Query 006311
Match_columns 651
No_of_seqs 358 out of 2104
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 21:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 1.4E-48 4.9E-53 446.9 28.8 362 247-637 3-443 (646)
2 2gk6_A Regulator of nonsense t 100.0 2.8E-42 9.7E-47 393.7 37.0 359 244-637 5-415 (624)
3 2wjy_A Regulator of nonsense t 100.0 3.6E-41 1.2E-45 394.1 37.2 375 228-637 165-591 (800)
4 2xzl_A ATP-dependent helicase 100.0 2.9E-41 1E-45 395.1 33.7 367 235-637 174-593 (802)
5 1w36_D RECD, exodeoxyribonucle 99.7 1.7E-16 5.8E-21 180.8 14.4 173 425-630 151-331 (608)
6 3e1s_A Exodeoxyribonuclease V, 99.7 3E-16 1E-20 177.8 15.6 138 421-612 187-324 (574)
7 3upu_A ATP-dependent DNA helic 99.6 1E-15 3.5E-20 168.3 14.5 149 422-613 24-174 (459)
8 3lfu_A DNA helicase II; SF1 he 99.5 1.3E-13 4.5E-18 156.3 11.7 69 422-500 8-78 (647)
9 1uaa_A REP helicase, protein ( 99.2 1.2E-11 4E-16 141.9 6.2 69 423-501 2-72 (673)
10 3vkw_A Replicase large subunit 99.2 2.1E-11 7.2E-16 133.8 7.7 118 441-613 161-279 (446)
11 1pjr_A PCRA; DNA repair, DNA r 99.1 3.2E-11 1.1E-15 139.9 7.0 68 422-499 10-79 (724)
12 3b6e_A Interferon-induced heli 99.0 4.8E-10 1.6E-14 108.3 6.2 134 422-581 32-177 (216)
13 1qde_A EIF4A, translation init 98.9 2.7E-09 9.2E-14 104.4 10.9 155 422-602 35-194 (224)
14 2gxq_A Heat resistant RNA depe 98.9 2.2E-09 7.7E-14 103.4 9.8 130 422-578 22-156 (207)
15 2pl3_A Probable ATP-dependent 98.9 2.4E-09 8.2E-14 106.0 10.0 155 422-602 46-210 (236)
16 1rif_A DAR protein, DNA helica 98.9 5.5E-09 1.9E-13 106.7 10.9 129 422-583 112-242 (282)
17 1hv8_A Putative ATP-dependent 98.9 4.2E-09 1.4E-13 109.1 9.3 155 422-601 27-185 (367)
18 1vec_A ATP-dependent RNA helic 98.8 2.4E-08 8.3E-13 96.2 13.6 157 422-602 24-185 (206)
19 1t6n_A Probable ATP-dependent 98.8 7.7E-09 2.6E-13 101.0 10.0 156 422-602 35-198 (220)
20 3iuy_A Probable ATP-dependent 98.8 1.1E-08 3.7E-13 100.7 10.4 155 422-603 41-207 (228)
21 2fz4_A DNA repair protein RAD2 98.8 3E-08 1E-12 99.6 12.4 137 422-604 92-229 (237)
22 3dkp_A Probable ATP-dependent 98.8 2.2E-08 7.4E-13 99.6 10.6 135 422-580 50-189 (245)
23 3bor_A Human initiation factor 98.8 1.7E-08 5.8E-13 100.5 9.4 154 422-601 51-211 (237)
24 2oxc_A Probable ATP-dependent 98.7 1.8E-08 6.1E-13 99.7 8.4 132 422-578 45-178 (230)
25 2oca_A DAR protein, ATP-depend 98.7 4.9E-08 1.7E-12 107.4 12.8 149 422-603 112-262 (510)
26 1wp9_A ATP-dependent RNA helic 98.7 5.6E-08 1.9E-12 103.3 11.8 153 422-604 8-167 (494)
27 1s2m_A Putative ATP-dependent 98.7 1E-07 3.5E-12 100.6 13.0 156 422-602 42-202 (400)
28 3pey_A ATP-dependent RNA helic 98.7 1.1E-07 3.8E-12 99.4 13.1 155 422-603 26-186 (395)
29 3fht_A ATP-dependent RNA helic 98.7 1.4E-07 4.7E-12 99.6 13.6 157 422-603 46-209 (412)
30 3h1t_A Type I site-specific re 98.7 4.5E-08 1.5E-12 110.1 10.0 151 422-605 177-343 (590)
31 1q0u_A Bstdead; DEAD protein, 98.6 3.5E-08 1.2E-12 96.6 7.3 158 422-603 25-190 (219)
32 1wrb_A DJVLGB; RNA helicase, D 98.6 1.6E-07 5.5E-12 93.9 12.3 133 422-579 44-187 (253)
33 3eiq_A Eukaryotic initiation f 98.6 1.1E-07 3.9E-12 100.4 11.8 158 422-603 61-223 (414)
34 3ber_A Probable ATP-dependent 98.6 7.8E-08 2.7E-12 96.8 10.0 134 422-580 64-200 (249)
35 2z0m_A 337AA long hypothetical 98.6 5.6E-08 1.9E-12 99.5 9.1 127 422-579 15-142 (337)
36 1fuu_A Yeast initiation factor 98.6 6.8E-08 2.3E-12 101.3 9.9 156 422-603 42-202 (394)
37 3fe2_A Probable ATP-dependent 98.6 1.5E-07 5.1E-12 93.8 11.9 157 422-603 50-216 (242)
38 3ly5_A ATP-dependent RNA helic 98.6 8.6E-08 2.9E-12 97.3 10.0 133 422-579 75-214 (262)
39 4a2p_A RIG-I, retinoic acid in 98.6 1.3E-07 4.3E-12 104.0 12.1 134 422-582 6-146 (556)
40 1xti_A Probable ATP-dependent 98.6 1.3E-07 4.5E-12 99.2 11.5 134 422-580 29-166 (391)
41 3tbk_A RIG-I helicase domain; 98.6 1.1E-07 3.8E-12 104.1 10.9 134 422-582 3-143 (555)
42 2j0s_A ATP-dependent RNA helic 98.6 1.9E-07 6.4E-12 99.1 12.3 157 422-603 58-219 (410)
43 3fmo_B ATP-dependent RNA helic 98.6 3E-07 1E-11 95.4 12.4 156 422-602 113-275 (300)
44 3oiy_A Reverse gyrase helicase 98.5 1.4E-07 4.8E-12 100.8 9.4 126 423-576 21-149 (414)
45 2fwr_A DNA repair protein RAD2 98.5 2.6E-07 9E-12 100.6 11.0 139 421-604 91-229 (472)
46 3fho_A ATP-dependent RNA helic 98.5 1.3E-07 4.3E-12 105.0 8.6 154 423-603 141-300 (508)
47 3fmp_B ATP-dependent RNA helic 98.5 5.2E-07 1.8E-11 98.5 12.5 157 422-603 113-276 (479)
48 2ykg_A Probable ATP-dependent 98.5 6.5E-07 2.2E-11 102.1 13.5 137 421-582 11-152 (696)
49 2i4i_A ATP-dependent RNA helic 98.5 6.4E-07 2.2E-11 94.9 11.7 133 422-579 36-188 (417)
50 3llm_A ATP-dependent RNA helic 98.4 5.8E-07 2E-11 89.4 10.0 131 423-584 61-195 (235)
51 1z63_A Helicase of the SNF2/RA 98.4 6.3E-07 2.1E-11 98.3 10.8 153 421-606 35-190 (500)
52 4gl2_A Interferon-induced heli 98.4 1.8E-07 6E-12 106.9 6.5 132 422-579 6-149 (699)
53 4a2q_A RIG-I, retinoic acid in 98.4 6.3E-07 2.2E-11 104.7 11.3 134 422-582 247-387 (797)
54 2va8_A SSO2462, SKI2-type heli 98.4 5.1E-07 1.7E-11 103.9 9.5 129 422-579 29-158 (715)
55 2db3_A ATP-dependent RNA helic 98.3 7.7E-07 2.6E-11 96.6 9.1 134 422-580 77-217 (434)
56 2p6r_A Afuhel308 helicase; pro 98.3 8.4E-07 2.9E-11 102.1 8.5 126 422-578 24-150 (702)
57 4a4z_A Antiviral helicase SKI2 98.3 2.7E-06 9.3E-11 102.1 12.5 123 422-580 38-161 (997)
58 3l9o_A ATP-dependent RNA helic 98.3 2.1E-06 7E-11 104.2 11.6 123 422-582 183-306 (1108)
59 4a2w_A RIG-I, retinoic acid in 98.3 1.2E-06 4.2E-11 104.4 9.2 134 422-582 247-387 (936)
60 3i5x_A ATP-dependent RNA helic 98.3 1.4E-06 4.8E-11 96.9 9.0 135 422-579 93-239 (563)
61 1gm5_A RECG; helicase, replica 98.3 2.9E-06 9.8E-11 99.4 11.8 130 423-578 368-502 (780)
62 3sqw_A ATP-dependent RNA helic 98.2 1.6E-06 5.5E-11 97.4 9.0 135 422-579 42-188 (579)
63 2zj8_A DNA helicase, putative 98.2 2.2E-06 7.4E-11 99.0 9.8 127 422-578 22-150 (720)
64 3dmq_A RNA polymerase-associat 98.2 3.8E-06 1.3E-10 100.6 10.6 160 422-608 152-321 (968)
65 2eyq_A TRCF, transcription-rep 98.2 7.2E-06 2.5E-10 99.8 13.0 132 422-579 602-738 (1151)
66 4ddu_A Reverse gyrase; topoiso 98.2 6.4E-06 2.2E-10 99.9 12.1 127 423-576 78-206 (1104)
67 2xgj_A ATP-dependent RNA helic 98.1 4.3E-06 1.5E-10 100.5 10.2 121 422-580 85-206 (1010)
68 1z3i_X Similar to RAD54-like; 98.1 6.3E-06 2.1E-10 94.3 11.2 167 422-607 54-234 (644)
69 3mwy_W Chromo domain-containin 98.1 1.4E-05 4.9E-10 93.6 13.0 173 421-608 234-410 (800)
70 3u4q_A ATP-dependent helicase/ 98.0 4.8E-06 1.6E-10 102.0 6.8 68 421-498 8-79 (1232)
71 2l8b_A Protein TRAI, DNA helic 97.9 1.8E-05 6E-10 77.2 8.3 128 425-608 36-163 (189)
72 1gku_B Reverse gyrase, TOP-RG; 97.9 2.3E-05 7.8E-10 94.7 10.6 128 424-579 58-188 (1054)
73 4f92_B U5 small nuclear ribonu 97.9 2.1E-05 7E-10 99.2 10.1 133 422-580 925-1060(1724)
74 2xau_A PRE-mRNA-splicing facto 97.9 2.1E-05 7E-10 92.1 9.5 148 425-601 95-247 (773)
75 3o8b_A HCV NS3 protease/helica 97.9 3.2E-05 1.1E-09 88.9 10.8 105 441-585 232-336 (666)
76 3crv_A XPD/RAD3 related DNA he 97.9 1.7E-05 5.8E-10 89.0 8.3 66 423-498 3-69 (551)
77 2w00_A HSDR, R.ECOR124I; ATP-b 97.9 2.5E-05 8.6E-10 94.0 10.0 152 423-604 271-439 (1038)
78 2vl7_A XPD; helicase, unknown 97.7 3.2E-05 1.1E-09 86.7 7.3 66 423-498 7-73 (540)
79 2v1x_A ATP-dependent DNA helic 97.7 9.6E-05 3.3E-09 83.9 10.3 130 422-579 43-178 (591)
80 2jlq_A Serine protease subunit 97.6 0.00024 8.3E-09 77.6 11.4 58 431-497 11-69 (451)
81 2b8t_A Thymidine kinase; deoxy 97.6 2.2E-05 7.7E-10 78.7 2.8 39 441-486 12-50 (223)
82 4f92_B U5 small nuclear ribonu 97.5 0.00025 8.5E-09 89.5 11.5 128 422-576 78-217 (1724)
83 1l8q_A Chromosomal replication 97.5 0.00039 1.3E-08 72.0 11.0 52 425-483 19-72 (324)
84 2zpa_A Uncharacterized protein 97.5 0.0002 6.8E-09 82.3 9.4 64 422-496 174-237 (671)
85 1oyw_A RECQ helicase, ATP-depe 97.4 7E-05 2.4E-09 83.6 4.7 128 422-579 24-152 (523)
86 2orw_A Thymidine kinase; TMTK, 97.4 6.2E-05 2.1E-09 72.7 3.2 37 442-485 4-40 (184)
87 2chg_A Replication factor C sm 97.4 0.00088 3E-08 63.3 11.3 41 425-471 22-62 (226)
88 2z83_A Helicase/nucleoside tri 97.3 0.00042 1.4E-08 75.9 9.3 50 441-497 21-71 (459)
89 3u61_B DNA polymerase accessor 97.3 0.0011 3.9E-08 68.2 11.7 42 422-469 28-70 (324)
90 2v6i_A RNA helicase; membrane, 97.3 0.0011 3.7E-08 72.1 12.0 49 442-497 3-52 (431)
91 3te6_A Regulatory protein SIR3 97.3 0.00059 2E-08 71.8 8.7 43 566-608 132-177 (318)
92 1xx6_A Thymidine kinase; NESG, 97.2 0.00041 1.4E-08 67.8 5.8 37 442-485 9-45 (191)
93 2whx_A Serine protease/ntpase/ 97.1 0.0012 4.2E-08 75.3 10.5 50 441-497 186-236 (618)
94 2j9r_A Thymidine kinase; TK1, 97.1 0.00079 2.7E-08 67.1 7.8 38 442-486 29-66 (214)
95 1yks_A Genome polyprotein [con 97.1 0.001 3.5E-08 72.5 8.5 51 441-497 8-58 (440)
96 2wv9_A Flavivirin protease NS2 97.0 0.0005 1.7E-08 79.3 6.2 62 430-497 227-291 (673)
97 2v1u_A Cell division control p 97.0 0.00079 2.7E-08 70.0 7.0 42 425-472 24-69 (387)
98 1ojl_A Transcriptional regulat 97.0 0.0026 9E-08 65.9 10.9 26 440-471 24-49 (304)
99 1w4r_A Thymidine kinase; type 97.0 0.00077 2.6E-08 66.3 6.4 37 442-485 21-57 (195)
100 1fnn_A CDC6P, cell division co 96.9 0.0024 8.1E-08 66.7 9.3 68 425-498 22-96 (389)
101 3bos_A Putative DNA replicatio 96.9 0.002 6.9E-08 62.2 8.1 54 423-483 34-87 (242)
102 1sxj_E Activator 1 40 kDa subu 96.9 0.0015 5.2E-08 67.8 7.6 39 425-469 19-58 (354)
103 2gno_A DNA polymerase III, gam 96.9 0.0018 6E-08 67.6 7.9 49 565-613 81-132 (305)
104 1w36_B RECB, exodeoxyribonucle 96.8 0.00081 2.8E-08 82.1 5.8 54 441-499 16-79 (1180)
105 1a5t_A Delta prime, HOLB; zinc 96.8 0.0042 1.4E-07 64.9 10.6 48 565-613 107-158 (334)
106 3ec2_A DNA replication protein 96.8 0.00067 2.3E-08 64.0 3.6 52 425-482 16-73 (180)
107 2o0j_A Terminase, DNA packagin 96.5 0.02 6.7E-07 61.8 13.3 149 422-604 162-314 (385)
108 3cpe_A Terminase, DNA packagin 96.5 0.012 4.1E-07 66.5 12.2 69 422-498 162-230 (592)
109 1jbk_A CLPB protein; beta barr 96.5 0.0019 6.4E-08 59.6 4.6 42 425-472 27-68 (195)
110 1sxj_A Activator 1 95 kDa subu 96.5 0.0065 2.2E-07 67.5 9.3 43 423-471 42-101 (516)
111 2w58_A DNAI, primosome compone 96.5 0.0023 7.8E-08 61.2 4.9 51 425-482 31-88 (202)
112 3rc3_A ATP-dependent RNA helic 96.4 0.0037 1.3E-07 72.1 7.4 47 441-498 155-201 (677)
113 3n70_A Transport activator; si 96.4 0.0021 7.1E-08 58.9 4.1 25 440-470 23-47 (145)
114 1g5t_A COB(I)alamin adenosyltr 96.3 0.0098 3.4E-07 58.4 8.5 40 440-486 27-66 (196)
115 2p65_A Hypothetical protein PF 96.3 0.0026 8.7E-08 58.8 4.0 42 425-472 27-68 (187)
116 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0043 1.5E-07 61.3 5.9 45 421-471 7-63 (262)
117 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0089 3E-07 59.7 7.9 38 442-486 29-66 (219)
118 3h4m_A Proteasome-activating n 96.2 0.0028 9.6E-08 63.8 4.3 46 419-470 16-74 (285)
119 3kl4_A SRP54, signal recogniti 96.2 0.012 4.1E-07 64.4 9.2 39 442-487 98-137 (433)
120 4a15_A XPD helicase, ATP-depen 96.1 0.0056 1.9E-07 69.8 6.6 69 424-498 4-73 (620)
121 1ofh_A ATP-dependent HSL prote 96.1 0.0041 1.4E-07 62.9 4.8 25 441-471 50-74 (310)
122 3syl_A Protein CBBX; photosynt 96.1 0.0041 1.4E-07 63.2 4.5 27 441-473 67-93 (309)
123 2orv_A Thymidine kinase; TP4A 96.0 0.013 4.3E-07 59.2 7.6 37 442-485 20-56 (234)
124 3eie_A Vacuolar protein sortin 95.9 0.0054 1.9E-07 63.6 4.9 48 418-471 16-75 (322)
125 3co5_A Putative two-component 95.9 0.0022 7.4E-08 58.7 1.7 23 440-468 26-48 (143)
126 1iqp_A RFCS; clamp loader, ext 95.9 0.0081 2.8E-07 61.0 5.9 42 425-472 30-71 (327)
127 4b4t_M 26S protease regulatory 95.9 0.0071 2.4E-07 66.2 5.8 60 416-485 177-249 (434)
128 2bjv_A PSP operon transcriptio 95.9 0.0095 3.3E-07 59.5 6.1 27 440-472 28-54 (265)
129 2r62_A Cell division protease 95.8 0.0047 1.6E-07 61.6 3.7 25 441-471 44-68 (268)
130 3cf0_A Transitional endoplasmi 95.8 0.0064 2.2E-07 62.5 4.6 48 418-471 13-73 (301)
131 3b9p_A CG5977-PA, isoform A; A 95.7 0.0073 2.5E-07 61.2 4.7 42 423-470 24-77 (297)
132 1g8p_A Magnesium-chelatase 38 95.7 0.0075 2.6E-07 62.2 4.6 40 426-471 30-69 (350)
133 4b4t_K 26S protease regulatory 95.6 0.0048 1.6E-07 67.5 3.1 59 417-485 169-240 (428)
134 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.0083 2.8E-07 62.6 4.9 48 418-471 10-69 (322)
135 1sxj_D Activator 1 41 kDa subu 95.6 0.0072 2.5E-07 62.3 4.1 42 425-472 42-83 (353)
136 1lv7_A FTSH; alpha/beta domain 95.6 0.008 2.7E-07 59.8 4.3 48 419-472 11-70 (257)
137 1c4o_A DNA nucleotide excision 95.6 0.017 6E-07 66.3 7.5 74 422-505 7-82 (664)
138 4b4t_L 26S protease subunit RP 95.5 0.013 4.3E-07 64.3 6.0 59 417-485 178-249 (437)
139 1njg_A DNA polymerase III subu 95.5 0.01 3.6E-07 56.3 4.8 42 425-472 28-70 (250)
140 4b4t_J 26S protease regulatory 95.5 0.0087 3E-07 65.0 4.6 59 417-485 145-216 (405)
141 2chq_A Replication factor C sm 95.5 0.0095 3.3E-07 60.3 4.6 41 425-471 22-62 (319)
142 3dm5_A SRP54, signal recogniti 95.5 0.019 6.5E-07 63.0 7.1 40 442-488 101-141 (443)
143 3hws_A ATP-dependent CLP prote 95.5 0.0084 2.9E-07 63.1 4.2 25 441-471 51-75 (363)
144 2z4s_A Chromosomal replication 95.5 0.018 6.3E-07 62.7 6.9 53 425-483 113-167 (440)
145 2r44_A Uncharacterized protein 95.4 0.0075 2.6E-07 62.3 3.6 39 426-472 33-71 (331)
146 4b4t_H 26S protease regulatory 95.4 0.013 4.3E-07 64.7 5.5 59 416-484 205-276 (467)
147 1tf5_A Preprotein translocase 95.4 0.057 1.9E-06 63.5 11.2 121 423-577 83-214 (844)
148 2qby_B CDC6 homolog 3, cell di 95.3 0.013 4.4E-07 61.1 5.1 41 425-471 25-69 (384)
149 1tue_A Replication protein E1; 95.3 0.0079 2.7E-07 59.8 3.1 38 429-472 45-83 (212)
150 1hqc_A RUVB; extended AAA-ATPa 95.3 0.023 7.8E-07 58.0 6.6 41 425-471 17-62 (324)
151 1sxj_C Activator 1 40 kDa subu 95.3 0.014 4.7E-07 60.8 5.0 42 425-472 30-71 (340)
152 3pxg_A Negative regulator of g 95.3 0.014 4.8E-07 64.1 5.4 42 425-472 185-226 (468)
153 2kjq_A DNAA-related protein; s 95.3 0.023 7.9E-07 52.7 6.0 41 423-473 22-62 (149)
154 2fsf_A Preprotein translocase 95.2 0.055 1.9E-06 63.6 10.2 122 423-578 74-206 (853)
155 3t15_A Ribulose bisphosphate c 95.2 0.0071 2.4E-07 62.2 2.3 25 441-471 36-60 (293)
156 1sxj_B Activator 1 37 kDa subu 95.1 0.015 5E-07 59.0 4.5 41 425-471 26-66 (323)
157 4fcw_A Chaperone protein CLPB; 95.1 0.01 3.6E-07 60.2 3.4 26 442-473 48-73 (311)
158 3uk6_A RUVB-like 2; hexameric 95.1 0.013 4.4E-07 61.1 4.2 42 425-472 49-95 (368)
159 4b4t_I 26S protease regulatory 95.1 0.015 5.2E-07 63.6 4.8 58 417-484 179-249 (437)
160 3d8b_A Fidgetin-like protein 1 95.0 0.016 5.4E-07 61.2 4.6 42 423-470 87-140 (357)
161 3pfi_A Holliday junction ATP-d 95.0 0.017 5.7E-07 59.7 4.7 41 424-470 33-78 (338)
162 2qp9_X Vacuolar protein sortin 95.0 0.013 4.3E-07 62.0 3.8 41 425-471 56-108 (355)
163 3pvs_A Replication-associated 95.0 0.034 1.2E-06 60.9 7.2 53 430-492 39-91 (447)
164 2qby_A CDC6 homolog 1, cell di 95.0 0.016 5.4E-07 59.9 4.3 42 425-472 25-70 (386)
165 2zan_A Vacuolar protein sortin 95.0 0.018 6.1E-07 62.8 4.9 57 419-484 133-201 (444)
166 3vfd_A Spastin; ATPase, microt 94.9 0.021 7.2E-07 60.7 5.1 57 419-485 114-182 (389)
167 1nkt_A Preprotein translocase 94.9 0.079 2.7E-06 62.6 10.2 121 423-577 111-242 (922)
168 1d2n_A N-ethylmaleimide-sensit 94.8 0.013 4.4E-07 58.9 3.1 25 441-471 64-88 (272)
169 2qgz_A Helicase loader, putati 94.8 0.022 7.7E-07 59.1 5.0 35 441-482 152-187 (308)
170 2c9o_A RUVB-like 1; hexameric 94.7 0.02 6.9E-07 62.5 4.6 43 424-472 41-88 (456)
171 3pxi_A Negative regulator of g 94.6 0.025 8.6E-07 65.6 5.4 41 425-471 185-225 (758)
172 2dr3_A UPF0273 protein PH0284; 94.5 0.035 1.2E-06 54.0 5.2 57 433-497 13-71 (247)
173 1in4_A RUVB, holliday junction 94.3 0.03 1E-06 58.5 4.5 41 425-471 30-75 (334)
174 1um8_A ATP-dependent CLP prote 94.3 0.026 9E-07 59.5 4.0 25 441-471 72-96 (376)
175 3hu3_A Transitional endoplasmi 94.1 0.029 9.9E-07 62.2 4.2 41 423-469 207-260 (489)
176 1jr3_A DNA polymerase III subu 94.1 0.051 1.8E-06 56.3 5.8 42 425-472 21-63 (373)
177 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.013 4.5E-07 65.2 1.2 25 441-471 41-65 (500)
178 2ipc_A Preprotein translocase 94.0 0.14 4.7E-06 60.7 9.6 138 423-601 79-227 (997)
179 1ixz_A ATP-dependent metallopr 93.9 0.045 1.5E-06 54.2 4.6 48 419-472 15-74 (254)
180 1u0j_A DNA replication protein 93.7 0.038 1.3E-06 56.8 3.8 42 422-469 82-126 (267)
181 2x8a_A Nuclear valosin-contain 93.6 0.022 7.4E-07 58.1 1.8 31 444-483 47-77 (274)
182 3io5_A Recombination and repai 93.5 0.057 2E-06 57.0 4.8 61 431-496 13-78 (333)
183 1r6b_X CLPA protein; AAA+, N-t 93.4 0.053 1.8E-06 62.7 4.7 41 425-471 191-231 (758)
184 3bh0_A DNAB-like replicative h 93.1 0.13 4.5E-06 53.3 6.8 59 432-498 58-117 (315)
185 2d7d_A Uvrabc system protein B 93.1 0.18 6.1E-06 57.8 8.5 73 422-504 11-85 (661)
186 2z0h_A DTMP kinase, thymidylat 93.0 0.12 4E-06 48.6 5.7 47 443-496 2-49 (197)
187 2w0m_A SSO2452; RECA, SSPF, un 92.9 0.12 4.2E-06 49.3 5.8 58 431-497 11-71 (235)
188 1qvr_A CLPB protein; coiled co 92.9 0.11 3.8E-06 61.1 6.5 54 425-484 175-234 (854)
189 3hr8_A Protein RECA; alpha and 92.8 0.075 2.6E-06 56.7 4.5 60 430-496 47-109 (356)
190 3k1j_A LON protease, ATP-depen 92.8 0.046 1.6E-06 61.8 3.0 40 426-473 47-86 (604)
191 1w5s_A Origin recognition comp 92.7 0.082 2.8E-06 55.4 4.7 41 426-472 28-77 (412)
192 2zts_A Putative uncharacterize 92.6 0.093 3.2E-06 50.9 4.6 52 440-498 29-80 (251)
193 3u4q_B ATP-dependent helicase/ 92.6 0.087 3E-06 64.1 5.2 53 443-501 3-56 (1166)
194 2r2a_A Uncharacterized protein 92.5 0.038 1.3E-06 54.0 1.7 41 563-603 84-132 (199)
195 2ce7_A Cell division protein F 92.5 0.097 3.3E-06 57.9 5.0 47 419-471 15-73 (476)
196 1iy2_A ATP-dependent metallopr 92.4 0.042 1.4E-06 55.4 1.8 48 419-472 39-98 (278)
197 1cr0_A DNA primase/helicase; R 92.3 0.16 5.4E-06 51.6 6.0 60 432-498 25-85 (296)
198 2zr9_A Protein RECA, recombina 92.2 0.099 3.4E-06 55.3 4.4 53 431-490 48-103 (349)
199 1g41_A Heat shock protein HSLU 92.1 0.088 3E-06 57.8 4.0 26 441-472 50-75 (444)
200 1xp8_A RECA protein, recombina 91.8 0.12 3.9E-06 55.3 4.4 58 431-495 61-121 (366)
201 1u94_A RECA protein, recombina 91.8 0.13 4.3E-06 54.8 4.7 51 431-488 50-103 (356)
202 3kb2_A SPBC2 prophage-derived 91.6 0.072 2.5E-06 48.7 2.3 23 443-471 3-25 (173)
203 2dhr_A FTSH; AAA+ protein, hex 91.6 0.14 4.8E-06 56.9 5.0 48 418-471 29-88 (499)
204 1ly1_A Polynucleotide kinase; 91.5 0.059 2E-06 49.7 1.6 21 443-469 4-24 (181)
205 3lw7_A Adenylate kinase relate 91.2 0.069 2.3E-06 48.5 1.7 19 443-467 3-21 (179)
206 3cf2_A TER ATPase, transitiona 91.2 0.064 2.2E-06 63.0 1.8 20 443-468 240-259 (806)
207 1qhx_A CPT, protein (chloramph 91.1 0.081 2.8E-06 49.0 2.1 24 442-471 4-27 (178)
208 2cvh_A DNA repair and recombin 91.1 0.19 6.4E-06 47.9 4.8 45 431-485 8-54 (220)
209 2r6a_A DNAB helicase, replicat 91.1 0.3 1E-05 53.2 6.9 60 431-497 192-252 (454)
210 3m6a_A ATP-dependent protease 91.1 0.12 4.3E-06 57.7 3.9 26 441-472 108-133 (543)
211 1nks_A Adenylate kinase; therm 91.0 0.081 2.8E-06 49.2 2.1 33 443-482 3-35 (194)
212 3iij_A Coilin-interacting nucl 91.0 0.11 3.7E-06 48.5 2.8 25 441-471 11-35 (180)
213 3trf_A Shikimate kinase, SK; a 90.8 0.1 3.5E-06 48.7 2.5 24 442-471 6-29 (185)
214 2r8r_A Sensor protein; KDPD, P 90.7 0.16 5.3E-06 51.0 3.8 33 443-482 8-40 (228)
215 1kht_A Adenylate kinase; phosp 90.6 0.11 3.9E-06 48.2 2.7 25 442-472 4-28 (192)
216 3umf_A Adenylate kinase; rossm 90.6 0.095 3.3E-06 52.0 2.1 25 441-471 29-53 (217)
217 1p9r_A General secretion pathw 90.6 0.26 8.9E-06 53.5 5.8 54 421-482 148-201 (418)
218 2plr_A DTMP kinase, probable t 90.5 0.25 8.5E-06 46.7 5.0 26 442-473 5-30 (213)
219 2pbr_A DTMP kinase, thymidylat 90.5 0.36 1.2E-05 44.9 6.0 31 443-480 2-32 (195)
220 1kag_A SKI, shikimate kinase I 90.3 0.11 3.8E-06 47.9 2.2 24 442-471 5-28 (173)
221 4eun_A Thermoresistant glucoki 90.3 0.13 4.3E-06 49.3 2.7 25 441-471 29-53 (200)
222 3cf2_A TER ATPase, transitiona 90.3 0.086 2.9E-06 61.9 1.8 47 417-469 474-533 (806)
223 3pxi_A Negative regulator of g 90.3 0.26 8.8E-06 57.1 5.7 25 443-473 523-547 (758)
224 1gvn_B Zeta; postsegregational 90.2 0.18 6.1E-06 51.7 3.9 22 442-469 34-55 (287)
225 1nlf_A Regulatory protein REPA 90.1 0.3 1E-05 49.1 5.5 50 441-497 30-88 (279)
226 1n0w_A DNA repair protein RAD5 90.1 0.32 1.1E-05 47.0 5.5 25 431-455 12-38 (243)
227 1via_A Shikimate kinase; struc 90.0 0.12 4.3E-06 47.9 2.3 23 443-471 6-28 (175)
228 2yvu_A Probable adenylyl-sulfa 90.0 0.17 5.9E-06 47.4 3.3 35 441-482 13-47 (186)
229 3sr0_A Adenylate kinase; phosp 89.8 0.13 4.3E-06 50.5 2.3 22 444-471 3-24 (206)
230 2rhm_A Putative kinase; P-loop 89.8 0.11 3.8E-06 48.5 1.8 41 441-498 5-45 (193)
231 2vli_A Antibiotic resistance p 89.8 0.14 4.8E-06 47.5 2.5 24 442-471 6-29 (183)
232 3vaa_A Shikimate kinase, SK; s 89.7 0.15 5E-06 48.7 2.7 25 441-471 25-49 (199)
233 2iyv_A Shikimate kinase, SK; t 89.7 0.15 5.3E-06 47.5 2.7 24 442-471 3-26 (184)
234 1nn5_A Similar to deoxythymidy 89.7 0.44 1.5E-05 45.2 5.9 32 441-479 9-40 (215)
235 4a1f_A DNAB helicase, replicat 89.5 0.53 1.8E-05 49.7 6.9 59 432-498 36-95 (338)
236 3bgw_A DNAB-like replicative h 89.4 0.42 1.4E-05 52.2 6.3 59 432-498 187-246 (444)
237 1zak_A Adenylate kinase; ATP:A 89.4 0.16 5.3E-06 49.3 2.6 25 441-471 5-29 (222)
238 3t61_A Gluconokinase; PSI-biol 89.4 0.16 5.5E-06 48.3 2.6 25 441-471 18-42 (202)
239 1ypw_A Transitional endoplasmi 89.3 0.11 3.8E-06 61.0 1.6 40 425-470 209-261 (806)
240 2c95_A Adenylate kinase 1; tra 89.3 0.15 5.1E-06 47.8 2.2 25 441-471 9-33 (196)
241 3cm0_A Adenylate kinase; ATP-b 89.2 0.16 5.4E-06 47.4 2.3 23 443-471 6-28 (186)
242 2v3c_C SRP54, signal recogniti 89.1 0.3 1E-05 53.3 4.8 35 442-483 100-134 (432)
243 3dl0_A Adenylate kinase; phosp 89.1 0.14 4.8E-06 49.2 1.9 20 444-469 3-22 (216)
244 2q6t_A DNAB replication FORK h 89.1 0.53 1.8E-05 51.0 6.7 61 431-498 189-250 (444)
245 3fb4_A Adenylate kinase; psych 89.1 0.16 5.4E-06 48.8 2.3 22 444-471 3-24 (216)
246 1tev_A UMP-CMP kinase; ploop, 89.1 0.14 4.9E-06 47.6 1.9 24 442-471 4-27 (196)
247 1zp6_A Hypothetical protein AT 89.0 0.12 4.3E-06 48.3 1.5 23 441-469 9-31 (191)
248 2cdn_A Adenylate kinase; phosp 88.9 0.18 6.1E-06 48.0 2.6 24 442-471 21-44 (201)
249 1aky_A Adenylate kinase; ATP:A 88.9 0.18 6.2E-06 48.7 2.6 25 441-471 4-28 (220)
250 4edh_A DTMP kinase, thymidylat 88.8 0.5 1.7E-05 46.3 5.8 49 442-497 7-56 (213)
251 1knq_A Gluconate kinase; ALFA/ 88.7 0.18 6.1E-06 46.7 2.3 24 442-471 9-32 (175)
252 1r6b_X CLPA protein; AAA+, N-t 88.7 0.22 7.4E-06 57.6 3.5 23 443-471 490-512 (758)
253 3b85_A Phosphate starvation-in 88.6 0.49 1.7E-05 46.2 5.6 38 424-470 8-45 (208)
254 2px0_A Flagellar biosynthesis 88.6 0.27 9.2E-06 50.7 3.8 37 441-483 105-141 (296)
255 2z43_A DNA repair and recombin 88.6 0.43 1.5E-05 49.5 5.4 60 432-496 96-162 (324)
256 3uie_A Adenylyl-sulfate kinase 88.6 0.29 1E-05 46.6 3.8 45 419-473 7-51 (200)
257 2qor_A Guanylate kinase; phosp 88.6 0.19 6.6E-06 48.1 2.5 25 441-471 12-36 (204)
258 2bwj_A Adenylate kinase 5; pho 88.6 0.17 5.8E-06 47.5 2.1 25 441-471 12-36 (199)
259 4eaq_A DTMP kinase, thymidylat 88.6 0.37 1.3E-05 47.6 4.6 33 442-482 27-59 (229)
260 1e6c_A Shikimate kinase; phosp 88.5 0.2 6.9E-06 45.9 2.6 23 443-471 4-26 (173)
261 3a4m_A L-seryl-tRNA(SEC) kinas 88.5 0.26 8.8E-06 49.4 3.5 32 442-480 5-36 (260)
262 3f9v_A Minichromosome maintena 88.5 0.12 4.1E-06 58.6 1.2 21 443-469 329-349 (595)
263 1v5w_A DMC1, meiotic recombina 88.4 0.38 1.3E-05 50.5 4.8 60 432-496 111-177 (343)
264 1qvr_A CLPB protein; coiled co 88.4 0.24 8.1E-06 58.3 3.6 26 442-473 589-614 (854)
265 2jaq_A Deoxyguanosine kinase; 88.4 0.19 6.5E-06 47.2 2.3 24 443-472 2-25 (205)
266 1y63_A LMAJ004144AAA protein; 88.2 0.19 6.4E-06 47.4 2.2 24 441-470 10-33 (184)
267 1qf9_A UMP/CMP kinase, protein 87.9 0.19 6.5E-06 46.6 2.0 24 442-471 7-30 (194)
268 2wwf_A Thymidilate kinase, put 87.9 0.22 7.5E-06 47.3 2.4 27 441-473 10-36 (212)
269 2ze6_A Isopentenyl transferase 87.8 0.2 6.7E-06 50.2 2.2 22 443-470 3-24 (253)
270 2p5t_B PEZT; postsegregational 87.8 0.26 8.7E-06 49.1 2.9 24 442-471 33-56 (253)
271 1ex7_A Guanylate kinase; subst 87.7 0.24 8.3E-06 47.8 2.7 20 442-467 2-21 (186)
272 1ye8_A Protein THEP1, hypothet 87.6 0.22 7.6E-06 47.4 2.3 24 443-472 2-25 (178)
273 1ak2_A Adenylate kinase isoenz 87.6 0.24 8.3E-06 48.5 2.6 24 442-471 17-40 (233)
274 3tlx_A Adenylate kinase 2; str 87.4 0.21 7.3E-06 49.5 2.1 25 441-471 29-53 (243)
275 3p32_A Probable GTPase RV1496/ 87.3 0.49 1.7E-05 49.8 4.9 37 441-484 79-115 (355)
276 1zd8_A GTP:AMP phosphotransfer 87.2 0.21 7E-06 48.6 1.8 23 441-469 7-29 (227)
277 2bbw_A Adenylate kinase 4, AK4 87.2 0.26 9E-06 48.6 2.6 25 441-471 27-51 (246)
278 1xjc_A MOBB protein homolog; s 87.1 0.42 1.4E-05 45.6 3.9 40 442-488 5-44 (169)
279 1e4v_A Adenylate kinase; trans 87.1 0.22 7.6E-06 47.9 2.0 22 444-471 3-24 (214)
280 2xb4_A Adenylate kinase; ATP-b 87.1 0.25 8.4E-06 48.2 2.3 23 443-471 2-24 (223)
281 1zuh_A Shikimate kinase; alpha 87.0 0.26 8.8E-06 45.3 2.3 25 442-472 8-32 (168)
282 3v9p_A DTMP kinase, thymidylat 86.9 0.76 2.6E-05 45.7 5.8 51 441-497 25-79 (227)
283 2pt5_A Shikimate kinase, SK; a 86.9 0.27 9.2E-06 44.9 2.4 23 443-471 2-24 (168)
284 2qen_A Walker-type ATPase; unk 86.8 0.39 1.3E-05 48.7 3.8 29 425-455 17-45 (350)
