113 445-583 99-219 (896)
267 PRK08727 hypothetical protein; 94.7 0.062 1.3E-06 55.1 6.1 37 440-483 40-76 (233)
268 PRK13894 conjugal transfer ATP 94.6 0.065 1.4E-06 57.9 6.5 56 423-485 132-187 (319)
269 COG1435 Tdk Thymidine kinase [ 94.6 0.13 2.8E-06 51.9 8.0 34 567-601 83-117 (201)
270 TIGR01425 SRP54_euk signal rec 94.6 0.14 3E-06 57.5 9.1 39 442-487 101-140 (429)
271 PRK05703 flhF flagellar biosyn 94.6 0.23 4.9E-06 55.7 10.9 40 442-486 222-262 (424)
272 KOG0738 AAA+-type ATPase [Post 94.5 0.018 3.9E-07 63.0 2.0 49 443-508 247-295 (491)
273 CHL00181 cbbX CbbX; Provisiona 94.5 0.022 4.9E-07 60.4 2.5 25 443-473 61-85 (287)
274 KOG0348 ATP-dependent RNA heli 94.4 0.14 3E-06 58.2 8.5 134 422-580 158-301 (708)
275 TIGR01242 26Sp45 26S proteasom 94.4 0.034 7.4E-07 60.6 3.8 23 443-471 158-180 (364)
276 PRK06067 flagellar accessory p 94.4 0.088 1.9E-06 53.6 6.6 60 431-498 13-74 (234)
277 PHA03368 DNA packaging termina 94.4 0.4 8.7E-06 56.3 12.4 131 441-603 254-389 (738)
278 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.056 1.2E-06 56.4 5.1 49 440-496 35-83 (259)
279 COG4581 Superfamily II RNA hel 94.3 0.23 5.1E-06 60.7 10.7 124 422-580 118-243 (1041)
280 TIGR01650 PD_CobS cobaltochela 94.3 0.064 1.4E-06 58.1 5.5 43 422-472 47-89 (327)
281 COG2255 RuvB Holliday junction 94.3 0.068 1.5E-06 56.7 5.5 27 440-472 51-77 (332)
282 PRK05642 DNA replication initi 94.3 0.077 1.7E-06 54.5 5.8 37 441-484 45-81 (234)
283 PRK06871 DNA polymerase III su 94.2 0.16 3.5E-06 55.1 8.4 50 564-613 105-157 (325)
284 PF05729 NACHT: NACHT domain 94.2 0.061 1.3E-06 50.3 4.6 27 443-474 2-28 (166)
285 TIGR03689 pup_AAA proteasome A 94.2 0.051 1.1E-06 62.2 4.8 26 441-472 216-241 (512)
286 PF13207 AAA_17: AAA domain; P 94.2 0.027 5.9E-07 50.7 2.0 22 444-471 2-23 (121)
287 PRK04328 hypothetical protein; 94.1 0.086 1.9E-06 54.6 5.9 59 431-497 11-71 (249)
288 TIGR02782 TrbB_P P-type conjug 94.1 0.095 2.1E-06 56.0 6.3 53 423-483 116-169 (299)
289 TIGR02012 tigrfam_recA protein 94.1 0.094 2E-06 56.7 6.3 58 431-495 42-102 (321)
290 KOG0342 ATP-dependent RNA heli 94.1 0.099 2.1E-06 58.7 6.5 136 422-580 103-244 (543)
291 PRK06835 DNA replication prote 94.0 0.095 2.1E-06 56.9 6.2 36 441-483 183-218 (329)
292 KOG0727 26S proteasome regulat 94.0 0.12 2.5E-06 54.1 6.5 15 441-455 189-203 (408)
293 PTZ00454 26S protease regulato 94.0 0.055 1.2E-06 60.1 4.4 47 418-470 143-202 (398)
294 cd01983 Fer4_NifH The Fer4_Nif 94.0 0.32 6.9E-06 40.9 8.2 33 444-483 2-34 (99)
295 PF06745 KaiC: KaiC; InterPro 94.0 0.073 1.6E-06 53.7 4.9 60 432-498 8-69 (226)
296 PHA02244 ATPase-like protein 93.9 0.066 1.4E-06 58.9 4.8 25 441-471 119-143 (383)
297 PRK05973 replicative DNA helic 93.9 0.11 2.3E-06 54.0 5.9 51 440-498 63-113 (237)
298 TIGR00631 uvrb excinuclease AB 93.9 0.28 6E-06 58.0 10.1 75 424-508 10-86 (655)
299 PF00158 Sigma54_activat: Sigm 93.9 0.12 2.5E-06 50.7 6.0 52 440-498 21-72 (168)
300 PRK09361 radB DNA repair and r 93.9 0.087 1.9E-06 53.2 5.2 48 431-485 11-60 (225)
301 KOG0926 DEAH-box RNA helicase 93.9 0.17 3.6E-06 59.8 8.0 119 441-587 271-394 (1172)
302 cd01394 radB RadB. The archaea 93.8 0.089 1.9E-06 52.8 5.2 46 431-483 7-54 (218)
303 PRK12727 flagellar biosynthesi 93.8 0.13 2.8E-06 59.1 6.9 38 441-483 350-387 (559)
304 TIGR02902 spore_lonB ATP-depen 93.8 0.076 1.7E-06 61.1 5.3 40 427-472 72-111 (531)
305 COG3973 Superfamily I DNA and 93.8 0.095 2.1E-06 60.3 5.8 56 423-487 212-271 (747)
306 cd01129 PulE-GspE PulE/GspE Th 93.8 0.098 2.1E-06 54.9 5.6 52 423-482 63-114 (264)
307 TIGR02237 recomb_radB DNA repa 93.8 0.1 2.2E-06 51.9 5.5 40 440-486 11-50 (209)
308 PRK07399 DNA polymerase III su 93.8 0.53 1.1E-05 50.7 11.2 49 565-613 123-173 (314)
309 PRK06620 hypothetical protein; 93.8 0.061 1.3E-06 54.6 3.9 37 425-467 24-64 (214)
310 cd00984 DnaB_C DnaB helicase C 93.8 0.13 2.9E-06 52.1 6.4 50 441-497 13-62 (242)
311 PRK08533 flagellar accessory p 93.7 0.1 2.2E-06 53.6 5.4 48 441-496 24-71 (230)
312 PRK09751 putative ATP-dependen 93.7 0.096 2.1E-06 66.6 6.2 122 446-580 1-138 (1490)
313 PF13481 AAA_25: AAA domain; P 93.7 0.085 1.9E-06 51.5 4.7 52 441-498 32-91 (193)
314 PTZ00361 26 proteosome regulat 93.7 0.067 1.5E-06 60.2 4.4 25 442-472 218-242 (438)
315 cd01130 VirB11-like_ATPase Typ 93.6 0.1 2.2E-06 51.5 5.1 50 422-481 8-57 (186)
316 cd00983 recA RecA is a bacter 93.6 0.14 3E-06 55.6 6.4 52 431-489 42-96 (325)
317 KOG0389 SNF2 family DNA-depend 93.5 0.16 3.5E-06 59.9 7.1 162 422-605 398-564 (941)
318 COG4178 ABC-type uncharacteriz 93.5 0.11 2.3E-06 60.4 5.6 37 566-602 533-572 (604)
319 cd03115 SRP The signal recogni 93.5 0.08 1.7E-06 51.1 4.0 33 444-483 3-35 (173)
320 PHA03372 DNA packaging termina 93.4 0.51 1.1E-05 54.8 10.8 133 449-610 210-346 (668)
321 PF06309 Torsin: Torsin; Inte 93.4 0.11 2.3E-06 49.0 4.5 65 428-498 30-111 (127)
322 PRK13407 bchI magnesium chelat 93.4 0.07 1.5E-06 58.0 3.7 38 428-471 13-53 (334)
323 PRK11331 5-methylcytosine-spec 93.4 0.16 3.4E-06 57.3 6.6 64 423-494 178-243 (459)
324 PRK08939 primosomal protein Dn 93.3 0.12 2.5E-06 55.6 5.3 36 441-483 156-191 (306)
325 TIGR02397 dnaX_nterm DNA polym 93.3 0.11 2.3E-06 55.8 5.0 45 423-473 17-62 (355)
326 TIGR02655 circ_KaiC circadian 93.3 0.14 3.1E-06 58.2 6.2 60 430-497 250-311 (484)
327 KOG0731 AAA+-type ATPase conta 93.2 0.065 1.4E-06 63.5 3.4 43 543-585 449-491 (774)
328 PRK14971 DNA polymerase III su 93.2 0.77 1.7E-05 53.9 12.3 49 565-613 120-171 (614)
329 PF00931 NB-ARC: NB-ARC domain 93.2 0.1 2.2E-06 54.1 4.6 66 427-498 3-72 (287)
330 KOG0651 26S proteasome regulat 93.2 0.058 1.3E-06 57.8 2.7 26 441-472 166-191 (388)
331 PRK14955 DNA polymerase III su 93.2 0.1 2.2E-06 57.9 4.7 43 425-473 21-64 (397)
332 KOG0344 ATP-dependent RNA heli 93.1 0.22 4.8E-06 57.0 7.3 135 425-581 160-303 (593)
333 PRK06921 hypothetical protein; 93.1 0.098 2.1E-06 55.0 4.3 38 441-484 117-154 (266)
334 KOG0385 Chromatin remodeling c 93.1 0.31 6.7E-06 57.5 8.6 162 422-605 166-329 (971)
335 PRK05298 excinuclease ABC subu 93.0 0.26 5.6E-06 58.2 8.1 75 421-505 10-86 (652)
336 PRK14722 flhF flagellar biosyn 93.0 0.11 2.4E-06 57.2 4.7 38 441-483 137-174 (374)
337 cd01131 PilT Pilus retraction 93.0 0.1 2.3E-06 52.1 4.0 36 442-483 2-37 (198)
338 PHA00729 NTP-binding motif con 93.0 0.062 1.4E-06 55.3 2.4 23 442-470 18-40 (226)
339 PF13671 AAA_33: AAA domain; P 92.9 0.049 1.1E-06 50.3 1.5 19 444-468 2-20 (143)
340 PHA02624 large T antigen; Prov 92.9 0.12 2.6E-06 60.0 5.0 41 426-472 415-456 (647)
341 TIGR01359 UMP_CMP_kin_fam UMP- 92.9 0.066 1.4E-06 52.0 2.4 21 444-470 2-22 (183)
342 KOG0728 26S proteasome regulat 92.9 0.088 1.9E-06 54.9 3.4 50 441-507 181-230 (404)
343 TIGR03881 KaiC_arch_4 KaiC dom 92.8 0.23 5E-06 50.2 6.4 56 432-495 9-66 (229)
344 KOG0741 AAA+-type ATPase [Post 92.8 0.077 1.7E-06 60.2 3.1 25 443-473 258-282 (744)
345 KOG0736 Peroxisome assembly fa 92.8 0.059 1.3E-06 63.4 2.3 22 441-468 705-726 (953)
346 COG2804 PulE Type II secretory 92.8 0.14 3.1E-06 58.0 5.1 45 422-472 240-284 (500)
347 COG0556 UvrB Helicase subunit 92.8 0.21 4.6E-06 56.8 6.4 69 427-505 16-86 (663)
348 PLN00020 ribulose bisphosphate 92.7 0.059 1.3E-06 59.3 2.0 26 441-472 148-173 (413)
349 CHL00195 ycf46 Ycf46; Provisio 92.6 0.071 1.5E-06 60.8 2.5 26 441-472 259-284 (489)
350 PRK09354 recA recombinase A; P 92.6 0.23 5.1E-06 54.3 6.4 52 431-489 47-101 (349)
351 CHL00095 clpC Clp protease ATP 92.6 0.13 2.9E-06 62.1 5.0 42 425-472 184-225 (821)
352 TIGR02655 circ_KaiC circadian 92.5 0.19 4.1E-06 57.2 5.8 60 432-498 10-71 (484)
353 COG1444 Predicted P-loop ATPas 92.5 1.3 2.8E-05 52.9 12.6 72 422-498 210-283 (758)
354 TIGR02533 type_II_gspE general 92.5 0.15 3.3E-06 58.1 5.0 43 422-470 224-266 (486)
355 PF14532 Sigma54_activ_2: Sigm 92.4 0.073 1.6E-06 49.8 2.0 25 440-470 20-44 (138)
356 PRK10436 hypothetical protein; 92.4 0.17 3.7E-06 57.3 5.3 43 422-470 200-242 (462)
357 cd01122 GP4d_helicase GP4d_hel 92.4 0.2 4.4E-06 51.8 5.5 51 441-498 30-80 (271)
358 KOG0338 ATP-dependent RNA heli 92.4 0.35 7.6E-06 54.8 7.4 40 542-581 301-342 (691)
359 PRK06964 DNA polymerase III su 92.4 0.26 5.6E-06 53.8 6.4 50 564-613 130-182 (342)
360 KOG0781 Signal recognition par 92.4 0.92 2E-05 51.3 10.6 37 441-484 376-414 (587)
361 PF13238 AAA_18: AAA domain; P 92.4 0.077 1.7E-06 47.6 2.0 22 444-471 1-22 (129)
362 KOG0733 Nuclear AAA ATPase (VC 92.4 0.067 1.5E-06 61.6 1.9 22 441-468 223-244 (802)
363 cd01393 recA_like RecA is a b 92.2 0.29 6.4E-06 49.1 6.2 51 431-486 7-63 (226)
364 TIGR00764 lon_rel lon-related 92.2 0.21 4.6E-06 58.5 5.9 52 441-498 37-88 (608)
365 PRK06090 DNA polymerase III su 92.2 0.25 5.5E-06 53.4 6.0 50 564-613 106-158 (319)
366 PF12775 AAA_7: P-loop contain 92.2 0.16 3.4E-06 53.7 4.3 16 440-455 32-47 (272)
367 TIGR01360 aden_kin_iso1 adenyl 92.2 0.1 2.3E-06 50.5 2.8 24 441-470 3-26 (188)
368 KOG1533 Predicted GTPase [Gene 92.1 0.13 2.8E-06 53.2 3.5 36 444-486 5-42 (290)
369 KOG0925 mRNA splicing factor A 92.1 0.58 1.2E-05 52.9 8.7 145 427-603 50-200 (699)
370 KOG1123 RNA polymerase II tran 92.0 0.21 4.6E-06 56.3 5.2 121 422-576 301-432 (776)
371 PF03029 ATP_bind_1: Conserved 92.0 0.099 2.1E-06 54.1 2.5 29 446-481 1-29 (238)
372 TIGR00064 ftsY signal recognit 92.0 0.15 3.3E-06 53.7 3.9 37 442-485 73-110 (272)
373 PF00910 RNA_helicase: RNA hel 91.8 0.12 2.7E-06 46.4 2.6 12 444-455 1-12 (107)
374 COG2805 PilT Tfp pilus assembl 91.8 0.23 4.9E-06 53.3 4.9 36 440-481 124-159 (353)
375 PRK00131 aroK shikimate kinase 91.8 0.12 2.6E-06 49.2 2.6 25 441-471 4-28 (175)
376 PRK08118 topology modulation p 91.8 0.11 2.4E-06 50.6 2.4 23 444-472 4-26 (167)
377 PRK15483 type III restriction- 91.7 0.31 6.8E-06 59.5 6.6 42 443-489 61-102 (986)
378 PRK09302 circadian clock prote 91.7 0.3 6.4E-06 55.8 6.2 59 432-498 262-322 (509)
379 PRK07993 DNA polymerase III su 91.7 0.57 1.2E-05 50.9 8.1 49 565-613 107-158 (334)
380 KOG4439 RNA polymerase II tran 91.6 0.32 6.9E-06 56.9 6.2 157 423-607 325-505 (901)
381 PRK13765 ATP-dependent proteas 91.6 0.19 4E-06 59.2 4.4 64 428-497 36-100 (637)
382 COG3267 ExeA Type II secretory 91.5 0.55 1.2E-05 49.2 7.3 65 429-500 37-103 (269)
383 TIGR03499 FlhF flagellar biosy 91.5 0.22 4.7E-06 52.7 4.5 37 442-483 195-231 (282)
384 TIGR02903 spore_lon_C ATP-depe 91.4 0.2 4.2E-06 58.8 4.4 27 440-472 174-200 (615)
385 KOG0388 SNF2 family DNA-depend 91.4 0.35 7.6E-06 56.6 6.2 166 422-605 566-735 (1185)
386 KOG0652 26S proteasome regulat 91.4 0.12 2.6E-06 54.3 2.3 15 441-455 205-219 (424)
387 PRK14531 adenylate kinase; Pro 91.4 0.13 2.9E-06 50.5 2.5 23 443-471 4-26 (183)
388 PF05673 DUF815: Protein of un 91.4 0.37 8E-06 50.3 5.9 53 426-485 33-89 (249)
389 TIGR02639 ClpA ATP-dependent C 91.3 0.22 4.7E-06 59.6 4.8 35 431-471 193-227 (731)
390 KOG0387 Transcription-coupled 91.3 1.2 2.7E-05 52.8 10.6 170 422-606 204-378 (923)
391 cd01428 ADK Adenylate kinase ( 91.3 0.12 2.7E-06 50.3 2.3 20 444-469 2-21 (194)
392 PRK15455 PrkA family serine pr 91.3 0.23 5.1E-06 57.5 4.8 29 440-474 102-130 (644)
393 PRK06731 flhF flagellar biosyn 91.3 1.5 3.2E-05 46.4 10.5 35 442-483 76-110 (270)
394 KOG0732 AAA+-type ATPase conta 91.3 0.23 4.9E-06 60.8 4.8 37 567-603 364-413 (1080)
395 CHL00176 ftsH cell division pr 91.3 0.21 4.6E-06 58.8 4.5 41 423-469 186-238 (638)
396 PHA02774 E1; Provisional 91.2 0.46 1E-05 55.1 7.0 38 429-472 421-459 (613)
397 KOG0343 RNA Helicase [RNA proc 91.2 0.32 6.8E-06 55.6 5.5 134 422-581 90-230 (758)
398 TIGR02538 type_IV_pilB type IV 91.2 0.25 5.5E-06 57.3 5.0 43 422-470 298-340 (564)
399 KOG0734 AAA+-type ATPase conta 91.2 0.12 2.5E-06 58.9 2.1 22 441-468 337-358 (752)
400 TIGR01243 CDC48 AAA family ATP 91.1 0.25 5.3E-06 59.1 5.0 23 441-469 212-234 (733)
401 COG0464 SpoVK ATPases of the A 91.1 0.11 2.4E-06 58.9 2.0 21 443-469 278-298 (494)
402 cd02019 NK Nucleoside/nucleoti 91.1 0.26 5.6E-06 40.9 3.7 22 444-471 2-23 (69)
403 PRK14532 adenylate kinase; Pro 91.1 0.13 2.9E-06 50.2 2.3 20 444-469 3-22 (188)
404 PF13476 AAA_23: AAA domain; P 91.1 0.11 2.3E-06 50.3 1.6 27 441-473 19-45 (202)
405 PRK06645 DNA polymerase III su 91.1 0.2 4.2E-06 57.5 3.9 26 441-472 43-68 (507)
406 KOG0729 26S proteasome regulat 91.1 0.14 3E-06 53.9 2.4 15 441-455 211-225 (435)
407 PRK10416 signal recognition pa 91.0 0.22 4.7E-06 53.8 4.0 38 442-486 115-153 (318)
408 PRK03839 putative kinase; Prov 91.0 0.14 3.1E-06 49.8 2.3 22 444-471 3-24 (180)
409 COG0466 Lon ATP-dependent Lon 90.9 0.24 5.2E-06 58.2 4.4 38 429-472 338-375 (782)
410 PRK11823 DNA repair protein Ra 90.9 0.41 8.9E-06 54.0 6.2 57 431-495 68-126 (446)
411 PRK02496 adk adenylate kinase; 90.8 0.16 3.5E-06 49.6 2.5 22 444-471 4-25 (184)
412 COG1223 Predicted ATPase (AAA+ 90.8 0.15 3.2E-06 53.7 2.3 15 441-455 151-165 (368)
413 PRK09302 circadian clock prote 90.7 0.42 9.1E-06 54.6 6.2 61 431-498 19-81 (509)
414 PF00406 ADK: Adenylate kinase 90.7 0.12 2.7E-06 48.8 1.6 20 446-471 1-20 (151)
415 PF13555 AAA_29: P-loop contai 90.7 0.19 4.1E-06 41.6 2.4 25 443-473 25-49 (62)
416 TIGR02030 BchI-ChlI magnesium 90.5 0.26 5.6E-06 53.7 4.0 27 440-472 24-50 (337)
417 TIGR00368 Mg chelatase-related 90.5 0.21 4.5E-06 57.2 3.4 60 425-492 197-256 (499)
418 COG1074 RecB ATP-dependent exo 90.5 0.19 4.1E-06 63.0 3.3 58 565-630 377-438 (1139)
419 TIGR02525 plasmid_TraJ plasmid 90.4 0.3 6.5E-06 53.9 4.5 37 441-482 149-185 (372)
420 cd01672 TMPK Thymidine monopho 90.4 0.48 1E-05 45.9 5.4 33 443-482 2-34 (200)
421 PRK14530 adenylate kinase; Pro 90.4 0.17 3.7E-06 50.9 2.4 24 442-471 4-27 (215)
422 PF12846 AAA_10: AAA-like doma 90.4 0.4 8.7E-06 49.4 5.1 42 442-490 2-43 (304)
423 KOG3928 Mitochondrial ribosome 90.3 0.25 5.4E-06 54.8 3.6 36 441-484 179-214 (461)
424 PRK05917 DNA polymerase III su 90.3 0.81 1.8E-05 48.9 7.4 49 565-613 94-145 (290)
425 PF06068 TIP49: TIP49 C-termin 90.3 0.24 5.2E-06 54.5 3.5 69 567-637 279-351 (398)
426 cd01123 Rad51_DMC1_radA Rad51_ 90.2 0.47 1E-05 47.9 5.4 24 432-455 8-33 (235)
427 PRK14528 adenylate kinase; Pro 90.2 0.19 4.2E-06 49.6 2.5 23 443-471 3-25 (186)
428 COG1202 Superfamily II helicas 90.1 0.9 1.9E-05 52.4 7.9 133 421-580 214-352 (830)
429 cd01121 Sms Sms (bacterial rad 90.1 0.52 1.1E-05 52.1 6.0 58 431-496 70-129 (372)
430 TIGR01243 CDC48 AAA family ATP 90.1 0.32 7E-06 58.1 4.7 48 418-471 451-511 (733)
431 PRK08154 anaerobic benzoate ca 90.1 0.35 7.5E-06 51.9 4.5 44 422-471 106-157 (309)
432 PRK06696 uridine kinase; Valid 90.1 0.51 1.1E-05 47.9 5.5 35 440-481 21-55 (223)
433 COG0593 DnaA ATPase involved i 90.1 0.73 1.6E-05 51.4 7.1 58 425-487 95-154 (408)
434 TIGR00041 DTMP_kinase thymidyl 90.1 0.53 1.2E-05 46.1 5.5 34 442-482 4-37 (195)
435 PRK07261 topology modulation p 90.1 0.19 4.2E-06 49.0 2.4 22 444-471 3-24 (171)
436 COG1703 ArgK Putative periplas 90.1 0.54 1.2E-05 50.4 5.7 48 429-483 38-86 (323)
437 cd02021 GntK Gluconate kinase 90.0 0.18 4E-06 47.3 2.1 21 443-469 1-21 (150)
438 PRK05342 clpX ATP-dependent pr 90.0 0.2 4.3E-06 56.0 2.7 25 442-472 109-133 (412)
439 PRK14527 adenylate kinase; Pro 90.0 0.22 4.7E-06 49.1 2.7 23 441-469 6-28 (191)
440 TIGR00150 HI0065_YjeE ATPase, 90.0 0.39 8.5E-06 45.6 4.3 58 425-492 4-63 (133)
441 KOG0737 AAA+-type ATPase [Post 89.9 0.15 3.2E-06 55.7 1.5 23 441-469 127-149 (386)
442 PRK06762 hypothetical protein; 89.9 0.2 4.3E-06 48.0 2.3 24 442-471 3-26 (166)
443 PF00265 TK: Thymidine kinase; 89.9 1.1 2.3E-05 44.5 7.4 36 443-485 3-38 (176)
444 TIGR00416 sms DNA repair prote 89.9 0.53 1.1E-05 53.3 6.0 59 430-496 81-141 (454)
445 CHL00081 chlI Mg-protoporyphyr 89.9 0.35 7.5E-06 53.0 4.3 41 427-473 24-64 (350)
446 PRK00279 adk adenylate kinase; 89.9 0.21 4.5E-06 50.3 2.5 21 444-470 3-23 (215)
447 PRK06547 hypothetical protein; 89.9 0.28 6.1E-06 48.2 3.4 26 439-470 13-38 (172)
448 PRK06851 hypothetical protein; 89.8 0.31 6.7E-06 53.7 3.9 52 432-491 206-259 (367)
449 PRK12608 transcription termina 89.8 0.52 1.1E-05 52.1 5.7 63 431-498 123-187 (380)
450 KOG0924 mRNA splicing factor A 89.8 1.2 2.7E-05 52.1 8.7 54 440-500 370-424 (1042)
451 PRK05541 adenylylsulfate kinas 89.8 0.37 8E-06 46.7 4.1 27 441-473 7-33 (176)
452 PRK10865 protein disaggregatio 89.8 0.3 6.5E-06 59.5 4.2 48 429-482 187-240 (857)
453 TIGR01351 adk adenylate kinase 89.8 0.2 4.4E-06 50.2 2.3 20 444-469 2-21 (210)
454 TIGR01313 therm_gnt_kin carboh 89.8 0.17 3.8E-06 48.2 1.7 21 444-470 1-21 (163)
455 cd00464 SK Shikimate kinase (S 89.7 0.24 5.1E-06 46.3 2.6 22 444-471 2-23 (154)
456 PRK08233 hypothetical protein; 89.7 0.17 3.7E-06 48.7 1.7 24 442-471 4-27 (182)
457 COG0563 Adk Adenylate kinase a 89.7 0.22 4.8E-06 49.3 2.4 21 444-470 3-23 (178)
458 PLN02200 adenylate kinase fami 89.7 0.21 4.6E-06 51.4 2.4 24 442-471 44-67 (234)
459 TIGR00763 lon ATP-dependent pr 89.6 0.27 5.9E-06 59.2 3.5 26 441-472 347-372 (775)
460 COG0610 Type I site-specific r 89.6 2.4 5.2E-05 52.4 11.7 151 427-605 252-415 (962)
461 PF04665 Pox_A32: Poxvirus A32 89.4 0.33 7.2E-06 50.5 3.6 35 443-484 15-49 (241)
462 PRK11608 pspF phage shock prot 89.4 0.7 1.5E-05 49.9 6.3 42 425-472 12-54 (326)
463 PF03308 ArgK: ArgK protein; 89.4 0.61 1.3E-05 49.1 5.5 52 428-486 15-69 (266)
464 COG1224 TIP49 DNA helicase TIP 89.4 0.24 5.2E-06 54.1 2.6 70 567-637 292-364 (450)
465 KOG0739 AAA+-type ATPase [Post 89.4 0.22 4.7E-06 53.3 2.2 13 443-455 168-180 (439)
466 PRK11034 clpA ATP-dependent Cl 89.3 0.38 8.2E-06 57.8 4.4 35 431-471 197-231 (758)
467 COG0552 FtsY Signal recognitio 89.3 0.4 8.7E-06 51.9 4.1 42 441-489 139-181 (340)
468 TIGR00609 recB exodeoxyribonuc 89.2 0.38 8.3E-06 60.0 4.6 41 565-606 295-337 (1087)
469 PRK05818 DNA polymerase III su 89.2 0.52 1.1E-05 49.6 4.9 48 565-613 87-138 (261)
470 TIGR03574 selen_PSTK L-seryl-t 89.2 0.38 8.2E-06 49.6 3.8 33 443-482 1-33 (249)
471 COG1936 Predicted nucleotide k 89.2 0.26 5.7E-06 48.8 2.5 20 443-468 2-21 (180)
472 PRK10865 protein disaggregatio 89.1 0.42 9E-06 58.3 4.7 26 442-473 599-624 (857)
473 PF13521 AAA_28: AAA domain; P 89.0 0.18 3.9E-06 48.3 1.2 21 444-470 2-22 (163)
474 PTZ00088 adenylate kinase 1; P 89.0 0.26 5.7E-06 50.7 2.5 22 444-471 9-30 (229)
475 PF07726 AAA_3: ATPase family 89.0 0.22 4.7E-06 47.2 1.7 60 568-629 64-130 (131)
476 PRK10463 hydrogenase nickel in 88.9 0.63 1.4E-05 49.7 5.3 50 425-482 88-137 (290)
477 cd01125 repA Hexameric Replica 88.9 0.62 1.3E-05 47.7 5.1 50 443-498 3-62 (239)
478 TIGR02784 addA_alphas double-s 88.8 0.38 8.3E-06 60.3 4.2 42 565-606 390-441 (1141)
479 PRK09087 hypothetical protein; 88.8 0.26 5.6E-06 50.5 2.3 22 441-468 44-65 (226)
480 TIGR02974 phageshock_pspF psp 88.8 0.87 1.9E-05 49.3 6.4 27 440-472 21-47 (329)
481 KOG0730 AAA+-type ATPase [Post 88.8 0.51 1.1E-05 55.0 4.8 47 416-468 430-489 (693)
482 PRK12904 preprotein translocas 88.8 0.7 1.5E-05 55.8 6.1 123 445-604 98-229 (830)
483 PRK12724 flagellar biosynthesi 88.8 0.46 1E-05 53.3 4.3 51 442-498 224-276 (432)
484 PRK13947 shikimate kinase; Pro 88.8 0.29 6.2E-06 46.9 2.4 23 443-471 3-25 (171)
485 cd00544 CobU Adenosylcobinamid 88.7 0.57 1.2E-05 46.0 4.5 46 443-498 1-46 (169)
486 TIGR00390 hslU ATP-dependent p 88.7 0.51 1.1E-05 52.9 4.7 51 441-498 47-102 (441)
487 PRK15429 formate hydrogenlyase 88.7 0.68 1.5E-05 54.9 6.0 35 440-481 398-432 (686)
488 KOG1132 Helicase of the DEAD s 88.7 2.4 5.2E-05 51.0 10.2 75 424-498 22-132 (945)
489 COG0606 Predicted ATPase with 88.7 0.35 7.6E-06 54.6 3.3 31 423-455 182-212 (490)
490 KOG0742 AAA+-type ATPase [Post 88.6 0.28 6.1E-06 54.4 2.5 38 419-456 354-399 (630)
491 PRK06305 DNA polymerase III su 88.6 0.58 1.3E-05 52.9 5.1 48 565-612 120-170 (451)
492 KOG0726 26S proteasome regulat 88.6 0.52 1.1E-05 50.4 4.3 38 418-455 183-233 (440)
493 PRK13107 preprotein translocas 88.6 0.91 2E-05 55.1 6.9 115 445-587 99-223 (908)
494 PRK00889 adenylylsulfate kinas 88.5 0.5 1.1E-05 45.7 4.0 34 442-482 5-38 (175)
495 PRK05201 hslU ATP-dependent pr 88.5 0.36 7.8E-06 54.1 3.3 51 441-498 50-105 (443)
496 PRK13909 putative recombinatio 88.3 0.4 8.7E-06 58.8 3.9 42 565-606 327-376 (910)
497 PRK13900 type IV secretion sys 88.3 0.66 1.4E-05 50.4 5.1 44 428-481 149-192 (332)
498 KOG0346 RNA helicase [RNA proc 88.3 1.9 4.1E-05 48.4 8.5 126 425-576 43-180 (569)
499 TIGR00959 ffh signal recogniti 88.2 0.52 1.1E-05 53.0 4.3 41 442-488 100-141 (428)
500 PRK12726 flagellar biosynthesi 88.2 0.52 1.1E-05 52.3 4.3 46 441-493 206-254 (407)
No 1
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=100.00 E-value=3.1e-47 Score=417.30 Aligned_cols=371 Identities=22% Similarity=0.268 Sum_probs=283.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhc-ccccceeEeechhhhhhhccccccccCCcCCCCcEEEEEEeCCCCCCCCCC
Q 006311 244 KPLLPSTYKDYFAALLYAEDFYEEKWSG-FQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKLFVAFEIDSVPERRPFL 322 (651)
Q Consensus 244 ~~Lt~~nY~~~f~~LL~lEE~~~~~i~~-y~~~~v~l~~~~~~~~~~~l~~~~~g~~~~~~g~~~~~L~vpglaE~rPsl 322 (651)
..-....|...|..|+.+|..+...+++ -..++++++|.. ..+.+.++.|..|.+ ++.-.+
T Consensus 235 ry~da~~y~~vf~pliklea~ydk~~Kes~~q~~~tvRW~~-----------------gLnkk~~a~f~~~k~-~~e~kl 296 (935)
T KOG1802|consen 235 RYEDAYEYQNVFSPLIKLEADYDKRLKESQTQENGTVRWDI-----------------GLNKKRLAYFTLPKL-DSELKL 296 (935)
T ss_pred cccchHHHhhhcchhhhhhhhhhhhhhhhcccccceEEeee-----------------ccccceEEEEecCCC-cchhcc
Confidence 3345789999999999999877665544 456788899842 224567888888887 666789
Q ss_pred CCCCEEEEEECCCCceeEE--EEEEEEecc--cEEEEEEcCCccCCCCCCccEEEEEEeCcchHHHHHHHHHHhhh--hc
Q 006311 323 LSRDFVYAQRSGGKSKKFQ--GFLYRVVKW--TTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASD--SL 396 (651)
Q Consensus 323 ~~GD~V~v~~~~~~~~~y~--G~V~~v~~~--~~V~L~~~~~~~~~~~~~~~~~V~F~~nr~~~rr~h~Al~~~~~--~~ 396 (651)
..||.+.++..++....|+ |+|.++... +++.|++...-...-+....|.|+|.++-++|.||..|+..+.. ..
T Consensus 297 ~~GdE~~L~y~~~~~~~w~~~g~v~~~pd~~~dE~~lEl~~~~~~p~e~~~~Ftvd~vwk~ts~drm~~alk~la~D~~~ 376 (935)
T KOG1802|consen 297 AIGDEIRLTYSGGLVLPWNGIGSVLKIPDNNGDEVKLELEFSQDPPIEVTHGFTVDFVWKSTSFDRMQLALKLLAVDEKK 376 (935)
T ss_pred ccCCeeEEEecCCcCCcccccceEEecCCCCcceeEEEeecCCCCCcccccceEEEEEEcCccHHHHHHHHHHhhhcccc
Confidence 9999999999876543355 777777663 57766654321122235668999999999999999999987642 11
Q ss_pred c-----ccccCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 397 F-----RNYLFPDCA---SRKSIPYPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 397 ~-----~~~LfP~~~---~~~~~~~~~~~~~~~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
+ ..+|+-... .+...|. .+..+..++||.+|..||+++|+ .+..||||||||||| .|.+++|.
T Consensus 377 vs~y~y~klLgh~~~~~~~k~~LP~-~~s~~~lpkLN~SQ~~AV~~VL~---rplsLIQGPPGTGKT-----vtsa~IVy 447 (935)
T KOG1802|consen 377 VSGYLYHKLLGHPVEDSSLKKLLPR-RFSVPNLPKLNASQSNAVKHVLQ---RPLSLIQGPPGTGKT-----VTSATIVY 447 (935)
T ss_pred chhhhhhHHhcCcchhhhhcccCch-hhcCCCchhhchHHHHHHHHHHc---CCceeeecCCCCCce-----ehhHHHHH
Confidence 1 222222111 1122222 22233457999999999999999 789999999999999 99999999
Q ss_pred HHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcH---------------HHHHhhhcc---c
Q 006311 469 QIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSD---------------EIFQVSLVE---R 530 (651)
Q Consensus 469 qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~---------------~l~~y~~~~---~ 530 (651)
++.+. ...+||||||||.|+|+|++++++ .+.+++|+.+.+|+...-+. ++....... +
T Consensus 448 hl~~~-~~~~VLvcApSNiAVDqLaeKIh~--tgLKVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~g 524 (935)
T KOG1802|consen 448 HLARQ-HAGPVLVCAPSNIAVDQLAEKIHK--TGLKVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGG 524 (935)
T ss_pred HHHHh-cCCceEEEcccchhHHHHHHHHHh--cCceEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcc
Confidence 99997 678999999999999999999987 66899999999987422111 111111110 0
Q ss_pred -------ccc----CCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhccccCCCeEEE
Q 006311 531 -------ECF----SCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIV 599 (651)
Q Consensus 531 -------~~f----~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVL 599 (651)
..| +...++.+.++.||+|||.+||... +....|..|+||||.|++|||+||||...++ ++||
T Consensus 525 elS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~Agd~r---l~~~kfr~VLiDEaTQatEpe~LiPlvlG~k---q~Vl 598 (935)
T KOG1802|consen 525 ELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGAGDRR---LSKFKFRTVLIDEATQATEPECLIPLVLGAK---QLVL 598 (935)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhcCEEEEecccccchh---hccccccEEEEecccccCCcchhhhhhhcce---eEEE
Confidence 011 1234678899999999999998755 4445799999999999999999999997666 9999
Q ss_pred EeCCCCCCccccChHHHhCCCCccHHHHHHcC--------Cccccc-------CccchhhhhhcCC
Q 006311 600 TGAPHNSPSRVRSDIARKNGLKMSYFERLCLT--------EAYRSC-------NSMFFSQLFTEEV 650 (651)
Q Consensus 600 aGD~~QL~PvV~S~~a~~~GL~~SLfERL~~~--------~~Y~~~-------~~~fvtkL~~N~v 650 (651)
||||+||||++..+.|...||.+||||||+.. -+|++| +..|+..-++|||
T Consensus 599 VGDh~QLgpvi~~kK~a~Agl~qsLferli~lg~~P~~L~vQYRmhP~lSefpsn~fY~G~LqnGV 664 (935)
T KOG1802|consen 599 VGDHKQLGPVIMCKKAATAGLSQSLFERLISLGIKPIRLQVQYRMHPALSEFPSNMFYEGELQNGV 664 (935)
T ss_pred eccccccCceeeeHHHHHhHHHHHHHHHHHhccCCceEEEEeeeeChhhhhcchhhhccchhhcCc
Confidence 99999999999999999999999999999873 689999 7899999999998
No 2
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=8.7e-43 Score=382.58 Aligned_cols=314 Identities=23% Similarity=0.320 Sum_probs=226.4
Q ss_pred CCCcEEEEEEeCCCCCCCC--CCCCCCEEEEEEC--C-CCceeEEEEEEEEecccEEEEEEcCCccCCCCCCccEEEEEE
Q 006311 302 TDDKLFVAFEIDSVPERRP--FLLSRDFVYAQRS--G-GKSKKFQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFS 376 (651)
Q Consensus 302 ~~g~~~~~L~vpglaE~rP--sl~~GD~V~v~~~--~-~~~~~y~G~V~~v~~~~~V~L~~~~~~~~~~~~~~~~~V~F~ 376 (651)
..|+.+..|+..+ +.-| ++.+||.|.++.. + +.....+|.|+++.. +.|.+.|.+...... ....+.+.-.
T Consensus 55 l~g~~li~f~~~~--~~lp~~~~~~gd~v~lr~~~~~~~~~~~~~GvV~~~~~-~~i~~a~ee~~d~~~-~~~~l~l~kl 130 (649)
T KOG1803|consen 55 LGGKSLIVFSKNR--EVLPSNSFGPGDVVWLRTDKLNNKSKPCTEGVVYRVAE-DSIDVAFEEEVDKPL-TLSSLRLLKL 130 (649)
T ss_pred ccceEEEEeccCc--cccCcCCCCCCcEEEEEcccccccCcccccceeEeecc-chhhHhHHhhhcccc-hhhHHHHHHh
Confidence 3577788887654 4444 7889999999843 1 223468999999999 777777765322211 1113344445
Q ss_pred eCcchHHHHHHHHHHhhhhc-------cccccCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHhccCCCceEEeC
Q 006311 377 FNRVCLKRAHEAVADASDSL-------FRNYLFPDCASRKSIP-YPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEG 448 (651)
Q Consensus 377 ~nr~~~rr~h~Al~~~~~~~-------~~~~LfP~~~~~~~~~-~~~~~~~~~~~LN~~Q~~AV~~iL~~~~~~p~LI~G 448 (651)
.|..+++|+..++-.+.... +-..+|-+........ ......+.+..||.+|++||..+++. ..+++|+|
T Consensus 131 ~n~vty~R~~~~~i~l~~~~~~~~~~~vv~~l~~~~~~~~~~~~~~~~~~~~~~~ln~SQk~Av~~~~~~--k~l~~I~G 208 (649)
T KOG1803|consen 131 ENKVTYRRMKDTMICLSKFSNPGPSSDVVETLFGDRKPIPSPNIEIKKITFFNKNLNSSQKAAVSFAINN--KDLLIIHG 208 (649)
T ss_pred hhhhhheecHHHHhhHhhhcCccchhhhHHHHhccccCCCCchhhhcccccCCccccHHHHHHHHHHhcc--CCceEeeC
Confidence 67888999888887665311 1112222221111110 11224456789999999999998873 48999999
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHHHH----
Q 006311 449 PLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQ---- 524 (651)
Q Consensus 449 PPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~---- 524 (651)
||||||| +|++|+|.|+++. ++|||||||||.|+|++.+||.. .+..++|++...|..+.+.+.-..
T Consensus 209 PPGTGKT-----~TlvEiI~qlvk~--~k~VLVcaPSn~AVdNiverl~~--~~~~l~R~g~paRl~~~~~~~sld~~~~ 279 (649)
T KOG1803|consen 209 PPGTGKT-----RTLVEIISQLVKQ--KKRVLVCAPSNVAVDNIVERLTH--LKLNLVRVGHPARLLESVADHSLDLLSN 279 (649)
T ss_pred CCCCCce-----eeHHHHHHHHHHc--CCeEEEEcCchHHHHHHHHHhcc--cccchhhcCchhhhhhhhhhhHHHHHHh
Confidence 9999999 9999999999997 89999999999999999999974 678899999887764433221100
Q ss_pred ----------------hhhcc-----c---------------cccC----CChhhhhcccceEeeehhcchhhhhcCCCC
Q 006311 525 ----------------VSLVE-----R---------------ECFS----CPPLEELRQYKVISSTFVSSFRLHNQGITA 564 (651)
Q Consensus 525 ----------------y~~~~-----~---------------~~f~----~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~ 564 (651)
.+... . ..++ ..-++.+.+++||++|..+|.... +..
T Consensus 280 t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~n~~VVfaTl~ga~~~~---~~~ 356 (649)
T KOG1803|consen 280 TKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIISNSRVVFATLGGALDRL---LRK 356 (649)
T ss_pred cCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceEEEeccchhhhh---hcc
Confidence 00000 0 0000 112467789999999999887632 233
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHc----------CCcc
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL----------TEAY 634 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~----------~~~Y 634 (651)
..||+||||||+||+||+|+||+. ++.++||||||+||+|.|.|..|...||+.||||||.+ +.+|
T Consensus 357 ~~fD~vIIDEaaQamE~~cWipvl----k~kk~ILaGDp~QLpP~v~S~~a~~~gl~~Sl~erlae~~~~~~~~~Ln~QY 432 (649)
T KOG1803|consen 357 RTFDLVIIDEAAQAMEPQCWIPVL----KGKKFILAGDPKQLPPTVLSDKAKRGGLQVSLLERLAEKFGNLSKILLNEQY 432 (649)
T ss_pred cCCCEEEEehhhhhccchhhhHHh----cCCceEEeCCcccCCcccccchhhhccchhhHHHHHHHHcccchhhhhhhhh
Confidence 579999999999999999999998 33489999999999999999999999999999999976 4889
Q ss_pred ccc
Q 006311 635 RSC 637 (651)
Q Consensus 635 ~~~ 637 (651)
|++
T Consensus 433 RMn 435 (649)
T KOG1803|consen 433 RMN 435 (649)
T ss_pred cch
Confidence 998
No 3
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=100.00 E-value=2.6e-40 Score=379.11 Aligned_cols=306 Identities=24% Similarity=0.269 Sum_probs=224.9
Q ss_pred CCcEEEEEEeCCCCCCCCCCCCCCEEEEEECCCCceeEEEEEEEEecccEEEEEEcCCccCCCCCCccEEEEEEeCcchH
Q 006311 303 DDKLFVAFEIDSVPERRPFLLSRDFVYAQRSGGKSKKFQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCL 382 (651)
Q Consensus 303 ~g~~~~~L~vpglaE~rPsl~~GD~V~v~~~~~~~~~y~G~V~~v~~~~~V~L~~~~~~~~~~~~~~~~~V~F~~nr~~~ 382 (651)
.|+.++.|.-.. +. ...+.+||.|.++..++....++|+|+++.. +.|.+.|+..... + ....|.|++.+|.++|
T Consensus 41 ~g~~~~~f~~~~-~~-~~~~~~GD~v~i~~~~~~~~~~~g~V~~v~~-~~i~v~~~~~~~~-~-~~~~~~i~~~~~~~t~ 115 (637)
T TIGR00376 41 LGFLLVRFGRRK-AI-ATEISVGDIVLVSRGNPLQSDLTGVVTRVGK-RFITVALEESVPQ-W-SLKRVRIDLYANDVTF 115 (637)
T ss_pred CCeEEEEEecCC-CC-CCcCCCCCEEEEecCCCCCCCcEEEEEEEcC-cEEEEEECCCCCc-c-cCceEEEEEecCccHH
Confidence 467788887432 11 2378899999999766656678999999999 9999999886432 2 2345999999999999
Q ss_pred HHHHHHHHHhhh--hccccccCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchh
Q 006311 383 KRAHEAVADASD--SLFRNYLFPDCASRKSIPYPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTG 460 (651)
Q Consensus 383 rr~h~Al~~~~~--~~~~~~LfP~~~~~~~~~~~~~~~~~~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~ 460 (651)
+||+.|++.+.. ..+.++||........ .......+.++.||++|+.||..++.. .+.++|+||||||||
T Consensus 116 ~rm~~aL~~l~~~~~~l~~~llg~~~p~~~-~~~~~~~~~~~~ln~~Q~~Av~~~l~~--~~~~lI~GpPGTGKT----- 187 (637)
T TIGR00376 116 KRMKEALRALTENHSRLLEFILGREAPSKA-SEIHDFQFFDPNLNESQKEAVSFALSS--KDLFLIHGPPGTGKT----- 187 (637)
T ss_pred HHHHHHHHHHHhchhhHHHHHhCCCCCCcc-cccccccccCCCCCHHHHHHHHHHhcC--CCeEEEEcCCCCCHH-----
Confidence 999999998864 2345667755432211 111123345689999999999999872 478999999999999
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcH--------------------
Q 006311 461 NVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSD-------------------- 520 (651)
Q Consensus 461 ~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~-------------------- 520 (651)
+|+++++.++++. +.+||+|||||.|||+++++|.+. +.+++|++...|....+..
T Consensus 188 ~t~~~ii~~~~~~--g~~VLv~a~sn~Avd~l~e~l~~~--~~~vvRlg~~~r~~~~~~~~sl~~~~~~~~~~~~~~~~~ 263 (637)
T TIGR00376 188 RTLVELIRQLVKR--GLRVLVTAPSNIAVDNLLERLALC--DQKIVRLGHPARLLKSNKQHSLDYLIENHPKYQIVADIR 263 (637)
T ss_pred HHHHHHHHHHHHc--CCCEEEEcCcHHHHHHHHHHHHhC--CCcEEEeCCchhcchhHHhccHHHHHhcChhHHHHHHHH
Confidence 9999999998886 669999999999999999999863 6789999987763221100
Q ss_pred -HHHHhhh---------------ccc----------cccC--------------------------------CChhhhhc
Q 006311 521 -EIFQVSL---------------VER----------ECFS--------------------------------CPPLEELR 542 (651)
Q Consensus 521 -~l~~y~~---------------~~~----------~~f~--------------------------------~p~~~~L~ 542 (651)
++..... +.+ ..++ ....+.|.
T Consensus 264 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 343 (637)
T TIGR00376 264 EKIDELIEERNKKLKPSPQKRRGLSDIKILRKALKKREARGIESLKIASMAEWIETNKSIDRLLKLLPEIEERIENEILA 343 (637)
T ss_pred HHHHHHHHHHHhhccchHhHhhccchHHHHHHHHhhhhhcccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 0000000 000 0000 00123467
Q ss_pred ccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCc
Q 006311 543 QYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKM 622 (651)
Q Consensus 543 ~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~ 622 (651)
+++|+++|+.+. .+....||+||||||+|++||++|+||. .+ .++||||||+||||+|.|.. ..||+.
T Consensus 344 ~a~v~~st~~~~------~l~~~~Fd~vIIDEAsQ~~ep~~lipl~-~~---~~~vLvGD~~QLpP~v~s~~--~~~l~~ 411 (637)
T TIGR00376 344 ESDVVQSTNSSA------GLKGWEFDVAVIDEASQAMEPSCLIPLL-KA---RKLILAGDHKQLPPTILSHD--AEELEL 411 (637)
T ss_pred hCCEEEeccCcH------hhccCCCCEEEEECccccchHHHHHHHh-hC---CeEEEecChhhcCCcccccc--ccccch
Confidence 788776664422 1345689999999999999999999998 33 39999999999999999876 358999
Q ss_pred cHHHHHHcC---------Cccccc
Q 006311 623 SYFERLCLT---------EAYRSC 637 (651)
Q Consensus 623 SLfERL~~~---------~~Y~~~ 637 (651)
||||||++. .+||+|
T Consensus 412 SlferL~~~~~~~~~~L~~QYRMh 435 (637)
T TIGR00376 412 TLFERLIKEYPERSRTLNVQYRMN 435 (637)
T ss_pred hHHHHHHHhCCCceeecchhcCCC
Confidence 999999863 479988
No 4
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-36 Score=340.52 Aligned_cols=360 Identities=19% Similarity=0.164 Sum_probs=262.7
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH-HHhcccccceeEeechhhhhhhccccccccCCcCCCCcEEEEEEeCCCCCC
Q 006311 240 KVLKKPLLPSTYKDYFAALLYAEDFYEE-KWSGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKLFVAFEIDSVPER 318 (651)
Q Consensus 240 ~~l~~~Lt~~nY~~~f~~LL~lEE~~~~-~i~~y~~~~v~l~~~~~~~~~~~l~~~~~g~~~~~~g~~~~~L~vpglaE~ 318 (651)
+.....++.. ..+++.+++.|+. +. .+++|++..+...+.. +..- .++..++| +++.
T Consensus 158 ~~~~~~~~~~--~~k~~~~l~~~~~-~~~~ir~y~~~~v~~~~~~-----------------~~~~-r~~~~~r~-l~~~ 215 (775)
T KOG1804|consen 158 QAVKSLLQQE--EAKILILLHSESA-ADIYIREYLHPYVEEGLPE-----------------ATPL-RVYSRKRP-LAQV 215 (775)
T ss_pred chhhcccccc--cccceEeechhHH-HHHHHHHhhcccccccccc-----------------cccc-cceeeccc-cccc
Confidence 3344555555 6788999999998 66 9999987766444411 1122 56678888 9999
Q ss_pred CCCCCCCCEEEEEECC-CCceeEEEEEEEEecccEEEEEEcCCccCCCCCCccEEEEEEeCcchHHHHHHHHHHhhhhcc
Q 006311 319 RPFLLSRDFVYAQRSG-GKSKKFQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLF 397 (651)
Q Consensus 319 rPsl~~GD~V~v~~~~-~~~~~y~G~V~~v~~~~~V~L~~~~~~~~~~~~~~~~~V~F~~nr~~~rr~h~Al~~~~~~~~ 397 (651)
+|.+..+|+++-.... ....++.+.+|+|.- .++...+.............+. ..++|++.+....+
T Consensus 216 ~pvv~~~~~if~~~~~~~~pq~~~~~~Hrv~~-~~~~~s~~~~~l~~~~~~~t~~-----------~~~eaae~~~~~~l 283 (775)
T KOG1804|consen 216 NPVVLQYCFIFDSHITFRRPQVEDLFKHRVVV-VTLSQSQYLTPLGLPVGFFTHI-----------LLDEAAQAMECELL 283 (775)
T ss_pred CCceeeeeeeccchhhhccchhhhhcccceeE-eecceeecccccCCCCCceeee-----------eHHHHHhcCCceee
Confidence 9999999988766431 125677888898888 7777777554433322221122 16777777765555
Q ss_pred ccccCCCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC
Q 006311 398 RNYLFPDCASRKSIPY---PSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS 474 (651)
Q Consensus 398 ~~~LfP~~~~~~~~~~---~~~~~~~~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~ 474 (651)
..++||.... +.+-. -.+.++.+...+.+|+.+ .+.+.+..||+++|||||||| .|+++++.++....
T Consensus 284 ~P~~~~~~~~-~~~L~~~~~ql~~~l~s~~~~~~~~~---~~~~~~~~~y~~~~p~~~g~~-----~n~~~a~~~v~~~~ 354 (775)
T KOG1804|consen 284 MPLALPSSGT-RIVLAGPHLQLTPFLNSVAREEQALH---LLLCRLPEPYIVFGPPGTGKT-----ENYREAIAIVSFTS 354 (775)
T ss_pred cccccCCCCc-eeeecccccccccchhhhhhhhhhhh---hcccccccccccccCCCcCCc-----cchHHHHHHHHhcc
Confidence 5566666542 21111 122333334445555555 566667899999999999999 99999999999888
Q ss_pred CCCeEEEEccChhhHHHHHHHHHh--hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehh
Q 006311 475 PKSRILICAPWNRTCDKLMECLMK--DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFV 552 (651)
Q Consensus 475 ~~~rILVcApSNsAaD~l~~rL~~--~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~s 552 (651)
+..+|++|+++|+|+|+.+.|++- .+......++++..+...-+.+++..++......| .+..++|+++||+
T Consensus 355 ~~~~il~~~p~~a~~k~~~~rl~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~e~~~------~~~~~~i~i~t~~ 428 (775)
T KOG1804|consen 355 PHFYILVCAPSNASGKQPAHRLHYPLTFSTARGEDVRAKSSTAWYNNAEVSEVVEKVEELR------KVWPYRWGITTCT 428 (775)
T ss_pred hHHHhhcccccccccccccccccccccccccccccccccchhHHhhhHHHHHHHHHHHHHh------hccceEEEEeecc
Confidence 999999999999999999999953 11222233344433333333344444443333333 3467899999999
Q ss_pred cchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHcCC
Q 006311 553 SSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLTE 632 (651)
Q Consensus 553 sa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~~~ 632 (651)
++|.+...+++.+||+||++|||||++|||+|||+..+.... ++||+|||+||+|++.|..|.++||+.|||||++++.
T Consensus 429 sag~~~~~g~~v~~f~hil~DeAg~stEpe~lv~i~~~~~~~-~vvLsgdh~Qlgpv~~s~~A~~~gl~rsLler~l~r~ 507 (775)
T KOG1804|consen 429 SAGCVTSYGFQVGHFRHILVDEAGVSTEPELLVPGKQFRQPF-QVVLSGDHTQLGPVSKSARAEELGLDRSLLERALTRA 507 (775)
T ss_pred ceeeeecccccccceeeeeecccccccCccccccccccccee-EEEEccCcccccccccchhhhhhcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999776544 9999999999999999999999999999999999998
Q ss_pred ccccc-----CccchhhhhhcC
Q 006311 633 AYRSC-----NSMFFSQLFTEE 649 (651)
Q Consensus 633 ~Y~~~-----~~~fvtkL~~N~ 649 (651)
.|+.. |+.+.|||++|.
T Consensus 508 ~~~~~~~g~~~~l~~t~l~rny 529 (775)
T KOG1804|consen 508 QSLVAVVGDYNALCSTGLCRNY 529 (775)
T ss_pred hhccccCCCcccccchhhHHHH
Confidence 88776 999999999984
No 5
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-34 Score=325.92 Aligned_cols=194 Identities=19% Similarity=0.211 Sum_probs=167.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..||..|++|+..+|.+ ....+|.|.|||||| +||+.+|..++.. +++||++++||+|+|+|+.+|.. -
T Consensus 668 ~~LN~dQr~A~~k~L~a--edy~LI~GMPGTGKT-----TtI~~LIkiL~~~--gkkVLLtsyThsAVDNILiKL~~--~ 736 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA--EDYALILGMPGTGKT-----TTISLLIKILVAL--GKKVLLTSYTHSAVDNILIKLKG--F 736 (1100)
T ss_pred hhcCHHHHHHHHHHHhc--cchheeecCCCCCch-----hhHHHHHHHHHHc--CCeEEEEehhhHHHHHHHHHHhc--c
Confidence 48999999999999985 567899999999999 9999999988886 99999999999999999999986 3
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCC--ChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSC--PPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~--p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
+..++|+|..+ .++++++++|......+.. .-+..+.+..||+|||-+.+... |...+||++|||||+|+.
T Consensus 737 ~i~~lRLG~~~----kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl---f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 737 GIYILRLGSEE----KIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL---FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CcceeecCCcc----ccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh---hhccccCEEEEccccccc
Confidence 45699999864 4789999998644332221 12456688899999999988654 445579999999999999
Q ss_pred hHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHc---------CCccccc
Q 006311 580 EPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL---------TEAYRSC 637 (651)
Q Consensus 580 EpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~---------~~~Y~~~ 637 (651)
.|-+|.||. +++ ++||||||.||||.|+|..|++.|++.|||+||.+ +-+||+.
T Consensus 810 lP~~LgPL~-~s~---kFVLVGDh~QLpPLV~s~ear~~Gl~~SLFkrL~e~hpeaV~~Lt~QYRMn 872 (1100)
T KOG1805|consen 810 LPLCLGPLS-FSN---KFVLVGDHYQLPPLVRSSEARQEGLSESLFKRLSEKHPEAVSSLTLQYRMN 872 (1100)
T ss_pred cchhhhhhh-hcc---eEEEecccccCCccccchhhhhcCcchHHHHHHhhhCchHHHhHHHHHhhc
Confidence 999999999 777 89999999999999999999999999999999988 2579987
No 6
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=99.98 E-value=1.2e-32 Score=272.45 Aligned_cols=177 Identities=23% Similarity=0.353 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH------HhCCCCeEEEEccChhhHHHHHHHH
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR------RRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll------~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
+||++|++||..+++. ...++|+|||||||| +|++.++..++ ....+.+||+||+||.|+|++++++
T Consensus 1 ~ln~~Q~~Ai~~~~~~--~~~~~i~GpPGTGKT-----~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 1 KLNESQREAIQSALSS--NGITLIQGPPGTGKT-----TTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp ---HHHHHHHHHHCTS--SE-EEEE-STTSSHH-----HHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC--CCCEEEECCCCCChH-----HHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHH
Confidence 5899999999999982 225999999999999 99999998883 2467899999999999999999999
Q ss_pred Hh------hCCCcchhhhccccccccCCcHHHHHhhhc--------------------------------cccccC----
Q 006311 497 MK------DIPASEMFRANAAFREADGVSDEIFQVSLV--------------------------------ERECFS---- 534 (651)
Q Consensus 497 ~~------~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~--------------------------------~~~~f~---- 534 (651)
.+ ......++|++.... ..++++..++.. ....+.
T Consensus 74 ~~~~~~~~~~~~~~~ir~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (236)
T PF13086_consen 74 KKLLDEDGKVYKPKIIRLGSEEE---KIHEDLQKFSLESKLEQRFESKLKRLREQLEELQQKIRLSELKEEKKKLKKSIK 150 (236)
T ss_dssp HC--------TT--EEE---GGT---TS--TTGGGBHHHHHHTTT-----------THHHCHHHHHHHHHHHCCSSCHHH
T ss_pred Hhhccccccccccchhhhccccc---ccccccccccccccccccccccchhhhHHHHHHHHhhhhhhhhhhhhhcchhcc
Confidence 87 344567889887751 111111111100 000000
Q ss_pred -----------CChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCC
Q 006311 535 -----------CPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 535 -----------~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~ 603 (651)
.-....+..++||+||++++.......+ ...||+||||||||++|+++++||...+ .++||+|||
T Consensus 151 ~~~~~~~~~~~~~~~~~l~~~~vi~~T~~~~~~~~~~~~-~~~~d~vIvDEAsq~~e~~~l~~l~~~~---~~~vlvGD~ 226 (236)
T PF13086_consen 151 RLRKELEKIREELRRFILKEADVIFTTLSSAASPFLSNF-KEKFDVVIVDEASQITEPEALIPLSRAP---KRIVLVGDP 226 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SEEEEETCGGG-CCGTT------SEEEETTGGGS-HHHHHHHHTTTB---SEEEEEE-T
T ss_pred cccccccccccchhhhhcccccccccccccchhhHhhhh-cccCCEEEEeCCCCcchHHHHHHHHHhC---CEEEEECCh
Confidence 0113567889999999998854332211 1279999999999999999999997433 499999999
Q ss_pred CCCCccccCh
Q 006311 604 HNSPSRVRSD 613 (651)
Q Consensus 604 ~QL~PvV~S~ 613 (651)
+||||++.|+
T Consensus 227 ~QLpP~v~s~ 236 (236)
T PF13086_consen 227 KQLPPVVKSE 236 (236)
T ss_dssp TS-----S--
T ss_pred hhcCCeeCCC
Confidence 9999999874
No 7
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=99.77 E-value=7.2e-19 Score=174.84 Aligned_cols=140 Identities=17% Similarity=0.190 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 502 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~ 502 (651)
.||++|++|+..++.. +....+|+|||||||| +++..++ ..+.. .+.+|++|||||.|++.|.+++. +..
T Consensus 1 ~L~~~Q~~a~~~~l~~-~~~~~~l~G~aGtGKT-----~~l~~~~-~~~~~-~g~~v~~~apT~~Aa~~L~~~~~--~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS-GDRVSVLQGPAGTGKT-----TLLKALA-EALEA-AGKRVIGLAPTNKAAKELREKTG--IEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHC-TCSEEEEEESTTSTHH-----HHHHHHH-HHHHH-TT--EEEEESSHHHHHHHHHHHT--S-E
T ss_pred CCCHHHHHHHHHHHhc-CCeEEEEEECCCCCHH-----HHHHHHH-HHHHh-CCCeEEEECCcHHHHHHHHHhhC--cch
Confidence 4899999999999873 3468899999999999 7776654 45554 37999999999999999988853 122
Q ss_pred cchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHh
Q 006311 503 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPE 582 (651)
Q Consensus 503 ~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE 582 (651)
..+-++..... ..... .......+++|||||||++....
T Consensus 71 ~Ti~~~l~~~~----------------~~~~~-------------------------~~~~~~~~~vliVDEasmv~~~~ 109 (196)
T PF13604_consen 71 QTIHSFLYRIP----------------NGDDE-------------------------GRPELPKKDVLIVDEASMVDSRQ 109 (196)
T ss_dssp EEHHHHTTEEC----------------CEECC-------------------------SSCC-TSTSEEEESSGGG-BHHH
T ss_pred hhHHHHHhcCC----------------ccccc-------------------------ccccCCcccEEEEecccccCHHH
Confidence 22222111000 00000 00002247899999999998877
Q ss_pred HHHHHhccccCCCeEEEEeCCCCCCccccCh
Q 006311 583 TMIVLGNLANENTRVIVTGAPHNSPSRVRSD 613 (651)
Q Consensus 583 ~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~ 613 (651)
...-+......+.++||+||++||+||-.+.
T Consensus 110 ~~~ll~~~~~~~~klilvGD~~QL~pV~~g~ 140 (196)
T PF13604_consen 110 LARLLRLAKKSGAKLILVGDPNQLPPVGAGS 140 (196)
T ss_dssp HHHHHHHS-T-T-EEEEEE-TTSHHHCSTTC
T ss_pred HHHHHHHHHhcCCEEEEECCcchhcCCcCCc
Confidence 6655553333478999999999999997654
No 8
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=99.72 E-value=1.3e-17 Score=187.16 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=71.6
Q ss_pred hhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCCCccccC-hHHHh
Q 006311 539 EELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRS-DIARK 617 (651)
Q Consensus 539 ~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S-~~a~~ 617 (651)
..++.+.||..|++++++.... +..-....|||.||+...|+.++-++...+. +|||+|||+||.|.--. +.+..
T Consensus 694 ~llR~a~vigmTTTgaaryr~i-lekv~pkivivEEAAEVlEahiIaal~p~~E---hviLIGDHKQLrP~~~vy~L~q~ 769 (1025)
T KOG1807|consen 694 FLLREADVIGMTTTGAARYRFI-LEKVQPKIVIVEEAAEVLEAHIIAALTPHTE---HVILIGDHKQLRPFSGVYKLPQI 769 (1025)
T ss_pred HHhhccceeeeechhHHHHHHH-HHHhCCcEEEEhhHhHHhhcchhhhhcccce---eEEEecchhhcCCCcchhhHhHh
Confidence 5578999999999998875532 2222466999999999999998777774444 99999999999997654 46677
Q ss_pred CCCCccHHHHHHcC
Q 006311 618 NGLKMSYFERLCLT 631 (651)
Q Consensus 618 ~GL~~SLfERL~~~ 631 (651)
+||..||||||.+.
T Consensus 770 fnL~iSlFERLVe~ 783 (1025)
T KOG1807|consen 770 FNLSISLFERLVEA 783 (1025)
T ss_pred cchhHHHHHHHHHc
Confidence 99999999999985
No 9
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.6e-15 Score=177.20 Aligned_cols=203 Identities=25% Similarity=0.306 Sum_probs=144.2
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCceEEe-CcCCCCCCCCchhH--HHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 420 SNYKLDSDSNSAVHQILSFEGQSPYLLE-GPLCNNFVLSKTGN--VVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 420 ~~~~LN~~Q~~AV~~iL~~~~~~p~LI~-GPPGTGKT~s~~~~--TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
.+..++..|..++...... ...+++. ||+||||| . ++.+.+.+.... ...+++.|+++|.++|....++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 342 (767)
T COG1112 271 INKELDNEQKLAVKRLLSL--NDLFLIHQGPFGTGKT-----RSVTILELIIELLEN-NKLKILPTAESNAAVDNLLRRL 342 (767)
T ss_pred cchhccchhHHHHHHHhcc--cceeEeecCCCCCCcc-----hHHHHHHHHHHHHHh-cccceEEecCcccchhhHHHHH
Confidence 3467899999999988774 4455555 99999999 7 888888887775 4889999999999999999999
Q ss_pred HhhCCCcchhhhccccccccCCcHHHHH---------------------------------------hhhcc--------
Q 006311 497 MKDIPASEMFRANAAFREADGVSDEIFQ---------------------------------------VSLVE-------- 529 (651)
Q Consensus 497 ~~~l~~~~i~Rv~a~~R~~~~v~~~l~~---------------------------------------y~~~~-------- 529 (651)
..........|+....+....+...... .+...
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (767)
T COG1112 343 KRTVIKVELLRIGHPSRVLKKLKLDTLEELLEKHEIPGNKIAALDKVIRELREEGERIIREIAKLRERLERKRLDKISHL 422 (767)
T ss_pred HhhccccceEEcCCcchhhhhhhhhHHHHHHHhcccccchhHHHHHHHHHHhhhhhccceecHHHHhhhhhhHHHHHHHh
Confidence 8854444444444333221111000000 00000
Q ss_pred --c--c---------------------cc-------CCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC
Q 006311 530 --R--E---------------------CF-------SCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 577 (651)
Q Consensus 530 --~--~---------------------~f-------~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ 577 (651)
. . .. ..........+++|++|+++++.... ....||++|||||+|
T Consensus 423 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~---~~~~fd~viiDEAsQ 499 (767)
T COG1112 423 NVALRGILPALNKSEALWISLEEKQKKILKELRRLKKKAVTKILEAADVVLSTLSIAGFSIL---KKYEFDYVIIDEASQ 499 (767)
T ss_pred hhhhcchhHHHHHHHHHHHhhhhhHHhHHHHHhHhHHHHHHHHHHhcCeEEEeccchhHHHh---cccccCEEEEcchhc
Confidence 0 0 00 00112233455699999998876542 233799999999999
Q ss_pred CChHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHcC---------Cccccc
Q 006311 578 ATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT---------EAYRSC 637 (651)
Q Consensus 578 atEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~~---------~~Y~~~ 637 (651)
+++|.+++|+.. ++ ++|++|||+||+|++.+..+...++..|+|+|+... .+|+++
T Consensus 500 ~~~~~~~~~l~~-~~---~~il~GD~kQL~p~~~~~~~~~~~~~~slf~~~~~~~~~~~~~L~~qyRm~ 564 (767)
T COG1112 500 ATEPSALIALSR-AK---KVILVGDHKQLPPTVFFKESSPEGLSASLFERLIDNGPEVVYLLRVQYRMH 564 (767)
T ss_pred ccchhHHHhHhh-cC---eEEEecCCccCCCeecchhhcccchhHhHHHHHHHhCCchheeeeeecccC
Confidence 999999999995 44 999999999999999987667789999999999883 568876
No 10
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=99.64 E-value=1e-15 Score=174.88 Aligned_cols=154 Identities=20% Similarity=0.205 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCC---CeEEEEccChhhHHHHHHHHHhhCC
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK---SRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~---~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
.+.|+.|+..++. ...++|.|+|||||| +|++.++..+.+..+. .+|++||||+.||+.|.+.+.....
T Consensus 147 ~~~Qk~A~~~al~---~~~~vitGgpGTGKT-----t~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~ 218 (586)
T TIGR01447 147 QNWQKVAVALALK---SNFSLITGGPGTGKT-----TTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK 218 (586)
T ss_pred cHHHHHHHHHHhh---CCeEEEEcCCCCCHH-----HHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc
Confidence 3799999999998 679999999999999 8888877766554322 5899999999999999998865221
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp 581 (651)
. +.. .+++..-...... +. |+.+.....+....+.. -+...+|+||||||||...+
T Consensus 219 ~-----l~~--------~~~~~~~~~~~a~-----Ti-----HrlLg~~~~~~~~~~~~-~~~l~~dvlIiDEaSMvd~~ 274 (586)
T TIGR01447 219 N-----LAA--------AEALIAALPSEAV-----TI-----HRLLGIKPDTKRFRHHE-RNPLPLDVLVVDEASMVDLP 274 (586)
T ss_pred c-----ccc--------chhhhhccccccc-----hh-----hhhhcccCCcchhhhcc-cCCCcccEEEEcccccCCHH
Confidence 1 100 0000000000000 00 00000000000011111 12346899999999998877
Q ss_pred hHHHHHhccccCCCeEEEEeCCCCCCcccc
Q 006311 582 ETMIVLGNLANENTRVIVTGAPHNSPSRVR 611 (651)
Q Consensus 582 E~LIpL~~la~~~~rvVLaGD~~QL~PvV~ 611 (651)
... .|......++|+||+||+.||+||-.
T Consensus 275 l~~-~ll~al~~~~rlIlvGD~~QLpsV~~ 303 (586)
T TIGR01447 275 LMA-KLLKALPPNTKLILLGDKNQLPSVEA 303 (586)
T ss_pred HHH-HHHHhcCCCCEEEEECChhhCCCCCC
Confidence 533 33324456789999999999999843
No 11
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.62 E-value=1.4e-15 Score=174.25 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC--CCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 424 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~--~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..+.|+.|+..++. ....+|.|+|||||| +|+..++..+.+.. +..+|++||||+.||..+.+++...+.
T Consensus 153 ~~d~Qk~Av~~a~~---~~~~vItGgpGTGKT-----t~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 153 EVDWQKVAAAVALT---RRISVISGGPGTGKT-----TTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred CCHHHHHHHHHHhc---CCeEEEEeCCCCCHH-----HHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 35899999999887 679999999999999 88888777766532 346899999999999999999865221
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp 581 (651)
... +++++......... +. |+............++. -++.++|+|||||||+..-+
T Consensus 225 ~~~-------------~~~~~~~~~~~~a~-----Ti-----HrlLg~~~~~~~~~~~~-~~~l~~dvlIvDEaSMvd~~ 280 (615)
T PRK10875 225 QLP-------------LTDEQKKRIPEEAS-----TL-----HRLLGAQPGSQRLRYHA-GNPLHLDVLVVDEASMVDLP 280 (615)
T ss_pred ccc-------------cchhhhhcCCCchH-----HH-----HHHhCcCCCccchhhcc-ccCCCCCeEEEChHhcccHH
Confidence 110 00111000000000 00 01111100000000111 13346899999999998765
Q ss_pred hHHHHHhccccCCCeEEEEeCCCCCCcccc
Q 006311 582 ETMIVLGNLANENTRVIVTGAPHNSPSRVR 611 (651)
Q Consensus 582 E~LIpL~~la~~~~rvVLaGD~~QL~PvV~ 611 (651)
....-+. ...+++|+||+||+.||+||=.
T Consensus 281 lm~~ll~-al~~~~rlIlvGD~~QL~sV~~ 309 (615)
T PRK10875 281 MMARLID-ALPPHARVIFLGDRDQLASVEA 309 (615)
T ss_pred HHHHHHH-hcccCCEEEEecchhhcCCCCC
Confidence 5443333 4457799999999999999843
No 12
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=99.57 E-value=4.5e-16 Score=179.43 Aligned_cols=252 Identities=23% Similarity=0.304 Sum_probs=201.0
Q ss_pred CCCccEEEEEEeCcchHHHHHHHHHHhhhhccccccCCCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHhc--cC
Q 006311 366 QPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPY---PSLCPYSNYKLDSDSNSAVHQILSF--EG 440 (651)
Q Consensus 366 ~~~~~~~V~F~~nr~~~rr~h~Al~~~~~~~~~~~LfP~~~~~~~~~~---~~~~~~~~~~LN~~Q~~AV~~iL~~--~~ 440 (651)
.....++.+|..++.++..++.|++.+.. ..+.|+.....+..+. ....+.....+|..|+.|+..+.-. ..
T Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e 139 (775)
T KOG1804|consen 63 DIELEVELQFQLNRAPLCESSFAVERISD---STYKFPFSSLLPSIEWYPEVQWAEKCEPRLNALQKGALLAITVPLLRE 139 (775)
T ss_pred CCcchhhHHHhhhhhhhccccchhhhccc---ccceeeeeccCCCCCCccccccchhcchhhhhhhcccccceecccccc
Confidence 45567888899999999999999999875 3344444332222222 1223334568899999999876543 34
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh-----hCCCcchhhhccccccc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK-----DIPASEMFRANAAFREA 515 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~-----~l~~~~i~Rv~a~~R~~ 515 (651)
..|.++.|+ |+|+| .+++..+...... ...++++|.++++|+|...+++.+ .++....+|+.+..|+.
T Consensus 140 ~~P~L~~G~-~~~~~-----~~~~~~~~~~~~~-~~~k~~~~l~~~~~~~~~ir~y~~~~v~~~~~~~~~~r~~~~~r~l 212 (775)
T KOG1804|consen 140 LPPSLLIGP-GTGET-----LELAQAVKSLLQQ-EEAKILILLHSESAADIYIREYLHPYVEEGLPEATPLRVYSRKRPL 212 (775)
T ss_pred CCcccccCC-ccccc-----eeecchhhccccc-ccccceEeechhHHHHHHHHHhhcccccccccccccccceeecccc
Confidence 679999999 99999 9999988887776 488999999999999999999887 23334455999999998
Q ss_pred cCCcHHHHHhhhcc--ccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhccccC
Q 006311 516 DGVSDEIFQVSLVE--RECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANE 593 (651)
Q Consensus 516 ~~v~~~l~~y~~~~--~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~ 593 (651)
.+.++.+.+||.+. ...|+.|..+.+..|+|++.|...+..+...+.+.+.|+|++.|||+|+++++.+.||+ ++..
T Consensus 213 ~~~~pvv~~~~~if~~~~~~~~pq~~~~~~Hrv~~~~~~~s~~~~~l~~~~~~~t~~~~~eaae~~~~~~l~P~~-~~~~ 291 (775)
T KOG1804|consen 213 AQVNPVVLQYCFIFDSHITFRRPQVEDLFKHRVVVVTLSQSQYLTPLGLPVGFFTHILLDEAAQAMECELLMPLA-LPSS 291 (775)
T ss_pred cccCCceeeeeeeccchhhhccchhhhhcccceeEeecceeecccccCCCCCceeeeeHHHHHhcCCceeecccc-cCCC
Confidence 88999999998654 34566788888888999999999888777788899999999999999999999999999 8888
Q ss_pred CCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHH
Q 006311 594 NTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLC 629 (651)
Q Consensus 594 ~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~ 629 (651)
+++++|+||+.||-|.+.|....+..+. .+..|+.
T Consensus 292 ~~~~~L~~~~~ql~~~l~s~~~~~~~~~-~~~~~~~ 326 (775)
T KOG1804|consen 292 GTRIVLAGPHLQLTPFLNSVAREEQALH-LLLCRLP 326 (775)
T ss_pred Cceeeecccccccccchhhhhhhhhhhh-hcccccc
Confidence 9999999999999999999887766655 4444443
No 13
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.55 E-value=2.6e-14 Score=167.15 Aligned_cols=140 Identities=14% Similarity=0.166 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC-CCeEEEEccChhhHHHHHHHHHhh
Q 006311 421 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-KSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~-~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
...||++|++|+..++. .+..+|.|+|||||| |++.++.+.+.... ..+|++||||+.||+.|.+.+.
T Consensus 321 ~~~l~~~Q~~Ai~~~~~---~~~~iitGgpGTGKT------t~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g-- 389 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ---HKVVILTGGPGTGKT------TITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTG-- 389 (720)
T ss_pred CCCCCHHHHHHHHHHHh---CCeEEEECCCCCCHH------HHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcC--
Confidence 35799999999999876 569999999999999 55566666666532 2789999999999997766542
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
.+...+.|+... ...... .. .. -.....++|||||||+..
T Consensus 390 ~~a~Tih~lL~~-----------------~~~~~~--------------------~~--~~-~~~~~~~llIvDEaSMvd 429 (720)
T TIGR01448 390 LTASTIHRLLGY-----------------GPDTFR--------------------HN--HL-EDPIDCDLLIVDESSMMD 429 (720)
T ss_pred CccccHHHHhhc-----------------cCCccc--------------------hh--hh-hccccCCEEEEeccccCC
Confidence 222222222110 000000 00 00 012358899999999987
Q ss_pred hHhHHHHHhccccCCCeEEEEeCCCCCCccccC
Q 006311 580 EPETMIVLGNLANENTRVIVTGAPHNSPSRVRS 612 (651)
Q Consensus 580 EpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S 612 (651)
.... .-|......++|+||+||+.|||||-..
T Consensus 430 ~~~~-~~Ll~~~~~~~rlilvGD~~QLpsV~~G 461 (720)
T TIGR01448 430 TWLA-LSLLAALPDHARLLLVGDTDQLPSVGPG 461 (720)
T ss_pred HHHH-HHHHHhCCCCCEEEEECccccccCCCCC
Confidence 6543 3343344567899999999999998543
No 14
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=99.52 E-value=4.2e-14 Score=165.95 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..||++|++|+..++.. ...++|.|+|||||| |++.++.++++. .+.+|++||||+.||+.+.+.. .+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s--~~~~il~G~aGTGKT------tll~~i~~~~~~-~g~~V~~~ApTg~Aa~~L~~~~--g~~ 419 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS--GDIAVVVGRAGTGKS------TMLKAAREAWEA-AGYRVIGAALSGKAAEGLQAES--GIE 419 (744)
T ss_pred CCCCHHHHHHHHHHhcC--CCEEEEEecCCCCHH------HHHHHHHHHHHh-CCCeEEEEeCcHHHHHHHHhcc--CCc
Confidence 57999999999999863 468999999999999 556666666665 4889999999999998887543 112
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp 581 (651)
...+-++ +..+ . ...-.....|+|||||||++...
T Consensus 420 a~Ti~~~-------------~~~~--------~------------------------~~~~~~~~~~llIvDEasMv~~~ 454 (744)
T TIGR02768 420 SRTLASL-------------EYAW--------A------------------------NGRDLLSDKDVLVIDEAGMVGSR 454 (744)
T ss_pred eeeHHHH-------------Hhhh--------c------------------------cCcccCCCCcEEEEECcccCCHH
Confidence 1111111 0000 0 00011235799999999998766
Q ss_pred hHHHHHhccccCCCeEEEEeCCCCCCccccCh
Q 006311 582 ETMIVLGNLANENTRVIVTGAPHNSPSRVRSD 613 (651)
Q Consensus 582 E~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~ 613 (651)
...--+......+.++||+||+.|||||-...
T Consensus 455 ~~~~Ll~~~~~~~~kliLVGD~~QLpsVgaG~ 486 (744)
T TIGR02768 455 QMARVLKEAEEAGAKVVLVGDPEQLQPIEAGA 486 (744)
T ss_pred HHHHHHHHHHhcCCEEEEECChHHccccccCc
Confidence 53332221223578999999999999986543
No 15
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=99.48 E-value=1e-13 Score=165.36 Aligned_cols=134 Identities=10% Similarity=0.045 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..||++|++||..+++. ...++|+|+|||||| + +..++.++++. .+.+|++||||+.||..|.+.. .+.
T Consensus 345 ~~Ls~eQr~Av~~il~s--~~v~vv~G~AGTGKT-----T-~l~~~~~~~e~-~G~~V~~~ApTGkAA~~L~e~t--Gi~ 413 (988)
T PRK13889 345 LVLSGEQADALAHVTDG--RDLGVVVGYAGTGKS-----A-MLGVAREAWEA-AGYEVRGAALSGIAAENLEGGS--GIA 413 (988)
T ss_pred CCCCHHHHHHHHHHhcC--CCeEEEEeCCCCCHH-----H-HHHHHHHHHHH-cCCeEEEecCcHHHHHHHhhcc--Ccc
Confidence 57999999999999873 457899999999999 5 45667777765 5889999999999998876432 111
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp 581 (651)
...+-++. .. |. ...-.....++|||||||++...
T Consensus 414 a~TI~sll-------------~~--------~~------------------------~~~~~l~~~~vlIVDEASMv~~~ 448 (988)
T PRK13889 414 SRTIASLE-------------HG--------WG------------------------QGRDLLTSRDVLVIDEAGMVGTR 448 (988)
T ss_pred hhhHHHHH-------------hh--------hc------------------------ccccccccCcEEEEECcccCCHH
Confidence 11111110 00 00 00001234789999999998766
Q ss_pred hHHHHHhccccCCCeEEEEeCCCCCCcccc
Q 006311 582 ETMIVLGNLANENTRVIVTGAPHNSPSRVR 611 (651)
Q Consensus 582 E~LIpL~~la~~~~rvVLaGD~~QL~PvV~ 611 (651)
...--|......+.+|||+||+.||+||-.
T Consensus 449 ~m~~LL~~a~~~garvVLVGD~~QLpsV~a 478 (988)
T PRK13889 449 QLERVLSHAADAGAKVVLVGDPQQLQAIEA 478 (988)
T ss_pred HHHHHHHhhhhCCCEEEEECCHHHcCCCCC
Confidence 544333322246789999999999999843
No 16
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=99.46 E-value=2.6e-13 Score=162.85 Aligned_cols=136 Identities=9% Similarity=0.101 Sum_probs=94.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..||++|++||..++. .....+|+|+|||||| |+..++.++++. .+.+|+.+|||+.||..|.+.. .++
T Consensus 380 ~~Ls~eQ~~Av~~i~~--~~r~~~v~G~AGTGKT------t~l~~~~~~~e~-~G~~V~g~ApTgkAA~~L~e~~--Gi~ 448 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAG--PARIAAVVGRAGAGKT------TMMKAAREAWEA-AGYRVVGGALAGKAAEGLEKEA--GIQ 448 (1102)
T ss_pred CCCCHHHHHHHHHHhc--cCCeEEEEeCCCCCHH------HHHHHHHHHHHH-cCCeEEEEcCcHHHHHHHHHhh--CCC
Confidence 5799999999999864 3578999999999999 555566677765 5889999999999998886544 222
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp 581 (651)
...+-++. ..+ ... .-+...-+++||||||++...
T Consensus 449 a~TIas~l-------------l~~---~~~-----------------------------~~~l~~~~vlVIDEAsMv~~~ 483 (1102)
T PRK13826 449 SRTLSSWE-------------LRW---NQG-----------------------------RDQLDNKTVFVLDEAGMVASR 483 (1102)
T ss_pred eeeHHHHH-------------hhh---ccC-----------------------------ccCCCCCcEEEEECcccCCHH
Confidence 22222210 000 000 001123579999999998877
Q ss_pred hHHHHHhccccCCCeEEEEeCCCCCCccccCh
Q 006311 582 ETMIVLGNLANENTRVIVTGAPHNSPSRVRSD 613 (651)
Q Consensus 582 E~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~ 613 (651)
...--|......+.+|||+||+.||+||-...
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~~QL~~V~aG~ 515 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDPEQLQPIEAGA 515 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCHHHcCCCCCCc
Confidence 65554442234578999999999999986543
No 17
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.38 E-value=2e-12 Score=159.34 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh---CCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR---SPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~---~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..||+.|++|+..+|... ...++|+|+|||||| +++ .+++++++. ..+.+|+.+|||+.||+.|.+.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~-dr~~~IqG~AGTGKT-----T~l-~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~--- 903 (1623)
T PRK14712 834 EKLTSGQRAATRMILETS-DRFTVVQGYAGVGKT-----TQF-RAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSA--- 903 (1623)
T ss_pred cccCHHHHHHHHHHHhCC-CceEEEEeCCCCCHH-----HHH-HHHHHHHHHHhhccCceEEEEechHHHHHHHHHh---
Confidence 479999999999999742 468999999999999 554 344333322 2467899999999999988542
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQa 578 (651)
.+....+-++-... ..+. .....+....+++||||||++
T Consensus 904 Gi~A~TIasfL~~~------------------~~~~-----------------------~~~~~~~~~~~llIVDEASMV 942 (1623)
T PRK14712 904 GVDAQTLASFLHDT------------------QLQQ-----------------------RSGETPDFSNTLFLLDESSMV 942 (1623)
T ss_pred CchHhhHHHHhccc------------------cchh-----------------------hcccCCCCCCcEEEEEccccc
Confidence 33333333321100 0000 000011124689999999999
Q ss_pred ChHhHHHHHhccccCCCeEEEEeCCCCCCccccCh
Q 006311 579 TEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSD 613 (651)
Q Consensus 579 tEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~ 613 (651)
.......-+......++|+||+||++||+||-...
T Consensus 943 ~~~~m~~ll~~~~~~garvVLVGD~~QL~sV~aG~ 977 (1623)
T PRK14712 943 GNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQ 977 (1623)
T ss_pred cHHHHHHHHHhhhhCCCEEEEEcchhhcCCCCCCH
Confidence 88765444442333468999999999999986543
No 18
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.37 E-value=2.2e-12 Score=160.56 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh---CCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR---SPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~---~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..||++|++|+..++... ....+|+|.|||||| |+..++..+++. ..+.+|+.||||+.||..|.+ .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~-dr~~~I~G~AGTGKT------T~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e---~ 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILEST-DRFTVVQGYAGVGKT------TQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS---A 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCHH------HHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh---c
Confidence 468999999999999732 469999999999999 555555555542 235689999999999987754 1
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQa 578 (651)
.+....+.|+-... ..+. .+.+.+....+++||||||+.
T Consensus 1036 Gi~A~TI~s~L~~~------------------~~~~-----------------------~~~~~~~~~~~llIVDEaSMv 1074 (1747)
T PRK13709 1036 GVDAQTLASFLHDT------------------QLQQ-----------------------RSGETPDFSNTLFLLDESSMV 1074 (1747)
T ss_pred CcchhhHHHHhccc------------------cccc-----------------------ccccCCCCCCcEEEEEccccc
Confidence 33333333321100 0000 000011124589999999998
Q ss_pred ChHhHHHHHhccccCCCeEEEEeCCCCCCccccC
Q 006311 579 TEPETMIVLGNLANENTRVIVTGAPHNSPSRVRS 612 (651)
Q Consensus 579 tEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S 612 (651)
......--+......++|+||+||++||+||-..
T Consensus 1075 ~~~~m~~Ll~~~~~~garvVLVGD~~QL~sV~aG 1108 (1747)
T PRK13709 1075 GNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPG 1108 (1747)
T ss_pred cHHHHHHHHHhhhcCCCEEEEecchHhcCCCCCC
Confidence 8776555555222346899999999999998544
No 19
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=99.33 E-value=1.6e-12 Score=150.27 Aligned_cols=200 Identities=20% Similarity=0.275 Sum_probs=139.8
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh-hCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK-DIP 501 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~-~l~ 501 (651)
+.|+.|-+|+.. +..++.+.+.|||||||| .+.+.++.-++.+.|..|-||+++||.|-..+-+++.. +.+
T Consensus 738 ~ft~~qveai~s---g~qpgltmvvgppgtgkt-----d~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d 809 (1320)
T KOG1806|consen 738 KFTPTQVEAILS---GMQPGLTMVVGPPGTGKT-----DVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVD 809 (1320)
T ss_pred ccCHHHHHHHHh---cCCCCceeeecCCCCCCc-----chhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccc
Confidence 448899888875 344889999999999999 99999888888888999999999999999999999987 344
Q ss_pred Ccchhhhcccccccc--------------------------------CCcHHHHHhhhcc--------------------
Q 006311 502 ASEMFRANAAFREAD--------------------------------GVSDEIFQVSLVE-------------------- 529 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~--------------------------------~v~~~l~~y~~~~-------------------- 529 (651)
...++|++...-+++ .++.++. ||...
T Consensus 810 ~rhLlrlg~ge~eletd~dfsrygrvn~~l~~r~~ll~ev~rla~sl~~pgdv~-ytcetagyf~~~~V~~~wee~l~~v 888 (1320)
T KOG1806|consen 810 ERHLLRLGHGEEELETDKDFSRYGRVNYVLSRRLELLREVERLAKSLQAPGDVD-YTCETAGYFFLAYVKRRWEEYLAKV 888 (1320)
T ss_pred hhhHHHhcccHHhhhcccchhheeeEeeeeccchHHHHHHHHhhhhhcCccccc-cccchhhhhhhhHHHhhhHHHHHHh
Confidence 444555541110000 0000000 00000
Q ss_pred ------------------------------------------cccc----------------CCCh-------hhhhccc
Q 006311 530 ------------------------------------------RECF----------------SCPP-------LEELRQY 544 (651)
Q Consensus 530 ------------------------------------------~~~f----------------~~p~-------~~~L~~~ 544 (651)
.++| ..+. --...++
T Consensus 889 ~~~~~~~~~~~~~~~fpf~~~f~d~p~~vfeg~n~~~d~~~a~~cf~hl~~ifqqLee~rafellr~~~dr~~Yll~kqa 968 (1320)
T KOG1806|consen 889 DKGCDKDSVDIVSNRFPFHSYFGDKPKPPFEGYNKENDMDYATGCFRHLEYIFQQLEEFRAFELLRSGEDRELYLLVKQA 968 (1320)
T ss_pred ccCCCchhhhhHhhhCcchhhhhcCCCccccccchhhhhhhhhhhHHHHHHHHHHHHhcccccccccchhHhhccCcccc
Confidence 0011 0000 0112688
Q ss_pred ceEeeehhcchhhhhcCCCCC-CccEEEEecCCCCChHhHHHHHhccccCC-----CeEEEEeCCCCCCccccC-hHHHh
Q 006311 545 KVISSTFVSSFRLHNQGITAG-HFSHIFLIDASSATEPETMIVLGNLANEN-----TRVIVTGAPHNSPSRVRS-DIARK 617 (651)
Q Consensus 545 rIVvtT~ssa~~l~~~~~~~~-~F~~IiIDEAsQatEpE~LIpL~~la~~~-----~rvVLaGD~~QL~PvV~S-~~a~~ 617 (651)
+||.+||..+..-...-+..| .||-+++.||+|..|-|+.+|+...+..+ +|+|+.|||.|+||++.. .++..
T Consensus 969 kiiamtcthaalkr~el~~lgf~ydnl~mEesaqile~etfiplLlq~p~dg~~rlkr~iligdhhqlPPv~~n~afqky 1048 (1320)
T KOG1806|consen 969 KIIAMTCTHAALRRGDLVKLGFKYDNLLMEESAQILEIETFIPLLLQNPQDGHNRLKRWILIGDHHQLPPVVKNQAFQKY 1048 (1320)
T ss_pred eeeecccCChhhChhhHhhhceeechhhhhhccCCcccccccHHHhcCCcchhhHhhheeecccccccCCcccchHHHHH
Confidence 999999998764332222222 48999999999999999999998655443 599999999999999954 46666
Q ss_pred CCCCccHHHHHHcC
Q 006311 618 NGLKMSYFERLCLT 631 (651)
Q Consensus 618 ~GL~~SLfERL~~~ 631 (651)
...++|||.|+...
T Consensus 1049 snm~qslf~r~vRl 1062 (1320)
T KOG1806|consen 1049 SNMEQSLFTRLVRL 1062 (1320)
T ss_pred hcchhhhhhcceec
Confidence 77889999999774
No 20
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.31 E-value=9e-12 Score=158.40 Aligned_cols=147 Identities=11% Similarity=0.130 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..||++|++||..++.. +....+|+|+|||||| |++.++.++++. .+.+|.+||||+.||..|.+.... .
T Consensus 428 ~~Ls~~Q~~Av~~il~s-~~~v~ii~G~aGTGKT------t~l~~l~~~~~~-~G~~V~~lAPTgrAA~~L~e~~g~--~ 497 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTS-TKRFIIINGFGGTGST------EIAQLLLHLASE-QGYEIQIITAGSLSAQELRQKIPR--L 497 (1960)
T ss_pred CCCCHHHHHHHHHHHhC-CCCeEEEEECCCCCHH------HHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHhcc--h
Confidence 47999999999999973 3579999999999999 666667777775 588999999999999998877532 2
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp 581 (651)
...+.|+.... ..... ..|.. +.+ ....+...-++|||||||++.-.
T Consensus 498 A~Ti~~~l~~l---------------~~~~~---------------~~tv~--~fl-~~~~~l~~~~vlIVDEAsMl~~~ 544 (1960)
T TIGR02760 498 ASTFITWVKNL---------------FNDDQ---------------DHTVQ--GLL-DKSSPFSNKDIFVVDEANKLSNN 544 (1960)
T ss_pred hhhHHHHHHhh---------------ccccc---------------chhHH--Hhh-cccCCCCCCCEEEEECCCCCCHH
Confidence 22333221100 00000 00000 000 11112235689999999999888
Q ss_pred hHHHHHhccccCCCeEEEEeCCCCCCcccc
Q 006311 582 ETMIVLGNLANENTRVIVTGAPHNSPSRVR 611 (651)
Q Consensus 582 E~LIpL~~la~~~~rvVLaGD~~QL~PvV~ 611 (651)
+..--+......++||||+||+.||++|=.
T Consensus 545 ~~~~Ll~~a~~~garvVlvGD~~QL~sV~a 574 (1960)
T TIGR02760 545 ELLKLIDKAEQHNSKLILLNDSAQRQGMSA 574 (1960)
T ss_pred HHHHHHHHHhhcCCEEEEEcChhhcCcccc
Confidence 766655523346789999999999999743
No 21
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.25 E-value=2.6e-11 Score=154.33 Aligned_cols=137 Identities=13% Similarity=0.105 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHH---HHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVR---EAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~Tlv---eaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..||++|++|+..|+... ....+|+|+|||||| +++. .++.++++. .+.+|+.+|||+.||+.|.+ .
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~-~~~~~i~G~AGtGKT-----t~l~~~~~~i~~~~~~-~g~~v~glApT~~Aa~~L~~---~ 1087 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTK-DRFVAVQGLAGVGKT-----TMLESRYKPVLQAFES-EQLQVIGLAPTHEAVGELKS---A 1087 (1960)
T ss_pred CCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCHH-----HhHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHh---c
Confidence 479999999999999742 458899999999999 5553 455666654 47799999999999998853 1
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQa 578 (651)
.+....+-++-.. ...+. ... ....-+++||||||++
T Consensus 1088 g~~a~Ti~s~l~~------------------~~~~~-----------------------~~~--~~~~~~v~ivDEasMv 1124 (1960)
T TIGR02760 1088 GVQAQTLDSFLTD------------------ISLYR-----------------------NSG--GDFRNTLFILDESSMV 1124 (1960)
T ss_pred CCchHhHHHHhcC------------------ccccc-----------------------ccC--CCCcccEEEEEccccc
Confidence 2222222211100 00000 000 1124589999999998
Q ss_pred ChHhHHHHHhccccCCCeEEEEeCCCCCCcccc
Q 006311 579 TEPETMIVLGNLANENTRVIVTGAPHNSPSRVR 611 (651)
Q Consensus 579 tEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~ 611 (651)
......--+......+.++||+||+.||+||=.
T Consensus 1125 ~~~~~~~l~~~~~~~~ak~vlvGD~~QL~sV~a 1157 (1960)
T TIGR02760 1125 SNFQLTHATELVQKSGSRAVSLGDIAQLQSLAA 1157 (1960)
T ss_pred cHHHHHHHHHhccCCCCEEEEeCChhhcCCCCC
Confidence 877655555423345689999999999999743
No 22
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=99.24 E-value=1.8e-11 Score=132.84 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHhc---cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHH-HHHHH
Q 006311 423 KLDSDSNSAVHQILSF---EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKL-MECLM 497 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~---~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l-~~rL~ 497 (651)
+||++|+.++..++.. ..+..+.|.||+||||| ++..++...++. .+..|++||+|..||-++ --+..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs------~l~~~i~~~~~~-~~~~~~~~a~tg~AA~~i~~G~T~ 72 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS------FLIKAIIDYLRS-RGKKVLVTAPTGIAAFNIPGGRTI 72 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh------HHHHHHHHHhcc-ccceEEEecchHHHHHhccCCcch
Confidence 5899999999988654 23567799999999999 566666666664 578999999999999887 43333
No 23
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=99.22 E-value=2.8e-11 Score=141.10 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
.||++|++||.. ..+|++|.|+|||||| .||+..|..++.. .+..+||++|+||.||+.+.+|+...+
T Consensus 2 ~Ln~~Q~~av~~-----~~g~~lV~AgpGSGKT-----~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF-----VTGPCLVLAGAGSGKT-----RVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC-----CCCCEEEEecCCCCHH-----HHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 599999999975 2569999999999999 9999999999864 356799999999999999999998744
Q ss_pred C
Q 006311 501 P 501 (651)
Q Consensus 501 ~ 501 (651)
+
T Consensus 72 ~ 72 (672)
T PRK10919 72 G 72 (672)
T ss_pred C
Confidence 3
No 24
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=99.16 E-value=6.9e-11 Score=138.88 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..||++|++||.. ..+|++|.|+|||||| +||+..|..++.. .+..+||++|+||.||+.+.+|+.+.
T Consensus 8 ~~Ln~~Q~~av~~-----~~g~~lV~AgaGSGKT-----~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA-----PLGNMLVLAGAGSGKT-----RVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC-----CCCCEEEEecCCCCHH-----HHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 3699999999975 2469999999999999 9999999998863 35679999999999999999999874
Q ss_pred CC
Q 006311 500 IP 501 (651)
Q Consensus 500 l~ 501 (651)
+.
T Consensus 78 ~~ 79 (721)
T PRK11773 78 LG 79 (721)
T ss_pred hc
Confidence 43
No 25
>KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification]
Probab=99.15 E-value=7.6e-11 Score=139.88 Aligned_cols=99 Identities=24% Similarity=0.246 Sum_probs=82.3
Q ss_pred ccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCc
Q 006311 543 QYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKM 622 (651)
Q Consensus 543 ~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~ 622 (651)
.+.+|++|+++++...... ....|+.++||||+|+.||+.++||. ++ ..++.+|+||+.|||++|.|..|..++++.
T Consensus 514 ~a~~i~~t~~~~~~~~~~~-~~~p~~~vviDeaaq~~e~~s~~PL~-l~-g~~~~~lvgd~~qlP~~V~s~~~~~~k~~~ 590 (827)
T KOG1801|consen 514 EAALIVPTTRGSRIVLTLY-GGPPLDTVVIDEAAQKYEPSSLEPLQ-LA-GYQHCILVGDLAQLPATVHSSPAGCFKYMT 590 (827)
T ss_pred cceeEeecccccceEeecc-cCCCceEEEEehhhhhcCccchhhhh-hc-CCceEEEecccccCChhhccchhccccchh
Confidence 7889999999887633321 23459999999999999999999999 54 456999999999999999999999999999
Q ss_pred cHHHHHHcC--------Cccccc-------Cccchhh
Q 006311 623 SYFERLCLT--------EAYRSC-------NSMFFSQ 644 (651)
Q Consensus 623 SLfERL~~~--------~~Y~~~-------~~~fvtk 644 (651)
|||+||... -+|++| +..|+.+
T Consensus 591 slf~rl~l~~~~~~~L~vqyrmhp~Is~fP~~~fy~~ 627 (827)
T KOG1801|consen 591 SLFERLELAGHKTLLLTVQYRMHPEISRFPSKEFYGG 627 (827)
T ss_pred hHHHHHHHccCccceecceeecCCccccCcccccccc
Confidence 999999773 367787 5566655
No 26
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=99.13 E-value=9.4e-11 Score=137.63 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..||++|++||.. ..+|++|.|.|||||| +||+..|..++.. .+..+||++|+||.||+++.+|+.+.
T Consensus 3 ~~Ln~~Q~~av~~-----~~g~~lV~AgaGSGKT-----~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA-----PPGNLLVLAGAGSGKT-----RVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC-----CCCCEEEEecCCCCHH-----HHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 3699999999975 2469999999999999 9999999999874 35679999999999999999999875
Q ss_pred CC
Q 006311 500 IP 501 (651)
Q Consensus 500 l~ 501 (651)
++
T Consensus 73 ~~ 74 (715)
T TIGR01075 73 LG 74 (715)
T ss_pred hc
Confidence 43
No 27
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=99.13 E-value=3.4e-10 Score=113.81 Aligned_cols=169 Identities=19% Similarity=0.221 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 502 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~ 502 (651)
.+|.+|+.|+..++. ...+++.||+||||| +..+++.++.+......||+++-|.-.+. +.+- .+|+
T Consensus 4 p~~~~Q~~~~~al~~---~~~v~~~G~AGTGKT-----~LA~a~Al~~v~~g~~~kiii~Rp~v~~~----~~lG-flpG 70 (205)
T PF02562_consen 4 PKNEEQKFALDALLN---NDLVIVNGPAGTGKT-----FLALAAALELVKEGEYDKIIITRPPVEAG----EDLG-FLPG 70 (205)
T ss_dssp --SHHHHHHHHHHHH----SEEEEE--TTSSTT-----HHHHHHHHHHHHTTS-SEEEEEE-S--TT---------SS--
T ss_pred CCCHHHHHHHHHHHh---CCeEEEECCCCCcHH-----HHHHHHHHHHHHhCCCcEEEEEecCCCCc----cccc-cCCC
Confidence 579999999999996 679999999999999 77777777777766677888887766552 2221 2333
Q ss_pred cchhhhccccccccCCcHHHHHhhhc----cccccCCC-hhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC
Q 006311 503 SEMFRANAAFREADGVSDEIFQVSLV----ERECFSCP-PLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 577 (651)
Q Consensus 503 ~~i~Rv~a~~R~~~~v~~~l~~y~~~----~~~~f~~p-~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ 577 (651)
. ..+.+.+|..- -...+... -...+.+.+|-+....... ...+ .-++||||||..
T Consensus 71 ~--------------~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iR---Grt~---~~~~iIvDEaQN 130 (205)
T PF02562_consen 71 D--------------LEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIR---GRTF---DNAFIIVDEAQN 130 (205)
T ss_dssp ---------------------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT---T--B----SEEEEE-SGGG
T ss_pred C--------------HHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhc---Cccc---cceEEEEecccC
Confidence 2 11111111110 01111111 1233455666666554331 1222 247999999977
Q ss_pred CChHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHc
Q 006311 578 ATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL 630 (651)
Q Consensus 578 atEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~ 630 (651)
++-.+.-.-|. -...+.++|+.||+.|.--. .....||.. +.||+-.
T Consensus 131 ~t~~~~k~ilT-R~g~~skii~~GD~~Q~D~~----~~~~nGl~~-~~~~~~~ 177 (205)
T PF02562_consen 131 LTPEELKMILT-RIGEGSKIIITGDPSQIDLP----LDYNNGLTY-AIERLKG 177 (205)
T ss_dssp --HHHHHHHHT-TB-TT-EEEEEE------------------THH-HHHHTTT
T ss_pred CCHHHHHHHHc-ccCCCcEEEEecCceeecCC----CCCCchHHH-HHHHhcC
Confidence 77767666666 45678999999999997433 113455432 4555544
No 28
>PF13245 AAA_19: Part of AAA domain
Probab=99.13 E-value=1e-10 Score=99.81 Aligned_cols=59 Identities=25% Similarity=0.456 Sum_probs=50.3
Q ss_pred HHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHHHHH
Q 006311 431 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 431 AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~~rL 496 (651)
||..++. +.+.++|.|||||||| .|+++++..++.. .++.+||++++||.|+|++.+|+
T Consensus 2 av~~al~--~~~~~vv~g~pGtGKT-----~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALA--GSPLFVVQGPPGTGKT-----TTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHh--hCCeEEEECCCCCCHH-----HHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 6665565 3567788999999999 9999999998853 34789999999999999999999
No 29
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=99.11 E-value=2e-10 Score=135.02 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..||++|++||.. ..+|.+|.|+|||||| .||++.|..++.. .+..+||+.|+||.||+++.+|+.+.
T Consensus 3 ~~Ln~~Q~~av~~-----~~g~~lV~AgaGSGKT-----~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT-----TEGPLLIMAGAGSGKT-----RVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC-----CCCCEEEEeCCCCCHH-----HHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 3699999999975 2569999999999999 9999999999864 25579999999999999999999864
Q ss_pred C
Q 006311 500 I 500 (651)
Q Consensus 500 l 500 (651)
+
T Consensus 73 ~ 73 (726)
T TIGR01073 73 L 73 (726)
T ss_pred h
Confidence 3
No 30
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=99.09 E-value=3.3e-10 Score=131.79 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
.||++|++||.. ..++.+|.|+|||||| .||+..|..++.. .+..+||++|+||.||+++-+|+...+
T Consensus 1 ~Ln~~Q~~av~~-----~~~~~~V~Ag~GSGKT-----~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY-----VTGPCLVLAGAGSGKT-----RVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC-----CCCCEEEEecCCCCHH-----HHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 489999999975 2569999999999999 9999999999864 256799999999999999999998754
Q ss_pred C
Q 006311 501 P 501 (651)
Q Consensus 501 ~ 501 (651)
+
T Consensus 71 ~ 71 (664)
T TIGR01074 71 G 71 (664)
T ss_pred C
Confidence 3
No 31
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.09 E-value=7.8e-10 Score=105.19 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=102.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..+++.|.+++..++.. ....+|.||+||||| .+++.++.+.+...+..++|+++|++.+++.+..++.+...
T Consensus 7 ~~~~~~Q~~~~~~~~~~--~~~~~i~~~~GsGKT-----~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 7 EPLRPYQKEAIEALLSG--LRDVILAAPTGSGKT-----LAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred CCCCHHHHHHHHHHHcC--CCcEEEECCCCCchh-----HHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 57899999999998872 178999999999999 88888888888765568999999999999999988876433
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhccc-ceEeeehhcchhhhhcC-CCCCCccEEEEecCCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQY-KVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~-rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDEAsQat 579 (651)
.....+.... ..... ...+ .+..... .|+++|........... .....+++||||||....
T Consensus 80 ~~~~~~~~~~----~~~~~-~~~~------------~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 142 (201)
T smart00487 80 SLGLKVVGLY----GGDSK-REQL------------RKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLL 142 (201)
T ss_pred cCCeEEEEEe----CCcch-HHHH------------HHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHh
Confidence 2110111100 00000 0000 0111222 88888877555444322 355578999999997766
Q ss_pred h-H--hHHHHHhccc-cCCCeEEEEeCCCC
Q 006311 580 E-P--ETMIVLGNLA-NENTRVIVTGAPHN 605 (651)
Q Consensus 580 E-p--E~LIpL~~la-~~~~rvVLaGD~~Q 605 (651)
+ . +.+..+.... .....+++.|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 143 DGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred cCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 4 1 3333333222 23346667776543
No 32
>PRK10536 hypothetical protein; Provisional
Probab=98.98 E-value=2.1e-09 Score=111.31 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=89.7
Q ss_pred CCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 421 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
-...|..|..++..+.. ...+++.||+||||| +....+..+.+......+|+++-|+-.+.+. ...+
T Consensus 57 i~p~n~~Q~~~l~al~~---~~lV~i~G~aGTGKT-----~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~-----LGfL 123 (262)
T PRK10536 57 ILARNEAQAHYLKAIES---KQLIFATGEAGCGKT-----WISAAKAAEALIHKDVDRIIVTRPVLQADED-----LGFL 123 (262)
T ss_pred ccCCCHHHHHHHHHHhc---CCeEEEECCCCCCHH-----HHHHHHHHHHHhcCCeeEEEEeCCCCCchhh-----hCcC
Confidence 35789999999998766 569999999999999 6665655545533345567776555544322 2234
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh---cccceEeeehhcchhhhhcCCCCCCccEEEEecCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL---RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 577 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L---~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ 577 (651)
|+..-=.+..+.+. +-+.+..+ +..-..+.+ .+.+|.+....- +....+ .-++||||||+.
T Consensus 124 PG~~~eK~~p~~~p---i~D~L~~~-------~~~~~~~~~~~~~~~~Iei~~l~y---mRGrtl---~~~~vIvDEaqn 187 (262)
T PRK10536 124 PGDIAEKFAPYFRP---VYDVLVRR-------LGASFMQYCLRPEIGKVEIAPFAY---MRGRTF---ENAVVILDEAQN 187 (262)
T ss_pred CCCHHHHHHHHHHH---HHHHHHHH-------hChHHHHHHHHhccCcEEEecHHH---hcCCcc---cCCEEEEechhc
Confidence 44311111111111 11111110 000001111 234455554331 222212 347999999988
Q ss_pred CChHhHHHHHhccccCCCeEEEEeCCCCCC
Q 006311 578 ATEPETMIVLGNLANENTRVIVTGAPHNSP 607 (651)
Q Consensus 578 atEpE~LIpL~~la~~~~rvVLaGD~~QL~ 607 (651)
++..+.-.-|. -...++++|++||+.|.-
T Consensus 188 ~~~~~~k~~lt-R~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 188 VTAAQMKMFLT-RLGENVTVIVNGDITQCD 216 (262)
T ss_pred CCHHHHHHHHh-hcCCCCEEEEeCChhhcc
Confidence 88877766666 456789999999999964
No 33
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.96 E-value=4.9e-09 Score=93.82 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=78.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEI 522 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l 522 (651)
-.+|.||+||||| .++..++.+........++++++|++..++...+++...... ..++...... .....
T Consensus 2 ~~~i~~~~G~GKT-----~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~ 71 (144)
T cd00046 2 DVLLAAPTGSGKT-----LAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGG---TSIKQ 71 (144)
T ss_pred CEEEECCCCCchh-----HHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecC---cchhH
Confidence 3689999999999 999999888887656789999999999999999888763321 1111111000 00000
Q ss_pred HHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCCCCCccEEEEecCCCCChHhH
Q 006311 523 FQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDASSATEPET 583 (651)
Q Consensus 523 ~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~~IiIDEAsQatEpE~ 583 (651)
. .........|+++|.......... ....+.+++||||||....+...
T Consensus 72 ~-------------~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~ 120 (144)
T cd00046 72 Q-------------EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF 120 (144)
T ss_pred H-------------HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcch
Confidence 0 012235778899998866544322 22345799999999977766654
No 34
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.80 E-value=5.9e-09 Score=99.58 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHhc--c--CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 423 KLDSDSNSAVHQILSF--E--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~--~--~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+|.+.|.+|+..++.. . ....++|.||+||||| .++++++.++.. ++++++|+.+-++...+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT-----~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKT-----IIALALILELAR-----KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHH-----HHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcC-----hhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHH
Confidence 5789999999999964 1 2578999999999999 999888887766 999999999999999988843
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc------------CCCCCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ------------GITAGH 566 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~------------~~~~~~ 566 (651)
................ .. .......................++++|.......... ......
T Consensus 73 ~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPA---YD---SKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNK 146 (184)
T ss_dssp HSTTSEEEEE--GGGC---CE----SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGS
T ss_pred hhhhhhhhcccccccc---cc---cccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcccc
Confidence 2221111110000000 00 00000000000111112235667888888766544321 123347
Q ss_pred ccEEEEecCCCCChHhH
Q 006311 567 FSHIFLIDASSATEPET 583 (651)
Q Consensus 567 F~~IiIDEAsQatEpE~ 583 (651)
+++||+|||-++..-..
T Consensus 147 ~~~vI~DEaH~~~~~~~ 163 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDSS 163 (184)
T ss_dssp ESEEEEETGGCTHHHHH
T ss_pred CCEEEEehhhhcCCHHH
Confidence 89999999988776653
No 35
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.78 E-value=7.6e-09 Score=107.42 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC--CCCeEEEEccChhhHHHHHHHHHh
Q 006311 424 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~--~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
||++|+++|.. . .++.+|.|+|||||| +|+++.+..++... +..+||+.|+||.||+.+.+|+..
T Consensus 1 l~~eQ~~~i~~-~----~~~~lV~a~AGSGKT-----~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS-T----EGPLLVNAGAGSGKT-----TTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS------SSEEEEEE-TTSSHH-----HHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-C----CCCEEEEeCCCCCch-----HHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 79999999987 2 569999999999999 99999999988764 567999999999999999999987
No 36
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.76 E-value=5.8e-08 Score=92.12 Aligned_cols=131 Identities=20% Similarity=0.176 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcc
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASE 504 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~ 504 (651)
++.|.+|+..+++ ..-++|.||+|+||| ....-.+++.+......++++.+|+.+.++...+++.+.... .
T Consensus 1 t~~Q~~~~~~i~~---~~~~li~aptGsGKT-----~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~ 71 (169)
T PF00270_consen 1 TPLQQEAIEAIIS---GKNVLISAPTGSGKT-----LAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-T 71 (169)
T ss_dssp -HHHHHHHHHHHT---TSEEEEECSTTSSHH-----HHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-T
T ss_pred CHHHHHHHHHHHc---CCCEEEECCCCCccH-----HHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-c
Confidence 3689999999996 345999999999999 777777777676544569999999999999999999874433 1
Q ss_pred hhhhccccccccCCcHHHHHhhhccccccCCChhhhh-cccceEeeehhcchhhhhcC-CCCCCccEEEEecCCCCCh
Q 006311 505 MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 505 i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L-~~~rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDEAsQatE 580 (651)
-+++... ..+...... ....+ .+++|+++|......+...+ ....+.++||||||-+...
T Consensus 72 ~~~~~~~---~~~~~~~~~-------------~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 72 NVRVVLL---HGGQSISED-------------QREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp TSSEEEE---STTSCHHHH-------------HHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH
T ss_pred ccccccc---ccccccccc-------------ccccccccccccccCcchhhccccccccccccceeeccCccccccc
Confidence 1111111 001110000 01122 46899999999876655431 2334589999999965544
No 37
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.75 E-value=2.7e-08 Score=106.42 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=109.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 417 CPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 417 ~~~~~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
..|.-...|.+|+-|+...+. ..-+.+.+.|..||||| ...+|+++.|.+......+|+|.-|+-.-- +.+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld-~dI~lV~L~G~AGtGKT----lLALaAgleqv~e~~~y~KiiVtRp~vpvG----~dI 292 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLD-DDIDLVSLGGKAGTGKT----LLALAAGLEQVLERKRYRKIIVTRPTVPVG----EDI 292 (436)
T ss_pred hhhccCcccHHHHHHHHHhcC-CCCCeEEeeccCCccHh----HHHHHHHHHHHHHHhhhceEEEecCCcCcc----ccc
Confidence 345556789999999998776 34678899999999999 466788899999887777888887764322 111
Q ss_pred HhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCC
Q 006311 497 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 576 (651)
Q Consensus 497 ~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs 576 (651)
-.+|+.+=-.+..|.. .+-+.+.-....+... ...-.+.+...+|=+-.++-. ....+ +=..||||||.
T Consensus 293 -GfLPG~eEeKm~PWmq---~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~I---RGRSl---~~~FiIIDEaQ 361 (436)
T COG1875 293 -GFLPGTEEEKMGPWMQ---AIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYI---RGRSL---PDSFIIIDEAQ 361 (436)
T ss_pred -CcCCCchhhhccchHH---HHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeee---ccccc---ccceEEEehhh
Confidence 1445543333333321 2222221111111000 000112233334333322211 11122 23479999995
Q ss_pred CCChHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHcCCcc
Q 006311 577 SATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLTEAY 634 (651)
Q Consensus 577 QatEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~~~~Y 634 (651)
. .+|.-+--|..-+.++++|||.||+.|.--.-.... ..|| ..+-||+-..+.|
T Consensus 362 N-LTpheikTiltR~G~GsKIVl~gd~aQiD~~yl~~~--snGL-tyvverfk~~~l~ 415 (436)
T COG1875 362 N-LTPHELKTILTRAGEGSKIVLTGDPAQIDTPYLDET--SNGL-TYVVEKFKGHPLS 415 (436)
T ss_pred c-cCHHHHHHHHHhccCCCEEEEcCCHHHcCCccccCC--CccH-HHHHHHhcCCCce
Confidence 5 555444444447888999999999999853322211 1332 3456776665554
No 38
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=98.71 E-value=3e-08 Score=115.26 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC--CCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~--~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
.||++|++||... .+|.+|.+.|||||| .|+++.|.+++... ...+||+.|.||.||..+.+|+.+.+
T Consensus 2 ~Ln~~Q~~av~~~-----~gp~lV~AGaGsGKT-----~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~ 71 (655)
T COG0210 2 KLNPEQREAVLHP-----DGPLLVLAGAGSGKT-----RVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLL 71 (655)
T ss_pred CCCHHHHHHHhcC-----CCCeEEEECCCCCch-----hhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHh
Confidence 6999999999873 569999999999999 99999999998863 34579999999999999999999854
Q ss_pred C
Q 006311 501 P 501 (651)
Q Consensus 501 ~ 501 (651)
.
T Consensus 72 ~ 72 (655)
T COG0210 72 G 72 (655)
T ss_pred C
Confidence 3
No 39
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.60 E-value=2.6e-07 Score=90.91 Aligned_cols=135 Identities=15% Similarity=0.087 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC---CCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---PKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~---~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..+++.|++|+..++. ..-.+|.+|+|+||| .+.+..+++.+... .+.++++++|+..-+....+.+..
T Consensus 20 ~~~~~~Q~~~~~~~~~---~~~~li~~~TG~GKT-----~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~ 91 (203)
T cd00268 20 EKPTPIQARAIPPLLS---GRDVIGQAQTGSGKT-----AAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARK 91 (203)
T ss_pred CCCCHHHHHHHHHHhc---CCcEEEECCCCCcHH-----HHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHH
Confidence 3589999999999987 346899999999999 77555544444433 567999999999999988877765
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh-cccceEeeehhcchhhh-hcCCCCCCccEEEEecCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDAS 576 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L-~~~rIVvtT~ssa~~l~-~~~~~~~~F~~IiIDEAs 576 (651)
...... +++.... ...+. ......+ .+..|+++|........ ...+....++++|||||-
T Consensus 92 ~~~~~~-~~~~~~~---~~~~~--------------~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 92 LGKHTN-LKVVVIY---GGTSI--------------DKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred HhccCC-ceEEEEE---CCCCH--------------HHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 221111 1111000 00000 0001122 36789999976554332 222344568999999997
Q ss_pred CCChHh
Q 006311 577 SATEPE 582 (651)
Q Consensus 577 QatEpE 582 (651)
.+.+..
T Consensus 154 ~~~~~~ 159 (203)
T cd00268 154 RMLDMG 159 (203)
T ss_pred HhhccC
Confidence 765544
No 40
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.56 E-value=2e-07 Score=107.99 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=96.9
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..+-..|..||.++... .++.-.||.--+||||| .|.+.+|.++++....+|||..|-.|+-+|+......++
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKT-----rTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKT-----RTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcc-----eeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHh
Confidence 45678999999998864 34445899999999999 999999999999988899999999999999999888776
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhh------hcCCCCCCccEEEEe
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH------NQGITAGHFSHIFLI 573 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~------~~~~~~~~F~~IiID 573 (651)
+|.....-.-.. +.....++|.++|+-+..... ...+.+||||+||||
T Consensus 239 ~P~~~~~n~i~~--------------------------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvID 292 (875)
T COG4096 239 LPFGTKMNKIED--------------------------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVID 292 (875)
T ss_pred CCCccceeeeec--------------------------ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEec
Confidence 665432211000 111135789999998664332 245789999999999
Q ss_pred cCCCC
Q 006311 574 DASSA 578 (651)
Q Consensus 574 EAsQa 578 (651)
||...
T Consensus 293 EaHRg 297 (875)
T COG4096 293 EAHRG 297 (875)
T ss_pred hhhhh
Confidence 99764
No 41
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=98.55 E-value=5.6e-08 Score=97.69 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=32.4
Q ss_pred CccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCCCccccCh
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSD 613 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~ 613 (651)
.+++++||||....--+.+. +... .....++++|||.|.+..-++.
T Consensus 62 ~~~~liiDE~~~~~~g~l~~-l~~~-~~~~~~~l~GDp~Q~~~~~~~~ 107 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGYLLL-LLSL-SPAKNVILFGDPLQIPYISRND 107 (234)
T ss_pred cCCEEEEeccccCChHHHHH-HHhh-ccCcceEEEECchhccCCcccc
Confidence 58999999997665434433 4422 2335899999999998775544
No 42
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.52 E-value=7.7e-07 Score=84.83 Aligned_cols=123 Identities=17% Similarity=0.183 Sum_probs=78.9
Q ss_pred CceEEeCcCCCCCCCCchhH-HHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcH
Q 006311 442 SPYLLEGPLCNNFVLSKTGN-VVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSD 520 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~-TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~ 520 (651)
...+|.=.||+||| . +|.+.+.+.++. +.|+||++||...++++.+-|.. ..+|+....+.
T Consensus 5 ~~~~~d~hpGaGKT-----r~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~-----~~~~~~t~~~~------ 66 (148)
T PF07652_consen 5 ELTVLDLHPGAGKT-----RRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKG-----LPVRFHTNARM------ 66 (148)
T ss_dssp EEEEEE--TTSSTT-----TTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTT-----SSEEEESTTSS------
T ss_pred ceeEEecCCCCCCc-----ccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhc-----CCcccCceeee------
Confidence 35678889999999 6 688999998886 89999999999999999888743 23555433221
Q ss_pred HHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhcccc---C-CCe
Q 006311 521 EIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLAN---E-NTR 596 (651)
Q Consensus 521 ~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~---~-~~r 596 (651)
. ..-.+.-|-+.|..+.++....+.....||+||+||| +.+.|+++.....+.. . ..+
T Consensus 67 ---------~--------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEc-H~~Dp~sIA~rg~l~~~~~~g~~~ 128 (148)
T PF07652_consen 67 ---------R--------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDEC-HFTDPTSIAARGYLRELAESGEAK 128 (148)
T ss_dssp ---------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTT-T--SHHHHHHHHHHHHHHHTTS-E
T ss_pred ---------c--------cccCCCcccccccHHHHHHhcCcccccCccEEEEecc-ccCCHHHHhhheeHHHhhhccCee
Confidence 0 0113344556666666665555566678999999999 7899999876653321 2 236
Q ss_pred EEEE
Q 006311 597 VIVT 600 (651)
Q Consensus 597 vVLa 600 (651)
+|++
T Consensus 129 ~i~m 132 (148)
T PF07652_consen 129 VIFM 132 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 43
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.49 E-value=7e-07 Score=104.68 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|++|+..++...+...++++||+|+||| .+...++.+.+.. +.++|+.+||..-++++.+++.+.++
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT-----~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~fg 215 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKT-----EVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARFG 215 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHH-----HHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 4799999999999987322456999999999999 8888888887775 78999999999999999999987542
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQa 578 (651)
..+..+.+ ..+.. .++..+. .-.-.+.+|||+|.+... .+..++.+|||||+...