285 1q57_A DNA primase/helicase; d 86.8 0.46 1.6E-05 52.3 4.5 57 435-498 235-292 (503)
286 3lv8_A DTMP kinase, thymidylat 86.8 0.79 2.7E-05 45.8 5.9 50 441-497 27-78 (236)
287 3tau_A Guanylate kinase, GMP k 86.8 0.26 9E-06 47.5 2.3 24 441-470 8-31 (208)
288 1m7g_A Adenylylsulfate kinase; 86.8 0.39 1.3E-05 46.1 3.6 39 424-472 12-50 (211)
289 2v54_A DTMP kinase, thymidylat 86.8 0.26 9E-06 46.5 2.3 25 441-471 4-28 (204)
290 3be4_A Adenylate kinase; malar 86.8 0.24 8.1E-06 48.0 2.0 24 442-471 6-29 (217)
291 2bdt_A BH3686; alpha-beta prot 86.8 0.24 8.2E-06 46.5 1.9 21 443-469 4-24 (189)
292 2j41_A Guanylate kinase; GMP, 86.7 0.27 9.2E-06 46.4 2.3 25 441-471 6-30 (207)
293 2ehv_A Hypothetical protein PH 86.7 0.62 2.1E-05 45.1 5.0 23 440-468 29-51 (251)
294 1ypw_A Transitional endoplasmi 86.6 0.19 6.6E-06 58.9 1.4 26 441-472 511-536 (806)
295 3c8u_A Fructokinase; YP_612366 86.4 0.37 1.3E-05 46.3 3.1 26 442-473 23-48 (208)
296 2fna_A Conserved hypothetical 86.3 0.39 1.3E-05 48.8 3.3 27 425-455 18-44 (357)
297 1vma_A Cell division protein F 86.2 0.41 1.4E-05 49.8 3.5 34 443-483 106-139 (306)
298 1ukz_A Uridylate kinase; trans 86.2 0.25 8.5E-06 46.8 1.7 22 442-469 16-37 (203)
299 1rz3_A Hypothetical protein rb 86.2 0.66 2.3E-05 44.3 4.8 34 442-482 23-56 (201)
300 1pzn_A RAD51, DNA repair and r 86.1 0.38 1.3E-05 50.7 3.2 35 431-471 119-155 (349)
301 2wsm_A Hydrogenase expression/ 86.1 0.51 1.8E-05 45.0 3.9 31 425-455 14-44 (221)
302 3tr0_A Guanylate kinase, GMP k 86.0 0.33 1.1E-05 45.8 2.5 23 442-470 8-30 (205)
303 1svm_A Large T antigen; AAA+ f 86.0 0.48 1.6E-05 50.7 4.0 36 430-471 157-193 (377)
304 1kgd_A CASK, peripheral plasma 86.0 0.33 1.1E-05 45.6 2.4 25 441-471 5-29 (180)
305 1cke_A CK, MSSA, protein (cyti 85.9 0.31 1.1E-05 46.8 2.3 24 442-471 6-29 (227)
306 1f2t_A RAD50 ABC-ATPase; DNA d 85.9 0.28 9.7E-06 45.2 1.9 26 441-472 23-48 (149)
307 4a74_A DNA repair and recombin 85.8 0.72 2.5E-05 44.0 4.8 35 431-471 13-49 (231)
308 3l0o_A Transcription terminati 85.7 0.72 2.5E-05 50.0 5.2 43 429-476 163-205 (427)
309 2i1q_A DNA repair and recombin 85.6 0.59 2E-05 48.1 4.4 61 431-496 86-163 (322)
310 4ag6_A VIRB4 ATPase, type IV s 85.6 0.62 2.1E-05 49.3 4.6 43 441-490 35-77 (392)
311 3cmu_A Protein RECA, recombina 85.6 0.55 1.9E-05 60.1 4.8 58 432-496 1415-1475(2050)
312 2vhj_A Ntpase P4, P4; non- hyd 85.6 0.28 9.6E-06 51.8 1.9 15 441-455 123-137 (331)
313 2j37_W Signal recognition part 85.6 0.6 2.1E-05 52.0 4.7 43 443-492 103-148 (504)
314 4tmk_A Protein (thymidylate ki 85.5 1.1 3.7E-05 44.1 6.0 51 442-498 4-55 (213)
315 3a00_A Guanylate kinase, GMP k 85.5 0.37 1.3E-05 45.5 2.5 25 442-472 2-26 (186)
316 3ice_A Transcription terminati 85.4 0.79 2.7E-05 49.7 5.3 46 427-477 160-205 (422)
317 3kta_A Chromosome segregation 85.3 0.29 9.9E-06 45.5 1.7 26 441-472 26-51 (182)
318 1w36_B RECB, exodeoxyribonucle 84.8 0.4 1.4E-05 58.5 3.0 40 566-606 377-418 (1180)
319 1e9r_A Conjugal transfer prote 84.3 0.75 2.6E-05 49.3 4.6 41 441-488 53-93 (437)
320 3qks_A DNA double-strand break 83.8 0.39 1.3E-05 46.5 1.9 27 441-473 23-49 (203)
321 3jvv_A Twitching mobility prot 83.8 0.6 2E-05 49.6 3.5 44 431-481 114-157 (356)
322 1gtv_A TMK, thymidylate kinase 83.6 0.22 7.5E-06 47.4 0.0 32 443-481 2-33 (214)
323 1j8m_F SRP54, signal recogniti 83.6 0.99 3.4E-05 46.5 5.0 35 443-484 100-134 (297)
324 1lvg_A Guanylate kinase, GMP k 83.5 0.5 1.7E-05 45.2 2.5 25 442-472 5-29 (198)
325 1zu4_A FTSY; GTPase, signal re 83.4 0.65 2.2E-05 48.5 3.6 34 443-483 107-140 (320)
326 2a5y_B CED-4; apoptosis; HET: 83.3 0.94 3.2E-05 50.3 5.0 67 426-498 134-209 (549)
327 1ltq_A Polynucleotide kinase; 83.3 0.41 1.4E-05 48.3 1.9 21 443-469 4-24 (301)
328 3u4q_A ATP-dependent helicase/ 83.2 0.49 1.7E-05 58.0 2.9 40 566-606 400-442 (1232)
329 2hf9_A Probable hydrogenase ni 82.9 0.94 3.2E-05 43.3 4.2 31 425-455 22-52 (226)
330 1rj9_A FTSY, signal recognitio 82.9 0.82 2.8E-05 47.3 4.0 37 441-484 102-138 (304)
331 2eyu_A Twitching motility prot 82.8 0.71 2.4E-05 46.6 3.5 38 440-483 24-61 (261)
332 1jjv_A Dephospho-COA kinase; P 82.6 0.46 1.6E-05 45.2 1.8 21 443-469 4-24 (206)
333 2ewv_A Twitching motility prot 82.4 0.69 2.4E-05 49.2 3.4 36 441-482 136-171 (372)
334 4akg_A Glutathione S-transfera 82.4 1 3.5E-05 59.3 5.5 15 441-455 1267-1281(2695)
335 2if2_A Dephospho-COA kinase; a 82.2 0.46 1.6E-05 45.0 1.7 21 443-469 3-23 (204)
336 4gp7_A Metallophosphoesterase; 82.1 0.62 2.1E-05 43.5 2.5 20 441-466 9-28 (171)
337 2pez_A Bifunctional 3'-phospho 82.1 0.57 2E-05 43.5 2.3 26 442-473 6-31 (179)
338 1np6_A Molybdopterin-guanine d 82.1 0.91 3.1E-05 43.2 3.7 37 441-484 6-42 (174)
339 3cmw_A Protein RECA, recombina 81.4 1 3.5E-05 56.9 4.8 58 431-495 21-81 (1706)
340 1tf7_A KAIC; homohexamer, hexa 81.3 1.4 4.7E-05 48.8 5.4 56 432-495 270-327 (525)
341 3cmw_A Protein RECA, recombina 81.1 1.1 3.6E-05 56.8 4.7 58 431-495 370-430 (1706)
342 3b9q_A Chloroplast SRP recepto 81.1 1 3.4E-05 46.6 3.9 36 442-484 101-136 (302)
343 3cmu_A Protein RECA, recombina 81.0 1.1 3.8E-05 57.4 4.9 58 431-495 1068-1128(2050)
344 3ake_A Cytidylate kinase; CMP 81.0 0.66 2.3E-05 43.7 2.3 23 443-471 4-26 (208)
345 2qm8_A GTPase/ATPase; G protei 80.8 0.99 3.4E-05 47.3 3.8 37 441-484 55-91 (337)
346 3lnc_A Guanylate kinase, GMP k 80.5 0.69 2.4E-05 44.9 2.3 25 441-471 27-52 (231)
347 2v9p_A Replication protein E1; 80.2 1.3 4.5E-05 46.0 4.4 34 440-483 125-158 (305)
348 1uf9_A TT1252 protein; P-loop, 80.2 0.56 1.9E-05 44.0 1.5 23 441-469 8-30 (203)
349 3ney_A 55 kDa erythrocyte memb 80.2 0.74 2.5E-05 44.9 2.4 24 441-470 19-42 (197)
350 3r20_A Cytidylate kinase; stru 80.2 0.75 2.6E-05 46.0 2.5 25 441-471 9-33 (233)
351 3e70_C DPA, signal recognition 80.2 1.1 3.7E-05 47.1 3.8 38 441-485 129-167 (328)
352 3asz_A Uridine kinase; cytidin 79.8 0.71 2.4E-05 43.9 2.1 25 442-472 7-31 (211)
353 3qkt_A DNA double-strand break 79.7 0.68 2.3E-05 48.3 2.0 26 441-472 23-48 (339)
354 1yrb_A ATP(GTP)binding protein 79.6 0.95 3.2E-05 44.4 3.0 35 441-483 14-48 (262)
355 2qt1_A Nicotinamide riboside k 79.5 0.61 2.1E-05 44.4 1.5 22 442-469 22-43 (207)
356 1uj2_A Uridine-cytidine kinase 79.0 0.69 2.4E-05 45.8 1.8 25 442-472 23-47 (252)
357 2oap_1 GSPE-2, type II secreti 79.0 1.2 4E-05 49.6 3.8 47 424-480 245-291 (511)
358 2xxa_A Signal recognition part 78.8 1.1 3.9E-05 48.6 3.6 44 443-492 102-148 (433)
359 3bs4_A Uncharacterized protein 78.5 2.2 7.6E-05 43.3 5.4 59 431-497 9-69 (260)
360 3aez_A Pantothenate kinase; tr 78.0 1.5 5E-05 45.6 3.9 38 441-484 90-128 (312)
361 1z6g_A Guanylate kinase; struc 77.8 1.1 3.6E-05 43.7 2.7 31 441-481 23-53 (218)
362 2og2_A Putative signal recogni 77.7 1.4 4.9E-05 46.7 3.9 35 443-484 159-193 (359)
363 2www_A Methylmalonic aciduria 77.7 1.4 4.8E-05 46.3 3.7 36 442-484 75-110 (349)
364 1znw_A Guanylate kinase, GMP k 77.4 0.79 2.7E-05 43.9 1.6 25 441-471 20-44 (207)
365 3zvl_A Bifunctional polynucleo 77.3 0.71 2.4E-05 49.7 1.4 22 441-468 258-279 (416)
366 2yhs_A FTSY, cell division pro 77.3 1.4 4.9E-05 48.9 3.8 38 442-486 294-332 (503)
367 3crm_A TRNA delta(2)-isopenten 77.2 0.84 2.9E-05 47.9 1.9 21 443-469 7-27 (323)
368 3hjn_A DTMP kinase, thymidylat 77.2 3 0.0001 40.1 5.7 47 444-497 3-50 (197)
369 3nwj_A ATSK2; P loop, shikimat 77.1 1.2 4E-05 44.9 2.8 26 441-472 48-73 (250)
370 1c9k_A COBU, adenosylcobinamid 77.1 1.1 3.7E-05 43.2 2.4 29 590-618 122-150 (180)
371 3lda_A DNA repair protein RAD5 77.1 2.3 7.9E-05 45.8 5.3 25 431-455 166-192 (400)
372 2i3b_A HCR-ntpase, human cance 77.0 1.1 3.7E-05 43.1 2.5 31 443-482 3-33 (189)
373 3ld9_A DTMP kinase, thymidylat 76.8 1.9 6.5E-05 42.7 4.2 51 441-497 21-73 (223)
374 2ga8_A Hypothetical 39.9 kDa p 76.7 1 3.6E-05 47.9 2.4 23 443-471 26-48 (359)
375 1vht_A Dephospho-COA kinase; s 76.6 0.97 3.3E-05 43.3 2.0 22 442-469 5-26 (218)
376 3tmk_A Thymidylate kinase; pho 76.6 2.7 9.1E-05 41.4 5.2 48 441-497 5-53 (216)
377 2p67_A LAO/AO transport system 76.4 2.7 9.2E-05 43.8 5.5 36 441-483 56-91 (341)
378 1s96_A Guanylate kinase, GMP k 76.4 1.2 3.9E-05 43.9 2.5 26 441-472 16-41 (219)
379 1sq5_A Pantothenate kinase; P- 76.0 2.5 8.7E-05 43.3 5.1 34 442-481 81-115 (308)
380 1z6t_A APAF-1, apoptotic prote 75.8 2.9 0.0001 46.2 5.9 31 425-455 129-161 (591)
381 3gmt_A Adenylate kinase; ssgci 75.8 1 3.5E-05 45.1 1.9 23 443-471 10-32 (230)
382 3tqc_A Pantothenate kinase; bi 75.6 2.7 9.4E-05 43.9 5.3 35 443-483 94-129 (321)
383 3qf7_A RAD50; ABC-ATPase, ATPa 75.2 1.1 3.7E-05 47.5 2.0 26 441-472 23-48 (365)
384 1odf_A YGR205W, hypothetical 3 74.5 1.2 4.2E-05 45.7 2.2 26 442-473 32-57 (290)
385 1ny5_A Transcriptional regulat 74.4 3.8 0.00013 43.5 6.1 51 440-497 159-209 (387)
386 2h92_A Cytidylate kinase; ross 74.3 1.3 4.4E-05 42.4 2.2 22 442-469 4-25 (219)
387 1q3t_A Cytidylate kinase; nucl 73.6 1.6 5.4E-05 42.7 2.7 25 441-471 16-40 (236)
388 2jeo_A Uridine-cytidine kinase 73.1 1.5 5E-05 43.2 2.3 24 442-471 26-49 (245)
389 3vkg_A Dynein heavy chain, cyt 73.1 2.6 8.8E-05 56.4 5.1 57 430-497 1295-1352(3245)
390 3auy_A DNA double-strand break 73.0 1.2 4.1E-05 46.9 1.8 25 441-471 25-49 (371)
391 1a7j_A Phosphoribulokinase; tr 72.9 1.9 6.3E-05 44.2 3.1 26 441-472 5-30 (290)
392 4e22_A Cytidylate kinase; P-lo 72.7 1.3 4.4E-05 44.1 1.8 24 442-471 28-51 (252)
393 4hlc_A DTMP kinase, thymidylat 72.7 4.2 0.00014 39.4 5.4 47 443-497 4-51 (205)
394 3jux_A Protein translocase sub 72.6 13 0.00046 43.3 10.3 47 445-498 92-138 (822)
395 1vt4_I APAF-1 related killer D 72.5 4.6 0.00016 49.0 6.7 67 426-498 134-204 (1221)
396 2f6r_A COA synthase, bifunctio 72.0 1.3 4.4E-05 45.0 1.7 21 443-469 77-97 (281)
397 2obl_A ESCN; ATPase, hydrolase 71.8 1.8 6.1E-05 45.7 2.7 38 429-472 59-96 (347)
398 2oze_A ORF delta'; para, walke 71.8 4.3 0.00015 40.7 5.5 56 427-489 21-80 (298)
399 3cio_A ETK, tyrosine-protein k 71.8 3.6 0.00012 42.1 5.0 35 441-482 104-139 (299)
400 2qmh_A HPR kinase/phosphorylas 71.7 1.7 5.9E-05 42.8 2.4 15 441-455 34-48 (205)
401 2grj_A Dephospho-COA kinase; T 71.6 1.6 5.6E-05 41.9 2.2 23 442-470 13-35 (192)
402 1ls1_A Signal recognition part 71.5 2.6 9E-05 43.2 3.8 34 443-483 100-133 (295)
403 3ug7_A Arsenical pump-driving 71.3 3.7 0.00013 42.9 5.1 37 441-484 26-62 (349)
404 3bfv_A CAPA1, CAPB2, membrane 70.8 3.5 0.00012 41.6 4.5 34 442-482 83-117 (271)
405 2ocp_A DGK, deoxyguanosine kin 70.3 1.2 4.3E-05 43.5 1.0 24 442-471 3-26 (241)
406 3foz_A TRNA delta(2)-isopenten 70.1 1.5 5.1E-05 46.0 1.7 23 441-469 10-32 (316)
407 1htw_A HI0065; nucleotide-bind 70.1 1.6 5.6E-05 40.6 1.8 25 441-471 33-57 (158)
408 1e69_A Chromosome segregation 70.0 2 6.8E-05 44.3 2.6 25 441-471 24-48 (322)
409 2dpy_A FLII, flagellum-specifi 69.7 2 6.8E-05 46.8 2.6 49 429-484 145-193 (438)
410 1sky_E F1-ATPase, F1-ATP synth 69.6 4 0.00014 45.1 4.9 37 431-472 141-177 (473)
411 3exa_A TRNA delta(2)-isopenten 69.5 1.6 5.6E-05 45.8 1.8 22 441-468 3-24 (322)
412 3iqw_A Tail-anchored protein t 69.5 2.8 9.7E-05 43.9 3.6 43 435-484 10-52 (334)
413 3d3q_A TRNA delta(2)-isopenten 68.6 1.7 5.8E-05 46.0 1.6 21 443-469 9-29 (340)
414 3k9g_A PF-32 protein; ssgcid, 68.3 9.5 0.00032 37.5 7.1 43 443-493 30-74 (267)
415 1x6v_B Bifunctional 3'-phospho 68.1 2.9 9.9E-05 47.8 3.6 51 417-473 28-78 (630)
416 1tf7_A KAIC; homohexamer, hexa 68.0 3.5 0.00012 45.6 4.1 47 431-484 27-77 (525)
417 2f9l_A RAB11B, member RAS onco 67.9 1.9 6.6E-05 40.3 1.8 20 443-468 7-26 (199)
418 1nij_A Hypothetical protein YJ 67.9 3.1 0.00011 42.9 3.5 22 442-469 5-26 (318)
419 2dyk_A GTP-binding protein; GT 67.7 2.1 7.3E-05 37.8 1.9 12 444-455 4-15 (161)
420 3a8t_A Adenylate isopentenyltr 67.6 1.6 5.5E-05 46.2 1.2 14 442-455 41-54 (339)
421 1nrj_B SR-beta, signal recogni 67.6 2.1 7.1E-05 40.5 1.9 15 441-455 12-26 (218)
422 1tq4_A IIGP1, interferon-induc 67.0 2.5 8.5E-05 45.8 2.6 38 427-472 57-94 (413)
423 3io3_A DEHA2D07832P; chaperone 66.9 3.8 0.00013 43.1 4.0 46 434-484 11-56 (348)
424 3dzd_A Transcriptional regulat 66.7 4.7 0.00016 42.5 4.7 28 440-473 151-178 (368)
425 1kao_A RAP2A; GTP-binding prot 66.3 2.4 8.1E-05 37.5 1.9 12 444-455 6-17 (167)
426 1oix_A RAS-related protein RAB 65.8 2 7E-05 40.1 1.5 20 443-468 31-50 (191)
427 1z2a_A RAS-related protein RAB 65.8 2.4 8.4E-05 37.6 1.9 13 443-455 7-19 (168)
428 2ffh_A Protein (FFH); SRP54, s 65.8 4.2 0.00014 44.2 4.1 34 443-483 100-133 (425)
429 3la6_A Tyrosine-protein kinase 65.6 5.4 0.00018 40.7 4.7 37 566-606 201-237 (286)
430 1lw7_A Transcriptional regulat 65.3 1.8 6E-05 45.5 1.0 25 442-472 171-195 (365)
431 1ek0_A Protein (GTP-binding pr 65.2 2.5 8.7E-05 37.5 1.9 12 444-455 6-17 (170)
432 2ck3_D ATP synthase subunit be 65.1 3.4 0.00012 45.7 3.2 38 430-472 142-179 (482)
433 2axn_A 6-phosphofructo-2-kinas 64.8 2.6 8.8E-05 46.9 2.3 26 441-472 35-60 (520)
434 1wms_A RAB-9, RAB9, RAS-relate 64.6 2.6 9E-05 37.9 1.9 13 443-455 9-21 (177)
435 1p5z_B DCK, deoxycytidine kina 64.6 1.1 3.8E-05 44.5 -0.6 24 441-470 24-47 (263)
436 2woo_A ATPase GET3; tail-ancho 64.5 5 0.00017 41.6 4.3 36 441-483 19-54 (329)
437 2o5v_A DNA replication and rep 64.4 2.6 8.7E-05 44.8 2.0 24 441-470 26-49 (359)
438 2ce2_X GTPase HRAS; signaling 64.4 2.5 8.4E-05 37.2 1.7 12 444-455 6-17 (166)
439 2ged_A SR-beta, signal recogni 64.2 2.7 9.2E-05 38.7 1.9 15 441-455 48-62 (193)
440 2wji_A Ferrous iron transport 64.2 2.6 8.8E-05 38.2 1.8 13 443-455 5-17 (165)
441 1ihu_A Arsenical pump-driving 64.1 4.5 0.00015 45.2 4.1 36 441-483 8-43 (589)
442 2nzj_A GTP-binding protein REM 64.0 2.6 8.9E-05 37.8 1.8 13 443-455 6-18 (175)
443 1ky3_A GTP-binding protein YPT 63.9 2.8 9.4E-05 37.8 1.9 13 443-455 10-22 (182)
444 2gza_A Type IV secretion syste 63.7 2.5 8.6E-05 44.5 1.8 27 440-472 174-200 (361)
445 1u8z_A RAS-related protein RAL 63.6 2.9 9.8E-05 36.9 1.9 13 443-455 6-18 (168)
446 2pt7_A CAG-ALFA; ATPase, prote 63.4 2 6.7E-05 44.9 0.9 35 441-482 171-205 (330)
447 3eph_A TRNA isopentenyltransfe 63.4 2.4 8.3E-05 45.9 1.7 24 442-471 3-26 (409)
448 1g16_A RAS-related protein SEC 63.3 2.6 9E-05 37.5 1.7 12 444-455 6-17 (170)
449 1z0j_A RAB-22, RAS-related pro 63.2 2.9 0.0001 37.2 1.9 13 443-455 8-20 (170)
450 2onk_A Molybdate/tungstate ABC 63.0 2.7 9.1E-05 41.9 1.8 34 442-482 25-58 (240)
451 1z08_A RAS-related protein RAB 62.4 3.1 0.00011 37.0 2.0 13 443-455 8-20 (170)
452 3zq6_A Putative arsenical pump 62.4 4.4 0.00015 41.8 3.4 36 442-484 15-50 (324)
453 3q85_A GTP-binding protein REM 62.4 2.9 0.0001 37.3 1.8 12 444-455 5-16 (169)
454 2pcj_A ABC transporter, lipopr 62.3 2.5 8.4E-05 41.5 1.4 35 441-482 30-64 (224)
455 1r2q_A RAS-related protein RAB 62.2 3.1 0.00011 36.9 1.9 13 443-455 8-20 (170)
456 2erx_A GTP-binding protein DI- 62.2 2.9 0.0001 37.1 1.8 12 444-455 6-17 (172)
457 1w1w_A Structural maintenance 62.0 3 0.0001 44.8 2.0 26 441-472 26-51 (430)
458 1fx0_B ATP synthase beta chain 62.0 3.8 0.00013 45.5 2.9 39 430-473 154-192 (498)
459 1sgw_A Putative ABC transporte 61.8 3 0.0001 40.9 1.8 35 441-482 35-69 (214)
460 1c1y_A RAS-related protein RAP 61.7 3 0.0001 36.9 1.8 12 444-455 6-17 (167)
461 2f1r_A Molybdopterin-guanine d 61.6 1.7 5.9E-05 41.0 0.1 25 443-473 4-28 (171)
462 2cbz_A Multidrug resistance-as 61.2 2.8 9.7E-05 41.5 1.6 26 441-472 31-56 (237)
463 3bc1_A RAS-related protein RAB 61.2 3.3 0.00011 37.6 1.9 13 443-455 13-25 (195)
464 2y8e_A RAB-protein 6, GH09086P 60.9 2.9 9.9E-05 37.5 1.5 13 443-455 16-28 (179)
465 3tw8_B RAS-related protein RAB 60.6 3.1 0.00011 37.4 1.6 13 443-455 11-23 (181)
466 2zej_A Dardarin, leucine-rich 60.6 3.1 0.0001 38.4 1.6 13 443-455 4-16 (184)
467 3clv_A RAB5 protein, putative; 60.6 3.4 0.00012 37.7 1.9 13 443-455 9-21 (208)
468 2woj_A ATPase GET3; tail-ancho 60.4 5.4 0.00019 41.9 3.7 39 441-484 18-56 (354)
469 3tif_A Uncharacterized ABC tra 60.3 3 0.0001 41.2 1.6 36 441-483 31-66 (235)
470 4dsu_A GTPase KRAS, isoform 2B 60.3 3.5 0.00012 37.4 1.9 12 444-455 7-18 (189)
471 3q72_A GTP-binding protein RAD 60.1 2.9 9.9E-05 37.2 1.3 12 444-455 5-16 (166)
472 1g6h_A High-affinity branched- 60.0 3.1 0.0001 41.7 1.6 36 441-483 33-68 (257)
473 2hxs_A RAB-26, RAS-related pro 59.9 3.4 0.00012 37.2 1.8 13 443-455 8-20 (178)
474 2efe_B Small GTP-binding prote 59.6 3.7 0.00013 37.0 2.0 13 443-455 14-26 (181)
475 3sop_A Neuronal-specific septi 59.5 3.6 0.00012 41.7 2.0 41 566-606 113-153 (270)
476 2d2e_A SUFC protein; ABC-ATPas 59.4 3.3 0.00011 41.2 1.8 35 441-482 29-65 (250)
477 1z0f_A RAB14, member RAS oncog 59.4 3.7 0.00013 36.8 1.9 13 443-455 17-29 (179)
478 1svi_A GTP-binding protein YSX 59.2 3.2 0.00011 38.2 1.5 15 441-455 23-37 (195)
479 1r8s_A ADP-ribosylation factor 59.1 3.8 0.00013 36.3 1.9 12 444-455 3-14 (164)
480 1mv5_A LMRA, multidrug resista 59.0 3.3 0.00011 41.1 1.6 35 441-482 28-62 (243)
481 1b0u_A Histidine permease; ABC 58.9 3.3 0.00011 41.7 1.6 35 441-482 32-66 (262)
482 1upt_A ARL1, ADP-ribosylation 58.9 3.9 0.00013 36.5 1.9 13 443-455 9-21 (171)
483 2oil_A CATX-8, RAS-related pro 58.8 3.8 0.00013 37.7 2.0 13 443-455 27-39 (193)
484 2wjg_A FEOB, ferrous iron tran 58.7 3.6 0.00012 37.5 1.8 13 443-455 9-21 (188)
485 2pze_A Cystic fibrosis transme 58.6 3.4 0.00012 40.6 1.6 26 441-472 34-59 (229)
486 2lkc_A Translation initiation 58.5 4.4 0.00015 36.4 2.3 15 441-455 8-22 (178)
487 2fn4_A P23, RAS-related protei 58.4 3.6 0.00012 37.0 1.7 13 443-455 11-23 (181)
488 1ji0_A ABC transporter; ATP bi 58.2 3.5 0.00012 40.9 1.6 35 441-482 32-66 (240)
489 3tqf_A HPR(Ser) kinase; transf 57.8 5 0.00017 38.8 2.6 14 442-455 17-30 (181)
490 2bov_A RAla, RAS-related prote 57.8 4.1 0.00014 37.7 1.9 13 443-455 16-28 (206)
491 3fdi_A Uncharacterized protein 57.7 3.7 0.00012 39.5 1.7 25 441-471 6-30 (201)
492 2eqj_A Metal-response element- 57.7 35 0.0012 27.6 7.0 38 320-359 12-50 (66)
493 2zu0_C Probable ATP-dependent 57.6 3.7 0.00013 41.4 1.8 37 441-483 46-83 (267)
494 1bif_A 6-phosphofructo-2-kinas 57.6 4.2 0.00014 44.2 2.3 24 441-470 39-62 (469)
495 2ff7_A Alpha-hemolysin translo 57.6 3.6 0.00012 41.0 1.6 36 441-483 35-70 (247)
496 2a9k_A RAS-related protein RAL 57.5 4.2 0.00014 36.7 1.9 13 443-455 20-32 (187)
497 3pqc_A Probable GTP-binding pr 57.5 3.6 0.00012 37.6 1.5 14 442-455 24-37 (195)
498 3con_A GTPase NRAS; structural 57.5 4.1 0.00014 37.3 1.9 13 443-455 23-35 (190)
499 2g6b_A RAS-related protein RAB 57.4 4.2 0.00014 36.6 1.9 13 443-455 12-24 (180)
500 2ius_A DNA translocase FTSK; n 57.4 6.8 0.00023 43.6 4.0 41 441-486 167-209 (512)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=1.4e-48 Score=446.88 Aligned_cols=362 Identities=24% Similarity=0.248 Sum_probs=261.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHhcccccceeEeechhhhhhhcccccccc------CCcCCCCcEEEEEEeCCCCCC-
Q 006311 247 LPSTYKDYFAALLYAEDFYEE-KWSGFQLFNVTLELHKAAIYDKSLKNKNLE------ESDETDDKLFVAFEIDSVPER- 318 (651)
Q Consensus 247 t~~nY~~~f~~LL~lEE~~~~-~i~~y~~~~v~l~~~~~~~~~~~l~~~~~g------~~~~~~g~~~~~L~vpglaE~- 318 (651)
+.++|.++|..||.+|+.+.. ..+.. +.....+. ..-.|.+++ ......|+.++.|+.+.....
T Consensus 3 ~~~~~~~~~~~Ll~~E~~~e~~~~~~~-~~~~~~~~-------~~~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 74 (646)
T 4b3f_X 3 AVESFVTKQLDLLELERDAEVEERRSW-QENISLKE-------LQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAA 74 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSSCHHH-------HGGGTSEEEEEEEEEEEECSSSCEEEEEEESCC---C
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHH-------HHhCCceecceEEEEEEecCCCeEEEEEEecCCCCCC
Confidence 468999999999999975433 33221 11111100 001122221 112346788889987654332
Q ss_pred -CC--CCCCCCEEEEEECCC-CceeEEEEEEEEecccEEEEEEcCCc--cCCCCCCccEEEEEEeCcchHHHHHHHHHHh
Q 006311 319 -RP--FLLSRDFVYAQRSGG-KSKKFQGFLYRVVKWTTVLVEFEEDF--HSQHQPNHKYDVSFSFNRVCLKRAHEAVADA 392 (651)
Q Consensus 319 -rP--sl~~GD~V~v~~~~~-~~~~y~G~V~~v~~~~~V~L~~~~~~--~~~~~~~~~~~V~F~~nr~~~rr~h~Al~~~ 392 (651)
-| .+..||.|.++...+ ....++|+|+++.. ++|.|.|+... .........|.+.+..|+++++||++|++.+
T Consensus 75 ~l~~~~~~~Gd~v~~~~~~~~~~~~~~g~v~~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~l 153 (646)
T 4b3f_X 75 ALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQ-KSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIAL 153 (646)
T ss_dssp CCCCCCCCTTCEEEEEETTTTSCCCEEEEEEEEET-TEEEEECC-------CCCSSCCEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCCEEEEEecCCCCCceEEEEEEEEeC-CEEEEEECCccccccccCCCCcEEEEEeccchHHHHHHHHHHHh
Confidence 22 578999999998644 34689999999999 99999997642 2223345679999999999999999999988
Q ss_pred hh------hccccccCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHH
Q 006311 393 SD------SLFRNYLFPDCASRKSIPYPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREA 466 (651)
Q Consensus 393 ~~------~~~~~~LfP~~~~~~~~~~~~~~~~~~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~Tlvea 466 (651)
.. ..+.++||+...+.+.... ....|.+..||++|++||..+|+. .+++||+|||||||| +|++++
T Consensus 154 ~~~~~~~~~~l~~~l~~~~~p~~~~~~-~~~~~~~~~LN~~Q~~AV~~al~~--~~~~lI~GPPGTGKT-----~ti~~~ 225 (646)
T 4b3f_X 154 KKYHSGPASSLIEVLFGRSAPSPASEI-HPLTFFNTCLDTSQKEAVLFALSQ--KELAIIHGPPGTGKT-----TTVVEI 225 (646)
T ss_dssp HTCCSSTTHHHHHHHTTSSCCCCCCCC-CCCCCSSTTCCHHHHHHHHHHHHC--SSEEEEECCTTSCHH-----HHHHHH
T ss_pred hhcccCchHHHHHHHcCCCCCCCcccc-CcccccCCCCCHHHHHHHHHHhcC--CCceEEECCCCCCHH-----HHHHHH
Confidence 63 2345678876553222211 234556789999999999999972 568999999999999 999999
Q ss_pred HHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHHHHhhhcc-----------------
Q 006311 467 VLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVE----------------- 529 (651)
Q Consensus 467 I~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~----------------- 529 (651)
|.++++. +.+||||||||.|||++++||.. .+.+++|++...|..+ .+..++...
T Consensus 226 I~~l~~~--~~~ILv~a~TN~AvD~i~erL~~--~~~~ilRlG~~~r~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~ 297 (646)
T 4b3f_X 226 ILQAVKQ--GLKVLCCAPSNIAVDNLVERLAL--CKQRILRLGHPARLLE----SIQQHSLDAVLARSDSAQIVADIRKD 297 (646)
T ss_dssp HHHHHHT--TCCEEEEESSHHHHHHHHHHHHH--TTCCEEECSCCSSCCH----HHHTTBHHHHHTTTTCSSTHHHHHHH
T ss_pred HHHHHhC--CCeEEEEcCchHHHHHHHHHHHh--cCCceEEecchhhhhh----hhhhhhHHHHHhhchHHHHHHHHHHH
Confidence 9999986 78999999999999999999986 4567899988766322 222111100
Q ss_pred -cccc------------------------------CCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEEEecCCC
Q 006311 530 -RECF------------------------------SCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASS 577 (651)
Q Consensus 530 -~~~f------------------------------~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAsQ 577 (651)
...+ .....+.+..++||++||.+++.... ..+...+||+||||||+|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ 377 (646)
T 4b3f_X 298 IDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQ 377 (646)
T ss_dssp HTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGG
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccc
Confidence 0000 00112457789999999998865322 224667899999999999
Q ss_pred CChHhHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHc----------CCccccc
Q 006311 578 ATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL----------TEAYRSC 637 (651)
Q Consensus 578 atEpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~----------~~~Y~~~ 637 (651)
++||++|+||. .+ .++||||||+||||++.+..|...|++.||||||++ ..+||+|
T Consensus 378 ~~e~~~lipL~-~~---~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~L~~qYRmh 443 (646)
T 4b3f_X 378 ALEASCWIPLL-KA---RKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMH 443 (646)
T ss_dssp SCHHHHTTTGG-GS---SEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEECCEESSSC
T ss_pred cchHHHHhhcc-cc---ceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeeecccccCCc
Confidence 99999999997 34 489999999999999999999999999999999975 3578887
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=2.8e-42 Score=393.72 Aligned_cols=359 Identities=21% Similarity=0.261 Sum_probs=252.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-hcccccceeEeechhhhhhhccccccccCCcCCCCcEEEEEEeCCCCCCCCCC
Q 006311 244 KPLLPSTYKDYFAALLYAEDFYEEKW-SGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKLFVAFEIDSVPERRPFL 322 (651)
Q Consensus 244 ~~Lt~~nY~~~f~~LL~lEE~~~~~i-~~y~~~~v~l~~~~~~~~~~~l~~~~~g~~~~~~g~~~~~L~vpglaE~rPsl 322 (651)
.--+..+|.++|..||.+|+.+...+ ......++.+.+.. ...|+..+.|.+|+ ++.++++
T Consensus 5 ~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~-~~~~~~~ 66 (624)
T 2gk6_A 5 RYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDL-----------------GLNKKRIAYFTLPK-TDSDMRL 66 (624)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECEEEEE-----------------CTTSCEEEEEECC--------C
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccCceEEeee-----------------cCCCceEEEEEecc-cccCCcC
Confidence 44578999999999999998654422 22334556565521 12466778888988 7778899
Q ss_pred CCCCEEEEEECCCC--ceeEEEEEEEEec--ccEEEEEEcCCccCCCCCCccEEEEEEeCcchHHHHHHHHHHhhhh--c
Q 006311 323 LSRDFVYAQRSGGK--SKKFQGFLYRVVK--WTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDS--L 396 (651)
Q Consensus 323 ~~GD~V~v~~~~~~--~~~y~G~V~~v~~--~~~V~L~~~~~~~~~~~~~~~~~V~F~~nr~~~rr~h~Al~~~~~~--~ 396 (651)
..||.|.++..++. ...+.|+|+++.. .++|.|.++............|.|+|.+|+++++||++|++.+... .