T Consensus 216 -~~v~~~~s------~~s~~-~r~~~~~--------~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~ 270 (679)
T PRK05580 216 -APVAVLHS------GLSDG-ERLDEWR--------KAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDS 270 (679)
T ss_pred -CCEEEEEC------CCCHH-HHHHHHH--------HHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCcc
Confidence 22222221 11111 0111110 001135789999986542 34457899999999644
No 44
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.49 E-value=1.1e-06 Score=99.65 Aligned_cols=125 Identities=13% Similarity=0.082 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC-
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI- 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l- 500 (651)
..|.+.|++||..++. ..-.+++.|.|+||| .+.+.++..++.. ...++||++||...+++..+++.+..
T Consensus 113 ~~~r~~Q~~av~~~l~---~~~~il~apTGsGKT-----~i~~~l~~~~~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK---NNRRLLNLPTSAGKS-----LIQYLLSRYYLEN-YEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred CCCCHHHHHHHHHHHh---cCceEEEeCCCCCHH-----HHHHHHHHHHHhc-CCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 4789999999999987 334699999999999 7665555444443 44599999999999999999987621
Q ss_pred -CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 501 -PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 501 -~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
+...+.-+ ..+ ... -....|+|+|..+........ ...|++||||||-++.
T Consensus 184 ~~~~~~~~i-------------------~~g-~~~------~~~~~I~VaT~qsl~~~~~~~--~~~~~~iIvDEaH~~~ 235 (501)
T PHA02558 184 FPREAMHKI-------------------YSG-TAK------DTDAPIVVSTWQSAVKQPKEW--FDQFGMVIVDECHLFT 235 (501)
T ss_pred ccccceeEE-------------------ecC-ccc------CCCCCEEEeeHHHHhhchhhh--ccccCEEEEEchhccc
Confidence 11000000 001 000 034689999987664322111 2469999999999988
Q ss_pred hHhH
Q 006311 580 EPET 583 (651)
Q Consensus 580 EpE~ 583 (651)
....
T Consensus 236 ~~~~ 239 (501)
T PHA02558 236 GKSL 239 (501)
T ss_pred chhH
Confidence 7653
No 45
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.37 E-value=1.9e-06 Score=105.64 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..|-+.|.+||..+... .+..-.||+.|.||||| .|.+.++..+++.....|||++++++.-+++..+.+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT-----~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKT-----RTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHH-----HHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc
Confidence 46889999999988753 23456899999999999 999999988888766789999999999999999887652
Q ss_pred -CCCc-chhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhh-h-----cCCCCCCccEEE
Q 006311 500 -IPAS-EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-N-----QGITAGHFSHIF 571 (651)
Q Consensus 500 -l~~~-~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~-~-----~~~~~~~F~~Ii 571 (651)
+... .+..+. .+ .. .. +.. .-...+|+++|.-+..... . ..+..++||+||
T Consensus 487 ~~~~~~~~~~i~-------~i----~~---L~-~~~------~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlII 545 (1123)
T PRK11448 487 KIEGDQTFASIY-------DI----KG---LE-DKF------PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCII 545 (1123)
T ss_pred ccccccchhhhh-------ch----hh---hh-hhc------ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEE
Confidence 1111 000000 00 00 00 000 0135789999998654322 1 114568999999
Q ss_pred EecCCCCC
Q 006311 572 LIDASSAT 579 (651)
Q Consensus 572 IDEAsQat 579 (651)
||||-+..
T Consensus 546 iDEaHRs~ 553 (1123)
T PRK11448 546 VDEAHRGY 553 (1123)
T ss_pred EECCCCCC
Confidence 99998863
No 46
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.37 E-value=2.4e-06 Score=94.60 Aligned_cols=131 Identities=13% Similarity=0.048 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-----CCCeEEEEccChhhHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-----PKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-----~~~rILVcApSNsAaD~l~~rL 496 (651)
..+++.|.+|+..++.+ .-+++.+|+||||| .+..-.+++.+... ...++||++||...|.++.+.+
T Consensus 22 ~~p~~iQ~~ai~~~~~g---~d~l~~apTGsGKT-----~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~ 93 (434)
T PRK11192 22 TRPTAIQAEAIPPALDG---RDVLGSAPTGTGKT-----AAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQA 93 (434)
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCChHH-----HHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHH
Confidence 46788999999999973 34899999999999 66555555544321 2468999999999999988876
Q ss_pred HhhCC--CcchhhhccccccccCCcHHHHHhhhccccccCCChhhh-hcccceEeeehhcchhhh-hcCCCCCCccEEEE
Q 006311 497 MKDIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEE-LRQYKVISSTFVSSFRLH-NQGITAGHFSHIFL 572 (651)
Q Consensus 497 ~~~l~--~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~-L~~~rIVvtT~ssa~~l~-~~~~~~~~F~~IiI 572 (651)
..... +.++.-+.. .+... ...+. ....+|+|+|......+. ...+....+++|||
T Consensus 94 ~~l~~~~~~~v~~~~g------g~~~~--------------~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 94 RELAKHTHLDIATITG------GVAYM--------------NHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLIL 153 (434)
T ss_pred HHHHccCCcEEEEEEC------CCCHH--------------HHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEE
Confidence 65211 111111110 00000 00111 135689999986544333 33445567899999
Q ss_pred ecCCCCCh
Q 006311 573 IDASSATE 580 (651)
Q Consensus 573 DEAsQatE 580 (651)
|||-.+.+
T Consensus 154 DEah~~l~ 161 (434)
T PRK11192 154 DEADRMLD 161 (434)
T ss_pred ECHHHHhC
Confidence 99986654
No 47
>PTZ00424 helicase 45; Provisional
Probab=98.35 E-value=4.2e-06 Score=91.22 Aligned_cols=133 Identities=12% Similarity=0.076 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|.+|+..++.+ .-.++.+|+||||| .+..-++++.+.. ..+.++|+.+|+..-|.++.+.+....
T Consensus 49 ~~~~~~Q~~ai~~i~~~---~d~ii~apTGsGKT-----~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 120 (401)
T PTZ00424 49 EKPSAIQQRGIKPILDG---YDTIGQAQSGTGKT-----ATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALG 120 (401)
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCChHH-----HHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHh
Confidence 46899999999999973 34689999999999 7666666665543 246689999999999888776665421
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhh-hcccceEeeehhcchhhh-hcCCCCCCccEEEEecCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEE-LRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~-L~~~rIVvtT~ssa~~l~-~~~~~~~~F~~IiIDEAsQa 578 (651)
... -++.... ..... .. ...+. ....+|+++|........ ...+....+++||||||-.+
T Consensus 121 ~~~-~~~~~~~---~g~~~--~~------------~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 121 DYL-KVRCHAC---VGGTV--VR------------DDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM 182 (401)
T ss_pred hhc-CceEEEE---ECCcC--HH------------HHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH
Confidence 100 0010000 00000 00 00011 134689999987654433 22344567899999999765
Q ss_pred Ch
Q 006311 579 TE 580 (651)
Q Consensus 579 tE 580 (651)
.+
T Consensus 183 ~~ 184 (401)
T PTZ00424 183 LS 184 (401)
T ss_pred Hh
Confidence 44
No 48
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=1.4e-05 Score=93.72 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=95.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh--
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD-- 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~-- 499 (651)
..|-+.|++|+...+...+..--+|.-|+|+||| .+.+.++..+ +.++||++||...+++-.+.+.+.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKT-----lvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKS-----LVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChH-----HHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 4688999999999885322345688999999999 7776665432 468999999999999999988762
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhh---------hcCCCCCCccEE
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH---------NQGITAGHFSHI 570 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~---------~~~~~~~~F~~I 570 (651)
++...+.++.+..+ .. ....+.|+|+|..+..... ...+....|++|
T Consensus 324 l~~~~I~~~tg~~k-----------------~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLI 379 (732)
T TIGR00603 324 IDDSQICRFTSDAK-----------------ER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLI 379 (732)
T ss_pred CCCceEEEEecCcc-----------------cc-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEE
Confidence 22222222211100 00 1134789999998764321 112445579999
Q ss_pred EEecCCCCChHhHHHHHhccccCCCeEEEEeCCC
Q 006311 571 FLIDASSATEPETMIVLGNLANENTRVIVTGAPH 604 (651)
Q Consensus 571 iIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~ 604 (651)
|+|||.++..+..--.+. ......++-|.|=|-
T Consensus 380 I~DEvH~lpA~~fr~il~-~l~a~~RLGLTATP~ 412 (732)
T TIGR00603 380 LLDEVHVVPAAMFRRVLT-IVQAHCKLGLTATLV 412 (732)
T ss_pred EEEccccccHHHHHHHHH-hcCcCcEEEEeecCc
Confidence 999998876554332233 223345777777664
No 49
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.30 E-value=4.7e-06 Score=99.42 Aligned_cols=143 Identities=12% Similarity=0.103 Sum_probs=88.4
Q ss_pred HHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhh
Q 006311 428 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFR 507 (651)
Q Consensus 428 Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~R 507 (651)
.+..+...+. .+.-++|+||+||||| +.+...+++... .+.+|+|+.|+..||..+++++.+.+...--..
T Consensus 6 ~~~~i~~~l~--~~~~vIi~a~TGSGKT-----T~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 6 VLPALRDALA--AHPQVVLEAPPGAGKS-----TAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHHH--cCCcEEEECCCCCCHH-----HHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 4455555554 3568999999999999 777776665443 356999999999999999999976432211112
Q ss_pred hccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC-CChHhHHHH
Q 006311 508 ANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS-ATEPETMIV 586 (651)
Q Consensus 508 v~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ-atEpE~LIp 586 (651)
++..-|.. .. .-.+.+|+++|....-+....+..-..+++||||||-. ..+.+.++.
T Consensus 77 VGy~vr~~---------------~~-------~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ 134 (819)
T TIGR01970 77 VGYRVRGE---------------NK-------VSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLA 134 (819)
T ss_pred EEEEEccc---------------cc-------cCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHH
Confidence 22221110 00 01345788888765544333333445799999999984 566554443
Q ss_pred Hh----ccccCCCeEEEEe
Q 006311 587 LG----NLANENTRVIVTG 601 (651)
Q Consensus 587 L~----~la~~~~rvVLaG 601 (651)
+. ....++.++|+..
T Consensus 135 ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 135 LALDVQSSLREDLKILAMS 153 (819)
T ss_pred HHHHHHHhcCCCceEEEEe
Confidence 32 1123445677664
No 50
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.30 E-value=1.8e-06 Score=93.43 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=40.2
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.++|.|.|||||| ..+..++.++.....+.++++.++.+.-.+.+.+.+..
T Consensus 3 v~~I~G~aGTGKT-----vla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKT-----VLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHH-----HHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 5799999999999 77777777763333577888888888888877777765
No 51
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.29 E-value=4.1e-06 Score=93.64 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHHHHhcc-CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 421 NYKLDSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~-~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
...|++.|++|+....+.. .....+|.-|+|+||| .+.++++..+.. ++||++|+...+++-.+++...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT-----~va~~~~~~~~~-----~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKT-----VVAAEAIAELKR-----STLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHH-----HHHHHHHHHhcC-----CEEEEECcHHHHHHHHHHHHHh
Confidence 4679999999999998741 1567799999999999 777776654332 3999999999999999888763
Q ss_pred CCCc-chhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhh-hhcCCCCCCccEEEEecCCC
Q 006311 500 IPAS-EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDASS 577 (651)
Q Consensus 500 l~~~-~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l-~~~~~~~~~F~~IiIDEAsQ 577 (651)
.... .+--++ +... +. ....|+++|..++.+. ....+...+|+.||+|||.+
T Consensus 104 ~~~~~~~g~~~--------------------~~~~-----~~-~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh 157 (442)
T COG1061 104 LLLNDEIGIYG--------------------GGEK-----EL-EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHH 157 (442)
T ss_pred cCCccccceec--------------------Ccee-----cc-CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcccc
Confidence 3211 111010 1111 11 1157999999988764 22234555899999999999
Q ss_pred CChHhHH
Q 006311 578 ATEPETM 584 (651)
Q Consensus 578 atEpE~L 584 (651)
+.-+..-
T Consensus 158 ~~a~~~~ 164 (442)
T COG1061 158 LPAPSYR 164 (442)
T ss_pred CCcHHHH
Confidence 8875543
No 52
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.29 E-value=5.2e-06 Score=99.08 Aligned_cols=145 Identities=10% Similarity=0.070 Sum_probs=87.0
Q ss_pred HHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhh
Q 006311 428 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFR 507 (651)
Q Consensus 428 Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~R 507 (651)
.+..+...+. .+.-++|+||+||||| +.+.-.+++-. ....+|+|+.|+..||-.+++++.+.+...--.+
T Consensus 9 ~~~~i~~~l~--~~~~vvv~A~TGSGKT-----t~~pl~lL~~~--~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 9 VLPELLTALK--TAPQVLLKAPTGAGKS-----TWLPLQLLQHG--GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHHHH--hCCCEEEEcCCCCCHH-----HHHHHHHHHcC--CcCCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 4455555554 2567899999999999 77665555422 2345999999999999999999876432221122
Q ss_pred hccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC-CChHhHHHH
Q 006311 508 ANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS-ATEPETMIV 586 (651)
Q Consensus 508 v~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ-atEpE~LIp 586 (651)
++...|.. ... -.+.+|+++|....-+....+..-..+++||||||-. ..+.+.++.
T Consensus 80 VGy~vr~~---------------~~~-------~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ 137 (812)
T PRK11664 80 VGYRMRAE---------------SKV-------GPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALA 137 (812)
T ss_pred EEEEecCc---------------ccc-------CCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHH
Confidence 33221110 000 0235788888765544443344446799999999976 444444433
Q ss_pred Hh----ccccCCCeEEEEeCC
Q 006311 587 LG----NLANENTRVIVTGAP 603 (651)
Q Consensus 587 L~----~la~~~~rvVLaGD~ 603 (651)
+. ....++-|+|+..-.
T Consensus 138 ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 138 LLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred HHHHHHHhCCccceEEEEecC
Confidence 32 111234567766543
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=98.28 E-value=6.3e-06 Score=96.57 Aligned_cols=148 Identities=13% Similarity=0.169 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|++|+..+++ ..-++|.+|.|+||| .....++++.+.. +.++++++|+.+-|+...+++.+ +.
T Consensus 21 ~~l~~~Q~~ai~~l~~---~~nvlv~apTGSGKT-----l~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~-l~ 89 (674)
T PRK01172 21 FELYDHQRMAIEQLRK---GENVIVSVPTAAGKT-----LIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSR-LR 89 (674)
T ss_pred CCCCHHHHHHHHHHhc---CCcEEEECCCCchHH-----HHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHH-Hh
Confidence 4689999999999766 446899999999999 5544555555554 67899999999999888887754 11
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-CCCCCccEEEEecCCCCCh
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDEAsQatE 580 (651)
.. -+++.... ++ +.. ..+.+.+++|+++|...+..+...+ .....+++||||||....+
T Consensus 90 ~~-g~~v~~~~-----------------G~-~~~-~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 90 SL-GMRVKISI-----------------GD-YDD-PPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred hc-CCeEEEEe-----------------CC-CCC-ChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccC
Confidence 10 01111100 00 000 1123467899999987554443221 1123589999999987653
Q ss_pred ------HhHHHHHhccccCCCeEEEE
Q 006311 581 ------PETMIVLGNLANENTRVIVT 600 (651)
Q Consensus 581 ------pE~LIpL~~la~~~~rvVLa 600 (651)
-|.++........+.|+|+.
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~l 175 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILAL 175 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 24443332222334566654
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.28 E-value=3.5e-06 Score=98.89 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHhcc---CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFE---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~---~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..|++.|++|+..|+... .+.-.||+||.||||| .+.+.++++.+.. +.++++.|||..-|.+..+++.+
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT-----~va~~~il~~~~~--g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKT-----VVAALAALAAIEA--GYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHH-----HHHHHHHHHHHHc--CCeEEEEeccHHHHHHHHHHHHH
Confidence 469999999999998742 1235799999999999 8777777776664 78999999999999999999876
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 576 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs 576 (651)
.+.... +++..-.. ..+..-+.. ..+.+ .+..|||+|..... ..+...++.+||||||-
T Consensus 333 l~~~~~-i~v~ll~G---~~~~~~r~~-----------~~~~l~~g~~~IvVgT~~ll~----~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 333 LLEPLG-IRVALLTG---SLKGKERRE-----------ILEAIASGEADIVIGTHALIQ----DDVEFHNLGLVIIDEQH 393 (681)
T ss_pred HHhhcC-cEEEEEcC---CCCHHHHHH-----------HHHHHhCCCCCEEEchHHHhc----ccchhcccceEEEechh
Confidence 433211 12211100 111000000 00111 35789999965432 22334578999999996
Q ss_pred CC
Q 006311 577 SA 578 (651)
Q Consensus 577 Qa 578 (651)
..
T Consensus 394 rf 395 (681)
T PRK10917 394 RF 395 (681)
T ss_pred hh
Confidence 54
No 55
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.27 E-value=4.3e-06 Score=93.42 Aligned_cols=134 Identities=10% Similarity=0.060 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++-|++|+..++.+ .-.++.+|.||||| .+..-.+++.+... ...++||++||...|+++.+.+....
T Consensus 25 ~~~t~iQ~~ai~~~l~g---~dvi~~a~TGsGKT-----~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 96 (460)
T PRK11776 25 TEMTPIQAQSLPAILAG---KDVIAQAKTGSGKT-----AAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLA 96 (460)
T ss_pred CCCCHHHHHHHHHHhcC---CCEEEECCCCCcHH-----HHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 46899999999999973 35899999999999 66655666655432 24589999999999999988775421
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh-cccceEeeehhcchhhhh-cCCCCCCccEEEEecCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L-~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAsQa 578 (651)
....-+++..... ..+... ..+.+ ...+|+|+|......+.. ..+....+++||||||-.+
T Consensus 97 ~~~~~~~v~~~~G---g~~~~~--------------~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 97 RFIPNIKVLTLCG---GVPMGP--------------QIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRM 159 (460)
T ss_pred hhCCCcEEEEEEC---CCChHH--------------HHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHH
Confidence 1100111111000 011000 00111 456899999875544332 2334456899999999765
Q ss_pred Ch
Q 006311 579 TE 580 (651)
Q Consensus 579 tE 580 (651)
.+
T Consensus 160 l~ 161 (460)
T PRK11776 160 LD 161 (460)
T ss_pred hC
Confidence 54
No 56
>PRK11054 helD DNA helicase IV; Provisional
Probab=98.27 E-value=9.4e-07 Score=103.50 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC--CCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~--~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..||++|++||... .++.+|.|.|||||| +|+++.+..++... .+.+||+.|+||.||+.+.+|+...
T Consensus 195 ~~L~~~Q~~av~~~-----~~~~lV~agaGSGKT-----~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVVNG-----EDSLLVLAGAGSGKT-----SVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHhCC-----CCCeEEEEeCCCCHH-----HHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 57999999999741 457899999999999 99999998888653 4569999999999999999999875
Q ss_pred CC
Q 006311 500 IP 501 (651)
Q Consensus 500 l~ 501 (651)
+.
T Consensus 265 lg 266 (684)
T PRK11054 265 LG 266 (684)
T ss_pred cC
Confidence 43
No 57
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.26 E-value=3.9e-06 Score=98.22 Aligned_cols=127 Identities=18% Similarity=0.238 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..||.+|+.|+..|.+. .+..++|++|.+|+||| -+..++|.+.++. ++.+|+..|.-+-...+.+|+...+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKT-----EvYl~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKT-----EVYLEAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHH-----HHHHHHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHh
Confidence 58999999999999875 34689999999999999 9999999999997 8999999999999999999998755
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 577 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ 577 (651)
. .++.=+++ .+.+. .+|..|. +-.-.+++||++|.++..- |..+.-.|||||=..
T Consensus 270 g-~~v~vlHS------~Ls~~-er~~~W~--------~~~~G~~~vVIGtRSAlF~------Pf~~LGLIIvDEEHD 324 (730)
T COG1198 270 G-AKVAVLHS------GLSPG-ERYRVWR--------RARRGEARVVIGTRSALFL------PFKNLGLIIVDEEHD 324 (730)
T ss_pred C-CChhhhcc------cCChH-HHHHHHH--------HHhcCCceEEEEechhhcC------chhhccEEEEecccc
Confidence 4 33322222 12111 2232221 1122789999999998754 334456899999543
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.26 E-value=3.5e-06 Score=98.13 Aligned_cols=130 Identities=14% Similarity=0.141 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHHhcc-CC--CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFE-GQ--SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~-~~--~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..|++.|++|+..|+... .. .-.+|+||.||||| .+...++++.+.. +.++++++||..-|.+..+.+.+
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT-----~va~l~il~~~~~--g~qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKT-----LVAALAMLAAIEA--GYQVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHH-----HHHHHHHHHHHHc--CCcEEEECCHHHHHHHHHHHHHH
Confidence 379999999999999742 22 23699999999999 7776677776664 78999999999999999988876
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 576 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs 576 (651)
.+.... +++.... .+++..-+. . ..+.+ .+.+||++|..... ..+....+.+||||||-
T Consensus 307 l~~~~g-i~v~llt---g~~~~~~r~-~----------~~~~i~~g~~~IiVgT~~ll~----~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 307 LLAPLG-IEVALLT---GSLKGKRRK-E----------LLETIASGQIHLVVGTHALIQ----EKVEFKRLALVIIDEQH 367 (630)
T ss_pred HhcccC-cEEEEEe---cCCCHHHHH-H----------HHHHHhCCCCCEEEecHHHHh----ccccccccceEEEechh
Confidence 433211 1111100 011111000 0 01111 35689999976432 23444578999999996
Q ss_pred C
Q 006311 577 S 577 (651)
Q Consensus 577 Q 577 (651)
.
T Consensus 368 ~ 368 (630)
T TIGR00643 368 R 368 (630)
T ss_pred h
Confidence 5
No 59
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.22 E-value=6.1e-06 Score=96.05 Aligned_cols=132 Identities=11% Similarity=0.042 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhh-
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKD- 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~- 499 (651)
..+++.|.+|+..++. ..-+++++|+||||| .+.+-.+++.+.. ....++||.+||..-|.++.+.+...
T Consensus 27 ~~ptpiQ~~ai~~ll~---g~dvl~~ApTGsGKT-----~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~ 98 (629)
T PRK11634 27 EKPSPIQAECIPHLLN---GRDVLGMAQTGSGKT-----AAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFS 98 (629)
T ss_pred CCCCHHHHHHHHHHHc---CCCEEEEcCCCCcHH-----HHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHH
Confidence 4678999999999987 345899999999999 6655555544432 23568999999999999998776542
Q ss_pred --CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEEEecCC
Q 006311 500 --IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDAS 576 (651)
Q Consensus 500 --l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAs 576 (651)
+.+..++-++.... ....+ ...-..+.|||+|......... ..+...++.+||||||-
T Consensus 99 ~~~~~i~v~~~~gG~~----~~~q~---------------~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 99 KHMRGVNVVALYGGQR----YDVQL---------------RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred hhcCCceEEEEECCcC----HHHHH---------------HHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 22222222211100 00000 0111457899999876644332 23445568899999997
Q ss_pred CCCh
Q 006311 577 SATE 580 (651)
Q Consensus 577 QatE 580 (651)
.+..
T Consensus 160 ~ml~ 163 (629)
T PRK11634 160 EMLR 163 (629)
T ss_pred HHhh
Confidence 6654
No 60
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.21 E-value=7.6e-06 Score=98.74 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHhc-c--CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSF-E--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~-~--~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..+++.|.+|+..|+.. . .+.-.+|+||.|+||| .+...++++.+.. +.++++++||..-|.+..+.+.+
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT-----~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~f~~ 522 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKT-----EVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFETFKE 522 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHH-----HHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHHHHH
Confidence 36899999999999974 1 2235799999999999 7777777766664 68999999999999999998876
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 576 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs 576 (651)
.+... .+++..-++. .+..-.. . . .+.+ .+.+|||+|... ....+...++.+||||||.
T Consensus 523 ~~~~~-~i~v~~Lsg~---~~~~e~~-~-----~-----~~~l~~g~~dIVIGTp~l----l~~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 523 RFANF-PVTIELLSRF---RSAKEQN-E-----I-----LKELASGKIDILIGTHKL----LQKDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred HhccC-CcEEEEEecc---ccHHHHH-H-----H-----HHHHHcCCceEEEchHHH----hhCCCCcccCCEEEeeccc
Confidence 44322 1222221111 1100000 0 0 0111 247899999743 2334555678999999986
Q ss_pred C
Q 006311 577 S 577 (651)
Q Consensus 577 Q 577 (651)
.
T Consensus 584 r 584 (926)
T TIGR00580 584 R 584 (926)
T ss_pred c
Confidence 5
No 61
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.18 E-value=9.9e-06 Score=90.65 Aligned_cols=134 Identities=13% Similarity=0.020 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-------CCCeEEEEccChhhHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-------PKSRILICAPWNRTCDKLME 494 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-------~~~rILVcApSNsAaD~l~~ 494 (651)
..+++-|++|+..++.. .-.++.+|.||||| .+..-.+++.+... ...++||++||...|.++.+
T Consensus 22 ~~pt~iQ~~ai~~il~g---~dvlv~apTGsGKT-----la~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 93 (456)
T PRK10590 22 REPTPIQQQAIPAVLEG---RDLMASAQTGTGKT-----AGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGE 93 (456)
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCCcHH-----HHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHH
Confidence 46899999999999973 34899999999999 66555555554321 12479999999999999988
Q ss_pred HHHhhCCCc--chhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEE
Q 006311 495 CLMKDIPAS--EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIF 571 (651)
Q Consensus 495 rL~~~l~~~--~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~Ii 571 (651)
.+....... ..+.+. ...+.+-. ....-...+|+|+|......+.. ..+....+++||
T Consensus 94 ~~~~~~~~~~~~~~~~~------gg~~~~~~-------------~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lV 154 (456)
T PRK10590 94 NVRDYSKYLNIRSLVVF------GGVSINPQ-------------MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILV 154 (456)
T ss_pred HHHHHhccCCCEEEEEE------CCcCHHHH-------------HHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEE
Confidence 876522111 111110 01110000 00112456899999875544332 223445689999
Q ss_pred EecCCCCChHh
Q 006311 572 LIDASSATEPE 582 (651)
Q Consensus 572 IDEAsQatEpE 582 (651)
||||-.+.+..
T Consensus 155 iDEah~ll~~~ 165 (456)
T PRK10590 155 LDEADRMLDMG 165 (456)
T ss_pred eecHHHHhccc
Confidence 99998766543
No 62
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.16 E-value=8.2e-06 Score=90.22 Aligned_cols=134 Identities=13% Similarity=0.037 Sum_probs=83.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC--------CCCeEEEEccChhhHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--------PKSRILICAPWNRTCDKLM 493 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~--------~~~rILVcApSNsAaD~l~ 493 (651)
..+++-|++|+..++++ .-.++++|.||||| .+.+-.+++.+... .+.++||.+||...|.++.
T Consensus 29 ~~pt~iQ~~aip~il~g---~dvi~~ApTGsGKT-----la~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~ 100 (423)
T PRK04837 29 HNCTPIQALALPLTLAG---RDVAGQAQTGTGKT-----MAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIH 100 (423)
T ss_pred CCCCHHHHHHHHHHhCC---CcEEEECCCCchHH-----HHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHH
Confidence 46789999999999983 45899999999999 66555555444321 2358999999999999987
Q ss_pred HHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh-cccceEeeehhcchhhhh-cCCCCCCccEEE
Q 006311 494 ECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLHN-QGITAGHFSHIF 571 (651)
Q Consensus 494 ~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L-~~~rIVvtT~ssa~~l~~-~~~~~~~F~~Ii 571 (651)
+.+....... -+++..... ....+. ..+.+ ...+|+|+|......+.. ..+....+.++|
T Consensus 101 ~~~~~l~~~~-~~~v~~~~g---g~~~~~--------------~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lV 162 (423)
T PRK04837 101 ADAEPLAQAT-GLKLGLAYG---GDGYDK--------------QLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVV 162 (423)
T ss_pred HHHHHHhccC-CceEEEEEC---CCCHHH--------------HHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEE
Confidence 7655411111 012111100 000000 00111 346899999876654432 234556789999
Q ss_pred EecCCCCChH
Q 006311 572 LIDASSATEP 581 (651)
Q Consensus 572 IDEAsQatEp 581 (651)
||||-.+.+.
T Consensus 163 iDEad~l~~~ 172 (423)
T PRK04837 163 LDEADRMFDL 172 (423)
T ss_pred EecHHHHhhc
Confidence 9999776553
No 63
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.14 E-value=6.2e-06 Score=86.96 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=35.0
Q ss_pred CCCCCccEEEEecCCCCChHhHHHHHhcccc---CCCeEEEE-eCCCCCCccccCh
Q 006311 562 ITAGHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVT-GAPHNSPSRVRSD 613 (651)
Q Consensus 562 ~~~~~F~~IiIDEAsQatEpE~LIpL~~la~---~~~rvVLa-GD~~QL~PvV~S~ 613 (651)
-+...|.+||+||| +.+-.++.-+|.+.-. ..++++|+ -+.--+++.+.|.
T Consensus 125 ~~~~~fKiiIlDEc-dsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 125 YPCPPFKIIILDEC-DSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred CCCCcceEEEEech-hhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 34456999999999 5566778888875543 46788876 4555666666554
No 64
>PRK02362 ski2-like helicase; Provisional
Probab=98.11 E-value=2e-05 Score=93.39 Aligned_cols=129 Identities=14% Similarity=0.069 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|.+|+...+.. ..-+++..|.|+||| ....-++++.+. ++.++++++|+.+-|++..+++.. +.
T Consensus 22 ~~l~p~Q~~ai~~~~~~--g~nvlv~APTGSGKT-----lia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~-~~ 91 (737)
T PRK02362 22 EELYPPQAEAVEAGLLD--GKNLLAAIPTASGKT-----LIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFER-FE 91 (737)
T ss_pred CcCCHHHHHHHHHHHhC--CCcEEEECCCcchHH-----HHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHH-hh
Confidence 47999999999884432 346899999999999 554445555554 478999999999999999888864 21
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCC-CCCCccEEEEecCCCCCh
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGI-TAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~-~~~~F~~IiIDEAsQatE 580 (651)
.. -+|++... ++ +. ...+.+.++.|+|+|......+...+. ....+++||||||-...+
T Consensus 92 ~~-g~~v~~~t-----------------Gd-~~-~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d 151 (737)
T PRK02362 92 EL-GVRVGIST-----------------GD-YD-SRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDS 151 (737)
T ss_pred cC-CCEEEEEe-----------------CC-cC-ccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCC
Confidence 10 01221110 00 00 011234667899999875544433211 123589999999987654
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.05 E-value=5.4e-05 Score=68.28 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCD 490 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD 490 (651)
++.+..++...+........+|+|||||||| +++..+...+. ..+..+..+..+..+.+
T Consensus 3 ~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT------~l~~~i~~~~~-~~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 3 QEEAIEALREALELPPPKNLLLYGPPGTGKT------TLARAIANELF-RPGAPFLYLNASDLLEG 61 (151)
T ss_pred hHHHHHHHHHHHhCCCCCeEEEECCCCCCHH------HHHHHHHHHhh-cCCCCeEEEehhhhhhh
Confidence 4456666666655334568999999999999 55555544443 23567777766554443
No 66
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.04 E-value=2.4e-05 Score=96.49 Aligned_cols=130 Identities=11% Similarity=0.085 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHHhc-c--CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSF-E--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~-~--~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..+++.|.+|+..++.. . .+.-.|++||.|+||| .+...++...+. .+.+++|++||..-|.++.+.+.+
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT-----~val~aa~~~~~--~g~qvlvLvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT-----EVAMRAAFLAVE--NHKQVAVLVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHH-----HHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 47899999999999974 1 2346899999999999 776666655554 378999999999999999988876
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 576 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs 576 (651)
.+... .+++....+.. +..+.... .+.+ ...+|||+|.... ...+...++.++|||||-
T Consensus 672 ~~~~~-~v~i~~l~g~~-s~~e~~~i-------------l~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 672 RFANW-PVRIEMLSRFR-SAKEQTQI-------------LAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEH 732 (1147)
T ss_pred hhccC-CceEEEEECCC-CHHHHHHH-------------HHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechh
Confidence 43321 12222211110 00000000 0111 3568999998532 233455679999999985
Q ss_pred C
Q 006311 577 S 577 (651)
Q Consensus 577 Q 577 (651)
.
T Consensus 733 r 733 (1147)
T PRK10689 733 R 733 (1147)
T ss_pred h
Confidence 4
No 67
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.03 E-value=5.6e-05 Score=88.76 Aligned_cols=151 Identities=12% Similarity=-0.002 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHhc--c-----CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 424 LDSDSNSAVHQILSF--E-----GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~--~-----~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
....|..||..++.. . +..-.+|+-|.||||| .|++.++..+++.....+||++++...-.+++.+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT-----~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKT-----LTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCcc-----HHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHH
Confidence 467799999998754 1 2346899999999999 999999988887667789999999999999999988
Q ss_pred HhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhh---cCCCCCCcc-EE
Q 006311 497 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHN---QGITAGHFS-HI 570 (651)
Q Consensus 497 ~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~---~~~~~~~F~-~I 570 (651)
..... ..+.++.+. ..+.. .+ ...+|+++|..+...... ..++..+++ +|
T Consensus 314 ~~~~~-~~~~~~~s~--------~~L~~---------------~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lv 369 (667)
T TIGR00348 314 QSLQK-DCAERIESI--------AELKR---------------LLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVV 369 (667)
T ss_pred HhhCC-CCCcccCCH--------HHHHH---------------HHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEE
Confidence 76321 111111110 11110 11 236799999887764221 122222333 89
Q ss_pred EEecCCCCChHhHHHHHhccccCCCeEEEEeCC
Q 006311 571 FLIDASSATEPETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 571 iIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~ 603 (651)
|||||.+.......--+.........+-|.|=|
T Consensus 370 IvDEaHrs~~~~~~~~l~~~~p~a~~lGfTaTP 402 (667)
T TIGR00348 370 IFDEAHRSQYGELAKNLKKALKNASFFGFTGTP 402 (667)
T ss_pred EEEcCccccchHHHHHHHhhCCCCcEEEEeCCC
Confidence 999998776655333332122222355555544
No 68
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.99 E-value=1.1e-05 Score=83.57 Aligned_cols=156 Identities=14% Similarity=0.157 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcc----------CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCC---eEEEEccChhhHHHHH
Q 006311 427 DSNSAVHQILSFE----------GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS---RILICAPWNRTCDKLM 493 (651)
Q Consensus 427 ~Q~~AV~~iL~~~----------~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~---rILVcApSNsAaD~l~ 493 (651)
.|.+||..++... ...-.+|.-.+|+||| .+.+.++..+....+.. ++||++|+ +..+.-.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT-----~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~ 74 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKT-----ITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWK 74 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHH-----HHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCch-----hhhhhhhhhhhhccccccccceeEeecc-chhhhhh
Confidence 4899999887643 3445677779999999 88888777666653333 59999999 6677777
Q ss_pred HHHHhhCCC--cchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcch-----hhhhcCCCCCC
Q 006311 494 ECLMKDIPA--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSF-----RLHNQGITAGH 566 (651)
Q Consensus 494 ~rL~~~l~~--~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~-----~l~~~~~~~~~ 566 (651)
..+.+...+ .+++.+.... . .... .......+.|+++|..+.. ... ..+...+
T Consensus 75 ~E~~~~~~~~~~~v~~~~~~~-------~----------~~~~--~~~~~~~~~vvi~ty~~~~~~~~~~~~-~~l~~~~ 134 (299)
T PF00176_consen 75 EEIEKWFDPDSLRVIIYDGDS-------E----------RRRL--SKNQLPKYDVVITTYETLRKARKKKDK-EDLKQIK 134 (299)
T ss_dssp HHHHHHSGT-TS-EEEESSSC-------H----------HHHT--TSSSCCCSSEEEEEHHHHH--TSTHTT-HHHHTSE
T ss_pred hhhcccccccccccccccccc-------c----------cccc--cccccccceeeeccccccccccccccc-ccccccc
Confidence 777764422 1222111110 0 0000 1123467889999998776 111 1123346
Q ss_pred ccEEEEecCCCCChHh--HHHHHhccccCCCeEEEEeCCCCCCcc
Q 006311 567 FSHIFLIDASSATEPE--TMIVLGNLANENTRVIVTGAPHNSPSR 609 (651)
Q Consensus 567 F~~IiIDEAsQatEpE--~LIpL~~la~~~~rvVLaGD~~QL~Pv 609 (651)
|+.||||||..+.... ..-.+..+ ....+++|.|-|.+-.+.
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~l-~~~~~~lLSgTP~~n~~~ 178 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRKL-RARYRWLLSGTPIQNSLE 178 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHCC-CECEEEEE-SS-SSSGSH
T ss_pred ceeEEEeccccccccccccccccccc-ccceEEeecccccccccc
Confidence 9999999998774332 23333322 245689999999887653
No 69
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.98 E-value=2.6e-05 Score=90.00 Aligned_cols=134 Identities=15% Similarity=0.004 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC--------CCCeEEEEccChhhHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--------PKSRILICAPWNRTCDKLM 493 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~--------~~~rILVcApSNsAaD~l~ 493 (651)
..+++-|.+++..++.+ .=+++++|.||||| .+..-.+++.+... ...++||++||...|.++.
T Consensus 30 ~~ptpiQ~~~ip~~l~G---~Dvi~~ApTGSGKT-----lafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~ 101 (572)
T PRK04537 30 TRCTPIQALTLPVALPG---GDVAGQAQTGTGKT-----LAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIH 101 (572)
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEEcCCCCcHH-----HHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHH
Confidence 46799999999999973 35899999999999 66655555544221 1368999999999999998
Q ss_pred HHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh-cccceEeeehhcchhhhhc--CCCCCCccEE
Q 006311 494 ECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLHNQ--GITAGHFSHI 570 (651)
Q Consensus 494 ~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L-~~~rIVvtT~ssa~~l~~~--~~~~~~F~~I 570 (651)
+.+........ +++.... ...+.+. ..+.+ ...+|||+|......+... .+....+++|
T Consensus 102 ~~~~~l~~~~~-i~v~~l~---Gg~~~~~--------------q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 102 KDAVKFGADLG-LRFALVY---GGVDYDK--------------QRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred HHHHHHhccCC-ceEEEEE---CCCCHHH--------------HHHHHhCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 88765221111 1111110 0111000 01112 3468999998755433321 1333457899
Q ss_pred EEecCCCCChH
Q 006311 571 FLIDASSATEP 581 (651)
Q Consensus 571 iIDEAsQatEp 581 (651)
|||||-.+.+.
T Consensus 164 ViDEAh~lld~ 174 (572)
T PRK04537 164 VLDEADRMFDL 174 (572)
T ss_pred EecCHHHHhhc
Confidence 99999876654
No 70
>PRK13766 Hef nuclease; Provisional
Probab=97.95 E-value=5.7e-05 Score=89.81 Aligned_cols=132 Identities=17% Similarity=0.056 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC-
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP- 501 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~- 501 (651)
..-+.|++++..++.. -.+|..|.|+||| .+.+.++...+. .++.++|+.+||..-+++..+.+...+.
T Consensus 15 ~~r~yQ~~~~~~~l~~----n~lv~~ptG~GKT-----~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 15 EARLYQQLLAATALKK----NTLVVLPTGLGKT-----AIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CccHHHHHHHHHHhcC----CeEEEcCCCccHH-----HHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 4567899999988872 5799999999999 655555555554 4688999999999999888888776322
Q ss_pred -CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchh-hhhcCCCCCCccEEEEecCCCCC
Q 006311 502 -ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 -~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~-l~~~~~~~~~F~~IiIDEAsQat 579 (651)
+..+..+.+. .+..- ..+...+++|+++|...... +....++...|++||||||.++.
T Consensus 85 ~~~~v~~~~g~------~~~~~--------------r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~ 144 (773)
T PRK13766 85 PEEKIVVFTGE------VSPEK--------------RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAV 144 (773)
T ss_pred CCceEEEEeCC------CCHHH--------------HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccc
Confidence 1122212111 11110 01223467899999875533 22334556679999999999887
Q ss_pred hHhHH
Q 006311 580 EPETM 584 (651)
Q Consensus 580 EpE~L 584 (651)
.....
T Consensus 145 ~~~~~ 149 (773)
T PRK13766 145 GNYAY 149 (773)
T ss_pred ccccH
Confidence 65433
No 71
>PTZ00110 helicase; Provisional
Probab=97.95 E-value=3.7e-05 Score=88.20 Aligned_cols=135 Identities=13% Similarity=0.023 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHH-HHHHHHHHHh-----CCCCeEEEEccChhhHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVV-REAVLQIRRR-----SPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~Tl-veaI~qll~~-----~~~~rILVcApSNsAaD~l~~r 495 (651)
..+++-|.+|+..++. ..-+++.+|.||||| .+. .-++..+... ..+.++||++||..-|.++.+.
T Consensus 151 ~~pt~iQ~~aip~~l~---G~dvI~~ApTGSGKT-----laylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~ 222 (545)
T PTZ00110 151 TEPTPIQVQGWPIALS---GRDMIGIAETGSGKT-----LAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQ 222 (545)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEeCCCChHH-----HHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHH
Confidence 4689999999999997 346789999999999 543 2333333332 1246799999999999988887
Q ss_pred HHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-CCCCCccEEEEec
Q 006311 496 LMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLID 574 (651)
Q Consensus 496 L~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDE 574 (651)
+.+..... -+|.... ....+..-. ........+|+|+|......+...+ .....+++|||||
T Consensus 223 ~~~~~~~~-~i~~~~~---~gg~~~~~q-------------~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDE 285 (545)
T PTZ00110 223 CNKFGASS-KIRNTVA---YGGVPKRGQ-------------IYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDE 285 (545)
T ss_pred HHHHhccc-CccEEEE---eCCCCHHHH-------------HHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeeh
Confidence 76521111 1111100 001111000 0112245789999987554433222 2334689999999
Q ss_pred CCCCChH
Q 006311 575 ASSATEP 581 (651)
Q Consensus 575 AsQatEp 581 (651)
|-.+.+.
T Consensus 286 Ad~mld~ 292 (545)
T PTZ00110 286 ADRMLDM 292 (545)
T ss_pred HHhhhhc
Confidence 9876643
No 72
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.95 E-value=2.9e-05 Score=87.33 Aligned_cols=133 Identities=11% Similarity=0.059 Sum_probs=81.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC--------CCeEEEEccChhhHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP--------KSRILICAPWNRTCDKLM 493 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~--------~~rILVcApSNsAaD~l~ 493 (651)
..+++-|.+|+..++.+ .-+++.+|.||||| ....-.+++.+...+ ..++|+.+||..-|.++.
T Consensus 108 ~~~~~iQ~~ai~~~~~G---~dvi~~apTGSGKT-----lay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~ 179 (475)
T PRK01297 108 PYCTPIQAQVLGYTLAG---HDAIGRAQTGTGKT-----AAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIA 179 (475)
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCChHH-----HHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHH
Confidence 46899999999999873 35789999999999 554443443333222 468999999999999988
Q ss_pred HHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhc-CCCCCCccEE
Q 006311 494 ECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQ-GITAGHFSHI 570 (651)
Q Consensus 494 ~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~-~~~~~~F~~I 570 (651)
+.+........ +++... ..+.+.+. ..+.+ ...+|+|+|......+... .+....+++|
T Consensus 180 ~~~~~l~~~~~-~~v~~~---~gg~~~~~--------------~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~l 241 (475)
T PRK01297 180 KDAAALTKYTG-LNVMTF---VGGMDFDK--------------QLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVM 241 (475)
T ss_pred HHHHHhhccCC-CEEEEE---EccCChHH--------------HHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceE
Confidence 87765211110 111110 00000000 00111 3568999998766443332 2233468899
Q ss_pred EEecCCCCCh
Q 006311 571 FLIDASSATE 580 (651)
Q Consensus 571 iIDEAsQatE 580 (651)
|||||-...+
T Consensus 242 ViDEah~l~~ 251 (475)
T PRK01297 242 VLDEADRMLD 251 (475)
T ss_pred EechHHHHHh
Confidence 9999977654
No 73
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=97.94 E-value=2.7e-05 Score=91.61 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=93.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..++++|++|+..++. ....+|.|+|||||| .++ ..+..++.. -+..++++|++..|+-.+.+.- ...
T Consensus 318 ~~~~~~q~~a~~vl~~---de~smlt~~~~~~~~-----~~~-~~~~~l~~~-~~~~~l~aa~tG~a~~~l~e~t--g~~ 385 (696)
T COG0507 318 LRLSLEQKEALDVLVV---DEVSMLTGGPGTGKT-----TAI-KAIARLIKE-GDGDQLLAAPTGKAAKRLNEST--GLE 385 (696)
T ss_pred CCcCcccHHHHHHHhc---CCeeEEeccCCcchH-----HHH-HHHHHHHHh-cCCcEEeechhhHHHHHHHHhh--Ccc
Confidence 4789999999999987 678899999999999 444 445555554 2455999999999998777664 112
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp 581 (651)
...+-|...... ... ........|.+||||+++...
T Consensus 386 a~ti~~~~~~~~-----------------~~~--------------------------~~~~~~~~d~~iiDe~~ml~~- 421 (696)
T COG0507 386 ARTIHRLLGLWE-----------------KTG--------------------------NNEEPLDGDLLIIDEASMLDT- 421 (696)
T ss_pred hhHHHHHHhccc-----------------cCC--------------------------CCCCccccceeEEehhhhHHH-
Confidence 222222211100 000 001233578999999999887
Q ss_pred hHHHHHhccccCCCeEEEEeCCCCCCccccChH
Q 006311 582 ETMIVLGNLANENTRVIVTGAPHNSPSRVRSDI 614 (651)
Q Consensus 582 E~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~ 614 (651)
....-+........++|++||+.||+++.....
T Consensus 422 ~~~~~l~~~i~~~a~~i~vGD~~ql~~v~~g~~ 454 (696)
T COG0507 422 SLAFGLLSAIGKLAKVILVGDVDQLPSVGAGAV 454 (696)
T ss_pred HHhhhhhcccccCCeEEEeCCHHhcCCCCCCch
Confidence 333333224456789999999999999987763
No 74
>PRK09401 reverse gyrase; Reviewed
Probab=97.90 E-value=4.7e-05 Score=94.08 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 502 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~ 502 (651)
.+.+.|+.++..++. ..-+++.+|.||||| ..+.-++.. +.. .+.++||++||..-|+++.+++......
T Consensus 80 ~pt~iQ~~~i~~il~---g~dv~i~ApTGsGKT-----~f~l~~~~~-l~~-~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 80 KPWSLQRTWAKRLLL---GESFAIIAPTGVGKT-----TFGLVMSLY-LAK-KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred CCcHHHHHHHHHHHC---CCcEEEEcCCCCCHH-----HHHHHHHHH-HHh-cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 578899999999997 457799999999999 544333333 332 4789999999999999999998863211
Q ss_pred cchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCCh
Q 006311 503 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 503 ~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatE 580 (651)
.. +++....- -..++..-.. ...+.+ ...+|+|+|......... .+....|+++|||||-.+..
T Consensus 150 ~~-~~~~~~~g-~~~~~~~ek~-----------~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 150 VG-CGVKILYY-HSSLKKKEKE-----------EFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred cC-ceEEEEEc-cCCcchhHHH-----------HHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHHhhh
Confidence 11 11100000 0001000000 001112 247899999875554333 35555699999999976653
No 75
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.90 E-value=2.6e-05 Score=88.70 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=71.1
Q ss_pred EEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHHHH
Q 006311 445 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQ 524 (651)
Q Consensus 445 LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~ 524 (651)
||+||.|+||| .+...++.+++.. +.++|+.+|+.+-+.++.+++.+.+. .++..+.+ .+++. .+
T Consensus 1 LL~g~TGsGKT-----~v~l~~i~~~l~~--g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs------~~~~~-er 65 (505)
T TIGR00595 1 LLFGVTGSGKT-----EVYLQAIEKVLAL--GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHS------GLSDS-EK 65 (505)
T ss_pred CccCCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEEC------CCCHH-HH
Confidence 68999999999 8888888777765 78999999999999999999987543 22222221 12111 11
Q ss_pred hhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 525 VSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 525 y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
+..+.. -.-.+++|||+|.++.. .+..++++|||||+....
T Consensus 66 ~~~~~~--------~~~g~~~IVVGTrsalf------~p~~~l~lIIVDEeh~~s 106 (505)
T TIGR00595 66 LQAWRK--------VKNGEILVVIGTRSALF------LPFKNLGLIIVDEEHDSS 106 (505)
T ss_pred HHHHHH--------HHcCCCCEEECChHHHc------CcccCCCEEEEECCCccc
Confidence 111110 01145789999987553 244578999999986543
No 76
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.89 E-value=5.6e-05 Score=80.68 Aligned_cols=122 Identities=12% Similarity=0.170 Sum_probs=90.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHH
Q 006311 415 SLCPYSNYKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLM 493 (651)
Q Consensus 415 ~~~~~~~~~LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~ 493 (651)
....|. .+|++.|+.|-...+.. ......|||.-.|+||| -.+-++|.+.+.+ +.+|.+.+|--.-+-++.
T Consensus 90 s~L~W~-G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKT-----EMif~~i~~al~~--G~~vciASPRvDVclEl~ 161 (441)
T COG4098 90 SVLQWK-GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKT-----EMIFQGIEQALNQ--GGRVCIASPRVDVCLELY 161 (441)
T ss_pred ceeeec-cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCch-----hhhHHHHHHHHhc--CCeEEEecCcccchHHHH
Confidence 345675 59999999998887764 34678999999999999 8888888888876 999999999988888888
Q ss_pred HHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEe
Q 006311 494 ECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLI 573 (651)
Q Consensus 494 ~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiID 573 (651)
.||.+.+.+.+|.=++..+ ... -++.+||+|.--.-++. .+||.+|||
T Consensus 162 ~Rlk~aF~~~~I~~Lyg~S-----------------~~~---------fr~plvVaTtHQLlrFk------~aFD~liID 209 (441)
T COG4098 162 PRLKQAFSNCDIDLLYGDS-----------------DSY---------FRAPLVVATTHQLLRFK------QAFDLLIID 209 (441)
T ss_pred HHHHHhhccCCeeeEecCC-----------------chh---------ccccEEEEehHHHHHHH------hhccEEEEe
Confidence 8988766554443332211 111 22667888877665544 269999999
Q ss_pred cCC
Q 006311 574 DAS 576 (651)
Q Consensus 574 EAs 576 (651)
|.-
T Consensus 210 EVD 212 (441)
T COG4098 210 EVD 212 (441)
T ss_pred ccc
Confidence 973
No 77
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.87 E-value=6e-05 Score=85.92 Aligned_cols=134 Identities=11% Similarity=0.060 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHH-HHHHHHH-------hCCCCeEEEEccChhhHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVRE-AVLQIRR-------RSPKSRILICAPWNRTCDKLM 493 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~Tlve-aI~qll~-------~~~~~rILVcApSNsAaD~l~ 493 (651)
..+++-|.+|+..++. ..-+++.+|.||||| ....- ++.++.. ...+.++||.+||..-|.++.
T Consensus 142 ~~ptpiQ~~aip~il~---g~dviv~ApTGSGKT-----layllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~ 213 (518)
T PLN00206 142 EFPTPIQMQAIPAALS---GRSLLVSADTGSGKT-----ASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVE 213 (518)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEecCCCCcc-----HHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHH
Confidence 4789999999999997 346899999999999 44322 2322222 113568999999999988876
Q ss_pred HHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhh-hcCCCCCCccEEEE
Q 006311 494 ECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFL 572 (651)
Q Consensus 494 ~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~-~~~~~~~~F~~IiI 572 (651)
+.+........ ++.....- -+.....+ ...-....|||+|......+. ...+.....++|||
T Consensus 214 ~~~~~l~~~~~-~~~~~~~g-G~~~~~q~---------------~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lVi 276 (518)
T PLN00206 214 DQAKVLGKGLP-FKTALVVG-GDAMPQQL---------------YRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVL 276 (518)
T ss_pred HHHHHHhCCCC-ceEEEEEC-CcchHHHH---------------HHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEe
Confidence 65543111111 11100000 00001000 011135689999987554333 22344456889999
Q ss_pred ecCCCCCh
Q 006311 573 IDASSATE 580 (651)
Q Consensus 573 DEAsQatE 580 (651)
|||-.+.+
T Consensus 277 DEad~ml~ 284 (518)
T PLN00206 277 DEVDCMLE 284 (518)
T ss_pred ecHHHHhh
Confidence 99977654
No 78
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.85 E-value=4.1e-05 Score=82.38 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=43.1
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
++|.||.|+||| .+...+++..+......++++++|+.+.++.+.+++...+
T Consensus 2 vvi~apTGsGKT-----~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f 53 (358)
T TIGR01587 2 LVIEAPTGYGKT-----EAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELF 53 (358)
T ss_pred EEEEeCCCCCHH-----HHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHh
Confidence 589999999999 6666666665555567899999999999999999998743
No 79
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=97.85 E-value=2.5e-05 Score=86.56 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC--
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI-- 500 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l-- 500 (651)
.++..|++|+-.+. .++-.|.|-.|+||| ..|+.-..+++..+|+.||+++..|..-+..+-.++-+..
T Consensus 162 nfD~~Q~kaa~~~~----~G~qrIrGLAGSGKT-----~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~ 232 (660)
T COG3972 162 NFDTDQTKAAFQSG----FGKQRIRGLAGSGKT-----ELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFFFM 232 (660)
T ss_pred cccchhheeeeecC----CchhhhhcccCCCch-----hHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHHHH
Confidence 56788888875533 346689999999999 9999888888888999999999999988877766655411
Q ss_pred -----C--CcchhhhccccccccCCcHHHHHhhhccccc-------cCCChhhhhcccceEeeehhcchhhhhcCCCCCC
Q 006311 501 -----P--ASEMFRANAAFREADGVSDEIFQVSLVEREC-------FSCPPLEELRQYKVISSTFVSSFRLHNQGITAGH 566 (651)
Q Consensus 501 -----~--~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~-------f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~ 566 (651)
+ +...++-+...-.-...-......|..-... |+...++.+ +.--....
T Consensus 233 ~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli-----------------~~~~~~~~ 295 (660)
T COG3972 233 RVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELI-----------------ADINNKKA 295 (660)
T ss_pred HhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHH-----------------Hhhhcccc
Confidence 0 1123333222111111111111112111111 221111111 11012346
Q ss_pred ccEEEEecCCCCChHhHHHHHhccc-cCCCeEEEEeCCCCC
Q 006311 567 FSHIFLIDASSATEPETMIVLGNLA-NENTRVIVTGAPHNS 606 (651)
Q Consensus 567 F~~IiIDEAsQatEpE~LIpL~~la-~~~~rvVLaGD~~QL 606 (651)
+|||+|||+.. -|+..+-|..+. +..+|+|.|+|.-|-
T Consensus 296 yD~ilIDE~QD--FP~~F~~Lcf~~tkd~KrlvyAyDelQn 334 (660)
T COG3972 296 YDYILIDESQD--FPQSFIDLCFMVTKDKKRLVYAYDELQN 334 (660)
T ss_pred ccEEEeccccc--CCHHHHHHHHHHhcCcceEEEehHhhhc
Confidence 99999999853 466677666443 345799999999995
No 80
>PRK00254 ski2-like helicase; Provisional
Probab=97.81 E-value=9e-05 Score=87.71 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..||+.|.+|+...+.. ..-+++.+|.|+||| .+..-++++.+.. .+.++++++|+.+-|+...+++.. +.
T Consensus 22 ~~l~~~Q~~ai~~~~~~--g~nvlv~apTGsGKT-----~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~-~~ 92 (720)
T PRK00254 22 EELYPPQAEALKSGVLE--GKNLVLAIPTASGKT-----LVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKD-WE 92 (720)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEECCCCcHHH-----HHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHH-Hh
Confidence 47899999999874331 457899999999999 5543444444332 477999999999999999888764 11
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-CCCCCccEEEEecCCCCCh
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDEAsQatE 580 (651)
.. -+++.... ++ +. ...+.+.+++|||+|......+...+ ......++||||||-...+
T Consensus 93 ~~-g~~v~~~~-----------------Gd-~~-~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~ 152 (720)
T PRK00254 93 KL-GLRVAMTT-----------------GD-YD-STDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGS 152 (720)
T ss_pred hc-CCEEEEEe-----------------CC-CC-CchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCC
Confidence 10 01221110 00 00 01123467889999976554433211 1123579999999976643
No 81
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.79 E-value=8.7e-05 Score=91.83 Aligned_cols=132 Identities=11% Similarity=0.087 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 502 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~ 502 (651)
.+.+-|+.++..++. ...+++++|+||||| .+..-++. .+.. .+.++||.+||..-|.++.+++......
T Consensus 78 ~p~~iQ~~~i~~il~---G~d~vi~ApTGsGKT-----~f~l~~~~-~l~~-~g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLR---GDSFAIIAPTGVGKT-----TFGLAMSL-FLAK-KGKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred CCcHHHHHHHHHHhC---CCeEEEECCCCCCHH-----HHHHHHHH-HHHh-cCCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 567889999999997 347889999999999 54433333 3332 4789999999999999999988763221
Q ss_pred c--chhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCCCC
Q 006311 503 S--EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 503 ~--~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQa 578 (651)
. ...+++.. ...++..-+. . ..+.+ ...+|||+|.......... +.. +|++||||||-++
T Consensus 148 ~~i~~~~i~~~---~Gg~~~~e~~-~----------~~~~l~~~~~dIlV~Tp~rL~~~~~~-l~~-~~~~iVvDEaD~~ 211 (1171)
T TIGR01054 148 AGVGTVNIGAY---HSRLPTKEKK-E----------FMERIENGDFDILITTTMFLSKNYDE-LGP-KFDFIFVDDVDAL 211 (1171)
T ss_pred cCCceeeeeee---cCCCCHHHHH-H----------HHHHHhcCCCCEEEECHHHHHHHHHH-hcC-CCCEEEEeChHhh
Confidence 1 11111100 0011111000 0 00111 2478999998765443322 222 7999999999877
Q ss_pred Ch
Q 006311 579 TE 580 (651)
Q Consensus 579 tE 580 (651)
.+
T Consensus 212 L~ 213 (1171)
T TIGR01054 212 LK 213 (1171)
T ss_pred hh
Confidence 65
No 82
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.79 E-value=0.00019 Score=76.12 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCC----eEEEEccChhhHHHHHHHHHh
Q 006311 425 DSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS----RILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~----rILVcApSNsAaD~l~~rL~~ 498 (651)
-+.|.+.+..+... ......+|..|.||||| .++.-+++..+...+.. +|+++++|++-.+..+..+.+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKT-----l~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKT-----LSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchh-----HHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 67899977776653 23568999999999999 66655554444433333 899999999988877766643
No 83
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.79 E-value=0.00019 Score=76.12 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCC----eEEEEccChhhHHHHHHHHHh
Q 006311 425 DSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS----RILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~----rILVcApSNsAaD~l~~rL~~ 498 (651)
-+.|.+.+..+... ......+|..|.||||| .++.-+++..+...+.. +|+++++|++-.+..+..+.+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKT-----l~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKT-----LSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchh-----HHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 67899977776653 23568999999999999 66655554444433333 899999999988877766643
No 84
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.72 E-value=0.00013 Score=90.12 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchh
Q 006311 427 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMF 506 (651)
Q Consensus 427 ~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~ 506 (651)
+.+..+...+. .+..++|.|++|+||| +.+-.+++..-. ....+|+++-|-..||-.+++|+.+.+...---
T Consensus 70 ~~~~~Il~~l~--~~~vvii~g~TGSGKT-----TqlPq~lle~~~-~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~ 141 (1283)
T TIGR01967 70 AKREDIAEAIA--ENQVVIIAGETGSGKT-----TQLPKICLELGR-GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGE 141 (1283)
T ss_pred HHHHHHHHHHH--hCceEEEeCCCCCCcH-----HHHHHHHHHcCC-CCCceEecCCccHHHHHHHHHHHHHHhCCCcce
Confidence 34566666664 2668999999999999 655544443221 234578888899999999999998844221111
Q ss_pred hhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCC-CCChHhHHH
Q 006311 507 RANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS-SATEPETMI 585 (651)
Q Consensus 507 Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs-QatEpE~LI 585 (651)
.+++.-|..+.+ =.+.+|+++|-...-.....+-.-..+++||||||- ...+.+.++
T Consensus 142 ~VGY~vR~~~~~----------------------s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL 199 (1283)
T TIGR01967 142 KVGYKVRFHDQV----------------------SSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLL 199 (1283)
T ss_pred EEeeEEcCCccc----------------------CCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHH
Confidence 122221211000 035678888776543333222223469999999998 477777776
Q ss_pred HHh-ccc--cCCCeEEEEeCC
Q 006311 586 VLG-NLA--NENTRVIVTGAP 603 (651)
Q Consensus 586 pL~-~la--~~~~rvVLaGD~ 603 (651)
.+. .+. .++-++|+..-.