T Consensus 67 ~~Gd~v~l~~~~~~~~~~~~~g~v~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~~~~ 146 (624)
T 2gk6_A 67 MQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS 146 (624)
T ss_dssp CTTCEEEEEECSSSSCCCEEEEEEEECSCSSCSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTS
T ss_pred CCCCEEEEEECCCCCCCcEEEEEEEEecCCCCCEEEEEEccCCCCccccccceEEEEEeCCchHHHHHHHHHHHHhcccc
Confidence 99999999976543 3458899999975 2789999975422222234579999999999999999999987531 1
Q ss_pred ----cccccCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 397 ----FRNYLFPDCASRKSIPYPSLCPY---SNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 397 ----~~~~LfP~~~~~~~~~~~~~~~~---~~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
+.+.++................| ....||++|++||..++. .++++|+|||||||| +|+++++.+
T Consensus 147 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ln~~Q~~av~~~l~---~~~~li~GppGTGKT-----~~~~~~i~~ 218 (624)
T 2gk6_A 147 VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ---RPLSLIQGPPGTGKT-----VTSATIVYH 218 (624)
T ss_dssp BCSHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHT---CSEEEEECCTTSCHH-----HHHHHHHHH
T ss_pred chHHHHHHhcCCCCccccccccCcccccccccCCCCHHHHHHHHHHhc---CCCeEEECCCCCCHH-----HHHHHHHHH
Confidence 12223322211100000000112 235799999999999987 578999999999999 999999988
Q ss_pred HHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccC-------CcH---------HHHHhhhccc---
Q 006311 470 IRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADG-------VSD---------EIFQVSLVER--- 530 (651)
Q Consensus 470 ll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~-------v~~---------~l~~y~~~~~--- 530 (651)
+++. ++.+||+|||||.|||++++++.+ .+.+++|+++.+|+... ++. .+..+.....
T Consensus 219 l~~~-~~~~ilv~a~tn~A~~~l~~~l~~--~~~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~ 295 (624)
T 2gk6_A 219 LARQ-GNGPVLVCAPSNIAVDQLTEKIHQ--TGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETG 295 (624)
T ss_dssp HHTS-SSCCEEEEESSHHHHHHHHHHHHT--TTCCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC---
T ss_pred HHHc-CCCeEEEEeCcHHHHHHHHHHHHh--cCCeEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhc
Confidence 8763 578999999999999999999986 24568899887663110 111 1111110000
Q ss_pred -------cccC----CChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhccccCCCeEEE
Q 006311 531 -------ECFS----CPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIV 599 (651)
Q Consensus 531 -------~~f~----~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVL 599 (651)
..|. ....+.+..++||++||.+++... +...+||+||||||+|++||++++|+...+ .++||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~---l~~~~fd~viIDEAsQ~~e~~~li~l~~~~---~~~il 369 (624)
T 2gk6_A 296 ELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPR---LAKMQFRSILIDESTQATEPECMVPVVLGA---KQLIL 369 (624)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGG---GTTCCCSEEEETTGGGSCHHHHHHHHTTTB---SEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchh---hhcCCCCEEEEecccccCcHHHHHHHHhcC---CeEEE
Confidence 0010 012345788999999999887532 345689999999999999999999998433 49999
Q ss_pred EeCCCCCCccccChHHHhCCCCccHHHHHHcC--------Cccccc
Q 006311 600 TGAPHNSPSRVRSDIARKNGLKMSYFERLCLT--------EAYRSC 637 (651)
Q Consensus 600 aGD~~QL~PvV~S~~a~~~GL~~SLfERL~~~--------~~Y~~~ 637 (651)
+|||+||+|++.+..+...|++.|+||||+.. .+||++
T Consensus 370 vGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~ 415 (624)
T 2gk6_A 370 VGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMH 415 (624)
T ss_dssp EECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSC
T ss_pred ecChhccCCeeecHHHHHcCCchhHHHHHHhcCCCcEEehhhhCcC
Confidence 99999999999999999999999999999852 578877
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=3.6e-41 Score=394.11 Aligned_cols=375 Identities=21% Similarity=0.265 Sum_probs=262.9
Q ss_pred hHHHHHHhccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHH-hcccccceeEeechhhhhhhccccccccCCcCCCCcE
Q 006311 228 DIEDLIKKDIVPKVLKKPLLPSTYKDYFAALLYAEDFYEEKW-SGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKL 306 (651)
Q Consensus 228 ~~~~~~~~~~~~~~l~~~Lt~~nY~~~f~~LL~lEE~~~~~i-~~y~~~~v~l~~~~~~~~~~~l~~~~~g~~~~~~g~~ 306 (651)
++.+....+.++++.....+..+|.+.|..|+++|+.+...+ ....+.++.+.+.. ..+|+.
T Consensus 165 ~~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~~~~~~~~~~~~~-----------------~~~~~~ 227 (800)
T 2wjy_A 165 DLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDL-----------------GLNKKR 227 (800)
T ss_dssp C--------CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCEEEE-----------------CTTCCE
T ss_pred hhhhccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEEEe-----------------cCCCee
Confidence 344444445667788888999999999999999998654322 22334555555421 124667
Q ss_pred EEEEEeCCCCCCCCCCCCCCEEEEEECCC--CceeEEEEEEEEec--ccEEEEEEcCCccCCCCCCccEEEEEEeCcchH
Q 006311 307 FVAFEIDSVPERRPFLLSRDFVYAQRSGG--KSKKFQGFLYRVVK--WTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCL 382 (651)
Q Consensus 307 ~~~L~vpglaE~rPsl~~GD~V~v~~~~~--~~~~y~G~V~~v~~--~~~V~L~~~~~~~~~~~~~~~~~V~F~~nr~~~ 382 (651)
...|.+|+ ++.++++..||.|.++..++ ....+.|+|+++.. .++|.++++............|.|+|.+|++++
T Consensus 228 ~~~~~~~~-~~~~~~l~~GD~v~l~~~~~~~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~ 306 (800)
T 2wjy_A 228 IAYFTLPK-TDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSF 306 (800)
T ss_dssp EEEECCCB-CCC--CCCTTCEEEEEECSSSSCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCHHH
T ss_pred EEEEEecc-ccCCCCCCCCCEEEEEECCCCCCCceeEEEEEEEcCCCCCEEEEEEccCCCCccccCCCceEEEeecCChH
Confidence 77888888 78888999999999997654 23468899999875 267899996543322223456999999999999
Q ss_pred HHHHHHHHHhhhh------ccccccCCCCCCCCCCCC--CC-CCCCCCCCCCHHHHHHHHHHHhccCCCceEEeCcCCCC
Q 006311 383 KRAHEAVADASDS------LFRNYLFPDCASRKSIPY--PS-LCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNN 453 (651)
Q Consensus 383 rr~h~Al~~~~~~------~~~~~LfP~~~~~~~~~~--~~-~~~~~~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTG 453 (651)
+||+.|++.+... .+.+.++........... +. ........||++|++||..++. .+.++|+||||||
T Consensus 307 ~r~~~aL~~~~~~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~---~~~~lI~GppGTG 383 (800)
T 2wjy_A 307 DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ---RPLSLIQGPPGTG 383 (800)
T ss_dssp HHHHHHHHHHHHCTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHT---SSEEEEECCTTSC
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhcc---CCeEEEEcCCCCC
Confidence 9999999877531 112223332211000000 00 1111235799999999999987 5789999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhcccccccc-------CCcH------
Q 006311 454 FVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREAD-------GVSD------ 520 (651)
Q Consensus 454 KT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~-------~v~~------ 520 (651)
|| +|+++++.++++. ++.+||+|||||.|||++.+++.+ .+.+++|+++..|... +++.
T Consensus 384 KT-----~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~--~g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~ 455 (800)
T 2wjy_A 384 KT-----VTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQ--TGLKVVRLCAKSREAIDSPVSFLALHNQIRNMD 455 (800)
T ss_dssp HH-----HHHHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHT--TTCCEEECCCGGGGGCCCTTGGGBHHHHHHTCT
T ss_pred HH-----HHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHH--hCcceEeecccchhhhcchhhhhhHHHHHHcCc
Confidence 99 9999999888764 578999999999999999999986 3456889988766411 1111
Q ss_pred ---HHHHhhhcc--ccc--------cC----CChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhH
Q 006311 521 ---EIFQVSLVE--REC--------FS----CPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPET 583 (651)
Q Consensus 521 ---~l~~y~~~~--~~~--------f~----~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~ 583 (651)
.+..+.... ... |. ....+.+..++||++||.+++.. .+...+||+||||||+|++||++
T Consensus 456 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~---~l~~~~fd~viIDEAsQ~~e~~~ 532 (800)
T 2wjy_A 456 SMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDP---RLAKMQFRSILIDESTQATEPEC 532 (800)
T ss_dssp TCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGGCT---TTTTCCCSEEEETTGGGSCHHHH
T ss_pred cHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhCCh---hhhcCCCCEEEEECCCCCCcHHH
Confidence 111111000 000 10 01234578899999999988743 24556899999999999999999
Q ss_pred HHHHhccccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHc--------CCccccc
Q 006311 584 MIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL--------TEAYRSC 637 (651)
Q Consensus 584 LIpL~~la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~--------~~~Y~~~ 637 (651)
++|+... ..++||+|||+||+|++.+..+...|++.|+||||+. ..+||++
T Consensus 533 li~l~~~---~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~ 591 (800)
T 2wjy_A 533 MVPVVLG---AKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMH 591 (800)
T ss_dssp HHHHTTT---BSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSC
T ss_pred HHHHHhc---CCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCCCCceEehhhcCCC
Confidence 9999743 3499999999999999999999999999999999985 2578887
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-41 Score=395.12 Aligned_cols=367 Identities=19% Similarity=0.264 Sum_probs=252.9
Q ss_pred hccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHh-cccccceeEeechhhhhhhccccccccCCcCCCCcEEEEEEeC
Q 006311 235 KDIVPKVLKKPLLPSTYKDYFAALLYAEDFYEEKWS-GFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKLFVAFEID 313 (651)
Q Consensus 235 ~~~~~~~l~~~Lt~~nY~~~f~~LL~lEE~~~~~i~-~y~~~~v~l~~~~~~~~~~~l~~~~~g~~~~~~g~~~~~L~vp 313 (651)
.+.++++.....+..+|.+.|..||.+|+.+...+. ...+.++.+.+.. ..+|+.++.|.+|
T Consensus 174 ~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 236 (802)
T 2xzl_A 174 QEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSL-----------------ALNNRHLASFTLS 236 (802)
T ss_dssp ----CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCCC--CCBCEEEEE-----------------CTTSCEEEEEC--
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhHhhccCceEeeec-----------------cCCCeEEEEEEec
Confidence 345566777888999999999999999986543332 2344555555521 1256788899999
Q ss_pred CCCCCCCCCCCCCEEEEEECCCC--ceeEEEEEEEEec--ccEEEEEEcCCccCCC-CCCccEEEEEEeCcchHHHHHHH
Q 006311 314 SVPERRPFLLSRDFVYAQRSGGK--SKKFQGFLYRVVK--WTTVLVEFEEDFHSQH-QPNHKYDVSFSFNRVCLKRAHEA 388 (651)
Q Consensus 314 glaE~rPsl~~GD~V~v~~~~~~--~~~y~G~V~~v~~--~~~V~L~~~~~~~~~~-~~~~~~~V~F~~nr~~~rr~h~A 388 (651)
++++.++++..||.|.++..++. ...+.|+|+++.. .++|.|+++......+ .....|.|+|.+|+++++||++|
T Consensus 237 ~~~~~~~~~~~GD~v~l~~~~~~~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~A 316 (802)
T 2xzl_A 237 TFESNELKVAIGDEMILWYSGMQHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDA 316 (802)
T ss_dssp -------CCCTTCEEEEEECSSSSSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEEEEECCCCCCceeEEEEEEEECCCCCCEEEEEEeCCCCCCccccCCCeEEEEEecCchHHHHHHH
Confidence 99998999999999999976542 3458899999975 2679999975432211 23445999999999999999999
Q ss_pred HHHhhh--hc----cccccCCCCCCCC----CCCCCCCCCCCCCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCc
Q 006311 389 VADASD--SL----FRNYLFPDCASRK----SIPYPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSK 458 (651)
Q Consensus 389 l~~~~~--~~----~~~~LfP~~~~~~----~~~~~~~~~~~~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~ 458 (651)
++.+.. .. +.+.++....... ..+. .........||++|++||..++. .++++|+||||||||
T Consensus 317 L~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~lp~-~~~~~~~~~Ln~~Q~~Av~~~l~---~~~~lI~GppGTGKT--- 389 (802)
T 2xzl_A 317 LKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPK-EFSIPNFAQLNSSQSNAVSHVLQ---RPLSLIQGPPGTGKT--- 389 (802)
T ss_dssp HHHHHHCTTSBCHHHHHHHHTCCCCCCCCCCCCCS-CCSCTTSCCCCHHHHHHHHHHTT---CSEEEEECSTTSSHH---
T ss_pred HHHHHhccccchhHHHHHhcCCccccccccccCcc-cccccccccCCHHHHHHHHHHhc---CCCEEEECCCCCCHH---
Confidence 998752 11 1222222211100 0111 01111235799999999999987 568999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccc--cCC-----cHHH--------H
Q 006311 459 TGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREA--DGV-----SDEI--------F 523 (651)
Q Consensus 459 ~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~--~~v-----~~~l--------~ 523 (651)
+|+++++.++++. ++.+||+|||||.|||++++|+.+. +.+++|+++..|.. ..+ +..+ .
T Consensus 390 --~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~--g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~ 464 (802)
T 2xzl_A 390 --VTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL--GLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELK 464 (802)
T ss_dssp --HHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT--TCCEEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHH
T ss_pred --HHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh--CccEEeecccchhhhcchhhhhhHHHHHHhhcHHHHH
Confidence 9999999988874 5789999999999999999999872 45788988766531 001 1000 0
Q ss_pred Hhhhcc---c-------cccC----CChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhc
Q 006311 524 QVSLVE---R-------ECFS----CPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGN 589 (651)
Q Consensus 524 ~y~~~~---~-------~~f~----~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~ 589 (651)
.+.... + ..|. ....+.+..++||++||.+++.. .+.. +||+||||||+|++||++++|+..
T Consensus 465 ~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~---~L~~-~fd~viIDEA~q~~e~~~li~l~~ 540 (802)
T 2xzl_A 465 NLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDK---RLDT-KFRTVLIDESTQASEPECLIPIVK 540 (802)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGCT---TCCS-CCSEEEETTGGGSCHHHHHHHHTT
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcChH---HHhc-cCCEEEEECccccchHHHHHHHHh
Confidence 000000 0 0010 01234577899999999988742 2444 899999999999999999999974
Q ss_pred cccCCCeEEEEeCCCCCCccccChHHHhCCCCccHHHHHHcC--------Cccccc
Q 006311 590 LANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT--------EAYRSC 637 (651)
Q Consensus 590 la~~~~rvVLaGD~~QL~PvV~S~~a~~~GL~~SLfERL~~~--------~~Y~~~ 637 (651)
.+ .++||+|||+||+|++.+..|.+.|++.|+||||+.. .+||++
T Consensus 541 ~~---~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~~~~~~L~~qYRm~ 593 (802)
T 2xzl_A 541 GA---KQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMN 593 (802)
T ss_dssp TB---SEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTTCCCEECCEECSSC
T ss_pred CC---CEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcCCCceEeeeecCCC
Confidence 33 4999999999999999999999999999999999852 578887
No 5
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.68 E-value=1.7e-16 Score=180.83 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHHHHHHhhCCC
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKDIPA 502 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~~rL~~~l~~ 502 (651)
+++|+.|+..++. .+.++|+|||||||| +|++.++..+.+. ..+.+|++||||+.||+.+.+.+......
T Consensus 151 ~~~Q~~Ai~~~l~---~~~~vi~G~pGTGKT-----t~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~ 222 (608)
T 1w36_D 151 INWQKVAAAVALT---RRISVISGGPGTGKT-----TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ 222 (608)
T ss_dssp CCHHHHHHHHHHT---BSEEEEECCTTSTHH-----HHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEEeCCCCCHH-----HHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhc
Confidence 7899999999997 678999999999999 8888777766543 24669999999999999999887541100
Q ss_pred cchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHh
Q 006311 503 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPE 582 (651)
Q Consensus 503 ~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE 582 (651)
+.+....+ ..++.. .. .-++++..+..... +........+++++|||||++..++.
T Consensus 223 ---l~l~~~~~--~~~~~~--------~~----------Tih~ll~~~~~~~~-~~~~~~~~l~~d~lIIDEAsml~~~~ 278 (608)
T 1w36_D 223 ---LPLTDEQK--KRIPED--------AS----------TLHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEASMIDLPM 278 (608)
T ss_dssp ---SSCCSCCC--CSCSCC--------CB----------TTTSCC------------CTTSCCSCSEEEECSGGGCBHHH
T ss_pred ---CCCCHHHH--hccchh--------hh----------hhHhhhccCCCchH-HHhccCCCCCCCEEEEechhhCCHHH
Confidence 00100000 000000 00 00111111111100 11111233479999999999887653
Q ss_pred HHHHHhccccCCCeEEEEeCCCCCCccccCh----HH--HhCCCCccHHHHHHc
Q 006311 583 TMIVLGNLANENTRVIVTGAPHNSPSRVRSD----IA--RKNGLKMSYFERLCL 630 (651)
Q Consensus 583 ~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~----~a--~~~GL~~SLfERL~~ 630 (651)
. -.|......++++||+||+.||+|+.... .. .+.|++.+++++|..
T Consensus 279 ~-~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~ 331 (608)
T 1w36_D 279 M-SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 (608)
T ss_dssp H-HHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHH
T ss_pred H-HHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHH
Confidence 2 33332445678999999999999997643 21 247899999998864
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.67 E-value=3e-16 Score=177.80 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=97.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 421 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
...||++|++|+..+++ ...++|.|||||||| +++..++..+.. .+.+|++||||+.||+.+.+++..
T Consensus 187 ~~~L~~~Q~~Av~~~~~---~~~~~I~G~pGTGKT-----t~i~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~~-- 254 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG---HRLVVLTGGPGTGKS-----TTTKAVADLAES--LGLEVGLCAPTGKAARRLGEVTGR-- 254 (574)
T ss_dssp TTTCCHHHHHHHHHHTT---CSEEEEECCTTSCHH-----HHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHTS--
T ss_pred cCCCCHHHHHHHHHHHh---CCEEEEEcCCCCCHH-----HHHHHHHHHHHh--cCCeEEEecCcHHHHHHhHhhhcc--
Confidence 56899999999999987 679999999999999 776665554444 478999999999999999887632
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCCh
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatE 580 (651)
....+-|+... ....|. ...-....+|+||||||+++..
T Consensus 255 ~a~Tih~ll~~-----------------~~~~~~------------------------~~~~~~~~~dvlIIDEasml~~ 293 (574)
T 3e1s_A 255 TASTVHRLLGY-----------------GPQGFR------------------------HNHLEPAPYDLLIVDEVSMMGD 293 (574)
T ss_dssp CEEEHHHHTTE-----------------ETTEES------------------------CSSSSCCSCSEEEECCGGGCCH
T ss_pred cHHHHHHHHcC-----------------Ccchhh------------------------hhhcccccCCEEEEcCccCCCH
Confidence 22222222110 000010 0011234689999999998876
Q ss_pred HhHHHHHhccccCCCeEEEEeCCCCCCccccC
Q 006311 581 PETMIVLGNLANENTRVIVTGAPHNSPSRVRS 612 (651)
Q Consensus 581 pE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S 612 (651)
... -.|......++++||+||+.||+|+...
T Consensus 294 ~~~-~~Ll~~~~~~~~lilvGD~~QL~~v~~g 324 (574)
T 3e1s_A 294 ALM-LSLLAAVPPGARVLLVGDTDQLPPVDAG 324 (574)
T ss_dssp HHH-HHHHTTSCTTCEEEEEECTTSCCCSSSC
T ss_pred HHH-HHHHHhCcCCCEEEEEecccccCCccCC
Confidence 543 3343344567899999999999998653
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.64 E-value=1e-15 Score=168.33 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..||++|++|+..++.. .+.++++|.|||||||| +++..++..+... ...+|+++||||.||+.+.+++..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT-----~ll~~~~~~l~~~-~~~~il~~a~T~~Aa~~l~~~~~~- 96 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGAT-----TLTKFIIEALIST-GETGIILAAPTHAAKKILSKLSGK- 96 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHH-----HHHHHHHHHHHHT-TCCCEEEEESSHHHHHHHHHHHSS-
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHH-----HHHHHHHHHHHhc-CCceEEEecCcHHHHHHHHhhhcc-
Confidence 58999999999998764 23459999999999999 8777777776664 345899999999999999988732
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
....+-++.. ....... ....+.. ...-....+++||||||++..
T Consensus 97 -~~~T~h~~~~-----------------~~~~~~~--------~~~~~~~---------~~~~~~~~~~~iiiDE~~~~~ 141 (459)
T 3upu_A 97 -EASTIHSILK-----------------INPVTYE--------ENVLFEQ---------KEVPDLAKCRVLICDEVSMYD 141 (459)
T ss_dssp -CEEEHHHHHT-----------------EEEEECS--------SCEEEEE---------CSCCCCSSCSEEEESCGGGCC
T ss_pred -chhhHHHHhc-----------------cCccccc--------ccchhcc---------cccccccCCCEEEEECchhCC
Confidence 2222222111 0000000 0000000 001122369999999998765
Q ss_pred hHhHHHHHhccccCCCeEEEEeCCCCCCccccCh
Q 006311 580 EPETMIVLGNLANENTRVIVTGAPHNSPSRVRSD 613 (651)
Q Consensus 580 EpE~LIpL~~la~~~~rvVLaGD~~QL~PvV~S~ 613 (651)
++.+-.|......+.+++++||+.||+|+....
T Consensus 142 -~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~ 174 (459)
T 3upu_A 142 -RKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGE 174 (459)
T ss_dssp -HHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTS
T ss_pred -HHHHHHHHHhccCCCEEEEECCHHHcCCccCCc
Confidence 444444444555678999999999999988753
No 8
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.46 E-value=1.3e-13 Score=156.31 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC--CCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~--~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..||++|++||.. ..+|++|.|||||||| +|+++.|.+++... +..+||++|+||.||+.+.+|+.+.
T Consensus 8 ~~Ln~~Q~~av~~-----~~~~~lV~a~aGsGKT-----~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA-----PRSNLLVLAGAGSGKT-----RVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC-----CSSCEEEEECTTSCHH-----HHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC-----CCCCEEEEECCCCCHH-----HHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4799999999973 2579999999999999 99999999998752 4579999999999999999999874
Q ss_pred C
Q 006311 500 I 500 (651)
Q Consensus 500 l 500 (651)
+
T Consensus 78 ~ 78 (647)
T 3lfu_A 78 M 78 (647)
T ss_dssp H
T ss_pred h
Confidence 3
No 9
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.18 E-value=1.2e-11 Score=141.91 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
.||++|++||.. ..+|.+|.|+|||||| +||++.|.+++.. .+..+||++|+||.||+.+.+|+.+.+
T Consensus 2 ~L~~~Q~~av~~-----~~~~~lV~AgaGSGKT-----~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF-----VTGPCLVLAGAGSGKT-----RVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC-----CSSEEEECCCTTSCHH-----HHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC-----CCCCEEEEeCCCCChH-----HHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 699999999975 2569999999999999 9999999988875 256799999999999999999998754
Q ss_pred C
Q 006311 501 P 501 (651)
Q Consensus 501 ~ 501 (651)
.
T Consensus 72 ~ 72 (673)
T 1uaa_A 72 G 72 (673)
T ss_dssp C
T ss_pred C
Confidence 3
No 10
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.18 E-value=2.1e-11 Score=133.76 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=76.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh-CCCcchhhhccccccccCCc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD-IPASEMFRANAAFREADGVS 519 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~-l~~~~i~Rv~a~~R~~~~v~ 519 (651)
....+|.|+|||||| +.|.+.+ . ..++||+|||+.|++.+.+++.+. .....-.
T Consensus 161 ~~v~~I~G~aGsGKT-----t~I~~~~----~---~~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~------------- 215 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKT-----KEILSRV----N---FEEDLILVPGRQAAEMIRRRANASGIIVATKD------------- 215 (446)
T ss_dssp SEEEEEEECTTSCHH-----HHHHHHC----C---TTTCEEEESCHHHHHHHHHHHTTTSCCCCCTT-------------
T ss_pred ccEEEEEcCCCCCHH-----HHHHHHh----c---cCCeEEEeCCHHHHHHHHHHhhhcCccccccc-------------
Confidence 457799999999999 6665543 2 257899999999999999998531 0000000
Q ss_pred HHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHHHHhccccCCCeEEE
Q 006311 520 DEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIV 599 (651)
Q Consensus 520 ~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVL 599 (651)
-+.|..++-. .........++.||||||+++.. ..+..+..+.. ..++||
T Consensus 216 ---------------------------~V~T~dsfL~-~~~~~~~~~~d~liiDE~sm~~~-~~l~~l~~~~~-~~~vil 265 (446)
T 3vkw_A 216 ---------------------------NVRTVDSFLM-NYGKGARCQFKRLFIDEGLMLHT-GCVNFLVEMSL-CDIAYV 265 (446)
T ss_dssp ---------------------------TEEEHHHHHH-TTTSSCCCCCSEEEEETGGGSCH-HHHHHHHHHTT-CSEEEE
T ss_pred ---------------------------eEEEeHHhhc-CCCCCCCCcCCEEEEeCcccCCH-HHHHHHHHhCC-CCEEEE
Confidence 1222222110 01112233599999999997754 44433332333 379999
Q ss_pred EeCCCCCCccccCh
Q 006311 600 TGAPHNSPSRVRSD 613 (651)
Q Consensus 600 aGD~~QL~PvV~S~ 613 (651)
+||++||||+-+.+
T Consensus 266 vGD~~Qlp~v~~~~ 279 (446)
T 3vkw_A 266 YGDTQQIPYINRVT 279 (446)
T ss_dssp EECTTSCCCCCCST
T ss_pred ecCcccccCcccCC
Confidence 99999999997764
No 11
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.13 E-value=3.2e-11 Score=139.85 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..||++|++||.. ..+|.+|.|+|||||| +||++.|.+++.. .+..+||++|+||.||+.+.+|+.+.
T Consensus 10 ~~Ln~~Q~~av~~-----~~g~~lV~AgAGSGKT-----~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT-----TEGPLLIMAGAGSGKT-----RVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC-----CSSCEEEEECTTSCHH-----HHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC-----CCCCEEEEEcCCCCHH-----HHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4699999999975 2569999999999999 9999999999874 24579999999999999999999873
No 12
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.96 E-value=4.8e-10 Score=108.26 Aligned_cols=134 Identities=9% Similarity=0.022 Sum_probs=82.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC----CCCeEEEEccChhhHHH-HHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----PKSRILICAPWNRTCDK-LMECL 496 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~----~~~rILVcApSNsAaD~-l~~rL 496 (651)
..|++.|++|+..++. ..-++|.||+||||| .+.+..+.+.+... .+.++|+++|+...+++ +.+.+
T Consensus 32 ~~l~~~Q~~~i~~~~~---~~~~li~~~tGsGKT-----~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE---GKNIIICLPTGSGKT-----RVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp CCCCHHHHHHHHHHHT---TCCEEEECSCHHHHH-----HHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTH
T ss_pred CCchHHHHHHHHHHhc---CCCEEEEcCCCCCHH-----HHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHH
Confidence 5789999999999987 356899999999999 77777776665432 36799999999999988 44444
Q ss_pred HhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-------CCCCCccE
Q 006311 497 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-------ITAGHFSH 569 (651)
Q Consensus 497 ~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-------~~~~~F~~ 569 (651)
...... -+++... ..+.............++|+++|........... +....|++
T Consensus 104 ~~~~~~--~~~v~~~----------------~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (216)
T 3b6e_A 104 QPFLKK--WYRVIGL----------------SGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSL 165 (216)
T ss_dssp HHHHTT--TSCEEEC----------------CC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSE
T ss_pred HHHhcc--CceEEEE----------------eCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccE
Confidence 331111 0111100 0000011111123356899999998775544322 33456899
Q ss_pred EEEecCCCCChH
Q 006311 570 IFLIDASSATEP 581 (651)
Q Consensus 570 IiIDEAsQatEp 581 (651)
||||||.++...
T Consensus 166 iIiDEah~~~~~ 177 (216)
T 3b6e_A 166 IIIDECHHTNKE 177 (216)
T ss_dssp EEETTC------
T ss_pred EEEECchhhccC
Confidence 999999887543
No 13
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.95 E-value=2.7e-09 Score=104.44 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH-hCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~-~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++. ..-+++.+|+||||| .+.+-.+++.+. ...+.++|+++||...++++.+++....
T Consensus 35 ~~~~~~Q~~~i~~~~~---~~~~lv~~pTGsGKT-----~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE---GHDVLAQAQSGTGKT-----GTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEEECCTTSSHH-----HHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhc---CCCEEEECCCCCcHH-----HHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 4689999999999987 345899999999999 775544544443 2345699999999999999998887632
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEEEecCCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAsQat 579 (651)
.... +++... .++.-.....+.+.+++|+++|......... ..+....+++||||||-...
T Consensus 107 ~~~~-~~~~~~-----------------~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 107 FHMD-IKVHAC-----------------IGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 168 (224)
T ss_dssp TTSC-CCEEEE-----------------CC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred cccC-ceEEEE-----------------eCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHh
Confidence 2111 111100 0000000011233458999999887654332 23445679999999997543
Q ss_pred hH---hHHHHHhccccCCCeEEEEeC
Q 006311 580 EP---ETMIVLGNLANENTRVIVTGA 602 (651)
Q Consensus 580 Ep---E~LIpL~~la~~~~rvVLaGD 602 (651)
+. ..+.-+......+.++++..-
T Consensus 169 ~~~~~~~l~~i~~~~~~~~~~i~lSA 194 (224)
T 1qde_A 169 SSGFKEQIYQIFTLLPPTTQVVLLSA 194 (224)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEEES
T ss_pred hhhhHHHHHHHHHhCCccCeEEEEEe
Confidence 32 222233323334556666554
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.94 E-value=2.2e-09 Score=103.38 Aligned_cols=130 Identities=11% Similarity=0.023 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh----CCCCeEEEEccChhhHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----SPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~----~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
..+++.|++|+..+++ ..-.++.+|+||||| .+.+..+++.+.. ..+.++|+++||...++.+.+++.
T Consensus 22 ~~~~~~Q~~~i~~~~~---~~~~li~~~TGsGKT-----~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE---GKDLIGQARTGTGKT-----LAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELT 93 (207)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEEECCTTSCHH-----HHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcC---CCCEEEECCCCChHH-----HHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHH
Confidence 4789999999999987 346899999999999 7766666555432 246789999999999999999988
Q ss_pred hhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEEEecCC
Q 006311 498 KDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDAS 576 (651)
Q Consensus 498 ~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAs 576 (651)
+......+..+.... ..... .......++|+++|......... ..+....+++||||||-
T Consensus 94 ~~~~~~~~~~~~~~~----~~~~~---------------~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 94 AVAPHLKVVAVYGGT----GYGKQ---------------KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp HHCTTSCEEEECSSS----CSHHH---------------HHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred HHhhcceEEEEECCC----ChHHH---------------HHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 744331111111100 00000 01122467899999876644332 23445679999999997
Q ss_pred CC
Q 006311 577 SA 578 (651)
Q Consensus 577 Qa 578 (651)
.+
T Consensus 155 ~~ 156 (207)
T 2gxq_A 155 EM 156 (207)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 15
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.93 E-value=2.4e-09 Score=105.97 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-----CCCCeEEEEccChhhHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-----SPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-----~~~~rILVcApSNsAaD~l~~rL 496 (651)
..+++.|++|+..+++ ..-+++.+|+||||| .+....+++.+.. ..+.++|+++||...++.+.+++
T Consensus 46 ~~~~~~Q~~~i~~~~~---~~~~li~a~TGsGKT-----~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ---GKDVLGAAKTGSGKT-----LAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp CBCCHHHHHHHHHHHT---TCCEEEECCTTSCHH-----HHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---CCCEEEEeCCCCcHH-----HHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHH
Confidence 4789999999999987 346899999999999 7655555554432 24678999999999999999888
Q ss_pred HhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc--CCCCCCccEEEEec
Q 006311 497 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ--GITAGHFSHIFLID 574 (651)
Q Consensus 497 ~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~--~~~~~~F~~IiIDE 574 (651)
........ +++.... ++.......+.+.+++|+++|.......... .+....+++|||||
T Consensus 118 ~~~~~~~~-~~~~~~~-----------------g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 118 RKVGKNHD-FSAGLII-----------------GGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp HHHTTTSS-CCEEEEC-----------------CC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred HHHhCCCC-eeEEEEE-----------------CCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 76322110 1111100 0000000122345789999998866544322 24456799999999
Q ss_pred CCCCChH---hHHHHHhccccCCCeEEEEeC
Q 006311 575 ASSATEP---ETMIVLGNLANENTRVIVTGA 602 (651)
Q Consensus 575 AsQatEp---E~LIpL~~la~~~~rvVLaGD 602 (651)
|..+.+. +.+..+......+.++++..-
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 210 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSA 210 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEES
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEe
Confidence 9765432 222223223333455665543
No 16
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.88 E-value=5.5e-09 Score=106.72 Aligned_cols=129 Identities=11% Similarity=-0.002 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|.+|+..++.. .-.+|.+|+|+||| .+.+.++.+.+.. ...++|+++||.+.+++..+++.+...
T Consensus 112 ~~l~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT-----~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN---RRRILNLPTSAGRS-----LIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCCHHHHHHHHHHHHH---SEEEECCCTTSCHH-----HHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred cCccHHHHHHHHHHHhc---CCeEEEcCCCCCcH-----HHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 47899999999999873 34688999999999 7777777666654 355999999999999999999876321
Q ss_pred C--cchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 502 A--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~--~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
. ..+..+..... . ........+|+++|..+...... ....+|++||||||..+.
T Consensus 183 ~~~~~~~~~~~~~~------------------~----~~~~~~~~~I~v~T~~~l~~~~~--~~~~~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 183 FSHAMIKKIGGGAS------------------K----DDKYKNDAPVVVGTWQTVVKQPK--EWFSQFGMMMNDECHLAT 238 (282)
T ss_dssp CCGGGEEECSTTCS------------------S----TTCCCTTCSEEEECHHHHTTSCG--GGGGGEEEEEEETGGGCC
T ss_pred cccceEEEEeCCCc------------------c----hhhhccCCcEEEEchHHHHhhHH--HHHhhCCEEEEECCccCC
Confidence 1 11111111000 0 00223567899999975533211 123468999999999888
Q ss_pred hHhH
Q 006311 580 EPET 583 (651)
Q Consensus 580 EpE~ 583 (651)
.+..
T Consensus 239 ~~~~ 242 (282)
T 1rif_A 239 GKSI 242 (282)
T ss_dssp HHHH
T ss_pred cccH
Confidence 7643
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.86 E-value=4.2e-09 Score=109.08 Aligned_cols=155 Identities=9% Similarity=0.084 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..+++.|++|+..++.. ..-+++.+|+||||| .+....+++.+...++.++|+++|+...++++.+++.+...
T Consensus 27 ~~~~~~Q~~~i~~~~~~--~~~~l~~~~TGsGKT-----~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 99 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLND--EYNIVAQARTGSGKT-----ASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKG 99 (367)
T ss_dssp CSCCHHHHHHHHHHHHT--CSEEEEECCSSSSHH-----HHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCC--CCCEEEECCCCChHH-----HHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhC
Confidence 46899999999999973 357899999999999 77777677666655678999999999999999999876322
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCCCCCccEEEEecCCCCCh
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~~IiIDEAsQatE 580 (651)
.. -+++..... ... .......+..++|+++|.......... .+....+++||||||....+
T Consensus 100 ~~-~~~v~~~~~---~~~--------------~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 100 NK-NLKIAKIYG---GKA--------------IYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp SS-CCCEEEECT---TSC--------------HHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred CC-CceEEEEEC---Ccc--------------hHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh
Confidence 11 111111000 000 000122345789999998876554432 23456789999999976544
Q ss_pred Hh---HHHHHhccccCCCeEEEEe
Q 006311 581 PE---TMIVLGNLANENTRVIVTG 601 (651)
Q Consensus 581 pE---~LIpL~~la~~~~rvVLaG 601 (651)
.. .+.-+........++++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~S 185 (367)
T 1hv8_A 162 MGFIKDVEKILNACNKDKRILLFS 185 (367)
T ss_dssp TTTHHHHHHHHHTSCSSCEEEEEC
T ss_pred hchHHHHHHHHHhCCCCceEEEEe
Confidence 32 2222222333445666543
No 18
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.85 E-value=2.4e-08 Score=96.17 Aligned_cols=157 Identities=12% Similarity=0.032 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++. ..-+++.+|+|+||| .+....+++.+.. ..+.++|+++||...+..+.+++....
T Consensus 24 ~~~~~~Q~~~i~~~~~---~~~~lv~apTGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 95 (206)
T 1vec_A 24 EKPSPIQEESIPIALS---GRDILARAKNGTGKS-----GAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVS 95 (206)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEEECCSSSTTH-----HHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHcc---CCCEEEECCCCCchH-----HHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHH
Confidence 4689999999999987 346899999999999 7665555554332 245689999999999999988887632
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCCCCCccEEEEecCCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~~IiIDEAsQat 579 (651)
....-+++...... ....+.. ......++|+++|.......... .....++++||||||-.+.
T Consensus 96 ~~~~~~~~~~~~g~-~~~~~~~---------------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 159 (206)
T 1vec_A 96 KHMGGAKVMATTGG-TNLRDDI---------------MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL 159 (206)
T ss_dssp TTSSSCCEEEECSS-SCHHHHH---------------HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHT
T ss_pred hhcCCceEEEEeCC-ccHHHHH---------------HhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhH
Confidence 21111111111000 0000000 01124578999999876544432 2344579999999997655
Q ss_pred hHhH---HHHHhccccCCCeEEEEeC
Q 006311 580 EPET---MIVLGNLANENTRVIVTGA 602 (651)
Q Consensus 580 EpE~---LIpL~~la~~~~rvVLaGD 602 (651)
+... +.-+......+.++++..-
T Consensus 160 ~~~~~~~l~~i~~~~~~~~~~l~~SA 185 (206)
T 1vec_A 160 SQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEe
Confidence 4321 2222212233456666554
No 19
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.84 E-value=7.7e-09 Score=101.04 Aligned_cols=156 Identities=13% Similarity=0.053 Sum_probs=96.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC-CCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-KSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~-~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++.. .-.++.+|+|+||| .+....+++.+.... +.++|+++||...++++.+++.+..
T Consensus 35 ~~~~~~Q~~~i~~~~~~---~~~li~~~TGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 35 EHPSEVQHECIPQAILG---MDVLCQAKSGMGKT-----AVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp CCCCHHHHHHHHHHHTT---CCEEEECCTTSCHH-----HHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCCchh-----hhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 35899999999999973 45899999999999 776666666554322 3599999999999999988876532
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhh-cCCCCCCccEEEEecCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASS 577 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAsQ 577 (651)
....-+++.... ...+..- ..+.+ ...+|+++|......+.. ..+....+++||||||-.
T Consensus 107 ~~~~~~~v~~~~---g~~~~~~--------------~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 169 (220)
T 1t6n_A 107 KYMPNVKVAVFF---GGLSIKK--------------DEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 169 (220)
T ss_dssp TTSTTCCEEEES---CCSCHHH--------------HHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH
T ss_pred hhCCCceEEEEe---CCCChHH--------------HHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHH
Confidence 211111111100 0000000 01112 235899999886654432 234456799999999976
Q ss_pred CCh-H---hHHHHHhccccCCCeEEEEeC
Q 006311 578 ATE-P---ETMIVLGNLANENTRVIVTGA 602 (651)
Q Consensus 578 atE-p---E~LIpL~~la~~~~rvVLaGD 602 (651)
..+ . ..+.-+......+.++++..-
T Consensus 170 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 198 (220)
T 1t6n_A 170 MLEQLDMRRDVQEIFRMTPHEKQVMMFSA 198 (220)
T ss_dssp HHSSHHHHHHHHHHHHTSCSSSEEEEEES
T ss_pred HhcccCcHHHHHHHHHhCCCcCeEEEEEe
Confidence 654 1 222223223334556776654
No 20
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.82 E-value=1.1e-08 Score=100.71 Aligned_cols=155 Identities=9% Similarity=-0.056 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-------CCCCeEEEEccChhhHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-------SPKSRILICAPWNRTCDKLME 494 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-------~~~~rILVcApSNsAaD~l~~ 494 (651)
..+++.|++|+..++. ..-+++.+|.||||| .+..-.+++.+.. ..+.++|+.+||...|+++.+
T Consensus 41 ~~~~~~Q~~~i~~~~~---~~~~l~~apTGsGKT-----~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ---GIDLIVVAQTGTGKT-----LSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEA 112 (228)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEEECCTTSCHH-----HHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---CCCEEEECCCCChHH-----HHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHH
Confidence 4789999999999987 346799999999999 6654444444332 256789999999999999999
Q ss_pred HHHhhCC-CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEEE
Q 006311 495 CLMKDIP-ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFL 572 (651)
Q Consensus 495 rL~~~l~-~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiI 572 (651)
++.+... +....-+.. +............+++|+|+|......+.. ..+...++++|||
T Consensus 113 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 113 ECSKYSYKGLKSICIYG-------------------GRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp HHHHHCCTTCCEEEECC-------------------------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred HHHHhcccCceEEEEEC-------------------CCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 8876321 111111100 000000011122457899999886655433 2334557999999
Q ss_pred ecCCCCChHh---HHHHHhccccCCCeEEEEeCC
Q 006311 573 IDASSATEPE---TMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 573 DEAsQatEpE---~LIpL~~la~~~~rvVLaGD~ 603 (651)
|||-...+.. .+.-+......+.++++..-.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 207 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 207 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESC
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEee
Confidence 9996544321 122222223345567766543
No 21
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.79 E-value=3e-08 Score=99.61 Aligned_cols=137 Identities=13% Similarity=0.081 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|++|+..++.. .-.+|.||+|+||| .+...++.+ . +.++|+++|+...+++..+++.+ +
T Consensus 92 ~~l~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT-----~~a~~~~~~---~--~~~~liv~P~~~L~~q~~~~~~~-~- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVD---KRGCIVLPTGSGKT-----HVAMAAINE---L--STPTLIVVPTLALAEQWKERLGI-F- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTT---SEEEEEESSSTTHH-----HHHHHHHHH---S--CSCEEEEESSHHHHHHHHHHHGG-G-
T ss_pred CCcCHHHHHHHHHHHhC---CCEEEEeCCCCCHH-----HHHHHHHHH---c--CCCEEEEeCCHHHHHHHHHHHHh-C-
Confidence 58999999999998873 34899999999999 665444433 2 67899999999999998888865 2
Q ss_pred Ccc-hhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCCh
Q 006311 502 ASE-MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~-i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatE 580 (651)
+.. +..+. +.. -...+|+++|.......... + ...|++||||||.....
T Consensus 157 ~~~~v~~~~--------------------g~~--------~~~~~i~v~T~~~l~~~~~~-~-~~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 157 GEEYVGEFS--------------------GRI--------KELKPLTVSTYDSAYVNAEK-L-GNRFMLLIFDEVHHLPA 206 (237)
T ss_dssp CGGGEEEES--------------------SSC--------BCCCSEEEEEHHHHHHTHHH-H-TTTCSEEEEECSSCCCT
T ss_pred CCCeEEEEe--------------------CCC--------CCcCCEEEEeHHHHHhhHHH-h-cccCCEEEEECCccCCC
Confidence 111 11111 000 02457899998765443221 1 23599999999998876
Q ss_pred HhHHHHHhccccCCCeEEEEeCCC
Q 006311 581 PETMIVLGNLANENTRVIVTGAPH 604 (651)
Q Consensus 581 pE~LIpL~~la~~~~rvVLaGD~~ 604 (651)
...- .+........++.|.|=|.
T Consensus 207 ~~~~-~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 207 ESYV-QIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp TTHH-HHHHTCCCSEEEEEEESCC
T ss_pred hHHH-HHHHhccCCEEEEEecCCC
Confidence 5433 3332333334666676553
No 22
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.77 E-value=2.2e-08 Score=99.61 Aligned_cols=135 Identities=14% Similarity=0.144 Sum_probs=87.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh--CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~--~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..+++.|++|+..++.+ .-+++.+|.||||| .+..-.+++.+.. ..+.++|+++||...++.+.+++.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~~---~~~l~~a~TGsGKT-----~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHG---RELLASAPTGSGKT-----LAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp CSCCHHHHHHHHHHHTT---CCEEEECCTTSCHH-----HHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCCcHH-----HHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 46899999999999873 35899999999999 7655555555543 24568999999999999999988763
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC---CCCCCccEEEEecCC
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG---ITAGHFSHIFLIDAS 576 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~---~~~~~F~~IiIDEAs 576 (651)
..... +++.. +....... ..+. ......++|+++|......+...+ +...++++||||||-
T Consensus 122 ~~~~~-~~~~~-------~~~~~~~~-----~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah 185 (245)
T 3dkp_A 122 SEGTG-FRIHM-------IHKAAVAA-----KKFG---PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESD 185 (245)
T ss_dssp TTTSC-CCEEC-------CCHHHHHH-----TTTS---TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHH
T ss_pred hcccC-ceEEE-------EecCccHH-----HHhh---hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChH
Confidence 32211 11110 10000000 0000 111256789999988665544332 445578999999997
Q ss_pred CCCh
Q 006311 577 SATE 580 (651)
Q Consensus 577 QatE 580 (651)
.+.+
T Consensus 186 ~~~~ 189 (245)
T 3dkp_A 186 KLFE 189 (245)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6544
No 23
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.76 E-value=1.7e-08 Score=100.46 Aligned_cols=154 Identities=10% Similarity=0.074 Sum_probs=92.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++. ..-++|.+|+||||| .+.+..+++.+.. ..+.++|+++||...++.+.+++....
T Consensus 51 ~~~~~~Q~~ai~~i~~---~~~~li~apTGsGKT-----~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK---GYDVIAQAQSGTGKT-----ATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEECCCSSHHHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC---CCCEEEECCCCCcHH-----HHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHh
Confidence 4689999999999987 345899999999999 7766556554432 246799999999999999998887632
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhh-cCCCCCCccEEEEecCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASS 577 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAsQ 577 (651)
... -+++.... .+.... ...+.+ ..++|+++|......... ..+....+++||||||-.
T Consensus 123 ~~~-~~~~~~~~----------------g~~~~~-~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 123 DYM-GATCHACI----------------GGTNVR-NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp TTT-TCCEEEEC----------------C--------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH
T ss_pred hhc-CceEEEEE----------------CCCchH-HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH
Confidence 211 01111000 000000 000111 237899999876544333 224456799999999975
Q ss_pred CChH---hHHHHHhccccCCCeEEEEe
Q 006311 578 ATEP---ETMIVLGNLANENTRVIVTG 601 (651)
Q Consensus 578 atEp---E~LIpL~~la~~~~rvVLaG 601 (651)
+.+. ..+.-+........++++..
T Consensus 185 ~~~~~~~~~l~~i~~~~~~~~~~i~~S 211 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQKLNTSIQVVLLS 211 (237)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEC
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEE
Confidence 4332 12222222223345666554
No 24
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.73 E-value=1.8e-08 Score=99.71 Aligned_cols=132 Identities=11% Similarity=0.026 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH-HhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll-~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++. ..-+++.+|.|+||| .+.+-.+++.+ ....+.++|+++||...++++.+++....
T Consensus 45 ~~~~~~Q~~~i~~~~~---~~~~l~~a~TGsGKT-----~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRC---GLDLIVQAKSGTGKT-----CVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEEECCTTSSHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC---CCCEEEECCCCCcHH-----HHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3689999999999887 346899999999999 66544444433 33356799999999999999999887632
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCCCCCccEEEEecCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDASSA 578 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~~IiIDEAsQa 578 (651)
....-+++..... +.+.. ...+.+.+++|+++|......+... .+...++++||||||-..
T Consensus 117 ~~~~~~~~~~~~g---~~~~~--------------~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 178 (230)
T 2oxc_A 117 IKMEGLECHVFIG---GTPLS--------------QDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 178 (230)
T ss_dssp TTSTTCCEEEECT---TSCHH--------------HHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHH
T ss_pred cccCCceEEEEeC---CCCHH--------------HHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHh
Confidence 2111112111000 00000 0122345689999999876554432 234457899999999765
No 25
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.73 E-value=4.9e-08 Score=107.37 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh--
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD-- 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~-- 499 (651)
..|++.|.+|+..++.. .-.+|.||.|+||| .+.+.++.+.+.. .+.++||++|+...+++..+++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT-----~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN---RRRILNLPTSAGRS-----LIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp ECCCHHHHHHHHHHHHH---SEEEEECCSTTTHH-----HHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHhc---CCcEEEeCCCCCHH-----HHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 37999999999999973 45799999999999 8877777777764 4559999999999999999999653
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
.++..+..+..... .........+|+++|..+..... ......|++||||||....
T Consensus 183 ~~~~~v~~~~~~~~----------------------~~~~~~~~~~I~i~T~~~l~~~~--~~~~~~~~liIiDE~H~~~ 238 (510)
T 2oca_A 183 FSHAMIKKIGGGAS----------------------KDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLAT 238 (510)
T ss_dssp SCGGGEEECGGGCC----------------------TTGGGCTTCSEEEEEHHHHTTSC--GGGGGGEEEEEEETGGGCC
T ss_pred CCccceEEEecCCc----------------------cccccccCCcEEEEeHHHHhhch--hhhhhcCCEEEEECCcCCC
Confidence 22112222211100 00012256889999998654321 1123468999999999888
Q ss_pred hHhHHHHHhccccCCCeEEEEeCC
Q 006311 580 EPETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 580 EpE~LIpL~~la~~~~rvVLaGD~ 603 (651)
....---+..+......+.|.|=|
T Consensus 239 ~~~~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 239 GKSISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp HHHHHHHGGGCTTCCEEEEEESCG
T ss_pred cccHHHHHHhcccCcEEEEEEeCC
Confidence 766444334332222344455654
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.70 E-value=5.6e-08 Score=103.29 Aligned_cols=153 Identities=14% Similarity=0.021 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC-
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI- 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l- 500 (651)
..|.+.|++|+..++.. -.+|.+|+|+||| .+.+.++.+.+. .++.++||++|+.+.+++..+++.+..
T Consensus 8 ~~l~~~Q~~~i~~~~~~----~~ll~~~tG~GKT-----~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET----NCLIVLPTGLGKT-----LIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp HCCCHHHHHHHHHGGGS----CEEEECCTTSCHH-----HHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CCccHHHHHHHHHHhhC----CEEEEcCCCCCHH-----HHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 46899999999998872 7899999999999 887777777766 368899999999999999999998743
Q ss_pred -CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEEEecCCCC
Q 006311 501 -PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 501 -~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAsQa 578 (651)
+...+..+... ....- .......++|+++|......... ..+....|++||||||..+
T Consensus 78 ~~~~~v~~~~g~------~~~~~--------------~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 78 LPPEKIVALTGE------KSPEE--------------RSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp SCGGGEEEECSC------SCHHH--------------HHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGC
T ss_pred cchhheEEeeCC------cchhh--------------hhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCccc
Confidence 11122111111 00000 01123468999999987765433 2345567999999999888
Q ss_pred ChHhHHHHHhc----cccCCCeEEEEeCCC
Q 006311 579 TEPETMIVLGN----LANENTRVIVTGAPH 604 (651)
Q Consensus 579 tEpE~LIpL~~----la~~~~rvVLaGD~~ 604 (651)
.......-+.. .......+.|.|=|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 138 VGNYAYVFIAREYKRQAKNPLVIGLTASPG 167 (494)
T ss_dssp STTCHHHHHHHHHHHHCSSCCEEEEESCSC
T ss_pred CCCCcHHHHHHHHHhcCCCCeEEEEecCCC
Confidence 74322111111 112234666777654
No 27
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.68 E-value=1e-07 Score=100.64 Aligned_cols=156 Identities=10% Similarity=0.017 Sum_probs=96.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++.. .-++|.+|+|+||| .+....+++.+... .+.++|+++|+...++++.+++....
T Consensus 42 ~~~~~~Q~~~i~~i~~~---~~~li~a~TGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAITG---RDILARAKNGTGKT-----AAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp CSCCHHHHHHHHHHHHT---CCEEEECCTTSCHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC---CCEEEECCCCcHHH-----HHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHh
Confidence 36899999999999973 45899999999999 76666665554432 45689999999999999998887633
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-CCCCCccEEEEecCCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDEAsQat 579 (651)
.... +++.... ...... ... ......++|+++|......+...+ .....+++||||||..+.
T Consensus 114 ~~~~-~~~~~~~---g~~~~~-~~~------------~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 114 KHCG-ISCMVTT---GGTNLR-DDI------------LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 176 (400)
T ss_dssp TTTT-CCEEEEC---SSSCHH-HHH------------HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHS
T ss_pred cccC-ceEEEEe---CCcchH-HHH------------HHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhh
Confidence 2211 1111000 000000 000 011246789999988665443322 344579999999998776
Q ss_pred hHhHHHHHhc---cccCCCeEEEEeC
Q 006311 580 EPETMIVLGN---LANENTRVIVTGA 602 (651)
Q Consensus 580 EpE~LIpL~~---la~~~~rvVLaGD 602 (651)
+....-.+.. ......++++..-
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~lSA 202 (400)
T 1s2m_A 177 SRDFKTIIEQILSFLPPTHQSLLFSA 202 (400)
T ss_dssp SHHHHHHHHHHHTTSCSSCEEEEEES
T ss_pred hhchHHHHHHHHHhCCcCceEEEEEe
Confidence 6543222221 2223456665543
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.68 E-value=1.1e-07 Score=99.36 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++.. ...-++|.+|.|+||| .+....+++.+.. ..+.++|+++||...+++..+++.+..
T Consensus 26 ~~~~~~Q~~~i~~~~~~-~~~~~lv~a~TGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN-PPRNMIAQSQSGTGKT-----AAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp CSCCHHHHHHHHHHHCS-SCCCEEEECCTTSCHH-----HHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEECCCCCcHH-----HHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh
Confidence 47899999999999873 2357899999999999 7666666554432 246799999999999999999887632
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEEEecCCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAsQat 579 (651)
.... ++.... .+.... .....+++|+++|......... ..+...++++||||||-...
T Consensus 100 ~~~~-~~~~~~-----------------~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 100 KFTK-ITSQLI-----------------VPDSFE---KNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp TTSC-CCEEEE-----------------STTSSC---TTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred cccC-eeEEEE-----------------ecCchh---hhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 1111 000000 000000 1112467899999887654432 23345679999999997543
Q ss_pred h----HhHHHHHhccccCCCeEEEEeCC
Q 006311 580 E----PETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 580 E----pE~LIpL~~la~~~~rvVLaGD~ 603 (651)
+ ...+..+......+.++++..-.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT 186 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSAT 186 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEec
Confidence 3 23333343344445677766544
No 29
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.67 E-value=1.4e-07 Score=99.58 Aligned_cols=157 Identities=10% Similarity=0.014 Sum_probs=96.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++.. ...-++|.+|.|+||| .+....+++.+.. ..+.++|+++||...++++.+++....
T Consensus 46 ~~~~~~Q~~~i~~~~~~-~~~~~lv~apTGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKT-----AAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp CSCCHHHHHHHHHHHSS-SCCCEEEECCTTSCHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC-CCCeEEEECCCCchHH-----HHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 47899999999999973 2357899999999999 6655555554433 244589999999999999988776522
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh--cCCCCCCccEEEEecCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN--QGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~--~~~~~~~F~~IiIDEAsQa 578 (651)
....-+++..... +..+. .......+|+++|......... ..+....+++||||||-.+
T Consensus 120 ~~~~~~~~~~~~~----------------~~~~~---~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~ 180 (412)
T 3fht_A 120 KFYPELKLAYAVR----------------GNKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 180 (412)
T ss_dssp TTSTTCCEEEECT----------------TCCCC---TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHH
T ss_pred hhcccceEEEeec----------------Ccchh---hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHH
Confidence 1111111111000 00000 0112456899999887654432 2234457999999999743
Q ss_pred Ch----HhHHHHHhccccCCCeEEEEeCC
Q 006311 579 TE----PETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 579 tE----pE~LIpL~~la~~~~rvVLaGD~ 603 (651)
.+ ...+..+......+.++++..-.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 209 (412)
T 3fht_A 181 IATQGHQDQSIRIQRMLPRNCQMLLFSAT 209 (412)
T ss_dssp HSTTTTHHHHHHHHHTSCTTCEEEEEESC
T ss_pred hhcCCcHHHHHHHHhhCCCCceEEEEEee
Confidence 32 22333333344455677776654
No 30
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.66 E-value=4.5e-08 Score=110.10 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-------CCCeEEEEccChhhHHHH
Q 006311 422 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-------PKSRILICAPWNRTCDKL 492 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-------~~~rILVcApSNsAaD~l 492 (651)
..|.+.|.+|+..++.. .+..-.+|.+|.||||| .+.+.++..+++.. ...+||+++|+++-+++.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT-----~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~ 251 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKT-----VVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDP 251 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHH-----HHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC--------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChH-----HHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHH
Confidence 57999999999998863 23455799999999999 88888888887764 678999999999988887
Q ss_pred HHHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhh-----hcCCCCCCc
Q 006311 493 MECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-----NQGITAGHF 567 (651)
Q Consensus 493 ~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~-----~~~~~~~~F 567 (651)
..+....+.. .+..+ ... ..-..++|+++|........ ...+...+|
T Consensus 252 ~~~~~~~~~~-~~~~~--------------------~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~ 303 (590)
T 3h1t_A 252 KDKTFTPFGD-ARHKI--------------------EGG-------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFF 303 (590)
T ss_dssp ---CCTTTCS-SEEEC--------------------CC---------CCSSCSEEEEEGGGC------CCGGGGSCTTSC
T ss_pred HHHHHHhcch-hhhhh--------------------hcc-------CCCCCCcEEEEEhhhhccccccccccccCCCCcc
Confidence 7332221111 00000 000 11146789999988765432 123566789
Q ss_pred cEEEEecCCCCChH--hHHHHHhccccCCCeEEEEeCCCC
Q 006311 568 SHIFLIDASSATEP--ETMIVLGNLANENTRVIVTGAPHN 605 (651)
Q Consensus 568 ~~IiIDEAsQatEp--E~LIpL~~la~~~~rvVLaGD~~Q 605 (651)
++||||||...... ..+-.+.........+.|.|=|.+
T Consensus 304 ~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~ 343 (590)
T 3h1t_A 304 DLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLR 343 (590)
T ss_dssp SEEEESCCC---------CHHHHHHSTTSEEEEEESSCSC
T ss_pred CEEEEECCccccccchHHHHHHHHhCCcceEEEecccccc
Confidence 99999999887653 222222222222346777777664
No 31
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.64 E-value=3.5e-08 Score=96.61 Aligned_cols=158 Identities=9% Similarity=0.059 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++. ..-.++.+|.||||| .+....+++.+.. ..+.++||++||...++++.+++.+..
T Consensus 25 ~~~~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT-----~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR---GESMVGQSQTGTGKT-----HAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp CSCCHHHHHHHHHHHH---TCCEEEECCSSHHHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---CCCEEEECCCCChHH-----HHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 4689999999999997 356899999999999 7655555554432 245799999999999999998876521
Q ss_pred CCc---chhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCCCCCccEEEEecCC
Q 006311 501 PAS---EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDAS 576 (651)
Q Consensus 501 ~~~---~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~~IiIDEAs 576 (651)
... .-+++.... .+.+. . .... ..-.+++|+++|.......... .+....+++||||||-
T Consensus 97 ~~~~~~~~~~~~~~~---g~~~~--~-------~~~~----~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 97 KFCPKDRMIVARCLI---GGTDK--Q-------KALE----KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 160 (219)
T ss_dssp TTSCGGGCCCEEEEC---CCSHH--H-------HTTC----CCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH
T ss_pred hhcccccceEEEEEe---CCCCH--H-------HHHH----HcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch
Confidence 111 011111100 00000 0 0000 0113578999998766554332 2344568999999997
Q ss_pred CCChHh---HHHHHhccccCCCeEEEEeCC
Q 006311 577 SATEPE---TMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 577 QatEpE---~LIpL~~la~~~~rvVLaGD~ 603 (651)
...+.. .+.-+......+.++++..-.
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 190 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSAT 190 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecC
Confidence 544321 122222222334566666544
No 32
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.64 E-value=1.6e-07 Score=93.90 Aligned_cols=133 Identities=12% Similarity=0.047 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC----------CCCeEEEEccChhhHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----------PKSRILICAPWNRTCDK 491 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~----------~~~rILVcApSNsAaD~ 491 (651)
..+++.|++|+..++. ..-+++.+|.||||| .+.+..+++.+... .+.++||++||...+++
T Consensus 44 ~~~~~~Q~~~i~~i~~---~~~~l~~a~TGsGKT-----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE---HRDIMACAQTGSGKT-----AAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQ 115 (253)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEEECCTTSSHH-----HHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---CCCEEEECCCCChHH-----HHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHH
Confidence 4789999999999987 346899999999999 77666666555421 23589999999999999
Q ss_pred HHHHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCCCCCccEE
Q 006311 492 LMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHI 570 (651)
Q Consensus 492 l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~~I 570 (651)
+.+++....... -+++...... ....... ......++|+++|......+... .+....+++|
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~~g~-~~~~~~~---------------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~l 178 (253)
T 1wrb_A 116 ILSESQKFSLNT-PLRSCVVYGG-ADTHSQI---------------REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYI 178 (253)
T ss_dssp HHHHHHHHHTTS-SCCEEEECSS-SCSHHHH---------------HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEE
T ss_pred HHHHHHHHhccC-CceEEEEECC-CCHHHHH---------------HHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEE
Confidence 998876521111 0111100000 0000000 01124578999999877554432 2344578999
Q ss_pred EEecCCCCC
Q 006311 571 FLIDASSAT 579 (651)
Q Consensus 571 iIDEAsQat 579 (651)
|||||-.+.
T Consensus 179 ViDEah~~~ 187 (253)
T 1wrb_A 179 VLDEADRML 187 (253)
T ss_dssp EEETHHHHH
T ss_pred EEeCHHHHH
Confidence 999997644
No 33
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.64 E-value=1.1e-07 Score=100.40 Aligned_cols=158 Identities=13% Similarity=0.078 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++.+ .-++|.+|.|+||| .+....+++.+... .+.++|+++|+...++++.+++....
T Consensus 61 ~~~~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 132 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKG---YDVIAQAQSGTGKT-----ATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALG 132 (414)
T ss_dssp CSCCHHHHHHHHHHHTT---CCEEECCCSCSSSH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHhHHHhCC---CCEEEECCCCCccc-----HHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHh
Confidence 46899999999999973 34899999999999 77666666555432 56789999999999999998887621
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhh-hcCCCCCCccEEEEecCCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~-~~~~~~~~F~~IiIDEAsQat 579 (651)
... -.++...... ......... -....++|+++|........ ...+...++++||||||-.+.
T Consensus 133 ~~~-~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~ 196 (414)
T 3eiq_A 133 DYM-GASCHACIGG-TNVRAEVQK--------------LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 196 (414)
T ss_dssp GGS-CCCEEECCCC-TTHHHHHHH--------------HTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHH
T ss_pred ccc-CceEEEEECC-cchHHHHHH--------------HhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhh
Confidence 110 0111100000 000000000 01145789999987654433 333455679999999997643
Q ss_pred hHh---HHHHHhccccCCCeEEEEeCC
Q 006311 580 EPE---TMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 580 EpE---~LIpL~~la~~~~rvVLaGD~ 603 (651)
+.. .+.-+......+.++|+..-.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 197 SRGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp HTTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred ccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 322 222232233345667766543
No 34
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.64 E-value=7.8e-08 Score=96.83 Aligned_cols=134 Identities=10% Similarity=0.012 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++. ..-.++.+|.||||| .+....+++.+.. ..+.++||++||...++++.+++....
T Consensus 64 ~~~~~~Q~~~i~~i~~---~~~~lv~a~TGsGKT-----~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 135 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ---GRDIIGLAETGSGKT-----GAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALG 135 (249)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEEECCTTSCHH-----HHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---CCCEEEEcCCCCCch-----hHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 4789999999999987 356899999999999 7765555554443 345689999999999999998876521
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh--cCCCCCCccEEEEecCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN--QGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~--~~~~~~~F~~IiIDEAsQa 578 (651)
... -+++... ....... .. ......+++|+++|......... ..+....+++||||||-.+
T Consensus 136 ~~~-~~~~~~~---~g~~~~~-~~------------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 136 SSI-GVQSAVI---VGGIDSM-SQ------------SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp GGG-TCCEEEE---CTTSCHH-HH------------HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred ccC-CeeEEEE---ECCCChH-HH------------HHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 110 0111100 0000000 00 01122567899999886654332 2344567999999999754
Q ss_pred Ch
Q 006311 579 TE 580 (651)
Q Consensus 579 tE 580 (651)
.+
T Consensus 199 ~~ 200 (249)
T 3ber_A 199 LN 200 (249)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 35
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.64 E-value=5.6e-08 Score=99.54 Aligned_cols=127 Identities=9% Similarity=0.118 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|++|+..++. ..-++|.+|+|+||| .+....+++ . +.++|+++|+...+++..+++.+...
T Consensus 15 ~~l~~~Q~~~i~~i~~---~~~~lv~~~TGsGKT-----~~~~~~~~~---~--~~~~liv~P~~~L~~q~~~~~~~~~~ 81 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ---GKNVVVRAKTGSGKT-----AAYAIPILE---L--GMKSLVVTPTRELTRQVASHIRDIGR 81 (337)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEEECCTTSSHH-----HHHHHHHHH---H--TCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEcCCCCcHH-----HHHHHHHHh---h--cCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 4689999999999987 346899999999999 665444433 2 67999999999999999999876321
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCCCCCccEEEEecCCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~~IiIDEAsQat 579 (651)
... .++.... ...+.. ...+.+.+++|+++|.......... .+....|++||||||..+.
T Consensus 82 ~~~-~~~~~~~---~~~~~~--------------~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 142 (337)
T 2z0m_A 82 YMD-TKVAEVY---GGMPYK--------------AQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMF 142 (337)
T ss_dssp TSC-CCEEEEC---TTSCHH--------------HHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHH
T ss_pred hcC-CcEEEEE---CCcchH--------------HHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhh
Confidence 110 0111000 000000 0112345688999998876554332 2344568999999997543
No 36
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.63 E-value=6.8e-08 Score=101.30 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++. ..-++|.+|+|+||| .+.+.++++.+.. ..+.++|+++|+...++++.+++.+..
T Consensus 42 ~~~~~~Q~~~i~~i~~---~~~~lv~~~TGsGKT-----~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE---GHDVLAQAQSGTGKT-----GTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp CSCCHHHHHHHHHHHH---TCCEEECCCSSHHHH-----HHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC---CCCEEEECCCCChHH-----HHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 4789999999999998 345899999999999 7755555554433 246699999999999999998887632
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEEEecCCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAsQat 579 (651)
.... +++.... ...... ...+.+.+++|+++|......... ..+....+++||||||....
T Consensus 114 ~~~~-~~~~~~~---g~~~~~--------------~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 114 FHMD-IKVHACI---GGTSFV--------------EDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp TTSC-CCEEEEC---SSCCHH--------------HHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred ccCC-eeEEEEe---CCCchH--------------HHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 2211 1111100 000000 011233468899999887654332 23445679999999997643
Q ss_pred hH---hHHHHHhccccCCCeEEEEeCC
Q 006311 580 EP---ETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 580 Ep---E~LIpL~~la~~~~rvVLaGD~ 603 (651)
+. ..+.-+........++++..-.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~SAT 202 (394)
T 1fuu_A 176 SSGFKEQIYQIFTLLPPTTQVVLLSAT 202 (394)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred CCCcHHHHHHHHHhCCCCceEEEEEEe
Confidence 22 1222222233344566665543
No 37
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.63 E-value=1.5e-07 Score=93.75 Aligned_cols=157 Identities=8% Similarity=-0.037 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh------CCCCeEEEEccChhhHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR------SPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~------~~~~rILVcApSNsAaD~l~~r 495 (651)
..+++.|++|+..++. ..-.++.+|.||||| .+..-.+++.+.. ..+.++|+.+||...++++.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~---g~~~l~~apTGsGKT-----~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 121 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS---GLDMVGVAQTGSGKT-----LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV 121 (242)
T ss_dssp CSCCHHHHHHHHHHHH---TCCEEEEECTTSCHH-----HHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---CCCEEEECCCcCHHH-----HHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHH
Confidence 4689999999999987 346899999999999 6655555544442 2366899999999999999877
Q ss_pred HHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEEEec
Q 006311 496 LMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLID 574 (651)
Q Consensus 496 L~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDE 574 (651)
+........ +++... ....+..-. ....-.+++|+|+|......+.. ..+...++++|||||
T Consensus 122 ~~~~~~~~~-~~~~~~---~g~~~~~~~-------------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 122 AAEYCRACR-LKSTCI---YGGAPKGPQ-------------IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp HHHHHHHTT-CCEEEE---CTTSCHHHH-------------HHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred HHHHHhhcC-ceEEEE---ECCCChHHH-------------HHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 765211000 111000 000000000 00112357899999886654332 234456789999999
Q ss_pred CCCCChH---hHHHHHhccccCCCeEEEEeCC
Q 006311 575 ASSATEP---ETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 575 AsQatEp---E~LIpL~~la~~~~rvVLaGD~ 603 (651)
|-.+.+. ..+.-+......+.++++..-.
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 9654332 1122222233345567766543
No 38
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.62 E-value=8.6e-08 Score=97.26 Aligned_cols=133 Identities=8% Similarity=0.033 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-----CCCCeEEEEccChhhHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-----SPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-----~~~~rILVcApSNsAaD~l~~rL 496 (651)
..+++.|.+|+..++.+ .-++++||.||||| .+..-.+++.+.. ..+.++|+.+||...|.++.+++
T Consensus 75 ~~~~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT-----~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 146 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEG---RDLLAAAKTGSGKT-----LAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVL 146 (262)
T ss_dssp CBCCHHHHHHHHHHHHT---CCCEECCCTTSCHH-----HHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC---CcEEEEccCCCCch-----HHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 35899999999999983 45899999999999 7655555555443 14678999999999999999988
Q ss_pred HhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh--cCCCCCCccEEEEec
Q 006311 497 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN--QGITAGHFSHIFLID 574 (651)
Q Consensus 497 ~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~--~~~~~~~F~~IiIDE 574 (651)
.+...... .++.... ......-. ........+|+|+|......... ..+....+++|||||
T Consensus 147 ~~~~~~~~-~~~~~~~---g~~~~~~~-------------~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 147 KELMTHHV-HTYGLIM---GGSNRSAE-------------AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp HHHTTTCC-SCEEEEC---SSSCHHHH-------------HHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred HHHHhhcC-ceEEEEE---CCCCHHHH-------------HHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 76332211 1111000 00000000 00112357899999775543322 124455789999999
Q ss_pred CCCCC
Q 006311 575 ASSAT 579 (651)
Q Consensus 575 AsQat 579 (651)
|-.+.
T Consensus 210 ah~l~ 214 (262)
T 3ly5_A 210 ADRIL 214 (262)
T ss_dssp HHHHH
T ss_pred hHHHh
Confidence 96543
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.62 E-value=1.3e-07 Score=104.03 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC---CCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~---~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..+.+.|.+|+..++. ..-.+|.+|.|+||| .+....+++.+...+ +.++||++||...+.+..+.+..
T Consensus 6 ~~~~~~Q~~~i~~~~~---~~~~l~~~~tGsGKT-----~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN---GKNALICAPTGSGKT-----FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp --CCHHHHHHHHHHHT---TCCEEEECCTTSCHH-----HHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCEEEEcCCCChHH-----HHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4689999999999987 345899999999999 777777777777655 78999999999999999988876
Q ss_pred hCC--CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-C-CCCCccEEEEec
Q 006311 499 DIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-I-TAGHFSHIFLID 574 (651)
Q Consensus 499 ~l~--~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~-~~~~F~~IiIDE 574 (651)
..+ +..+..+... . ............++|+|+|..........+ + ...++++|||||
T Consensus 78 ~~~~~~~~~~~~~g~------~-------------~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 138 (556)
T 4a2p_A 78 HFERQGYSVQGISGE------N-------------FSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 138 (556)
T ss_dssp HHGGGTCCEEECCCC------------------------CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEET
T ss_pred HhcccCceEEEEeCC------C-------------CcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEEC
Confidence 322 1111111110 0 000001123356889999998776554433 3 456799999999
Q ss_pred CCCCChHh
Q 006311 575 ASSATEPE 582 (651)
Q Consensus 575 AsQatEpE 582 (651)
|-.+....
T Consensus 139 ah~~~~~~ 146 (556)
T 4a2p_A 139 CHNTTGNH 146 (556)
T ss_dssp GGGCSTTS
T ss_pred CcccCCcc
Confidence 98877553
No 40
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.62 E-value=1.3e-07 Score=99.18 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++. ..-++|.+|+|+||| .+...++++.+... .+.++|+++||...++++.+++....
T Consensus 29 ~~~~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT-----~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 29 EHPSEVQHECIPQAIL---GMDVLCQAKSGMGKT-----AVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp CSCCHHHHHHHHHHTT---TCCEEEECSSCSSHH-----HHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc---CCcEEEECCCCCcHH-----HHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHH
Confidence 3689999999999987 346899999999999 76666666554432 35699999999999999988876632
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhh-cCCCCCCccEEEEecCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASS 577 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAsQ 577 (651)
....-+++..... .....- ..+.+ ..++|+++|......+.. ..+....+++||||||-.
T Consensus 101 ~~~~~~~~~~~~g---~~~~~~--------------~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 101 KYMPNVKVAVFFG---GLSIKK--------------DEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 163 (391)
T ss_dssp TTCTTCCEEEECT---TSCHHH--------------HHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHH
T ss_pred hhCCCeEEEEEeC---CCCHHH--------------HHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHH
Confidence 2111111111100 000000 00111 236899999887654432 224456799999999987
Q ss_pred CCh
Q 006311 578 ATE 580 (651)
Q Consensus 578 atE 580 (651)
..+
T Consensus 164 ~~~ 166 (391)
T 1xti_A 164 MLE 166 (391)
T ss_dssp HTS
T ss_pred Hhh
Confidence 765
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.60 E-value=1.1e-07 Score=104.13 Aligned_cols=134 Identities=10% Similarity=0.033 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC---CCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~---~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..|.+.|.+|+..++. ..-++|.+|.|+||| .+....+.+.+...+ +.++||++||...+.+..+.+..