T Consensus 200 ~lLk~il~~rpdLKlIlmSAT 220 (1283)
T TIGR01967 200 GYLKQLLPRRPDLKIIITSAT 220 (1283)
T ss_pred HHHHHHHhhCCCCeEEEEeCC
Confidence 532 121 234567766544
No 85
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.70 E-value=0.00014 Score=86.36 Aligned_cols=132 Identities=8% Similarity=-0.066 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..+.+-|.+|+..++.+ .-+++..|.||||| ....-.+++.+...++.++|+.+||.+-|....+++....
T Consensus 35 ~~p~~~Q~~ai~~il~G---~nvvv~apTGSGKT-----la~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~- 105 (742)
T TIGR03817 35 HRPWQHQARAAELAHAG---RHVVVATGTASGKS-----LAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT- 105 (742)
T ss_pred CcCCHHHHHHHHHHHCC---CCEEEECCCCCcHH-----HHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-
Confidence 47899999999999873 45899999999999 6655555555554577899999999999999999887521
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-----CCCCCccEEEEecCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-----ITAGHFSHIFLIDAS 576 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-----~~~~~F~~IiIDEAs 576 (651)
..-+++... ..+.+.+.+ .....+.+||++|........... .-..+.++||||||-
T Consensus 106 -~~~i~v~~~---~Gdt~~~~r--------------~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 106 -LRGVRPATY---DGDTPTEER--------------RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred -cCCeEEEEE---eCCCCHHHH--------------HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 001111110 000111100 111245789999986543111000 002357899999998
Q ss_pred CCCh
Q 006311 577 SATE 580 (651)
Q Consensus 577 QatE 580 (651)
....
T Consensus 168 ~~~g 171 (742)
T TIGR03817 168 SYRG 171 (742)
T ss_pred hccC
Confidence 7643
No 86
>PLN03025 replication factor C subunit; Provisional
Probab=97.68 E-value=0.00024 Score=75.97 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
|++..+.++.++...+.+.++++|||||||| |++.++...+
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKT------tla~~la~~l 58 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKT------TSILALAHEL 58 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHH------HHHHHHHHHH
Confidence 6667777777665444566899999999999 6666655443
No 87
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.64 E-value=9.9e-05 Score=89.19 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHH-HHHh------CCCCeEEEEccChhhHHHHHHH
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ-IRRR------SPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q-ll~~------~~~~rILVcApSNsAaD~l~~r 495 (651)
.+++-|++|+..++. ..-++|..|.||||| ....-.+++ ++.. ..+.++|+++|+.+-+..+.++
T Consensus 32 ~~tpiQ~~Ai~~il~---g~nvli~APTGSGKT-----laa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~ 103 (876)
T PRK13767 32 TFTPPQRYAIPLIHE---GKNVLISSPTGSGKT-----LAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRN 103 (876)
T ss_pred CCCHHHHHHHHHHHc---CCCEEEECCCCCcHH-----HHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHH
Confidence 589999999999887 346899999999999 543333333 3321 1245799999999999988887
Q ss_pred HHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh-cccceEeeehhcchhhhhcC-C--CCCCccEEE
Q 006311 496 LMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLHNQG-I--TAGHFSHIF 571 (651)
Q Consensus 496 L~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L-~~~rIVvtT~ssa~~l~~~~-~--~~~~F~~Ii 571 (651)
+...+.. +.++... .. ..++ .+ ......++.-.......+ ...+|+|||..+...+.... + .....++||
T Consensus 104 L~~~l~~--i~~~~~~-~g-~~~~-~i-~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VV 177 (876)
T PRK13767 104 LEEPLTE--IREIAKE-RG-EELP-EI-RVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVI 177 (876)
T ss_pred HHHHHHH--HHHHHHh-cC-CCcC-Ce-eEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEE
Confidence 7642110 0000000 00 0000 00 000001110000001112 34689999988765443211 1 113578999
Q ss_pred EecCCCCCh
Q 006311 572 LIDASSATE 580 (651)
Q Consensus 572 IDEAsQatE 580 (651)
||||-...+
T Consensus 178 IDE~H~l~~ 186 (876)
T PRK13767 178 VDEIHSLAE 186 (876)
T ss_pred Eechhhhcc
Confidence 999976553
No 88
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.61 E-value=0.00032 Score=86.67 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=84.7
Q ss_pred HHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhh
Q 006311 428 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFR 507 (651)
Q Consensus 428 Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~R 507 (651)
.+..+..++. .+..++|.|++||||| +.|-..++..- .....+|.++-|-..||-.+++|+.+.+...---.
T Consensus 78 ~r~~Il~ai~--~~~VviI~GeTGSGKT-----TqlPq~lle~g-~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 78 KKQDILEAIR--DHQVVIVAGETGSGKT-----TQLPKICLELG-RGVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHHH--hCCeEEEECCCCCCHH-----HHHHHHHHHcC-CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 4455555554 2678899999999999 65544443321 11234677777999999999999987433210001
Q ss_pred hccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCC-CCChHhHHHH
Q 006311 508 ANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS-SATEPETMIV 586 (651)
Q Consensus 508 v~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs-QatEpE~LIp 586 (651)
++..-|. ++.. -.+.+|+++|....-.....+..-..+++||||||- ...+.+.+..
T Consensus 150 VGY~vrf---------------~~~~-------s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg 207 (1294)
T PRK11131 150 VGYKVRF---------------NDQV-------SDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILG 207 (1294)
T ss_pred eceeecC---------------cccc-------CCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHH
Confidence 1111110 0000 135688998877654444333234579999999998 4666666543
Q ss_pred H-hcccc--CCCeEEEEeCC
Q 006311 587 L-GNLAN--ENTRVIVTGAP 603 (651)
Q Consensus 587 L-~~la~--~~~rvVLaGD~ 603 (651)
+ ..+.. ++.|+|+..-.
T Consensus 208 ~Lk~lL~~rpdlKvILmSAT 227 (1294)
T PRK11131 208 YLKELLPRRPDLKVIITSAT 227 (1294)
T ss_pred HHHHhhhcCCCceEEEeeCC
Confidence 2 21221 24577776544
No 89
>PRK04296 thymidine kinase; Provisional
Probab=97.60 E-value=8.1e-05 Score=73.93 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=27.6
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
..+|.||||+||| +.+...+.+.... +.+|++..|
T Consensus 4 i~litG~~GsGKT-----T~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKS-----TELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHH-----HHHHHHHHHHHHc--CCeEEEEec
Confidence 5789999999999 7777777666554 788888844
No 90
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.58 E-value=0.00019 Score=80.85 Aligned_cols=127 Identities=11% Similarity=0.010 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..+.+.|.+|+..++.+ .-+++..|.|+||| .+..-.+ +. .+...||++|+.+-+....+++...
T Consensus 10 ~~~r~~Q~~ai~~~l~g---~dvlv~apTGsGKT-----l~y~lp~---l~--~~~~~lVi~P~~~L~~dq~~~l~~~-- 74 (470)
T TIGR00614 10 SSFRPVQLEVINAVLLG---RDCFVVMPTGGGKS-----LCYQLPA---LC--SDGITLVISPLISLMEDQVLQLKAS-- 74 (470)
T ss_pred CCCCHHHHHHHHHHHcC---CCEEEEcCCCCcHh-----HHHHHHH---HH--cCCcEEEEecHHHHHHHHHHHHHHc--
Confidence 57899999999999983 36899999999999 4322111 12 2567899999998887777777541
Q ss_pred CcchhhhccccccccCCcHH-HHHhhhccccccCCChhhhhcccceEeeehhcchh---hhhcCC-CCCCccEEEEecCC
Q 006311 502 ASEMFRANAAFREADGVSDE-IFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR---LHNQGI-TAGHFSHIFLIDAS 576 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~-l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~---l~~~~~-~~~~F~~IiIDEAs 576 (651)
+....-+++. ...+ .... . ... .-.+.+|+++|...... +.. .+ ...++++|+||||-
T Consensus 75 gi~~~~l~~~------~~~~~~~~i--~-~~~-------~~~~~~il~~TPe~l~~~~~~~~-~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 75 GIPATFLNSS------QSKEQQKNV--L-TDL-------KDGKIKLLYVTPEKCSASNRLLQ-TLEERKGITLIAVDEAH 137 (470)
T ss_pred CCcEEEEeCC------CCHHHHHHH--H-HHH-------hcCCCCEEEECHHHHcCchhHHH-HHHhcCCcCEEEEeCCc
Confidence 1111111110 1100 0000 0 000 11346788888764321 111 12 34579999999997
Q ss_pred CCCh
Q 006311 577 SATE 580 (651)
Q Consensus 577 QatE 580 (651)
...+
T Consensus 138 ~i~~ 141 (470)
T TIGR00614 138 CISQ 141 (470)
T ss_pred ccCc
Confidence 6654
No 91
>PRK14701 reverse gyrase; Provisional
Probab=97.58 E-value=0.00024 Score=90.27 Aligned_cols=133 Identities=13% Similarity=0.070 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 502 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~ 502 (651)
.+.+.|++++..++. ..-+++++|.||||| ....-+.+ .+. ..+.++||++||..-+.++.+++......
T Consensus 79 ~pt~iQ~~~i~~il~---G~d~li~APTGsGKT-----l~~~~~al-~~~-~~g~~aLVl~PTreLa~Qi~~~l~~l~~~ 148 (1638)
T PRK14701 79 EFWSIQKTWAKRILR---GKSFSIVAPTGMGKS-----TFGAFIAL-FLA-LKGKKCYIILPTTLLVKQTVEKIESFCEK 148 (1638)
T ss_pred CCCHHHHHHHHHHHc---CCCEEEEEcCCCCHH-----HHHHHHHH-HHH-hcCCeEEEEECHHHHHHHHHHHHHHHHhh
Confidence 478899999999998 346899999999999 53222222 222 24779999999999999999998762111
Q ss_pred cc-hhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 503 SE-MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 503 ~~-i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
.. -+++.... ..++..-+. . ..+.+ ...+|+++|.......... +...+|++||||||-.+.
T Consensus 149 ~~~~v~v~~~~---g~~s~~e~~-~----------~~~~l~~g~~dILV~TPgrL~~~~~~-l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 149 ANLDVRLVYYH---SNLRKKEKE-E----------FLERIENGDFDILVTTAQFLARNFPE-MKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred cCCceeEEEEe---CCCCHHHHH-H----------HHHHHhcCCCCEEEECCchhHHhHHH-HhhCCCCEEEEECceecc
Confidence 00 01111100 011111000 0 00112 2478999997644332221 222579999999998765
Q ss_pred h
Q 006311 580 E 580 (651)
Q Consensus 580 E 580 (651)
+
T Consensus 214 ~ 214 (1638)
T PRK14701 214 K 214 (1638)
T ss_pred c
Confidence 3
No 92
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.58 E-value=0.00041 Score=87.33 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCC-CCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLC-NNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPG-TGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
.+|..|..|+..++. .++...+|.|.-| |||| ++|. .+..+.+. .+.+|.+.||++.|+..|.+.. .+.
T Consensus 281 ~~~~~q~~Av~~il~-dr~~v~iv~~~GgAtGKt-----t~l~-~l~~~a~~-~G~~V~~lApt~~a~~~L~e~~--gi~ 350 (1623)
T PRK14712 281 PRTAGYSDAVSVLAQ-DRPSLAIVSGQGGAAGQR-----ERVA-ELVMMARE-QGREVQIIAADRRSQMNLKQDE--RLS 350 (1623)
T ss_pred ccchhHHHHHHHHhc-CCCceEEEEecccccccH-----HHHH-HHHHHHHh-CCcEEEEEeCCHHHHHHHHhcc--CCC
Confidence 467899999999995 3344555555555 9999 6666 45555664 6999999999999998887552 222
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp 581 (651)
...+-+... | +. ...+.. =+++|||||++..--
T Consensus 351 a~Tva~~~~----------------------~-------l~----------------~~~~~~--~~ilIVDEA~~Ls~r 383 (1623)
T PRK14712 351 GELITGRRQ----------------------L-------LE----------------GMAFTP--GSTVIVDQGEKLSLK 383 (1623)
T ss_pred chhhhhhhh----------------------h-------hc----------------ccCCCC--CcEEEEECCCcCCHH
Confidence 221111000 0 00 001111 279999999998877
Q ss_pred hHHHHHhccccCCCeEEEEeCCCCCCc
Q 006311 582 ETMIVLGNLANENTRVIVTGAPHNSPS 608 (651)
Q Consensus 582 E~LIpL~~la~~~~rvVLaGD~~QL~P 608 (651)
+.+--+......+.| |++||.+|+.-
T Consensus 384 dm~~Ll~~A~~~gar-VllgD~~Q~~a 409 (1623)
T PRK14712 384 ETLTLLDGAARHNVQ-VLITDSGQRTG 409 (1623)
T ss_pred HHHHHHHHHHhcCCE-EEEEechhhhh
Confidence 765555422235678 66889999944
No 93
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.54 E-value=0.00039 Score=81.59 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHH---------HHH----hCCCCeEEEEccChhhHHHH
Q 006311 426 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ---------IRR----RSPKSRILICAPWNRTCDKL 492 (651)
Q Consensus 426 ~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q---------ll~----~~~~~rILVcApSNsAaD~l 492 (651)
.-|++++..++. ...++++|+.||||| ..+-..+++ .+. .....+|+|.+|+..+|.++
T Consensus 167 ~iQ~qil~~i~~---gkdvIv~A~TGSGKT-----tqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi 238 (675)
T PHA02653 167 DVQLKIFEAWIS---RKPVVLTGGTGVGKT-----SQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLH 238 (675)
T ss_pred HHHHHHHHHHHh---CCCEEEECCCCCCch-----hHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHH
Confidence 456666666665 568999999999999 554333322 121 11356899999999999998
Q ss_pred HHHHHh
Q 006311 493 MECLMK 498 (651)
Q Consensus 493 ~~rL~~ 498 (651)
.+++.+
T Consensus 239 ~~~i~~ 244 (675)
T PHA02653 239 SITLLK 244 (675)
T ss_pred HHHHHH
Confidence 888875
No 94
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.53 E-value=0.00014 Score=90.73 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEEEccChhhHHHHHHHHHh
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+++++|++||.. +....+|.+.+||||| .||++.+.+++... ...+||++|+||.||..+-+|+.+
T Consensus 1 ~~t~~Q~~ai~~-----~~~~~lv~A~AGsGKT-----~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIYT-----RGQNILVSASAGSGKT-----AVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHhC-----CCCCEEEEecCCCcHH-----HHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 368999999973 2457899999999999 99999998877542 235799999999999999988877
No 95
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00045 Score=77.13 Aligned_cols=134 Identities=18% Similarity=0.059 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHH-HHHHHhCCCCeEEEEccChhhHHHHHHHHHh--hCC
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAV-LQIRRRSPKSRILICAPWNRTCDKLMECLMK--DIP 501 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI-~qll~~~~~~rILVcApSNsAaD~l~~rL~~--~l~ 501 (651)
-..|...+..++.. -+||.=|.|=||| +|+.++ ...++..++ +||+.|||-.-+.+=++.+.+ .++
T Consensus 17 R~YQ~~i~a~al~~----NtLvvlPTGLGKT------~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 17 RLYQLNIAAKALFK----NTLVVLPTGLGKT------FIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred HHHHHHHHHHHhhc----CeEEEecCCccHH------HHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCC
Confidence 56788888888862 5688889999999 555554 445665555 999999999999998888877 445
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcch-hhhhcCCCCCCccEEEEecCCCCCh
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSF-RLHNQGITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~-~l~~~~~~~~~F~~IiIDEAsQatE 580 (651)
+.++.-+... ++++-+ .+.-.+.+|+++|.-..- .+....+....|++|++|||..|+-
T Consensus 86 ~~~i~~ltGe------v~p~~R--------------~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvG 145 (542)
T COG1111 86 EDEIAALTGE------VRPEER--------------EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVG 145 (542)
T ss_pred hhheeeecCC------CChHHH--------------HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccC
Confidence 5544433322 222211 112257799999998664 3444456677899999999999998
Q ss_pred HhHHHHHhc
Q 006311 581 PETMIVLGN 589 (651)
Q Consensus 581 pE~LIpL~~ 589 (651)
--+.+-++.
T Consensus 146 nyAYv~Va~ 154 (542)
T COG1111 146 NYAYVFVAK 154 (542)
T ss_pred cchHHHHHH
Confidence 777776664
No 96
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=97.47 E-value=0.0003 Score=75.55 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 502 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~ 502 (651)
..++.|+.-+++|.. ....+=.||.||||| +.-+....+.+....-.||++.-| |+| +-+++. .+|+
T Consensus 128 ~kt~~Q~~y~eai~~---~di~fGiGpAGTGKT-----yLava~av~al~~~~v~rIiLtRP---aVE-AGEklG-fLPG 194 (348)
T COG1702 128 PKTPGQNMYPEAIEE---HDIVFGIGPAGTGKT-----YLAVAKAVDALGAGQVRRIILTRP---AVE-AGEKLG-FLPG 194 (348)
T ss_pred ecChhHHHHHHHHHh---cCeeeeecccccCCh-----hhhHHhHhhhhhhcccceeeecCc---chh-cCcccC-cCCC
Confidence 569999999999987 678888999999999 766666667777666779999988 443 344443 3444
Q ss_pred cchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceE-eeehhcchhhhhcCCCCCCccEEEEecCCCCChH
Q 006311 503 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVI-SSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 503 ~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIV-vtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp 581 (651)
..-..+...-|++.+.--++.... .. +.+....|| ++-+ +......++. -.||+|||.- +-+
T Consensus 195 dl~eKvdPylRPLyDAl~d~l~~~-----~~-----~~~~e~~vIEiAPl---AyMRGRTL~d---AfVIlDEaQN-tT~ 257 (348)
T COG1702 195 DLREKVDPYLRPLYDALYDILGAE-----RV-----EALDERGVIEIAPL---AYMRGRTLND---AFVILDEAQN-TTV 257 (348)
T ss_pred chhhhcccccccHHHHHHHHhhHH-----HH-----hhhhhcCcEEecch---hhhhcCCCCC---eEEEEecccc-cch
Confidence 321111111122111111111111 00 011111111 1111 1122222322 3799999966 555
Q ss_pred hHH-HHHhccccCCCeEEEEeCCCC--CCccccChHHHh------------------CCCCccHHHHHHcC
Q 006311 582 ETM-IVLGNLANENTRVIVTGAPHN--SPSRVRSDIARK------------------NGLKMSYFERLCLT 631 (651)
Q Consensus 582 E~L-IpL~~la~~~~rvVLaGD~~Q--L~PvV~S~~a~~------------------~GL~~SLfERL~~~ 631 (651)
+-| +-|. --.-+.+.|+.||+.| ||..+.|.+... --..+.++.|.+..
T Consensus 258 ~QmKMfLT-RiGf~skmvItGD~tQiDLp~~vkSGL~~a~~il~~V~~i~f~~f~~~DvVRhplv~~iv~a 327 (348)
T COG1702 258 GQMKMFLT-RIGFESKMVITGDITQIDLPRGVKSGLHPALEILKHVEDIDFAGFNLKDVVRHPLVGRIVGA 327 (348)
T ss_pred hhhceeee-eecCCceEEEEcCcccccCCCcccccchHHHHHhCCCCceeEeccccceEECcHHHHHHHHH
Confidence 443 2233 2234679999999999 677777764321 11346777777765
No 97
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=97.45 E-value=0.00074 Score=78.87 Aligned_cols=133 Identities=13% Similarity=0.119 Sum_probs=90.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 421 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
+..|-..|.+-++.+|+ .-++|.-|.|.||| ...+-+++..++-.+..+|++.||+---+.+-..++....
T Consensus 60 ~~~lR~YQ~eivq~ALg----kNtii~lPTG~GKT-----fIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 60 NLELRNYQEELVQPALG----KNTIIALPTGSGKT-----FIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred cccccHHHHHHhHHhhc----CCeEEEeecCCCcc-----chHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhcc
Confidence 35788999999999995 25799999999999 7777778888888899999999999887777665554321
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-CCC-CCccEEEEecCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITA-GHFSHIFLIDASSA 578 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~~~-~~F~~IiIDEAsQa 578 (651)
.+ .++.+. ..+..-.....+.....+|+++|+-..-.....+ .+. ..|+++|||||-.+
T Consensus 131 ~~---~~~T~~----------------l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra 191 (746)
T KOG0354|consen 131 IP---YSVTGQ----------------LGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRT 191 (746)
T ss_pred Cc---ccceee----------------ccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccc
Confidence 11 111110 0000111111244567899999998765433222 233 56999999999887
Q ss_pred ChH
Q 006311 579 TEP 581 (651)
Q Consensus 579 tEp 581 (651)
+--
T Consensus 192 ~kn 194 (746)
T KOG0354|consen 192 SKN 194 (746)
T ss_pred ccc
Confidence 754
No 98
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00049 Score=78.56 Aligned_cols=135 Identities=16% Similarity=0.040 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH--hCCCCe-EEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR--RSPKSR-ILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~--~~~~~r-ILVcApSNsAaD~l~~rL~~ 498 (651)
...++-|.+|+-.++.+ .=++.+.+.||||| ....--+++.+. ...... .||.+||...|.++.+.+.+
T Consensus 50 ~~pt~IQ~~~IP~~l~g---~Dvi~~A~TGsGKT-----~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~ 121 (513)
T COG0513 50 EEPTPIQLAAIPLILAG---RDVLGQAQTGTGKT-----AAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRK 121 (513)
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCChHH-----HHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHH
Confidence 45688999999999983 56789999999999 544444444444 222223 89999999999999998876
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhc-ccceEeeehhcchhhhhc-CCCCCCccEEEEecCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELR-QYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDAS 576 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~-~~rIVvtT~ssa~~l~~~-~~~~~~F~~IiIDEAs 576 (651)
......-+|+.. .+.+..+. ...+.|. ..+|||+|..-.-.+... .+.-.+..++++|||-
T Consensus 122 ~~~~~~~~~~~~----------------i~GG~~~~-~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 122 LGKNLGGLRVAV----------------VYGGVSIR-KQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred HHhhcCCccEEE----------------EECCCCHH-HHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh
Confidence 211110111100 00110110 1112233 388999998754444433 3566678999999999
Q ss_pred CCChH
Q 006311 577 SATEP 581 (651)
Q Consensus 577 QatEp 581 (651)
++++.
T Consensus 185 rmLd~ 189 (513)
T COG0513 185 RMLDM 189 (513)
T ss_pred hhhcC
Confidence 97765
No 99
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00057 Score=74.76 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=31.0
Q ss_pred CccEEEEecCCCCChH--hHHHHHhccccCCCeEEEEeCCCCCCcccc
Q 006311 566 HFSHIFLIDASSATEP--ETMIVLGNLANENTRVIVTGAPHNSPSRVR 611 (651)
Q Consensus 566 ~F~~IiIDEAsQatEp--E~LIpL~~la~~~~rvVLaGD~~QL~PvV~ 611 (651)
.=+++||||...-.-. ++++|.. +++.|+|+|-.-.-|-+..
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~v----E~G~iilIGATTENPsF~l 147 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPHV----ENGTIILIGATTENPSFEL 147 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhhh----cCCeEEEEeccCCCCCeee
Confidence 4568999998665443 5677776 6789999999888776543
No 100
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.39 E-value=0.00048 Score=70.61 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
|++-.+-+..+....+-|-.+|.|||||||| +.+-.+...++
T Consensus 32 Ne~tv~rl~via~~gnmP~liisGpPG~GKT-----Tsi~~LAr~LL 73 (333)
T KOG0991|consen 32 NEDTVERLSVIAKEGNMPNLIISGPPGTGKT-----TSILCLARELL 73 (333)
T ss_pred CHHHHHHHHHHHHcCCCCceEeeCCCCCchh-----hHHHHHHHHHh
Confidence 7766666666655334567899999999999 55544444433
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.37 E-value=0.0016 Score=79.00 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=95.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|-+.|..++..++... .+-+||-=..|.||| .....++.+++......+|||++|+. -..+=...+.+.+.
T Consensus 151 ~~l~pHQl~~~~~vl~~~-~~R~LLADEvGLGKT-----IeAglil~~l~~~g~~~rvLIVvP~s-L~~QW~~El~~kF~ 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRH-APRVLLADEVGLGKT-----IEAGMIIHQQLLTGRAERVLILVPET-LQHQWLVEMLRRFN 223 (956)
T ss_pred CCCCHHHHHHHHHHhhcc-CCCEEEEeCCcCcHH-----HHHHHHHHHHHHcCCCCcEEEEcCHH-HHHHHHHHHHHHhC
Confidence 568899999999887632 345788889999999 66666666666654567999999973 44444444433211
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhh--hhcCCCCCCccEEEEecCCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL--HNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l--~~~~~~~~~F~~IiIDEAsQat 579 (651)
- . +.+....|. ..+..... .....+++++++......- ....+....||+||||||.++.
T Consensus 224 l-~-~~i~~~~~~--------~~~~~~~~--------~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk 285 (956)
T PRK04914 224 L-R-FSLFDEERY--------AEAQHDAD--------NPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLV 285 (956)
T ss_pred C-C-eEEEcCcch--------hhhccccc--------CccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhc
Confidence 0 0 111111110 00000000 1123568888888765431 1122344579999999998875
Q ss_pred ----hH----hHHHHHhccccCCCeEEEEeCCCCCCcc
Q 006311 580 ----EP----ETMIVLGNLANENTRVIVTGAPHNSPSR 609 (651)
Q Consensus 580 ----Ep----E~LIpL~~la~~~~rvVLaGD~~QL~Pv 609 (651)
.+ ..+-.|+. ....++.|.|=|.|.++.
T Consensus 286 ~~~~~~s~~y~~v~~La~--~~~~~LLLTATP~q~~~~ 321 (956)
T PRK04914 286 WSEEAPSREYQVVEQLAE--VIPGVLLLTATPEQLGQE 321 (956)
T ss_pred cCCCCcCHHHHHHHHHhh--ccCCEEEEEcCcccCCcH
Confidence 12 22333331 223689999999998774
No 102
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0014 Score=73.39 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHhcc-CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 425 DSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~-~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
|..-..|...+.... ...|++|+|||||||| +.+..+..++.+..++.+|+.++.
T Consensus 113 n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKT-----HLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 113 NSFAYHAALEVAKNPGRYNPLFIYGGVGLGKT-----HLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred hHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHH-----HHHHHHHHHHHHhCCCCeEEEEEH
Confidence 443334444444322 2357999999999999 444433444555556778887753
No 103
>PRK08181 transposase; Validated
Probab=97.36 E-value=0.0016 Score=68.53 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
+.+|..|..|+...-.- ....-++|+|||||||| +....+..++++. +.+|+.++ +..++..+.
T Consensus 86 ~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKT-----HLa~Aia~~a~~~--g~~v~f~~-----~~~L~~~l~ 150 (269)
T PRK08181 86 PMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKS-----HLAAAIGLALIEN--GWRVLFTR-----TTDLVQKLQ 150 (269)
T ss_pred CCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHH-----HHHHHHHHHHHHc--CCceeeee-----HHHHHHHHH
Confidence 57899999998654211 22345899999999999 6555555555553 77787665 234555553
No 104
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.35 E-value=0.00086 Score=79.83 Aligned_cols=137 Identities=14% Similarity=0.093 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 502 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~ 502 (651)
.|++.|+.||...+-. ..=+||.-|.|+||| .+---+|++-+.. .+.+++..+|+++-|.+.++++.. +..
T Consensus 31 el~~~qq~av~~~~~~--~~N~li~aPTgsGKT-----lIA~lai~~~l~~-~~~k~vYivPlkALa~Ek~~~~~~-~~~ 101 (766)
T COG1204 31 ELFNPQQEAVEKGLLS--DENVLISAPTGSGKT-----LIALLAILSTLLE-GGGKVVYIVPLKALAEEKYEEFSR-LEE 101 (766)
T ss_pred HhhHHHHHHhhccccC--CCcEEEEcCCCCchH-----HHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHhhh-HHh
Confidence 7899999999987753 467899999999999 3333334444443 268999999999999999999872 100
Q ss_pred cchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-CCCCCccEEEEecCCCCChH
Q 006311 503 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 503 ~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDEAsQatEp 581 (651)
-=+|+.-.. ++... ..+.+.++.|||+|.-....+.... .-....+.|||||+..+.+.
T Consensus 102 -~GirV~~~T-----------------gD~~~--~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 102 -LGIRVGIST-----------------GDYDL--DDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred -cCCEEEEec-----------------CCccc--chhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc
Confidence 001221111 11111 1256789999999998776544221 12336899999999988877
Q ss_pred ------hHHHHHh
Q 006311 582 ------ETMIVLG 588 (651)
Q Consensus 582 ------E~LIpL~ 588 (651)
|+++.-.
T Consensus 162 ~RG~~lE~iv~r~ 174 (766)
T COG1204 162 TRGPVLESIVARM 174 (766)
T ss_pred ccCceehhHHHHH
Confidence 5555544
No 105
>KOG4284 consensus DEAD box protein [Transcription]
Probab=97.33 E-value=0.00015 Score=82.47 Aligned_cols=135 Identities=17% Similarity=0.147 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH-HhCCCCeEEEEccChhhHHHHHHHHHhhCCCc
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RRSPKSRILICAPWNRTCDKLMECLMKDIPAS 503 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll-~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~ 503 (651)
++-|..||-.++. .--.+||.--||||| .+.+-++.+-+ -+....+++|+|||..-|=.+-+-+.+.-+..
T Consensus 49 tkiQaaAIP~~~~---kmDliVQaKSGTGKT-----lVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf 120 (980)
T KOG4284|consen 49 TKIQAAAIPAIFS---KMDLIVQAKSGTGKT-----LVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSF 120 (980)
T ss_pred Cchhhhhhhhhhc---ccceEEEecCCCCce-----EEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccc
Confidence 5669999998887 345799999999999 55444444433 23345689999999987777766665421111
Q ss_pred chhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-CCCCCccEEEEecCCCCChHh
Q 006311 504 EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSATEPE 582 (651)
Q Consensus 504 ~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDEAsQatEpE 582 (651)
.=+| ++..-++.-....+..|.+.||||+|..-...|+..+ ++.+|.++.++|||-+..+.+
T Consensus 121 ~g~~-----------------csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~ 183 (980)
T KOG4284|consen 121 TGAR-----------------CSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTE 183 (980)
T ss_pred cCcc-----------------eEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchh
Confidence 1011 1111111111223456789999999998777777554 577899999999999998865
Q ss_pred HH
Q 006311 583 TM 584 (651)
Q Consensus 583 ~L 584 (651)
.+
T Consensus 184 sf 185 (980)
T KOG4284|consen 184 SF 185 (980)
T ss_pred hH
Confidence 43
No 106
>PRK09694 helicase Cas3; Provisional
Probab=97.31 E-value=0.00097 Score=80.34 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
...++-|+.+..... +++.++|.+|.|+||| .....++..+.......+|.++.||-+.++.+.+|+.+
T Consensus 285 ~~p~p~Q~~~~~~~~---~pgl~ileApTGsGKT-----EAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 285 YQPRQLQTLVDALPL---QPGLTIIEAPTGSGKT-----EAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCChHHHHHHHhhcc---CCCeEEEEeCCCCCHH-----HHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHH
Confidence 467888997744322 3678999999999999 66555555555544457999999999999999999875
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0011 Score=79.21 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchh
Q 006311 427 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMF 506 (651)
Q Consensus 427 ~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~ 506 (651)
..+..+..++. .+..++|.||+|+||| +-+-..+++... ..+.+|.++=|=.-||-.+++|+.+.+...---
T Consensus 53 ~~~~~i~~ai~--~~~vvii~getGsGKT-----TqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 53 AVRDEILKAIE--QNQVVIIVGETGSGKT-----TQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHH--hCCEEEEeCCCCCChH-----HHHHHHHHhhhc-ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 45566666665 3678999999999999 777666665443 235688888899999999999999855432112
Q ss_pred hhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC-CChHhHHH
Q 006311 507 RANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS-ATEPETMI 585 (651)
Q Consensus 507 Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ-atEpE~LI 585 (651)
-|++.-|..+.+. .+.+|-+.|-...-+....+-.-.++++||||||.. ....+.++
T Consensus 125 ~VGY~iRfe~~~s----------------------~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilL 182 (845)
T COG1643 125 TVGYSIRFESKVS----------------------PRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILL 182 (845)
T ss_pred eeeEEEEeeccCC----------------------CCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHH
Confidence 2344334322221 344565666554444333333334699999999963 33445555
Q ss_pred HHh
Q 006311 586 VLG 588 (651)
Q Consensus 586 pL~ 588 (651)
.+.
T Consensus 183 gll 185 (845)
T COG1643 183 GLL 185 (845)
T ss_pred HHH
Confidence 544
No 108
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.26 E-value=0.00054 Score=82.66 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 423 KLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
...+.|.+.+..|... ......+|..|+||||| ....-.++.... .+.+|+|+|||..-.+++..+
T Consensus 245 ~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT-----~ayLlp~~~~~~--~~~~vvi~t~t~~Lq~Ql~~~ 311 (850)
T TIGR01407 245 EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKT-----LGYLLPALYYAI--TEKPVVISTNTKVLQSQLLEK 311 (850)
T ss_pred ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchh-----HHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHH
Confidence 3568899855554432 23567899999999999 554333333333 467999999999988888764
No 109
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.25 E-value=0.0002 Score=65.31 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh----CCCCeEEEEccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----SPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~----~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
....+|+||||+||| +++.....++... ....-+.+.++.....+.+...+..
T Consensus 4 ~~~~~i~G~~G~GKT-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 60 (131)
T PF13401_consen 4 QRILVISGPPGSGKT-----TLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILE 60 (131)
T ss_dssp ---EEEEE-TTSSHH-----HHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHH-----HHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999 6665555554331 0233355555555556777777766
No 110
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.22 E-value=0.00066 Score=80.94 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEEEccChhhHHHHHHHHHh
Q 006311 424 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..+.|.+++..++.+ ..+.+++.|.||||| .+++...+.+.... ...++++|+||..-|+++.+.+.+
T Consensus 16 PtpiQ~~~i~~il~G--~~~v~~~apTGSGKT-----aa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 16 PFPWQLSLAERFVAG--QPPESCSTPTGLGKT-----SIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred CCHHHHHHHHHHHcC--CCcceEecCCCCccc-----HHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH
Confidence 688999999999973 457889999999999 55542222221211 233666688999999999988776
No 111
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.22 E-value=0.0029 Score=67.17 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+++..+.+...+...+.+.++++|||||||| |++.++...+.
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT------~la~~~~~~l~ 61 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKT------AAVRALARELY 61 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHH------HHHHHHHHHhc
Confidence 6677777777776444457999999999999 55655544443
No 112
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.19 E-value=0.0022 Score=81.90 Aligned_cols=126 Identities=15% Similarity=0.082 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCC-CCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCc
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCN-NFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS 503 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGT-GKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~ 503 (651)
+..|+.|+..++.. .....+|.|+-|. |++ +++..+..+... .+.+|.+.|||+.|++.|.+.. .+...
T Consensus 415 ~~~~~~av~~~~q~-~~~~~il~g~~G~aG~g------~~l~~l~~~a~~-~G~~V~glAPt~~a~~~L~~~~--gi~~~ 484 (1747)
T PRK13709 415 TAGYSDAVSVLAQD-RPSLAIVSGQGGAAGQR------ERVAELVMMARE-QGREVQILAADRRSQMNLKQDE--RLSGE 484 (1747)
T ss_pred chhhhHHHHHHhcc-cCcEEEEEcCCcchHHH------HHHHHHHHHHHh-CCcEEEEEeCcHHHHHHHHHhc--CCCcc
Confidence 56899999997763 3567889988885 555 444555566664 6899999999999998887652 22221
Q ss_pred chhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhH
Q 006311 504 EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPET 583 (651)
Q Consensus 504 ~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~ 583 (651)
.+.+. .| |. .. ..+. .=+++|||||++..--+.
T Consensus 485 Tva~~-----------------------~~-------l~-----------~~----~~~~--~~~ilIVDEAg~lsar~m 517 (1747)
T PRK13709 485 LITGR-----------------------RQ-------LQ-----------EG----MAFT--PGSTLIVDQAEKLSLKET 517 (1747)
T ss_pred eeehh-----------------------hh-------hc-----------cc----cCCC--CCcEEEEECCCcCCHHHH
Confidence 11110 00 00 00 0011 235999999999887776
Q ss_pred HHHHhccccCCCeEEEEeCCCCCC
Q 006311 584 MIVLGNLANENTRVIVTGAPHNSP 607 (651)
Q Consensus 584 LIpL~~la~~~~rvVLaGD~~QL~ 607 (651)
+--+......+.||||+||.+|++
T Consensus 518 ~~Ll~~A~~~~arvVllgd~~Q~a 541 (1747)
T PRK13709 518 LTLLDGAARHNVQVLILDSGQRTG 541 (1747)
T ss_pred HHHHHHHHHhCCEEEEECCccccc
Confidence 655553334568999999999986
No 113
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.19 E-value=0.001 Score=77.41 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..+.+.|++|+..++. ..-.++.+|.|+||| .+-. +-.+.. ...++|++|+.+-+....+.+..
T Consensus 24 ~~~r~~Q~~ai~~il~---g~dvlv~apTGsGKT-----l~y~--lpal~~---~g~tlVisPl~sL~~dqv~~l~~ 87 (607)
T PRK11057 24 QQFRPGQQEIIDAVLS---GRDCLVVMPTGGGKS-----LCYQ--IPALVL---DGLTLVVSPLISLMKDQVDQLLA 87 (607)
T ss_pred CCCCHHHHHHHHHHHc---CCCEEEEcCCCchHH-----HHHH--HHHHHc---CCCEEEEecHHHHHHHHHHHHHH
Confidence 4688999999999997 346789999999999 4322 222222 45789999999888877777764
No 114
>PRK06526 transposase; Provisional
Probab=97.15 E-value=0.0014 Score=68.41 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 481 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV 481 (651)
..+|..|...+...--..+..-++|+|||||||| +....+..++.+. +.+|+.
T Consensus 79 ~~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKT-----hLa~al~~~a~~~--g~~v~f 131 (254)
T PRK06526 79 RSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKT-----HLAIGLGIRACQA--GHRVLF 131 (254)
T ss_pred CCcchHHHHHHhcCchhhcCceEEEEeCCCCchH-----HHHHHHHHHHHHC--CCchhh
Confidence 4677776555432100023556899999999999 5555555555553 667765
No 115
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.001 Score=74.99 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=30.1
Q ss_pred CCccEEEEecCCCCChHhHHHHHh-cccc--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLG-NLAN--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~-~la~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||...+. ++.-+|. .+-. .+..+||+. ++.+|+|.|.|.
T Consensus 120 g~~KV~IIDEah~Ls~-~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 120 GKYKVYIIDEVHMLTD-QSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred CCCEEEEEechhhcCH-HHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 4688999999977765 3333332 2323 234555555 457888888776
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.0013 Score=78.45 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCc
Q 006311 424 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS 503 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~ 503 (651)
+=..|+.-.++++. ..-+-|..|+|+||| ++...+.+.+.. .+.|+++.-||-.-+.+..+||.+.....
T Consensus 83 ~ws~QR~WakR~~r---g~SFaiiAPTGvGKT-----Tfg~~~sl~~a~--kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 83 PWSAQRVWAKRLVR---GKSFAIIAPTGVGKT-----TFGLLMSLYLAK--KGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred chHHHHHHHHHHHc---CCceEEEcCCCCchh-----HHHHHHHHHHHh--cCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 34569999999987 446778899999999 665544443333 47999999999999999999998732111
Q ss_pred --chhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecC
Q 006311 504 --EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDA 575 (651)
Q Consensus 504 --~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEA 575 (651)
--+|+..++ .++..-++-. .+.+ ..++|+|+|..-...-+.. +...+||.||||++
T Consensus 153 ~~~~~~~~yh~----~l~~~ekee~-----------le~i~~gdfdIlitTs~FL~k~~e~-L~~~kFdfifVDDV 212 (1187)
T COG1110 153 GSLDVLVVYHS----ALPTKEKEEA-----------LERIESGDFDILITTSQFLSKRFEE-LSKLKFDFIFVDDV 212 (1187)
T ss_pred CCcceeeeecc----ccchHHHHHH-----------HHHHhcCCccEEEEeHHHHHhhHHH-hcccCCCEEEEccH
Confidence 112222111 1111111100 1122 3588999998866543322 44468999999997
No 117
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.11 E-value=0.0016 Score=75.34 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHhc-cCCC--ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSF-EGQS--PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~-~~~~--p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..|+..|++++..|..- ..+. -=||||-=|+||| .+.+-++++.+.. +.+..+.|||-.-|.+-.+.+.+
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKT-----vVA~laml~ai~~--G~Q~ALMAPTEILA~QH~~~~~~ 333 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKT-----VVALLAMLAAIEA--GYQAALMAPTEILAEQHYESLRK 333 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHH-----HHHHHHHHHHHHc--CCeeEEeccHHHHHHHHHHHHHH
Confidence 57999999999999974 2222 2489999999999 8888888888886 89999999999999999888887
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 577 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ 577 (651)
.+++.. +|+.--.- .+...-++... ... .-.+..|||+|-.-. ...+.....-.|||||=..
T Consensus 334 ~l~~~~-i~V~lLtG---~~kgk~r~~~l--~~l-------~~G~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 334 WLEPLG-IRVALLTG---SLKGKARKEIL--EQL-------ASGEIDIVVGTHALI----QDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HhhhcC-CeEEEeec---ccchhHHHHHH--HHH-------hCCCCCEEEEcchhh----hcceeecceeEEEEecccc
Confidence 555433 44432110 01110000000 000 015678999997643 3445555677999999544
No 118
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.11 E-value=0.003 Score=68.87 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=46.1
Q ss_pred HHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 428 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 428 Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
|.+|+..+... ....++|.+|+|+||| ....-++ +.. ..+.++.+|+++.++...+++...
T Consensus 2 Q~~~~~~~~~~-~~~~~~i~apTGsGKT-----~~~~~~~---l~~--~~~~~~~~P~~aL~~~~~~~~~~~ 62 (357)
T TIGR03158 2 QVATFEALQSK-DADIIFNTAPTGAGKT-----LAWLTPL---LHG--ENDTIALYPTNALIEDQTEAIKEF 62 (357)
T ss_pred HHHHHHHHHcC-CCCEEEEECCCCCCHH-----HHHHHHH---HHc--CCCEEEEeChHHHHHHHHHHHHHH
Confidence 88999998873 2356899999999999 4432222 232 457899999999999999888763
No 119
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.08 E-value=0.0019 Score=74.84 Aligned_cols=128 Identities=9% Similarity=0.006 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..+++.|.+|+..++.+ .-+++..|.|+||| .... +-.++. +...+|.+|+.+-+..-.+++...
T Consensus 12 ~~fr~~Q~~~i~~il~g---~dvlv~~PTG~GKT-----l~y~--lpal~~---~g~~lVisPl~sL~~dq~~~l~~~-- 76 (591)
T TIGR01389 12 DDFRPGQEEIISHVLDG---RDVLVVMPTGGGKS-----LCYQ--VPALLL---KGLTVVISPLISLMKDQVDQLRAA-- 76 (591)
T ss_pred CCCCHHHHHHHHHHHcC---CCEEEEcCCCccHh-----HHHH--HHHHHc---CCcEEEEcCCHHHHHHHHHHHHHc--
Confidence 47899999999999973 35789999999999 4422 111222 456889999998877777777641
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchh-hhhcCCCCCCccEEEEecCCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~-l~~~~~~~~~F~~IiIDEAsQat 579 (651)
+..+..+++ +++.+-.. ... .. -.-...+|++.|...... .....+....+++|+||||-...
T Consensus 77 gi~~~~~~s------~~~~~~~~-~~~-~~-------l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~ 140 (591)
T TIGR01389 77 GVAAAYLNS------TLSAKEQQ-DIE-KA-------LVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS 140 (591)
T ss_pred CCcEEEEeC------CCCHHHHH-HHH-HH-------HhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc
Confidence 111111211 11111000 000 00 001346777777654321 11112344578999999997554
No 120
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.05 E-value=0.0028 Score=65.26 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...+++|+..+... .+.+.++|.||+|+||| |++..+...+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKT------tl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKT------TLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHH------HHHHHHHHhcC
Confidence 56677777765432 23557899999999999 66665554433
No 121
>PRK14974 cell division protein FtsY; Provisional
Probab=97.05 E-value=0.0036 Score=67.89 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=30.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc-cC--hhhHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA-PW--NRTCDKL 492 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA-pS--NsAaD~l 492 (651)
+..+++.||||+||| +|++.+...+.. .+.+|++++ .+ ..|.+.+
T Consensus 140 ~~vi~~~G~~GvGKT-----TtiakLA~~l~~--~g~~V~li~~Dt~R~~a~eqL 187 (336)
T PRK14974 140 PVVIVFVGVNGTGKT-----TTIAKLAYYLKK--NGFSVVIAAGDTFRAGAIEQL 187 (336)
T ss_pred CeEEEEEcCCCCCHH-----HHHHHHHHHHHH--cCCeEEEecCCcCcHHHHHHH
Confidence 346789999999999 888877765544 366776554 33 3444444
No 122
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.04 E-value=0.0021 Score=77.35 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=45.7
Q ss_pred CCCHHHHH---HHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 423 KLDSDSNS---AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 423 ~LN~~Q~~---AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
...+.|.+ +|...+. .....+++.++||||| ....-.+++.. .+.+|+|.|||..-++++..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~--~~~~~~~eA~tGtGKT-----~ayllp~l~~~---~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 245 EERPKQESFAKLVGEDFH--DGPASFIEAQTGIGKT-----YGYLLPLLAQS---DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred ccCHHHHHHHHHHHHHHh--CCCcEEEECCCCCcHH-----HHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHH
Confidence 45788988 6666554 3567899999999999 44333333221 368999999999999999643
No 123
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.04 E-value=0.0027 Score=77.64 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHHhcc-CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~-~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..|=+.|.+++..++... ...-.+|-=..|.||| .+.+.++..+... ....++||++|.. ..++=.+.+.+.
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKT-----lQaIalL~~L~~~~~~~gp~LIVvP~S-lL~nW~~Ei~kw 241 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKT-----LQTISLLGYLHEYRGITGPHMVVAPKS-TLGNWMNEIRRF 241 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHH-----HHHHHHHHHHHHhcCCCCCEEEEeChH-HHHHHHHHHHHH
Confidence 468899999999887531 1223466778999999 7766666555442 2345799999964 455666666554
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
.+...++.+...... +..... ... ...++.||++|..++..... .+....|++||||||...-
T Consensus 242 ~p~l~v~~~~G~~~e--------R~~~~~--~~~------~~~~~dVvITSYe~l~~e~~-~L~k~~W~~VIvDEAHrIK 304 (1033)
T PLN03142 242 CPVLRAVKFHGNPEE--------RAHQRE--ELL------VAGKFDVCVTSFEMAIKEKT-ALKRFSWRYIIIDEAHRIK 304 (1033)
T ss_pred CCCCceEEEeCCHHH--------HHHHHH--HHh------cccCCCcceecHHHHHHHHH-HhccCCCCEEEEcCccccC
Confidence 444333333221110 000000 000 01357899999887654322 2344579999999998887
Q ss_pred hHhHHHHHhc-cccCCCeEEEEeCCCCC
Q 006311 580 EPETMIVLGN-LANENTRVIVTGAPHNS 606 (651)
Q Consensus 580 EpE~LIpL~~-la~~~~rvVLaGD~~QL 606 (651)
-+.+...-+. ......+++|.|=|-|-
T Consensus 305 N~~Sklskalr~L~a~~RLLLTGTPlqN 332 (1033)
T PLN03142 305 NENSLLSKTMRLFSTNYRLLITGTPLQN 332 (1033)
T ss_pred CHHHHHHHHHHHhhcCcEEEEecCCCCC
Confidence 7765443221 11345689999999983
No 124
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0016 Score=68.47 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=33.3
Q ss_pred CCCccEEEEecCCCCChHhHHHHHhcc---ccCCCeEEEEeC-CCCCCccccCh
Q 006311 564 AGHFSHIFLIDASSATEPETMIVLGNL---ANENTRVIVTGA-PHNSPSRVRSD 613 (651)
Q Consensus 564 ~~~F~~IiIDEAsQatEpE~LIpL~~l---a~~~~rvVLaGD-~~QL~PvV~S~ 613 (651)
.+.+.+||||||-.+++.. .-++... -..++.++|+=+ +..+.|.++|.
T Consensus 107 ~~~~kviiidead~mt~~A-~nallk~lEep~~~~~~il~~n~~~~il~tI~SR 159 (325)
T COG0470 107 EGGYKVVIIDEADKLTEDA-ANALLKTLEEPPKNTRFILITNDPSKILPTIRSR 159 (325)
T ss_pred CCCceEEEeCcHHHHhHHH-HHHHHHHhccCCCCeEEEEEcCChhhccchhhhc
Confidence 3568999999998888732 2222212 235678887776 78888877775
No 125
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0036 Score=71.46 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=32.6
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccc-c--CCCeEEEE-eCCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIVT-GAPHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la-~--~~~rvVLa-GD~~QL~PvV~S~ 613 (651)
+.|.++|||||.+.+.. +.-+|...- . .++.+||+ .|+..++|.|.|.
T Consensus 118 ~~~kV~iIDE~~~ls~~-a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR 169 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-SFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 (509)
T ss_pred CCcEEEEEEChHhcCHH-HHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH
Confidence 57899999999877653 333333222 2 35667765 6888999887765
No 126
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.94 E-value=0.0028 Score=69.20 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHhc----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCC-eEEEEccChhhHHHHHHHHHh
Q 006311 425 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS-RILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 425 N~~Q~~AV~~iL~~----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~-rILVcApSNsAaD~l~~rL~~ 498 (651)
-++|.+.+...+.. ..++..+|+|||||||| +++-.+..++-...++. -+-|-+........+..++..
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT-----~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKT-----TTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHH-----HHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 35566666666532 23456899999999999 55444444433322122 333434444334445555554
No 127
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.93 E-value=0.003 Score=75.76 Aligned_cols=135 Identities=10% Similarity=-0.039 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCc
Q 006311 424 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS 503 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~ 503 (651)
+.+.|.+++-.++... =.+.+.+.||||| .+.+-.+++-+.. +..++|+|||.--|...++-+.......
T Consensus 93 ~tp~qvQ~I~~i~l~~---gvIAeaqTGeGKT-----LAf~LP~l~~aL~--g~~v~IVTpTrELA~Qdae~m~~L~k~l 162 (970)
T PRK12899 93 MVPYDVQILGAIAMHK---GFITEMQTGEGKT-----LTAVMPLYLNALT--GKPVHLVTVNDYLAQRDCEWVGSVLRWL 162 (970)
T ss_pred CChHHHHHhhhhhcCC---CeEEEeCCCCChH-----HHHHHHHHHHHhh--cCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 7889999998887632 3789999999999 6655554433322 4468999999887777666554411000
Q ss_pred chhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcch-hhhhcC-CCC-------CCccEEEEec
Q 006311 504 EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSF-RLHNQG-ITA-------GHFSHIFLID 574 (651)
Q Consensus 504 ~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~-~l~~~~-~~~-------~~F~~IiIDE 574 (651)
-++++.. ....+..- ..+. .++.||++|..-.| .+...+ +.. ..|.++||||
T Consensus 163 -GLsV~~i---~GG~~~~e--------------q~~~-y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDE 223 (970)
T PRK12899 163 -GLTTGVL---VSGSPLEK--------------RKEI-YQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDE 223 (970)
T ss_pred -CCeEEEE---eCCCCHHH--------------HHHH-cCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEec
Confidence 0111110 00111000 0111 24789999988662 222222 211 2478999999
Q ss_pred CCCCChHhHHHHH
Q 006311 575 ASSATEPETMIVL 587 (651)
Q Consensus 575 AsQatEpE~LIpL 587 (651)
|-.+..-|+-.||
T Consensus 224 ADsmLiDEArTPL 236 (970)
T PRK12899 224 VDSILIDEARTPL 236 (970)
T ss_pred hhhhhhhccCCce
Confidence 9887765554444
No 128
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.90 E-value=0.002 Score=75.71 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=76.0
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIF 523 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~ 523 (651)
.++.|.||+||| .+.+++|.+.+.. +..+||..|..+-+..+.+++...+++..+..+++. +.+. .
T Consensus 163 ~i~~~~~GSGKT-----evyl~~i~~~l~~--Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~------l~~~-~ 228 (665)
T PRK14873 163 AVWQALPGEDWA-----RRLAAAAAATLRA--GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAG------LGPA-D 228 (665)
T ss_pred HHhhcCCCCcHH-----HHHHHHHHHHHHc--CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCC------CCHH-H
Confidence 345666799999 9999999999986 889999999999999999999987765556655442 2211 2
Q ss_pred HhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC
Q 006311 524 QVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 577 (651)
Q Consensus 524 ~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ 577 (651)
+|..|.. -.-.+++|||+|.+++.- |......|||||=+.
T Consensus 229 R~~~w~~--------~~~G~~~IViGtRSAvFa------P~~~LgLIIvdEEhd 268 (665)
T PRK14873 229 RYRRWLA--------VLRGQARVVVGTRSAVFA------PVEDLGLVAIWDDGD 268 (665)
T ss_pred HHHHHHH--------HhCCCCcEEEEcceeEEe------ccCCCCEEEEEcCCc
Confidence 2222211 012568999999998853 334567899998643
No 129
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.90 E-value=0.0056 Score=68.84 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=25.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.|++|+||+|+||| .|+.++...+.. .+.+|+.++
T Consensus 142 npl~L~G~~G~GKT------HLl~Ai~~~l~~-~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKT------HLMQAAVHALRE-SGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHH------HHHHHHHHHHHH-cCCCEEEee
Confidence 58999999999999 555555554443 367887665
No 130
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.0038 Score=70.64 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhccCC-CceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 427 DSNSAVHQILSFEGQ-SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 427 ~Q~~AV~~iL~~~~~-~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
.-.+.+..++...+. ..+|++|||||||| |+|.++...+..
T Consensus 21 ~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKT------TlA~~lA~~l~~ 62 (472)
T PRK14962 21 HVKKLIINALKKNSISHAYIFAGPRGTGKT------TVARILAKSLNC 62 (472)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhcc
Confidence 334445554443222 23799999999999 888887766543
No 131
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.0022 Score=74.99 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=30.3
Q ss_pred CCccEEEEecCCCCChHhHHHHHhc-cccCCCeEEEEe---CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGN-LANENTRVIVTG---APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~-la~~~~rvVLaG---D~~QL~PvV~S~ 613 (651)
|.+.++|||||-+++.. +.=.|.. +-.+..+++++. |+..|.|.|+|.
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR 169 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh
Confidence 56899999999877754 3334432 223233443333 778888888875
No 132
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.87 E-value=0.0093 Score=62.75 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++++.+.+...+.....++++|+|||||||| |++.++..-+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt------~~~~~l~~~l 62 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKT------TAALALAREL 62 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHH------HHHHHHHHHH
Confidence 4556666666665434557899999999999 5555554433
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.84 E-value=0.0064 Score=67.19 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=26.1
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.|.+|+|||||||| +.+..+..++.+..++.+|+..+
T Consensus 137 n~l~l~G~~G~GKT-----hL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKT-----HLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHH-----HHHHHHHHHHHHhCCCCcEEEEE
Confidence 57899999999999 55544444555544567777764
No 134
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.84 E-value=0.0063 Score=68.50 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
..|++|+|++||||| +.+..+..++.+..++.+|+..+.
T Consensus 141 ~npl~i~G~~G~GKT-----HLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 141 YNPLFIYGESGMGKT-----HLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred cCceEEECCCCCcHH-----HHHHHHHHHHHHhCCCCeEEEEEH
Confidence 368999999999999 555443344444457788876544
No 135
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0059 Score=71.19 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=33.2
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccc-c--CCCeEEEEe-CCCCCCccccChH
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIVTG-APHNSPSRVRSDI 614 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la-~--~~~rvVLaG-D~~QL~PvV~S~~ 614 (651)
+.|.++|||||-+++.. +.-.|.+.. . .+..+||+. |+.+|.|.|+|.-
T Consensus 123 gr~KViIIDEah~Ls~~-AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC 175 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNH-AFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 175 (700)
T ss_pred CCceEEEEEChHhcCHH-HHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH
Confidence 56899999999877754 334443322 2 345777665 6788999988763
No 136
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.81 E-value=0.005 Score=68.35 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=23.6
Q ss_pred HHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 432 VHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 432 V~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
+..++.....+.++|+|||||||| |++.++..
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKT------tLA~~ia~ 58 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKT------TLARIIAG 58 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHH------HHHHHHHH
Confidence 455554344567899999999999 77777755
No 137
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.80 E-value=0.002 Score=76.05 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=44.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.+..+|..|=||||| +.+.+-+.+.+. .++.+||+.++-.+-+..++.|+..
T Consensus 49 ~~V~vVRSpMGTGKT-----taLi~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~ 100 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKT-----TALIRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKK 100 (824)
T ss_pred CCeEEEECCCCCCcH-----HHHHHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhh
Confidence 568899999999999 777776666555 4789999999999999999999975
No 138
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.78 E-value=0.0073 Score=63.99 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHhcc-CCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~-~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.-.+++..+.+...+... .+.+++++|||||||| +++.++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT------~la~~l~~ 65 (316)
T PHA02544 23 CILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKT------TVAKALCN 65 (316)
T ss_pred hcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHH------HHHHHHHH
Confidence 345777777777776543 2456777999999999 66666644
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.75 E-value=0.0057 Score=74.65 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=46.0
Q ss_pred CCCHHHHH---HHHHHHhccCCCceEEeCcCCCCCCCCchhHH-HHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 423 KLDSDSNS---AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNV-VREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 423 ~LN~~Q~~---AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~T-lveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
.--+.|.+ +|...+. .....+|..|+||||| .. |+-++.... ..+.+|+|+|+|..--++|+.+
T Consensus 257 e~R~~Q~~m~~~v~~~l~--~~~~~~iEA~TGtGKT-----laYLlpa~~~a~--~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 257 EKREGQQEMMKEVYTALR--DSEHALIEAGTGTGKS-----LAYLLPAAYFAK--KKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred cCCHHHHHHHHHHHHHHh--cCCCEEEECCCCCchh-----HHHHHHHHHHhh--ccCCeEEEEcCCHHHHHHHHHh
Confidence 44678888 5555554 3567889999999999 33 333333222 2479999999999999998875
No 140
>PRK04195 replication factor C large subunit; Provisional
Probab=96.74 E-value=0.0096 Score=67.47 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHhc----cCCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 423 KLDSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
-.|+.+.+.+...+.. ....+++|+|||||||| |++.++..
T Consensus 17 vg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKT------tla~ala~ 61 (482)
T PRK04195 17 VGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKT------SLAHALAN 61 (482)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHH------HHHHHHHH
Confidence 4588888888877753 12568999999999999 77776654
No 141
>PF13173 AAA_14: AAA domain
Probab=96.73 E-value=0.0074 Score=55.80 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=24.0
Q ss_pred CccEEEEecCCCCChHhHHHHHhccccC--CCeEEEEeC
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLANE--NTRVIVTGA 602 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~~--~~rvVLaGD 602 (651)
...+|||||+..+.+... .+..+.+. +.++|++|-
T Consensus 61 ~~~~i~iDEiq~~~~~~~--~lk~l~d~~~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWED--ALKFLVDNGPNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhccHHH--HHHHHHHhccCceEEEEcc
Confidence 467999999988865444 44434433 469999995
No 142
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.012 Score=67.49 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=30.9
Q ss_pred CCccEEEEecCCCCChHhHHHHHhc-ccc--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGN-LAN--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~-la~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||..++.. +.-.|.. +-. ..+.+||+. |+..+.+.|.|.
T Consensus 118 ~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR 169 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 (527)
T ss_pred CCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH
Confidence 46889999999877753 3222222 222 346778777 777788776654
No 143
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.65 E-value=0.0018 Score=80.20 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=47.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC---CCCeEEEEccChhhHHHHHHHHHhh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---PKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~---~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
.+..+|..-+||||| +||+..++.++... ...+|||+|+||+|+.+|.+|+.+.
T Consensus 9 ~G~~lieAsAGtGKT-----~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~r 65 (1087)
T TIGR00609 9 NGTFLIEASAGTGKT-----FTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGR 65 (1087)
T ss_pred CCCEEEEECCCCCHH-----HHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHHH
Confidence 468899999999999 99999998888742 4479999999999999999999873
No 144
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.61 E-value=0.0079 Score=71.43 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=24.4
Q ss_pred HHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 431 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 431 AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
.+..++...+.+..+|+|||||||| |++.++...
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKT------TLA~aIA~~ 75 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKT------TLARIIANH 75 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHH------HHHHHHHHH
Confidence 3444444444568899999999999 777777643
No 145
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.57 E-value=0.0014 Score=58.10 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=30.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLME 494 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~ 494 (651)
...++|.|||||||| |++..+...+.. ....++.++.+.........
T Consensus 2 ~~~~~l~G~~G~GKT------tl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 48 (148)
T smart00382 2 GEVILIVGPPGSGKT------TLARALARELGP-PGGGVIYIDGEDILEEVLDQ 48 (148)
T ss_pred CCEEEEECCCCCcHH------HHHHHHHhccCC-CCCCEEEECCEEccccCHHH
Confidence 356899999999999 555555544443 22357777776655544443
No 146
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.57 E-value=0.00088 Score=66.32 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=29.1
Q ss_pred EEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 445 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 445 LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+|.|+.|.||| ..+..++.+++.. ...+|+||||+-.++..+.+.+..