T Consensus 3 ~~~~~~Q~~~i~~~~~---~~~~l~~~~tGsGKT-----~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK---GKNTIICAPTGCGKT-----FVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCHHHHHHHHHHHT---TCCEEEECCTTSCHH-----HHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhC---CCCEEEEeCCCChHH-----HHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4689999999999987 346899999999999 887777777777655 78999999999999999888876
Q ss_pred hCC--CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-C-CCCCccEEEEec
Q 006311 499 DIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-I-TAGHFSHIFLID 574 (651)
Q Consensus 499 ~l~--~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~-~~~~F~~IiIDE 574 (651)
..+ +..+..+.... ............++|+++|..........+ + ...++++|||||
T Consensus 75 ~~~~~~~~~~~~~g~~-------------------~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 135 (555)
T 3tbk_A 75 YFERLGYNIASISGAT-------------------SDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDE 135 (555)
T ss_dssp HHHTTTCCEEEECTTT-------------------GGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETT
T ss_pred HhccCCcEEEEEcCCC-------------------cchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEEC
Confidence 321 11111111100 000001123356889999998776554432 2 345689999999
Q ss_pred CCCCChHh
Q 006311 575 ASSATEPE 582 (651)
Q Consensus 575 AsQatEpE 582 (651)
|-.+....
T Consensus 136 ah~~~~~~ 143 (555)
T 3tbk_A 136 CHNTSKNH 143 (555)
T ss_dssp GGGCSTTC
T ss_pred ccccCCcc
Confidence 98877653
No 42
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.60 E-value=1.9e-07 Score=99.13 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=97.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++.+ .-+++.+|.||||| .+....+++.+.. ..+.++|+++||...+.++.+++....
T Consensus 58 ~~~~~~Q~~ai~~i~~~---~~~lv~a~TGsGKT-----~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIKG---RDVIAQSQSGTGKT-----ATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp CSCCHHHHHHHHHHHTT---CCEEEECCTTSSHH-----HHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCCCch-----HHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 36899999999999873 45899999999999 7766666665532 256799999999999999999887622
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cCCCCCCccEEEEecCCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~~~~~~F~~IiIDEAsQat 579 (651)
... -+++...... ....... ...-...+|+++|......+.. ..+....+++||||||-.+.
T Consensus 130 ~~~-~~~~~~~~g~-~~~~~~~---------------~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 130 DYM-NVQCHACIGG-TNVGEDI---------------RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp TTT-TCCEEEECTT-SCHHHHH---------------HHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHT
T ss_pred ccC-CeEEEEEECC-CCHHHHH---------------HHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHH
Confidence 111 1111110000 0000000 0111356899999876544332 23455679999999997654
Q ss_pred hHh---HHHHHhccccCCCeEEEEeCC
Q 006311 580 EPE---TMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 580 EpE---~LIpL~~la~~~~rvVLaGD~ 603 (651)
+.. .+.-+........++++..-.
T Consensus 193 ~~~~~~~~~~i~~~~~~~~~~i~~SAT 219 (410)
T 2j0s_A 193 NKGFKEQIYDVYRYLPPATQVVLISAT 219 (410)
T ss_dssp STTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred hhhhHHHHHHHHHhCccCceEEEEEcC
Confidence 432 223333233345567765543
No 43
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.57 E-value=3e-07 Score=95.43 Aligned_cols=156 Identities=10% Similarity=0.015 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH-hCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~-~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++.+. ..-+++++|.||||| .+.+-.+++.+. ...+.++||.+||..-|.++.+.+....
T Consensus 113 ~~pt~iQ~~ai~~il~~~-~~~~l~~a~TGsGKT-----~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEP-PQNLIAQSQSGTGKT-----AAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp CSCCHHHHHHHHHHTSSS-CCCEEEECCTTSSHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCC-CCeEEEECCCCCCcc-----HHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 467899999999998731 246899999999999 654434444333 2344589999999999999887776522
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh--cCCCCCCccEEEEecCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN--QGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~--~~~~~~~F~~IiIDEAsQa 578 (651)
....-+++... ..+.... .......+|+|+|......+.. ..+...++++||||||-.+
T Consensus 187 ~~~~~~~~~~~----------------~~~~~~~---~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 187 KFYPELKLAYA----------------VRGNKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp TTSTTCCEEEE----------------STTCCCC---TTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHH
T ss_pred hhCCCcEEEEE----------------eCCccHh---hhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHH
Confidence 11111111110 0000000 0112456899999887644432 2244457899999999754
Q ss_pred Ch----HhHHHHHhccccCCCeEEEEeC
Q 006311 579 TE----PETMIVLGNLANENTRVIVTGA 602 (651)
Q Consensus 579 tE----pE~LIpL~~la~~~~rvVLaGD 602 (651)
.+ .+.+.-+......+.++++..-
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~q~i~~SA 275 (300)
T 3fmo_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSA 275 (300)
T ss_dssp HHSTTHHHHHHHHHTTSCTTCEEEEEES
T ss_pred hhccCcHHHHHHHHHhCCCCCEEEEEec
Confidence 43 1233333333344456666543
No 44
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.54 E-value=1.4e-07 Score=100.83 Aligned_cols=126 Identities=11% Similarity=0.120 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC-
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP- 501 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~- 501 (651)
.+++.|++|+..++. ..-+++.+|.||||| .....++++.. ..+.++|+++||...|.++.+++.+...
T Consensus 21 ~~~~~Q~~~i~~i~~---~~~~lv~apTGsGKT-----~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 90 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQ---GKSFTMVAPTGVGKT-----TFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADE 90 (414)
T ss_dssp CCCHHHHHHHHHHTT---TCCEECCSCSSSSHH-----HHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHhc---CCCEEEEeCCCCCHH-----HHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHccC
Confidence 568999999999987 346899999999999 64444444444 3578999999999999999999987332
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 576 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs 576 (651)
+.++..+.. ..+..-.. ...+.+ ..++|+++|.......... +...++++||||||-
T Consensus 91 ~~~v~~~~g------~~~~~~~~-----------~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 91 KVKIFGFYS------SMKKEEKE-----------KFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVD 149 (414)
T ss_dssp SCCEEECCT------TSCHHHHH-----------HHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHH
T ss_pred CceEEEEEC------CCChhhHH-----------HHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChH
Confidence 111111111 11110000 001112 2379999999876443322 445579999999994
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.52 E-value=2.6e-07 Score=100.56 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=93.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 421 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
...|++.|++|+..++.. .-.+|.||.|+||| .+...++.+. +.++||++|+.+.+.+..+++.+ +
T Consensus 91 ~~~l~~~Q~~ai~~i~~~---~~~ll~~~TGsGKT-----~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-~ 156 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD---KRGCIVLPTGSGKT-----HVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-F 156 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT---TEEEEECCTTSCHH-----HHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-G
T ss_pred CCCcCHHHHHHHHHHHhc---CCEEEEeCCCCCHH-----HHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-C
Confidence 357999999999998873 34899999999999 7665555543 67999999999999999988875 3
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCCh
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatE 580 (651)
+.. ++... .++.- ...+|+++|...+...... + ...|++||||||-....
T Consensus 157 -~~~--~v~~~-----------------~g~~~--------~~~~Ivv~T~~~l~~~~~~-~-~~~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 157 -GEE--YVGEF-----------------SGRIK--------ELKPLTVSTYDSAYVNAEK-L-GNRFMLLIFDEVHHLPA 206 (472)
T ss_dssp -CGG--GEEEB-----------------SSSCB--------CCCSEEEEEHHHHHHTHHH-H-TTTCSEEEEETGGGTTS
T ss_pred -CCc--ceEEE-----------------CCCcC--------CcCCEEEEEcHHHHHHHHH-h-cCCCCEEEEECCcCCCC
Confidence 111 01110 01000 2467999999876543321 1 13599999999988877
Q ss_pred HhHHHHHhccccCCCeEEEEeCCC
Q 006311 581 PETMIVLGNLANENTRVIVTGAPH 604 (651)
Q Consensus 581 pE~LIpL~~la~~~~rvVLaGD~~ 604 (651)
+..--.+. .......+.|.|=|.
T Consensus 207 ~~~~~~~~-~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 207 ESYVQIAQ-MSIAPFRLGLTATFE 229 (472)
T ss_dssp TTTHHHHH-TCCCSEEEEEESCCC
T ss_pred hHHHHHHH-hcCCCeEEEEecCcc
Confidence 65443333 333333556677665
No 46
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.52 E-value=1.3e-07 Score=105.03 Aligned_cols=154 Identities=13% Similarity=0.126 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
.+++.|++|+..++.. +..-++|.+|.||||| .+...++++.+... ++.++|+++|+...+++..+++.....
T Consensus 141 ~p~~~Q~~ai~~i~~~-~~~~~ll~apTGsGKT-----~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~ 214 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN-PPRNMIGQSQSGTGKT-----AAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGK 214 (508)
T ss_dssp ECCCTTSSSHHHHHCS-SCCCEEEECCSSTTSH-----HHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHST
T ss_pred CcHHHHHHHHHHHHcC-CCCCEEEECCCCccHH-----HHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCC
Confidence 5789999999999873 2367899999999999 77666666555432 356999999999999999999876432
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhh-hcCCCCCCccEEEEecCCCCCh
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~-~~~~~~~~F~~IiIDEAsQatE 580 (651)
... +++... . .+... ......++|+++|........ ...+....|++||||||-...+
T Consensus 215 ~~~-~~~~~~------~----------~~~~~----~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 215 YTE-VKTAFG------I----------KDSVP----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp TSS-CCEEC------------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred ccC-eeEEEE------e----------CCccc----ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 211 111000 0 00000 011136789999988765433 3344566799999999976544
Q ss_pred H----hHHHHHhccccCCCeEEEEeCC
Q 006311 581 P----ETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 581 p----E~LIpL~~la~~~~rvVLaGD~ 603 (651)
. ..+..+......+.++|+..-.
T Consensus 274 ~~~~~~~~~~i~~~~~~~~~~i~lSAT 300 (508)
T 3fho_A 274 QQGLGDQSMRIKHLLPRNTQIVLFSAT 300 (508)
T ss_dssp C--CHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cCCcHHHHHHHHHhCCcCCeEEEEeCC
Confidence 1 2233333333445677766543
No 47
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.50 E-value=5.2e-07 Score=98.52 Aligned_cols=157 Identities=9% Similarity=0.005 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..+++.|++|+..++.. ...-+++.||.||||| .+...++++.+.. ..+.++||++||...|.++.+++....
T Consensus 113 ~~p~~~Q~~ai~~il~~-~~~~~l~~a~TGsGKT-----~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKT-----AAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp CSCCHHHHHHHHHHTSB-SCCEEEEECCSSSSHH-----HHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-CCCcEEEEcCCCCchh-----HHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHH
Confidence 35677799999999873 2367899999999999 6655555544433 233489999999999999977765411
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc--CCCCCCccEEEEecCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ--GITAGHFSHIFLIDASSA 578 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~--~~~~~~F~~IiIDEAsQa 578 (651)
....-+++.... .+..+. ...-...+|+|+|.......... .++...+++||||||-.+
T Consensus 187 ~~~~~~~~~~~~----------------~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 187 KFYPELKLAYAV----------------RGNKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp TTSTTCCEEEES----------------TTCCCC---TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred hhCCCceEEEEe----------------CCcccc---ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 100001110000 000000 01113458999999876544321 244457899999999744
Q ss_pred Ch----HhHHHHHhccccCCCeEEEEeCC
Q 006311 579 TE----PETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 579 tE----pE~LIpL~~la~~~~rvVLaGD~ 603 (651)
.+ ...+..+......+.++|+..-.
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 276 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSAT 276 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESC
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCC
Confidence 32 23344444444455677777654
No 48
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.49 E-value=6.5e-07 Score=102.12 Aligned_cols=137 Identities=9% Similarity=0.066 Sum_probs=91.0
Q ss_pred CCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCC---CeEEEEccChhhHHHHHHHHH
Q 006311 421 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK---SRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~---~rILVcApSNsAaD~l~~rL~ 497 (651)
...+.+.|.+|+..++. ..-++|.+|.|+||| ......+++.+...+. .++||++||.+.+.+..+.+.
T Consensus 11 ~~~lr~~Q~~~i~~~l~---g~~~iv~~~TGsGKT-----l~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMK---GKNTIICAPTGCGKT-----FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp --CCCHHHHHHHHHHHT---TCCEEEECCTTSSHH-----HHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHc---CCCEEEEcCCCchHH-----HHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 35789999999999987 346899999999999 7666666666654332 799999999999999988887
Q ss_pred hhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-C-CCCCccEEEEecC
Q 006311 498 KDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-I-TAGHFSHIFLIDA 575 (651)
Q Consensus 498 ~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~-~~~~F~~IiIDEA 575 (651)
+..+... +++..... +.............++|+++|..........+ + ....|++||||||
T Consensus 83 ~~~~~~~-~~v~~~~g----------------~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEa 145 (696)
T 2ykg_A 83 KYFERHG-YRVTGISG----------------ATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 145 (696)
T ss_dssp HHTTTTT-CCEEEECS----------------SSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETG
T ss_pred HHhccCC-ceEEEEeC----------------CccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCC
Confidence 6443111 11111000 00001111122356899999998776554433 2 3456899999999
Q ss_pred CCCChHh
Q 006311 576 SSATEPE 582 (651)
Q Consensus 576 sQatEpE 582 (651)
-.+....
T Consensus 146 H~~~~~~ 152 (696)
T 2ykg_A 146 HNTSKQH 152 (696)
T ss_dssp GGCSTTC
T ss_pred CcccCcc
Confidence 8876543
No 49
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.46 E-value=6.4e-07 Score=94.88 Aligned_cols=133 Identities=14% Similarity=0.032 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHH-HHhCC------------------CCeEEEE
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI-RRRSP------------------KSRILIC 482 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql-l~~~~------------------~~rILVc 482 (651)
..+++.|++|+..++. ..-+++.+|.||||| .+..-.+++. ..... ..++|++
T Consensus 36 ~~~~~~Q~~~i~~i~~---~~~~lv~a~TGsGKT-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 107 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE---KRDLMACAQTGSGKT-----AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVL 107 (417)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEEECCTTSCHH-----HHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEE
T ss_pred CCCCHHHHHHHHHHcc---CCCEEEEcCCCCHHH-----HHHHHHHHHHHHhccccchhhccccccccccccCCccEEEE
Confidence 4789999999999887 456899999999999 6544444433 33211 2579999
Q ss_pred ccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh-cC
Q 006311 483 APWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QG 561 (651)
Q Consensus 483 ApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~-~~ 561 (651)
+||...|.++.+++.+...... +++... ....+.. ... ...-..++|+++|......... ..
T Consensus 108 ~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~---~g~~~~~-~~~------------~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 108 APTRELAVQIYEEARKFSYRSR-VRPCVV---YGGADIG-QQI------------RDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSS-CCEEEE---CSSSCHH-HHH------------HHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHHHhCcCC-ceEEEE---ECCCCHH-HHH------------HHhhCCCCEEEEChHHHHHHHHcCC
Confidence 9999999999998875211110 111100 0000000 000 0111357899999987655433 23
Q ss_pred CCCCCccEEEEecCCCCC
Q 006311 562 ITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 562 ~~~~~F~~IiIDEAsQat 579 (651)
+...++++||||||-...
T Consensus 171 ~~~~~~~~iViDEah~~~ 188 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRML 188 (417)
T ss_dssp BCCTTCCEEEESSHHHHH
T ss_pred cChhhCcEEEEEChhHhh
Confidence 445678999999997543
No 50
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.44 E-value=5.8e-07 Score=89.45 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC---CCeEEEEccChhhHHHHHHHHHhh
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~---~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
.+.+.|.+++..+.. ...++|.||.||||| +.+...+++...... ..++++.+|+...+..+.+++...
T Consensus 61 p~~~~q~~~i~~i~~---g~~~~i~g~TGsGKT-----t~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 61 PVKKFESEILEAISQ---NSVVIIRGATGCGKT-----TQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp GGGGGHHHHHHHHHH---CSEEEEECCTTSSHH-----HHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhc---CCEEEEEeCCCCCcH-----HhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH
Confidence 356779999999887 468899999999999 766666655433221 348999999999999999998763
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCC-
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA- 578 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQa- 578 (651)
+...--..++...+ .... ..-.+.+|+++|..........+ ..++++||||||-..
T Consensus 133 ~~~~~~~~~g~~~~---------------~~~~------~~~~~~~Ivv~Tpg~l~~~l~~~--l~~~~~lVlDEah~~~ 189 (235)
T 3llm_A 133 RGEEPGKSCGYSVR---------------FESI------LPRPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHERD 189 (235)
T ss_dssp TTCCTTSSEEEEET---------------TEEE------CCCSSSEEEEEEHHHHHHHHHHC--CTTCCEEEECCTTSCC
T ss_pred hccccCceEEEeec---------------hhhc------cCCCCCeEEEECHHHHHHHHHhh--hcCCcEEEEECCccCC
Confidence 32211011111000 0000 00135789999985443333222 357899999999764
Q ss_pred ChHhHH
Q 006311 579 TEPETM 584 (651)
Q Consensus 579 tEpE~L 584 (651)
...+.+
T Consensus 190 ~~~~~~ 195 (235)
T 3llm_A 190 INTDFL 195 (235)
T ss_dssp HHHHHH
T ss_pred cchHHH
Confidence 444433
No 51
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.42 E-value=6.3e-07 Score=98.29 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 421 NYKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
...|.+.|++||..+... ....-.+|.-+.|+||| .+.+.++.++....+..++||++|+ +.+++..+.+.+.
T Consensus 35 ~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT-----~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 35 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKT-----LQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHH-----HHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHH-----HHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 357999999999877532 12335678889999999 8877777777766566899999995 5778888888765
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
.+...+..+... . ....+..++||++|......... +....|++||||||..+.
T Consensus 109 ~~~~~v~~~~g~--------------------~----~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~k 162 (500)
T 1z63_A 109 APHLRFAVFHED--------------------R----SKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIK 162 (500)
T ss_dssp CTTSCEEECSSS--------------------T----TSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGS
T ss_pred CCCceEEEEecC--------------------c----hhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccC
Confidence 443222211110 0 01124578899999987754332 334479999999998876
Q ss_pred hHh--HHHHHhccccCCCeEEEEeCCCCC
Q 006311 580 EPE--TMIVLGNLANENTRVIVTGAPHNS 606 (651)
Q Consensus 580 EpE--~LIpL~~la~~~~rvVLaGD~~QL 606 (651)
.+. ..-.+..+ ....++.|.|=|.|-
T Consensus 163 n~~~~~~~~l~~l-~~~~~l~LTaTP~~n 190 (500)
T 1z63_A 163 NPQTKIFKAVKEL-KSKYRIALTGTPIEN 190 (500)
T ss_dssp CTTSHHHHHHHTS-CEEEEEEECSSCSTT
T ss_pred CHhHHHHHHHHhh-ccCcEEEEecCCCCC
Confidence 553 22333322 223589999998774
No 52
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.42 E-value=1.8e-07 Score=106.85 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCC----CeEEEEccChhhHHHH-HHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK----SRILICAPWNRTCDKL-MECL 496 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~----~rILVcApSNsAaD~l-~~rL 496 (651)
..|.+.|.+|+..++. ..-++|.+|.|+||| .+....+++.+...+. .++||++|+.+.+.+. .+++
T Consensus 6 ~~l~~~Q~~~i~~il~---g~~~ll~~~TGsGKT-----l~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l 77 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE---GKNIIICLPTGCGKT-----RVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 77 (699)
T ss_dssp -CCCHHHHHHHHHHHS---SCCEEECCCTTSCHH-----HHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTH
T ss_pred CCccHHHHHHHHHHHh---CCCEEEEcCCCCcHH-----HHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 4689999999999998 345899999999999 7777777766654323 7999999999999988 8888
Q ss_pred HhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhh-------hcCCCCCCccE
Q 006311 497 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-------NQGITAGHFSH 569 (651)
Q Consensus 497 ~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~-------~~~~~~~~F~~ 569 (651)
.+..+.. +++...... .............++|+++|........ ...+....|++
T Consensus 78 ~~~~~~~--~~v~~~~g~----------------~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~l 139 (699)
T 4gl2_A 78 QPFLKKW--YRVIGLSGD----------------TQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSL 139 (699)
T ss_dssp HHHHTTT--SCEEEEC--------------------CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSE
T ss_pred HHHcCcC--ceEEEEeCC----------------cchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcE
Confidence 7643321 222111000 0000001122367899999998776433 12234557999
Q ss_pred EEEecCCCCC
Q 006311 570 IFLIDASSAT 579 (651)
Q Consensus 570 IiIDEAsQat 579 (651)
||||||-.+.
T Consensus 140 vViDEaH~~~ 149 (699)
T 4gl2_A 140 IIIDECHHTN 149 (699)
T ss_dssp EEEESGGGCB
T ss_pred EEEECccccC
Confidence 9999998653
No 53
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.42 E-value=6.3e-07 Score=104.72 Aligned_cols=134 Identities=10% Similarity=0.034 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC---CCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~---~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..+.+.|.+|+..++.+ .-.+|.+|.|+||| .+....+.+.+...+ +.++||++||...+.+..+++.+
T Consensus 247 ~~l~~~Q~~~i~~~l~~---~~~ll~~~TGsGKT-----l~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 247 KKARSYQIELAQPAING---KNALICAPTGSGKT-----FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -CCCHHHHHHHHHHHTT---CCEEEECCTTSCHH-----HHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhC---CCEEEEeCCCChHH-----HHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 57899999999999873 46899999999999 887777877777655 78999999999999999888876
Q ss_pred hCC--CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-C-CCCCccEEEEec
Q 006311 499 DIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-I-TAGHFSHIFLID 574 (651)
Q Consensus 499 ~l~--~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~-~~~~F~~IiIDE 574 (651)
..+ +..+..+.... ............++|||+|..........+ + ...++++|||||
T Consensus 319 ~~~~~~~~v~~~~g~~-------------------~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 379 (797)
T 4a2q_A 319 HFERQGYSVQGISGEN-------------------FSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (797)
T ss_dssp HHGGGTCCEEEECCC------------------------CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETT
T ss_pred hcccCCceEEEEeCCc-------------------chhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEEC
Confidence 322 11111111110 000001123357899999998765544332 2 344689999999
Q ss_pred CCCCChHh
Q 006311 575 ASSATEPE 582 (651)
Q Consensus 575 AsQatEpE 582 (651)
|-.+....
T Consensus 380 aH~~~~~~ 387 (797)
T 4a2q_A 380 CHNTTGNH 387 (797)
T ss_dssp GGGCSTTS
T ss_pred ccccCCCc
Confidence 98877653
No 54
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.39 E-value=5.1e-07 Score=103.93 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..||+.|.+|+..++.. ..-++|.||+|+||| .....++++.+.. .+.+|++++|+.+.|....+++.. +.
T Consensus 29 ~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT-----~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~-~~ 99 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLE--GNRLLLTSPTGSGKT-----LIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKD-WE 99 (715)
T ss_dssp CBCCHHHHHHHHTTTTT--TCCEEEECCTTSCHH-----HHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGG-GG
T ss_pred CCCCHHHHHHHHHHhcC--CCcEEEEcCCCCcHH-----HHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHH-hh
Confidence 47899999999984431 567999999999999 6666666665553 378999999999999999998832 11
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCC-CCCccEEEEecCCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGIT-AGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~-~~~F~~IiIDEAsQat 579 (651)
.. =++++.. .++.- ...+.+.+++|+++|......+...+.. ...+++||||||....
T Consensus 100 ~~-g~~v~~~-----------------~G~~~--~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 100 LI-GFKVAMT-----------------SGDYD--TDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp GG-TCCEEEC-----------------CSCSS--SCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred cC-CCEEEEE-----------------eCCCC--CchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 10 0111110 01000 0112345789999999766554433221 3468999999997643
No 55
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.35 E-value=7.7e-07 Score=96.59 Aligned_cols=134 Identities=12% Similarity=0.021 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC------CCCeEEEEccChhhHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS------PKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~------~~~rILVcApSNsAaD~l~~r 495 (651)
..+++.|++|+..+++ ..-+++.+|.||||| ....-.+++.+... .+.++||++||...|.++.+.
T Consensus 77 ~~pt~iQ~~ai~~i~~---g~d~i~~a~TGsGKT-----~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 148 (434)
T 2db3_A 77 KIPTPIQKCSIPVISS---GRDLMACAQTGSGKT-----AAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNE 148 (434)
T ss_dssp CSCCHHHHHHHHHHHT---TCCEEEECCTTSSHH-----HHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEECCCCCCch-----HHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHH
Confidence 3689999999999987 356899999999999 65444444433322 255899999999999999988
Q ss_pred HHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCCCCCccEEEEec
Q 006311 496 LMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLID 574 (651)
Q Consensus 496 L~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~~IiIDE 574 (651)
+.+..... -+++.... ......-. .......++|+|+|......+... .+...++++|||||
T Consensus 149 ~~~~~~~~-~~~~~~~~---gg~~~~~~-------------~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 149 ARKFAFES-YLKIGIVY---GGTSFRHQ-------------NECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp HHHHTTTS-SCCCCEEC---TTSCHHHH-------------HHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred HHHHhccC-CcEEEEEE---CCCCHHHH-------------HHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 87632211 11211100 00000000 001124678999998866544432 23456789999999
Q ss_pred CCCCCh
Q 006311 575 ASSATE 580 (651)
Q Consensus 575 AsQatE 580 (651)
|-.+.+
T Consensus 212 ah~~~~ 217 (434)
T 2db3_A 212 ADRMLD 217 (434)
T ss_dssp HHHHTS
T ss_pred Hhhhhc
Confidence 977553
No 56
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.30 E-value=8.4e-07 Score=102.08 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..||+.|.+|+..++. ..-++|.||+|+||| .....++++.+.. +.++++++|+.+.|....+++.. +.
T Consensus 24 ~~l~~~Q~~~i~~i~~---~~~~lv~apTGsGKT-----~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~~-~~ 92 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFS---GKNLLLAMPTAAGKT-----LLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFKK-WE 92 (702)
T ss_dssp -CCCCCCHHHHHHHTT---CSCEEEECSSHHHHH-----HHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHTT-TT
T ss_pred CCCCHHHHHHHHHHhC---CCcEEEEcCCccHHH-----HHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHHH-HH
Confidence 3678889999999766 567899999999999 6665666665553 67999999999999999999832 21
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCC-CCCccEEEEecCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGIT-AGHFSHIFLIDASSA 578 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~-~~~F~~IiIDEAsQa 578 (651)
.. -++++.. .++.-. ..+.+.+++|+++|......+...+.. ...+++||||||-..
T Consensus 93 ~~-g~~v~~~-----------------~G~~~~--~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 93 KI-GLRIGIS-----------------TGDYES--RDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp TT-TCCEEEE-----------------CSSCBC--CSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGG
T ss_pred hc-CCEEEEE-----------------eCCCCc--chhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeec
Confidence 11 0111111 000000 011245789999998766554433221 236899999999763
No 57
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.28 E-value=2.7e-06 Score=102.12 Aligned_cols=123 Identities=7% Similarity=0.031 Sum_probs=85.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|++|+..++. ..-++|.||.|+||| .+...++.+.+.. +.++||++|+.+.+....+++.+.+.
T Consensus 38 f~l~~~Q~~aI~~il~---g~~vlv~apTGsGKT-----lv~~~~i~~~~~~--g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQ---GDSVFVAAHTSAGKT-----VVAEYAIAMAHRN--MTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp SCCCHHHHHHHHHHHT---TCEEEEECCTTSCSH-----HHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHc---CCCEEEEECCCCcHH-----HHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 5689999999999987 457899999999999 7655666665553 78999999999999999999987443
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhc-CCCCCCccEEEEecCCCCCh
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~-~~~~~~F~~IiIDEAsQatE 580 (651)
+..+.-+... .. .-.+++|+++|.......... ......+++||||||-...+
T Consensus 108 ~~~v~~l~G~-------------------~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d 161 (997)
T 4a4z_A 108 DVNIGLITGD-------------------VQ-------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND 161 (997)
T ss_dssp -CCEEEECSS-------------------CE-------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT
T ss_pred CCeEEEEeCC-------------------Cc-------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc
Confidence 2211111110 00 013478999998755433322 22234689999999987654
No 58
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.1e-06 Score=104.19 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|++|+..++. ..-++|.||.|+||| .+...++++.+.. +.++|+++|+...+.+..+++...+.
T Consensus 183 f~ltp~Q~~AI~~i~~---g~dvLV~ApTGSGKT-----lva~l~i~~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR---GESVLVSAHTSAGKT-----VVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp SCCCHHHHHHHHHHTT---TCCEEEECCSSSHHH-----HHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHc---CCCEEEECCCCCChH-----HHHHHHHHHHHhc--CCeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 5799999999999876 457899999999999 7766777776664 78999999999999999999987443
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-CCCCCccEEEEecCCCCCh
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~~~~~F~~IiIDEAsQatE 580 (651)
. ++.. .++.- .-.+++|+|+|..........+ .....+++||||||-.+.+
T Consensus 253 ~-----Vgll-----------------tGd~~------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 253 D-----VGLM-----------------TGDIT------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp S-----EEEE-----------------CSSCB------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred C-----ccEE-----------------eCccc------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 1 1110 00000 1145789999987554433222 2123589999999988766
Q ss_pred Hh
Q 006311 581 PE 582 (651)
Q Consensus 581 pE 582 (651)
.+
T Consensus 305 ~~ 306 (1108)
T 3l9o_A 305 KE 306 (1108)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 59
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.27 E-value=1.2e-06 Score=104.36 Aligned_cols=134 Identities=10% Similarity=0.034 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC---CCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~---~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..+.+.|.+|+..++.+ .-.+|.+|.|+||| .+.+..+++.+...+ +.++||++||...+.+..+++..
T Consensus 247 ~~~r~~Q~~ai~~il~g---~~~ll~a~TGsGKT-----l~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 247 KKARSYQIELAQPAING---KNALICAPTGSGKT-----FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -CCCHHHHHHHHHHHTT---CCEEEECCTTSCHH-----HHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC---CCEEEEeCCCchHH-----HHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 57899999999999873 45899999999999 777777776666544 77999999999999999888876
Q ss_pred hCC--CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcC-C-CCCCccEEEEec
Q 006311 499 DIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-I-TAGHFSHIFLID 574 (651)
Q Consensus 499 ~l~--~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~-~-~~~~F~~IiIDE 574 (651)
..+ +..+..+.... ............++|+|+|..........+ + ...+|++|||||
T Consensus 319 ~~~~~~~~v~~~~G~~-------------------~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDE 379 (936)
T 4a2w_A 319 HFERQGYSVQGISGEN-------------------FSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (936)
T ss_dssp HHHTTTCCEEEECCC------------------------CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEET
T ss_pred HhcccCceEEEEECCc-------------------chhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEEC
Confidence 322 11211111110 000001123356899999998776544332 2 344689999999
Q ss_pred CCCCChHh
Q 006311 575 ASSATEPE 582 (651)
Q Consensus 575 AsQatEpE 582 (651)
|-.+....
T Consensus 380 aH~~~~~~ 387 (936)
T 4a2w_A 380 CHNTTGNH 387 (936)
T ss_dssp GGGCSTTC
T ss_pred ccccCCCc
Confidence 98777653
No 60
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.27 E-value=1.4e-06 Score=96.94 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC-----CCeEEEEccChhhHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-----KSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~-----~~rILVcApSNsAaD~l~~rL 496 (651)
..+++.|.+|+..++... ..-+++.+|.||||| .+..-.+++.+.... +.++||++||...|.++.+++
T Consensus 93 ~~~~~~Q~~~i~~~l~~~-~~~~lv~apTGsGKT-----l~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~ 166 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSE-DHDVIARAKTGTGKT-----FAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 166 (563)
T ss_dssp SSCCHHHHHHHHHHHSSS-SEEEEEECCTTSCHH-----HHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCC-CCeEEEECCCCCCcc-----HHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHH
Confidence 468999999999999421 346899999999999 665555555554322 348999999999999999888
Q ss_pred HhhCC---CcchhhhccccccccCCcHHHHHhhhccccccCCChhhh--hcccceEeeehhcchhhhhc--CCCCCCccE
Q 006311 497 MKDIP---ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEE--LRQYKVISSTFVSSFRLHNQ--GITAGHFSH 569 (651)
Q Consensus 497 ~~~l~---~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~--L~~~rIVvtT~ssa~~l~~~--~~~~~~F~~ 569 (651)
..... +...+++... ....... . .... -..++|+|+|.......... ......+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~---~g~~~~~-~-------------~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 229 (563)
T 3i5x_A 167 KKIHDMNYGLKKYACVSL---VGGTDFR-A-------------AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 229 (563)
T ss_dssp HHHHHHCGGGTTSCEEEE---CTTSCHH-H-------------HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHhhccccCceeEEEE---ECCcCHH-H-------------HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceE
Confidence 76211 1111111100 0000000 0 0011 13578999998866432211 112346899
Q ss_pred EEEecCCCCC
Q 006311 570 IFLIDASSAT 579 (651)
Q Consensus 570 IiIDEAsQat 579 (651)
||||||-.+.
T Consensus 230 lViDEah~l~ 239 (563)
T 3i5x_A 230 KVLDEADRLL 239 (563)
T ss_dssp EEEETHHHHT
T ss_pred EEEeCHHHHh
Confidence 9999997654
No 61
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.26 E-value=2.9e-06 Score=99.41 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHhc---cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 423 KLDSDSNSAVHQILSF---EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~---~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
.|++.|++|+..|+.. ..+.-.+|+||.|+||| .+...++++.+.. +.++++++||...|.+..+++.+.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKT-----lvall~il~~l~~--g~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKT-----VVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHH-----HHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHH
Confidence 7999999999999874 12346799999999999 8777777777765 789999999999999999998764
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCCC
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 577 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ 577 (651)
+.... +++..... .....-+. . ..+.+ .+++|||+|.... ...+....+++||||||-.
T Consensus 441 ~~~~g-i~v~~l~G---~~~~~~r~-~----------~~~~l~~g~~~IvVgT~~ll----~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 441 FSKFN-IHVALLIG---ATTPSEKE-K----------IKSGLRNGQIDVVIGTHALI----QEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HTCSS-CCEEECCS---SSCHHHHH-H----------HHHHHHSSCCCEEEECTTHH----HHCCCCSCCCEEEEESCCC
T ss_pred hhhcC-ceEEEEeC---CCCHHHHH-H----------HHHHHhcCCCCEEEECHHHH----hhhhhccCCceEEecccch
Confidence 32211 12211100 11111000 0 00111 3478999997533 2234556789999999976
Q ss_pred C
Q 006311 578 A 578 (651)
Q Consensus 578 a 578 (651)
.
T Consensus 502 ~ 502 (780)
T 1gm5_A 502 F 502 (780)
T ss_dssp C
T ss_pred h
Confidence 4
No 62
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.25 E-value=1.6e-06 Score=97.42 Aligned_cols=135 Identities=11% Similarity=0.031 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC-----CCeEEEEccChhhHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-----KSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~-----~~rILVcApSNsAaD~l~~rL 496 (651)
..+++.|++|+..++... ..-+++.+|.||||| .+..-.+++.+.... +.++||++||...|.++.+++
T Consensus 42 ~~~~~~Q~~~i~~il~~~-~~dvlv~apTGsGKT-----l~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~ 115 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSE-DHDVIARAKTGTGKT-----FAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 115 (579)
T ss_dssp SSCCHHHHHHHHHHHCSS-SEEEEEECCTTSCHH-----HHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccC-CCeEEEEcCCCcHHH-----HHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHH
Confidence 468999999999999421 346899999999999 665555555554322 358999999999999999888
Q ss_pred HhhCC---CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhc--CCCCCCccE
Q 006311 497 MKDIP---ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQ--GITAGHFSH 569 (651)
Q Consensus 497 ~~~l~---~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~--~~~~~~F~~ 569 (651)
.+... +...+++... ..+..+. .....+ ...+|+|+|.......... ......+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~----------------~gg~~~~-~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~ 178 (579)
T 3sqw_A 116 KKIHDMNYGLKKYACVSL----------------VGGTDFR-AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 178 (579)
T ss_dssp HHHHHHCGGGTTSCEEEE----------------CTTSCHH-HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHhhcccccceEEEEE----------------ECCccHH-HHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCE
Confidence 76211 1111111100 0000000 001111 3578999998765432211 112346899
Q ss_pred EEEecCCCCC
Q 006311 570 IFLIDASSAT 579 (651)
Q Consensus 570 IiIDEAsQat 579 (651)
||||||-.+.
T Consensus 179 lViDEah~l~ 188 (579)
T 3sqw_A 179 KVLDEADRLL 188 (579)
T ss_dssp EEEETHHHHT
T ss_pred EEEEChHHhh
Confidence 9999997654
No 63
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.23 E-value=2.2e-06 Score=98.97 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHH-HHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhC
Q 006311 422 YKLDSDSNSAVHQ-ILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 500 (651)
Q Consensus 422 ~~LN~~Q~~AV~~-iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l 500 (651)
..|++.|.+|+.. ++. ..-++|.||.|+||| .+..-++++.+.. .+.++++++|+.++|....+++.. +
T Consensus 22 ~~l~~~Q~~~i~~~~~~---~~~~lv~apTGsGKT-----~~~~l~il~~~~~-~~~~~l~i~P~raLa~q~~~~~~~-l 91 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILE---GKNALISIPTASGKT-----LIAEIAMVHRILT-QGGKAVYIVPLKALAEEKFQEFQD-W 91 (720)
T ss_dssp CBCCHHHHHHHTTTGGG---TCEEEEECCGGGCHH-----HHHHHHHHHHHHH-HCSEEEEECSSGGGHHHHHHHTGG-G
T ss_pred CCCCHHHHHHHHHHhcC---CCcEEEEcCCccHHH-----HHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHHHHH-H
Confidence 4789999999998 444 467999999999999 6654555544432 278999999999999999999842 1
Q ss_pred CCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCC-CCCccEEEEecCCCC
Q 006311 501 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGIT-AGHFSHIFLIDASSA 578 (651)
Q Consensus 501 ~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~-~~~F~~IiIDEAsQa 578 (651)
... -++++.. .++. . .....+.+++|+++|......+...+.. ...+++||||||-..