T Consensus 1 VltA~RGRGKS-----a~lGl~~a~l~~~-~~~~I~vtAP~~~~~~~lf~~~~~ 48 (177)
T PF05127_consen 1 VLTADRGRGKS-----AALGLAAAALIQK-GKIRILVTAPSPENVQTLFEFAEK 48 (177)
T ss_dssp -EEE-TTSSHH-----HHHHHCCCCSSS------EEEE-SS--S-HHHHHCC--
T ss_pred CccCCCCCCHH-----HHHHHHHHHHHHh-cCceEEEecCCHHHHHHHHHHHHh
Confidence 58899999999 7777777666654 346999999999999888876654
No 147
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.54 E-value=0.0056 Score=63.56 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHhc-----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 425 DSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
++.|+.|+..+... .+...+++.|+|||||| +.++.+..++.+. +.+|++++
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKT-----hLa~aia~~l~~~--g~~v~~it 134 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKN-----HLAAAICNELLLR--GKSVLIIT 134 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEE
Confidence 56788787766542 12358999999999999 6555555555553 67887773
No 148
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.003 Score=75.72 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=29.8
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc---CCCeEEEE-eCCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVT-GAPHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~---~~~rvVLa-GD~~QL~PvV~S~ 613 (651)
+.+.++|||||.+++. ++.-.|...-. .+.++||+ .|+..|.|.|.|.
T Consensus 118 gk~KViIIDEAh~LT~-eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR 169 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR-SSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 (944)
T ss_pred CCcEEEEEechHhcCH-HHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh
Confidence 5789999999977664 44444332222 23455544 4667788777764
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.52 E-value=0.007 Score=71.74 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEEEccChhhHHHHHHHHHh
Q 006311 424 LDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.=+.|++.+..+... ......++.+|.||||| ..+.-+.+...... ...+|..|+.||+-.+.+++.|.+
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKT-----lslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKT-----ISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCcc-----HHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 357899999988865 44678999999999999 55544444444422 236999999999999999998876
No 150
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.51 E-value=0.011 Score=57.74 Aligned_cols=126 Identities=16% Similarity=0.142 Sum_probs=68.2
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC----hhhHHHHHHHHHhhCCCcchhhhccccccccC
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW----NRTCDKLMECLMKDIPASEMFRANAAFREADG 517 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS----NsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~ 517 (651)
+...|++++|+||| +......++.+.. +.||+++-+- .+.-..+++++ ++.+++|.+........
T Consensus 3 G~i~vy~g~G~Gkt-----~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~~ 71 (159)
T cd00561 3 GLIQVYTGNGKGKT-----TAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTTE 71 (159)
T ss_pred CEEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCCC
Confidence 56789999999999 5555555555554 8899984332 23333333333 45566665543221110
Q ss_pred CcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCC-----ChHhHHHHHhcccc
Q 006311 518 VSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA-----TEPETMIVLGNLAN 592 (651)
Q Consensus 518 v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQa-----tEpE~LIpL~~la~ 592 (651)
-.++-...+ ...+ . .+ ..-+..+.+|.+|+||..-| .+.+-++-+..-..
T Consensus 72 ~~~~~~~~a---~~~~--------~----------~a----~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp 126 (159)
T cd00561 72 NDEEDIAAA---AEGW--------A----------FA----KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP 126 (159)
T ss_pred ChHHHHHHH---HHHH--------H----------HH----HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC
Confidence 011100000 0000 0 00 11123457999999999876 34455555554445
Q ss_pred CCCeEEEEeCC
Q 006311 593 ENTRVIVTGAP 603 (651)
Q Consensus 593 ~~~rvVLaGD~ 603 (651)
.+..+||.|-.
T Consensus 127 ~~~evIlTGr~ 137 (159)
T cd00561 127 EDLELVLTGRN 137 (159)
T ss_pred CCCEEEEECCC
Confidence 66799999964
No 151
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.019 Score=65.65 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=28.6
Q ss_pred CCccEEEEecCCCCChHhHHHHH-hcccc--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVL-GNLAN--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL-~~la~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.+||||||...+... +-.| ..+.. ..+.+|++. ++..+.|.+.|.
T Consensus 115 ~~~kVVIIDEad~ls~~a-~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSA-FNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred CCCeEEEEECccccCHHH-HHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 357899999997776533 3333 22222 234555554 567788877653
No 152
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.49 E-value=0.004 Score=64.97 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
++..++.++.++.. ....|.+|.|||||||| +++.++.+
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT------~lA~~la~ 43 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKT------TLAMHVAR 43 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHH------HHHHHHHH
Confidence 45555556655543 23568999999999999 78887765
No 153
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=96.48 E-value=0.017 Score=68.49 Aligned_cols=147 Identities=9% Similarity=0.033 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC-
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP- 501 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~- 501 (651)
.+-+.|.+++..++...+ .+++-+.||||| .|.+-.++. ....+..|+|+||+..-|...++.+.....
T Consensus 68 glrpydVQlig~l~l~~G---~Iaem~TGeGKT-----Lta~Lpa~l--~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQG---NIAEMKTGEGKT-----LTATMPLYL--NALTGKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred CCCccHHHHHHHHHhcCC---ceeEecCCcchH-----HHHHHHHHH--HhhcCCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 345556666665554222 489999999999 665544332 223467899999999888777776644110
Q ss_pred -CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchh--hhh------cCCCCCCccEEEE
Q 006311 502 -ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHN------QGITAGHFSHIFL 572 (651)
Q Consensus 502 -~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~--l~~------~~~~~~~F~~IiI 572 (651)
+..+. +...........++ .+.....+.|+++|....+. +.. .+.....+.++||
T Consensus 138 LGLsv~-~~~~~s~~~~~~~~---------------~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IV 201 (762)
T TIGR03714 138 LGLTVS-LGVVDDPDEEYDAN---------------EKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIV 201 (762)
T ss_pred cCCcEE-EEECCCCccccCHH---------------HHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEE
Confidence 11100 00000000001111 12233568999999997753 211 1112235889999
Q ss_pred ecCCCCChHhHHHHHhccccCCCeEEEEeCCCC
Q 006311 573 IDASSATEPETMIVLGNLANENTRVIVTGAPHN 605 (651)
Q Consensus 573 DEAsQatEpE~LIpL~~la~~~~rvVLaGD~~Q 605 (651)
|||-.+..-| ..+.+|+.|.+..
T Consensus 202 DEaDsILiDe----------artpliisg~~~~ 224 (762)
T TIGR03714 202 DEVDSVLLDS----------AQTPLVISGAPRV 224 (762)
T ss_pred ecHhhHhhcc----------CcCCeeeeCCCcc
Confidence 9996544333 3356888887653
No 154
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.0076 Score=69.38 Aligned_cols=61 Identities=13% Similarity=0.069 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhH
Q 006311 422 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTC 489 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAa 489 (651)
..||++|+.....++.. .......-+|+.||||| ++-..+.+.++.. +..++.+|.|..|+
T Consensus 116 ~~l~~eqk~v~d~~~~~v~~~~g~~ff~g~~gtgKt------~l~~t~~~~~~~~-g~~~~~v~~s~ia~ 178 (540)
T KOG0987|consen 116 KKLTPEQKRVYDAILEAVENNLGGVFFYGFGGTGKT------YLLKTLIAALRSR-GKIVLNVASSGIAA 178 (540)
T ss_pred hhcCHHHHHHHHHHHHHHhccccceeeeccCCccce------eeHHHHHHHHhcC-CceEEEeeecchhh
Confidence 58999999888855532 12223223999999999 4444455556654 78888888888876
No 155
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.47 E-value=0.017 Score=68.43 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccc-c--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la-~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
++|.++||||+..++.. +.-.|.+.. . .++++||+. |+.+++|.|.|.
T Consensus 118 gr~KVIIIDEah~LT~~-A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH-AFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred CCceEEEEeChhhCCHH-HHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 46899999999877753 333332222 2 355666644 667788887775
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.46 E-value=0.022 Score=66.28 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=27.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
..|++|+|++||||| +.+..+..++.+..++.+|+..+.
T Consensus 314 ~NpL~LyG~sGsGKT-----HLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 314 YNPLFIYGESGLGKT-----HLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCcEEEECCCCCCHH-----HHHHHHHHHHHHhCCCCeEEEeeH
Confidence 357899999999999 665555555554456778877653
No 157
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.0085 Score=65.45 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=28.7
Q ss_pred CCccEEEEecCCCCChH--hHHHHHhccccCCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEP--ETMIVLGNLANENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEp--E~LIpL~~la~~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||..++.. ++|+-...-.....++||++ |..++.+.+.|.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR 169 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR 169 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh
Confidence 35789999999877753 23332221112345677665 556777766543
No 158
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.016 Score=65.94 Aligned_cols=48 Identities=10% Similarity=0.154 Sum_probs=29.0
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccc-c--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la-~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||...+. ++.=.|...- . +.+.+||+- +...+++.|.|.
T Consensus 115 ~~~KVvIIDEah~Ls~-~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR 166 (491)
T PRK14964 115 SKFKVYIIDEVHMLSN-SAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR 166 (491)
T ss_pred CCceEEEEeChHhCCH-HHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh
Confidence 3588999999976655 3333333222 2 345777766 445677766653
No 159
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.0069 Score=70.21 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhccC-CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 426 SDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 426 ~~Q~~AV~~iL~~~~-~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
+.-.+.+..++...+ +..+|++|||||||| |+|.++...+.+
T Consensus 22 e~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKT------TlA~~lAk~L~C 64 (605)
T PRK05896 22 ELIKKILVNAILNNKLTHAYIFSGPRGIGKT------SIAKIFAKAINC 64 (605)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHH------HHHHHHHHHhcC
Confidence 334444444443222 345899999999999 777777666654
No 160
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.41 E-value=0.03 Score=65.52 Aligned_cols=158 Identities=11% Similarity=0.026 Sum_probs=86.3
Q ss_pred HHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhc
Q 006311 430 SAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRAN 509 (651)
Q Consensus 430 ~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~ 509 (651)
+-|..++..-+....++..|=|.||| .++.-++..++.. .+.+|+++||.-..+..+.+++...+.....
T Consensus 176 ~~id~~~~~fkq~~tV~taPRqrGKS-----~iVgi~l~~La~f-~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~---- 245 (752)
T PHA03333 176 REIDRIFDEYGKCYTAATVPRRCGKT-----TIMAIILAAMISF-LEIDIVVQAQRKTMCLTLYNRVETVVHAYQH---- 245 (752)
T ss_pred HHHHHHHHHHhhcceEEEeccCCCcH-----HHHHHHHHHHHHh-cCCeEEEECCChhhHHHHHHHHHHHHHHhcc----
Confidence 33444443223678889999999999 6665555555442 4789999999999999999888763321110
Q ss_pred cccccccCCcHHHHHh-hhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH--hHHHH
Q 006311 510 AAFREADGVSDEIFQV-SLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP--ETMIV 586 (651)
Q Consensus 510 a~~R~~~~v~~~l~~y-~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp--E~LIp 586 (651)
.++..... .+... ...+.-.|..|........+|...+.+..+ .+...||.+|||||+-...+ ++++|
T Consensus 246 --~~~fp~~~-~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~~s------~RG~~~DLLIVDEAAfI~~~~l~aIlP 316 (752)
T PHA03333 246 --KPWFPEEF-KIVTLKGTDENLEYISDPAAKEGKTTAHFLASSPNA------ARGQNPDLVIVDEAAFVNPGALLSVLP 316 (752)
T ss_pred --ccccCCCc-eEEEeeCCeeEEEEecCcccccCcceeEEecccCCC------cCCCCCCEEEEECcccCCHHHHHHHHH
Confidence 00100000 00000 000111233332222222455554333211 22235899999999877654 44556
Q ss_pred HhccccCCCeEEEEeCCCCCCc
Q 006311 587 LGNLANENTRVIVTGAPHNSPS 608 (651)
Q Consensus 587 L~~la~~~~rvVLaGD~~QL~P 608 (651)
+. ...+++++++.-|..-..
T Consensus 317 ~l--~~~~~k~IiISS~~~~~s 336 (752)
T PHA03333 317 LM--AVKGTKQIHISSPVDADS 336 (752)
T ss_pred HH--ccCCCceEEEeCCCCcch
Confidence 54 234678888776665443
No 161
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.0049 Score=71.92 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccc-c--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la-~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||...+.. +.-.|.... . .++.+||+. |+..+++.+.|.
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSR 168 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHh
Confidence 45889999999877643 333333222 2 345788766 667777666543
No 162
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.024 Score=65.52 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=30.1
Q ss_pred CCccEEEEecCCCCChHhHHHHHhc-ccc--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGN-LAN--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~-la~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||.++++.. .-+|.. +-. .++.+||+. ++..+.|.+.|.
T Consensus 118 ~~~kViIIDE~~~Lt~~a-~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR 169 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGA-FNALLKTLEEPPAHVIFILATTEPHKIPATILSR 169 (559)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH
Confidence 468899999998887643 333332 222 234555544 688888887654
No 163
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.0056 Score=67.79 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=32.0
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc--CCCe-EEEEeCCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN--ENTR-VIVTGAPHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~r-vVLaGD~~QL~PvV~S~ 613 (651)
+++.++|||||-.+++...-.-|..+-. .++. |+.+.++..|.|.|+|.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSR 167 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSR 167 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhh
Confidence 4688999999988877654222222222 2343 44567888899988864
No 164
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.39 E-value=0.0086 Score=70.31 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=31.1
Q ss_pred CCccEEEEecCCCCChHhHHHHHhc-cc--cCCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGN-LA--NENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~-la--~~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.+||||||...+.. +.-.|.. +- ...+.+||+. |+..+.+.+.|.
T Consensus 118 gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSR 169 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 (709)
T ss_pred CCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHH
Confidence 35789999999877653 2222222 22 2356777775 888888887764
No 165
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.014 Score=67.77 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=29.9
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcc-cc--CCCeEEE-EeCCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNL-AN--ENTRVIV-TGAPHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~l-a~--~~~rvVL-aGD~~QL~PvV~S~ 613 (651)
+.+.++|||||...+.. +.=.|... -. .+..+|| ++++..|.|.|.|.
T Consensus 117 ~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SR 168 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168 (584)
T ss_pred CCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHh
Confidence 46889999999877754 33333222 22 2345554 46777888877765
No 166
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.028 Score=61.15 Aligned_cols=43 Identities=9% Similarity=0.007 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHhcc-CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 424 LDSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~-~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
-++...+.+...+... -+..++++||||+||| +++.++...+.
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt------~~a~~la~~l~ 64 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKT------TCARILARKIN 64 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 3555566666666432 2346899999999999 66666655443
No 167
>COG4889 Predicted helicase [General function prediction only]
Probab=96.37 E-value=0.0094 Score=70.31 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=78.0
Q ss_pred CCCCCHHHHHHHHHHHhc-cCC-CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 421 NYKLDSDSNSAVHQILSF-EGQ-SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~-~~~-~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..++-+.|+.|+..++.. ..+ +=-|| -.+||||| +|-..+.-.+.+ .|||..+||-+-.-+-++....
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLI-MAcGTGKT-----fTsLkisEala~----~~iL~LvPSIsLLsQTlrew~~ 228 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLI-MACGTGKT-----FTSLKISEALAA----ARILFLVPSISLLSQTLREWTA 228 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEE-EecCCCcc-----chHHHHHHHHhh----hheEeecchHHHHHHHHHHHhh
Confidence 357899999999999875 212 22234 47899999 886654443333 7999999998766555555443
Q ss_pred hCCCcchhhhccc------cccccCCcHHHHHhhhcc--ccccC-CChhhhhcccceEeeehhcchhhhhc-CCCCCCcc
Q 006311 499 DIPASEMFRANAA------FREADGVSDEIFQVSLVE--RECFS-CPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFS 568 (651)
Q Consensus 499 ~l~~~~i~Rv~a~------~R~~~~v~~~l~~y~~~~--~~~f~-~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~ 568 (651)
...--+|-.+- +|..+++...-.++-... ..... ....+.-..--||++|..++-..... ....+.||
T Consensus 229 --~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fD 306 (1518)
T COG4889 229 --QKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFD 306 (1518)
T ss_pred --ccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCcc
Confidence 11222332221 111111110000000000 00000 00001113446899999887654421 12234699
Q ss_pred EEEEecCCCCC
Q 006311 569 HIFLIDASSAT 579 (651)
Q Consensus 569 ~IiIDEAsQat 579 (651)
.||.|||...+
T Consensus 307 liicDEAHRTt 317 (1518)
T COG4889 307 LIICDEAHRTT 317 (1518)
T ss_pred EEEecchhccc
Confidence 99999997765
No 168
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.35 E-value=0.014 Score=69.08 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=45.3
Q ss_pred CCHHHHH---HHHHHHhcc---CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 424 LDSDSNS---AVHQILSFE---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 424 LN~~Q~~---AV~~iL~~~---~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
--+.|.+ +|...++.. .....+|..|.||||| .++ |+-++....+ .+++|+|.|.|..-=++|+.+
T Consensus 26 ~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKT---laY-LlPai~~A~~--~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 26 PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKT---LSY-LLAGIPIARA--EKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchh---HHH-HHHHHHHHHH--cCCeEEEEcCCHHHHHHHHhh
Confidence 3567887 455555421 1467899999999999 222 3344443333 388999999999998888765
No 169
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.33 E-value=0.0038 Score=77.73 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=46.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
...++|.+++||||| .+|+..++.++.. .+..+||+.|+||.||.++.+|+.+.
T Consensus 10 ~~~~~~~a~agsgkt-----~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~ 64 (1141)
T TIGR02784 10 KTSAWVSANAGSGKT-----HVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDR 64 (1141)
T ss_pred CCCEEEEEECCCCHH-----HHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHH
Confidence 346789999999999 9999999888754 34579999999999999999999873
No 170
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=96.32 E-value=0.02 Score=68.98 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH-HhCCCCeEEEEccChhhHHHHHHHHHhhCCCcch
Q 006311 427 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RRSPKSRILICAPWNRTCDKLMECLMKDIPASEM 505 (651)
Q Consensus 427 ~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll-~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i 505 (651)
.+++++..+++ .+..++|.|-+|+||| +-+-..|+.-. ...+..+|+++-|-..||=.+++|+.+...+ .+
T Consensus 176 ~~r~~Il~~i~--~~qVvvIsGeTGcGKT-----TQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~-~~ 247 (924)
T KOG0920|consen 176 KMRDTILDAIE--ENQVVVISGETGCGKT-----TQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGE-SL 247 (924)
T ss_pred HHHHHHHHHHH--hCceEEEeCCCCCCch-----hhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhcc-cc
Confidence 46666666665 2678999999999999 88888887754 3346678999999999999999999873211 11
Q ss_pred hh-hccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCCh-HhH
Q 006311 506 FR-ANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE-PET 583 (651)
Q Consensus 506 ~R-v~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatE-pE~ 583 (651)
-| ++..-|- +.. .-.+.++..||....-+....+-.....+||||||.---.. .+.
T Consensus 248 g~~VGYqvrl--------------~~~--------~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~Df 305 (924)
T KOG0920|consen 248 GEEVGYQVRL--------------ESK--------RSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDF 305 (924)
T ss_pred CCeeeEEEee--------------ecc--------cCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCccc
Confidence 11 1111010 000 11336777887765544332233344689999999854332 333
Q ss_pred H-HHHhccc--cCCCeEEEE
Q 006311 584 M-IVLGNLA--NENTRVIVT 600 (651)
Q Consensus 584 L-IpL~~la--~~~~rvVLa 600 (651)
| +-+..+. .++=+|||-
T Consensus 306 lLi~lk~lL~~~p~LkvILM 325 (924)
T KOG0920|consen 306 LLILLKDLLPRNPDLKVILM 325 (924)
T ss_pred HHHHHHHHhhhCCCceEEEe
Confidence 2 2222222 244567764
No 171
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.29 E-value=0.012 Score=66.91 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH------hCCCCeEEEEccChhhHHHHHHHH
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR------RSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~------~~~~~rILVcApSNsAaD~l~~rL 496 (651)
...+-|.++.-.++.+ .=.+...-.|||||+ -.+.=+|..+.. ...+.++||.+||...|.++.+-.
T Consensus 113 ~PtpIQaq~wp~~l~G---rD~v~iA~TGSGKTL----ay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~ 185 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALSG---RDLVGIARTGSGKTL----AYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEA 185 (519)
T ss_pred CCchhhhcccceeccC---CceEEEeccCCcchh----hhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHH
Confidence 5567788888777763 345666789999992 223333333333 123568999999999999998887
Q ss_pred HhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcc-cceEeeehhcchhhhhcC-CCCCCccEEEEec
Q 006311 497 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQ-YKVISSTFVSSFRLHNQG-ITAGHFSHIFLID 574 (651)
Q Consensus 497 ~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~-~rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDE 574 (651)
.+...... ++..|.+. +.-.-|+...|.+ +.|+|+|..-.-.+...+ ++-..++|+++||
T Consensus 186 ~~~~~~~~-----------------~~~~cvyG-G~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 186 REFGKSLR-----------------LRSTCVYG-GAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred HHHcCCCC-----------------ccEEEEeC-CCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 76322211 11223332 2223345555554 899999987555444332 3445699999999
Q ss_pred CCCCC
Q 006311 575 ASSAT 579 (651)
Q Consensus 575 AsQat 579 (651)
|-++.
T Consensus 248 ADrMl 252 (519)
T KOG0331|consen 248 ADRML 252 (519)
T ss_pred HHhhh
Confidence 98875
No 172
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.29 E-value=0.0055 Score=59.36 Aligned_cols=46 Identities=15% Similarity=-0.004 Sum_probs=33.2
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
++|.|||||||| ......+.+.++. +.++++.+...+ ++.+.+++.
T Consensus 2 ~li~G~~G~GKT-----~l~~~~~~~~~~~--g~~v~~~s~e~~-~~~~~~~~~ 47 (187)
T cd01124 2 TLLSGGPGTGKT-----TFALQFLYAGLAR--GEPGLYVTLEES-PEELIENAE 47 (187)
T ss_pred EEEEcCCCCCHH-----HHHHHHHHHHHHC--CCcEEEEECCCC-HHHHHHHHH
Confidence 689999999999 6666666666654 788888877554 445555554
No 173
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.04 Score=61.06 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=30.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEE-EccC--hhhHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILI-CAPW--NRTCDK 491 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILV-cApS--NsAaD~ 491 (651)
+..+++.||+|+||| +|++.+..++... ..+.+|.+ ++-+ ..|.+.
T Consensus 174 ~~vi~lvGptGvGKT-----TT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ 224 (388)
T PRK12723 174 KRVFILVGPTGVGKT-----TTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ 224 (388)
T ss_pred CeEEEEECCCCCCHH-----HHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH
Confidence 456889999999999 9998887665432 13556654 4445 334444
No 174
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.27 E-value=0.0088 Score=58.74 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCccEEEEecCCCCChHh--HHHHHhccccCCCeEEE-EeCCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPE--TMIVLGNLANENTRVIV-TGAPHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE--~LIpL~~la~~~~rvVL-aGD~~QL~PvV~S~ 613 (651)
+.+.+||||||...++.. .|+....-..+++.+|| +.+...|.|.+.|.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr 146 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR 146 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh
Confidence 357899999998777643 23333222223456665 44667777766553
No 175
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.028 Score=65.78 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=25.5
Q ss_pred HHHHHHHHhccC-CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 429 NSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 429 ~~AV~~iL~~~~-~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
.+.+..++...+ .+-+|++|||||||| |++.++.+.+.+
T Consensus 25 ~~~L~~~l~~~rl~~a~Lf~Gp~G~GKt------tlA~~lAk~L~c 64 (620)
T PRK14948 25 ATTLKNALISNRIAPAYLFTGPRGTGKT------SSARILAKSLNC 64 (620)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCChH------HHHHHHHHHhcC
Confidence 333444443222 356899999999999 777777665554
No 176
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0025 Score=68.11 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=22.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
++..|++|||||||| +++.|..|-+.
T Consensus 177 NRliLlhGPPGTGKT------SLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKT------SLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChh------HHHHHHHHhhe
Confidence 578999999999999 89999888654
No 177
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.22 E-value=0.011 Score=60.61 Aligned_cols=54 Identities=9% Similarity=-0.124 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 424 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
-|.....++..+......++.+|+|||||||| +++.++...+.. .+.+++..+.
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKT------hLl~a~~~~~~~-~~~~v~y~~~ 81 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRS------HLLHAACAELSQ-RGRAVGYVPL 81 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHH------HHHHHHHHHHHh-CCCeEEEEEH
Confidence 67777777777654334568999999999999 555555443333 3667776655
No 178
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.22 E-value=0.0034 Score=58.27 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.7
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+++|.|||||||| ++++.+.+.+
T Consensus 1 ~vlL~G~~G~GKt------~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKT------TLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHH------HHHHHHHHHH
T ss_pred CEEEECCCCCCHH------HHHHHHHHHh
Confidence 5799999999999 7777777766
No 179
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.20 E-value=0.019 Score=67.94 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=30.0
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccc-c--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la-~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||..++. ++.-+|...- . ..+.+||+. ++..|+|.+.|.
T Consensus 117 g~~KV~IIDEa~~LT~-~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR 168 (725)
T PRK07133 117 SKYKIYIIDEVHMLSK-SAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR 168 (725)
T ss_pred CCCEEEEEEChhhCCH-HHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh
Confidence 4678999999977664 4444443222 2 245666665 678888876654
No 180
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.19 E-value=0.01 Score=71.13 Aligned_cols=140 Identities=10% Similarity=0.111 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--------CCCCeEEEEccChhhHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--------SPKSRILICAPWNRTCDKLM 493 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--------~~~~rILVcApSNsAaD~l~ 493 (651)
..||.-|-.+...+... +.-.||..|.|+||| ...--+|++.++. ..+.+|...||+.+-|-++.
T Consensus 109 ~~fN~iQS~vFp~aY~S--neNMLIcAPTGsGKT-----~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 109 EEFNRIQSEVFPVAYKS--NENMLICAPTGSGKT-----VLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred HHHHHHHHHhhhhhhcC--CCCEEEECCCCCCch-----HHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHH
Confidence 57899999999988763 567899999999999 4433446666653 24679999999999999999
Q ss_pred HHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCC----CCCCccE
Q 006311 494 ECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGI----TAGHFSH 569 (651)
Q Consensus 494 ~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~----~~~~F~~ 569 (651)
+...+.+.... -.-|++ . ++. ...+.++..++|||||..-.--...... -.+....
T Consensus 182 ~~~~kkl~~~g-----i~v~EL---T----------GD~--ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~L 241 (1230)
T KOG0952|consen 182 DKFSKKLAPLG-----ISVREL---T----------GDT--QLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRL 241 (1230)
T ss_pred HHHhhhccccc-----ceEEEe---c----------Ccc--hhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheee
Confidence 99887443211 111211 0 110 0123457888999998752211100000 0123568
Q ss_pred EEEecCCCCChH-----hHHHHHh
Q 006311 570 IFLIDASSATEP-----ETMIVLG 588 (651)
Q Consensus 570 IiIDEAsQatEp-----E~LIpL~ 588 (651)
|||||....-|+ |++++-.
T Consensus 242 viIDEVHlLhd~RGpvlEtiVaRt 265 (1230)
T KOG0952|consen 242 VIIDEVHLLHDDRGPVLETIVART 265 (1230)
T ss_pred EEeeeehhhcCcccchHHHHHHHH
Confidence 999998665543 5555543
No 181
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.16 E-value=0.0025 Score=57.65 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.1
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+|+|||||||| ++++++.+.+
T Consensus 1 ill~G~~G~GKT------~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKT------TLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHH------HHHHHHHHHT
T ss_pred CEEECcCCCCee------HHHHHHHhhc
Confidence 489999999999 7777776654
No 182
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.15 E-value=0.0051 Score=61.72 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=27.9
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeE-EEEccCh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI-LICAPWN 486 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rI-LVcApSN 486 (651)
.+++.||+|+||| +|++.+..++... +.+| |||+.+.
T Consensus 3 vi~lvGptGvGKT-----Tt~aKLAa~~~~~--~~~v~lis~D~~ 40 (196)
T PF00448_consen 3 VIALVGPTGVGKT-----TTIAKLAARLKLK--GKKVALISADTY 40 (196)
T ss_dssp EEEEEESTTSSHH-----HHHHHHHHHHHHT--T--EEEEEESTS
T ss_pred EEEEECCCCCchH-----hHHHHHHHHHhhc--cccceeecCCCC
Confidence 5789999999999 9999998877765 5555 5566555
No 183
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.029 Score=65.18 Aligned_cols=48 Identities=13% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcc-cc--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNL-AN--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~l-a~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||...+.- +.=.|... -. .++.+||+- ++..|++.|.|.
T Consensus 118 ~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR 169 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 (576)
T ss_pred CCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh
Confidence 45889999999777753 22233222 22 356777665 567788877654
No 184
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.01 Score=68.40 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHHHhccC-CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 430 SAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 430 ~AV~~iL~~~~-~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
+.+...+...+ +..+|++|||||||| |++.++...+.+
T Consensus 26 ~~L~~~i~~~rl~ha~Lf~Gp~GvGKT------TlAr~lAk~L~c 64 (546)
T PRK14957 26 NSLVHALETQKVHHAYLFTGTRGVGKT------TLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhCC
Confidence 33444443222 334889999999999 777777665543
No 185
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.017 Score=67.51 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=31.9
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccc-c--CCCeEEEE-eCCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIVT-GAPHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la-~--~~~rvVLa-GD~~QL~PvV~S~ 613 (651)
+.|.++|||||-+++.. +.-.|.... . ..+.+||+ +|+..+.+.+.|.
T Consensus 123 g~~KV~IIDEvh~Ls~~-a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSR 174 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNT-AFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSR 174 (618)
T ss_pred CCceEEEEEChhhCCHH-HHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHh
Confidence 46899999999877754 343443222 2 34567765 5889988877664
No 186
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.13 E-value=0.015 Score=59.27 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHhccC--CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 423 KLDSDSNSAVHQILSFEG--QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~--~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.-|..=..|+..+....+ ..|++|+||+|+||| +.+.++..++.+..++.+|+...
T Consensus 14 ~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKT-----HLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 14 ESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKT-----HLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHH-----HHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHH-----HHHHHHHHHHHhccccccceeec
Confidence 346666667776665432 357899999999999 76666666666666788887664
No 187
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0051 Score=66.66 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHH
Q 006311 425 DSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDK 491 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~ 491 (651)
=++|.+-++.++.. ..+.=+|++|||||||| .+|.|+.. ..++. +-..+.-.
T Consensus 156 L~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKT------LLAkAVA~----~T~At-----FIrvvgSE 220 (406)
T COG1222 156 LDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKT------LLAKAVAN----QTDAT-----FIRVVGSE 220 (406)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHH------HHHHHHHh----ccCce-----EEEeccHH
Confidence 35666666655532 12334899999999999 77777653 12322 23334456
Q ss_pred HHHHHHhhCCCcchhh
Q 006311 492 LMECLMKDIPASEMFR 507 (651)
Q Consensus 492 l~~rL~~~l~~~~i~R 507 (651)
+.+++.- .+.+++|
T Consensus 221 lVqKYiG--EGaRlVR 234 (406)
T COG1222 221 LVQKYIG--EGARLVR 234 (406)
T ss_pred HHHHHhc--cchHHHH
Confidence 7777654 3445554
No 188
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0043 Score=68.88 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=43.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHh----c------cC---CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 417 CPYSNYKLDSDSNSAVHQILS----F------EG---QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 417 ~~~~~~~LN~~Q~~AV~~iL~----~------~~---~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..|....+++.=++-|..=|. + .+ .+=||++|||||||| ++++|+.-.+.- +--.|=.|
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKS------S~IaAmAn~L~y--dIydLeLt 269 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKS------SFIAAMANYLNY--DIYDLELT 269 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHH------HHHHHHHhhcCC--ceEEeeec
Confidence 344445566665555543332 1 11 356999999999999 666666555543 22223333
Q ss_pred cChhhHHHHHHHHHhhCCCcchhh
Q 006311 484 PWNRTCDKLMECLMKDIPASEMFR 507 (651)
Q Consensus 484 pSNsAaD~l~~rL~~~l~~~~i~R 507 (651)
--+.-.| +++|+-..++..|+=
T Consensus 270 ~v~~n~d--Lr~LL~~t~~kSIiv 291 (457)
T KOG0743|consen 270 EVKLDSD--LRHLLLATPNKSILL 291 (457)
T ss_pred cccCcHH--HHHHHHhCCCCcEEE
Confidence 3333334 666665444444443
No 189
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.0069 Score=63.63 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
+-+.-|+.|+..|+.+ .-++.|.-.||||| .|..--++|.+... +..++||.+||..-|-++.+-+.. +.
T Consensus 49 kPS~IQqrAi~~IlkG---rdViaQaqSGTGKT-----a~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~a-lg 119 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILKG---RDVIAQAQSGTGKT-----ATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILA-LG 119 (400)
T ss_pred CchHHHhhhhhhhhcc---cceEEEecCCCCce-----EEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHH-hc
Confidence 4466799999999983 46789999999999 77666677766543 347899999999988887766654 11
Q ss_pred Ccchhhhcccccc-ccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCCCCCccEEEEecCCCCC
Q 006311 502 ASEMFRANAAFRE-ADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~~i~Rv~a~~R~-~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~~IiIDEAsQat 579 (651)
+ ..-+.....- =.++.++++.. + ....||.+|......+... .+.-.....+++|||--+.
T Consensus 120 ~--~mnvq~hacigg~n~gedikkl--------------d-~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL 182 (400)
T KOG0328|consen 120 D--YMNVQCHACIGGKNLGEDIKKL--------------D-YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEML 182 (400)
T ss_pred c--cccceEEEEecCCccchhhhhh--------------c-ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHH
Confidence 1 1111111000 01222222211 1 3445777776655443322 2344457899999995332
Q ss_pred hH---hHHHHHhccccCCCeEEEEeC
Q 006311 580 EP---ETMIVLGNLANENTRVIVTGA 602 (651)
Q Consensus 580 Ep---E~LIpL~~la~~~~rvVLaGD 602 (651)
.- +-+--+-.+..+++++||+.-
T Consensus 183 ~kgfk~Qiydiyr~lp~~~Qvv~~SA 208 (400)
T KOG0328|consen 183 NKGFKEQIYDIYRYLPPGAQVVLVSA 208 (400)
T ss_pred HhhHHHHHHHHHHhCCCCceEEEEec
Confidence 21 111222223346788988864
No 190
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.014 Score=62.92 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=33.0
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||..++....=.-|..+-+ .++.+||+. ++.+|.|.|+|.
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR 160 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR 160 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh
Confidence 4578999999988876433222222322 467788777 678899988764
No 191
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=96.11 E-value=0.032 Score=67.53 Aligned_cols=132 Identities=13% Similarity=0.028 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|=..|.+|.+.+.+ -..++|.-|.|+||| -.-.-.|++-+...+..+-|+.-|||+-|..=.+|+.+...
T Consensus 69 ~~lY~HQ~~A~~~~~~---G~~vvVtTgTgSGKT-----e~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~ 140 (851)
T COG1205 69 ERLYSHQVDALRLIRE---GRNVVVTTGTGSGKT-----ESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELIS 140 (851)
T ss_pred ccccHHHHHHHHHHHC---CCCEEEECCCCCchh-----HHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHH
Confidence 3478899999999887 368999999999999 55544555555446888999999999999998899887221
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCC-----CCCCccEEEEecCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGI-----TAGHFSHIFLIDAS 576 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~-----~~~~F~~IiIDEAs 576 (651)
.... ++... +---+.++.-+. .. .-...+|++|+..+...+..... ...+..+|+|||+-
T Consensus 141 ~~~~-~v~~~-~y~Gdt~~~~r~------~~-------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 141 DLPG-KVTFG-RYTGDTPPEERR------AI-------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hCCC-cceee-eecCCCChHHHH------HH-------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 1110 11110 000011111110 00 12467899999998876332211 11236899999984
No 192
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.09 E-value=0.011 Score=59.26 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccCh
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN 486 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSN 486 (651)
.-|..-.++++..+......+++|+|||||||| +++.++...... .+..++.+.-++
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT------~la~~~~~~~~~-~~~~~~~i~~~~ 76 (226)
T TIGR03420 20 GGNAELLAALRQLAAGKGDRFLYLWGESGSGKS------HLLQAACAAAEE-RGKSAIYLPLAE 76 (226)
T ss_pred CCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHH------HHHHHHHHHHHh-cCCcEEEEeHHH
Confidence 345555666666554445678999999999999 666665544432 345565554443
No 193
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.08 E-value=0.049 Score=60.80 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH-Hh---CCCC--eEEEEccChhhHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RR---SPKS--RILICAPWNRTCDKLMEC 495 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll-~~---~~~~--rILVcApSNsAaD~l~~r 495 (651)
..+++-|..++-..++ ..-+++..|.||||| ...+--++.++ ++ .+.. .-||.|||..-|-+|-+=
T Consensus 27 ~~mTpVQa~tIPlll~---~KDVvveavTGSGKT-----lAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V 98 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK---NKDVVVEAVTGSGKT-----LAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREV 98 (567)
T ss_pred cccCHHHHhhhHHHhc---CCceEEEcCCCCCch-----hhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHH
Confidence 5778999999999887 567899999999999 66555555555 22 2333 468999999887776655
Q ss_pred HHh---hCCCc-chhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc---CCCCCCcc
Q 006311 496 LMK---DIPAS-EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ---GITAGHFS 568 (651)
Q Consensus 496 L~~---~l~~~-~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~---~~~~~~F~ 568 (651)
+.. ++++. ..+=++. | ++.+++..+.. ...+|+|+|..-...+... .+...+.+
T Consensus 99 ~~~F~~~l~~l~~~l~vGG--~---~v~~Di~~fke--------------e~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 99 AQPFLEHLPNLNCELLVGG--R---SVEEDIKTFKE--------------EGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred HHHHHHhhhccceEEEecC--c---cHHHHHHHHHH--------------hCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 443 22221 1111222 1 34444443221 4567999998755444332 24445788
Q ss_pred EEEEecCCCCCh
Q 006311 569 HIFLIDASSATE 580 (651)
Q Consensus 569 ~IiIDEAsQatE 580 (651)
++++|||-...+
T Consensus 160 ~LVLDEADrLld 171 (567)
T KOG0345|consen 160 ILVLDEADRLLD 171 (567)
T ss_pred eEEecchHhHhc
Confidence 999999965443
No 194
>PRK12377 putative replication protein; Provisional
Probab=96.08 E-value=0.0091 Score=62.16 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHhc-----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 425 DSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
++.|+.|+..+..- .+...++|+|||||||| +.+..+..++.+ .+..|++.
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKT-----hLa~AIa~~l~~--~g~~v~~i 135 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKN-----HLAAAIGNRLLA--KGRSVIVV 135 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHH-----HHHHHHHHHHHH--cCCCeEEE
Confidence 56777666544321 22457899999999999 444444444444 35666444
No 195
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.07 E-value=0.015 Score=70.08 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=29.5
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc---CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~---~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||-.+++.. .-.|....+ .++.+||+- +...|.+.|+|.
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR 170 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR 170 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh
Confidence 468899999998888643 333333332 345666655 344566666654
No 196
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.05 E-value=0.018 Score=70.65 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 421 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
...+.+.|++||..++.+ .-+++.-|.|+||| ..-.--+ +.. ....||++|+-+-+..-+.++..
T Consensus 458 ~~sFRp~Q~eaI~aiL~G---rDVLVimPTGSGKS-----LcYQLPA---L~~--~GiTLVISPLiSLmqDQV~~L~~ 522 (1195)
T PLN03137 458 NHSFRPNQREIINATMSG---YDVFVLMPTGGGKS-----LTYQLPA---LIC--PGITLVISPLVSLIQDQIMNLLQ 522 (1195)
T ss_pred CCCCCHHHHHHHHHHHcC---CCEEEEcCCCccHH-----HHHHHHH---HHc--CCcEEEEeCHHHHHHHHHHHHHh
Confidence 468899999999999983 45889999999999 3321111 122 45799999999887655555544
No 197
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.02 E-value=0.024 Score=56.88 Aligned_cols=126 Identities=10% Similarity=0.080 Sum_probs=66.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccCh----hhHHHHHHHHHhhCCCcchhhhcccccccc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN----RTCDKLMECLMKDIPASEMFRANAAFREAD 516 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSN----sAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~ 516 (651)
.+.++|+|++|+||| +......+..+.. +.+|++.-+-- +.=..++++ ++...+.+.+....+..
T Consensus 22 ~g~v~v~~g~GkGKt-----t~a~g~a~ra~g~--G~~V~ivQFlKg~~~~GE~~~l~~----l~~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKS-----TAAFGMALRAVGH--GKKVGVVQFIKGAWSTGERNLLEF----GGGVEFHVMGTGFTWET 90 (191)
T ss_pred CCeEEEECCCCCChH-----HHHHHHHHHHHHC--CCeEEEEEEecCCCccCHHHHHhc----CCCcEEEECCCCCcccC
Confidence 578999999999999 5555555555554 88999886632 222233333 22333444332211100
Q ss_pred CCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCCh-----HhHHHHHhccc
Q 006311 517 GVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE-----PETMIVLGNLA 591 (651)
Q Consensus 517 ~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatE-----pE~LIpL~~la 591 (651)
.-++ +....++ ....-+ ..-+..+.+|.||+||..-|.. .+-++-+....
T Consensus 91 ~~~~------------------e~~~~~~---~~~~~a----~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r 145 (191)
T PRK05986 91 QDRE------------------RDIAAAR---EGWEEA----KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR 145 (191)
T ss_pred CCcH------------------HHHHHHH---HHHHHH----HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC
Confidence 0000 0000000 000000 1113346799999999877654 44455554344
Q ss_pred cCCCeEEEEeC
Q 006311 592 NENTRVIVTGA 602 (651)
Q Consensus 592 ~~~~rvVLaGD 602 (651)
.....|||.|-
T Consensus 146 p~~~evVlTGR 156 (191)
T PRK05986 146 PGMQHVVITGR 156 (191)
T ss_pred CCCCEEEEECC
Confidence 56679999996
No 198
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.99 E-value=0.014 Score=68.30 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 427 DSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 427 ~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
+|++.+..|... ......++..|.||||| ....-.++..+....+.+|+|+|||..-++++.+.+.
T Consensus 1 ~Q~~~~~~i~~al~~~~~lliEA~TGtGKT-----lAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 1 EQALFYLNCLTSLRQKRIGMLEASTGVGKT-----LAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCCCcHH-----HHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHH
Confidence 477766666654 34678899999999999 6655554444443357899999999999999987543
No 199
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.99 E-value=0.03 Score=67.17 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhc----cCCC-ceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF----EGQS-PYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 425 N~~Q~~AV~~iL~~----~~~~-p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
-++|.+.|..+|.. .++. .++|.|+|||||| .|+-.++.++
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKT-----ATVK~VLrEL 805 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKT-----ATVYSVIQLL 805 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHH-----HHHHHHHHHH
Confidence 56788888777753 1222 2469999999999 6665555443
No 200
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.96 E-value=0.028 Score=63.09 Aligned_cols=124 Identities=10% Similarity=0.106 Sum_probs=77.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC--CCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCC
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP--KSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGV 518 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~--~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v 518 (651)
++=++|-.|.|+||| ..-+--|.|++...+ .-|-+|.-||..-+-++..-+....++..+. +.+.+-. .++
T Consensus 183 ~rDIcV~ApTGSGKT-----LaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~-V~~~sgq-~sl 255 (620)
T KOG0350|consen 183 PRDICVNAPTGSGKT-----LAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLA-VCSLSGQ-NSL 255 (620)
T ss_pred CCceEEecCCCCCce-----eeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceE-EEecccc-cch
Confidence 445789999999999 666666777776543 3477889999888877776665433443333 4443221 233
Q ss_pred cHHHHHhhhccccccCCChhhhhcccceEeeehhcc-hhhh-hcCCCCCCccEEEEecCCCCChH
Q 006311 519 SDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSS-FRLH-NQGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 519 ~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa-~~l~-~~~~~~~~F~~IiIDEAsQatEp 581 (651)
.++..+..... -....+|+|+|..-. .++. ..+|.-.|..++|||||-....-
T Consensus 256 ~~E~~qL~~~~----------~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q 310 (620)
T KOG0350|consen 256 EDEARQLASDP----------PECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ 310 (620)
T ss_pred HHHHHHHhcCC----------CccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH
Confidence 33333332221 123678999997632 2233 24455667889999999876543
No 201
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.91 E-value=0.041 Score=59.60 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=33.4
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc--CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.++|||||-.+++..+=.-|..+-. .++.+||+- ++.+|.|.|+|.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence 4688999999998887654333333333 356666655 557899998875
No 202
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=95.90 E-value=0.0081 Score=75.00 Aligned_cols=52 Identities=12% Similarity=0.055 Sum_probs=44.3
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC----------CCeEEEEccChhhHHHHHHHHHh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP----------KSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~----------~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..||-.-.||||| +||+...+.++-... ..+|||+|+||+|+.+|-+|+.+
T Consensus 18 G~~LIEASAGTGKT-----yTIa~lyLrLlL~~g~~~~~~~~L~~~~ILvvTFT~aAt~Elr~RIr~ 79 (1181)
T PRK10876 18 GERLIEASAGTGKT-----FTIAALYLRLLLGLGGSAAFPRPLTVEEILVVTFTEAATEELRGRIRS 79 (1181)
T ss_pred CCEEEEeCCCCcHH-----HHHHHHHHHHHccCCccccccCCCChhhEEEEechHHHHHHHHHHHHH
Confidence 47899999999999 999999887765321 24899999999999999999876
No 203
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=95.88 E-value=0.042 Score=63.57 Aligned_cols=54 Identities=7% Similarity=0.081 Sum_probs=40.9
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
++...+|.|..|+||| +-|-..+.+.--. ...+|-++-|-..||-.+++|+...
T Consensus 65 ~nqvlIviGeTGsGKS-----TQipQyL~eaG~~-~~g~I~~TQPRRVAavslA~RVAeE 118 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKS-----TQIPQYLAEAGFA-SSGKIACTQPRRVAAVSLAKRVAEE 118 (674)
T ss_pred HCCEEEEEcCCCCCcc-----ccHhHHHHhcccc-cCCcEEeecCchHHHHHHHHHHHHH
Confidence 4789999999999999 6665544432222 2334888889999999999999873
No 204
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.85 E-value=0.022 Score=66.00 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhccC-CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 425 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~-~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
++.-.+.+...+...+ ...||++|||||||| |++.++...+-+
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKT------t~Ar~lAk~L~c 64 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKT------SSARAFARCLNC 64 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHhhcc
Confidence 4444455555554322 334899999999999 777776655543
No 205
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.85 E-value=0.016 Score=63.23 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHH-HHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ-IRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q-ll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..+.-|++|+-.+|+ ..-++.-.-.|+||| .+.+--|++ ++......+.||.|||..-|-+|.+-.-. +.
T Consensus 83 ~PT~IQ~~aiP~~L~---g~dvIglAeTGSGKT-----~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~-Lg 153 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG---GRDVIGLAETGSGKT-----GAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEA-LG 153 (476)
T ss_pred CCchhhhhhcchhhC---CCcEEEEeccCCCch-----hhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHH-hc
Confidence 567789999999998 456788889999999 665554544 44443446899999999999999887653 22
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchh-hh-hcCCCCCCccEEEEecCCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LH-NQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~-l~-~~~~~~~~F~~IiIDEAsQat 579 (651)
.+-=+|+. +...+..+........++-.|+|+|...... +. ..+|.-....++++|||-...
T Consensus 154 ~~iglr~~----------------~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlL 217 (476)
T KOG0330|consen 154 SGIGLRVA----------------VLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLL 217 (476)
T ss_pred cccCeEEE----------------EEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhh
Confidence 22112211 0001111111112233566889998875533 22 244544557899999998876
Q ss_pred hHhHHHHHhccc---cCCCeEEEEeCCC
Q 006311 580 EPETMIVLGNLA---NENTRVIVTGAPH 604 (651)
Q Consensus 580 EpE~LIpL~~la---~~~~rvVLaGD~~ 604 (651)
+-+..--|.... ....+.+|++-.|
T Consensus 218 d~dF~~~ld~ILk~ip~erqt~LfsATM 245 (476)
T KOG0330|consen 218 DMDFEEELDYILKVIPRERQTFLFSATM 245 (476)
T ss_pred hhhhHHHHHHHHHhcCccceEEEEEeec
Confidence 654433332221 2456889988755
No 206
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=95.85 E-value=0.037 Score=66.21 Aligned_cols=131 Identities=12% Similarity=0.041 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHH-HHHHHHHh-----CCCCeEEEEccChhhHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVRE-AVLQIRRR-----SPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~Tlve-aI~qll~~-----~~~~rILVcApSNsAaD~l~~r 495 (651)
..+++-|+.|+..|.. -.-+||..|.|+||| .+-.- ++-.+++. ..+-.+|..+|=.+-...+..|
T Consensus 21 ~~~t~~Q~~a~~~i~~---G~nvLiiAPTGsGKT-----eAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~r 92 (814)
T COG1201 21 TSLTPPQRYAIPEIHS---GENVLIIAPTGSGKT-----EAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRR 92 (814)
T ss_pred CCCCHHHHHHHHHHhC---CCceEEEcCCCCChH-----HHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHH
Confidence 4789999999999997 346799999999999 44332 23334443 1235799999999988888888
Q ss_pred HHhhCCCcchhhhcc--ccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCC--CCCccEE
Q 006311 496 LMKDIPASEMFRANA--AFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GIT--AGHFSHI 570 (651)
Q Consensus 496 L~~~l~~~~i~Rv~a--~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~--~~~F~~I 570 (651)
|..... +++- .-|. .+.++.-++ +..-.-..|++||.-+...+... .+. -....+|
T Consensus 93 L~~~~~-----~~G~~v~vRh-GDT~~~er~-------------r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~V 153 (814)
T COG1201 93 LEEPLR-----ELGIEVAVRH-GDTPQSEKQ-------------KMLKNPPHILITTPESLAILLNSPKFRELLRDVRYV 153 (814)
T ss_pred HHHHHH-----HcCCccceec-CCCChHHhh-------------hccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEE
Confidence 875111 1110 0010 011111110 00113357999999877655432 111 1246799
Q ss_pred EEecCCCCC
Q 006311 571 FLIDASSAT 579 (651)
Q Consensus 571 iIDEAsQat 579 (651)
||||.....
T Consensus 154 IVDEiHel~ 162 (814)
T COG1201 154 IVDEIHALA 162 (814)
T ss_pred Eeehhhhhh
Confidence 999986543
No 207
>PRK06893 DNA replication initiation factor; Validated
Probab=95.85 E-value=0.019 Score=58.61 Aligned_cols=37 Identities=5% Similarity=0.022 Sum_probs=22.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
.+.++|+|||||||| +.+..+..++.+. +.++.....
T Consensus 39 ~~~l~l~G~~G~GKT-----hL~~ai~~~~~~~--~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKS-----HLLKAVSNHYLLN--QRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHH-----HHHHHHHHHHHHc--CCCeEEeeH
Confidence 344699999999999 4444444444443 445544443
No 208
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=95.82 E-value=0.074 Score=63.17 Aligned_cols=165 Identities=10% Similarity=0.090 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHHhc---c----CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCC-----CeEEEEccChhh
Q 006311 421 NYKLDSDSNSAVHQILSF---E----GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK-----SRILICAPWNRT 488 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~---~----~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~-----~rILVcApSNsA 488 (651)
...|-+.|++.+..+-.+ . +..=.++-=-||+||| .-.+..+.-++++.|. .+-||+||+- -
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKT-----lq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-L 309 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKT-----LQCISFIWTLLRQFPQAKPLINKPLVVAPSS-L 309 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchH-----HHHHHHHHHHHHhCcCccccccccEEEccHH-H
Confidence 357889999999987654 1 1122455557999999 9999999999999999 9999999964 2
Q ss_pred HHHHHHHHHhhCC--CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCC
Q 006311 489 CDKLMECLMKDIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGH 566 (651)
Q Consensus 489 aD~l~~rL~~~l~--~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~ 566 (651)
+.+=.+.+.+-.. ....+++.....+ ..-....+.......| ..-|.+-...++.... ..+..+.
T Consensus 310 v~nWkkEF~KWl~~~~i~~l~~~~~~~~---~w~~~~sil~~~~~~~---------~~~vli~sye~~~~~~-~~il~~~ 376 (776)
T KOG0390|consen 310 VNNWKKEFGKWLGNHRINPLDFYSTKKS---SWIKLKSILFLGYKQF---------TTPVLIISYETASDYC-RKILLIR 376 (776)
T ss_pred HHHHHHHHHHhccccccceeeeecccch---hhhhhHHHHHhhhhhe---------eEEEEeccHHHHHHHH-HHHhcCC
Confidence 3333334433111 1122333322221 0000011111111111 1123333333333222 2244557
Q ss_pred ccEEEEecCCCCChHhH--HHHHhccccCCCeEEEEeCCCC
Q 006311 567 FSHIFLIDASSATEPET--MIVLGNLANENTRVIVTGAPHN 605 (651)
Q Consensus 567 F~~IiIDEAsQatEpE~--LIpL~~la~~~~rvVLaGD~~Q 605 (651)
++++|.||+...-.-+. +.+|..+ +...||+|.|=|.|
T Consensus 377 ~glLVcDEGHrlkN~~s~~~kaL~~l-~t~rRVLLSGTp~Q 416 (776)
T KOG0390|consen 377 PGLLVCDEGHRLKNSDSLTLKALSSL-KTPRRVLLTGTPIQ 416 (776)
T ss_pred CCeEEECCCCCccchhhHHHHHHHhc-CCCceEEeeCCccc
Confidence 99999999987655544 4445433 23469999999999
No 209
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.82 E-value=0.016 Score=65.10 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC----------CCeEEEEccChhhHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP----------KSRILICAPWNRTCDK 491 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~----------~~rILVcApSNsAaD~ 491 (651)
...++-|+-++..|.. ..=.+..++.|+||| .-.+.=+|-++++..+ ..++||.|||+.-||+
T Consensus 95 ~~ptpvQk~sip~i~~---Grdl~acAqTGsGKT----~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Q 167 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISG---GRDLMACAQTGSGKT----AAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQ 167 (482)
T ss_pred cCCCcceeeccceeec---CCceEEEccCCCcch----HHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhH
Confidence 4668889999988776 234589999999999 2334455555555432 4689999999999999
Q ss_pred HHHHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-CCCCCccEE
Q 006311 492 LMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHI 570 (651)
Q Consensus 492 l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~~~~~F~~I 570 (651)
+-++-.+.. ...-+|.....+. ..+..-....-++++|+++|.--...+...+ +.-....++
T Consensus 168 i~nea~k~~-~~s~~~~~~~ygg----------------~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~ 230 (482)
T KOG0335|consen 168 IYNEARKFS-YLSGMKSVVVYGG----------------TDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFL 230 (482)
T ss_pred HHHHHHhhc-ccccceeeeeeCC----------------cchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEE
Confidence 999887621 1111111111110 0000001122368899999988666655332 222345689
Q ss_pred EEecCCCCCh
Q 006311 571 FLIDASSATE 580 (651)
Q Consensus 571 iIDEAsQatE 580 (651)
++|||-.+..
T Consensus 231 vLDEADrMlD 240 (482)
T KOG0335|consen 231 VLDEADRMLD 240 (482)
T ss_pred EecchHHhhh
Confidence 9999966544
No 210
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.79 E-value=0.036 Score=63.76 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccc---cCCCeEEEEeC-CCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTGA-PHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la---~~~~rvVLaGD-~~QL~PvV~S~ 613 (651)
+.+.++|||||..++. ++.-+|.... ...+++||++. +..|.|.+.|.
T Consensus 116 ~~~KVvIIDEad~Lt~-~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR 167 (535)
T PRK08451 116 ARFKIFIIDEVHMLTK-EAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 167 (535)
T ss_pred CCeEEEEEECcccCCH-HHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh
Confidence 3588999999977664 4433333222 24567777664 56788877765
No 211
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.79 E-value=0.029 Score=61.56 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=30.4
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccc-cC--CCeEEEE-eCCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLA-NE--NTRVIVT-GAPHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la-~~--~~rvVLa-GD~~QL~PvV~S~ 613 (651)
+.+.+||||||-.+++... -.|.... .+ ++.+||+ -++.++.|.+.|.
T Consensus 140 ~~~kVviIDead~m~~~aa-naLLK~LEepp~~~~~IL~t~~~~~llpti~SR 191 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAA-NALLKVLEEPPARSLFLLVSHAPARLLPTIRSR 191 (365)
T ss_pred CCCEEEEEechHhcCHHHH-HHHHHHHhcCCCCeEEEEEECCchhchHHhhcc
Confidence 4688999999977765543 3443333 32 4455554 4566888887764
No 212
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.72 E-value=0.0061 Score=62.59 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=20.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
-+.++++||||+||| |++.+|.+-+.
T Consensus 50 l~h~lf~GPPG~GKT------TLA~IIA~e~~ 75 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKT------TLARIIANELG 75 (233)
T ss_dssp --EEEEESSTTSSHH------HHHHHHHHHCT
T ss_pred cceEEEECCCccchh------HHHHHHHhccC
Confidence 356899999999999 99998876444
No 213
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=95.72 E-value=0.025 Score=67.50 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=58.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCC-ceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHH
Q 006311 417 CPYSNYKLDSDSNSAVHQILSFEGQS-PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLM 493 (651)
Q Consensus 417 ~~~~~~~LN~~Q~~AV~~iL~~~~~~-p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~ 493 (651)
..+......+.|..|+..++...... .+++.+|.|.||| ...+......... ....|++.+-|..++++.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT-----~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~ 263 (733)
T COG1203 189 KSFIEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKT-----EASLILALALLDEKIKLKSRVIYVLPFRTIIEDMY 263 (733)
T ss_pred ccccCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChH-----HHHHHHHHHHhhccccccceEEEEccHHHHHHHHH
Confidence 33444556889999999999875555 9999999999999 4444333333332 14789999999999999999
Q ss_pred HHHHh
Q 006311 494 ECLMK 498 (651)
Q Consensus 494 ~rL~~ 498 (651)
+|+..
T Consensus 264 ~r~~~ 268 (733)
T COG1203 264 RRAKE 268 (733)
T ss_pred HHHHh
Confidence 99986
No 214
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.71 E-value=0.022 Score=57.57 Aligned_cols=54 Identities=6% Similarity=-0.054 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 423 KLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.-|.....++...... ....+++|+|||||||| +++.++...... .+..+.++.
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT------~La~ai~~~~~~-~~~~~~~i~ 77 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRS------HLLQALVADASY-GGRNARYLD 77 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHH------HHHHHHHHHHHh-CCCcEEEEe
Confidence 4577777777665542 23578999999999999 666666554432 244444443
No 215
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=95.67 E-value=0.055 Score=63.53 Aligned_cols=65 Identities=8% Similarity=-0.152 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
....+-|..++-.++.+ . +.+...|+||| .+.+-.++.... .+..++|+|||..-|....+.+..
T Consensus 102 ~~p~~VQ~~~~~~ll~G--~---Iae~~TGeGKT-----la~~lp~~~~al--~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 102 QRHFDVQLMGGLALLSG--R---LAEMQTGEGKT-----LTATLPAGTAAL--AGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred CCCChHHHHHHHHHhCC--C---eeeeeCCCCcH-----HHHHHHHHHHhh--cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 34467899999888863 2 88999999999 666555544333 478999999999888777776654
No 216
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.66 E-value=0.044 Score=61.60 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=26.0
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..+++.|++|+||| +|++.+..++.+. +.+|++++
T Consensus 96 ~vI~lvG~~GsGKT-----TtaakLA~~L~~~--g~kV~lV~ 130 (437)
T PRK00771 96 QTIMLVGLQGSGKT-----TTAAKLARYFKKK--GLKVGLVA 130 (437)
T ss_pred eEEEEECCCCCcHH-----HHHHHHHHHHHHc--CCeEEEec
Confidence 45789999999999 8888877665543 56666544
No 217
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.045 Score=63.90 Aligned_cols=42 Identities=7% Similarity=0.083 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHhccC-CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~-~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
++.-.+.+.+++...+ ..-+|++|||||||| |++.++.+.+.
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKT------tiArilAk~L~ 63 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKT------TIARIFAKALN 63 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHH------HHHHHHHHhcc
Confidence 3333444555554323 355778999999999 77776665554
No 218
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.63 E-value=0.016 Score=61.00 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhc-----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 427 DSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 427 ~Q~~AV~~iL~~-----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+.++.+..++.. ....+++|+|||||||| +++.++.+.+.
T Consensus 11 ~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT------~la~~ia~~~~ 55 (305)
T TIGR00635 11 KVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKT------TLAHIIANEMG 55 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHH------HHHHHHHHHhC
Confidence 344445555532 22456999999999999 66666655443
No 219
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.62 E-value=0.0064 Score=63.16 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=37.7
Q ss_pred CccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHcC
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT 631 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~~ 631 (651)
.|+||+||||...+..+. --|..++....+++++||++|- |++ -.|-+.++|.++.+.
T Consensus 256 ~~~~i~IDE~QD~s~~Q~-~il~~l~~~~~~~~~vGD~~Qs---IY~----frga~~~~~~~~~~~ 313 (315)
T PF00580_consen 256 RYDHILIDEFQDTSPLQL-RILKKLFKNPENLFIVGDPNQS---IYG----FRGADPELFEEFKER 313 (315)
T ss_dssp HSSEEEESSGGG-BHHHH-HHHHHHHTTTTTEEEEE-GGG-----GG----GGTB-THHHHHHHHH
T ss_pred hCCeEEeEccccCCHHHH-HHHHHHHHhhceeEEeCCCCcc---eee----cCCCCHHHHHHHHhh
Confidence 599999999966665554 4455477666679999999994 222 245677788776543
No 220
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.61 E-value=0.033 Score=60.08 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHhc----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
-++|.+++...+.. ..++..+|+|||||||| .++-++..++.
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT-----~l~~~~~~~l~ 65 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKT-----AVTKYVMKELE 65 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHH-----HHHHHHHHHHH
Confidence 56777777777652 23567999999999999 55544444443
No 221
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.60 E-value=0.008 Score=62.46 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=20.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..+++++|||||||| |++.++...+.
T Consensus 42 ~~~vll~GppGtGKT------tlA~~ia~~l~ 67 (261)
T TIGR02881 42 VLHMIFKGNPGTGKT------TVARILGKLFK 67 (261)
T ss_pred cceEEEEcCCCCCHH------HHHHHHHHHHH
Confidence 356899999999999 78887766554
No 222
>PRK08116 hypothetical protein; Validated
Probab=95.56 E-value=0.042 Score=57.78 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHH---hc-----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 424 LDSDSNSAVHQIL---SF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 424 LN~~Q~~AV~~iL---~~-----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
-++.|..|+..+. .. ....+++|+|+|||||| +.+..+..++.+. +.++++.+
T Consensus 89 ~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKT-----hLa~aia~~l~~~--~~~v~~~~ 149 (268)
T PRK08116 89 FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKT-----YLAACIANELIEK--GVPVIFVN 149 (268)
T ss_pred CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEE
Confidence 3566766655443 11 12346999999999999 5544444444443 66666554
No 223
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.52 E-value=0.027 Score=58.83 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHhc----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 424 LDSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
.+..++.|+..+... .+..-.++.|||||||| +..+++...+++ .+.+|++.+-
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKT-----hLa~Ai~~~l~~--~g~sv~f~~~ 141 (254)
T COG1484 84 QPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKT-----HLAIAIGNELLK--AGISVLFITA 141 (254)
T ss_pred CcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHH-----HHHHHHHHHHHH--cCCeEEEEEH
Confidence 355677777766543 34567899999999999 777777777774 3788887754
No 224
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.51 E-value=0.04 Score=60.22 Aligned_cols=50 Identities=12% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCCccEEEEecCCCCChHhHHHHHhcccc--CCCe-EEEEeCCCCCCccccCh
Q 006311 564 AGHFSHIFLIDASSATEPETMIVLGNLAN--ENTR-VIVTGAPHNSPSRVRSD 613 (651)
Q Consensus 564 ~~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~r-vVLaGD~~QL~PvV~S~ 613 (651)
.+.+.+||||||-.+++...-.-|..+-. .++. ++++..+.+|.|.++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSR 191 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSR 191 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhh
Confidence 35688999999987776543222222222 2333 55666788888988875
No 225
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.51 E-value=0.053 Score=57.20 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=29.2
Q ss_pred EEeCcCCCCCCCCchhHHHHHHHHHHHHhCCC-CeEEEEccChhhHHHHHH
Q 006311 445 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK-SRILICAPWNRTCDKLME 494 (651)
Q Consensus 445 LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~-~rILVcApSNsAaD~l~~ 494 (651)
+|.||+|.||| +.++..+...+...++ .+|++++.+..|.+.+..
T Consensus 1 ~i~~~r~~GKT-----~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 46 (384)
T PF03237_consen 1 LINGGRGSGKT-----TLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGR 46 (384)
T ss_dssp -EEE-SSS-HH-----HHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHH
T ss_pred CCcCCccccHH-----HHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHH
Confidence 58899999999 7777655555554565 678888666666766555
No 226
>PRK13909 putative recombination protein RecB; Provisional
Probab=95.41 E-value=0.019 Score=70.00 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=41.8
Q ss_pred EEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 445 LLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 445 LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
++..+.||||| .||+...+.++.. ....+||++|+||.||.++-+|+.+.
T Consensus 2 ~~~AsAGsGKT-----~~L~~~yl~ll~~~~~~~~IlavTFT~kAa~Emk~Ri~~~ 52 (910)
T PRK13909 2 ALKASAGSGKT-----FALSVRFLALLFKGANPSEILALTFTKKAANEMKERIIDT 52 (910)
T ss_pred ceecCCCCchh-----HHHHHHHHHHHhcCCCcceEEEEeehHHHHHHHHHHHHHH
Confidence 46789999999 9999887777654 23369999999999999999998873
No 227
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.40 E-value=0.02 Score=61.57 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=40.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..++++.|||||||| ++++.+.+.+.. ....+-|++...+.|.+-.-...
T Consensus 43 ~~~vll~G~PG~gKT------~la~~lA~~l~~--~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 43 GGHVLLEGPPGVGKT------LLARALARALGL--PFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred CCCEEEECCCCccHH------HHHHHHHHHhCC--CeEEEecCCCCCHHHhcCchhHh
Confidence 679999999999999 888888887763 66677788888888877665554
No 228
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.39 E-value=0.081 Score=63.41 Aligned_cols=125 Identities=9% Similarity=-0.006 Sum_probs=70.2
Q ss_pred EEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHHHH
Q 006311 445 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQ 524 (651)
Q Consensus 445 LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~ 524 (651)
+..-..|+||| .+.+-+++ +....+.+++|+|||..-|....+.+....... -++++.. ....+
T Consensus 95 Iaem~TGeGKT-----L~a~lp~~--l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl~v~~i---~g~~~----- 158 (790)
T PRK09200 95 IAEMQTGEGKT-----LTATMPLY--LNALEGKGVHLITVNDYLAKRDAEEMGQVYEFL-GLTVGLN---FSDID----- 158 (790)
T ss_pred eeeecCCCcch-----HHHHHHHH--HHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEE---eCCCC-----
Confidence 88999999999 55444443 222348899999999988877777765411110 0111100 00111
Q ss_pred hhhccccccCCChhhhhcccceEeeehhcchh--hhh-cC-----CCCCCccEEEEecCCCCChHhHHHHHhccccCCCe
Q 006311 525 VSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHN-QG-----ITAGHFSHIFLIDASSATEPETMIVLGNLANENTR 596 (651)
Q Consensus 525 y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~--l~~-~~-----~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~r 596 (651)
. ...+....+++|+++|..-.+. +.. +. .-...+.++|||||-.+.--|+ .+-
T Consensus 159 --------~-~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea----------~tp 219 (790)
T PRK09200 159 --------D-ASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEA----------QTP 219 (790)
T ss_pred --------c-HHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccC----------CCc
Confidence 0 0112234568899999775532 121 10 1123488999999977654333 345
Q ss_pred EEEEeCCC
Q 006311 597 VIVTGAPH 604 (651)
Q Consensus 597 vVLaGD~~ 604 (651)
+|+.|...
T Consensus 220 liisg~~~ 227 (790)
T PRK09200 220 LIISGKPR 227 (790)
T ss_pred eeeeCCCc
Confidence 66666543
No 229
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.39 E-value=0.022 Score=54.63 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhc---cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 426 SDSNSAVHQILSF---EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 426 ~~Q~~AV~~iL~~---~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
++|.+.+...+.. .....++|.|++|+||| +.+.+...++...
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT-----~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKT-----SLLRALLDRLAER 51 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHH-----HHHHHHHHHHHhc
Confidence 4677777777732 23578999999999999 6655555444443
No 230
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=95.36 E-value=0.019 Score=71.51 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=46.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC---CCCeEEEEccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---PKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~---~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..-.+|-.-.||||| .||++.++.++... .-.+|||+|+||.||.++-+|+.+
T Consensus 16 ~~~~lveASAGSGKT-----~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 16 GQSVLVEASAGTGKT-----FVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCcEEEEEcCCCCch-----hHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHH
Confidence 457899999999999 99999998888762 346999999999999999999987
No 231
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.068 Score=60.90 Aligned_cols=25 Identities=12% Similarity=0.344 Sum_probs=19.1
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..||++|||||||| |++.++...+.
T Consensus 39 hayLf~Gp~G~GKT------tlAr~lAk~L~ 63 (486)
T PRK14953 39 HAYIFAGPRGTGKT------TIARILAKVLN 63 (486)
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 34789999999999 77766665544
No 232
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.35 E-value=0.027 Score=61.33 Aligned_cols=58 Identities=9% Similarity=0.167 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHH
Q 006311 428 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKL 492 (651)
Q Consensus 428 Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l 492 (651)
|.--+...+...+-+-.++||||||||| ||+.+|..--+. +..+.+-.+-||+-+..+
T Consensus 149 q~gllrs~ieq~~ipSmIlWGppG~GKT------tlArlia~tsk~-~SyrfvelSAt~a~t~dv 206 (554)
T KOG2028|consen 149 QDGLLRSLIEQNRIPSMILWGPPGTGKT------TLARLIASTSKK-HSYRFVELSATNAKTNDV 206 (554)
T ss_pred cchHHHHHHHcCCCCceEEecCCCCchH------HHHHHHHhhcCC-CceEEEEEeccccchHHH
Confidence 3334444444345677899999999999 888877654442 334555555566555444
No 233
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.35 E-value=0.025 Score=58.64 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=40.6
Q ss_pred cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 439 EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 439 ~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
.....++|.|+|||||| ....+.+.+.++. +.+++..|..-.+.+.+-..
T Consensus 21 p~g~~~lI~G~pGsGKT-----~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKT-----IFALQFLYEGARE--GEPVLYVSTEESPEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHH-----HHHHHHHHHHHhc--CCcEEEEEecCCHHHHHHHH
Confidence 34678999999999999 8888888887775 88999998887777665544
No 234
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.32 E-value=0.057 Score=59.73 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=30.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.+.+.+.||.|-||| +|||.+..+........+|-+.|
T Consensus 203 ~~vi~LVGPTGVGKT-----TTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKT-----TTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHH-----HHHHHHHHHHHhhccCcceEEEE
Confidence 678999999999999 99999988777333466765554
No 235
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.25 E-value=0.056 Score=63.34 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
...-++|++.+..+... .+....+|.+|.||||| .....+++..... .+.+|.++|.|+..-|.+.++...
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKT-----l~yL~~al~~~~~-~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKT-----LAYLLPALAYARE-EGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHH-----HHHHHHHHHHHHH-cCCcEEEECCCHHHHHHHHHhhcc
Confidence 45678899888777643 34556999999999999 5544444443333 468999999999999999998776
No 236
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.21 E-value=0.049 Score=61.22 Aligned_cols=56 Identities=9% Similarity=0.159 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHhcc--CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 424 LDSDSNSAVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~--~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
-|..-..|+..+.... ...|++|+|||||||| +.+..+..++.+..++.+++..+.
T Consensus 129 ~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKT-----hL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 129 SNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKT-----HLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHH-----HHHHHHHHHHHHhCCCCeEEEEEH
Confidence 3554455555554322 2368999999999999 554444455555445777776644
No 237
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.18 E-value=0.093 Score=51.94 Aligned_cols=37 Identities=3% Similarity=-0.084 Sum_probs=28.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
.+.+.|++++|+||| +......++.... +.+|+++-+
T Consensus 5 ~Gli~v~~g~GkGKt-----t~a~g~a~ra~~~--g~~v~ivQF 41 (173)
T TIGR00708 5 RGIIIVHTGNGKGKT-----TAAFGMALRALGH--GKKVGVIQF 41 (173)
T ss_pred ccEEEEECCCCCChH-----HHHHHHHHHHHHC--CCeEEEEEE
Confidence 467889999999999 6665656655554 889988844
No 238
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.066 Score=62.49 Aligned_cols=42 Identities=5% Similarity=0.028 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHhccC-CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~-~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
++...+.+..++...+ +..+|++||+|+||| |++.++...+.
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKT------t~Ar~lAk~L~ 71 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKT------TTARILARALN 71 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHH------HHHHHHHHhhC
Confidence 5555555666554333 335899999999999 66666655544
No 239
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.038 Score=64.31 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHhccC-CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~-~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
++.-.+.+...+...+ ...+|++||||+||| |++.++.+.+.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKT------tlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKT------STARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 4444444544444222 234799999999999 77777766554
No 240
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.11 E-value=0.083 Score=51.25 Aligned_cols=49 Identities=29% Similarity=0.393 Sum_probs=31.1
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc--CCCeEEEEeC-CCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGA-PHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~rvVLaGD-~~QL~PvV~S~ 613 (651)
+.+.++|||||..+++...=.-|..+-. .++.+||+-+ +.+|.|.|+|.
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR 152 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR 152 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh
Confidence 4688999999988776543333332222 3567776655 67799999885
No 241
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.11 E-value=0.043 Score=60.10 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=24.1
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
...+++|.|||||||| |+++++...+..
T Consensus 77 ~r~il~L~GPPGsGKS------tla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKS------SLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHH------HHHHHHHHHHhh
Confidence 3578899999999999 999998877765
No 242
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.08 E-value=0.086 Score=57.98 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=73.2
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEEEccChh-hHHHHHHHHHhhCCCcchhhhccccccccCCcH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNR-TCDKLMECLMKDIPASEMFRANAAFREADGVSD 520 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILVcApSNs-AaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~ 520 (651)
..++.|+-|+||| .+++..+...+... ++.+++++.++.. ..+.+...+...+....+- ...+
T Consensus 3 ~~i~~GgrgSGKS-----~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~---~~~~------- 67 (396)
T TIGR01547 3 EIIAKGGRRSGKT-----FAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGIN---YEFK------- 67 (396)
T ss_pred eEEEeCCCCcccH-----HHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCCh---hhee-------
Confidence 4689999999999 77765555444444 7899999999776 5555555554322111100 0000
Q ss_pred HHHHhhhcccc--ccCCChhhhhc-ccceEeeeh-hcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhccccCCCe
Q 006311 521 EIFQVSLVERE--CFSCPPLEELR-QYKVISSTF-VSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTR 596 (651)
Q Consensus 521 ~l~~y~~~~~~--~f~~p~~~~L~-~~rIVvtT~-ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~r 596 (651)
.... .+. ... ...|++..+ .....+.+. ..++.++||||++..+...-..+..+...+++
T Consensus 68 -------~~~~~~~i~-----~~~~g~~i~f~g~~d~~~~ik~~----~~~~~~~idEa~~~~~~~~~~l~~rlr~~~~~ 131 (396)
T TIGR01547 68 -------KSKSSMEIK-----ILNTGKKFIFKGLNDKPNKLKSG----AGIAIIWFEEASQLTFEDIKELIPRLRETGGK 131 (396)
T ss_pred -------ecCCccEEE-----ecCCCeEEEeecccCChhHhhCc----ceeeeehhhhhhhcCHHHHHHHHHHhhccCCc
Confidence 0000 111 012 345666665 333222211 12689999999999876443333333333334
Q ss_pred --EEEEeCCCC
Q 006311 597 --VIVTGAPHN 605 (651)
Q Consensus 597 --vVLaGD~~Q 605 (651)
+++..=|..
T Consensus 132 ~~i~~t~NP~~ 142 (396)
T TIGR01547 132 KFIIFSSNPES 142 (396)
T ss_pred cEEEEEcCcCC
Confidence 888877755
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.08 E-value=0.062 Score=58.03 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=35.5
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc--CCCeEEEEeC-CCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGA-PHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~rvVLaGD-~~QL~PvV~S~ 613 (651)
|.+.+||||||-.+++..+=--|..+-. .++.+||+.+ +.+|.|+|+|.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 4688999999988887654333333333 3678888888 78899998875
No 244
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.07 E-value=0.045 Score=56.12 Aligned_cols=60 Identities=10% Similarity=-0.041 Sum_probs=40.3
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.+..+|++ .....++|.|||||||| ......+.+-++. +.++++++.. ...+.+.++...
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT-----~la~~~l~~~~~~--ge~~lyvs~e-e~~~~i~~~~~~ 70 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKS-----IFSQQFLWNGLQM--GEPGIYVALE-EHPVQVRRNMAQ 70 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHH-----HHHHHHHHHHHHc--CCcEEEEEee-CCHHHHHHHHHH
Confidence 34455643 34568999999999999 5444555554543 7888888854 455567776654
No 245
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.07 E-value=0.025 Score=55.79 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
...-.+|+|||||||| +..+.+..++++. +.+++.... ..+++++.
T Consensus 46 ~~~~l~l~G~~G~GKT-----hLa~ai~~~~~~~--g~~v~f~~~-----~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKT-----HLAVAIANEAIRK--GYSVLFITA-----SDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHH-----HHHHHHHHHHHHT--T--EEEEEH-----HHHHHHHH
T ss_pred cCeEEEEEhhHhHHHH-----HHHHHHHHHhccC--CcceeEeec-----Cceecccc
Confidence 3456899999999999 6666666666664 777777653 34555554
No 246
>PHA02533 17 large terminase protein; Provisional
Probab=95.07 E-value=0.35 Score=55.89 Aligned_cols=148 Identities=8% Similarity=0.040 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|+..+..+.. ....+|.=+=..||| ++++...+......++.+|+++|++-..|..+.+++...+.
T Consensus 58 f~L~p~Q~~i~~~~~~---~R~~ii~~aRq~GKS-----tl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK---NRFNACNLSRQLGKT-----TVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred cCCcHHHHHHHHHHhc---CeEEEEEEcCcCChH-----HHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3689999999987643 335567778999999 66554333333235788999999999999999988865221
Q ss_pred Ccc-hhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCCh
Q 006311 502 ASE-MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~-i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatE 580 (651)
... +++.... + ........ -..++|.+.|... .. ....+++.++|||++....
T Consensus 130 ~~P~l~~~~i~-~--------------~~~~~I~l-----~NGS~I~~lss~~-~t-----~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 130 LLPDFLQPGIV-E--------------WNKGSIEL-----ENGSKIGAYASSP-DA-----VRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred hCHHHhhccee-e--------------cCccEEEe-----CCCCEEEEEeCCC-Cc-----cCCCCCceEEEeccccCCC
Confidence 111 1110000 0 00000000 1345554444332 11 2223577899999998765
Q ss_pred H----hHHHHHhccccCCCeEEEEeCCC
Q 006311 581 P----ETMIVLGNLANENTRVIVTGAPH 604 (651)
Q Consensus 581 p----E~LIpL~~la~~~~rvVLaGD~~ 604 (651)
. ..+.|.. ....++++++++=|.
T Consensus 184 ~~e~~~ai~p~l-asg~~~r~iiiSTp~ 210 (534)
T PHA02533 184 FIDFWLAIQPVI-SSGRSSKIIITSTPN 210 (534)
T ss_pred HHHHHHHHHHHH-HcCCCceEEEEECCC
Confidence 4 2455554 222345777777654
No 247
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.058 Score=55.74 Aligned_cols=62 Identities=8% Similarity=0.128 Sum_probs=36.8
Q ss_pred CccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHcC
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT 631 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~~ 631 (651)
..++|||||.|...++.++. . .+..+-++|-.---.++--++..+.-++. ++.--|+|-.+.
T Consensus 218 ~PEViIvDEIGt~~d~~A~~--t-a~~~GVkli~TaHG~~iedl~krp~lkdl-v~i~af~r~~el 279 (308)
T COG3854 218 SPEVIIVDEIGTEEDALAIL--T-ALHAGVKLITTAHGNGIEDLIKRPTLKDL-VEIQAFDRGIEL 279 (308)
T ss_pred CCcEEEEeccccHHHHHHHH--H-HHhcCcEEEEeeccccHHHhhcChhHHHH-HhhhHHHHHHHH
Confidence 47899999999665554443 3 33344567766665666555554433332 255667776653
No 248
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.03 E-value=0.025 Score=62.44 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..--++|++.+...+.. ..+.-+||+|||||||| +++.++..-+
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT------~lAkaia~~~ 189 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKT------LLAKAVAHET 189 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChH------HHHHHHHHHh
Confidence 33456677777665421 12345899999999999 7777776543
No 249
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.03 E-value=0.1 Score=63.93 Aligned_cols=130 Identities=13% Similarity=0.155 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHhc-cCCCc--eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSF-EGQSP--YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~-~~~~p--~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
...++.|..||+.|..- ....| =||.|-=|=||| -+...|+.-.+.. +++|.|.+||---|.+=-+.+.+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKT-----EVAmRAAFkAV~~--GKQVAvLVPTTlLA~QHy~tFke 665 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKT-----EVAMRAAFKAVMD--GKQVAVLVPTTLLAQQHYETFKE 665 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHH-----HHHHHHHHHHhcC--CCeEEEEcccHHhHHHHHHHHHH
Confidence 46799999999999864 22333 399999999999 8888887766664 89999999999999888777777
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhh--hcccceEeeehhcchhhhhcCCCCCCccEEEEecCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEE--LRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 576 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~--L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs 576 (651)
++.+. ++|+.--+|.... .+.... .+. -.+.+|||+|-. +.+.++.....-.+||||=.
T Consensus 666 RF~~f-PV~I~~LSRF~s~--kE~~~i------------l~~la~G~vDIvIGTHr----LL~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 666 RFAGF-PVRIEVLSRFRSA--KEQKEI------------LKGLAEGKVDIVIGTHR----LLSKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred HhcCC-CeeEEEecccCCH--HHHHHH------------HHHHhcCCccEEEechH----hhCCCcEEecCCeEEEechh
Confidence 55433 4555555553211 111100 011 156789999965 34445555556699999965
Q ss_pred C
Q 006311 577 S 577 (651)
Q Consensus 577 Q 577 (651)
.
T Consensus 727 R 727 (1139)
T COG1197 727 R 727 (1139)
T ss_pred h
Confidence 4
No 250
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.03 E-value=0.013 Score=61.88 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=21.0
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
+++++|||||||| ++|.++.+.+..
T Consensus 60 ~vll~G~pGTGKT------~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKT------TVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHH------HHHHHHHHHHHH
Confidence 7899999999999 888777766654
No 251
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.07 Score=59.32 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=31.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc-cChh--hHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA-PWNR--TCDKLM 493 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA-pSNs--AaD~l~ 493 (651)
+..++|.||+|+||| +|++.+..++... +.+|++++ .+.. |++.+.
T Consensus 241 ~~vI~LVGptGvGKT-----TTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk 289 (436)
T PRK11889 241 VQTIALIGPTGVGKT-----TTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQ 289 (436)
T ss_pred CcEEEEECCCCCcHH-----HHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHH
Confidence 356789999999999 8888887776543 66776544 3443 444433
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.98 E-value=0.039 Score=51.13 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=28.3
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDK 491 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~ 491 (651)
++|.|||||||| +.+...+.+... .+.+|++........+.
T Consensus 2 ~~i~G~~G~GKT-----~l~~~i~~~~~~--~~~~v~~~~~e~~~~~~ 42 (165)
T cd01120 2 ILVFGPTGSGKT-----TLALQLALNIAT--KGGKVVYVDIEEEIEEL 42 (165)
T ss_pred eeEeCCCCCCHH-----HHHHHHHHHHHh--cCCEEEEEECCcchHHH
Confidence 689999999999 555555554443 47788887776655443
No 253
>PRK09183 transposase/IS protein; Provisional
Probab=94.95 E-value=0.037 Score=57.86 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..+|..|...+...--......++|+|||||||| +++.++...... .+.+|+...
T Consensus 83 ~~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKT------hLa~al~~~a~~-~G~~v~~~~ 137 (259)
T PRK09183 83 TGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKT------HLAIALGYEAVR-AGIKVRFTT 137 (259)
T ss_pred CCCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHH------HHHHHHHHHHHH-cCCeEEEEe
Confidence 5678877776654211123456889999999999 555555443332 477887664
No 254
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.072 Score=58.58 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHhc----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCC-eEEEEccChhhHHHHHHHHHhh
Q 006311 425 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS-RILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 425 N~~Q~~AV~~iL~~----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~-rILVcApSNsAaD~l~~rL~~~ 499 (651)
-++|.+.+..++.. ..+.-.+|.|||||||| .|+-....++....+.. -+=|=+..+..-..+..++...
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT-----~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKT-----ATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHh-----HHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 57788888877764 23334899999999999 66666665555543333 3556666777777777777764
Q ss_pred C
Q 006311 500 I 500 (651)
Q Consensus 500 l 500 (651)
+
T Consensus 97 ~ 97 (366)
T COG1474 97 L 97 (366)
T ss_pred c
Confidence 3
No 255
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.90 E-value=0.025 Score=57.34 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
.+.-+.|+.-+.. +..-.++.|||||||| ++++++..++-.
T Consensus 8 Qe~aKrAL~iAAa--G~h~lLl~GppGtGKT------mlA~~l~~lLP~ 48 (206)
T PF01078_consen 8 QEEAKRALEIAAA--GGHHLLLIGPPGTGKT------MLARRLPSLLPP 48 (206)
T ss_dssp THHHHHHHHHHHH--CC--EEEES-CCCTHH------HHHHHHHHCS--
T ss_pred cHHHHHHHHHHHc--CCCCeEEECCCCCCHH------HHHHHHHHhCCC
Confidence 5566777776655 3568999999999999 888888776543
No 256
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.89 E-value=0.03 Score=60.16 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhc-----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.++.++++..++.. ...+.++|+|||||||| +++.++...+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT------~la~~ia~~l~ 76 (328)
T PRK00080 30 QEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKT------TLANIIANEMG 76 (328)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHH------HHHHHHHHHhC
Confidence 55566666555532 23467999999999999 67776665443
No 257
>PRK10867 signal recognition particle protein; Provisional
Probab=94.85 E-value=0.11 Score=58.36 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=29.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEE-EEccChhhH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL-ICAPWNRTC 489 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rIL-VcApSNsAa 489 (651)
..+++.||+|+||| +|++.++..+.+. .+.+|+ |++.+..++
T Consensus 101 ~vI~~vG~~GsGKT-----TtaakLA~~l~~~-~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 101 TVIMMVGLQGAGKT-----TTAGKLAKYLKKK-KKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEEECCCCCcHH-----HHHHHHHHHHHHh-cCCcEEEEEccccchH
Confidence 35789999999999 8888888766553 355665 555555443
No 258
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.85 E-value=0.23 Score=53.06 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=30.4
Q ss_pred CCccEEEEecCCCCChHh--HHHHHhccccCCCeEEEE-eCCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPE--TMIVLGNLANENTRVIVT-GAPHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE--~LIpL~~la~~~~rvVLa-GD~~QL~PvV~S~ 613 (651)
+...++|||||..+++.. +|.....=...++.+||+ -++.+|.|.|+|.
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 357899999997776632 232222111235677765 4578898988764
No 259
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.83 E-value=0.045 Score=62.27 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=30.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 417 CPYSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 417 ~~~~~~~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
..|.+....+.+++.+..++.. ..+.-+|++|||||||| +++.++..
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT------~la~alA~ 110 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKT------LLAKAVAG 110 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHH------HHHHHHHH
Confidence 3344445567777666655531 12335899999999999 67776654
No 260
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=94.80 E-value=0.1 Score=62.02 Aligned_cols=117 Identities=11% Similarity=-0.021 Sum_probs=68.8
Q ss_pred EEeCcCCCCCCCCchhHHHHHHH-HHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHHH
Q 006311 445 LLEGPLCNNFVLSKTGNVVREAV-LQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIF 523 (651)
Q Consensus 445 LI~GPPGTGKT~s~~~~TlveaI-~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~ 523 (651)
+.+.+.|+||| .+.+-++ +..+ .+.+|+|+|||.--|....+.+........ ++++... ...+..
T Consensus 73 Iaem~TGeGKT-----Lva~lpa~l~aL---~G~~V~VvTpt~~LA~qdae~~~~l~~~LG-Lsv~~i~---g~~~~~-- 138 (745)
T TIGR00963 73 IAEMKTGEGKT-----LTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAEWMGQVYRFLG-LSVGLIL---SGMSPE-- 138 (745)
T ss_pred eeeecCCCccH-----HHHHHHHHHHHH---hCCCEEEEcCCHHHHHHHHHHHHHHhccCC-CeEEEEe---CCCCHH--
Confidence 88899999999 5544333 2333 367899999999888777776654211110 1111110 011111
Q ss_pred HhhhccccccCCChhhhhcccceEeeehhcchh--hhhc------CCCCCCccEEEEecCCCCChHhHHHHHh
Q 006311 524 QVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHNQ------GITAGHFSHIFLIDASSATEPETMIVLG 588 (651)
Q Consensus 524 ~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~--l~~~------~~~~~~F~~IiIDEAsQatEpE~LIpL~ 588 (651)
.+.....++|+++|..-.+. +... .+....+.++|||||-.+..-|+-.||.
T Consensus 139 -------------~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 139 -------------ERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred -------------HHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 11122346899999885532 2111 1233458899999998777667666765
No 261
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.77 E-value=0.054 Score=58.57 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
..++++|.+.+..++.. ..-++|.||+|+||| +++..++..+....++.||++.
T Consensus 127 g~~~~~~~~~L~~~v~~--~~nilI~G~tGSGKT-----Tll~aL~~~i~~~~~~~rivti 180 (323)
T PRK13833 127 KIMTEAQASVIRSAIDS--RLNIVISGGTGSGKT-----TLANAVIAEIVASAPEDRLVIL 180 (323)
T ss_pred CCCCHHHHHHHHHHHHc--CCeEEEECCCCCCHH-----HHHHHHHHHHhcCCCCceEEEe
Confidence 35788999998888873 456899999999999 5554444444333345676553
No 262
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.76 E-value=0.092 Score=60.83 Aligned_cols=55 Identities=5% Similarity=0.071 Sum_probs=40.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
....+|.|-+|+||| +-|=..+.+---...+.+|-++-|-..||--++.|+.+.+
T Consensus 280 ~QVLiI~GeTGSGKT-----TQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 280 HQVLIIVGETGSGKT-----TQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred CcEEEEEcCCCCCcc-----ccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHh
Confidence 678899999999999 6554443332222345668888889999999999998743
No 263
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.74 E-value=0.068 Score=53.95 Aligned_cols=59 Identities=5% Similarity=0.015 Sum_probs=41.3
Q ss_pred HHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 432 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 432 V~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..++++ .....++|.|+||+||| ......+...+++ +.+++.++... ..+.+.+++..
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt-----~~~~~~~~~~~~~--g~~~~y~s~e~-~~~~l~~~~~~ 65 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKT-----TFSLQFLYQGLKN--GEKAMYISLEE-REERILGYAKS 65 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHH-----HHHHHHHHHHHhC--CCeEEEEECCC-CHHHHHHHHHH
Confidence 4455643 23568899999999999 5555555555554 78888887766 56777777754
No 264
>PRK06851 hypothetical protein; Provisional
Probab=94.73 E-value=0.022 Score=62.52 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=36.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
...++|.|||||||| +++-+++.++.+..-.-..+.|+..|.+.|-++-+=
T Consensus 30 ~~~~il~G~pGtGKS-----tl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgviip~ 80 (367)
T PRK06851 30 NRIFILKGGPGTGKS-----TLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPE 80 (367)
T ss_pred ceEEEEECCCCCCHH-----HHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEEecC
Confidence 568999999999999 555555554444322335789999999999876543
No 265
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.70 E-value=0.032 Score=63.29 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=28.2
Q ss_pred HHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 428 SNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 428 Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
|.++|+.++.. -...+++|.|||||||| ++|.++.+...
T Consensus 25 re~vI~lll~aalag~hVLL~GpPGTGKT------~LAraLa~~~~ 64 (498)
T PRK13531 25 RSHAIRLCLLAALSGESVFLLGPPGIAKS------LIARRLKFAFQ 64 (498)
T ss_pred cHHHHHHHHHHHccCCCEEEECCCChhHH------HHHHHHHHHhc
Confidence 44555554432 23679999999999999 88888877654
No 266
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=94.70 E-value=0.055 Score=65.14 Aligned_cols=113 Identities=7% Similarity=-0.078 Sum_probs=62.5
Q ss_pred EEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHHHH
Q 006311 445 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQ 524 (651)
Q Consensus 445 LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~ 524 (651)
+...+.|+||| .+.+-.++.-. ..+..|+|+|||..-|....+.+........ ++++.- ....+..-
T Consensus 99 Iaem~TGeGKT-----L~a~Lpa~~~a--l~G~~V~VvTpn~yLA~qd~e~m~~l~~~lG-Ltv~~i---~gg~~~~~-- 165 (896)
T PRK13104 99 IAEMRTGEGKT-----LVATLPAYLNA--ISGRGVHIVTVNDYLAKRDSQWMKPIYEFLG-LTVGVI---YPDMSHKE-- 165 (896)
T ss_pred cccccCCCCch-----HHHHHHHHHHH--hcCCCEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEE---eCCCCHHH--
Confidence 46779999999 55443333222 2367899999999888777766654211100 111110 00111111
Q ss_pred hhhccccccCCChhhhhcccceEeeehhcchh-hhhcC--CCC-----CCccEEEEecCCCCChHhH
Q 006311 525 VSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQG--ITA-----GHFSHIFLIDASSATEPET 583 (651)
Q Consensus 525 y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~-l~~~~--~~~-----~~F~~IiIDEAsQatEpE~ 583 (651)
+.....++|+++|..-.|. ....+ +.. ..+.++|||||-.+.--|+
T Consensus 166 -------------r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeA 219 (896)
T PRK13104 166 -------------KQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEA 219 (896)
T ss_pred -------------HHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhcc
Confidence 1122357899999887632 22222 211 3688999999976554443
No 267
>PRK08727 hypothetical protein; Validated
Probab=94.65 E-value=0.062 Score=55.11 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=25.3
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...+++|+||+||||| +.+..+..++.+. +.++...+
T Consensus 40 ~~~~l~l~G~~G~GKT-----hL~~a~~~~~~~~--~~~~~y~~ 76 (233)
T PRK08727 40 SSDWLYLSGPAGTGKT-----HLALALCAAAEQA--GRSSAYLP 76 (233)
T ss_pred CCCeEEEECCCCCCHH-----HHHHHHHHHHHHc--CCcEEEEe
Confidence 3467999999999999 5555444444443 66776655
No 268
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.64 E-value=0.065 Score=57.87 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 485 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS 485 (651)
.++++|.+.+..++.. ....+|.||+|+||| +++-+++.++....+..||++.-.+
T Consensus 132 ~~~~~~~~~L~~~v~~--~~~ilI~G~tGSGKT-----Tll~aL~~~~~~~~~~~rivtIEd~ 187 (319)
T PRK13894 132 IMTAAQREAIIAAVRA--HRNILVIGGTGSGKT-----TLVNAIINEMVIQDPTERVFIIEDT 187 (319)
T ss_pred CCCHHHHHHHHHHHHc--CCeEEEECCCCCCHH-----HHHHHHHHhhhhcCCCceEEEEcCC
Confidence 4688899999887763 568899999999999 5554444444333456677665443
No 269
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.13 Score=51.85 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=28.3
Q ss_pred ccEEEEecCCCCChHhHHHHHhccccC-CCeEEEEe
Q 006311 567 FSHIFLIDASSATEPETMIVLGNLANE-NTRVIVTG 601 (651)
Q Consensus 567 F~~IiIDEAsQatEpE~LIpL~~la~~-~~rvVLaG 601 (651)
.+.|+|||| |-..++..--|..+++. +-.|++.|
T Consensus 83 ~~~v~IDEa-QF~~~~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 83 VDCVLIDEA-QFFDEELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred cCEEEEehh-HhCCHHHHHHHHHHHhhcCCEEEEec
Confidence 679999999 66777877778888887 77888888
No 270
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.60 E-value=0.14 Score=57.51 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=27.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE-EccChh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI-CAPWNR 487 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV-cApSNs 487 (651)
..+++.||+|+||| +|++.+...+.+ .+.+|++ ++.+..
T Consensus 101 ~vi~lvG~~GvGKT-----TtaaKLA~~l~~--~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKT-----TTCTKLAYYYQR--KGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHH--CCCCEEEEcCcccc
Confidence 45789999999999 888877765443 3667654 454543
No 271
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.59 E-value=0.23 Score=55.73 Aligned_cols=40 Identities=10% Similarity=0.002 Sum_probs=27.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE-ccCh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWN 486 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc-ApSN 486 (651)
..+++.||+|+||| +|++.+...+.....+.+|.+. +.+.
T Consensus 222 ~~i~~vGptGvGKT-----Tt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGPTGVGKT-----TTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECCCCCCHH-----HHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 36789999999999 8888877666512235666554 4443
No 272
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.018 Score=63.05 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=32.0
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRA 508 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv 508 (651)
-+|++|||||||| .|+.||.- ++ + +|+=|..+-.+..+..- ...+++|+
T Consensus 247 gvLm~GPPGTGKT------lLAKAvAT--Ec--~-----tTFFNVSsstltSKwRG--eSEKlvRl 295 (491)
T KOG0738|consen 247 GVLMVGPPGTGKT------LLAKAVAT--EC--G-----TTFFNVSSSTLTSKWRG--ESEKLVRL 295 (491)
T ss_pred eeeeeCCCCCcHH------HHHHHHHH--hh--c-----CeEEEechhhhhhhhcc--chHHHHHH
Confidence 4799999999999 77777753 22 1 45666666666666642 23355554
No 273
>CHL00181 cbbX CbbX; Provisional
Probab=94.49 E-value=0.022 Score=60.40 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=20.7
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
+++++|||||||| ++|.++.+.+..
T Consensus 61 ~ill~G~pGtGKT------~lAr~la~~~~~ 85 (287)
T CHL00181 61 HMSFTGSPGTGKT------TVALKMADILYK 85 (287)
T ss_pred eEEEECCCCCCHH------HHHHHHHHHHHH
Confidence 4789999999999 888888776643
No 274
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.42 E-value=0.14 Score=58.20 Aligned_cols=134 Identities=16% Similarity=0.088 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-------CCCeEEEEccChhhHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-------PKSRILICAPWNRTCDKLME 494 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-------~~~rILVcApSNsAaD~l~~ 494 (651)
..++.-|++||-.+|+ ..-++|..+.||||| ..-+--|.|.+... .+.--||.+||..-|-++-+
T Consensus 158 ~~pTsVQkq~IP~lL~---grD~lV~aQTGSGKT-----LAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~ 229 (708)
T KOG0348|consen 158 SAPTSVQKQAIPVLLE---GRDALVRAQTGSGKT-----LAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYE 229 (708)
T ss_pred CccchHhhcchhhhhc---CcceEEEcCCCCccc-----HHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHH
Confidence 4678899999999998 346799999999999 55444455554432 34457999999977765544
Q ss_pred HHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh-cccceEeeehhcc-hhhhh-cCCCCCCccEEE
Q 006311 495 CLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSS-FRLHN-QGITAGHFSHIF 571 (651)
Q Consensus 495 rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L-~~~rIVvtT~ssa-~~l~~-~~~~~~~F~~Ii 571 (651)
-+-+.+.. ..|+ || ...+.+.. +.-.+..| ...+|+|+|..-. .++.+ ..+......+||
T Consensus 230 ~~qKLl~~---------~hWI--VP-----g~lmGGEk-kKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 230 TVQKLLKP---------FHWI--VP-----GVLMGGEK-KKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred HHHHHhcC---------ceEE--ee-----ceeecccc-cccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 33331111 1110 11 11111111 11122233 4678999987522 22222 223333467999
Q ss_pred EecCCCCCh
Q 006311 572 LIDASSATE 580 (651)
Q Consensus 572 IDEAsQatE 580 (651)
+|||-..+|
T Consensus 293 lDEaDrlle 301 (708)
T KOG0348|consen 293 LDEADRLLE 301 (708)
T ss_pred ecchhHHHh
Confidence 999977665
No 275
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.41 E-value=0.034 Score=60.62 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=18.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
-++|+|||||||| +++.++..-+
T Consensus 158 gvLL~GppGtGKT------~lakaia~~l 180 (364)
T TIGR01242 158 GVLLYGPPGTGKT------LLAKAVAHET 180 (364)
T ss_pred eEEEECCCCCCHH------HHHHHHHHhC
Confidence 3899999999999 7777775533
No 276
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.40 E-value=0.088 Score=53.57 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=40.0
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.+..+|++ .....++|.|||||||| +.....+...+++ +.+++.++-.+.. +.+.+++..
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt-----~l~~~~~~~~~~~--g~~~~y~~~e~~~-~~~~~~~~~ 74 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKS-----VLSQQFVYGALKQ--GKKVYVITTENTS-KSYLKQMES 74 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChH-----HHHHHHHHHHHhC--CCEEEEEEcCCCH-HHHHHHHHH
Confidence 34555643 34678999999999999 4444444554553 7899988887655 456555543
No 277
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.39 E-value=0.4 Score=56.27 Aligned_cols=131 Identities=13% Similarity=0.105 Sum_probs=77.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCc---chhhhccccccccC
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS---EMFRANAAFREADG 517 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~---~i~Rv~a~~R~~~~ 517 (651)
+.-.++.=|==.||| ..++-.|..++...++.+|++.||...+++.+.+++...+... +.++.
T Consensus 254 qk~tVflVPRR~GKT-----wivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~--------- 319 (738)
T PHA03368 254 QRATVFLVPRRHGKT-----WFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDH--------- 319 (738)
T ss_pred ccceEEEecccCCch-----hhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheee---------
Confidence 445566668889999 7777445445555689999999999999999999998733211 11111
Q ss_pred CcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH--hHHHHHhccccCCC
Q 006311 518 VSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP--ETMIVLGNLANENT 595 (651)
Q Consensus 518 v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp--E~LIpL~~la~~~~ 595 (651)
+.. +.-.+..+. =...+|.+.++...+. .+...||.+|||||.-.... ++++|+. ...++
T Consensus 320 vkG--------e~I~i~f~n---G~kstI~FaSarntNs-----iRGqtfDLLIVDEAqFIk~~al~~ilp~l--~~~n~ 381 (738)
T PHA03368 320 VKG--------ETISFSFPD---GSRSTIVFASSHNTNG-----IRGQDFNLLFVDEANFIRPDAVQTIMGFL--NQTNC 381 (738)
T ss_pred ecC--------cEEEEEecC---CCccEEEEEeccCCCC-----ccCCcccEEEEechhhCCHHHHHHHHHHH--hccCc
Confidence 000 000111110 0112555554422111 23336999999999877654 3455554 34477
Q ss_pred eEEEEeCC
Q 006311 596 RVIVTGAP 603 (651)
Q Consensus 596 rvVLaGD~ 603 (651)
++|++.-+
T Consensus 382 k~I~ISS~ 389 (738)
T PHA03368 382 KIIFVSST 389 (738)
T ss_pred cEEEEecC
Confidence 88888644
No 278
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.35 E-value=0.056 Score=56.38 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=33.7
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
....++|.|||||||| ....+.+.+.+++ +.+++..+.-. ..+.+.+++
T Consensus 35 ~gs~~lI~G~pGtGKT-----~l~~qf~~~~a~~--Ge~vlyis~Ee-~~~~~~~~l 83 (259)
T TIGR03878 35 AYSVINITGVSDTGKS-----LMVEQFAVTQASR--GNPVLFVTVES-PANFVYTSL 83 (259)
T ss_pred CCcEEEEEcCCCCCHH-----HHHHHHHHHHHhC--CCcEEEEEecC-CchHHHHHH
Confidence 4568999999999999 5555555555553 77888887764 345555444
No 279
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=94.31 E-value=0.23 Score=60.74 Aligned_cols=124 Identities=13% Similarity=0.132 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|++|+..+-. ..-+++..|.|+||| ++---||.+.+++ +.|+..++|.-+-..+.-.++...+.
T Consensus 118 F~LD~fQ~~a~~~Ler---~esVlV~ApTssGKT-----vVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 118 FELDPFQQEAIAILER---GESVLVCAPTSSGKT-----VVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred CCcCHHHHHHHHHHhC---CCcEEEEccCCCCcc-----hHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhh
Confidence 5799999999988776 557899999999999 5544556655654 78899999988888877777765322
Q ss_pred Cc-chhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-CCCCCccEEEEecCCCCC
Q 006311 502 AS-EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~-~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDEAsQat 579 (651)
+. ++ +..+.++.- .-..+.++|.|+-....+...+ .....-.+||.||.--+.
T Consensus 188 dv~~~-------------------vGL~TGDv~------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~ 242 (1041)
T COG4581 188 DVADM-------------------VGLMTGDVS------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIG 242 (1041)
T ss_pred hhhhh-------------------ccceeccee------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecc
Confidence 11 11 111112111 1145677777776554333222 222246899999986544
Q ss_pred h
Q 006311 580 E 580 (651)
Q Consensus 580 E 580 (651)
+
T Consensus 243 D 243 (1041)
T COG4581 243 D 243 (1041)
T ss_pred c
Confidence 3
No 280
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.30 E-value=0.064 Score=58.08 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..++++-..+|...+.. ..+++|.|||||||| |+++.+...+.
T Consensus 47 y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKT------tla~~lA~~l~ 89 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY--DRRVMVQGYHGTGKS------THIEQIAARLN 89 (327)
T ss_pred ccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHH------HHHHHHHHHHC
Confidence 46788888888877753 568999999999999 77777776665
No 281
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.30 E-value=0.068 Score=56.67 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=22.5
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.-..+|++||||.||| |++.+|..-+.
T Consensus 51 ~lDHvLl~GPPGlGKT------TLA~IIA~Emg 77 (332)
T COG2255 51 ALDHVLLFGPPGLGKT------TLAHIIANELG 77 (332)
T ss_pred CcCeEEeeCCCCCcHH------HHHHHHHHHhc
Confidence 4578999999999999 99998876443
No 282
>PRK05642 DNA replication initiation factor; Validated
Probab=94.28 E-value=0.077 Score=54.51 Aligned_cols=37 Identities=11% Similarity=-0.115 Sum_probs=24.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
..+++|+||+||||| +. +.++...+.. .+.+++..+.
T Consensus 45 ~~~l~l~G~~G~GKT-----HL-l~a~~~~~~~-~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRS-----HL-LQAACLRFEQ-RGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHH-----HH-HHHHHHHHHh-CCCcEEEeeH
Confidence 367899999999999 55 4444433332 3567766553
No 283
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.23 E-value=0.16 Score=55.06 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCCccEEEEecCCCCChHhHHHHHhcccc--CCCeEEEEeC-CCCCCccccCh
Q 006311 564 AGHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGA-PHNSPSRVRSD 613 (651)
Q Consensus 564 ~~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~rvVLaGD-~~QL~PvV~S~ 613 (651)
.|.+.++|||||-.+++..+=--|..+-. .++.+||+.+ +.+|.|+|+|.
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 35688999999988887654443443332 4577888776 57999999875
No 284
>PF05729 NACHT: NACHT domain
Probab=94.23 E-value=0.061 Score=50.32 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=21.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS 474 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~ 474 (651)
+++|.|+||+||| +++..++.++....
T Consensus 2 ~l~I~G~~G~GKS-----tll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKS-----TLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChH-----HHHHHHHHHHHhcC
Confidence 6799999999999 77777676666653
No 285
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.23 E-value=0.051 Score=62.15 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=20.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+.-+||+|||||||| +++.++..-+.
T Consensus 216 p~GILLyGPPGTGKT------~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKT------LIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHH------HHHHHHHHhhc
Confidence 345899999999999 67777766544
No 286
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.17 E-value=0.027 Score=50.71 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=18.2
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++|.||||+||| |++..+.+.+
T Consensus 2 I~I~G~~gsGKS------T~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKS------TLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHH------HHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHH
Confidence 689999999999 7777776644
No 287
>PRK04328 hypothetical protein; Provisional
Probab=94.15 E-value=0.086 Score=54.64 Aligned_cols=59 Identities=10% Similarity=-0.032 Sum_probs=39.2
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
.+..+|++ .....++|.|||||||| ....+.+.+-++. +.++++++......+ +.++..
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT-----~l~~~fl~~~~~~--ge~~lyis~ee~~~~-i~~~~~ 71 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKS-----IFSQQFLWNGLQM--GEPGVYVALEEHPVQ-VRRNMR 71 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHH-----HHHHHHHHHHHhc--CCcEEEEEeeCCHHH-HHHHHH
Confidence 34555643 34568999999999999 5555555555554 778888886665554 555544
No 288
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.11 E-value=0.095 Score=56.00 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEc
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICA 483 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcA 483 (651)
.++++|.+.+..++.. ....+|.||+|+||| |++.++...+.. .+..||++.-
T Consensus 116 ~~~~~~~~~L~~~v~~--~~~ilI~G~tGSGKT------Tll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 116 IMTAAQRDVLREAVLA--RKNILVVGGTGSGKT------TLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred CCCHHHHHHHHHHHHc--CCeEEEECCCCCCHH------HHHHHHHHHhhccCCCceEEEEC
Confidence 4678888888887763 567899999999999 555666555543 3467776654
No 289
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.10 E-value=0.094 Score=56.70 Aligned_cols=58 Identities=7% Similarity=-0.034 Sum_probs=37.3
Q ss_pred HHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 431 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 431 AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
++..+|+ + .+...+.|+|||||||| +....++.+..+. +.+++....-++.-...+++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKT-----tLaL~~~~~~~~~--g~~v~yId~E~~~~~~~a~~ 102 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKT-----TLALHAIAEAQKA--GGTAAFIDAEHALDPVYARK 102 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCcEEEEcccchhHHHHHHH
Confidence 4556665 3 34568999999999999 5555666665553 66776665555444443333
No 290
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=94.10 E-value=0.099 Score=58.72 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh----CCCCeEEEEccChhhHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----SPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~----~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
..+++-|...+.-+|.+ .=++...-.|||||+ -.++-||..+++. +.+..++||+||..-|-++...+.
T Consensus 103 ~~MT~VQ~~ti~pll~g---kDvl~~AKTGtGKTl----AFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak 175 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEG---KDVLAAAKTGTGKTL----AFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAK 175 (543)
T ss_pred cchhHHHHhhcCccCCC---ccceeeeccCCCcee----eehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHH
Confidence 47888999998888763 267889999999992 2344555555543 245689999999987777665544
Q ss_pred hhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchh-hhh-cCCCCCCccEEEEecC
Q 006311 498 KDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHN-QGITAGHFSHIFLIDA 575 (651)
Q Consensus 498 ~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~-l~~-~~~~~~~F~~IiIDEA 575 (651)
..+....-++++. .+.+..+..-....-..++|+|+|..-.-. +-+ .++-..+..+.|||||
T Consensus 176 ~Ll~~h~~~~v~~----------------viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 176 ELLKYHESITVGI----------------VIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred HHHhhCCCcceEE----------------EeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 3111110011100 011111211111223467889988763321 111 1121223468899999
Q ss_pred CCCCh
Q 006311 576 SSATE 580 (651)
Q Consensus 576 sQatE 580 (651)
-..+|
T Consensus 240 DrlLd 244 (543)
T KOG0342|consen 240 DRLLD 244 (543)
T ss_pred hhhhh
Confidence 87665
No 291
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.03 E-value=0.095 Score=56.85 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=26.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...++++|||||||| +.+..+..+++.. +.+|+..+
T Consensus 183 ~~~Lll~G~~GtGKT-----hLa~aIa~~l~~~--g~~V~y~t 218 (329)
T PRK06835 183 NENLLFYGNTGTGKT-----FLSNCIAKELLDR--GKSVIYRT 218 (329)
T ss_pred CCcEEEECCCCCcHH-----HHHHHHHHHHHHC--CCeEEEEE
Confidence 467999999999999 6555545555543 67777665
No 292
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.12 Score=54.08 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=13.1
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
+.=+|++||||||||
T Consensus 189 prgvllygppg~gkt 203 (408)
T KOG0727|consen 189 PRGVLLYGPPGTGKT 203 (408)
T ss_pred CcceEEeCCCCCcHH
Confidence 345899999999999
No 293
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.99 E-value=0.055 Score=60.10 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 418 PYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 418 ~~~~~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
.|.+..--+.|++.+..++.. ..+.-++|+|||||||| +++.++...
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT------~LAkalA~~ 202 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKT------MLAKAVAHH 202 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHH------HHHHHHHHh
Confidence 444445566777777765531 12446899999999999 777777653
No 294
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.98 E-value=0.32 Score=40.86 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=23.7
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.++.|.+|+||| |++..+.+.++. .+.+++++.
T Consensus 2 ~~~~g~~G~Gkt------t~~~~l~~~l~~-~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKT------TLAANLAAALAK-RGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHH------HHHHHHHHHHHH-CCCeEEEEC
Confidence 468899999999 555555555554 478888887
No 295
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.97 E-value=0.073 Score=53.75 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 432 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 432 V~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..++.+ .....++|.|||||||| ....+.+..-+++ -+.+++.++..... +.+.+++..
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT-----~l~~q~l~~~~~~-~ge~vlyvs~ee~~-~~l~~~~~s 69 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKT-----TLALQFLYNGLKN-FGEKVLYVSFEEPP-EELIENMKS 69 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHH-----HHHHHHHHHHHHH-HT--EEEEESSS-H-HHHHHHHHT
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcH-----HHHHHHHHHhhhh-cCCcEEEEEecCCH-HHHHHHHHH
Confidence 3455533 35678999999999999 5555555554442 16678877765544 666666654
No 296
>PHA02244 ATPase-like protein
Probab=93.95 E-value=0.066 Score=58.92 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..|++|.|||||||| ++++++.+.+
T Consensus 119 ~~PVLL~GppGtGKT------tLA~aLA~~l 143 (383)
T PHA02244 119 NIPVFLKGGAGSGKN------HIAEQIAEAL 143 (383)
T ss_pred CCCEEEECCCCCCHH------HHHHHHHHHh
Confidence 668999999999999 7888877654
No 297
>PRK05973 replicative DNA helicase; Provisional
Probab=93.90 E-value=0.11 Score=54.02 Aligned_cols=51 Identities=8% Similarity=-0.102 Sum_probs=38.1
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
....++|.|+||+||| ....+.+....++ +.++++.+.--+ .+.+.+|+..
T Consensus 63 ~Gsl~LIaG~PG~GKT-----~lalqfa~~~a~~--Ge~vlyfSlEes-~~~i~~R~~s 113 (237)
T PRK05973 63 PGDLVLLGARPGHGKT-----LLGLELAVEAMKS--GRTGVFFTLEYT-EQDVRDRLRA 113 (237)
T ss_pred CCCEEEEEeCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEEEeCC-HHHHHHHHHH
Confidence 3568999999999999 6666666666654 778888877665 4677777764
No 298
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.90 E-value=0.28 Score=58.02 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 424 LDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
-.-.|..|+..+... .+....+|.|-.||||| .|++.++.+ .+..+||.||....|+.+...|...++
T Consensus 10 ~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt-----~~~a~~~~~-----~~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKT-----FTMANVIAQ-----VNRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred CChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHH-----HHHHHHHHH-----hCCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 356799999988765 23346679999999999 998876653 255799999999999999999988776
Q ss_pred Ccchhhh
Q 006311 502 ASEMFRA 508 (651)
Q Consensus 502 ~~~i~Rv 508 (651)
+..+.-+
T Consensus 80 ~~~V~~f 86 (655)
T TIGR00631 80 ENAVEYF 86 (655)
T ss_pred CCeEEEE
Confidence 6544433
No 299
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.89 E-value=0.12 Score=50.71 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=31.9
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.+.|++|+|++||||+ .+|.+|.+.-.+ .....+..--+.-..+.+-..|.-
T Consensus 21 ~~~pVlI~GE~GtGK~------~lA~~IH~~s~r-~~~pfi~vnc~~~~~~~~e~~LFG 72 (168)
T PF00158_consen 21 SDLPVLITGETGTGKE------LLARAIHNNSPR-KNGPFISVNCAALPEELLESELFG 72 (168)
T ss_dssp STS-EEEECSTTSSHH------HHHHHHHHCSTT-TTS-EEEEETTTS-HHHHHHHHHE
T ss_pred CCCCEEEEcCCCCcHH------HHHHHHHHhhhc-ccCCeEEEehhhhhcchhhhhhhc
Confidence 4689999999999999 888888763332 233444443444444555555653
No 300
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.88 E-value=0.087 Score=53.16 Aligned_cols=48 Identities=10% Similarity=0.154 Sum_probs=32.1
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 485 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS 485 (651)
.+..++++ .....++|.|||||||| ....+++.+..+. +.+++.++--
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT-----~l~~~la~~~~~~--~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKT-----NICLQLAVEAAKN--GKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEECC
Confidence 35556643 23458899999999999 6666666665554 5666666544
No 301
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.17 Score=59.83 Aligned_cols=119 Identities=12% Similarity=0.051 Sum_probs=69.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC----CCeEEEEccChhhHHHHHHHHHhhCCCcchhhhcccccccc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP----KSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREAD 516 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~----~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~ 516 (651)
++.++|.|-.|+||| +-+=..+++.--... +.-|-|+-|-..||=.+++|....+... --.+++.-|...
T Consensus 271 n~vvIIcGeTGsGKT-----TQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYqIRfd~ 344 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKT-----TQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQIRFDG 344 (1172)
T ss_pred CCeEEEecCCCCCcc-----ccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEEEEecc
Confidence 789999999999999 666555544322111 3478999999999999999998743320 000111111111
Q ss_pred CCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC-CChHhHHHHH
Q 006311 517 GVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS-ATEPETMIVL 587 (651)
Q Consensus 517 ~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ-atEpE~LIpL 587 (651)
++. ...+|-+.|-...-+-...+|--..++.||||||.- ..-.+.||-+
T Consensus 345 ti~----------------------e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGm 394 (1172)
T KOG0926|consen 345 TIG----------------------EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGM 394 (1172)
T ss_pred ccC----------------------CCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHH
Confidence 111 123344444333322223334445699999999964 3445566554
No 302
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.84 E-value=0.089 Score=52.76 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=31.3
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.+..++++ .....++|.|+|||||| +...+.+.+.... +.++++.+
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT-----~l~~~~a~~~~~~--g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKT-----NIAIQLAVETAGQ--GKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEE
Confidence 45566643 23567999999999999 6666666655553 66776654
No 303
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.13 Score=59.13 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=27.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...+.|.||.|+||| +|++.+...+.....+.+|.+.+
T Consensus 350 G~vIaLVGPtGvGKT-----TtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKT-----TTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHH-----HHHHHHHHHHHHhcCCCceEEEe
Confidence 457889999999999 77777776655543345665543
No 304
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.82 E-value=0.076 Score=61.11 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 427 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 427 ~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...+++...+......+++|+|||||||| ++|.++.+..+
T Consensus 72 ~~i~~l~~al~~~~~~~vLi~Ge~GtGKt------~lAr~i~~~~~ 111 (531)
T TIGR02902 72 EGIKALKAALCGPNPQHVIIYGPPGVGKT------AAARLVLEEAK 111 (531)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHH------HHHHHHHHHhh
Confidence 34444444443344678999999999999 88888877554
No 305
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.81 E-value=0.095 Score=60.33 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC----CCCeEEEEccChh
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----PKSRILICAPWNR 487 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~----~~~rILVcApSNs 487 (651)
.+-.+|-++++. +.+.+.+|||.|||||| +.-.+.+..++... ..+.|||.+|--.
T Consensus 212 TIQkEQneIIR~----ek~~ilVVQGaAGSGKT-----tiALHRvAyLlY~~R~~l~~k~vlvl~PN~v 271 (747)
T COG3973 212 TIQKEQNEIIRF----EKNKILVVQGAAGSGKT-----TIALHRVAYLLYGYRGPLQAKPVLVLGPNRV 271 (747)
T ss_pred HhhHhHHHHHhc----cCCCeEEEecCCCCCch-----hHHHHHHHHHHhccccccccCceEEEcCcHH
Confidence 456788888865 45689999999999999 55556666555543 2345999999654
No 306
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.81 E-value=0.098 Score=54.88 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
.+.++|.+++..++.. ..+.++|.||+|+||| +++..++..+.. +..+|+..
T Consensus 63 g~~~~~~~~l~~~~~~-~~GlilisG~tGSGKT-----T~l~all~~i~~--~~~~iiti 114 (264)
T cd01129 63 GLKPENLEIFRKLLEK-PHGIILVTGPTGSGKT-----TTLYSALSELNT--PEKNIITV 114 (264)
T ss_pred CCCHHHHHHHHHHHhc-CCCEEEEECCCCCcHH-----HHHHHHHhhhCC--CCCeEEEE
Confidence 4688899999888753 3568999999999999 666555544322 34566554
No 307
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.78 E-value=0.1 Score=51.91 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=27.8
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccCh
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN 486 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSN 486 (651)
....+.|.|||||||| ....+++....+. +.+++..+..+
T Consensus 11 ~g~i~~i~G~~GsGKT-----~l~~~~~~~~~~~--g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKT-----NICMILAVNAARQ--GKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHH-----HHHHHHHHHHHhC--CCeEEEEECCC
Confidence 3568999999999999 5555555555553 56666666554
No 308
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.78 E-value=0.53 Score=50.75 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc-CCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN-ENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~-~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.+||||||-.+++..+=--|..+-. +++.+||+. ++.+|.|.|+|.
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SR 173 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSR 173 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhh
Confidence 4588999999988776543111221211 256777776 888999998875
No 309
>PRK06620 hypothetical protein; Validated
Probab=93.77 E-value=0.061 Score=54.63 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHhccC--C--CceEEeCcCCCCCCCCchhHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEG--Q--SPYLLEGPLCNNFVLSKTGNVVREAV 467 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~--~--~p~LI~GPPGTGKT~s~~~~TlveaI 467 (651)
|..=..|+..+....+ + .+++|+||||+||| +++.++
T Consensus 24 N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKT------hLl~a~ 64 (214)
T PRK06620 24 NDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKT------YLTKIW 64 (214)
T ss_pred HHHHHHHHHHHHHccccCCCcceEEEECCCCCCHH------HHHHHH
Confidence 5444445554443211 2 45899999999999 555553
No 310
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.76 E-value=0.13 Score=52.13 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=37.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
...++|.|+||+||| ....+++.+.... .+.+++..+.-..+.+ +.+|+.
T Consensus 13 G~l~lI~G~~G~GKT-----~~~~~~~~~~~~~-~g~~vly~s~E~~~~~-~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKT-----AFALNIAENIAKK-QGKPVLFFSLEMSKEQ-LLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHH-----HHHHHHHHHHHHh-CCCceEEEeCCCCHHH-HHHHHH
Confidence 458999999999999 7777777776664 4789999998776664 445554
No 311
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.74 E-value=0.1 Score=53.61 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=33.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
...++|.|||||||| +....++...++. +.+++..+...+.. .+.+..