T Consensus 92 ~~~-g~~v~~~-----------------~G~~-~-~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 92 EKI-GLRVAMA-----------------TGDY-D-SKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp GGG-TCCEEEE-----------------CSCS-S-CCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred Hhc-CCEEEEe-----------------cCCC-C-ccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 110 0111111 0000 0 0112346789999999876554433221 346899999999754
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.17 E-value=3.8e-06 Score=100.55 Aligned_cols=160 Identities=10% Similarity=0.059 Sum_probs=104.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|.+.|.+|+..++... ..-.+|.++.|+||| .+.+.++.+++...+..++||++|+ +.+++-...+.+.+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~-~~~~LLad~tGlGKT-----i~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~ 224 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRH-APRVLLADEVGLGKT-----IEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFN 224 (968)
T ss_dssp SCCCHHHHHHHHHHHHSS-SCEEEECCCTTSCHH-----HHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSC
T ss_pred CCCcHHHHHHHHHHHHhc-CCCEEEECCCCCcHH-----HHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhC
Confidence 578999999999988732 345799999999999 8888888888776566799999999 888888888866441
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhh--cCCCCCCccEEEEecCCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN--QGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~--~~~~~~~F~~IiIDEAsQat 579 (651)
..+.-+.. .+. .. ..... ......++||++|......... ..+....|++||||||....
T Consensus 225 -l~v~v~~~-~~~--------~~-~~~~~-------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~k 286 (968)
T 3dmq_A 225 -LRFALFDD-ERY--------AE-AQHDA-------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLV 286 (968)
T ss_dssp -CCCEECCH-HHH--------HH-HHHTT-------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCC
T ss_pred -CCEEEEcc-chh--------hh-hhhhc-------ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhc
Confidence 11111111 010 00 00000 1223567899999886643110 11234479999999998886
Q ss_pred hHh--------HHHHHhccccCCCeEEEEeCCCCCCc
Q 006311 580 EPE--------TMIVLGNLANENTRVIVTGAPHNSPS 608 (651)
Q Consensus 580 EpE--------~LIpL~~la~~~~rvVLaGD~~QL~P 608 (651)
... .+..+.. ....++.|.|=|.|..+
T Consensus 287 n~~~~~s~~~~~l~~L~~--~~~~~L~LTATPi~n~~ 321 (968)
T 3dmq_A 287 WSEDAPSREYQAIEQLAE--HVPGVLLLTATPEQLGM 321 (968)
T ss_dssp CBTTBCCHHHHHHHHHHT--TCSSEEESCSSCSSSCS
T ss_pred CCCCcchHHHHHHHHHhh--cCCcEEEEEcCCccCCH
Confidence 432 3333321 22348999999987544
No 65
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.17 E-value=7.2e-06 Score=99.85 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHhc---cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSF---EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~---~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..+++.|++|+..++.. ..+.-.+|+||.|+||| .+...++...+. .+.++||++||...|.+..+++.+
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT-----~val~aa~~~~~--~g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT-----EVAMRAAFLAVD--NHKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTH-----HHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHH-----HHHHHHHHHHHH--hCCeEEEEechHHHHHHHHHHHHH
Confidence 45799999999999873 12236899999999999 766656655554 377999999999999999999887
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 576 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs 576 (651)
.+.+.. +++....+. ....-.. . ..+.+ ...+|||+|.... ...+....+++||||||.
T Consensus 675 ~~~~~~-i~v~~l~~~---~~~~~~~-~----------~~~~l~~g~~dIvV~T~~ll----~~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 675 RFANWP-VRIEMISRF---RSAKEQT-Q----------ILAEVAEGKIDILIGTHKLL----QSDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp HSTTTT-CCEEEESTT---SCHHHHH-H----------HHHHHHTTCCSEEEECTHHH----HSCCCCSSEEEEEEESGG
T ss_pred HhhcCC-CeEEEEeCC---CCHHHHH-H----------HHHHHhcCCCCEEEECHHHH----hCCccccccceEEEechH
Confidence 543221 222221111 0000000 0 00111 3578999997533 233555679999999997
Q ss_pred CCC
Q 006311 577 SAT 579 (651)
Q Consensus 577 Qat 579 (651)
...
T Consensus 736 ~~g 738 (1151)
T 2eyq_A 736 RFG 738 (1151)
T ss_dssp GSC
T ss_pred hcC
Confidence 643
No 66
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.16 E-value=6.4e-06 Score=99.90 Aligned_cols=127 Identities=11% Similarity=0.134 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 502 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~ 502 (651)
.+++.|++|+..++. ..-+++++|.||||| ....-++.+.+. .+.++||.+||...|.++.+++.+ +.
T Consensus 78 ~pt~iQ~~ai~~il~---g~dvlv~ApTGSGKT-----l~~l~~il~~~~--~~~~~Lil~PtreLa~Q~~~~l~~-l~- 145 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ---GKSFTMVAPTGVGKT-----TFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQK-LA- 145 (1104)
T ss_dssp CCCHHHHHHHHHHTT---TCCEEECCSTTCCHH-----HHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHT-TS-
T ss_pred CCCHHHHHHHHHHHc---CCCEEEEeCCCCcHH-----HHHHHHHHHHHh--cCCeEEEEechHHHHHHHHHHHHH-hh-
Confidence 578999999999987 346899999999999 655555555553 478999999999999999999986 22
Q ss_pred cchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcCCCCCCccEEEEecCC
Q 006311 503 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 576 (651)
Q Consensus 503 ~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAs 576 (651)
..-+++....... ...+.-. ..+.+ ..++|+|+|......+... +...++++||||||-
T Consensus 146 ~~~i~v~~l~Gg~-~~~er~~-------------~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 146 DEKVKIFGFYSSM-KKEEKEK-------------FEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVD 206 (1104)
T ss_dssp CTTSCEEEECTTC-CTTHHHH-------------HHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHH
T ss_pred CCCCeEEEEeCCC-CHHHHHH-------------HHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCC
Confidence 1112222111100 0000000 01122 2378999998766443322 344579999999993
No 67
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.14 E-value=4.3e-06 Score=100.53 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|++|+..++. ..-++|.+|.|+||| .+..-++.+.+.. +.++|+++|+.+.+.+..+++...+.
T Consensus 85 f~L~~~Q~eai~~l~~---g~~vLV~apTGSGKT-----lva~lai~~~l~~--g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDR---GESVLVSAHTSAGKT-----VVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SCCCHHHHHHHHHHHH---TCEEEEECCTTSCHH-----HHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHc---CCCEEEECCCCCChH-----HHHHHHHHHHhcc--CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 4699999999999887 346899999999999 6655566666654 78999999999999999998876332
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhh-hcCCCCCCccEEEEecCCCCCh
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~-~~~~~~~~F~~IiIDEAsQatE 580 (651)
+++.. .++.- .-.+++|+|+|........ ........+++||||||-.+.+
T Consensus 155 -----~vgll-----------------tGd~~------~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d 206 (1010)
T 2xgj_A 155 -----DVGLM-----------------TGDIT------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 206 (1010)
T ss_dssp -----CEEEE-----------------CSSCE------ECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC
T ss_pred -----CEEEE-----------------eCCCc------cCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc
Confidence 11110 01100 0025789999987554332 2223334689999999976543
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.14 E-value=6.3e-06 Score=94.34 Aligned_cols=167 Identities=8% Similarity=0.147 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHhc------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC-----CCeEEEEccChhhHH
Q 006311 422 YKLDSDSNSAVHQILSF------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-----KSRILICAPWNRTCD 490 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~-----~~rILVcApSNsAaD 490 (651)
..|-+.|++||..+... .+..-.++.-+.|+||| .+.+.++..+++..+ ..++||++|+ +.+.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT-----~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKT-----LQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHH-----HHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHH-----HHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHH
Confidence 47899999999988743 12234688889999999 888888888877542 3579999997 6677
Q ss_pred HHHHHHHhhCCC-cchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccE
Q 006311 491 KLMECLMKDIPA-SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSH 569 (651)
Q Consensus 491 ~l~~rL~~~l~~-~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~ 569 (651)
+-.+.+.+..+. ..++.+....+. .....+..+.... . ....+.|+++|..+..... ..+....|++
T Consensus 128 qW~~E~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~--~-------~~~~~~vvi~ty~~l~~~~-~~l~~~~~~~ 195 (644)
T 1z3i_X 128 NWYNEVGKWLGGRVQPVAIDGGSKD--EIDSKLVNFISQQ--G-------MRIPTPILIISYETFRLHA-EVLHKGKVGL 195 (644)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCHH--HHHHHHHHHHCCC--S-------SCCSCCEEEEEHHHHHHHT-TTTTTSCCCE
T ss_pred HHHHHHHHHcCCCeeEEEEeCCCHH--HHHHHHHHHHHhc--C-------CCCCCcEEEeeHHHHHhhH-HHhhcCCccE
Confidence 777777653322 111111111100 0111111111100 0 0124689999998775433 2355668999
Q ss_pred EEEecCCCCChHhH--HHHHhccccCCCeEEEEeCCCCCC
Q 006311 570 IFLIDASSATEPET--MIVLGNLANENTRVIVTGAPHNSP 607 (651)
Q Consensus 570 IiIDEAsQatEpE~--LIpL~~la~~~~rvVLaGD~~QL~ 607 (651)
||+|||.....+.+ ...+..+ ....+++|.|=|.|-.
T Consensus 196 vI~DEaH~ikn~~~~~~~al~~l-~~~~rl~LTgTPiqN~ 234 (644)
T 1z3i_X 196 VICDEGHRLKNSDNQTYLALNSM-NAQRRVLISGTPIQND 234 (644)
T ss_dssp EEETTGGGCCTTCHHHHHHHHHH-CCSEEEEECSSCSGGG
T ss_pred EEEECceecCChhhHHHHHHHhc-ccCcEEEEecCcccCC
Confidence 99999998755433 2333322 2345899999998854
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.09 E-value=1.4e-05 Score=93.56 Aligned_cols=173 Identities=10% Similarity=0.093 Sum_probs=107.1
Q ss_pred CCCCCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH-hCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 421 NYKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~-~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..|-+.|++||..++.. ....-.+|.-+.|+||| .+.+.++..++. .....++||++| .+.+.+-.+.+.+
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT-----~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKT-----VQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTT-----HHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchH-----HHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHH
Confidence 468999999999877632 22445689999999999 887777766653 334678999999 6667888888877
Q ss_pred hCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCC
Q 006311 499 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 578 (651)
Q Consensus 499 ~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQa 578 (651)
..+...++.+....+. ...+..+....... ........+.|+++|..++...... +....|++||||||.++
T Consensus 308 ~~p~~~v~~~~g~~~~----r~~~~~~~~~~~~~---~~~~~~~~~dvvitTy~~l~~~~~~-l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 308 WAPDLNCICYMGNQKS----RDTIREYEFYTNPR---AKGKKTMKFNVLLTTYEYILKDRAE-LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HSTTCCEEECCCSSHH----HHHHHHHHSCSCC--------CCCCCSEEEECTTHHHHTHHH-HHTSEEEEEEETTGGGG
T ss_pred HCCCceEEEEeCCHHH----HHHHHHHHhhcccc---ccccccccCCEEEecHHHHHhhHHH-HhcCCcceeehhhhhhh
Confidence 5555444433322111 11122222111000 0012335788999999977543221 23346999999999887
Q ss_pred ChH--hHHHHHhccccCCCeEEEEeCCCCCCc
Q 006311 579 TEP--ETMIVLGNLANENTRVIVTGAPHNSPS 608 (651)
Q Consensus 579 tEp--E~LIpL~~la~~~~rvVLaGD~~QL~P 608 (651)
..+ ...-.+..+ ....+++|.|=|.|-.+
T Consensus 380 kn~~s~~~~~l~~l-~~~~rl~LTgTPiqN~l 410 (800)
T 3mwy_W 380 KNAESSLYESLNSF-KVANRMLITGTPLQNNI 410 (800)
T ss_dssp CCSSSHHHHHHTTS-EEEEEEEECSCCCSSCS
T ss_pred cCchhHHHHHHHHh-hhccEEEeeCCcCCCCH
Confidence 433 333333322 23458999999977543
No 70
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=98.00 E-value=4.8e-06 Score=102.01 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=58.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC----CCCeEEEEccChhhHHHHHHHH
Q 006311 421 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----PKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~----~~~rILVcApSNsAaD~l~~rL 496 (651)
+..||++|++||.. ....++|.|+|||||| +||++.|.+++... +..+||++|+||.||+.+.+|+
T Consensus 8 ~~~~t~eQ~~~i~~-----~~~~~~v~a~AGSGKT-----~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri 77 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS-----TGQDILVAAAAGSGKT-----AVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRI 77 (1232)
T ss_dssp --CCCHHHHHHHHC-----CSSCEEEEECTTCCHH-----HHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhC-----CCCCEEEEecCCCcHH-----HHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHH
Confidence 35799999999975 2458999999999999 99999999888752 3469999999999999999999
Q ss_pred Hh
Q 006311 497 MK 498 (651)
Q Consensus 497 ~~ 498 (651)
.+
T Consensus 78 ~~ 79 (1232)
T 3u4q_A 78 AE 79 (1232)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 71
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=97.94 E-value=1.8e-05 Score=77.20 Aligned_cols=128 Identities=14% Similarity=0.091 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcc
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASE 504 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~ 504 (651)
+..|..|+..++.. +++..+|.|+-||+|| .+.++.+..+.+. .+.+|.+.||+.+++..+.+... +.+..
T Consensus 36 ~~~~~~a~~~l~~s-~~~~~iv~g~ggs~~~-----~~~~a~L~~~a~~-~Gr~V~vLAp~~~s~~~l~~~~~--l~~~t 106 (189)
T 2l8b_A 36 TAGYSDAVSVLAQD-RPSLAIVSGQGGAAGQ-----RERVAELVMMARE-QGREVQIIAADRRSQMNMKQDER--LSGEL 106 (189)
T ss_dssp HHHHHHHHHHHHHH-SCCEECCBCSSCSHHH-----HHHHHHHHHHHHH-TTCCEEEECSTTHHHHHHSCTTT--CSSCS
T ss_pred CccchhHHHHHhcc-CCceEEEecccchHHH-----HHHHHHHHHHHHh-cCeEEEEEcCchHHHHHHHhhcC--cCcce
Confidence 47799999998863 4678899999999999 8877777666665 68999999999999988776642 11211
Q ss_pred hhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHH
Q 006311 505 MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETM 584 (651)
Q Consensus 505 i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~L 584 (651)
+.| ..+...+.+...=+.+|||||.+.+-=|.+
T Consensus 107 ~t~-----------------------------------------------~~ll~~~~~~tp~s~lIVD~AekLS~kE~~ 139 (189)
T 2l8b_A 107 ITG-----------------------------------------------RRQLLEGMAFTPGSTVIVDQGEKLSLKETL 139 (189)
T ss_dssp SST-----------------------------------------------TTTTTTSCCCCCCCEEEEEESSSHHHHHHH
T ss_pred eeh-----------------------------------------------hhhhcCCCCCCCCCEEEEechhhcCHHHHH
Confidence 100 000011111112348999999999888877
Q ss_pred HHHhccccCCCeEEEEeCCCCCCc
Q 006311 585 IVLGNLANENTRVIVTGAPHNSPS 608 (651)
Q Consensus 585 IpL~~la~~~~rvVLaGD~~QL~P 608 (651)
.-+......+.|+||+||..|+|-
T Consensus 140 ~Lld~A~~~naqvvll~~~~RqG~ 163 (189)
T 2l8b_A 140 TLLDGAARHNVQVLITDSGQRTGT 163 (189)
T ss_dssp HHHHHHHHTTCCEEEEESSTTTCS
T ss_pred HHHHHHHhcCCEEEEeCCcccccC
Confidence 666644456789999999999986
No 72
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.92 E-value=2.3e-05 Score=94.67 Aligned_cols=128 Identities=14% Similarity=0.108 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCc
Q 006311 424 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS 503 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~ 503 (651)
+ +.|.+|+..++. ..-+++.||.||||| ....-++..+.. .+.++|+++||...|.++.+++.......
T Consensus 58 p-~iQ~~ai~~il~---g~dvlv~apTGSGKT-----l~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 58 R-AIQKMWAKRILR---KESFAATAPTGVGKT-----SFGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp C-HHHHHHHHHHHT---TCCEECCCCBTSCSH-----HHHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred H-HHHHHHHHHHHh---CCCEEEEcCCCCCHH-----HHHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 6 999999999997 356899999999999 644444444433 47899999999999999999887632221
Q ss_pred ch---hhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCC
Q 006311 504 EM---FRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 504 ~i---~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQat 579 (651)
.+ .++....- ..+..-.. ...+.+.+.+|+|+|.......... -..+++||||||-.+.
T Consensus 127 ~i~~~~~v~~~~G---g~~~~~~~-----------~~~~~l~~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 127 GVGTENLIGYYHG---RIPKREKE-----------NFMQNLRNFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp CCSGGGSEEECCS---SCCSHHHH-----------HHHHSGGGCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHH
T ss_pred CCCccceEEEEeC---CCChhhHH-----------HHHhhccCCCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhh
Confidence 11 12211100 00000000 0012334489999998766543322 2378999999996543
No 73
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.90 E-value=2.1e-05 Score=99.23 Aligned_cols=133 Identities=10% Similarity=0.017 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..+|+-|.+|+..++.. ..-++|.+|.|+||| ...--+|++.+...++.++++.+|+.+-|++..+.+.+.+.
T Consensus 925 ~~fnpiQ~q~~~~l~~~--~~nvlv~APTGSGKT-----liaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~ 997 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYNS--DDNVFVGAPTGSGKT-----ICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQ 997 (1724)
T ss_dssp SBCCHHHHHHHHHHHSC--CSCEEEECCTTSCCH-----HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC--CCcEEEEeCCCCCch-----HHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhc
Confidence 46899999999999873 456899999999999 55445566667666788999999999999999888876332
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCC---CCCccEEEEecCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGIT---AGHFSHIFLIDASSA 578 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~---~~~F~~IiIDEAsQa 578 (651)
+.--++++.... +.. +....+.+++|+|||......+...... -.+..+||||||-..
T Consensus 998 ~~~g~~V~~ltG---d~~----------------~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l 1058 (1724)
T 4f92_B 998 DRLNKKVVLLTG---ETS----------------TDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLI 1058 (1724)
T ss_dssp TTSCCCEEECCS---CHH----------------HHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGG
T ss_pred hhcCCEEEEEEC---CCC----------------cchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhc
Confidence 211122211100 000 1123456789999998765443322111 124789999999755
Q ss_pred Ch
Q 006311 579 TE 580 (651)
Q Consensus 579 tE 580 (651)
.+
T Consensus 1059 ~d 1060 (1724)
T 4f92_B 1059 GG 1060 (1724)
T ss_dssp GS
T ss_pred CC
Confidence 43
No 74
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.90 E-value=2.1e-05 Score=92.11 Aligned_cols=148 Identities=9% Similarity=0.033 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh-CCCCeEEEEccChhhHHHHHHHHHhhCCCc
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDIPAS 503 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~-~~~~rILVcApSNsAaD~l~~rL~~~l~~~ 503 (651)
...|++++..++.. ...++|.||+|+||| +.+..++...... ..+.+|++.+|+..+|..+.+++...+...
T Consensus 95 ~~~q~~~i~~~l~~--~~~vii~gpTGSGKT-----tllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~ 167 (773)
T 2xau_A 95 VHAQRDEFLKLYQN--NQIMVFVGETGSGKT-----TQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVK 167 (773)
T ss_dssp GGGGHHHHHHHHHH--CSEEEEECCTTSSHH-----HHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHhC--CCeEEEECCCCCCHH-----HHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCc
Confidence 34688888888762 457899999999999 5343333221111 125679999999999999999887643211
Q ss_pred chhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCC-CChHh
Q 006311 504 EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS-ATEPE 582 (651)
Q Consensus 504 ~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQ-atEpE 582 (651)
....++...+. ... .-...+|+++|.....+....+.....+++||||||.. ....+
T Consensus 168 v~~~vG~~i~~---------------~~~-------~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d 225 (773)
T 2xau_A 168 LGEEVGYSIRF---------------ENK-------TSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATD 225 (773)
T ss_dssp BTTTEEEEETT---------------EEE-------CCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHH
T ss_pred hhheecceecc---------------ccc-------cCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchH
Confidence 11111111010 000 01356899999776554333333445789999999974 55555
Q ss_pred HHHHHhcc---ccCCCeEEEEe
Q 006311 583 TMIVLGNL---ANENTRVIVTG 601 (651)
Q Consensus 583 ~LIpL~~l---a~~~~rvVLaG 601 (651)
.+..+... ..++.++|+.-
T Consensus 226 ~~~~~l~~l~~~~~~~~iIl~S 247 (773)
T 2xau_A 226 ILMGLLKQVVKRRPDLKIIIMS 247 (773)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHhCCCceEEEEe
Confidence 44433211 11345666664
No 75
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.90 E-value=3.2e-05 Score=88.90 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=69.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCCcchhhhccccccccCCcH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSD 520 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~ 520 (651)
..-.++.||.||||| ..+...++ + .+.++||++||...|.++.+++.+.+....-.+++..
T Consensus 232 ~~~vlv~ApTGSGKT-----~a~~l~ll---~--~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~--------- 292 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKS-----TKVPAAYA---A--QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVR--------- 292 (666)
T ss_dssp CEEEEEECCTTSCTT-----THHHHHHH---H--TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSC---------
T ss_pred CCeEEEEeCCchhHH-----HHHHHHHH---H--CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcE---------
Confidence 346799999999999 55444333 3 2669999999999999999988763221110111100
Q ss_pred HHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCChHhHHH
Q 006311 521 EIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMI 585 (651)
Q Consensus 521 ~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatEpE~LI 585 (651)
. .-.+.+|+++|.... +....+...++++|||||| |+.......
T Consensus 293 -----------~-------~~~~~~IlV~TPGrL--l~~~~l~l~~l~~lVlDEA-H~l~~~~~~ 336 (666)
T 3o8b_A 293 -----------T-------ITTGAPVTYSTYGKF--LADGGCSGGAYDIIICDEC-HSTDSTTIL 336 (666)
T ss_dssp -----------E-------ECCCCSEEEEEHHHH--HHTTSCCTTSCSEEEETTT-TCCSHHHHH
T ss_pred -----------e-------ccCCCCEEEECcHHH--HhCCCcccCcccEEEEccc-hhcCccHHH
Confidence 0 124578999997653 2223345557999999999 888777643
No 76
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.89 E-value=1.7e-05 Score=88.98 Aligned_cols=66 Identities=14% Similarity=0.066 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 423 KLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.+-+.|.+++..+... ......+++.|+||||| ....-.+++ . +.+|+|+|||..-++++.+.+..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT-----~~~l~p~l~---~--~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKT-----LFSLLVSLE---V--KPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHH-----HHHHHHHHH---H--CSEEEEEESSGGGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHH-----HHHHHHHHh---C--CCeEEEEcCCHHHHHHHHHHHHH
Confidence 4568899977766532 23457899999999999 554433333 2 67999999999999999877654
No 77
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.88 E-value=2.5e-05 Score=94.02 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHHhcc-----------CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC-CCeEEEEccChhhHH
Q 006311 423 KLDSDSNSAVHQILSFE-----------GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-KSRILICAPWNRTCD 490 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~-----------~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~-~~rILVcApSNsAaD 490 (651)
.+.+.|..||..++..- ...-.+|+.+.||||| .|.+.++ +++...+ ..+|||++|++.-++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT-----~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKT-----LTSFKAA-RLATELDFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHH-----HHHHHHH-HHHTTCTTCCEEEEEECGGGCCH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHH-----HHHHHHH-HHHHhcCCCceEEEEeCcHHHHH
Confidence 57899999999998630 1235799999999999 8876655 5554322 369999999999999
Q ss_pred HHHHHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhh--cccceEeeehhcchhhhhcC--C-CCC
Q 006311 491 KLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQG--I-TAG 565 (651)
Q Consensus 491 ~l~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L--~~~rIVvtT~ssa~~l~~~~--~-~~~ 565 (651)
++.+.+....+ ..+.+. . + ...+. +.+ ...+|||+|..........+ + ...
T Consensus 345 Q~~~~f~~f~~-~~v~~~--~-----s-~~~l~---------------~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~ 400 (1038)
T 2w00_A 345 QTMKEYQRFSP-DSVNGS--E-----N-TAGLK---------------RNLDKDDNKIIVTTIQKLNNLMKAESDLPVYN 400 (1038)
T ss_dssp HHHHHHHTTST-TCSSSS--C-----C-CHHHH---------------HHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGG
T ss_pred HHHHHHHHhcc-cccccc--c-----C-HHHHH---------------HHhcCCCCCEEEEEHHHHHHHHhcccchhccc
Confidence 99888765222 111110 0 0 00111 112 35789999998776543211 1 123
Q ss_pred CccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCC
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPH 604 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~ 604 (651)
.+++||||||-++......-.|.........+-|.|=|.
T Consensus 401 ~~~lvIiDEAHrs~~~~~~~~I~~~~p~a~~lgfTATP~ 439 (1038)
T 2w00_A 401 QQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPI 439 (1038)
T ss_dssp SCEEEEEESCCTTHHHHHHHHHHHHCSSEEEEEEESSCC
T ss_pred cccEEEEEccchhcchHHHHHHHHhCCcccEEEEeCCcc
Confidence 689999999998765544434432222234666777665
No 78
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.74 E-value=3.2e-05 Score=86.70 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 423 KLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.+.+.|++++..+... ......+++.|.||||| .+..-.+ +.. +.+|+++|||+.-++++.+.+..
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT-----~~~l~~~---~~~--~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKT-----VFVEVLG---MQL--KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHH-----HHHHHHH---HHH--TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHH-----HHHHHHH---HhC--CCcEEEEcCCHHHHHHHHHHHHh
Confidence 4567899987766532 22457899999999999 5432222 222 67999999999999999987754
No 79
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.69 E-value=9.6e-05 Score=83.90 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..+.+.|++|+..++. ..-+++.+|.|+||| ....-.+ +. ...++||++|+.+-+....+++...
T Consensus 43 ~~~rp~Q~~~i~~il~---g~d~lv~~pTGsGKT-----l~~~lpa---l~--~~g~~lVisP~~~L~~q~~~~l~~~-- 107 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA---GKEVFLVMPTGGGKS-----LCYQLPA---LC--SDGFTLVICPLISLMEDQLMVLKQL-- 107 (591)
T ss_dssp CSCCTTHHHHHHHHHT---TCCEEEECCTTSCTT-----HHHHHHH---HT--SSSEEEEECSCHHHHHHHHHHHHHH--
T ss_pred CCCCHHHHHHHHHHHc---CCCEEEEECCCChHH-----HHHHHHH---HH--cCCcEEEEeCHHHHHHHHHHHHHhc--
Confidence 4678889999999998 345899999999999 4322222 22 2569999999999999999888762
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcch---hhh---hcCCCCCCccEEEEecC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSF---RLH---NQGITAGHFSHIFLIDA 575 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~---~l~---~~~~~~~~F~~IiIDEA 575 (651)
+....-+++ .....-.... .. .. ...-..++|+++|..... .+. ........+++|+||||
T Consensus 108 gi~~~~l~~------~~~~~~~~~~-~~-~l-----~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEA 174 (591)
T 2v1x_A 108 GISATMLNA------SSSKEHVKWV-HA-EM-----VNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEV 174 (591)
T ss_dssp TCCEEECCS------SCCHHHHHHH-HH-HH-----HCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETG
T ss_pred CCcEEEEeC------CCCHHHHHHH-HH-Hh-----hcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECc
Confidence 111111111 1111111000 00 00 001246789999986442 111 11122346899999999
Q ss_pred CCCC
Q 006311 576 SSAT 579 (651)
Q Consensus 576 sQat 579 (651)
-.+.
T Consensus 175 H~is 178 (591)
T 2v1x_A 175 HCCS 178 (591)
T ss_dssp GGGS
T ss_pred cccc
Confidence 7644
No 80
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.59 E-value=0.00024 Score=77.55 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=42.7
Q ss_pred HHHHHHhccCCCceEEeCcCCCCCCCCchhHH-HHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 431 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNV-VREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 431 AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~T-lveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
++..++. +...+++.||+||||| .. +..++.+++. .+.++|+++||...|+++.+++.
T Consensus 11 ~i~~~l~--~~~~~lv~a~TGsGKT-----~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 11 VDEDIFR--KKRLTIMDLHPGAGKT-----KRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCGGGGS--TTCEEEECCCTTSSCC-----TTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHh--cCCeEEEECCCCCCHh-----hHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhc
Confidence 3444444 3567799999999999 64 4444445554 36899999999999998888763
No 81
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.59 E-value=2.2e-05 Score=78.65 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=30.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccCh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN 486 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSN 486 (651)
...++|.||||+||| +.+..++..+... +.+|++..+.-
T Consensus 12 G~i~litG~mGsGKT-----T~ll~~~~r~~~~--g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKT-----AELIRRLHRLEYA--DVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHH-----HHHHHHHHHHHHT--TCCEEEEEECC
T ss_pred cEEEEEECCCCCcHH-----HHHHHHHHHHHhc--CCEEEEEEecc
Confidence 357899999999999 7777777766654 77899887643
No 82
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.52 E-value=0.00025 Score=89.54 Aligned_cols=128 Identities=15% Similarity=0.094 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh---------CCCCeEEEEccChhhHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR---------SPKSRILICAPWNRTCDKL 492 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~---------~~~~rILVcApSNsAaD~l 492 (651)
..||+-|.+++..++.. ..-++|..|.|+||| .+.--+|++.+.. ..+.+++++||+.+-|.+.
T Consensus 78 ~~ln~iQs~~~~~al~~--~~N~lv~APTGsGKT-----lva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~ 150 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALET--DENLLLCAPTGAGKT-----NVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEM 150 (1724)
T ss_dssp SBCCHHHHHTHHHHHTC--CCCEEEECCTTSCCH-----HHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC--CCcEEEEeCCcchHH-----HHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHH
Confidence 47999999999999973 456899999999999 4433345544432 1366899999999999999
Q ss_pred HHHHHhhCCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCC---CCCccE
Q 006311 493 MECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGIT---AGHFSH 569 (651)
Q Consensus 493 ~~rL~~~l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~---~~~F~~ 569 (651)
.+.+.+.+.... ++++.. .++. ....+.+..++|+|||......+...... -....+
T Consensus 151 ~~~l~~~~~~~g-i~V~~~-----------------tGd~--~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~ 210 (1724)
T 4f92_B 151 VGSFGKRLATYG-ITVAEL-----------------TGDH--QLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRL 210 (1724)
T ss_dssp HHHHHHHHTTTT-CCEEEC-----------------CSSC--SSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEE
T ss_pred HHHHHHHHhhCC-CEEEEE-----------------ECCC--CCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCE
Confidence 888876332211 122111 0111 01123457789999998765444322211 134789
Q ss_pred EEEecCC
Q 006311 570 IFLIDAS 576 (651)
Q Consensus 570 IiIDEAs 576 (651)
|||||+-
T Consensus 211 vIiDEvH 217 (1724)
T 4f92_B 211 IILDEIH 217 (1724)
T ss_dssp EEETTGG
T ss_pred EEEecch
Confidence 9999994
No 83
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.51 E-value=0.00039 Score=71.97 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHhcc--CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 425 DSDSNSAVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~--~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
|.....++..++... ...+++|+|||||||| |++.++...+... +.+++.+.
T Consensus 19 ~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT------~la~~i~~~~~~~-~~~~~~i~ 72 (324)
T 1l8q_A 19 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKT------HLLQAAGNEAKKR-GYRVIYSS 72 (324)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHH------HHHHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHH------HHHHHHHHHHHHC-CCEEEEEE
Confidence 444455555555432 2468999999999999 7777777666542 55665553
No 84
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.50 E-value=0.0002 Score=82.31 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
..++.+|.+|+..++... .+..+|.|+.|+||| ..+-.++.++. .+++|||||..|+..+.+-.
T Consensus 174 ~~~T~dQ~~al~~~~~~~-~~~~vlta~RGRGKS-----a~lG~~~a~~~-----~~~~vtAP~~~a~~~l~~~~ 237 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP-PGVAAVTAARGRGKS-----ALAGQLISRIA-----GRAIVTAPAKASTDVLAQFA 237 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC-SEEEEEEECTTSSHH-----HHHHHHHHHSS-----SCEEEECSSCCSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh-hCeEEEecCCCCCHH-----HHHHHHHHHHH-----hCcEEECCCHHHHHHHHHHh
Confidence 468999999999988743 356899999999999 55555555432 35799999999999776654
No 85
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.45 E-value=7e-05 Score=83.56 Aligned_cols=128 Identities=8% Similarity=-0.010 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..+.+.|.+|+..++. ..-.++.+|.|+||| ....- -.+ .. ..++||++|+.+-+....+++...
T Consensus 24 ~~~r~~Q~~~i~~il~---g~d~lv~apTGsGKT-----l~~~l--p~l-~~--~g~~lvi~P~~aL~~q~~~~l~~~-- 88 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS---GRDCLVVMPTGGGKS-----LCYQI--PAL-LL--NGLTVVVSPLISLMKDQVDQLQAN-- 88 (523)
T ss_dssp SSCCTTHHHHHHHHHT---TCCEEEECSCHHHHH-----HHHHH--HHH-HS--SSEEEEECSCHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHc---CCCEEEECCCCcHHH-----HHHHH--HHH-Hh--CCCEEEECChHHHHHHHHHHHHHc--
Confidence 3567789999999997 346899999999999 43221 112 22 468999999999999999888752
Q ss_pred CcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhh-hhcCCCCCCccEEEEecCCCCC
Q 006311 502 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDASSAT 579 (651)
Q Consensus 502 ~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l-~~~~~~~~~F~~IiIDEAsQat 579 (651)
+....-+++. ...+-.. .... .-.-...+|+++|....... ....+....+++||||||-...
T Consensus 89 gi~~~~l~~~------~~~~~~~-~~~~--------~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 89 GVAAACLNST------QTREQQL-EVMT--------GCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (523)
T ss_dssp TCCEEEECTT------SCHHHHH-HHHH--------HHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred CCcEEEEeCC------CCHHHHH-HHHH--------HHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC
Confidence 1111111111 1110000 0000 00013478898887654211 1111334578999999997654
No 86
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.41 E-value=6.2e-05 Score=72.72 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=29.1
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 485 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS 485 (651)
...+|.||||+||| +.+...+...... +.++++..+.
T Consensus 4 ~i~vi~G~~gsGKT-----T~ll~~~~~~~~~--g~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVITGPMYSGKT-----TELLSFVEIYKLG--KKKVAVFKPK 40 (184)
T ss_dssp CEEEEEESTTSSHH-----HHHHHHHHHHHHT--TCEEEEEEEC
T ss_pred EEEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEeec
Confidence 46899999999999 7766777666554 6789888775
No 87
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.41 E-value=0.00088 Score=63.35 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+...+++...+.....++++|+|||||||| +++.++.+.+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT------~l~~~l~~~~ 62 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKT------ATAIALARDL 62 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHH------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHH------HHHHHHHHHH
Confidence 5677777877776444456999999999999 5666555444
No 88
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.35 E-value=0.00042 Score=75.93 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=39.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHH-HHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVV-REAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~Tl-veaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
...++|.||.||||| ... ..++..+.. .+.++||++||...|+++.+++.
T Consensus 21 ~~~vlv~a~TGsGKT-----~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 21 RQMTVLDLHPGSGKT-----RKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp TCEEEECCCTTSCTT-----TTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHH-----HHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhc
Confidence 567899999999999 663 343434443 37899999999999999988874
No 89
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.32 E-value=0.0011 Score=68.19 Aligned_cols=42 Identities=14% Similarity=-0.035 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhcc-CCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 422 YKLDSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~-~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.-.++...+.+...+... .+.++++.|||||||| +++.++.+
T Consensus 28 ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT------~la~~la~ 70 (324)
T 3u61_B 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKT------TVAKALCH 70 (324)
T ss_dssp SCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHH------HHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHH------HHHHHHHH
Confidence 345778888888887643 2456788888999999 66666644
No 90
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.32 E-value=0.0011 Score=72.07 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=37.6
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHH-HHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVL-QIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~-qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
..++|.||.|+||| .+..-+++ .++.. +.++++++||...|+++.+.+.
T Consensus 3 ~~~lv~a~TGsGKT-----~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 3 ELTVLDLHPGAGKT-----RRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CEEEEECCTTSCTT-----TTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHH-----HHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC
Confidence 46899999999999 66433333 44443 6799999999999999887663
No 91
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00059 Score=71.84 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=28.1
Q ss_pred CccEEEEecCCCCChHhHHHHHhcccc-CCCeE--EEEeCCCCCCc
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLAN-ENTRV--IVTGAPHNSPS 608 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~-~~~rv--VLaGD~~QL~P 608 (651)
...+||+||+-+...-+.|-++..... .+.++ |++|-...++.
T Consensus 132 ~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 132 RKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp CEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred CceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 356899999999887788887764321 23444 45565555554
No 92
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.15 E-value=0.00041 Score=67.76 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=30.9
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 485 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS 485 (651)
..+++.||.|+||| +.+..++.....+ +.+|++..|+
T Consensus 9 ~i~v~~G~mgsGKT-----T~ll~~a~r~~~~--g~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKS-----EELIRRIRRAKIA--KQKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred EEEEEECCCCCcHH-----HHHHHHHHHHHHC--CCEEEEEEec
Confidence 37899999999999 8888877776554 8899999876
No 93
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.14 E-value=0.0012 Score=75.25 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=39.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHH-HHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVV-REAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~Tl-veaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
..-+++.+|.||||| ... ..++..+.. .+.++|+++||...|+++.+++.