T Consensus 24 g~~~~i~G~~G~GKT-----tl~~~~~~~~~~~--g~~~~yi~~e~~~~-~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKS-----ILSQRLAYGFLQN--GYSVSYVSTQLTTT-EFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHH-----HHHHHHHHHHHhC--CCcEEEEeCCCCHH-HHHHHH
Confidence 458999999999999 4445666666654 67777777655554 444444
No 312
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=93.73 E-value=0.096 Score=66.56 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=64.2
Q ss_pred EeCcCCCCCCCCchhHHHH-HHHHHHHHhC----------CCCeEEEEccChhhHHHHHHHHHhhCCCc--chhhhcccc
Q 006311 446 LEGPLCNNFVLSKTGNVVR-EAVLQIRRRS----------PKSRILICAPWNRTCDKLMECLMKDIPAS--EMFRANAAF 512 (651)
Q Consensus 446 I~GPPGTGKT~s~~~~Tlv-eaI~qll~~~----------~~~rILVcApSNsAaD~l~~rL~~~l~~~--~i~Rv~a~~ 512 (651)
|..|.||||| .+-. -++.++++.. .+.++|+.+|+.+-+..+.+++...+.+. ...|++...
T Consensus 1 V~APTGSGKT-----LAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~ 75 (1490)
T PRK09751 1 VIAPTGSGKT-----LAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETE 75 (1490)
T ss_pred CcCCCCcHHH-----HHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 4579999999 4432 2344444421 24689999999999998888875411110 000111000
Q ss_pred ccccCCcHHHHHhhhccccccCCChhhhh-cccceEeeehhcchhhhhcCC--CCCCccEEEEecCCCCCh
Q 006311 513 READGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLHNQGI--TAGHFSHIFLIDASSATE 580 (651)
Q Consensus 513 R~~~~v~~~l~~y~~~~~~~f~~p~~~~L-~~~rIVvtT~ssa~~l~~~~~--~~~~F~~IiIDEAsQatE 580 (651)
. .+. .....++.-.......+ ...+|+|+|..+...+...+. ...+.++|||||+-...+
T Consensus 76 -----~--~i~-V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g 138 (1490)
T PRK09751 76 -----V--NLR-VGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAG 138 (1490)
T ss_pred -----C--ceE-EEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcc
Confidence 0 000 00001111000001122 356899999998766532211 224578999999966554
No 313
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.73 E-value=0.085 Score=51.46 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=36.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC--------CCCeEEEEccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--------PKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~--------~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
....+|.||||+||| +.+.+++.++.... .+.+||+...-+. .+.+.+|+..
T Consensus 32 g~l~~i~g~~g~GKT-----~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~ 91 (193)
T PF13481_consen 32 GELTLIAGPPGSGKT-----TLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRA 91 (193)
T ss_dssp TSEEEEEECSTSSHH-----HHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHH-----HHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHH
Confidence 458999999999999 88888888777521 3679999998888 4456677765
No 314
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.71 E-value=0.067 Score=60.15 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=19.8
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.-++|+|||||||| +++.++...+.
T Consensus 218 ~gVLL~GPPGTGKT------~LAraIA~el~ 242 (438)
T PTZ00361 218 KGVILYGPPGTGKT------LLAKAVANETS 242 (438)
T ss_pred cEEEEECCCCCCHH------HHHHHHHHhhC
Confidence 34899999999999 77887776443
No 315
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.63 E-value=0.1 Score=51.46 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 481 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV 481 (651)
..++++|.+.+...+.. ...++|.||+|+||| |+..++..++. +..++..
T Consensus 8 g~~~~~~~~~l~~~v~~--g~~i~I~G~tGSGKT------Tll~aL~~~i~--~~~~~i~ 57 (186)
T cd01130 8 GTFSPLQAAYLWLAVEA--RKNILISGGTGSGKT------TLLNALLAFIP--PDERIIT 57 (186)
T ss_pred CCCCHHHHHHHHHHHhC--CCEEEEECCCCCCHH------HHHHHHHhhcC--CCCCEEE
Confidence 46789999999988873 568999999999999 66676766654 3455543
No 316
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.59 E-value=0.14 Score=55.56 Aligned_cols=52 Identities=8% Similarity=0.009 Sum_probs=34.9
Q ss_pred HHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhH
Q 006311 431 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTC 489 (651)
Q Consensus 431 AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAa 489 (651)
++..+|+ + ++...+.|+|||||||| +....++.+..+. +.+++....-++.-
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKT-----tLal~~~~~~~~~--g~~~vyId~E~~~~ 96 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKT-----TLALHAIAEAQKL--GGTVAFIDAEHALD 96 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCCEEEECccccHH
Confidence 4556666 3 44568999999999999 5555666655553 56666666554433
No 317
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=93.52 E-value=0.16 Score=59.89 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCce-EEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPY-LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~-LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..|-+.|.--|....-......- ++---=|-||| .-+++....+.+......=||++||- ..++-.+.+.+..
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKT-----iQvIaFlayLkq~g~~gpHLVVvPsS-TleNWlrEf~kwC 471 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKT-----IQVIAFLAYLKQIGNPGPHLVVVPSS-TLENWLREFAKWC 471 (941)
T ss_pred CcccchhhhhHHHHHHHHHccccceehhhccCcch-----hHHHHHHHHHHHcCCCCCcEEEecch-hHHHHHHHHHHhC
Confidence 46888898888765432112221 55568899999 66665555444443344556777764 5677777787766
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh--cCCCCCCccEEEEecCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN--QGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~--~~~~~~~F~~IiIDEAsQa 578 (651)
|..++.-.+...-+ ..+++.+.. ..-..++|++||+..+..-.. .-+....|++||.||+...
T Consensus 472 Psl~Ve~YyGSq~E----R~~lR~~i~-----------~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmL 536 (941)
T KOG0389|consen 472 PSLKVEPYYGSQDE----RRELRERIK-----------KNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHML 536 (941)
T ss_pred CceEEEeccCcHHH----HHHHHHHHh-----------ccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhh
Confidence 66665554443211 011111111 011367899999986653211 1134557999999999653
Q ss_pred ChH--hHHHHHhccccCCCeEEEEeCCCC
Q 006311 579 TEP--ETMIVLGNLANENTRVIVTGAPHN 605 (651)
Q Consensus 579 tEp--E~LIpL~~la~~~~rvVLaGD~~Q 605 (651)
-.. |-.--|... ..+-|+.|.|=|-|
T Consensus 537 KN~~SeRy~~LM~I-~An~RlLLTGTPLQ 564 (941)
T KOG0389|consen 537 KNRTSERYKHLMSI-NANFRLLLTGTPLQ 564 (941)
T ss_pred hccchHHHHHhccc-cccceEEeeCCccc
Confidence 222 212222211 24569999999999
No 318
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=93.49 E-value=0.11 Score=60.44 Aligned_cols=37 Identities=32% Similarity=0.320 Sum_probs=28.9
Q ss_pred CccEEEEecCCCCChHhHHHHHhcccc---CCCeEEEEeC
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVTGA 602 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~---~~~rvVLaGD 602 (651)
..++||+|||.-|.+++.-.-+-.+.+ ++.-+|-+|=
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~H 572 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEecc
Confidence 478999999999999998887765443 4567777774
No 319
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.48 E-value=0.08 Score=51.14 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=23.4
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.++.||||+||| ++...+...+.+. +.+|+++.
T Consensus 3 ~~~~G~~G~GKT-----t~~~~la~~~~~~--g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKT-----TTAAKLALYLKKK--GKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHH-----HHHHHHHHHHHHC--CCcEEEEE
Confidence 578999999999 6666665554443 66776544
No 320
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.42 E-value=0.51 Score=54.79 Aligned_cols=133 Identities=8% Similarity=0.003 Sum_probs=83.1
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHHHHhhhc
Q 006311 449 PLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLV 528 (651)
Q Consensus 449 PPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~ 528 (651)
|=--||| ..++.+|.-++....+-+|..+||-..++.-+.+++... .-|.....+. .... .
T Consensus 210 PRRHGKT-----Wf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~-----lrrwF~~~~v-i~~k--------~ 270 (668)
T PHA03372 210 PRRHGKT-----WFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFR-----CRRMFPRKHT-IENK--------D 270 (668)
T ss_pred cccCCce-----ehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHH-----HhhhcCccce-eeec--------C
Confidence 8899999 888888888888778999999999999998888887531 1121111111 1110 0
Q ss_pred cccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHh-ccccCCCeEEEEeCC---C
Q 006311 529 ERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLG-NLANENTRVIVTGAP---H 604 (651)
Q Consensus 529 ~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~-~la~~~~rvVLaGD~---~ 604 (651)
+.-.|..|. .+..++.++|..... ++...|+.+|||||.-.. |+++..|. .++.+++++|.+--+ +
T Consensus 271 ~tI~~s~pg----~Kst~~fasc~n~Ns-----iRGQ~fnll~VDEA~FI~-~~a~~tilgfm~q~~~KiIfISS~Nsg~ 340 (668)
T PHA03372 271 NVISIDHRG----AKSTALFASCYNTNS-----IRGQNFHLLLVDEAHFIK-KDAFNTILGFLAQNTTKIIFISSTNTTN 340 (668)
T ss_pred cEEEEecCC----CcceeeehhhccCcc-----ccCCCCCEEEEehhhccC-HHHHHHhhhhhcccCceEEEEeCCCCCC
Confidence 111233331 224456666664432 444579999999997655 44443333 245678899999555 5
Q ss_pred CCCccc
Q 006311 605 NSPSRV 610 (651)
Q Consensus 605 QL~PvV 610 (651)
|-...+
T Consensus 341 ~sTSfL 346 (668)
T PHA03372 341 DATCFL 346 (668)
T ss_pred ccchHH
Confidence 554544
No 321
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.40 E-value=0.11 Score=49.00 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=33.8
Q ss_pred HHHHHHHHHhc--------cCCCceE--EeCcCCCCCCCCchhHHHHHHHH-HHHHhC-CCCeE--EEE---ccChhhHH
Q 006311 428 SNSAVHQILSF--------EGQSPYL--LEGPLCNNFVLSKTGNVVREAVL-QIRRRS-PKSRI--LIC---APWNRTCD 490 (651)
Q Consensus 428 Q~~AV~~iL~~--------~~~~p~L--I~GPPGTGKT~s~~~~TlveaI~-qll~~~-~~~rI--LVc---ApSNsAaD 490 (651)
|..|++.+++. ....|.+ .+|||||||| .+ +++|. .+++.. ...-| .+. -|.+.-++
T Consensus 30 Qhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn-----~v-~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~ 103 (127)
T PF06309_consen 30 QHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKN-----FV-SRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVD 103 (127)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHH-----HH-HHHHHHHHHhcccCCCceeeecccccCCCchHHH
Confidence 66565555542 1233444 8999999999 44 44443 334431 11112 121 23556666
Q ss_pred HHHHHHHh
Q 006311 491 KLMECLMK 498 (651)
Q Consensus 491 ~l~~rL~~ 498 (651)
.+-+.|..
T Consensus 104 ~Yk~~L~~ 111 (127)
T PF06309_consen 104 EYKEQLKS 111 (127)
T ss_pred HHHHHHHH
Confidence 66666654
No 322
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.36 E-value=0.07 Score=57.97 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=27.2
Q ss_pred HHHHHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 428 SNSAVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 428 Q~~AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
|..+++.++- . .+..-+|+.|||||||| |++.++..++
T Consensus 13 q~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT------~lar~la~ll 53 (334)
T PRK13407 13 QEEMKQAMVLTAIDPGIGGVLVFGDRGTGKS------TAVRALAALL 53 (334)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEcCCCCCHH------HHHHHHHHHC
Confidence 5555554332 1 23357999999999999 8888888776
No 323
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.35 E-value=0.16 Score=57.31 Aligned_cols=64 Identities=9% Similarity=0.152 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeE-EEEccChhhHHHHHH
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRI-LICAPWNRTCDKLME 494 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rI-LVcApSNsAaD~l~~ 494 (651)
-..+...+.+...+. .....+++|||||||| +++..+...+... ...++ .|+.+.+-+...+++
T Consensus 178 ~i~e~~le~l~~~L~--~~~~iil~GppGtGKT------~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 178 FIPETTIETILKRLT--IKKNIILQGPPGVGKT------FVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred cCCHHHHHHHHHHHh--cCCCEEEECCCCCCHH------HHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 345555566655554 2568899999999999 6666666655421 12233 455555555444443
No 324
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.34 E-value=0.12 Score=55.61 Aligned_cols=36 Identities=6% Similarity=0.006 Sum_probs=26.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...++|+|||||||| +.++.+..++.+. +.++.++.
T Consensus 156 ~~gl~L~G~~G~GKT-----hLa~Aia~~l~~~--g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKS-----YLLAAIANELAKK--GVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHH-----HHHHHHHHHHHHc--CCCEEEEE
Confidence 347899999999999 6666666666653 56665553
No 325
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.27 E-value=0.11 Score=55.82 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHhccC-CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 423 KLDSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~-~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
--++...+.+...+...+ +..+|++||||+||| +++.++.+.+.+
T Consensus 17 ig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt------~~a~~la~~l~~ 62 (355)
T TIGR02397 17 IGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKT------SIARIFAKALNC 62 (355)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhcC
Confidence 346677777776665322 335899999999999 677777665543
No 326
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.27 E-value=0.14 Score=58.19 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=42.5
Q ss_pred HHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 430 SAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 430 ~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
..+..+|++ .....++|.|||||||| +.....+...+++ +.++++++.-.+.. .+.++..
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt-----~l~~~f~~~~~~~--ge~~~y~s~eEs~~-~i~~~~~ 311 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKT-----LLVSKFLENACAN--KERAILFAYEESRA-QLLRNAY 311 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEEeeCCHH-HHHHHHH
Confidence 445666764 34568999999999999 6666777666664 78999998766554 4445543
No 327
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.065 Score=63.49 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=24.2
Q ss_pred ccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHH
Q 006311 543 QYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMI 585 (651)
Q Consensus 543 ~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LI 585 (651)
..-|++++|.-...+...-+.+|.||-.|-+.--...+-+.+.
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~ 491 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASIL 491 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHH
Confidence 3346666666665555555677777765555444444444433
No 328
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.23 E-value=0.77 Score=53.94 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=29.0
Q ss_pred CCccEEEEecCCCCChHh--HHHHHhccccCCCeEEEEeC-CCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPE--TMIVLGNLANENTRVIVTGA-PHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE--~LIpL~~la~~~~rvVLaGD-~~QL~PvV~S~ 613 (651)
+.+.+||||||...+... +|.-...-...++.+||+-+ ...+.|.+.|.
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR 171 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR 171 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh
Confidence 357899999998887632 22222211124567788775 45566655543
No 329
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.23 E-value=0.1 Score=54.08 Aligned_cols=66 Identities=11% Similarity=0.034 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHH--HHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 427 DSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI--RRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 427 ~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql--l~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
...+.|...|.. .+...+.|+|++|+||| |+|..+.+- .+..-+..+.+....+.....+.+.+..
T Consensus 3 ~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT------~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~ 72 (287)
T PF00931_consen 3 KEIEKLKDWLLDNSNEVRVVAIVGMGGIGKT------TLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILR 72 (287)
T ss_dssp HHHHHHHHHHHTTTTSSEEEEEEESTTSSHH------HHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEEEEEcCCcCCcc------eeeeecccccccccccccccccccccccccccccccccc
Confidence 456667766754 35678999999999999 666555443 2222234455555544333444444444
No 330
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.058 Score=57.76 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=20.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+.-.+|||||||||| .++++|..-+-
T Consensus 166 Pkg~ll~GppGtGKT------lla~~Vaa~mg 191 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKT------LLARAVAATMG 191 (388)
T ss_pred CceeEEeCCCCCchh------HHHHHHHHhcC
Confidence 445789999999999 88888875443
No 331
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.18 E-value=0.1 Score=57.85 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHhccCCCc-eEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 425 DSDSNSAVHQILSFEGQSP-YLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p-~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
++.-.+.+...+...+.+. +|++||||+||| |++.++...+.+
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKt------t~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKT------TAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHH------HHHHHHHHHhcC
Confidence 3333444445444333333 889999999999 777777666554
No 332
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.15 E-value=0.22 Score=56.99 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-----CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-----SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-----~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
.+.|++|+-..+. ..-.+-.+|.|+|||+ ...+.++.++... ..+-+.+|.+|+..-|.++-....+.
T Consensus 160 t~iq~~aipvfl~---~r~~lAcapTGsgKtl----af~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 160 TPIQKQAIPVFLE---KRDVLACAPTGSGKTL----AFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred Ccccchhhhhhhc---ccceEEeccCCCcchh----hhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 5678888888777 5677899999999992 2233333333322 23468999999998887777766652
Q ss_pred C-CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC---CCCCCccEEEEecC
Q 006311 500 I-PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG---ITAGHFSHIFLIDA 575 (651)
Q Consensus 500 l-~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~---~~~~~F~~IiIDEA 575 (651)
- .+..-+|+... .|...... .+....-..++|+++|..-.-.+...+ +.-.+..|+++|||
T Consensus 233 ~~~~~t~~~a~~~------------~~~~~~~q---k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEa 297 (593)
T KOG0344|consen 233 SIDEGTSLRAAQF------------SKPAYPSQ---KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEA 297 (593)
T ss_pred CCCCCCchhhhhc------------ccccchhh---ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechH
Confidence 1 12222222111 11100000 011112256788888887654444332 23345779999999
Q ss_pred CCCChH
Q 006311 576 SSATEP 581 (651)
Q Consensus 576 sQatEp 581 (651)
..+.||
T Consensus 298 D~lfe~ 303 (593)
T KOG0344|consen 298 DLLFEP 303 (593)
T ss_pred HhhhCh
Confidence 999999
No 333
>PRK06921 hypothetical protein; Provisional
Probab=93.15 E-value=0.098 Score=54.97 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=26.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
...++++|||||||| +.+..+..++.+. .+..|+.++.
T Consensus 117 ~~~l~l~G~~G~GKT-----hLa~aia~~l~~~-~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKT-----HLLTAAANELMRK-KGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHH-----HHHHHHHHHHhhh-cCceEEEEEH
Confidence 467999999999999 5555444555442 2567776663
No 334
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=93.14 E-value=0.31 Score=57.48 Aligned_cols=162 Identities=13% Similarity=0.144 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCc-eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSP-YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p-~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..|-+.|.+-+.-.++.-.++. -++---=|-||| ..||+-+.+-....+-...-||++|- +..++-...+....
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKT----lQtIs~l~yl~~~~~~~GPfLVi~P~-StL~NW~~Ef~rf~ 240 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKT----LQTISLLGYLKGRKGIPGPFLVIAPK-STLDNWMNEFKRFT 240 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchH----HHHHHHHHHHHHhcCCCCCeEEEeeH-hhHHHHHHHHHHhC
Confidence 5678889888887766421222 355568899999 34554444322223335678888883 45667777777666
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCCh
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatE 580 (651)
|...++.+.....+ +. +.. .+.+. + ..+.|++||...+-.-.+. +..-.+.++|||||...-.
T Consensus 241 P~l~~~~~~Gdk~e--------R~-~~~-r~~~~-~-----~~fdV~iTsYEi~i~dk~~-lk~~~W~ylvIDEaHRiKN 303 (971)
T KOG0385|consen 241 PSLNVVVYHGDKEE--------RA-ALR-RDIML-P-----GRFDVCITSYEIAIKDKSF-LKKFNWRYLVIDEAHRIKN 303 (971)
T ss_pred CCcceEEEeCCHHH--------HH-HHH-HHhhc-c-----CCCceEeehHHHHHhhHHH-HhcCCceEEEechhhhhcc
Confidence 66666555432110 00 000 01111 1 2678999999877443221 3344689999999999877
Q ss_pred HhHHHHHh-ccccCCCeEEEEeCCCC
Q 006311 581 PETMIVLG-NLANENTRVIVTGAPHN 605 (651)
Q Consensus 581 pE~LIpL~-~la~~~~rvVLaGD~~Q 605 (651)
..+++--. .......|+.|.|-|-|
T Consensus 304 ~~s~L~~~lr~f~~~nrLLlTGTPLQ 329 (971)
T KOG0385|consen 304 EKSKLSKILREFKTDNRLLLTGTPLQ 329 (971)
T ss_pred hhhHHHHHHHHhcccceeEeeCCccc
Confidence 76655322 12234569999999999
No 335
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=93.04 E-value=0.26 Score=58.20 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 421 NYKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..++..|..++..++.. .+....+|.|.+|+||| .++++++.+ .+..+||+||+...|+.+.+.|..
T Consensus 10 ~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka-----~lia~l~~~-----~~r~vLIVt~~~~~A~~l~~dL~~ 79 (652)
T PRK05298 10 PYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKT-----FTMANVIAR-----LQRPTLVLAHNKTLAAQLYSEFKE 79 (652)
T ss_pred CCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHH-----HHHHHHHHH-----hCCCEEEEECCHHHHHHHHHHHHH
Confidence 357899999999998765 23335679999999999 777654432 256899999999999999999987
Q ss_pred hCCCcch
Q 006311 499 DIPASEM 505 (651)
Q Consensus 499 ~l~~~~i 505 (651)
.+++..+
T Consensus 80 ~~~~~~v 86 (652)
T PRK05298 80 FFPENAV 86 (652)
T ss_pred hcCCCeE
Confidence 6655433
No 336
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.00 E-value=0.11 Score=57.25 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=28.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...+++.||+|+||| +|++.+..++.......+|.+++
T Consensus 137 g~ii~lvGptGvGKT-----TtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKT-----TTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHH-----HHHHHHHHHHHHhcCCCeEEEEe
Confidence 468899999999999 88888877765433335776554
No 337
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.97 E-value=0.1 Score=52.08 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=23.4
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
+.++|.||+|+||| +++..++.. +....+.+|+..-
T Consensus 2 GlilI~GptGSGKT-----Tll~~ll~~-~~~~~~~~i~t~e 37 (198)
T cd01131 2 GLVLVTGPTGSGKS-----TTLAAMIDY-INKNKTHHILTIE 37 (198)
T ss_pred cEEEEECCCCCCHH-----HHHHHHHHH-hhhcCCcEEEEEc
Confidence 47899999999999 665444444 4332345665543
No 338
>PHA00729 NTP-binding motif containing protein
Probab=92.96 E-value=0.062 Score=55.30 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=18.2
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
.-++|.|+|||||| |++.++..-
T Consensus 18 ~nIlItG~pGvGKT------~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKT------TYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHH------HHHHHHHHH
Confidence 35799999999999 777766543
No 339
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.93 E-value=0.049 Score=50.34 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=15.1
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
+++.||||+||| |++..+.
T Consensus 2 ii~~G~pgsGKS------t~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKS------TLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHH------HHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHH
Confidence 689999999999 6655443
No 340
>PHA02624 large T antigen; Provisional
Probab=92.92 E-value=0.12 Score=59.95 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 426 SDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 426 ~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..=..|++.++.+ +...-++++|||||||| |++.++...+.
T Consensus 415 ~~~~~~lk~~l~giPKk~~il~~GPpnTGKT------tf~~sLl~~L~ 456 (647)
T PHA02624 415 DVIYDILKLIVENVPKRRYWLFKGPVNSGKT------TLAAALLDLCG 456 (647)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHH------HHHHHHHHHcC
Confidence 4455667777654 34568999999999999 77777766554
No 341
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.89 E-value=0.066 Score=51.96 Aligned_cols=21 Identities=5% Similarity=-0.077 Sum_probs=17.3
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
++|.|||||||| |++..+.+-
T Consensus 2 i~i~G~pGsGKs------t~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKG------TQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHH------HHHHHHHHH
Confidence 689999999999 777776553
No 342
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=0.088 Score=54.92 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFR 507 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~R 507 (651)
+.=++++|||||||| .++.++.+.- . |+.-......+..++.. .+.+++|
T Consensus 181 PKGvlLygppgtGkt------LlaraVahht----~-----c~firvsgselvqk~ig--egsrmvr 230 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKT------LLARAVAHHT----D-----CTFIRVSGSELVQKYIG--EGSRMVR 230 (404)
T ss_pred CcceEEecCCCCchh------HHHHHHHhhc----c-----eEEEEechHHHHHHHhh--hhHHHHH
Confidence 456899999999999 7777776422 2 34444445566666654 3445555
No 343
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.83 E-value=0.23 Score=50.18 Aligned_cols=56 Identities=5% Similarity=-0.043 Sum_probs=34.9
Q ss_pred HHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 432 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 432 V~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
+..++.+ .....++|.|||||||| +....++.+.++. +.+++..+.--. ++.+.++
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT-----~l~~~~~~~~~~~--g~~~~~is~e~~-~~~i~~~ 66 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKT-----IFCLHFAYKGLRD--GDPVIYVTTEES-RESIIRQ 66 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChH-----HHHHHHHHHHHhc--CCeEEEEEccCC-HHHHHHH
Confidence 4555532 34568999999999999 5555555555543 667666665333 3455555
No 344
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.077 Score=60.25 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=18.6
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
=.|++|||||||| .+|.-|-.++..
T Consensus 258 GiLLyGPPGTGKT------LiARqIGkMLNA 282 (744)
T KOG0741|consen 258 GILLYGPPGTGKT------LIARQIGKMLNA 282 (744)
T ss_pred eEEEECCCCCChh------HHHHHHHHHhcC
Confidence 4689999999999 666655555543
No 345
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.059 Score=63.39 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=17.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
+.=.|++|||||||| .+|.||.
T Consensus 705 RSGILLYGPPGTGKT------LlAKAVA 726 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKT------LLAKAVA 726 (953)
T ss_pred cceeEEECCCCCchH------HHHHHHH
Confidence 345799999999999 6776665
No 346
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.80 E-value=0.14 Score=58.03 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..+++.|.+.+..+++. ..+.+|+.||.|+||| +|+-.++.++..
T Consensus 240 Lg~~~~~~~~~~~~~~~-p~GliLvTGPTGSGKT-----TTLY~~L~~ln~ 284 (500)
T COG2804 240 LGMSPFQLARLLRLLNR-PQGLILVTGPTGSGKT-----TTLYAALSELNT 284 (500)
T ss_pred hCCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCHH-----HHHHHHHHHhcC
Confidence 35589999999998874 3689999999999999 888877766544
No 347
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.78 E-value=0.21 Score=56.80 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcc
Q 006311 427 DSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASE 504 (651)
Q Consensus 427 ~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~ 504 (651)
.|-+||+.+..+ .+.....+.|-.||||| +|++..|.++ +..-||.||-..-|-+|...+...+|+..
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKT-----fT~AnVI~~~-----~rPtLV~AhNKTLAaQLy~Efk~fFP~Na 85 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGSGKT-----FTMANVIAKV-----QRPTLVLAHNKTLAAQLYSEFKEFFPENA 85 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccCCch-----hHHHHHHHHh-----CCCeEEEecchhHHHHHHHHHHHhCcCcc
Confidence 488999988865 35667899999999999 9999988753 44679999999999999999988777764
Q ss_pred h
Q 006311 505 M 505 (651)
Q Consensus 505 i 505 (651)
+
T Consensus 86 V 86 (663)
T COG0556 86 V 86 (663)
T ss_pred e
Confidence 3
No 348
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=92.73 E-value=0.059 Score=59.31 Aligned_cols=26 Identities=12% Similarity=-0.153 Sum_probs=20.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+...+|+|||||||| .++++|..-+.
T Consensus 148 PlgllL~GPPGcGKT------llAraiA~elg 173 (413)
T PLN00020 148 PLILGIWGGKGQGKS------FQCELVFKKMG 173 (413)
T ss_pred CeEEEeeCCCCCCHH------HHHHHHHHHcC
Confidence 456889999999999 77888775443
No 349
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.61 E-value=0.071 Score=60.78 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=20.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+..+|++|||||||| .++.++..-+.
T Consensus 259 pkGILL~GPpGTGKT------llAkaiA~e~~ 284 (489)
T CHL00195 259 PRGLLLVGIQGTGKS------LTAKAIANDWQ 284 (489)
T ss_pred CceEEEECCCCCcHH------HHHHHHHHHhC
Confidence 456999999999999 77777766443
No 350
>PRK09354 recA recombinase A; Provisional
Probab=92.60 E-value=0.23 Score=54.27 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=34.1
Q ss_pred HHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhH
Q 006311 431 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTC 489 (651)
Q Consensus 431 AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAa 489 (651)
++..+|+ + ++...+.|+|||||||| +....++.+..+. +.+++....-++.-
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKT-----tLal~~~~~~~~~--G~~~~yId~E~s~~ 101 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKT-----TLALHAIAEAQKA--GGTAAFIDAEHALD 101 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCcEEEECCccchH
Confidence 4556676 3 34568999999999999 5555566555543 56666555544433
No 351
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.56 E-value=0.13 Score=62.12 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+++.+.+..+|......-.+++|||||||| ++++.+.+.+.
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKT------al~~~la~~i~ 225 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKT------AIAEGLAQRIV 225 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHH------HHHHHHHHHHH
Confidence 5677778888887644445689999999999 77787776654
No 352
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.50 E-value=0.19 Score=57.20 Aligned_cols=60 Identities=5% Similarity=-0.140 Sum_probs=37.5
Q ss_pred HHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 432 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 432 V~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..+|++ .+...++|.|||||||| +...+.+.+-+++ .+.++|.++...+. +.+.+....
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT-----~la~qfl~~g~~~-~ge~~lyvs~eE~~-~~l~~~~~~ 71 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKT-----LFSIQFLYNGIIH-FDEPGVFVTFEESP-QDIIKNARS 71 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHH-----HHHHHHHHHHHHh-CCCCEEEEEEecCH-HHHHHHHHH
Confidence 4455653 34678999999999999 4444444443332 36788888876444 445444443
No 353
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.46 E-value=1.3 Score=52.86 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..++..|.+|++..... .+...++|.+.=|-||| ..+--++.++.+.....+|.|+|||-.|++.+.+-+.+
T Consensus 210 l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKS-----A~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 210 LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKS-----AALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHh-----HHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHH
Confidence 35688888877655432 23458999999999999 44443333333332256999999999999999988876
No 354
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.46 E-value=0.15 Score=58.10 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
..+.++|.+++..++.. ..+.++|.||+|+||| +|+..++.++
T Consensus 224 Lg~~~~~~~~l~~~~~~-~~GlilitGptGSGKT-----TtL~a~L~~l 266 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR-PHGIILVTGPTGSGKT-----TTLYAALSRL 266 (486)
T ss_pred cCCCHHHHHHHHHHHhc-CCCEEEEEcCCCCCHH-----HHHHHHHhcc
Confidence 45789999999988763 3578999999999999 8876665544
No 355
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.45 E-value=0.073 Score=49.80 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=19.8
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
...|++|+|+|||||+ ++|.++.+.
T Consensus 20 ~~~pvli~GE~GtGK~------~~A~~lh~~ 44 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKS------LLARALHRY 44 (138)
T ss_dssp SSS-EEEECCTTSSHH------HHHHCCHHT
T ss_pred CCCcEEEEcCCCCCHH------HHHHHHHhh
Confidence 4689999999999999 677777653
No 356
>PRK10436 hypothetical protein; Provisional
Probab=92.44 E-value=0.17 Score=57.31 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
..+.+.|.+.+..++.. ..+.++|.||.|+||| +|+..++.++
T Consensus 200 LG~~~~~~~~l~~~~~~-~~GliLvtGpTGSGKT-----TtL~a~l~~~ 242 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQ-PQGLILVTGPTGSGKT-----VTLYSALQTL 242 (462)
T ss_pred cCcCHHHHHHHHHHHHh-cCCeEEEECCCCCChH-----HHHHHHHHhh
Confidence 45788999999987753 3679999999999999 8887766654
No 357
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.41 E-value=0.2 Score=51.79 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=37.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
...++|.||||+||| +.+.+.+.++... .+.+|++.+-... .+.++.|+..
T Consensus 30 g~~~~i~g~~G~GKT-----~l~~~~~~~~~~~-~g~~vl~iS~E~~-~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKT-----TFLREYALDLITQ-HGVRVGTISLEEP-VVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHH-----HHHHHHHHHHHHh-cCceEEEEEcccC-HHHHHHHHHH
Confidence 458999999999999 6666666665543 3789999887664 4566777654
No 358
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.39 E-value=0.35 Score=54.81 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=25.2
Q ss_pred cccceEeeehh-cchhhhh-cCCCCCCccEEEEecCCCCChH
Q 006311 542 RQYKVISSTFV-SSFRLHN-QGITAGHFSHIFLIDASSATEP 581 (651)
Q Consensus 542 ~~~rIVvtT~s-sa~~l~~-~~~~~~~F~~IiIDEAsQatEp 581 (651)
..-+|||+|.. ..-++++ ..|.-....++|+|||-.++|-
T Consensus 301 s~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLee 342 (691)
T KOG0338|consen 301 SRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEE 342 (691)
T ss_pred hCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHH
Confidence 34589999976 2233332 2333444568999999887663
No 359
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.38 E-value=0.26 Score=53.82 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=34.9
Q ss_pred CCCccEEEEecCCCCChHhHHHHHhcccc--CCCeEEEEeC-CCCCCccccCh
Q 006311 564 AGHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGA-PHNSPSRVRSD 613 (651)
Q Consensus 564 ~~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~rvVLaGD-~~QL~PvV~S~ 613 (651)
.+.+.++|||+|-.+++..+=--|..+-. +++.+||+.+ +.+|.|+|+|.
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR 182 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR 182 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc
Confidence 35689999999988887654333333332 4567777765 48999998874
No 360
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=0.92 Score=51.25 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=31.5
Q ss_pred CCceE--EeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYL--LEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~L--I~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
.+||+ +.|-.|-||+ +.|+.+..+++++ +.||||.|-
T Consensus 376 krPYVi~fvGVNGVGKS-----TNLAKIayWLlqN--kfrVLIAAC 414 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKS-----TNLAKIAYWLLQN--KFRVLIAAC 414 (587)
T ss_pred CCCeEEEEEeecCcccc-----chHHHHHHHHHhC--CceEEEEec
Confidence 45664 6899999999 9999999999987 889999764
No 361
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.36 E-value=0.077 Score=47.63 Aligned_cols=22 Identities=5% Similarity=-0.043 Sum_probs=17.1
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+|.|+|||||| |++..+.+.+
T Consensus 1 I~i~G~~GsGKt------Tia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKT------TIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHH------HHHHHHHHHH
T ss_pred CEEECCCCCCHH------HHHHHHHHHH
Confidence 479999999999 7776665544
No 362
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.067 Score=61.58 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=17.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
+.=+|+||||||||| .++.||.
T Consensus 223 prGvLlHGPPGCGKT------~lA~AiA 244 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKT------SLANAIA 244 (802)
T ss_pred CCceeeeCCCCccHH------HHHHHHh
Confidence 345899999999999 5665554
No 363
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.23 E-value=0.29 Score=49.08 Aligned_cols=51 Identities=6% Similarity=0.033 Sum_probs=30.5
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC----CCCeEEEEccCh
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----PKSRILICAPWN 486 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~----~~~rILVcApSN 486 (651)
.+..+|++ .....+.|.||||+||| .....++....... .+.+++..+..+
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT-----~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKT-----QLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChh-----HHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 34556643 34568999999999999 55555544443321 015665555443
No 364
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.22 E-value=0.21 Score=58.46 Aligned_cols=52 Identities=12% Similarity=0.005 Sum_probs=33.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
....++.|||||||| |++.++.+.+....-..++++..++-..+.+...+..
T Consensus 37 ~~~~ll~G~pG~GKT------~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~ 88 (608)
T TIGR00764 37 KRNVLLIGEPGVGKS------MLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPA 88 (608)
T ss_pred CCCEEEECCCCCCHH------HHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHH
Confidence 458899999999999 8888887766532114556555554444444444444
No 365
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.18 E-value=0.25 Score=53.38 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=34.5
Q ss_pred CCCccEEEEecCCCCChHhHHHHHhcccc--CCCeEEEEeC-CCCCCccccCh
Q 006311 564 AGHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGA-PHNSPSRVRSD 613 (651)
Q Consensus 564 ~~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~rvVLaGD-~~QL~PvV~S~ 613 (651)
.+.+.++|||+|-.+++..+=.-|..+-. +++.+||+.+ +.+|.|+|+|.
T Consensus 106 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 35688999999988886544333332322 4567787755 68999998875
No 366
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.17 E-value=0.16 Score=53.68 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=14.7
Q ss_pred CCCceEEeCcCCCCCC
Q 006311 440 GQSPYLLEGPLCNNFV 455 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT 455 (651)
...|+++.||+|||||
T Consensus 32 ~~~pvLl~G~~GtGKT 47 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKT 47 (272)
T ss_dssp CTEEEEEESSTTSSHH
T ss_pred cCCcEEEECCCCCchh
Confidence 4679999999999999
No 367
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.15 E-value=0.1 Score=50.46 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=19.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
.+.++|.||||+||| |+++.+.+.
T Consensus 3 ~~ii~i~G~~GsGKs------Tl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKG------TQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHH------HHHHHHHHH
Confidence 357889999999999 777766653
No 368
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=92.15 E-value=0.13 Score=53.20 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=25.4
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE--ccCh
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC--APWN 486 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc--ApSN 486 (651)
.+|.||||+||| |-+.-..|++.. .+.++.++ -|-|
T Consensus 5 qvVIGPPgSGKs------TYc~g~~~fls~-~gr~~~vVNLDPaN 42 (290)
T KOG1533|consen 5 QVVIGPPGSGKS------TYCNGMSQFLSA-IGRPVAVVNLDPAN 42 (290)
T ss_pred eEEEcCCCCCcc------chhhhHHHHHHH-hCCceEEEecCCcc
Confidence 379999999999 777777787775 34444443 4444
No 369
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.14 E-value=0.58 Score=52.87 Aligned_cols=145 Identities=13% Similarity=0.157 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc-cChhhHHHHHHHHHhhCCCcch
Q 006311 427 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA-PWNRTCDKLMECLMKDIPASEM 505 (651)
Q Consensus 427 ~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA-pSNsAaD~l~~rL~~~l~~~~i 505 (651)
+|+.-+..++. .+..+++.|-.|+||| +-|-..+...... ..+-.+|| |-..||=.++.|..+.+.-.-=
T Consensus 50 ~~k~~F~~~l~--~nQ~~v~vGetgsGKt-----tQiPq~~~~~~~~--~~~~v~CTQprrvaamsva~RVadEMDv~lG 120 (699)
T KOG0925|consen 50 EQKEEFLKLLL--NNQIIVLVGETGSGKT-----TQIPQFVLEYELS--HLTGVACTQPRRVAAMSVAQRVADEMDVTLG 120 (699)
T ss_pred HhHHHHHHHHh--cCceEEEEecCCCCcc-----ccCcHHHHHHHHh--hccceeecCchHHHHHHHHHHHHHHhccccc
Confidence 57777887776 3678899999999999 6666655554443 22444555 5677888999999873321100
Q ss_pred hhhcccccccc-CCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChH-hH
Q 006311 506 FRANAAFREAD-GVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP-ET 583 (651)
Q Consensus 506 ~Rv~a~~R~~~-~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEp-E~ 583 (651)
--+++.-|..+ .-+..+++||-.. .. |+++ + .+---+.+.+||+|||..-+-+ +.
T Consensus 121 ~EVGysIrfEdC~~~~T~Lky~tDg-mL--------lrEa--------m------s~p~l~~y~viiLDeahERtlATDi 177 (699)
T KOG0925|consen 121 EEVGYSIRFEDCTSPNTLLKYCTDG-ML--------LREA--------M------SDPLLGRYGVIILDEAHERTLATDI 177 (699)
T ss_pred hhccccccccccCChhHHHHHhcch-HH--------HHHH--------h------hCcccccccEEEechhhhhhHHHHH
Confidence 11222222211 3455677787532 10 1110 0 0011246889999999654432 44
Q ss_pred HHHHhc---cccCCCeEEEEeCC
Q 006311 584 MIVLGN---LANENTRVIVTGAP 603 (651)
Q Consensus 584 LIpL~~---la~~~~rvVLaGD~ 603 (651)
|+-|.. ..+++-++|...++
T Consensus 178 LmGllk~v~~~rpdLk~vvmSat 200 (699)
T KOG0925|consen 178 LMGLLKEVVRNRPDLKLVVMSAT 200 (699)
T ss_pred HHHHHHHHHhhCCCceEEEeecc
Confidence 444431 12244566666554
No 370
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=92.02 E-value=0.21 Score=56.35 Aligned_cols=121 Identities=10% Similarity=0.094 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh--h
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK--D 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~--~ 499 (651)
..+-+.|...+..+.+..+.+--+|.=|-|.||| .+-+.|+. .-+++.||.+-|+..+++-...+.. -
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKt-----LVGvTAa~-----tikK~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKT-----LVGVTAAC-----TIKKSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCc-----eeeeeeee-----eecccEEEEecCccCHHHHHHHHHhhcc
Confidence 3567889999999997544445577779999999 55555443 2356889999999999988877664 3
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc---------CCCCCCccEE
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ---------GITAGHFSHI 570 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~---------~~~~~~F~~I 570 (651)
+.+..+.|+.+... +.|. ..+-|+|+|.++.+.-... -+....+-.+
T Consensus 371 i~d~~i~rFTsd~K-----------------e~~~-------~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGll 426 (776)
T KOG1123|consen 371 IQDDQICRFTSDAK-----------------ERFP-------SGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLL 426 (776)
T ss_pred cCccceEEeecccc-----------------ccCC-------CCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeE
Confidence 44444444433211 1121 5678999999976532111 1233457899
Q ss_pred EEecCC
Q 006311 571 FLIDAS 576 (651)
Q Consensus 571 iIDEAs 576 (651)
++||..
T Consensus 427 llDEVH 432 (776)
T KOG1123|consen 427 LLDEVH 432 (776)
T ss_pred Eeehhc
Confidence 999984
No 371
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.00 E-value=0.099 Score=54.08 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=21.3
Q ss_pred EeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE
Q 006311 446 LEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 481 (651)
Q Consensus 446 I~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV 481 (651)
|.||||+||| |++..+.+++... +.++.+
T Consensus 1 ViGpaGSGKT------T~~~~~~~~~~~~-~~~~~~ 29 (238)
T PF03029_consen 1 VIGPAGSGKT------TFCKGLSEWLESN-GRDVYI 29 (238)
T ss_dssp -EESTTSSHH------HHHHHHHHHHTTT--S-EEE
T ss_pred CCCCCCCCHH------HHHHHHHHHHHhc-cCCceE
Confidence 6899999999 9999999988763 444444
No 372
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.97 E-value=0.15 Score=53.73 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=26.9
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE-ccC
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APW 485 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc-ApS 485 (651)
..+++.||||+||| +|++.+...+.+. +.+|++. +.+
T Consensus 73 ~vi~l~G~~G~GKT-----Tt~akLA~~l~~~--g~~V~li~~D~ 110 (272)
T TIGR00064 73 NVILFVGVNGVGKT-----TTIAKLANKLKKQ--GKSVLLAAGDT 110 (272)
T ss_pred eEEEEECCCCCcHH-----HHHHHHHHHHHhc--CCEEEEEeCCC
Confidence 45677899999999 8888888766443 6677654 444
No 373
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.81 E-value=0.12 Score=46.40 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=10.9
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
+.|+||||+|||
T Consensus 1 I~i~G~~G~GKS 12 (107)
T PF00910_consen 1 IWIYGPPGIGKS 12 (107)
T ss_pred CEEECCCCCCHH
Confidence 369999999999
No 374
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.78 E-value=0.23 Score=53.26 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=29.3
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 481 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV 481 (651)
..+.+||.||.|+||| +|++.+|-.+-++ ...+||-
T Consensus 124 ~~GLILVTGpTGSGKS-----TTlAamId~iN~~-~~~HIlT 159 (353)
T COG2805 124 PRGLILVTGPTGSGKS-----TTLAAMIDYINKH-KAKHILT 159 (353)
T ss_pred CCceEEEeCCCCCcHH-----HHHHHHHHHHhcc-CCcceEE
Confidence 4689999999999999 9999999876664 4556654
No 375
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.77 E-value=0.12 Score=49.18 Aligned_cols=25 Identities=8% Similarity=-0.009 Sum_probs=20.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.|||||||| |++.++.+.+
T Consensus 4 ~~~i~l~G~~GsGKs------tla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKS------TIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHH------HHHHHHHHHh
Confidence 346889999999999 8888776654
No 376
>PRK08118 topology modulation protein; Reviewed
Probab=91.75 E-value=0.11 Score=50.60 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=19.1
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
++|.||||+||| |++..+...+.
T Consensus 4 I~I~G~~GsGKS------Tlak~L~~~l~ 26 (167)
T PRK08118 4 IILIGSGGSGKS------TLARQLGEKLN 26 (167)
T ss_pred EEEECCCCCCHH------HHHHHHHHHhC
Confidence 689999999999 88887776544
No 377
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=91.75 E-value=0.31 Score=59.48 Aligned_cols=42 Identities=7% Similarity=0.010 Sum_probs=37.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTC 489 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAa 489 (651)
-+.|.-+.||||| .|.+.+|+++.+.....+++|+.||++--
T Consensus 61 n~~~~M~TGtGKT-----~~~~~~i~~l~~~~~~~~fii~vp~~aI~ 102 (986)
T PRK15483 61 NIDIKMETGTGKT-----YVYTRLMYELHQKYGLFKFIIVVPTPAIK 102 (986)
T ss_pred eEEEEeCCCCCHH-----HHHHHHHHHHHHHcCCcEEEEEeCCHHHH
Confidence 4678889999999 99999999999988889999999998643
No 378
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.71 E-value=0.3 Score=55.80 Aligned_cols=59 Identities=17% Similarity=0.070 Sum_probs=41.5
Q ss_pred HHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 432 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 432 V~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..++++ .....++|.|||||||| ......+...++. +.++++.+.... .+.+.++...
T Consensus 262 lD~~l~GG~~~g~~~li~G~~G~GKT-----~l~~~~~~~~~~~--g~~~~yis~e~~-~~~i~~~~~~ 322 (509)
T PRK09302 262 LDEMLGGGFFRGSIILVSGATGTGKT-----LLASKFAEAACRR--GERCLLFAFEES-RAQLIRNARS 322 (509)
T ss_pred HHHhhcCCCCCCcEEEEEcCCCCCHH-----HHHHHHHHHHHhC--CCcEEEEEecCC-HHHHHHHHHH
Confidence 4455643 34568899999999999 6666666666654 789999988776 5556665543
No 379
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.70 E-value=0.57 Score=50.94 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=34.4
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc--CCCeEEEEeC-CCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGA-PHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~rvVLaGD-~~QL~PvV~S~ 613 (651)
|...++|||+|-.+++..+=--|..+-. .++-+||+-+ +.+|.|+|+|.
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 5688999999988887554333332332 4577777776 58899998864
No 380
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.62 E-value=0.32 Score=56.90 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHHHHhccCCC--ceEEeCcCCCCCCCCchhHHHHHHHHHHHH-h------CC-CCeEEEEccCh---hhH
Q 006311 423 KLDSDSNSAVHQILSFEGQS--PYLLEGPLCNNFVLSKTGNVVREAVLQIRR-R------SP-KSRILICAPWN---RTC 489 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~--p~LI~GPPGTGKT~s~~~~TlveaI~qll~-~------~~-~~rILVcApSN---sAa 489 (651)
.|=+.|+.|+.-.+-.++.+ =-++-.-=|-||| .+++++|+.--. + .+ ...-||++|-. .=.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKT-----lsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~ 399 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKT-----LSMISLILHQKAARKAREKKGESASKTLIICPASLIHQWE 399 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccc-----hHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHH
Confidence 56778999998877554332 2467778899999 887777754211 1 01 12478888821 222
Q ss_pred HHHHHHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh----cC----
Q 006311 490 DKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN----QG---- 561 (651)
Q Consensus 490 D~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~----~~---- 561 (651)
+.+..|+.. +.+|+ +.+.+..++....+.|+.|+||+||+........ .+
T Consensus 400 ~Ev~~rl~~-----n~LsV-----------------~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~s 457 (901)
T KOG4439|consen 400 AEVARRLEQ-----NALSV-----------------YLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSS 457 (901)
T ss_pred HHHHHHHhh-----cceEE-----------------EEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCcc
Confidence 333333322 22222 2222333344556788999999999986554110 00
Q ss_pred -CCCCCccEEEEecCCCCChHhHH--HHHhccccCCCeEEEEeCCCCCC
Q 006311 562 -ITAGHFSHIFLIDASSATEPETM--IVLGNLANENTRVIVTGAPHNSP 607 (651)
Q Consensus 562 -~~~~~F~~IiIDEAsQatEpE~L--IpL~~la~~~~rvVLaGD~~QL~ 607 (651)
+..-.++-||+|||.-...+-+- .++..++ ...|+.|.|-|-|-.
T Consensus 458 pL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~-a~~RWclTGTPiqNn 505 (901)
T KOG4439|consen 458 PLARIAWSRVILDEAHNIRNSNTQCSKAVCKLS-AKSRWCLTGTPIQNN 505 (901)
T ss_pred HHHHhhHHHhhhhhhhhhcccchhHHHHHHHHh-hcceeecccCccccc
Confidence 11124788999999765544332 3333222 345999999988753
No 381
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.58 E-value=0.19 Score=59.20 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=37.6
Q ss_pred HHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 428 SNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 428 Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
|..|+..+... .....+++.|||||||| |++.++.+.+....-..+++...+...-..+++.+.
T Consensus 36 q~~a~~~L~~~~~~~~~~l~~G~~G~GKt------tla~~l~~~l~~~~~~~~~~~~np~~~~~~~~~~v~ 100 (637)
T PRK13765 36 QEHAVEVIKKAAKQRRHVMMIGSPGTGKS------MLAKAMAELLPKEELQDILVYPNPEDPNNPKIRTVP 100 (637)
T ss_pred hHHHHHHHHHHHHhCCeEEEECCCCCcHH------HHHHHHHHHcChHhHHHheEeeCCCcchHHHHHHHH
Confidence 55555544332 23458999999999999 777777766543211445554444444444444444
No 382
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.54 E-value=0.55 Score=49.22 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=37.0
Q ss_pred HHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 429 NSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 429 ~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
++|+.++-.. .+.+...+.|+-||||| +++.|+.+.+......-|.+-+|+ .+...+++++...+
T Consensus 37 ~e~l~~l~~~i~d~qg~~~vtGevGsGKT------v~~Ral~~s~~~d~~~~v~i~~~~-~s~~~~~~ai~~~l 103 (269)
T COG3267 37 NEALLMLHAAIADGQGILAVTGEVGSGKT------VLRRALLASLNEDQVAVVVIDKPT-LSDATLLEAIVADL 103 (269)
T ss_pred hHHHHHHHHHHhcCCceEEEEecCCCchh------HHHHHHHHhcCCCceEEEEecCcc-hhHHHHHHHHHHHh
Confidence 4455544432 35779999999999999 555566665543211122333333 34445666666533
No 383
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.46 E-value=0.22 Score=52.72 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=26.6
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..++|.||.|+||| +|++.++..+.....+.+|.+++
T Consensus 195 ~vi~~vGptGvGKT-----Tt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 195 GVIALVGPTGVGKT-----TTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHHHcCCCeEEEEE
Confidence 36789999999999 88887776665432235666554
No 384
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=91.41 E-value=0.2 Score=58.83 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=22.7
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...+++|.|||||||| |++.++....+
T Consensus 174 ~~~~vlL~Gp~GtGKT------TLAr~i~~~~~ 200 (615)
T TIGR02903 174 FPQHIILYGPPGVGKT------TAARLALEEAK 200 (615)
T ss_pred CCCeEEEECCCCCCHH------HHHHHHHHhhh
Confidence 3567999999999999 88888877664
No 385
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=91.41 E-value=0.35 Score=56.56 Aligned_cols=166 Identities=10% Similarity=0.104 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCc-eEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSP-YLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p-~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..|-+.|..-+.-..+.-..+. -++----|-||| +--+..+.++.+. +--...||+||. +..++-+..+...
T Consensus 566 ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKT-----VQsisvlAhLaE~~nIwGPFLVVtpa-StL~NWaqEisrF 639 (1185)
T KOG0388|consen 566 CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKT-----VQSISVLAHLAETHNIWGPFLVVTPA-STLHNWAQEISRF 639 (1185)
T ss_pred hhhHHHhhccHHHHHHHHHccccceehhhhccchh-----HHHHHHHHHHHHhccCCCceEEeehH-HHHhHHHHHHHHh
Confidence 4678888888887776522222 256667899999 6666666665554 233578999996 4567777777777
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
+|..++++......+ ...++++-+.... |+ .-....|+||+...+-.-... +..-.+.+.|+||| ||.
T Consensus 640 lP~~k~lpywGs~~e----RkiLrKfw~rKnm-Y~-----rna~fhVviTSYQlvVtDeky-~qkvKWQYMILDEA-QAI 707 (1185)
T KOG0388|consen 640 LPSFKVLPYWGSPSE----RKILRKFWNRKNM-YR-----RNAPFHVVITSYQLVVTDEKY-LQKVKWQYMILDEA-QAI 707 (1185)
T ss_pred CccceeecCcCChhh----hHHHHHhcchhhh-hc-----cCCCceEEEEeeeeeechHHH-HHhhhhhheehhHH-HHh
Confidence 888888876543211 1123332211111 22 124567888887654211100 23336889999999 554
Q ss_pred hHhHHHHHhcc--ccCCCeEEEEeCCCC
Q 006311 580 EPETMIVLGNL--ANENTRVIVTGAPHN 605 (651)
Q Consensus 580 EpE~LIpL~~l--a~~~~rvVLaGD~~Q 605 (651)
-...-.-...+ ..-..|++|.|-|-|
T Consensus 708 KSSsS~RWKtLLsF~cRNRLLLTGTPIQ 735 (1185)
T KOG0388|consen 708 KSSSSSRWKTLLSFKCRNRLLLTGTPIQ 735 (1185)
T ss_pred hhhhhhHHHHHhhhhccceeeecCCccc
Confidence 43322111111 012359999999988
No 386
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.12 Score=54.29 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=13.0
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
+.=+|.+||||||||
T Consensus 205 PKGvLmYGPPGTGKT 219 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKT 219 (424)
T ss_pred CCceEeeCCCCCcHH
Confidence 345799999999999
No 387
>PRK14531 adenylate kinase; Provisional
Probab=91.36 E-value=0.13 Score=50.46 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=18.2
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
-++|.||||+||| |++..+.+.+
T Consensus 4 ~i~i~G~pGsGKs------T~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKG------TQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4789999999999 7777665543
No 388
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.35 E-value=0.37 Score=50.27 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=33.6
Q ss_pred HHHHHHHHHHH-hc---cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC
Q 006311 426 SDSNSAVHQIL-SF---EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 485 (651)
Q Consensus 426 ~~Q~~AV~~iL-~~---~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS 485 (651)
+.|++++..-. .. .....+|++|+.||||| .++.+++..+.. .+-|++=+...
T Consensus 33 e~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKS------SlVkall~~y~~-~GLRlIev~k~ 89 (249)
T PF05673_consen 33 ERQKEALIENTEQFLQGLPANNVLLWGARGTGKS------SLVKALLNEYAD-QGLRLIEVSKE 89 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHH------HHHHHHHHHHhh-cCceEEEECHH
Confidence 55666665433 21 23457899999999999 556666655553 46676555443
No 389
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.34 E-value=0.22 Score=59.60 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=24.4
Q ss_pred HHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 431 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 431 AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
-+..+|......-.+++|||||||| ++++++.+.+
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT------~l~~~la~~~ 227 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKT------AIAEGLALRI 227 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHH------HHHHHHHHHH
Confidence 3456665444445689999999999 6677666544
No 390
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=91.33 E-value=1.2 Score=52.82 Aligned_cols=170 Identities=12% Similarity=0.070 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCc-eEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSP-YLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p-~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..|=+.|++-|+-......+.- -+|=--=|=||| .-++..+..++.. .-..+.||++|+-.-. +-+..+..-
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKT-----IQiisFLaaL~~S~k~~~paLIVCP~Tii~-qW~~E~~~w 277 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKT-----IQIISFLAALHHSGKLTKPALIVCPATIIH-QWMKEFQTW 277 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccc-----hhHHHHHHHHhhcccccCceEEEccHHHHH-HHHHHHHHh
Confidence 5788999999998876421111 234447899999 8887777776664 3346889999965322 233334333
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCC--ChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSC--PPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 577 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~--p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ 577 (651)
.+...++=++...+... |.......+.. -...+.....|+++|...... ....+..-.++++|+||+..
T Consensus 278 ~p~~rv~ilh~t~s~~r--------~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~-~~d~l~~~~W~y~ILDEGH~ 348 (923)
T KOG0387|consen 278 WPPFRVFILHGTGSGAR--------YDASHSSHKKDKLLIRKVATDGGILITTYDGFRI-QGDDLLGILWDYVILDEGHR 348 (923)
T ss_pred CcceEEEEEecCCcccc--------cccchhhhhhhhhheeeecccCcEEEEehhhhcc-cCcccccccccEEEecCccc
Confidence 33333222222211100 00000000000 001223456688888876532 22223444689999999999
Q ss_pred CChHhHHHHHhccc-cCCCeEEEEeCCCCC
Q 006311 578 ATEPETMIVLGNLA-NENTRVIVTGAPHNS 606 (651)
Q Consensus 578 atEpE~LIpL~~la-~~~~rvVLaGD~~QL 606 (651)
...|.+-+.++..- ....|+||.|-|.|-
T Consensus 349 IrNpns~islackki~T~~RiILSGTPiQN 378 (923)
T KOG0387|consen 349 IRNPNSKISLACKKIRTVHRIILSGTPIQN 378 (923)
T ss_pred ccCCccHHHHHHHhccccceEEeeCccccc
Confidence 99999988887432 245799999999994
No 391
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.31 E-value=0.12 Score=50.25 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=16.5
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
++|.||||+||| |++..+.+
T Consensus 2 I~i~G~pGsGKs------t~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKG------TQAERLAK 21 (194)
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 589999999999 77766654
No 392
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=91.31 E-value=0.23 Score=57.51 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=25.5
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS 474 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~ 474 (651)
+...+++.||||+||| +|++.+...++..
T Consensus 102 ~~~IL~LvGPpG~GKS------sLa~~la~~le~~ 130 (644)
T PRK15455 102 KKQILYLLGPVGGGKS------SLAERLKSLMERV 130 (644)
T ss_pred CCceEEEecCCCCCch------HHHHHHHHHHHhC
Confidence 4578999999999999 9999999888765
No 393
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.29 E-value=1.5 Score=46.40 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=22.8
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..+++.||+|+||| +++..+...+.. .+.++.+++
T Consensus 76 ~~i~~~G~~g~GKT-----tl~~~l~~~l~~--~~~~v~~i~ 110 (270)
T PRK06731 76 QTIALIGPTGVGKT-----TTLAKMAWQFHG--KKKTVGFIT 110 (270)
T ss_pred CEEEEECCCCCcHH-----HHHHHHHHHHHH--cCCeEEEEe
Confidence 57899999999999 555444444333 255665444
No 394
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.23 Score=60.77 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=26.2
Q ss_pred ccEEEEecCC-------------CCChHhHHHHHhccccCCCeEEEEeCC
Q 006311 567 FSHIFLIDAS-------------SATEPETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 567 F~~IiIDEAs-------------QatEpE~LIpL~~la~~~~rvVLaGD~ 603 (651)
.+.||.||.. +++--.+|++|.-.....++||++|-.
T Consensus 364 PSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 364 PSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred ceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEccc
Confidence 4566666654 344556788887777778999999976
No 395
>CHL00176 ftsH cell division protein; Validated
Probab=91.27 E-value=0.21 Score=58.77 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 423 KLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.-.+++++.+..++.. ..+..+|++|||||||| +++.++..
T Consensus 186 ~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT------~LAralA~ 238 (638)
T CHL00176 186 AGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKT------LLAKAIAG 238 (638)
T ss_pred cChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHH------HHHHHHHH
Confidence 3346666666666532 11346899999999999 67777654
No 396
>PHA02774 E1; Provisional
Probab=91.23 E-value=0.46 Score=55.11 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=25.8
Q ss_pred HHHHHHHHhcc-CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 429 NSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 429 ~~AV~~iL~~~-~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..+++..+... ...-++|+|||||||| .++.++...+.
T Consensus 421 l~~lk~~l~~~PKknciv~~GPP~TGKS------~fa~sL~~~L~ 459 (613)
T PHA02774 421 LTALKDFLKGIPKKNCLVIYGPPDTGKS------MFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHH------HHHHHHHHHhC
Confidence 34555555432 2346899999999999 66666666653
No 397
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=91.17 E-value=0.32 Score=55.60 Aligned_cols=134 Identities=14% Similarity=0.067 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHH-HHHHHHHHHHh----CCCCeEEEEccChhhHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNV-VREAVLQIRRR----SPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~T-lveaI~qll~~----~~~~rILVcApSNsAaD~l~~rL 496 (651)
..+.+-|+++|-.+|.+. -+|=-.-.||||| .. ++-.+-.+++. ..+--.||.+||..-|-++.+-|
T Consensus 90 v~~teiQ~~~Ip~aL~G~---DvlGAAkTGSGKT-----LAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGH---DVLGAAKTGSGKT-----LAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred ccHHHHHHhhcchhccCc---ccccccccCCCce-----eeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHH
Confidence 467999999999999743 2233346799999 43 33333334443 24567999999998888877766
Q ss_pred HhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcc-hhhh-hcCCCCCCccEEEEec
Q 006311 497 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSS-FRLH-NQGITAGHFSHIFLID 574 (651)
Q Consensus 497 ~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa-~~l~-~~~~~~~~F~~IiIDE 574 (651)
.+ ++...- ... ..+-++.-..-.++.+.+.+|+|||..-. .++- +-.+......++|+||
T Consensus 162 ~k---------vgk~h~----fSa-----GLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 162 NK---------VGKHHD----FSA-----GLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred HH---------Hhhccc----ccc-----ceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 54 111100 000 00001000111245678889999997632 1111 1223444567899999
Q ss_pred CCCCChH
Q 006311 575 ASSATEP 581 (651)
Q Consensus 575 AsQatEp 581 (651)
|-.+.+-
T Consensus 224 ADR~LDM 230 (758)
T KOG0343|consen 224 ADRMLDM 230 (758)
T ss_pred HHHHHHH
Confidence 9887654
No 398
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.17 E-value=0.25 Score=57.33 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
..+.++|.+.+..++.. ..+.++|.||.|+||| +|+..++.++
T Consensus 298 lg~~~~~~~~l~~~~~~-~~Glilv~G~tGSGKT-----Ttl~a~l~~~ 340 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHK-PQGMVLVTGPTGSGKT-----VSLYTALNIL 340 (564)
T ss_pred cCCCHHHHHHHHHHHHh-cCCeEEEECCCCCCHH-----HHHHHHHHhh
Confidence 45788999999987753 3679999999999999 8887766554
No 399
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.12 Score=58.90 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=17.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
+.=+|+.|||||||| .|+.||.