T Consensus 186 g~dvlv~a~TGSGKT-----~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 186 KRLTIMDLHPGAGKT-----KRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp TCEEEECCCTTSSTT-----TTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCeEEEEcCCCCCHH-----HHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHHHhc
Confidence 567899999999999 664 444444444 36799999999999999988774
No 94
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.14 E-value=0.00079 Score=67.15 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=30.0
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccCh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN 486 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSN 486 (651)
..+++.||.|+||| +.+...+...... +.+|++..|.-
T Consensus 29 ~l~vitG~MgsGKT-----T~lL~~a~r~~~~--g~kVli~k~~~ 66 (214)
T 2j9r_A 29 WIEVICGSMFSGKS-----EELIRRVRRTQFA--KQHAIVFKPCI 66 (214)
T ss_dssp EEEEEECSTTSCHH-----HHHHHHHHHHHHT--TCCEEEEECC-
T ss_pred EEEEEECCCCCcHH-----HHHHHHHHHHHHC--CCEEEEEEecc
Confidence 37789999999999 7777777766554 88999988753
No 95
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.06 E-value=0.001 Score=72.52 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=39.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
..-.+|+||.||||| .+..-++++.+.. .+.++|+++||...|.++.+.+.
T Consensus 8 g~~vlv~a~TGSGKT-----~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~ 58 (440)
T 1yks_A 8 GMTTVLDFHPGAGKT-----RRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFH 58 (440)
T ss_dssp TCEEEECCCTTSSTT-----TTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEcCCCCCHH-----HHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHh
Confidence 457899999999999 6644444443332 36799999999999999988875
No 96
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.05 E-value=0.0005 Score=79.26 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=42.1
Q ss_pred HHHHHHHhc---cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 430 SAVHQILSF---EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 430 ~AV~~iL~~---~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
+|+..++.. ....-.+|+||.||||| ....-++++.+.. .+.++||++||...|+++.+++.
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKT-----l~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKT-----RRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTT-----TTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHH-----HHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHh
Confidence 777666510 12567899999999999 6543334433332 46899999999999999888775
No 97
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.04 E-value=0.00079 Score=70.02 Aligned_cols=42 Identities=21% Similarity=0.123 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHhc----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+.+.+.+...+.. .....++|+|||||||| +++.++...+.
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT------~l~~~~~~~~~ 69 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKT------AVARLVLRRLE 69 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHH------HHHHHHHHHHH
Confidence 66777777776632 24568999999999999 66666655443
No 98
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.02 E-value=0.0026 Score=65.87 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=21.5
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...+++|+|||||||| +++.+|....
T Consensus 24 ~~~~vLi~Ge~GtGKt------~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKE------LVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHH------HHHHHHHHHS
T ss_pred CCCcEEEECCCCchHH------HHHHHHHHhC
Confidence 4679999999999999 7777776644
No 99
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.02 E-value=0.00077 Score=66.30 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=31.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 485 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS 485 (651)
..++|+||.|+||| +-|..++...... +.+|++.+|.
T Consensus 21 ~l~fiyG~MgsGKT-----t~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKS-----TELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHH-----HHHHHHHHHHHHT--TCCEEEEEET
T ss_pred EEEEEECCCCCcHH-----HHHHHHHHHHHHc--CCeEEEEccc
Confidence 48899999999999 8899988877665 7899999875
No 100
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.90 E-value=0.0024 Score=66.67 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHhc----cCCC--ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc-cChhhHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF----EGQS--PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA-PWNRTCDKLMECLM 497 (651)
Q Consensus 425 N~~Q~~AV~~iL~~----~~~~--p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA-pSNsAaD~l~~rL~ 497 (651)
.+.+.+.+...+.. .... .++|.|||||||| |++.++...+....+..++.+. ........+...+.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKT------tl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKT------VTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHH------HHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHH------HHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 56666666666543 2223 7999999999999 6667776655532133444333 33333444455544
Q ss_pred h
Q 006311 498 K 498 (651)
Q Consensus 498 ~ 498 (651)
.
T Consensus 96 ~ 96 (389)
T 1fnn_A 96 R 96 (389)
T ss_dssp H
T ss_pred H
Confidence 4
No 101
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.90 E-value=0.002 Score=62.22 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..|....+++...+......+++|+|||||||| +++.++...+.. .+.++....
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT------~la~~l~~~~~~-~~~~~~~~~ 87 (242)
T 3bos_A 34 AGNDELIGALKSAASGDGVQAIYLWGPVKSGRT------HLIHAACARANE-LERRSFYIP 87 (242)
T ss_dssp -CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHH------HHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHH------HHHHHHHHHHHH-cCCeEEEEE
Confidence 456677777777665434678999999999999 666666665554 245555543
No 102
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=0.0015 Score=67.84 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHH-hccCCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 425 DSDSNSAVHQIL-SFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 425 N~~Q~~AV~~iL-~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
++...+++...+ ...+.+.++|.||+||||| |++.++..
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKT------tl~~~la~ 58 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKK------TRCMALLE 58 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHH------HHHHTHHH
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHH------HHHHHHHH
Confidence 667777777766 4333344999999999999 77777766
No 103
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.0018 Score=67.55 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=32.4
Q ss_pred CCccEEEEecCCCCChHhH--HHHHhccccCCCeEEEEe-CCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPET--MIVLGNLANENTRVIVTG-APHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~--LIpL~~la~~~~rvVLaG-D~~QL~PvV~S~ 613 (651)
+.+.+||||||..++.... |.....-...++.+||+. ++..+.|.+.|.
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 3578999999988875432 332221122356777764 677899988887
No 104
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=96.84 E-value=0.00081 Score=82.11 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=47.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh----------CCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----------SPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~----------~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
.+..+|...+||||| .||++.++.++.. ....+||++|+||+||.++-+|+.+.
T Consensus 16 ~g~~lV~AsAGSGKT-----~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 16 QGERLIEASAGTGKT-----FTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SSCEEEECCTTSCHH-----HHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHH-----HHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 357799999999999 9999999999863 12458999999999999999999873
No 105
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.84 E-value=0.0042 Score=64.93 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=29.8
Q ss_pred CCccEEEEecCCCCChHhHHHHHhc-ccc--CCCeEEEE-eCCCCCCccccCh
Q 006311 565 GHFSHIFLIDASSATEPETMIVLGN-LAN--ENTRVIVT-GAPHNSPSRVRSD 613 (651)
Q Consensus 565 ~~F~~IiIDEAsQatEpE~LIpL~~-la~--~~~rvVLa-GD~~QL~PvV~S~ 613 (651)
+.+.+||||||-.+++.. .-.|.. +-. .++.+||+ .++.++.|.+.|.
T Consensus 107 ~~~kvviIdead~l~~~a-~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAA-ANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp SSCEEEEESCGGGBCHHH-HHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CCcEEEEECchhhcCHHH-HHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 457899999998877532 222222 222 24566655 4566788888774
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.79 E-value=0.00067 Score=63.99 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHhc------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 425 DSDSNSAVHQILSF------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 425 N~~Q~~AV~~iL~~------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
++.|+.|+..+... .....++|+|||||||| |++.++...+....+..++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKT------tL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKT------HLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHH------HHHHHHHHHHHHHSCCCCCEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHH------HHHHHHHHHHHHHcCCeEEEE
Confidence 78899998877632 12467899999999999 777777666642235455443
No 107
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.54 E-value=0.02 Score=61.82 Aligned_cols=149 Identities=11% Similarity=0.126 Sum_probs=88.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCC
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
..|++.|+..+..+-. ....+|..+-+.||| ..++..++..+...++.+|+++|+|-..|..+.+++...+.
T Consensus 162 ~~L~p~Qk~il~~l~~---~R~~vi~~sRq~GKT-----~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS---KRMTVCNLSRQLGKT-----TVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCCHHHHHHHHHHHH---SSEEEEEECSSSCHH-----HHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhcc---CcEEEEEEcCcCChh-----HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3689999999887543 346899999999999 77666665544445788999999999998888776654111
Q ss_pred Ccc-hhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchhhhhcCCCCCCccEEEEecCCCCCh
Q 006311 502 ASE-MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 580 (651)
Q Consensus 502 ~~~-i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~l~~~~~~~~~F~~IiIDEAsQatE 580 (651)
... .++- .+ ..........+ ....|.+.+. ..+.+. | .+++.+++||++....
T Consensus 234 ~~P~ll~~--------~~-------~~~~~~~I~f~-----nGs~i~~lsa-~~~slr--G---~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 234 LLPDFLQP--------GI-------VEWNKGSIELD-----NGSSIGAYAS-SPDAVR--G---NSFAMIYIEDCAFIPN 287 (385)
T ss_dssp HSCTTTSC--------CE-------EEECSSEEEET-----TSCEEEEEEC-SHHHHH--T---SCCSEEEEESGGGSTT
T ss_pred hChHhhhh--------hh-------ccCCccEEEeC-----CCCEEEEEEC-CCCCcc--C---CCCCEEEechhhhcCC
Confidence 000 0100 00 00000000001 2344444433 222222 2 2578999999998875
Q ss_pred -HhHHHHHhc-cc-cCCCeEEEEeCCC
Q 006311 581 -PETMIVLGN-LA-NENTRVIVTGAPH 604 (651)
Q Consensus 581 -pE~LIpL~~-la-~~~~rvVLaGD~~ 604 (651)
++.+-.+.. +. ..+.++++++=|.
T Consensus 288 ~~el~~al~~~ls~~~~~kiiiiSTP~ 314 (385)
T 2o0j_A 288 FHDSWLAIQPVISSGRRSKIIITTTPN 314 (385)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEECCC
T ss_pred CHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 454443332 22 2457899988765
No 108
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.53 E-value=0.012 Score=66.51 Aligned_cols=69 Identities=9% Similarity=-0.047 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 422 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..|++.|+..+..+-. ....+|.+|.|+||| .+++..++..+...++.+|+++++|-..|..+.+++..
T Consensus 162 ~~l~p~Q~~i~~~l~~---~r~~~i~~~Rq~GKS-----~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSS---KRMTVCNLSRQLGKT-----TVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCCHHHHHHHHHHHH---CSEEEEEECSSSCHH-----HHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhhcc---ccEEEEEEcCccChH-----HHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4689999999887632 456899999999999 77765555545545778999999999999888876654
No 109
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0019 Score=59.59 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+++.+.+...+.......++|+|||||||| +++.++.+.+.
T Consensus 27 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT------~l~~~~~~~~~ 68 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKT------AIVEGLAQRII 68 (195)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSCHH------HHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCceEEECCCCCCHH------HHHHHHHHHHH
Confidence 4556666666665444567999999999999 66666655443
No 110
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.46 E-value=0.0065 Score=67.47 Aligned_cols=43 Identities=16% Similarity=-0.037 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHhc-----------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 423 KLDSDSNSAVHQILSF-----------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~-----------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
--++.+.+.+...+.. ....+++|+|||||||| +++.++.+.+
T Consensus 42 iG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKT------tla~~la~~l 101 (516)
T 1sxj_A 42 CGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT------TAAHLVAQEL 101 (516)
T ss_dssp CSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHH------HHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHH------HHHHHHHHHc
Confidence 3477888888877753 02368999999999999 6777665533
No 111
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.46 E-value=0.0023 Score=61.21 Aligned_cols=51 Identities=16% Similarity=0.095 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHhc---c-C---CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 425 DSDSNSAVHQILSF---E-G---QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 425 N~~Q~~AV~~iL~~---~-~---~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
+..|++|+..+... . . +.+++|+|||||||| +++.++...+.. .+.+++.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT------~la~~i~~~~~~-~~~~~~~~ 88 (202)
T 2w58_A 31 DDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKT------YLLAAIANELAK-RNVSSLIV 88 (202)
T ss_dssp SHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHH------HHHHHHHHHHHT-TTCCEEEE
T ss_pred ChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHH------HHHHHHHHHHHH-cCCeEEEE
Confidence 44566665544322 1 1 168999999999999 667777665553 34555543
No 112
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.44 E-value=0.0037 Score=72.08 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
..-+++.||+|+||| .. ++..+... .+.++++|+..+|.++.+++.+
T Consensus 155 rk~vlv~apTGSGKT-----~~---al~~l~~~---~~gl~l~PtR~LA~Qi~~~l~~ 201 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKT-----YH---AIQKYFSA---KSGVYCGPLKLLAHEIFEKSNA 201 (677)
T ss_dssp CEEEEEECCTTSSHH-----HH---HHHHHHHS---SSEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHH-----HH---HHHHHHhc---CCeEEEeCHHHHHHHHHHHHHh
Confidence 346899999999999 52 22223332 3458999999999999999875
No 113
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.41 E-value=0.0021 Score=58.93 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=20.9
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
...+++|+|||||||| +++.++.+.
T Consensus 23 ~~~~vll~G~~GtGKt------~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRM------TGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHH------HHHHHHHHS
T ss_pred CCCCEEEECCCCCCHH------HHHHHHHHh
Confidence 4679999999999999 778877653
No 114
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.31 E-value=0.0098 Score=58.45 Aligned_cols=40 Identities=0% Similarity=-0.169 Sum_probs=30.7
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccCh
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN 486 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSN 486 (651)
..+.++|++++|+||| +....+.+..+.+ +.||+++.+-.
T Consensus 27 ~~g~i~v~tG~GkGKT-----TaA~GlalRA~g~--G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKT-----TAAFGTAARAVGH--GKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHH-----HHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred cCceEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEEeeC
Confidence 3678999999999999 5555555555654 89999996644
No 115
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.29 E-value=0.0026 Score=58.79 Aligned_cols=42 Identities=17% Similarity=0.003 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+.+.+.+...+.......++|+|||||||| +++.++.+.+.
T Consensus 27 ~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT------~la~~~~~~~~ 68 (187)
T 2p65_A 27 RDTEIRRAIQILSRRTKNNPILLGDPGVGKT------AIVEGLAIKIV 68 (187)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEESCGGGCHH------HHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCceEEECCCCCCHH------HHHHHHHHHHH
Confidence 4455566666555444567899999999999 66666655553
No 116
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.28 E-value=0.0043 Score=61.33 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 421 NYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+.--++.+++++..++.. ..+.+++|+|||||||| +++.++...+
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT------~la~~la~~~ 63 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKT------LLAKAVATEA 63 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHH------HHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHH------HHHHHHHHHh
Confidence 334467777777765531 12457899999999999 7777776644
No 117
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.24 E-value=0.0089 Score=59.73 Aligned_cols=38 Identities=8% Similarity=0.026 Sum_probs=29.8
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccCh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN 486 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSN 486 (651)
...+|.||-|+||| +.+...+...... +.++++..|.-
T Consensus 29 ~I~vitG~M~sGKT-----T~Llr~~~r~~~~--g~kvli~kp~~ 66 (219)
T 3e2i_A 29 WIECITGSMFSGKS-----EELIRRLRRGIYA--KQKVVVFKPAI 66 (219)
T ss_dssp EEEEEEECTTSCHH-----HHHHHHHHHHHHT--TCCEEEEEEC-
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCceEEEEecc
Confidence 47899999999999 7687777665554 78899998854
No 118
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.23 E-value=0.0028 Score=63.83 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=33.0
Q ss_pred CCCCCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 419 YSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 419 ~~~~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
|.+..-.+++++++...+.. .....++|+|||||||| +++.++...
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT------~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT------LLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHH------HHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHH------HHHHHHHHH
Confidence 33344578888888776632 23567999999999999 777777553
No 119
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.18 E-value=0.012 Score=64.44 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=26.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE-EccChh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI-CAPWNR 487 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV-cApSNs 487 (651)
..+++.||+|+||| +|++.+...+.. .+.+|++ ++.+..
T Consensus 98 ~vI~lvG~~GsGKT-----Tt~~kLA~~l~~--~G~kVllv~~D~~r 137 (433)
T 3kl4_A 98 FIIMLVGVQGSGKT-----TTAGKLAYFYKK--RGYKVGLVAADVYR 137 (433)
T ss_dssp EEEEECCCTTSCHH-----HHHHHHHHHHHH--TTCCEEEEEECCSC
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHH--cCCeEEEEecCccc
Confidence 35788999999999 777666655544 3667655 555543
No 120
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.13 E-value=0.0056 Score=69.84 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 424 LDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.-+.|++.+..+... ......++..|.||||| ....-.+++.+.. .+.+|+++|+|+.-++++.+.+..
T Consensus 4 ~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT-----~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 4 NRQYQVEAIDFLRSSLQKSYGVALESPTGSGKT-----IMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp -CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHH-----HHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHH-----HHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHH
Confidence 357898888866543 22567899999999999 5544433333332 367999999999999999877654
No 121
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.12 E-value=0.0041 Score=62.85 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+++|+|||||||| +++.++.+.+
T Consensus 50 ~~~vll~G~~GtGKT------~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKT------EIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHH------HHHHHHHHHH
T ss_pred CceEEEECCCCCCHH------HHHHHHHHHh
Confidence 568999999999999 7777777655
No 122
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.05 E-value=0.0041 Score=63.23 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=21.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
..+++|+|||||||| +++.++.+.+..
T Consensus 67 ~~~vll~G~~GtGKT------~la~~la~~l~~ 93 (309)
T 3syl_A 67 TLHMSFTGNPGTGKT------TVALKMAGLLHR 93 (309)
T ss_dssp CCEEEEEECTTSSHH------HHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHH------HHHHHHHHHHHh
Confidence 346999999999999 777777666543
No 123
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.99 E-value=0.013 Score=59.18 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=29.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 485 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS 485 (651)
..+++.||.|+||| +.+...+..... .+.+|++..|.
T Consensus 20 ~l~v~~G~MgsGKT-----T~lL~~~~r~~~--~g~kvli~kp~ 56 (234)
T 2orv_A 20 QIQVILGPMFSGKS-----TELMRRVRRFQI--AQYKCLVIKYA 56 (234)
T ss_dssp EEEEEECCTTSCHH-----HHHHHHHHHHHT--TTCCEEEEEET
T ss_pred EEEEEECCCCCcHH-----HHHHHHHHHHHH--CCCeEEEEeec
Confidence 47899999999999 777777766544 48899998874
No 124
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.94 E-value=0.0054 Score=63.62 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=33.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 418 PYSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 418 ~~~~~~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.|.+..-.+.+++++..++.. .....+||+|||||||| +++.++...+
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT------~la~aia~~~ 75 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS------YLAKAVATEA 75 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHH------HHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHH------HHHHHHHHHH
Confidence 344445578888888877621 11345899999999999 7777776643
No 125
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.94 E-value=0.0022 Score=58.74 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.5
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
...+++|+|||||||| +++.++.
T Consensus 26 ~~~~vll~G~~GtGKt------~lA~~i~ 48 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFE------TVARYFH 48 (143)
T ss_dssp CSSCEEEEEETTCCHH------HHHGGGC
T ss_pred CCCcEEEECCCCccHH------HHHHHHH
Confidence 4678999999999999 6665553
No 126
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.0081 Score=61.03 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
++...+.+...+...+.++++|+|||||||| +++.++.+.+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT------~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKT------TAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHH------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHH------HHHHHHHHHhc
Confidence 6777777777776444557999999999999 66666655443
No 127
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0071 Score=66.24 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=40.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 416 LCPYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 416 ~~~~~~~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...|.+..--++|++.+..++-. ..+.=+|++|||||||| .+|.|+..-+ +..++.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKT------llAkAiA~e~----~~~f~~v 246 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKT------LLARACAAQT----NATFLKL 246 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHH------HHHHHHHHHH----TCEEEEE
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHH------HHHHHHHHHh----CCCEEEE
Confidence 34566667788898888765321 11334899999999999 7777776543 3455555
Q ss_pred ccC
Q 006311 483 APW 485 (651)
Q Consensus 483 ApS 485 (651)
..+
T Consensus 247 ~~s 249 (434)
T 4b4t_M 247 AAP 249 (434)
T ss_dssp EGG
T ss_pred ehh
Confidence 544
No 128
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.86 E-value=0.0095 Score=59.51 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=21.8
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...+++|+|||||||| +++.++.+...
T Consensus 28 ~~~~vll~G~~GtGKt------~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKE------LIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHH------HHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHH------HHHHHHHHhcC
Confidence 4679999999999999 77777765443
No 129
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.83 E-value=0.0047 Score=61.65 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=20.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+..++|+|||||||| +++.++...+
T Consensus 44 ~~~vll~G~~GtGKT------~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKT------LLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHH------HHHHHHHHHH
T ss_pred CceEEEECCCCCcHH------HHHHHHHHHh
Confidence 456899999999999 7777776644
No 130
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.78 E-value=0.0064 Score=62.53 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 418 PYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 418 ~~~~~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.|.+..-.+.+++.+...+.. .....++|+|||||||| +++.++...+
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT------~la~ala~~~ 73 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT------LLAKAIANEC 73 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHH------HHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHH------HHHHHHHHHh
Confidence 344344466677777765531 22456999999999999 7777776543
No 131
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.71 E-value=0.0073 Score=61.20 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 423 KLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
--++.+++++...+.. .....++|+|||||||| +++.++...
T Consensus 24 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT------~la~~la~~ 77 (297)
T 3b9p_A 24 AGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKT------LLARAVATE 77 (297)
T ss_dssp CCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHH------HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHH------HHHHHHHHH
Confidence 3477788888776531 12467999999999999 777777653
No 132
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.66 E-value=0.0075 Score=62.20 Aligned_cols=40 Identities=15% Similarity=-0.001 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 426 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 426 ~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+..++++...+......+++|+|||||||| +++.++...+
T Consensus 30 ~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT------~la~~la~~~ 69 (350)
T 1g8p_A 30 EDMKLALLLTAVDPGIGGVLVFGDRGTGKS------TAVRALAALL 69 (350)
T ss_dssp HHHHHHHHHHHHCGGGCCEEEECCGGGCTT------HHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCCCceEEEECCCCccHH------HHHHHHHHhC
Confidence 334444433332223567999999999999 7777776644
No 133
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.0048 Score=67.50 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=38.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----c------C---CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 417 CPYSNYKLDSDSNSAVHQILSF----E------G---QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 417 ~~~~~~~LN~~Q~~AV~~iL~~----~------~---~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..|.+..--++|++.+..++.. . + +.=+|++|||||||| ++|.|+..-+ +..++.+.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT------~lakAiA~~~----~~~~~~v~ 238 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKT------MLVKAVANST----KAAFIRVN 238 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHH------HHHHHHHHHH----TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHH------HHHHHHHHHh----CCCeEEEe
Confidence 4565555567888887765531 0 1 223899999999999 7777776544 34555554
Q ss_pred cC
Q 006311 484 PW 485 (651)
Q Consensus 484 pS 485 (651)
.+
T Consensus 239 ~~ 240 (428)
T 4b4t_K 239 GS 240 (428)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 134
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.64 E-value=0.0083 Score=62.57 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=32.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 418 PYSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 418 ~~~~~~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.|.+..-.++.++++..++.. .....+||+|||||||| +++.++...+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT------~la~ala~~~ 69 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKS------YLAKAVATEA 69 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHH------HHHHHHHHHT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHH------HHHHHHHHHc
Confidence 344444467777777766521 11246899999999999 7777776544
No 135
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.59 E-value=0.0072 Score=62.31 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+++..+.+...+.....+.++|+|||||||| |++.++...+.
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT------~la~~la~~l~ 83 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKT------STILALTKELY 83 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHH------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHH------HHHHHHHHHhC
Confidence 4455666766665433356999999999999 77777766553
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.59 E-value=0.008 Score=59.78 Aligned_cols=48 Identities=10% Similarity=0.224 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 419 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 419 ~~~~~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
|.+.--.+.+++++..++.. ..+..++|+|||||||| |++.++...+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT------~la~~la~~~~ 70 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT------LLAKAIAGEAK 70 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHH------HHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHH------HHHHHHHHHcC
Confidence 33334466777776655431 12456899999999999 88888876553
No 137
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.55 E-value=0.017 Score=66.25 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
..++..|.+|+..++.. .+....++.|.+|+||| .|++.++.+. +..+||+||+...|..+.+.+...
T Consensus 7 ~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt-----~~~a~~~~~~-----~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 7 PSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKT-----VTMAKVIEAL-----GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHH-----HHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHH-----HHHHHHHHHh-----CCCEEEEecCHHHHHHHHHHHHHH
Confidence 46788899999987654 23345689999999999 9998877543 346999999999999999999886
Q ss_pred CCCcch
Q 006311 500 IPASEM 505 (651)
Q Consensus 500 l~~~~i 505 (651)
+++..+
T Consensus 77 ~~~~~V 82 (664)
T 1c4o_A 77 FPENAV 82 (664)
T ss_dssp CTTSEE
T ss_pred CCCCeE
Confidence 655433
No 138
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.013 Score=64.31 Aligned_cols=59 Identities=10% Similarity=0.149 Sum_probs=38.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 417 CPYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 417 ~~~~~~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..|.+..--++|++.+..++.. ..+.=+|++|||||||| ++|.|+..-+ +..++.+.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKT------llAkAiA~e~----~~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKT------LLAKAVAATI----GANFIFSP 247 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHH------HHHHHHHHHH----TCEEEEEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHH------HHHHHHHHHh----CCCEEEEe
Confidence 4566555677888888766532 11334899999999999 7777776544 34555544
Q ss_pred cC
Q 006311 484 PW 485 (651)
Q Consensus 484 pS 485 (651)
.+
T Consensus 248 ~s 249 (437)
T 4b4t_L 248 AS 249 (437)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.54 E-value=0.01 Score=56.35 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHhcc-CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~-~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+...+.+...+... .+..++|+|||||||| |++.++...+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT------~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKT------SIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHH------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 566777777776532 2347899999999999 66666655444
No 140
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.0087 Score=64.98 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=38.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 417 CPYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 417 ~~~~~~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..|.+..--++|++.++.++.. ..+.=+|++|||||||| .+|.|+..-+ +..++.+.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKT------llAkAiA~e~----~~~f~~v~ 214 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKT------LLARAVAHHT----DCKFIRVS 214 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHH------HHHHHHHHHH----TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHH------HHHHHHHHhh----CCCceEEE
Confidence 4565555567788877765531 12344899999999999 7778776543 34555544
Q ss_pred cC
Q 006311 484 PW 485 (651)
Q Consensus 484 pS 485 (651)
.+
T Consensus 215 ~s 216 (405)
T 4b4t_J 215 GA 216 (405)
T ss_dssp GG
T ss_pred hH
Confidence 43
No 141
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.52 E-value=0.0095 Score=60.27 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++...+.+...+...+.++++|+|||||||| +++.++.+.+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt------~la~~l~~~l 62 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKT------ATAIALARDL 62 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHH------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHH------HHHHHHHHHh
Confidence 5666666666665434456999999999999 6666665544
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.48 E-value=0.019 Score=63.01 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=27.3
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE-EccChhh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI-CAPWNRT 488 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV-cApSNsA 488 (651)
..+++.||+|+||| +|++.++..+.+ .+.+|++ ++.+..+
T Consensus 101 ~vIlivG~~G~GKT-----Tt~~kLA~~l~~--~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 101 TILLMVGIQGSGKT-----TTVAKLARYFQK--RGYKVGVVCSDTWRP 141 (443)
T ss_dssp EEEEEECCTTSSHH-----HHHHHHHHHHHT--TTCCEEEEECCCSST
T ss_pred eEEEEECcCCCCHH-----HHHHHHHHHHHH--CCCeEEEEeCCCcch
Confidence 35789999999999 777776665544 3666654 5555433
No 143
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.47 E-value=0.0084 Score=63.10 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+++|+|||||||| +++.++.+.+
T Consensus 51 ~~~vll~GppGtGKT------~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKT------LLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHH------HHHHHHHHHT
T ss_pred CCeEEEECCCCCCHH------HHHHHHHHHc
Confidence 468999999999999 7888887655
No 144
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.45 E-value=0.018 Score=62.68 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHhccC-CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH-hCCCCeEEEEc
Q 006311 425 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILICA 483 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~-~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~-~~~~~rILVcA 483 (651)
|..-..++..+....+ ..+++|+|||||||| |++.++...+. ..++.+++.+.
T Consensus 113 n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKT------tLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 113 NSFAYHAALEVAKHPGRYNPLFIYGGVGLGKT------HLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp THHHHHHHHHHHHSTTSSCCEEEECSSSSSHH------HHHHHHHHHHHHHCCSSCEEEEE
T ss_pred hHHHHHHHHHHHhCCCCCCeEEEECCCCCCHH------HHHHHHHHHHHHhCCCCeEEEee
Confidence 4444444444444322 568999999999999 77777766553 34566776654
No 145
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.45 E-value=0.0075 Score=62.30 Aligned_cols=39 Identities=10% Similarity=-0.078 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 426 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 426 ~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+...+++...+.. ..+++|+|||||||| +++.++...+.
T Consensus 33 ~~~~~~l~~~l~~--~~~vll~G~pGtGKT------~la~~la~~~~ 71 (331)
T 2r44_A 33 KYMINRLLIGICT--GGHILLEGVPGLAKT------LSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHHHHHH--TCCEEEESCCCHHHH------HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--CCeEEEECCCCCcHH------HHHHHHHHHhC
Confidence 3444555444432 468999999999999 77777766543
No 146
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.013 Score=64.73 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=39.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 416 LCPYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 416 ~~~~~~~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...|.+..--++|++.++.++.. ..+.=+|++|||||||| ++|.|+..-+. ..++.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKT------lLAkAiA~e~~----~~fi~v 274 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKT------LCARAVANRTD----ATFIRV 274 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHH------HHHHHHHHHHT----CEEEEE
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHH------HHHHHHHhccC----CCeEEE
Confidence 35576666678899888865421 12345899999999999 77787765443 355554
Q ss_pred cc
Q 006311 483 AP 484 (651)
Q Consensus 483 Ap 484 (651)
..
T Consensus 275 s~ 276 (467)
T 4b4t_H 275 IG 276 (467)
T ss_dssp EG
T ss_pred Eh
Confidence 44
No 147
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.42 E-value=0.057 Score=63.50 Aligned_cols=121 Identities=8% Similarity=-0.091 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh---h
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK---D 499 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~---~ 499 (651)
...+-|..++-.++.+ . +.+.+.||||| .+.+-.++ +....+..++|+|||..-|....+.+.. .
T Consensus 83 ~pt~VQ~~~ip~ll~G--~---Iaea~TGeGKT-----laf~LP~~--l~aL~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDG--N---IAEMKTGEGKT-----LTSTLPVY--LNALTGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp CCCHHHHHHHHHHHTT--S---EEECCTTSCHH-----HHHHHHHH--HHHTTSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHHhCC--C---EEEccCCcHHH-----HHHHHHHH--HHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 5678899999988863 2 89999999999 55443333 1223477999999999888777665543 1
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchh--hhh------cCCCCCCccEEE
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHN------QGITAGHFSHIF 571 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~--l~~------~~~~~~~F~~Ii 571 (651)
+ + ++++.. ....+... ......+.|+++|..-.+. +.. ..+....+.++|
T Consensus 151 l-g---l~v~~i---~gg~~~~~---------------r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 151 L-G---LTVGLN---LNSMSKDE---------------KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAV 208 (844)
T ss_dssp T-T---CCEEEC---CTTSCHHH---------------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEE
T ss_pred c-C---CeEEEE---eCCCCHHH---------------HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEE
Confidence 1 1 111110 01111111 1122457899999876632 111 113334688999
Q ss_pred EecCCC
Q 006311 572 LIDASS 577 (651)
Q Consensus 572 IDEAsQ 577 (651)
||||-.
T Consensus 209 lDEaD~ 214 (844)
T 1tf5_A 209 IDEVDS 214 (844)
T ss_dssp EETHHH
T ss_pred ECchhh
Confidence 999954
No 148
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.35 E-value=0.013 Score=61.13 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHhc----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+.+.+.+...+.. .....++|+|||||||| +++.++.+.+
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT------~la~~l~~~~ 69 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKT------FVSKYIFNEI 69 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHH------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHH------HHHHHHHHHH
Confidence 55666666655542 23457999999999999 6666665544
No 149
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.31 E-value=0.0079 Score=59.79 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=23.9
Q ss_pred HHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 429 NSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 429 ~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..+++..+.. +...-++|+|||||||| |++.++...+.
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKT------t~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKS------YFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHH------HHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHH------HHHHHHHHHhC
Confidence 3444555542 11225899999999999 66666655553
No 150
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.29 E-value=0.023 Score=58.01 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHhc-----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+...+++...+.. ....+++|+|||||||| +++.++.+.+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT------~la~~i~~~~ 62 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKT------TLAHVIAHEL 62 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHH------HHHHHHHHHh
Confidence 56666666665542 23468999999999999 7777776544
No 151
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.29 E-value=0.014 Score=60.83 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
++...+.+...+...+.+.++++|||||||| |++.++...+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKT------tla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKT------STIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHH------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHH------HHHHHHHHHHc
Confidence 4555556666555333344999999999999 67777666554
No 152
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.29 E-value=0.014 Score=64.06 Aligned_cols=42 Identities=19% Similarity=0.075 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+...+.+..++........||+|||||||| ++++++.+.+.
T Consensus 185 r~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT------~la~~la~~l~ 226 (468)
T 3pxg_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKT------AIAEGLAQQII 226 (468)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTH------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCCeEEECCCCCCHH------HHHHHHHHHHH
Confidence 4566666777776444567899999999999 88888877764
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.28 E-value=0.023 Score=52.66 Aligned_cols=41 Identities=5% Similarity=-0.135 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
..|.++..++..+ ....++|.||+|+||| |++.++...+..
T Consensus 22 g~n~~~~~~l~~~----~g~~~~l~G~~G~GKT------tL~~~i~~~~~~ 62 (149)
T 2kjq_A 22 TENAELVYVLRHK----HGQFIYVWGEEGAGKS------HLLQAWVAQALE 62 (149)
T ss_dssp CCTHHHHHHCCCC----CCSEEEEESSSTTTTC------HHHHHHHHHHHT
T ss_pred CccHHHHHHHHhc----CCCEEEEECCCCCCHH------HHHHHHHHHHHh
Confidence 5677776666654 2568899999999999 777777766653
No 154
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=95.21 E-value=0.055 Score=63.57 Aligned_cols=122 Identities=6% Similarity=-0.128 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh---h
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK---D 499 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~---~ 499 (651)
...+-|..++-.++.+ . +...+.||||| .+.+-.++... ..+.+++|+|||..-|....+.+.. .
T Consensus 74 ~p~~VQ~~~i~~ll~G--~---Iaem~TGsGKT-----laf~LP~l~~~--l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNER--C---IAEMRTGEGKT-----LTATLPAYLNA--LTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp CCCHHHHHHHHHHHSS--E---EEECCTTSCHH-----HHHHHHHHHHH--TTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHhhcccccCC--e---eeeecCCchHH-----HHHHHHHHHHH--HcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 5578899999887763 2 88999999999 55544443222 3477999999999888776665543 1
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcch--hhhhc------CCCCCCccEEE
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSF--RLHNQ------GITAGHFSHIF 571 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~--~l~~~------~~~~~~F~~Ii 571 (651)
+ + +++... ..+.+... +.....+.|+++|..-.+ .+... .+....+.++|
T Consensus 142 l-g---l~v~~i---~GG~~~~~---------------r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lV 199 (853)
T 2fsf_A 142 L-G---LTVGIN---LPGMPAPA---------------KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYAL 199 (853)
T ss_dssp T-T---CCEEEC---CTTCCHHH---------------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEE
T ss_pred c-C---CeEEEE---eCCCCHHH---------------HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEE
Confidence 1 1 111110 00111111 122245789999988653 12211 12335689999
Q ss_pred EecCCCC
Q 006311 572 LIDASSA 578 (651)
Q Consensus 572 IDEAsQa 578 (651)
||||-.+
T Consensus 200 lDEaD~m 206 (853)
T 2fsf_A 200 VDEVDSI 206 (853)
T ss_dssp ESCHHHH
T ss_pred ECchHHH
Confidence 9999643
No 155
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.16 E-value=0.0071 Score=62.17 Aligned_cols=25 Identities=12% Similarity=-0.146 Sum_probs=20.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+.-++|+|||||||| ++++++...+
T Consensus 36 p~~lLl~GppGtGKT------~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKS------FQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHH------HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHh
Confidence 345789999999999 7788777655
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.12 E-value=0.015 Score=58.99 Aligned_cols=41 Identities=7% Similarity=0.004 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++...+.+...+...+.+.++|+|||||||| +++.++.+.+
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt------~la~~l~~~l 66 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPHMIISGMPGIGKT------TSVHCLAHEL 66 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHH------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHH------HHHHHHHHHh
Confidence 5566667777775433445999999999999 6666665544
No 157
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.12 E-value=0.01 Score=60.16 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=22.0
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
.+++|+|||||||| +++.++...+..
T Consensus 48 ~~~ll~G~~GtGKt------~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKT------ELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHH------HHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHH------HHHHHHHHHHcC
Confidence 47999999999999 888888877754
No 158
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.11 E-value=0.013 Score=61.09 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHh---ccC--CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILS---FEG--QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~---~~~--~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+.+++++..+.. ... ...++|+|||||||| +++.++.+.+.
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT------~la~~la~~l~ 95 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKT------AIAMGMAQALG 95 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHH------HHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 5666666544442 222 247999999999999 78888877665
No 159
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.015 Score=63.55 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=37.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----------cC---CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 417 CPYSNYKLDSDSNSAVHQILSF----------EG---QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 417 ~~~~~~~LN~~Q~~AV~~iL~~----------~~---~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..|.+..=-++|++.+..++.. -+ +.=+|++|||||||| .+|.|+..-+. ..++.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKT------lLAkAiA~e~~----~~fi~v~ 248 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKT------LLAKAVANQTS----ATFLRIV 248 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHH------HHHHHHHHHHT----CEEEEEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHH------HHHHHHHHHhC----CCEEEEE
Confidence 4455555567788877765531 01 234899999999999 77777765433 3555444
Q ss_pred c
Q 006311 484 P 484 (651)
Q Consensus 484 p 484 (651)
.
T Consensus 249 ~ 249 (437)
T 4b4t_I 249 G 249 (437)
T ss_dssp S
T ss_pred H
Confidence 3
No 160
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.04 E-value=0.016 Score=61.20 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 423 KLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
--.+.+++++..++.. .....++|+|||||||| +++.++...
T Consensus 87 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT------~la~aia~~ 140 (357)
T 3d8b_A 87 AGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKT------LIGKCIASQ 140 (357)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHH------HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHH------HHHHHHHHH
Confidence 3367777777766531 23567999999999999 777777653
No 161
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.03 E-value=0.017 Score=59.68 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHhc-----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 424 LDSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~-----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
-++...+++...+.. ....+++|+|||||||| +++.++.+.