T Consensus 337 PKGVLLvGPPGTGKT------lLARAvA 358 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKT------LLARAVA 358 (752)
T ss_pred CCceEEeCCCCCchh------HHHHHhh
Confidence 445899999999999 6665553
No 400
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.14 E-value=0.25 Score=59.09 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
+..++|+|||||||| +++.++..
T Consensus 212 ~~giLL~GppGtGKT------~laraia~ 234 (733)
T TIGR01243 212 PKGVLLYGPPGTGKT------LLAKAVAN 234 (733)
T ss_pred CceEEEECCCCCChH------HHHHHHHH
Confidence 346899999999999 66666554
No 401
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.11 Score=58.89 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=17.8
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
-.|++|||||||| .++.++..
T Consensus 278 giLl~GpPGtGKT------~lAkava~ 298 (494)
T COG0464 278 GVLLYGPPGTGKT------LLAKAVAL 298 (494)
T ss_pred eeEEECCCCCCHH------HHHHHHHh
Confidence 4899999999999 77777765
No 402
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.13 E-value=0.26 Score=40.88 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=18.1
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..|.|+||+||| |++.++.+.+
T Consensus 2 i~i~G~~gsGKs------t~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKS------TVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 578999999999 7777777665
No 403
>PRK14532 adenylate kinase; Provisional
Probab=91.11 E-value=0.13 Score=50.25 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.8
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
++|.||||+||| |++..+.+
T Consensus 3 i~~~G~pGsGKs------T~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKG------TQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 689999999999 77776654
No 404
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=91.11 E-value=0.11 Score=50.30 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=23.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
++..+|.||-||||| |+++||..++-.
T Consensus 19 ~g~~vi~G~Ng~GKS------til~ai~~~L~~ 45 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKS------TILEAIRYALGG 45 (202)
T ss_dssp SEEEEEEESTTSSHH------HHHHHHHHHHHS
T ss_pred CCcEEEECCCCCCHH------HHHHHHHHHHcC
Confidence 578999999999999 888999877754
No 405
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.10 E-value=0.2 Score=57.50 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=20.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...+|++|||||||| |++.++...+.
T Consensus 43 ~~a~Lf~Gp~G~GKT------T~ArilAk~Ln 68 (507)
T PRK06645 43 AGGYLLTGIRGVGKT------TSARIIAKAVN 68 (507)
T ss_pred CceEEEECCCCCCHH------HHHHHHHHHhc
Confidence 357999999999999 77777665554
No 406
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.14 Score=53.95 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=12.9
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
+.=++++||||||||
T Consensus 211 pkgvllygppgtgkt 225 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKT 225 (435)
T ss_pred CCceEEeCCCCCchh
Confidence 334899999999999
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.04 E-value=0.22 Score=53.83 Aligned_cols=38 Identities=8% Similarity=0.021 Sum_probs=26.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE-ccCh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWN 486 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc-ApSN 486 (651)
..+++.||+|+||| +|++.+...+.. .+.+|++. +.+.
T Consensus 115 ~vi~lvGpnGsGKT-----Tt~~kLA~~l~~--~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVGVNGVGKT-----TTIGKLAHKYKA--QGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEECCCCCcHH-----HHHHHHHHHHHh--cCCeEEEEecCcc
Confidence 46778999999999 777776655443 36677765 4443
No 408
>PRK03839 putative kinase; Provisional
Probab=91.00 E-value=0.14 Score=49.78 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=18.2
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++|.|+||+||| |++..+.+.+
T Consensus 3 I~l~G~pGsGKs------T~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKT------TVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 689999999999 7777776644
No 409
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.24 Score=58.22 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=24.2
Q ss_pred HHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 429 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 429 ~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.-||......-.-+..++.||||+||| .|+..|...+.
T Consensus 338 yLAV~~l~~~~kGpILcLVGPPGVGKT------SLgkSIA~al~ 375 (782)
T COG0466 338 YLAVQKLTKKLKGPILCLVGPPGVGKT------SLGKSIAKALG 375 (782)
T ss_pred HHHHHHHhccCCCcEEEEECCCCCCch------hHHHHHHHHhC
Confidence 445555443333468899999999999 45555544443
No 410
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.87 E-value=0.41 Score=54.04 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=38.1
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
.+..+|++ .....++|.|+||+||| +.+..++....+. +.+++.++...+. +.+..|
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKT-----tL~lq~a~~~a~~--g~~vlYvs~Ees~-~qi~~r 126 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKS-----TLLLQVAARLAAA--GGKVLYVSGEESA-SQIKLR 126 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEEccccH-HHHHHH
Confidence 35566653 23458999999999999 6666665555543 6788888865544 445444
No 411
>PRK02496 adk adenylate kinase; Provisional
Probab=90.78 E-value=0.16 Score=49.58 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=17.8
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++|.||||+||| |++..+...+
T Consensus 4 i~i~G~pGsGKs------t~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKG------TQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 689999999999 7777766544
No 412
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.77 E-value=0.15 Score=53.69 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=13.6
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
+.-+|.+||||||||
T Consensus 151 PknVLFyGppGTGKT 165 (368)
T COG1223 151 PKNVLFYGPPGTGKT 165 (368)
T ss_pred cceeEEECCCCccHH
Confidence 567899999999999
No 413
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=90.75 E-value=0.42 Score=54.58 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=39.3
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.+..++++ .....++|.|+|||||| ....+.+.+.+++ .+.++|..+-..... .+.++...
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT-----~l~~qf~~~~~~~-~ge~~lyis~ee~~~-~i~~~~~~ 81 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKT-----LFALQFLVNGIKR-FDEPGVFVTFEESPE-DIIRNVAS 81 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHH-----HHHHHHHHHHHHh-cCCCEEEEEccCCHH-HHHHHHHH
Confidence 34455643 34578999999999999 5555555554543 367888887766544 44444443
No 414
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=90.72 E-value=0.12 Score=48.80 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=16.8
Q ss_pred EeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 446 LEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 446 I~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
|.||||+||| |+++.+.+-+
T Consensus 1 i~G~PgsGK~------t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKG------TQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHH------HHHHHHHHHH
T ss_pred CcCCCCCChH------HHHHHHHHhc
Confidence 6899999999 8888877644
No 415
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.68 E-value=0.19 Score=41.57 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=21.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
.++|.||.|+||| ||..|+..++-.
T Consensus 25 ~tli~G~nGsGKS------TllDAi~~~L~~ 49 (62)
T PF13555_consen 25 VTLITGPNGSGKS------TLLDAIQTVLYG 49 (62)
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHcC
Confidence 6899999999999 888888766653
No 416
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=90.55 E-value=0.26 Score=53.72 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=23.1
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+.+-++|.|+|||||| |++.++..++.
T Consensus 24 ~~g~vli~G~~G~gKt------tl~r~~~~~~~ 50 (337)
T TIGR02030 24 KIGGVMVMGDRGTGKS------TAVRALAALLP 50 (337)
T ss_pred CCCeEEEEcCCCCCHH------HHHHHHHHhhc
Confidence 3567999999999999 88898888775
No 417
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=90.52 E-value=0.21 Score=57.24 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKL 492 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l 492 (651)
+..-++|+..++. +...+++.|||||||| |++.++..++....+...+-++..++.+..+
T Consensus 197 q~~~~~al~~aa~--~g~~vlliG~pGsGKT------tlar~l~~llp~~~~~~~le~~~i~s~~g~~ 256 (499)
T TIGR00368 197 QQHAKRALEIAAA--GGHNLLLFGPPGSGKT------MLASRLQGILPPLTNEEAIETARIWSLVGKL 256 (499)
T ss_pred cHHHHhhhhhhcc--CCCEEEEEecCCCCHH------HHHHHHhcccCCCCCcEEEeccccccchhhh
Confidence 3444555554443 3568999999999999 8888887776654555666666666655444
No 418
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.49 E-value=0.19 Score=62.98 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=39.4
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccccC----CCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHc
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLANE----NTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL 630 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~~----~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~ 630 (651)
.+|+||+|||+ |-|.|.-+--+..+... ++.+++|||+||- =++- .|-+..+|....+
T Consensus 377 ~~~~~iLIDEf-QDT~~~Q~~Il~~l~~~~~~~~~~lF~VGD~KQS------IY~F-RgAD~~~f~~a~~ 438 (1139)
T COG1074 377 EQYPHILIDEF-QDTDPQQWRILSRLFAGFKAGNRTLFLVGDPKQS------IYRF-RGADIFTFLEAAS 438 (1139)
T ss_pred hcCCeEEeecc-ccCCHHHHHHHHHHHhcCCCCCCceEEecCchHH------hhhh-cCCChHHHHHHhh
Confidence 36999999999 77888666555555443 3589999999994 1221 3445556655544
No 419
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.42 E-value=0.3 Score=53.90 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=26.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
.+.++|.||+|+||| +|+..++..+....+..+|+..
T Consensus 149 ~GlilI~G~TGSGKT-----T~l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 149 AGLGLICGETGSGKS-----TLAASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred CCEEEEECCCCCCHH-----HHHHHHHHHHHhcCCCceEEEE
Confidence 568999999999999 7776665555543344566554
No 420
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=90.41 E-value=0.48 Score=45.87 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=25.5
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
.++|.||+|+||| |+++.+.+.+.. .+.++..+
T Consensus 2 ~I~ieG~~GsGKt------T~~~~L~~~l~~-~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKT------TLIELLAERLEA-RGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHH-cCCeEEEE
Confidence 4689999999999 888888887764 45565444
No 421
>PRK14530 adenylate kinase; Provisional
Probab=90.40 E-value=0.17 Score=50.92 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=19.1
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+-++|.||||+||| |++..+.+.+
T Consensus 4 ~~I~i~G~pGsGKs------T~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKG------TQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHH------HHHHHHHHHh
Confidence 35789999999999 8877776544
No 422
>PF12846 AAA_10: AAA-like domain
Probab=90.35 E-value=0.4 Score=49.37 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=31.8
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCD 490 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD 490 (651)
+.++|.|++|+||| +++..++.+++.. +.+|++.=+...-.+
T Consensus 2 ~h~~i~G~tGsGKT-----~~~~~l~~~~~~~--g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKT-----TLLKNLLEQLIRR--GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHH-----HHHHHHHHHHHHc--CCCEEEEcCCchHHH
Confidence 46799999999999 8888888887775 566666666544444
No 423
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=90.33 E-value=0.25 Score=54.78 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=26.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
..-++|.|+|||||| .+|+.++.....+ .-+++-.|
T Consensus 179 ~~r~vL~Ge~GtGKS-----iaL~qa~h~a~~~---~wlIlhip 214 (461)
T KOG3928|consen 179 VKRFVLDGEPGTGKS-----IALAQAVHYAADQ---KWLILHIP 214 (461)
T ss_pred ceEEEEeCCCCCchh-----hHHHHHHHHHhcC---CeEEEECC
Confidence 346899999999999 9999999765543 34444444
No 424
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=90.29 E-value=0.81 Score=48.93 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=33.5
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc--CCCeEEEEeCC-CCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGAP-HNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~--~~~rvVLaGD~-~QL~PvV~S~ 613 (651)
+.+.++|||+|-.+++..+=--|..+-. .++.+||+.+. .+|.|+|+|.
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR 145 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR 145 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc
Confidence 5688999999987776543333332222 46788888876 8899988764
No 425
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=90.28 E-value=0.24 Score=54.51 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=35.8
Q ss_pred ccEEEEecCCCCChHhHHHHHhccccCC--CeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHc--CCccccc
Q 006311 567 FSHIFLIDASSATEPETMIVLGNLANEN--TRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL--TEAYRSC 637 (651)
Q Consensus 567 F~~IiIDEAsQatEpE~LIpL~~la~~~--~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~--~~~Y~~~ 637 (651)
+-++||||| |++..||+--|....... .-+|||-.- =.--+--.+.-.-+|+...||+||+- ..+|..+
T Consensus 279 pGVLFIDEv-HmLDiEcFsfLnralEs~~sPiiIlATNR-g~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ 351 (398)
T PF06068_consen 279 PGVLFIDEV-HMLDIECFSFLNRALESELSPIIILATNR-GITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEE 351 (398)
T ss_dssp E-EEEEESG-GGSBHHHHHHHHHHHTSTT--EEEEEES--SEEE-BTTS-EEETT--HHHHTTEEEEEE----HH
T ss_pred cceEEecch-hhccHHHHHHHHHHhcCCCCcEEEEecCc-eeeeccCccCcCCCCCCcchHhhcEEEECCCCCHH
Confidence 348999999 889999988887654321 134444221 11111111233347899999999954 5777764
No 426
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=90.24 E-value=0.47 Score=47.86 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=18.1
Q ss_pred HHHHHhc--cCCCceEEeCcCCCCCC
Q 006311 432 VHQILSF--EGQSPYLLEGPLCNNFV 455 (651)
Q Consensus 432 V~~iL~~--~~~~p~LI~GPPGTGKT 455 (651)
+..+|++ .....+.|.||||||||
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT 33 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKT 33 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHH
Confidence 4455553 34568899999999999
No 427
>PRK14528 adenylate kinase; Provisional
Probab=90.19 E-value=0.19 Score=49.62 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=17.9
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
-++|.||||+||| |++..+.+.+
T Consensus 3 ~i~i~G~pGsGKt------t~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKG------TQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 3689999999999 7777665443
No 428
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=90.15 E-value=0.9 Score=52.37 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=83.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHH--HHHHHhCCCCeEEEEccChhhH----HHHHH
Q 006311 421 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAV--LQIRRRSPKSRILICAPWNRTC----DKLME 494 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI--~qll~~~~~~rILVcApSNsAa----D~l~~ 494 (651)
...|-+-|-.||++-|- + -.-.+|..+.+|||| .+.|+. -.++. .+.+.|...|--+-| +...+
T Consensus 214 ~~eLlPVQ~laVe~GLL-e-G~nllVVSaTasGKT------LIgElAGi~~~l~--~g~KmlfLvPLVALANQKy~dF~~ 283 (830)
T COG1202 214 IEELLPVQVLAVEAGLL-E-GENLLVVSATASGKT------LIGELAGIPRLLS--GGKKMLFLVPLVALANQKYEDFKE 283 (830)
T ss_pred cceecchhhhhhhhccc-c-CCceEEEeccCCCcc------hHHHhhCcHHHHh--CCCeEEEEehhHHhhcchHHHHHH
Confidence 35788999999998663 1 234577789999999 666653 33344 377888877754444 45556
Q ss_pred HHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEec
Q 006311 495 CLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLID 574 (651)
Q Consensus 495 rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDE 574 (651)
|+.+ +.-..-+|++.. |--.. ++ -. ..+.-..++|||+|+.+...+...|-..|..-.|+|||
T Consensus 284 rYs~-LglkvairVG~s-rIk~~-----------~~-pv---~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDE 346 (830)
T COG1202 284 RYSK-LGLKVAIRVGMS-RIKTR-----------EE-PV---VVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDE 346 (830)
T ss_pred Hhhc-ccceEEEEechh-hhccc-----------CC-cc---ccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeee
Confidence 6643 222233666653 21000 00 00 01112578999999999988777666677888999999
Q ss_pred CCCCCh
Q 006311 575 ASSATE 580 (651)
Q Consensus 575 AsQatE 580 (651)
....-+
T Consensus 347 iHtL~d 352 (830)
T COG1202 347 IHTLED 352 (830)
T ss_pred eeeccc
Confidence 954433
No 429
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.12 E-value=0.52 Score=52.05 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=38.0
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
.+..+|++ .....++|.|+||+||| +.+..++..+.+. +.+|+..+...++ +.+..|.
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKS-----tLllq~a~~~a~~--g~~VlYvs~EEs~-~qi~~Ra 129 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKS-----TLLLQVAARLAKR--GGKVLYVSGEESP-EQIKLRA 129 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEECCcCH-HHHHHHH
Confidence 34566653 23458999999999999 6665555555543 5789888765543 4454443
No 430
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.12 E-value=0.32 Score=58.10 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=30.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 418 PYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 418 ~~~~~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.|.+....+..++++..++.. ..+.-+|++|||||||| +++.++...+
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT------~lakalA~e~ 511 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKT------LLAKAVATES 511 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHH------HHHHHHHHhc
Confidence 444444455666666555431 11223799999999999 7777776543
No 431
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=90.10 E-value=0.35 Score=51.85 Aligned_cols=44 Identities=11% Similarity=-0.058 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHhc--------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSF--------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~--------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..|+++|++++..++.. .....++|.|+||+||| |++..+.+.+
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKS------tvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKS------TLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHH------HHHHHHHHHc
Confidence 47899999999888853 13567889999999999 7777766543
No 432
>PRK06696 uridine kinase; Validated
Probab=90.10 E-value=0.51 Score=47.89 Aligned_cols=35 Identities=3% Similarity=0.054 Sum_probs=26.2
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 481 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV 481 (651)
++..+.|-|++|+||| |+++.+.+.+.. .+..+++
T Consensus 21 ~~~iI~I~G~sgsGKS------TlA~~L~~~l~~-~g~~v~~ 55 (223)
T PRK06696 21 RPLRVAIDGITASGKT------TFADELAEEIKK-RGRPVIR 55 (223)
T ss_pred CceEEEEECCCCCCHH------HHHHHHHHHHHH-cCCeEEE
Confidence 3456789999999999 888888887764 2445544
No 433
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.09 E-value=0.73 Score=51.43 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHhcc--CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChh
Q 006311 425 DSDSNSAVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNR 487 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~--~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNs 487 (651)
|.-=..|...+.... ...|.+|+||.|.||| +.+-++-.+..+..++.+|+..+..+-
T Consensus 95 N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKT-----HLl~Aign~~~~~~~~a~v~y~~se~f 154 (408)
T COG0593 95 NRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKT-----HLLQAIGNEALANGPNARVVYLTSEDF 154 (408)
T ss_pred hHHHHHHHHHHHhccCCcCCcEEEECCCCCCHH-----HHHHHHHHHHHhhCCCceEEeccHHHH
Confidence 443344444444332 3679999999999999 777777777778788889988876553
No 434
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=90.08 E-value=0.53 Score=46.08 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=25.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
..++|.|++|+||| |+++.+.+.+.. .+.++.++
T Consensus 4 ~~IvieG~~GsGKs------T~~~~L~~~l~~-~g~~v~~~ 37 (195)
T TIGR00041 4 MFIVIEGIDGAGKT------TQANLLKKLLQE-NGYDVLFT 37 (195)
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHHHH-cCCeEEEE
Confidence 35789999999999 888888777764 35556544
No 435
>PRK07261 topology modulation protein; Provisional
Probab=90.07 E-value=0.19 Score=49.02 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=18.0
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++|.|+||+||| |+++.+.+.+
T Consensus 3 i~i~G~~GsGKS------Tla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKS------TLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHH------HHHHHHHHHh
Confidence 689999999999 8887776543
No 436
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=90.06 E-value=0.54 Score=50.38 Aligned_cols=48 Identities=10% Similarity=0.134 Sum_probs=29.8
Q ss_pred HHHHHHHHhccCCC-ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 429 NSAVHQILSFEGQS-PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 429 ~~AV~~iL~~~~~~-p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
++++..+.-..+++ ..=|.|+||.||+ +.+-+++.++.+ .+.||-|.|
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKS-----Tli~~L~~~l~~--~G~rVaVlA 86 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKS-----TLIEALGRELRE--RGHRVAVLA 86 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchH-----HHHHHHHHHHHH--CCcEEEEEE
Confidence 34555554434455 4559999999999 455555555544 377765544
No 437
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.05 E-value=0.18 Score=47.27 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=16.8
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.++|.|+||+||| |++..+.+
T Consensus 1 li~l~G~~GsGKS------T~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKS------TVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHH------HHHHHHHh
Confidence 3689999999999 77776654
No 438
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=90.03 E-value=0.2 Score=56.03 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=20.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..+|+.|||||||| +++.++...+.
T Consensus 109 ~~iLl~Gp~GtGKT------~lAr~lA~~l~ 133 (412)
T PRK05342 109 SNILLIGPTGSGKT------LLAQTLARILD 133 (412)
T ss_pred ceEEEEcCCCCCHH------HHHHHHHHHhC
Confidence 57999999999999 88888776543
No 439
>PRK14527 adenylate kinase; Provisional
Probab=90.02 E-value=0.22 Score=49.14 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=18.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
...++|.||||+||| |++..+.+
T Consensus 6 ~~~i~i~G~pGsGKs------T~a~~La~ 28 (191)
T PRK14527 6 NKVVIFLGPPGAGKG------TQAERLAQ 28 (191)
T ss_pred CcEEEEECCCCCCHH------HHHHHHHH
Confidence 457899999999999 77766654
No 440
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.01 E-value=0.39 Score=45.55 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHH
Q 006311 425 DSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKL 492 (651)
Q Consensus 425 N~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l 492 (651)
|+++-.++...+.. ......++.|+.|+||| |++..+.+.+.. .--|.+||=+-+..+
T Consensus 4 s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKT------tl~~~l~~~lg~----~~~v~SPTf~lv~~Y 63 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKT------TLVQGLLQGLGI----QGNVTSPTFTLVNEY 63 (133)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHH------HHHHHHHHHcCC----CCcccCCCeeeeeec
Confidence 55666666666653 23557899999999999 777777665542 123677775444333
No 441
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=0.15 Score=55.75 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=17.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
+.-+|++|||||||| .++.|+..
T Consensus 127 ~kGiLL~GPpG~GKT------mlAKA~Ak 149 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKT------MLAKAIAK 149 (386)
T ss_pred CccceecCCCCchHH------HHHHHHHH
Confidence 345799999999999 66666643
No 442
>PRK06762 hypothetical protein; Provisional
Probab=89.91 E-value=0.2 Score=47.96 Aligned_cols=24 Identities=4% Similarity=0.070 Sum_probs=19.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.|+||+||| |++..+.+.+
T Consensus 3 ~li~i~G~~GsGKS------T~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKT------TIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHh
Confidence 46789999999999 8887776554
No 443
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=89.90 E-value=1.1 Score=44.49 Aligned_cols=36 Identities=11% Similarity=0.240 Sum_probs=27.2
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 485 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS 485 (651)
..+|.||=++||| .-|...+..+-. .+.++++.-|.
T Consensus 3 l~~i~GpM~sGKS-----~eLi~~~~~~~~--~~~~v~~~kp~ 38 (176)
T PF00265_consen 3 LEFITGPMFSGKS-----TELIRRIHRYEI--AGKKVLVFKPA 38 (176)
T ss_dssp EEEEEESTTSSHH-----HHHHHHHHHHHH--TT-EEEEEEES
T ss_pred EEEEECCcCChhH-----HHHHHHHHHHHh--CCCeEEEEEec
Confidence 5789999999999 777777765544 37888887773
No 444
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.89 E-value=0.53 Score=53.31 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=39.1
Q ss_pred HHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 430 SAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 430 ~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
..+..+|++ .....++|.|+||+||| +.+..++.++.+. +.++|..+.-.+. +.+..|.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKT-----TL~lq~a~~~a~~--g~kvlYvs~EEs~-~qi~~ra 141 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKS-----TLLLQVACQLAKN--QMKVLYVSGEESL-QQIKMRA 141 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHH-----HHHHHHHHHHHhc--CCcEEEEECcCCH-HHHHHHH
Confidence 345666753 34568999999999999 6666666655553 5688888776554 4444443
No 445
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=89.88 E-value=0.35 Score=53.01 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 427 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 427 ~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
+.+.|+...+-..+.+=++|.||+||||| |++.++..++..
T Consensus 24 ~~k~al~~~~~~p~~~~vli~G~~GtGKs------~~ar~~~~~l~~ 64 (350)
T CHL00081 24 EMKLALILNVIDPKIGGVMIMGDRGTGKS------TTIRALVDLLPE 64 (350)
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCCCCHH------HHHHHHHHHHhh
Confidence 34444444332233456899999999999 888988887764
No 446
>PRK00279 adk adenylate kinase; Reviewed
Probab=89.88 E-value=0.21 Score=50.30 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=17.2
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
++|.||||+||| |+++.+.+.
T Consensus 3 I~v~G~pGsGKs------T~a~~la~~ 23 (215)
T PRK00279 3 LILLGPPGAGKG------TQAKFIAEK 23 (215)
T ss_pred EEEECCCCCCHH------HHHHHHHHH
Confidence 689999999999 777766543
No 447
>PRK06547 hypothetical protein; Provisional
Probab=89.88 E-value=0.28 Score=48.20 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=19.9
Q ss_pred cCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 439 EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 439 ~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
.+...++|.||+|+||| |++..+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKT------t~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKT------TLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHH------HHHHHHHHH
Confidence 34556788899999999 777776654
No 448
>PRK06851 hypothetical protein; Provisional
Probab=89.84 E-value=0.31 Score=53.72 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=30.3
Q ss_pred HHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE--EccChhhHHH
Q 006311 432 VHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI--CAPWNRTCDK 491 (651)
Q Consensus 432 V~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV--cApSNsAaD~ 491 (651)
+..++. .-...++|.|||||||| +.+..++.++.++ +.+|.+ |+.-+...|.
T Consensus 206 ~~~l~~-~~~~~~~i~G~pG~GKs-----tl~~~i~~~a~~~--G~~v~~~hC~~dPdslD~ 259 (367)
T PRK06851 206 VPSLTE-GVKNRYFLKGRPGTGKS-----TMLKKIAKAAEER--GFDVEVYHCGFDPDSLDM 259 (367)
T ss_pred HHhHhc-ccceEEEEeCCCCCcHH-----HHHHHHHHHHHhC--CCeEEEEeCCCCCCCcce
Confidence 444443 12567999999999999 5544444444443 555544 4444444443
No 449
>PRK12608 transcription termination factor Rho; Provisional
Probab=89.83 E-value=0.52 Score=52.05 Aligned_cols=63 Identities=8% Similarity=0.114 Sum_probs=35.1
Q ss_pred HHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCC--eEEEEccChhhHHHHHHHHHh
Q 006311 431 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS--RILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 431 AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~--rILVcApSNsAaD~l~~rL~~ 498 (651)
+|..++-...-.-.+|.|||||||| +.+..++..+..+.++. .++.+.....-++.+.+.+..
T Consensus 123 vID~l~PiGkGQR~LIvG~pGtGKT-----TLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~ 187 (380)
T PRK12608 123 VVDLVAPIGKGQRGLIVAPPRAGKT-----VLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKG 187 (380)
T ss_pred hhhheeecCCCceEEEECCCCCCHH-----HHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhh
Confidence 5555442211234599999999999 55545444444443333 344455555555555555543
No 450
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.82 E-value=1.2 Score=52.13 Aligned_cols=54 Identities=6% Similarity=0.126 Sum_probs=38.9
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc-cChhhHHHHHHHHHhhC
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA-PWNRTCDKLMECLMKDI 500 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA-pSNsAaD~l~~rL~~~l 500 (651)
.+..++|.|-.|+||| +-|+..+++-- .....++.|| |-..||=-++.|+...+
T Consensus 370 ~n~vvvivgETGSGKT-----TQl~QyL~edG--Y~~~GmIGcTQPRRvAAiSVAkrVa~EM 424 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKT-----TQLAQYLYEDG--YADNGMIGCTQPRRVAAISVAKRVAEEM 424 (1042)
T ss_pred hCcEEEEEecCCCCch-----hhhHHHHHhcc--cccCCeeeecCchHHHHHHHHHHHHHHh
Confidence 4779999999999999 77776555422 2344566666 56678888889988744
No 451
>PRK05541 adenylylsulfate kinase; Provisional
Probab=89.78 E-value=0.37 Score=46.70 Aligned_cols=27 Identities=7% Similarity=0.017 Sum_probs=21.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
+..+++.|+||+||| |++.++...+..
T Consensus 7 ~~~I~i~G~~GsGKs------t~a~~l~~~l~~ 33 (176)
T PRK05541 7 GYVIWITGLAGSGKT------TIAKALYERLKL 33 (176)
T ss_pred CCEEEEEcCCCCCHH------HHHHHHHHHHHH
Confidence 346789999999999 888877776654
No 452
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.78 E-value=0.3 Score=59.46 Aligned_cols=48 Identities=17% Similarity=0.042 Sum_probs=31.3
Q ss_pred HHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh------CCCCeEEEE
Q 006311 429 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR------SPKSRILIC 482 (651)
Q Consensus 429 ~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~------~~~~rILVc 482 (651)
..-+..||......-.+++|||||||| ++++++.+.+.. ..+.+++..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT------~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKT------AIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHH------HHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 334444555444556789999999999 777877765532 125666654
No 453
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=89.76 E-value=0.2 Score=50.22 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=16.5
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
++|.||||+||| |++..+.+
T Consensus 2 I~i~G~pGsGKs------T~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKG------TQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 589999999999 77776654
No 454
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.75 E-value=0.17 Score=48.21 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=16.4
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
++|.||||+||| |++..+.+.
T Consensus 1 i~l~G~~GsGKS------Tla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKS------TIASALAHR 21 (163)
T ss_pred CEEECCCCCCHH------HHHHHHHHh
Confidence 368899999999 777666543
No 455
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.73 E-value=0.24 Score=46.34 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=18.2
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++|.||||+||| |++..+.+.+
T Consensus 2 i~l~G~~GsGKs------tla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKT------TVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHH------HHHHHHHHHh
Confidence 689999999999 8887776544
No 456
>PRK08233 hypothetical protein; Provisional
Probab=89.72 E-value=0.17 Score=48.65 Aligned_cols=24 Identities=4% Similarity=-0.103 Sum_probs=19.1
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+.|.|+||+||| |+++.+.+.+
T Consensus 4 ~iI~I~G~~GsGKt------Tla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKT------TLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHH------HHHHHHHhhC
Confidence 35678999999999 8887776544
No 457
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=89.71 E-value=0.22 Score=49.34 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=18.1
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
++|.||||+||| |++..+.+.
T Consensus 3 iiilG~pGaGK~------T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKS------TLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHH------HHHHHHHHH
Confidence 589999999999 888877665
No 458
>PLN02200 adenylate kinase family protein
Probab=89.68 E-value=0.21 Score=51.43 Aligned_cols=24 Identities=8% Similarity=-0.116 Sum_probs=18.9
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.|||||||| |+++.+.+.+
T Consensus 44 ~ii~I~G~PGSGKs------T~a~~La~~~ 67 (234)
T PLN02200 44 FITFVLGGPGSGKG------TQCEKIVETF 67 (234)
T ss_pred EEEEEECCCCCCHH------HHHHHHHHHh
Confidence 45789999999999 8777776533
No 459
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.58 E-value=0.27 Score=59.18 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=21.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+.++++|||||||| +++.++...+.
T Consensus 347 ~~~lll~GppG~GKT------~lAk~iA~~l~ 372 (775)
T TIGR00763 347 GPILCLVGPPGVGKT------SLGKSIAKALN 372 (775)
T ss_pred CceEEEECCCCCCHH------HHHHHHHHHhc
Confidence 346899999999999 77777776554
No 460
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=89.57 E-value=2.4 Score=52.41 Aligned_cols=151 Identities=11% Similarity=0.006 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhc----c---CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 427 DSNSAVHQILSF----E---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 427 ~Q~~AV~~iL~~----~---~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
.|..||..++.. . ...-.+||==-||||| .|++-+...+++.....+|++++--+.--+++.+-+...
T Consensus 252 ~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKT-----lTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~ 326 (962)
T COG0610 252 AQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKT-----LTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSF 326 (962)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchH-----HHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHH
Confidence 366666644332 1 1234799999999999 999998888888766779999999999998888887651
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhc--ccceEeeehhcchhhhhcC----CCCCCccEEEEe
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELR--QYKVISSTFVSSFRLHNQG----ITAGHFSHIFLI 573 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~--~~rIVvtT~ssa~~l~~~~----~~~~~F~~IiID 573 (651)
-......+ .+. +. ..++ +.|. ..+||+||---.+...... .... ==+||+|
T Consensus 327 ~~~~~~~~-~~~-----s~-~~Lk---------------~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~-~ivvI~D 383 (962)
T COG0610 327 GKVAFNDP-KAE-----ST-SELK---------------ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRK-NVVVIID 383 (962)
T ss_pred HHhhhhcc-ccc-----CH-HHHH---------------HHHhcCCCcEEEEEecccchhhhcccccccCCC-cEEEEEe
Confidence 11100000 000 00 0111 1122 3479999987665544221 1112 2278999
Q ss_pred cCCCCChHhHHHHHhccccCCCeEEEEeCCCC
Q 006311 574 DASSATEPETMIVLGNLANENTRVIVTGAPHN 605 (651)
Q Consensus 574 EAsQatEpE~LIpL~~la~~~~rvVLaGD~~Q 605 (651)
||...-..+.---+........-+=+.|.|-+
T Consensus 384 EaHRSQ~G~~~~~~~~~~~~a~~~gFTGTPi~ 415 (962)
T COG0610 384 EAHRSQYGELAKLLKKALKKAIFIGFTGTPIF 415 (962)
T ss_pred chhhccccHHHHHHHHHhccceEEEeeCCccc
Confidence 99776666544333322223345557777543
No 461
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=89.44 E-value=0.33 Score=50.49 Aligned_cols=35 Identities=11% Similarity=0.310 Sum_probs=25.5
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
-.+|.|++||||| +.+..++..+.+. ..+|.++|+
T Consensus 15 r~viIG~sGSGKT-----~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKT-----TLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHH-----HHHHHHHHhhccc--CCEEEEEec
Confidence 4689999999999 6666655543333 478888877
No 462
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=89.43 E-value=0.7 Score=49.90 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
++.-++.++.+-.. ....|++|.|.+||||+ ++|.+|.....
T Consensus 12 S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~------~lA~~iH~~s~ 54 (326)
T PRK11608 12 ANSFLEVLEQVSRLAPLDKPVLIIGERGTGKE------LIASRLHYLSS 54 (326)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHH------HHHHHHHHhCC
Confidence 33444444443332 24789999999999999 88888875433
No 463
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=89.42 E-value=0.61 Score=49.08 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=27.3
Q ss_pred HHHHHHHHHhccCCC-ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeE--EEEccCh
Q 006311 428 SNSAVHQILSFEGQS-PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI--LICAPWN 486 (651)
Q Consensus 428 Q~~AV~~iL~~~~~~-p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rI--LVcApSN 486 (651)
-.+.+..+....++. ..=|.||||.||+ +.+-+++..+.+. +.+| |.+-||.
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKS-----Tli~~l~~~~~~~--g~~VaVlAVDPSS 69 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKS-----TLIDALIRELRER--GKRVAVLAVDPSS 69 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHH-----HHHHHHHHHHHHT--T--EEEEEE-GGG
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHH-----HHHHHHHHHHhhc--CCceEEEEECCCC
Confidence 344555555433333 3448999999999 5555555555543 6665 5555653
No 464
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=89.42 E-value=0.24 Score=54.13 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=47.8
Q ss_pred ccEEEEecCCCCChHhHHHHHhcccc-CCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHH--cCCccccc
Q 006311 567 FSHIFLIDASSATEPETMIVLGNLAN-ENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLC--LTEAYRSC 637 (651)
Q Consensus 567 F~~IiIDEAsQatEpE~LIpL~~la~-~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~--~~~~Y~~~ 637 (651)
.-++||||| +++.-||+--|..... .-.-+|+.--.+-+.++--.++..-+|+...|+.||+ ...+|.++
T Consensus 292 pGVLFIDEv-HmLDIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~ 364 (450)
T COG1224 292 PGVLFIDEV-HMLDIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSRE 364 (450)
T ss_pred cceEEEech-hhhhHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHH
Confidence 348999999 7788888777764322 2234555555555655555555556899999999994 46788775
No 465
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.38 E-value=0.22 Score=53.31 Aligned_cols=13 Identities=31% Similarity=0.245 Sum_probs=11.9
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-+|++|||||||+
T Consensus 168 giLLyGPPGTGKS 180 (439)
T KOG0739|consen 168 GILLYGPPGTGKS 180 (439)
T ss_pred eEEEeCCCCCcHH
Confidence 4699999999999
No 466
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.27 E-value=0.38 Score=57.78 Aligned_cols=35 Identities=17% Similarity=0.046 Sum_probs=24.1
Q ss_pred HHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 431 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 431 AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
-+..+|........+|+|||||||| ++++++.+.+
T Consensus 197 ~~i~iL~r~~~~n~LLvGppGvGKT------~lae~la~~i 231 (758)
T PRK11034 197 RAIQVLCRRRKNNPLLVGESGVGKT------AIAEGLAWRI 231 (758)
T ss_pred HHHHHHhccCCCCeEEECCCCCCHH------HHHHHHHHHH
Confidence 3334565444556689999999999 6777766543
No 467
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.26 E-value=0.4 Score=51.95 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=31.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc-cChhhH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA-PWNRTC 489 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA-pSNsAa 489 (651)
+-.+++.|..|+||| +||+.+...+.+. +.+|++.| .|=.|+
T Consensus 139 p~Vil~vGVNG~GKT-----TTIaKLA~~l~~~--g~~VllaA~DTFRAa 181 (340)
T COG0552 139 PFVILFVGVNGVGKT-----TTIAKLAKYLKQQ--GKSVLLAAGDTFRAA 181 (340)
T ss_pred cEEEEEEecCCCchH-----hHHHHHHHHHHHC--CCeEEEEecchHHHH
Confidence 345689999999999 9999988877665 77766654 465544
No 468
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.22 E-value=0.38 Score=60.03 Aligned_cols=41 Identities=15% Similarity=0.364 Sum_probs=28.0
Q ss_pred CCccEEEEecCCCCChHhHHHHHhccccCC--CeEEEEeCCCCC
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLANEN--TRVIVTGAPHNS 606 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~~~--~rvVLaGD~~QL 606 (651)
..|++|+|||. |-|.|.-.--+..++..+ +.+++||||+|-
T Consensus 295 ~ry~~vLVDEF-QDTd~~Q~~il~~L~~~~~~~~L~~VGDpKQS 337 (1087)
T TIGR00609 295 EQYPIALIDEF-QDTDPQQYRIFSKLFIAQKTTSLFLIGDPKQA 337 (1087)
T ss_pred hCCCEEEEECC-cCCCHHHHHHHHHHHhCCCCCeEEEEECCccc
Confidence 36999999999 455554333344344322 379999999994
No 469
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=89.22 E-value=0.52 Score=49.59 Aligned_cols=48 Identities=17% Similarity=0.062 Sum_probs=34.4
Q ss_pred CCccEEEEecCCCCChHhHHHHHhcccc---CCCeEEEEeC-CCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVTGA-PHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~la~---~~~rvVLaGD-~~QL~PvV~S~ 613 (651)
+.+.++|||+|-.+++..+ =+|...-. .++-++|+.+ +.++.|+|+|.
T Consensus 87 ~~~KV~II~~ae~m~~~Aa-NaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SR 138 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQSA-NSLLKLIEEPPKNTYGIFTTRNENNILNTILSR 138 (261)
T ss_pred CCCEEEEeccHhhhCHHHH-HHHHHhhcCCCCCeEEEEEECChHhCchHhhhh
Confidence 4588999999987776443 33433332 4677888777 88999999986
No 470
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=89.21 E-value=0.38 Score=49.56 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=23.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
.+++.|+||+||| |++..+.+.+.. .+.++.+.
T Consensus 1 LIvl~G~pGSGKS------T~a~~La~~l~~-~~~~v~~i 33 (249)
T TIGR03574 1 LIILTGLPGVGKS------TFSKELAKKLSE-KNIDVIIL 33 (249)
T ss_pred CEEEEcCCCCCHH------HHHHHHHHHHHH-cCCceEEE
Confidence 3689999999999 888877776654 23444433
No 471
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=89.18 E-value=0.26 Score=48.78 Aligned_cols=20 Identities=10% Similarity=-0.054 Sum_probs=16.7
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
..+|.|.|||||| |+++.+.
T Consensus 2 ~I~ITGTPGvGKT------T~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKT------TVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchH------HHHHHHH
Confidence 4689999999999 7777665
No 472
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.11 E-value=0.42 Score=58.26 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=21.2
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
.++++.||+||||| +++.++.+.+..
T Consensus 599 ~~~Lf~Gp~G~GKT------~lA~aLa~~l~~ 624 (857)
T PRK10865 599 GSFLFLGPTGVGKT------ELCKALANFMFD 624 (857)
T ss_pred ceEEEECCCCCCHH------HHHHHHHHHhhc
Confidence 36899999999999 777887776653
No 473
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=89.04 E-value=0.18 Score=48.27 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=15.1
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
++|.|+|||||| ||++.+.+.
T Consensus 2 I~i~G~~stGKT------TL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKT------TLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHH------HHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHc
Confidence 579999999999 777766643
No 474
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.03 E-value=0.26 Score=50.74 Aligned_cols=22 Identities=14% Similarity=-0.040 Sum_probs=18.2
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+|.||||+||| |++..+.+.+
T Consensus 9 Ivl~G~PGsGK~------T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKG------TFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 789999999999 8877776543
No 475
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=89.02 E-value=0.22 Score=47.16 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=27.5
Q ss_pred cEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCCCcc---c--cCh--HHHhCCCCccHHHHHH
Q 006311 568 SHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSR---V--RSD--IARKNGLKMSYFERLC 629 (651)
Q Consensus 568 ~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL~Pv---V--~S~--~a~~~GL~~SLfERL~ 629 (651)
.++++||--.+.. .+--+|...- ...+|=+-|....||.- + .++ .+.-+.|..+++.|++
T Consensus 64 ~ill~DEiNrapp-ktQsAlLeam-~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 64 NILLADEINRAPP-KTQSALLEAM-EERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SEEEEETGGGS-H-HHHHHHHHHH-HHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ceeeecccccCCH-HHHHHHHHHH-HcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 4789999877653 3333332111 12377777777778771 1 122 2233556667776654
No 476
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=88.93 E-value=0.63 Score=49.73 Aligned_cols=50 Identities=6% Similarity=-0.087 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
|+...+..+..+...+...+-|.|+||+||| |+.+.+...+.. ..++.|.
T Consensus 88 n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKT------TLl~~l~~~l~~--~~~~~VI 137 (290)
T PRK10463 88 NNRLAERNRARFAARKQLVLNLVSSPGSGKT------TLLTETLMRLKD--SVPCAVI 137 (290)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCCCCCHH------HHHHHHHHHhcc--CCCEEEE
Confidence 5556666666555444556779999999999 666666555543 3455554
No 477
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=88.90 E-value=0.62 Score=47.67 Aligned_cols=50 Identities=10% Similarity=0.055 Sum_probs=33.9
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHH----------hCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR----------RSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~----------~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..+|.|||||||| +....+...+.. ...+.+||+.+--+.+ +.+.+|+..
T Consensus 3 ~~ll~g~~G~GKS-----~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~-~~i~~Rl~~ 62 (239)
T cd01125 3 VSALVAPGGTGKS-----SLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR-EEIHRRLEA 62 (239)
T ss_pred eeEEEcCCCCCHH-----HHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH-HHHHHHHHH
Confidence 4689999999999 555555554432 1245689888866654 467777765
No 478
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.85 E-value=0.38 Score=60.32 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=27.1
Q ss_pred CCccEEEEecCCCCChHh--HHHHHhcc--cc------CCCeEEEEeCCCCC
Q 006311 565 GHFSHIFLIDASSATEPE--TMIVLGNL--AN------ENTRVIVTGAPHNS 606 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE--~LIpL~~l--a~------~~~rvVLaGD~~QL 606 (651)
..|+||+|||+......+ .+-+|..- .. ....+++|||++|-
T Consensus 390 ~r~~~iLVDEFQDTs~~Q~~il~~L~~~~~~g~~~~~~~~~~lf~VGD~kQS 441 (1141)
T TIGR02784 390 RGIDHILVDEAQDTSPEQWDIIQALAEEFFSGEGARSGVERTIFAVGDEKQS 441 (1141)
T ss_pred cCCCEEEEECCcCCCHHHHHHHHHHHHhhcccccccCCCCCeEEEEeCCccc
Confidence 369999999995555443 33333310 00 13589999999994
No 479
>PRK09087 hypothetical protein; Validated
Probab=88.81 E-value=0.26 Score=50.51 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=17.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
.++++|+||+|+||| +++.++.
T Consensus 44 ~~~l~l~G~~GsGKT------hLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKT------HLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHH------HHHHHHH
Confidence 456999999999999 6655544
No 480
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=88.80 E-value=0.87 Score=49.33 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=22.8
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...|++|.|++||||+ ++|.+|...-.
T Consensus 21 ~~~pVLI~GE~GtGK~------~lAr~iH~~s~ 47 (329)
T TIGR02974 21 LDRPVLIIGERGTGKE------LIAARLHYLSK 47 (329)
T ss_pred CCCCEEEECCCCChHH------HHHHHHHHhcC
Confidence 4789999999999999 88888876544
No 481
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=0.51 Score=55.00 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=31.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh----c---------cCCCceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 416 LCPYSNYKLDSDSNSAVHQILS----F---------EGQSPYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 416 ~~~~~~~~LN~~Q~~AV~~iL~----~---------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
...|.+..=.++++..++..+. . +.+.=+|++|||||||| +++.++.
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT------~lAkalA 489 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKT------LLAKALA 489 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchH------HHHHHHh
Confidence 4567766666777766664432 1 12445899999999999 6666554
No 482
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=88.76 E-value=0.7 Score=55.77 Aligned_cols=123 Identities=11% Similarity=-0.004 Sum_probs=66.2
Q ss_pred EEeCcCCCCCCCCchhHHHHHHH-HHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHHH
Q 006311 445 LLEGPLCNNFVLSKTGNVVREAV-LQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIF 523 (651)
Q Consensus 445 LI~GPPGTGKT~s~~~~TlveaI-~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~ 523 (651)
+..-..|+||| .+.+-++ ++.+ .+..|-|+|||..-|..-++.+........ +.++.. ....+..
T Consensus 98 Iaem~TGeGKT-----Lva~lpa~l~aL---~G~~V~IvTpn~yLA~rd~e~~~~l~~~LG-lsv~~i---~~~~~~~-- 163 (830)
T PRK12904 98 IAEMKTGEGKT-----LVATLPAYLNAL---TGKGVHVVTVNDYLAKRDAEWMGPLYEFLG-LSVGVI---LSGMSPE-- 163 (830)
T ss_pred hhhhhcCCCcH-----HHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHHhhcC-CeEEEE---cCCCCHH--
Confidence 45668999999 5544333 2333 366788999998777766666554111000 001100 0011111
Q ss_pred HhhhccccccCCChhhhhcccceEeeehhcchhhh-hcCC-------CCCCccEEEEecCCCCChHhHHHHHhccccCCC
Q 006311 524 QVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGI-------TAGHFSHIFLIDASSATEPETMIVLGNLANENT 595 (651)
Q Consensus 524 ~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~-~~~~-------~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~ 595 (651)
.+.....++|+++|..-.+.-+ ..++ ....|.++|||||-.+.--| ..+
T Consensus 164 -------------er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDe----------Art 220 (830)
T PRK12904 164 -------------ERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDE----------ART 220 (830)
T ss_pred -------------HHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheecc----------CCC
Confidence 1122235789999998764322 1111 12358899999997654333 234
Q ss_pred eEEEEeCCC
Q 006311 596 RVIVTGAPH 604 (651)
Q Consensus 596 rvVLaGD~~ 604 (651)
-+|+.|-..
T Consensus 221 pLiiSg~~~ 229 (830)
T PRK12904 221 PLIISGPAE 229 (830)
T ss_pred ceeeECCCC
Confidence 566666644
No 483
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.75 E-value=0.46 Score=53.29 Aligned_cols=51 Identities=4% Similarity=-0.009 Sum_probs=32.6
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc-C-hhhHHHHHHHHHh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP-W-NRTCDKLMECLMK 498 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp-S-NsAaD~l~~rL~~ 498 (651)
..+++.||+|+||| +|++.++.+.... .+.+|++.+- + ..|+...+.++.+
T Consensus 224 ~vi~lvGptGvGKT-----TtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yAe 276 (432)
T PRK12724 224 KVVFFVGPTGSGKT-----TSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYAD 276 (432)
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHHH
Confidence 35789999999999 8888777655332 3667765543 3 2344444455544
No 484
>PRK13947 shikimate kinase; Provisional
Probab=88.75 E-value=0.29 Score=46.93 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=18.7
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+|.|+|||||| |++..+.+.+
T Consensus 3 ~I~l~G~~GsGKs------t~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKT------TVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHH------HHHHHHHHHh
Confidence 3689999999999 8887776654
No 485
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=88.72 E-value=0.57 Score=45.99 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=31.2
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.++|.||+|+||| +.++-. ... .+.+++..+-....-+.+.+|+..
T Consensus 1 ~~li~G~~~sGKS------~~a~~~---~~~-~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 1 IILVTGGARSGKS------RFAERL---AAE-LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred CEEEECCCCCCHH------HHHHHH---HHh-cCCCeEEEEccCcCCHHHHHHHHH
Confidence 3689999999999 555433 222 356777777666666667777654
No 486
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=88.71 E-value=0.51 Score=52.90 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=32.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEE----EE-ccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL----IC-APWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rIL----Vc-ApSNsAaD~l~~rL~~ 498 (651)
+.-++++|||||||| +++.++...+.. +..++= +. .....-++.+.+++..
T Consensus 47 p~~ILLiGppG~GKT------~lAraLA~~l~~-~fi~vdat~~~e~g~vG~dvE~i~r~l~e 102 (441)
T TIGR00390 47 PKNILMIGPTGVGKT------EIARRLAKLANA-PFIKVEATKFTEVGYVGRDVESMVRDLTD 102 (441)
T ss_pred CceEEEECCCCCCHH------HHHHHHHHHhCC-eEEEeecceeecCCcccCCHHHHHHHHHH
Confidence 356899999999999 888888776653 333332 21 2334445666666654
No 487
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=88.70 E-value=0.68 Score=54.93 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=25.5
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 481 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV 481 (651)
...|++|.|++||||| ++|.+|...... .+...+.
T Consensus 398 ~~~pVLI~GE~GTGK~------~lA~~ih~~s~r-~~~~~v~ 432 (686)
T PRK15429 398 SDSTVLILGETGTGKE------LIARAIHNLSGR-NNRRMVK 432 (686)
T ss_pred CCCCEEEECCCCcCHH------HHHHHHHHhcCC-CCCCeEE
Confidence 4679999999999999 788888765432 3444443
No 488
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.70 E-value=2.4 Score=51.03 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHH-------HHh----------------------
Q 006311 424 LDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI-------RRR---------------------- 473 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql-------l~~---------------------- 473 (651)
.=+-|+.-+.+++.+ .+.--.++.-|.|||||+|.++.|++=.-.+- +..
T Consensus 22 pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~ 101 (945)
T KOG1132|consen 22 PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAG 101 (945)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhhc
Confidence 356799999999876 22223689999999999766666665211110 000
Q ss_pred CC------CCeEEEEccChhhHHHHHHHHHh
Q 006311 474 SP------KSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 474 ~~------~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.+ ..+|..++.||+-..++++.+..
T Consensus 102 e~~~~~~~ipkIyyaSRTHsQltQvvrElrr 132 (945)
T KOG1132|consen 102 EPIACYTGIPKIYYASRTHSQLTQVVRELRR 132 (945)
T ss_pred CccccccCCceEEEecchHHHHHHHHHHHhh
Confidence 02 34799999999999999999976
No 489
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=0.35 Score=54.58 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFV 455 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT 455 (651)
.=.+.=|+|+.-+.. +..-.+++||||||||
T Consensus 182 ~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKT 212 (490)
T COG0606 182 KGQEQAKRALEIAAA--GGHNLLLVGPPGTGKT 212 (490)
T ss_pred cCcHHHHHHHHHHHh--cCCcEEEecCCCCchH
Confidence 335555666665443 2446799999999999
No 490
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=0.28 Score=54.39 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=24.3
Q ss_pred CCCCCCCHHHHHHHHHHHhc-----cCCC---ceEEeCcCCCCCCC
Q 006311 419 YSNYKLDSDSNSAVHQILSF-----EGQS---PYLLEGPLCNNFVL 456 (651)
Q Consensus 419 ~~~~~LN~~Q~~AV~~iL~~-----~~~~---p~LI~GPPGTGKT~ 456 (651)
+.+--|.++=..-|..+... ..+. -++.+|||||||||
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm 399 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTM 399 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchH
Confidence 33445666666666665532 1233 36899999999993
No 491
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.64 E-value=0.58 Score=52.93 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=27.2
Q ss_pred CCccEEEEecCCCCChHh--HHHHHhccccCCCeEEEEeC-CCCCCccccC
Q 006311 565 GHFSHIFLIDASSATEPE--TMIVLGNLANENTRVIVTGA-PHNSPSRVRS 612 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE--~LIpL~~la~~~~rvVLaGD-~~QL~PvV~S 612 (651)
+.+.+||||||..++... +|+-...-....+.+|++.+ .+.|.+.+.|
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~s 170 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS 170 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHH
Confidence 357899999998776532 22222111123556777764 4556665554
No 492
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=0.52 Score=50.40 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=23.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCC
Q 006311 418 PYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFV 455 (651)
Q Consensus 418 ~~~~~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT 455 (651)
.|.+..==++|.+-++..+.. ..+.=++++|+||||||
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKT 233 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKT 233 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchh
Confidence 344433345666666655432 12334899999999999
No 493
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=88.59 E-value=0.91 Score=55.06 Aligned_cols=115 Identities=7% Similarity=-0.077 Sum_probs=61.2
Q ss_pred EEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhcccc-c-cccCCcHHH
Q 006311 445 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAF-R-EADGVSDEI 522 (651)
Q Consensus 445 LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~-R-~~~~v~~~l 522 (651)
+.+-+.|+||| .+.+-.++ +....+..|.|+|++.--|...++.+.. +++...-+ . .....+..
T Consensus 99 IaEm~TGEGKT-----L~a~lp~~--l~al~g~~VhIvT~ndyLA~RD~e~m~~------l~~~lGlsv~~i~~~~~~~- 164 (908)
T PRK13107 99 IAEMRTGEGKT-----LTATLPAY--LNALTGKGVHVITVNDYLARRDAENNRP------LFEFLGLTVGINVAGLGQQ- 164 (908)
T ss_pred cccccCCCCch-----HHHHHHHH--HHHhcCCCEEEEeCCHHHHHHHHHHHHH------HHHhcCCeEEEecCCCCHH-
Confidence 45568999999 55443332 2334577799999998777666665543 11110000 0 00011110
Q ss_pred HHhhhccccccCCChhhhhcccceEeeehhcchhhh--hc-CCCC-----CCccEEEEecCCCCChHhHHHHH
Q 006311 523 FQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH--NQ-GITA-----GHFSHIFLIDASSATEPETMIVL 587 (651)
Q Consensus 523 ~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~--~~-~~~~-----~~F~~IiIDEAsQatEpE~LIpL 587 (651)
.+...-.+.|+.+|..-.|.-+ .. .+.. ..|.++|||||-.+.--|+-.||
T Consensus 165 --------------~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPL 223 (908)
T PRK13107 165 --------------EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPL 223 (908)
T ss_pred --------------HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCce
Confidence 1112235688888888663322 11 1111 34788999999766544443333
No 494
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.52 E-value=0.5 Score=45.72 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=25.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
..++|.|+||+||| |++..+...+.. .+..+.+.
T Consensus 5 ~~i~~~G~~GsGKS------T~a~~la~~l~~-~g~~v~~i 38 (175)
T PRK00889 5 VTVWFTGLSGAGKT------TIARALAEKLRE-AGYPVEVL 38 (175)
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHHHH-cCCeEEEE
Confidence 46789999999999 888888777764 34455544
No 495
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=88.48 E-value=0.36 Score=54.11 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=32.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE-----ccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-----APWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc-----ApSNsAaD~l~~rL~~ 498 (651)
+..+++.|||||||| +++.++...+.. +-.++=.. ......++.+.+++..
T Consensus 50 ~~~ILliGp~G~GKT------~LAr~LAk~l~~-~fi~vD~t~f~e~GyvG~d~e~~ir~L~~ 105 (443)
T PRK05201 50 PKNILMIGPTGVGKT------EIARRLAKLANA-PFIKVEATKFTEVGYVGRDVESIIRDLVE 105 (443)
T ss_pred CceEEEECCCCCCHH------HHHHHHHHHhCC-hheeecchhhccCCcccCCHHHHHHHHHH
Confidence 357899999999999 888888777653 33333211 1233345555555544
No 496
>PRK13909 putative recombination protein RecB; Provisional
Probab=88.33 E-value=0.4 Score=58.75 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=27.9
Q ss_pred CCccEEEEecCCCCChHh--HHHHHhc--cccC----CCeEEEEeCCCCC
Q 006311 565 GHFSHIFLIDASSATEPE--TMIVLGN--LANE----NTRVIVTGAPHNS 606 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE--~LIpL~~--la~~----~~rvVLaGD~~QL 606 (651)
..|+||+|||+......+ .+-+|.. ++.. .+.+++|||++|-
T Consensus 327 ~~~~~ilVDEfQDTs~~Q~~il~~L~~~~~~~~~~~~~~~lf~VGD~kQS 376 (910)
T PRK13909 327 SKISHILIDEFQDTSVLQYKILLPLIDEIKSGEGQKKFRSFFYVGDVKQS 376 (910)
T ss_pred cCCCEEEEECccCCCHHHHHHHHHHHHHhhcccccCCCCeEEEEcCchhh
Confidence 469999999996655543 3344431 1111 3589999999995
No 497
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.31 E-value=0.66 Score=50.42 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE
Q 006311 428 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 481 (651)
Q Consensus 428 Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV 481 (651)
....+..++. ...-.+|.||+|+||| |+..+++..+- +..||++
T Consensus 149 ~~~~L~~~v~--~~~nili~G~tgSGKT------Tll~aL~~~ip--~~~ri~t 192 (332)
T PRK13900 149 IKEFLEHAVI--SKKNIIISGGTSTGKT------TFTNAALREIP--AIERLIT 192 (332)
T ss_pred HHHHHHHHHH--cCCcEEEECCCCCCHH------HHHHHHHhhCC--CCCeEEE
Confidence 3444444444 3567999999999999 55555555443 3566655
No 498
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=88.31 E-value=1.9 Score=48.39 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH-Hh------CCCCeEEEEccChhhHHHHHH---
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RR------SPKSRILICAPWNRTCDKLME--- 494 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll-~~------~~~~rILVcApSNsAaD~l~~--- 494 (651)
+--|..||-.+|.+ .-++...-.|+||| .+-+--++|.+ .. ..+..-+|.+||..-|.++-.
T Consensus 43 TlIQs~aIplaLEg---KDvvarArTGSGKT-----~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~vie 114 (569)
T KOG0346|consen 43 TLIQSSAIPLALEG---KDVVARARTGSGKT-----AAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIE 114 (569)
T ss_pred chhhhcccchhhcC---cceeeeeccCCCch-----HHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHH
Confidence 44588888887762 35677889999999 44332233332 21 123456888899876655443
Q ss_pred HHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCC--CCCCccEEEE
Q 006311 495 CLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGI--TAGHFSHIFL 572 (651)
Q Consensus 495 rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~--~~~~F~~IiI 572 (651)
+|....+ +.+|+-.-+ .++.+.+.+ .-.+..-.|||+|.+-.-.....|. ...+...++|
T Consensus 115 kL~~~c~--k~lr~~nl~---s~~sdsv~~-------------~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 115 KLVEYCS--KDLRAINLA---SSMSDSVNS-------------VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred HHHHHHH--Hhhhhhhhh---cccchHHHH-------------HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 3332211 122221100 011222221 1233567899999886655444443 3456889999
Q ss_pred ecCC
Q 006311 573 IDAS 576 (651)
Q Consensus 573 DEAs 576 (651)
|||-
T Consensus 177 DEAD 180 (569)
T KOG0346|consen 177 DEAD 180 (569)
T ss_pred chhh
Confidence 9994
No 499
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.25 E-value=0.52 Score=53.03 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=28.9
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEE-EEccChhh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL-ICAPWNRT 488 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rIL-VcApSNsA 488 (651)
..+++.||||+||| +|++.++..+... .+.+|+ |++.+..+
T Consensus 100 ~vi~~vG~~GsGKT-----TtaakLA~~l~~~-~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 100 TVILMVGLQGSGKT-----TTCGKLAYYLKKK-QGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEEECCCCCcHH-----HHHHHHHHHHHHh-CCCeEEEEeccccch
Confidence 35789999999999 8888888775533 255654 55555543
No 500
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.23 E-value=0.52 Score=52.30 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=31.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEE-EEccChh--hHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL-ICAPWNR--TCDKLM 493 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rIL-VcApSNs--AaD~l~ 493 (651)
...++|.||.|+||| +|++.+..++.+. +.+|. |++.+-. |++.+.
T Consensus 206 ~~ii~lvGptGvGKT-----Tt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk 254 (407)
T PRK12726 206 HRIISLIGQTGVGKT-----TTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQ 254 (407)
T ss_pred CeEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHH
Confidence 457889999999999 8888887766554 56664 5555543 344443
Done!