T Consensus 33 G~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT------~la~~ia~~ 78 (338)
T 3pfi_A 33 GQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKT------TLANIISYE 78 (338)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHH------HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHH------HHHHHHHHH
Confidence 366777777766642 23468999999999999 777777543
No 162
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.01 E-value=0.013 Score=62.02 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+.+++++..++.. .....+||+|||||||| +++.++...+
T Consensus 56 ~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT------~la~ala~~~ 108 (355)
T 2qp9_X 56 LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS------YLAKAVATEA 108 (355)
T ss_dssp GGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHH------HHHHHHHHHh
Confidence 45566666665521 11346899999999999 7777777654
No 163
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.96 E-value=0.034 Score=60.88 Aligned_cols=53 Identities=8% Similarity=0.104 Sum_probs=32.3
Q ss_pred HHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHH
Q 006311 430 SAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKL 492 (651)
Q Consensus 430 ~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l 492 (651)
..+...+.....+.++|+|||||||| |++.++...+. ....-+..++..++.+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKT------tlAr~ia~~~~----~~f~~l~a~~~~~~~i 91 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKT------TLAEVIARYAN----ADVERISAVTSGVKEI 91 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHH------HHHHHHHHHTT----CEEEEEETTTCCHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHH------HHHHHHHHHhC----CCeEEEEeccCCHHHH
Confidence 34444454333467999999999999 88887776443 2333333344444443
No 164
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.96 E-value=0.016 Score=59.93 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHhc----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+.+.+.+...+.. .....++|+|||||||| |++.++...+.
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKT------tl~~~l~~~~~ 70 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKT------AVVKFVLSKLH 70 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHH------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHH------HHHHHHHHHHH
Confidence 56677777766652 23568999999999999 66666665554
No 165
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.95 E-value=0.018 Score=62.80 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 419 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 419 ~~~~~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
|.+..-.+..++++..++.. .....+||+|||||||| +++.++...+ .+..++.+..
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT------~lA~aia~~~---~~~~~~~v~~ 201 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKS------YLAKAVATEA---NNSTFFSISS 201 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHH------HHHHHHHHHC---CSSEEEEECC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHH------HHHHHHHHHc---CCCCEEEEeH
Confidence 33333466778888776621 12356999999999999 7777776543 2344444443
No 166
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.86 E-value=0.021 Score=60.72 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC
Q 006311 419 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 485 (651)
Q Consensus 419 ~~~~~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS 485 (651)
|.+.--.+.+++++..++.. .....+||+|||||||| +++.++...+ +..++.+..+
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT------~la~aia~~~----~~~~~~v~~~ 182 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKT------MLAKAVAAES----NATFFNISAA 182 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHH------HHHHHHHHHT----TCEEEEECSC
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHH------HHHHHHHHhh----cCcEEEeeHH
Confidence 33334477788888877621 12467999999999999 7777775432 4455554443
No 167
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=94.85 E-value=0.079 Score=62.59 Aligned_cols=121 Identities=5% Similarity=-0.111 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh---h
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK---D 499 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~---~ 499 (651)
...+-|..++-.++.+ . +.+.+.|+||| .+.+-.++ +....+.+++|+|||..-|....+.+.. .
T Consensus 111 rP~~VQ~~~ip~Ll~G--~---Iaem~TGeGKT-----La~~LP~~--l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLG--N---VAEMKTGEGKT-----LTCVLPAY--LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp CCCHHHHHHHHHHHTT--E---EEECCTTSCHH-----HHTHHHHH--HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHhcC--C---EEEecCCCccH-----HHHHHHHH--HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4467899999887763 2 89999999999 54433332 1223477999999999888666655543 1
Q ss_pred CCCcchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcchh--hhhc------CCCCCCccEEE
Q 006311 500 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHNQ------GITAGHFSHIF 571 (651)
Q Consensus 500 l~~~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~~--l~~~------~~~~~~F~~Ii 571 (651)
+ + ++++.. ..+.+... +.....+.|+++|..-.+. +... .+....+.++|
T Consensus 179 l-G---Lsv~~i---~gg~~~~~---------------r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lI 236 (922)
T 1nkt_A 179 L-G---LQVGVI---LATMTPDE---------------RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAI 236 (922)
T ss_dssp T-T---CCEEEC---CTTCCHHH---------------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEE
T ss_pred c-C---CeEEEE---eCCCCHHH---------------HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEE
Confidence 1 1 111110 01111111 1222457899999886631 1111 23334689999
Q ss_pred EecCCC
Q 006311 572 LIDASS 577 (651)
Q Consensus 572 IDEAsQ 577 (651)
||||-.
T Consensus 237 VDEaDs 242 (922)
T 1nkt_A 237 VDEVDS 242 (922)
T ss_dssp ETTHHH
T ss_pred EeChHH
Confidence 999854
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.81 E-value=0.013 Score=58.87 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|+|||||||| +++.++.+..
T Consensus 64 ~~~vLl~G~~GtGKT------~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKT------ALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHH------HHHHHHHHHH
T ss_pred CeEEEEECCCCCcHH------HHHHHHHHHh
Confidence 457999999999999 7777776643
No 169
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.80 E-value=0.022 Score=59.06 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=24.1
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH-hCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~-~~~~~rILVc 482 (651)
..+++|+|||||||| +++.++...+. . .+.+|+.+
T Consensus 152 ~~~lll~G~~GtGKT------~La~aia~~~~~~-~g~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKS------YLLAAMAHELSEK-KGVSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHH------HHHHHHHHHHHHH-SCCCEEEE
T ss_pred CceEEEECCCCCCHH------HHHHHHHHHHHHh-cCCcEEEE
Confidence 468999999999999 55555554444 3 35666654
No 170
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.72 E-value=0.02 Score=62.45 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHhc----c-CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 424 LDSDSNSAVHQILSF----E-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~----~-~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
-.++.++++..++.. . .+..+|++|||||||| +++.++...+.
T Consensus 41 G~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT------~la~ala~~l~ 88 (456)
T 2c9o_A 41 GQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKT------ALALAIAQELG 88 (456)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHH------HHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHH------HHHHHHHHHhC
Confidence 466777766555432 1 2346999999999999 78888777654
No 171
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.65 E-value=0.025 Score=65.59 Aligned_cols=41 Identities=20% Similarity=0.096 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+...+.+..++........||+|||||||| ++++++.+.+
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT------~la~~la~~l 225 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKT------AIAEGLAQQI 225 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTH------HHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHH------HHHHHHHHHH
Confidence 5667777777776545667899999999999 7777777665
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.50 E-value=0.035 Score=53.99 Aligned_cols=57 Identities=11% Similarity=-0.036 Sum_probs=37.8
Q ss_pred HHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 433 HQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 433 ~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
..+|.+ .....++|.||||+||| +.+..++...... +.++++.+.... .+.+.+++.
T Consensus 13 D~~l~gGl~~G~~~~i~G~~GsGKT-----tl~~~~~~~~~~~--~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 13 DEILHGGIPERNVVLLSGGPGTGKT-----IFSQQFLWNGLKM--GEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp HHHTTTSEETTCEEEEEECTTSSHH-----HHHHHHHHHHHHT--TCCEEEEESSSC-HHHHHHHHH
T ss_pred HHHcCCCCCCCcEEEEECCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEEccCC-HHHHHHHHH
Confidence 445532 34568999999999999 5555666665553 667887775544 456666654
No 173
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.32 E-value=0.03 Score=58.46 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHhc-----cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-----~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++.....+...+.. .....++|+|||||||| |++.++...+
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKT------TLa~~ia~~l 75 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT------TLAHIIASEL 75 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHH------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHH------HHHHHHHHHh
Confidence 34555566555532 12367999999999999 8888887765
No 174
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.26 E-value=0.026 Score=59.50 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+++|+|||||||| +++.++.+.+
T Consensus 72 ~~~ill~Gp~GtGKT------~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKT------LMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHH------HHHHHHHHHT
T ss_pred CCCEEEECCCCCCHH------HHHHHHHHHh
Confidence 468999999999999 7777776654
No 175
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.12 E-value=0.029 Score=62.21 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 423 KLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
--.+.|.+.+...+.. ..+..+||+|||||||| +++.++..
T Consensus 207 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT------~lAraia~ 260 (489)
T 3hu3_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT------LIARAVAN 260 (489)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHH------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHH------HHHHHHHH
Confidence 3367777777766542 23456999999999999 77777754
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.11 E-value=0.051 Score=56.30 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhccC-CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~-~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+...+.+...+...+ ...++|+|||||||| +++.++.+.+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT------~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKT------SIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHH------HHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHH------HHHHHHHHHhC
Confidence 5666667776665322 346899999999999 66666665554
No 177
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.04 E-value=0.013 Score=65.24 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=20.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+++|+|||||||| +++.++...+
T Consensus 41 ~~~VLL~GpPGtGKT------~LAraLa~~l 65 (500)
T 3nbx_X 41 GESVFLLGPPGIAKS------LIARRLKFAF 65 (500)
T ss_dssp TCEEEEECCSSSSHH------HHHHHGGGGB
T ss_pred CCeeEeecCchHHHH------HHHHHHHHHH
Confidence 569999999999999 7777776544
No 178
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=94.00 E-value=0.14 Score=60.68 Aligned_cols=138 Identities=9% Similarity=-0.057 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhhCCC
Q 006311 423 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 502 (651)
Q Consensus 423 ~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~l~~ 502 (651)
...+-|..++-.++.+ . +.+...||||| .+.+-.++ +....+.+++|+|||..-|....+-+......
T Consensus 79 ~Pt~VQ~~~ip~LlqG--~---IaeakTGeGKT-----Lvf~Lp~~--L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEG--K---IAEMKTGEGKT-----LVATLAVA--LNALTGKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp CCCHHHHHHHHHHHTT--S---EEECCSTHHHH-----HHHHHHHH--HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHhhcccccCC--c---eeeccCCCchH-----HHHHHHHH--HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 5588899999888763 2 88999999999 65544442 12224779999999998877766655441100
Q ss_pred cchhhhccccccccCCcHHHHHhhhccccccCCChhhhhcccceEeeehhcch-h-hhhc------CCCCC---CccEEE
Q 006311 503 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSF-R-LHNQ------GITAG---HFSHIF 571 (651)
Q Consensus 503 ~~i~Rv~a~~R~~~~v~~~l~~y~~~~~~~f~~p~~~~L~~~rIVvtT~ssa~-~-l~~~------~~~~~---~F~~Ii 571 (651)
. -++++.. ..+++... +.....++|+++|..-.+ . +... .+... .+.++|
T Consensus 147 l-GLsv~~i---~Gg~~~~~---------------r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lI 207 (997)
T 2ipc_A 147 L-GLSVGVI---QHASTPAE---------------RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAI 207 (997)
T ss_dssp T-TCCEEEC---CTTCCHHH---------------HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEE
T ss_pred c-CCeEEEE---eCCCCHHH---------------HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEE
Confidence 0 0111110 01111111 122345789999988664 1 1111 12233 688999
Q ss_pred EecCCCCChHhHHHHHhccccCCCeEEEEe
Q 006311 572 LIDASSATEPETMIVLGNLANENTRVIVTG 601 (651)
Q Consensus 572 IDEAsQatEpE~LIpL~~la~~~~rvVLaG 601 (651)
||||-.+. .....+-+|+.|
T Consensus 208 IDEaDsmL----------iDeartPLIISg 227 (997)
T 2ipc_A 208 IDEVDSIL----------IDEARTPLIISG 227 (997)
T ss_dssp ETTHHHHT----------TSSTTSCEEEEE
T ss_pred EechHHHH----------HhCCCCCeeeeC
Confidence 99994221 122234588888
No 179
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.86 E-value=0.045 Score=54.20 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=30.9
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 419 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 419 ~~~~~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
|.+....++++..++.+... .-+.-++|+|||||||| |++.++...+.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKT------tl~~~i~~~~~ 74 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT------HLARAVAGEAR 74 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHH------HHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHH------HHHHHHHHHhC
Confidence 33334456676666655431 01223899999999999 78888776543
No 180
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.71 E-value=0.038 Score=56.78 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=29.2
Q ss_pred CCCCHHH-HHHHHHHHhcc-C-CCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 422 YKLDSDS-NSAVHQILSFE-G-QSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 422 ~~LN~~Q-~~AV~~iL~~~-~-~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
...|+.+ ..++...+.+. . ..-.+|+|||||||| .++.++..
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt------~~a~ala~ 126 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKT------NIAEAIAH 126 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHH------HHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHH------HHHHHHHh
Confidence 3568877 44466666542 2 235999999999999 66666655
No 181
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.63 E-value=0.022 Score=58.13 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=22.8
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
++|+|||||||| |++.++...+. ...|.+..
T Consensus 47 vlL~Gp~GtGKT------tLakala~~~~---~~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKT------LLAKAVANESG---LNFISVKG 77 (274)
T ss_dssp EEEESSTTSCHH------HHHHHHHHHTT---CEEEEEET
T ss_pred EEEECCCCCcHH------HHHHHHHHHcC---CCEEEEEc
Confidence 899999999999 88888876443 23455543
No 182
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.49 E-value=0.057 Score=57.03 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=40.1
Q ss_pred HHHHHHh----cc-CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 431 AVHQILS----FE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 431 AV~~iL~----~~-~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
.+..+|+ +. ..+.++|.|||||||| +....++.+..+..++.+++....-++.....++++
T Consensus 13 ~LD~~LGg~~~GGl~~GiteI~G~pGsGKT-----tL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~l 78 (333)
T 3io5_A 13 MMNIALSGEITGGMQSGLLILAGPSKSFKS-----NFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSM 78 (333)
T ss_dssp HHHHHHHSSTTCCBCSEEEEEEESSSSSHH-----HHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHT
T ss_pred HHHHHhCCCCCCCCcCCeEEEECCCCCCHH-----HHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHh
Confidence 4556666 31 1237899999999999 666677766666444678888776665544444444
No 183
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.36 E-value=0.053 Score=62.69 Aligned_cols=41 Identities=15% Similarity=0.022 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+.+.+.+..++......+.+|+|||||||| ++++++.+.+
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT------~la~~la~~l 231 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKT------AIAEGLAWRI 231 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHH------HHHHHHHHHH
Confidence 5666777777776545667899999999999 7777776655
No 184
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.13 E-value=0.13 Score=53.30 Aligned_cols=59 Identities=3% Similarity=-0.060 Sum_probs=40.6
Q ss_pred HHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 432 VHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 432 V~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..++++ .....++|.|+||+||| .....++..+... +.+|++.+.- ...+.+..|+..
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKT-----tl~l~ia~~~a~~--g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKT-----AFALKQAKNMSDN--DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHH-----HHHHHHHHHHHTT--TCEEEEEESS-SCHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEECC-CCHHHHHHHHHH
Confidence 3444543 34568999999999999 5555555555543 5789998876 455667777765
No 185
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=93.08 E-value=0.18 Score=57.82 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHhh
Q 006311 422 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 499 (651)
Q Consensus 422 ~~LN~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~~ 499 (651)
...|..|..|+..++.. .+....++.|.+|+||| .+++.++.+. +..+||+||+...|..+...+...
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~-----~~~a~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKT-----FTVSNLIKEV-----NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHH-----HHHHHHHHHH-----CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHH-----HHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHHH
Confidence 46688899999877653 23345688999999999 9998877543 346999999999999999999876
Q ss_pred CCCcc
Q 006311 500 IPASE 504 (651)
Q Consensus 500 l~~~~ 504 (651)
+++..
T Consensus 81 ~~~~~ 85 (661)
T 2d7d_A 81 FPNNA 85 (661)
T ss_dssp CTTSE
T ss_pred cCCCc
Confidence 55443
No 186
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.01 E-value=0.12 Score=48.58 Aligned_cols=47 Identities=9% Similarity=0.026 Sum_probs=29.8
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEE-EEccChhhHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL-ICAPWNRTCDKLMECL 496 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rIL-VcApSNsAaD~l~~rL 496 (651)
.++|.||+|+||| |+++.+.+.+... +..++ .-.|...........+
T Consensus 2 ~I~l~G~~GsGKs------T~~~~L~~~l~~~-g~~v~~~~~~~~~~~g~~~~~~ 49 (197)
T 2z0h_A 2 FITFEGIDGSGKS------TQIQLLAQYLEKR-GKKVILKREPGGTETGEKIRKI 49 (197)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHHHHC-CC-EEEEESSCSSHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHHC-CCeEEEeeCCCCCcHHHHHHHH
Confidence 3679999999999 8888888877652 44443 3345544444444443
No 187
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.90 E-value=0.12 Score=49.31 Aligned_cols=58 Identities=7% Similarity=-0.020 Sum_probs=35.2
Q ss_pred HHHHHHh-c-cCCCceEEeCcCCCCCCCCchhHHHHHHHH-HHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 431 AVHQILS-F-EGQSPYLLEGPLCNNFVLSKTGNVVREAVL-QIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 431 AV~~iL~-~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~-qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
++..++. + .....++|.||||+||| |++..+. .+... +.+|++...... .+.+..++.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKT------tl~~~l~~~~~~~--~~~v~~~~~~~~-~~~~~~~~~ 71 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKT------IFSLHFIAKGLRD--GDPCIYVTTEES-RDSIIRQAK 71 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHH------HHHHHHHHHHHHH--TCCEEEEESSSC-HHHHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHH------HHHHHHHHHHHHC--CCeEEEEEcccC-HHHHHHHHH
Confidence 4555553 2 23468899999999999 5555444 44433 567877765443 444545543
No 188
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.86 E-value=0.11 Score=61.11 Aligned_cols=54 Identities=19% Similarity=0.073 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC------CCCeEEEEcc
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS------PKSRILICAP 484 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~------~~~rILVcAp 484 (651)
.++....+..++........+|+|||||||| ++++++.+.+... .+.+++.+..
T Consensus 175 r~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT------~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRTKNNPVLIGEPGVGKT------AIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CHHHHHHHHHHHHCSSCCCCEEEECTTSCHH------HHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHH------HHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 3455666666665444557899999999999 7888877766431 2556665543
No 189
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.79 E-value=0.075 Score=56.66 Aligned_cols=60 Identities=7% Similarity=-0.101 Sum_probs=37.7
Q ss_pred HHHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 430 SAVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 430 ~AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
..+..+|+ + .....++|.||||+||| +.+..++..+.. .+.+|+..+..++.-...++++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKS-----TLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKT-----TLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHH-----HHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHH-----HHHHHHHHHHHh--cCCeEEEEecccccchHHHHHc
Confidence 34667776 3 34568999999999999 444444443333 3567777766655544455554
No 190
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.79 E-value=0.046 Score=61.85 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 426 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 426 ~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
..-.+.+...+. ...+++|.|||||||| |++.++..++..
T Consensus 47 ~~~l~~l~~~i~--~g~~vll~Gp~GtGKT------tlar~ia~~l~~ 86 (604)
T 3k1j_A 47 EHAVEVIKTAAN--QKRHVLLIGEPGTGKS------MLGQAMAELLPT 86 (604)
T ss_dssp HHHHHHHHHHHH--TTCCEEEECCTTSSHH------HHHHHHHHTSCC
T ss_pred hhhHhhcccccc--CCCEEEEEeCCCCCHH------HHHHHHhccCCc
Confidence 334444444444 2469999999999999 888888876654
No 191
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.74 E-value=0.082 Score=55.44 Aligned_cols=41 Identities=7% Similarity=0.000 Sum_probs=25.9
Q ss_pred HHHHHHHHHHH-h----c--cCCCceEE--eCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 426 SDSNSAVHQIL-S----F--EGQSPYLL--EGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 426 ~~Q~~AV~~iL-~----~--~~~~p~LI--~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+.+.+.+...+ . . .....++| +|||||||| +++..+...+.
T Consensus 28 ~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT------~L~~~~~~~~~ 77 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKT------TLAKFTVKRVS 77 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHH------HHHHHHHHHHH
Confidence 34555555555 2 2 23457888 999999999 55555554443
No 192
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.64 E-value=0.093 Score=50.93 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=35.6
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
....++|.|+||+||| ....+++...... .+.++++++...+ .+.+.+++..
T Consensus 29 ~G~l~~i~G~pG~GKT-----~l~l~~~~~~~~~-~~~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKT-----TFAAQFIYKGAEE-YGEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHH-----HHHHHHHHHHHHH-HCCCEEEEESSSC-HHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHH-----HHHHHHHHHHHHh-cCCCceeecccCC-HHHHHHHHHH
Confidence 4568999999999999 5555555544332 3668888877655 4556666654
No 193
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=92.57 E-value=0.087 Score=64.11 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=39.3
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCC-CeEEEEccChhhHHHHHHHHHhhCC
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK-SRILICAPWNRTCDKLMECLMKDIP 501 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~-~rILVcApSNsAaD~l~~rL~~~l~ 501 (651)
.-+|.|+|||||| +|+++.|..++...+. .+||+.+|....- .+-+|+...++
T Consensus 3 l~lV~agAGSGKT-----~~l~~ri~~ll~~~~~~~~il~lVP~q~TF-t~~~rl~~~l~ 56 (1166)
T 3u4q_B 3 AEFLVGRSGSGKT-----KLIINSIQDELRRAPFGKPIIFLVPDQMTF-LMEYELAKTPD 56 (1166)
T ss_dssp EEEEEECTTSSHH-----HHHHHHHHHHHHHCTTSSCEEEECCGGGHH-HHHHHHTCCSS
T ss_pred EEEEEeCCCCChH-----HHHHHHHHHHHHhCCCCCcEEEEecCcccH-HHHHHHHHhhh
Confidence 4589999999999 9999999988876554 7999996644322 25666765443
No 194
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.55 E-value=0.038 Score=54.02 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=24.1
Q ss_pred CCCCccEEEEecCCCCCh--------HhHHHHHhccccCCCeEEEEeCC
Q 006311 563 TAGHFSHIFLIDASSATE--------PETMIVLGNLANENTRVIVTGAP 603 (651)
Q Consensus 563 ~~~~F~~IiIDEAsQatE--------pE~LIpL~~la~~~~rvVLaGD~ 603 (651)
+.+.-.+||||||..... +..+--+......+-.+||+|=+
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred cccCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 334567999999976521 12233333222234589999977
No 195
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.50 E-value=0.097 Score=57.90 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 419 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 419 ~~~~~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
|.+..-.+++++.+..++.. .-+..++|+|||||||| +++.++....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT------~Laraia~~~ 73 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKT------LLARAVAGEA 73 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHH------HHHHHHHHHc
Confidence 33334467777777766532 12346999999999999 7888776643
No 196
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.35 E-value=0.042 Score=55.41 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=31.7
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 419 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 419 ~~~~~LN~~Q~~AV~~iL~~------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
|.+.-..++++..+..+... .-+.-++|+|||||||| |++.++...+.
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKT------tl~~~i~~~~~ 98 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT------HLARAVAGEAR 98 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHH------HHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHH------HHHHHHHHHcC
Confidence 33344567777777665431 01223899999999999 78888776543
No 197
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.34 E-value=0.16 Score=51.57 Aligned_cols=60 Identities=5% Similarity=-0.085 Sum_probs=37.7
Q ss_pred HHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 432 VHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 432 V~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..+... .....++|.||||+||| |++..+...+....+.+|++....... ..+..|+..
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKT------Tl~~~ia~~~~~~~G~~v~~~~~e~~~-~~~~~r~~~ 85 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKS------TFVRQQALQWGTAMGKKVGLAMLEESV-EETAEDLIG 85 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHH------HHHHHHHHHHHHTSCCCEEEEESSSCH-HHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHH------HHHHHHHHHHHHHcCCeEEEEeCcCCH-HHHHHHHHH
Confidence 4444432 34568999999999999 555555555554345588887665433 345555543
No 198
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.15 E-value=0.099 Score=55.33 Aligned_cols=53 Identities=11% Similarity=-0.031 Sum_probs=34.5
Q ss_pred HHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHH
Q 006311 431 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCD 490 (651)
Q Consensus 431 AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD 490 (651)
.+..+|+ + .....++|.||||+||| +....++..+.+. +.++++.+-..+...
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKT-----tLal~la~~~~~~--g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKT-----TVALHAVANAQAA--GGIAAFIDAEHALDP 103 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHH-----HHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHHhC--CCeEEEEECCCCcCH
Confidence 3556666 3 34568999999999999 5545555555543 667777665554333
No 199
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.07 E-value=0.088 Score=57.77 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=21.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+..++++|||||||| |++.++...+.
T Consensus 50 ~~~iLl~GppGtGKT------~lar~lA~~l~ 75 (444)
T 1g41_A 50 PKNILMIGPTGVGKT------EIARRLAKLAN 75 (444)
T ss_dssp CCCEEEECCTTSSHH------HHHHHHHHHTT
T ss_pred CceEEEEcCCCCCHH------HHHHHHHHHcC
Confidence 356999999999999 78887776553
No 200
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.78 E-value=0.12 Score=55.32 Aligned_cols=58 Identities=9% Similarity=-0.040 Sum_probs=38.5
Q ss_pred HHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 431 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 431 AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
.+..+|+ + .....++|.||||+||| +....++..+.+. +.+|++++...+.....+++
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKT-----tlal~la~~~~~~--g~~vlyi~~E~s~~~~~a~~ 121 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKT-----TLALAIVAQAQKA--GGTCAFIDAEHALDPVYARA 121 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHH-----HHHHHHHHHHHHT--TCCEEEEESSCCCCHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChH-----HHHHHHHHHHHHC--CCeEEEEECCCChhHHHHHH
Confidence 4566665 2 34568999999999999 5555666555553 66788877766554444333
No 201
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.78 E-value=0.13 Score=54.78 Aligned_cols=51 Identities=8% Similarity=-0.007 Sum_probs=33.7
Q ss_pred HHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhh
Q 006311 431 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRT 488 (651)
Q Consensus 431 AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsA 488 (651)
.+..+|+ + .....++|.||||+||| +....++.++.+. +.++++.+...+.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKT-----tLal~la~~~~~~--g~~vlyid~E~s~ 103 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKT-----TLTLQVIAAAQRE--GKTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEEESSCCC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEeCCCCc
Confidence 3555665 2 34568999999999999 5555555555543 5677777665543
No 202
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.61 E-value=0.072 Score=48.73 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=18.8
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.++|.||||+||| |++..+.+.+
T Consensus 3 ~i~l~G~~GsGKs------T~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKS------TVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 5789999999999 7777776544
No 203
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.59 E-value=0.14 Score=56.95 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhc---c---------CCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 418 PYSNYKLDSDSNSAVHQILSF---E---------GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 418 ~~~~~~LN~~Q~~AV~~iL~~---~---------~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.|.+..-.++++..+..+... . -+..++|+|||||||| +++.+|...+
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKT------tLaraIa~~~ 88 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT------HLARAVAGEA 88 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHH------HHHHHHHHHT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHH------HHHHHHHHHh
Confidence 344444577788887776532 0 1234899999999999 8888887654
No 204
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.51 E-value=0.059 Score=49.69 Aligned_cols=21 Identities=10% Similarity=-0.111 Sum_probs=17.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.++|.||||+||| |++..+.+
T Consensus 4 ~I~i~G~~GsGKS------T~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKS------TWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHH------HHHHHHHH
T ss_pred EEEEecCCCCCHH------HHHHHHHh
Confidence 5789999999999 77776654
No 205
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.20 E-value=0.069 Score=48.50 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=16.3
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAV 467 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI 467 (651)
.++|.||||+||| |++..+
T Consensus 3 ~I~l~G~~GsGKs------T~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKS------EFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHH------HHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHH
Confidence 5789999999999 777766
No 206
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.19 E-value=0.064 Score=62.99 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=16.8
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
=+|++|||||||| +++.++.
T Consensus 240 GILL~GPPGTGKT------~LAraiA 259 (806)
T 3cf2_A 240 GILLYGPPGTGKT------LIARAVA 259 (806)
T ss_dssp EEEEECCTTSCHH------HHHHHHH
T ss_pred eEEEECCCCCCHH------HHHHHHH
Confidence 4899999999999 7776665
No 207
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.13 E-value=0.081 Score=49.03 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=19.2
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.||||+||| |++.++.+.+
T Consensus 4 ~~i~l~G~~GsGKS------T~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKS------GIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHH------HHHHHHHHHS
T ss_pred eEEEEECCCCCCHH------HHHHHHHHhc
Confidence 46899999999999 7777766543
No 208
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.12 E-value=0.19 Score=47.89 Aligned_cols=45 Identities=7% Similarity=-0.022 Sum_probs=29.3
Q ss_pred HHHHHHh-c-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC
Q 006311 431 AVHQILS-F-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 485 (651)
Q Consensus 431 AV~~iL~-~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS 485 (651)
++..++. + .....++|.||||+||| |++..+.. . .+.++++.+..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKT------tl~~~l~~--~--~~~~v~~i~~~ 54 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKT------TLALQTGL--L--SGKKVAYVDTE 54 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHH------HHHHHHHH--H--HCSEEEEEESS
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHH------HHHHHHHH--H--cCCcEEEEECC
Confidence 4566664 2 34568999999999999 55554443 3 25666666543
No 209
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.11 E-value=0.3 Score=53.16 Aligned_cols=60 Identities=5% Similarity=0.046 Sum_probs=40.8
Q ss_pred HHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 431 AVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 431 AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
.+..++++ .....++|.|+||+||| +.+..++..+... .+.+|++.+...++ +.+..|+.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKT-----tl~l~ia~~~~~~-~g~~Vl~~s~E~s~-~~l~~r~~ 252 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKT-----AFALNIAQNVATK-TNENVAIFSLEMSA-QQLVMRML 252 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHH-----HHHHHHHHHHHHH-SSCCEEEEESSSCH-HHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHH-----HHHHHHHHHHHHh-CCCcEEEEECCCCH-HHHHHHHH
Confidence 35555643 34568999999999999 5555555555543 36689998876654 56667764
No 210
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.07 E-value=0.12 Score=57.72 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=22.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...++|.|||||||| |++.++...+.
T Consensus 108 g~~vll~Gp~GtGKT------tlar~ia~~l~ 133 (543)
T 3m6a_A 108 GPILCLAGPPGVGKT------SLAKSIAKSLG 133 (543)
T ss_dssp SCEEEEESSSSSSHH------HHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHH------HHHHHHHHhcC
Confidence 457899999999999 88888887764
No 211
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.04 E-value=0.081 Score=49.21 Aligned_cols=33 Identities=15% Similarity=-0.075 Sum_probs=24.0
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
.++|.||||+||| |++..+.+.+.. .+..+.+.
T Consensus 3 ~I~i~G~~GsGKs------T~~~~L~~~l~~-~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKS------TVLAKVKEILDN-QGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHH------HHHHHHHHHHHT-TTCCEEEE
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHh-cCceEEEE
Confidence 4789999999999 888888776663 24344333
No 212
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.00 E-value=0.11 Score=48.54 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=19.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.||||+||| |++.++.+.+
T Consensus 11 ~~~i~i~G~~GsGKs------t~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKT------TLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHH------HHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHH------HHHHHHHHHh
Confidence 456899999999999 7777766544
No 213
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.76 E-value=0.1 Score=48.72 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=19.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.||||+||| |++.++.+.+
T Consensus 6 ~~i~l~G~~GsGKs------t~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKT------SVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHH------HHHHHHHHHH
T ss_pred CEEEEECCCCCCHH------HHHHHHHHHh
Confidence 46789999999999 8887776544
No 214
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.70 E-value=0.16 Score=51.05 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=24.5
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
-+++.|+||+||| ++.+....++.+. +.+|+++
T Consensus 8 ~I~~~~kgGvGKT-----t~a~~la~~l~~~--G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKT-----YAMLQAAHAQLRQ--GVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHH-----HHHHHHHHHHHHT--TCCEEEE
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHHC--CCCEEEE
Confidence 4788999999999 7767766666654 6677543
No 215
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.62 E-value=0.11 Score=48.20 Aligned_cols=25 Identities=8% Similarity=-0.005 Sum_probs=20.6
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..++|.||||+||| |++..+.+.+.
T Consensus 4 ~~I~i~G~~GsGKs------T~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGST------TSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHH------HHHHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHHH
Confidence 46889999999999 88887777555
No 216
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.58 E-value=0.095 Score=51.96 Aligned_cols=25 Identities=12% Similarity=-0.073 Sum_probs=20.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.||||+||+ |.++.+.+-+
T Consensus 29 ~kiI~llGpPGsGKg------Tqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKG------TQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHH------HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHH------HHHHHHHHHH
Confidence 446788999999999 8888776644
No 217
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.55 E-value=0.26 Score=53.51 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 421 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 421 ~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
+..+...+..++..++. .....++|.||.|+||| |+..++...+.. ...+|++.
T Consensus 148 ~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKT------TlL~allg~l~~-~~g~I~~~ 201 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKS------TTLYAGLQELNS-SERNILTV 201 (418)
T ss_dssp GSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHH------HHHHHHHHHHCC-TTSCEEEE
T ss_pred HcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHH------HHHHHHHhhcCC-CCCEEEEe
Confidence 34567888889988864 33468999999999999 555566665553 34566654
No 218
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.53 E-value=0.25 Score=46.66 Aligned_cols=26 Identities=8% Similarity=-0.181 Sum_probs=21.3
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
..++|.|+||+||| |++..+.+.+..
T Consensus 5 ~~I~i~G~~GsGKs------T~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKS------SQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHH------HHHHHHHHHHhh
Confidence 36789999999999 888888776653
No 219
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.49 E-value=0.36 Score=44.90 Aligned_cols=31 Identities=6% Similarity=-0.050 Sum_probs=22.6
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEE
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL 480 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rIL 480 (651)
.++|.|+||+||| |++..+.+.+.. .+..++
T Consensus 2 ~I~l~G~~GsGKs------T~~~~L~~~l~~-~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKT------TQAKKLYEYLKQ-KGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHH------HHHHHHHHHHHH-TTCCEE
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHH-CCCeEE
Confidence 3679999999999 888888776653 234443
No 220
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.32 E-value=0.11 Score=47.86 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=19.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+.|.||+|+||| |++.++...+
T Consensus 5 ~~i~l~G~~GsGKS------Tl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKS------TIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHH------HHHHHHHHHT
T ss_pred CeEEEECCCCCCHH------HHHHHHHHHh
Confidence 46889999999999 8777776544
No 221
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.29 E-value=0.13 Score=49.26 Aligned_cols=25 Identities=8% Similarity=0.023 Sum_probs=20.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.||+|+||| |++.++...+
T Consensus 29 g~~i~l~G~~GsGKS------Tl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKT------TIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHH------HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHH------HHHHHHHHhh
Confidence 457889999999999 8888776655
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.29 E-value=0.086 Score=61.95 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 417 CPYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 417 ~~~~~~~LN~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
..|.+...-++.++++..++.. ..+.-+|++|||||||| .++.++..
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT------~lAkaiA~ 533 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT------LLAKAIAN 533 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHH------HHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCch------HHHHHHHH
Confidence 4566656667788888766542 11234899999999999 56665543
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.26 E-value=0.26 Score=57.11 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=21.0
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
+++++|||||||| +++.++.+.+..
T Consensus 523 ~~Ll~Gp~GtGKT------~lA~ala~~l~~ 547 (758)
T 3pxi_A 523 SFIFLGPTGVGKT------ELARALAESIFG 547 (758)
T ss_dssp EEEEESCTTSSHH------HHHHHHHHHHHS
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhcC
Confidence 5999999999999 778888777643
No 224
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.19 E-value=0.18 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=17.9
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
..++|.||||+||| |++..+..
T Consensus 34 ~livl~G~sGsGKS------Tla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKT------SLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTH------HHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHH
Confidence 45889999999999 77776654
No 225
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.13 E-value=0.3 Score=49.15 Aligned_cols=50 Identities=8% Similarity=-0.009 Sum_probs=31.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC---------CCCeEEEEccChhhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---------PKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~---------~~~rILVcApSNsAaD~l~~rL~ 497 (651)
...++|.||||+||| |++..+...+... ...++++.+..... +.+..++.
T Consensus 30 G~i~~i~G~~GsGKT------tl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~ 88 (279)
T 1nlf_A 30 GTVGALVSPGGAGKS------MLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLH 88 (279)
T ss_dssp TSEEEEEESTTSSHH------HHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHH
T ss_pred CCEEEEEcCCCCCHH------HHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHH
Confidence 468999999999999 5555444444431 13577776665543 55555544
No 226
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.12 E-value=0.32 Score=46.96 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=18.5
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCC
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFV 455 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT 455 (651)
.+..++++ .....++|.||||+|||
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKT 38 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKT 38 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHH
Confidence 35555642 34568999999999999
No 227
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.02 E-value=0.12 Score=47.94 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=19.2
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.++|.||||+||| |++.++.+.+
T Consensus 6 ~i~i~G~~GsGKs------Tla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKS------TLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHH------HHHHHHHHHH
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHc
Confidence 5789999999999 8888776644
No 228
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.99 E-value=0.17 Score=47.44 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=25.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...++|.|+||+||| |++..+...+.. .+.++.+.
T Consensus 13 ~~~i~l~G~~GsGKs------T~~~~L~~~l~~-~~~~~~~~ 47 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKT------TIATRLADLLQK-EGYRVEVL 47 (186)
T ss_dssp CEEEEEECCTTSSHH------HHHHHHHHHHHH-TTCCEEEE
T ss_pred CcEEEEEcCCCCCHH------HHHHHHHHHHHh-cCCeEEEe
Confidence 346789999999999 777777776664 34555443
No 229
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.82 E-value=0.13 Score=50.46 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=18.2
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+|.||||+||+ |.++.+.+-+
T Consensus 3 Iil~GpPGsGKg------Tqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKG------TQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHH
Confidence 578999999999 8888776644
No 230
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.77 E-value=0.11 Score=48.50 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=27.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..++|.|+||+||| |++..+.+.+. .. .+. .|.+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKS------T~~~~L~~~l~----~~-~i~------~D~~~~~~~~ 45 (193)
T 2rhm_A 5 PALIIVTGHPATGKT------TLSQALATGLR----LP-LLS------KDAFKEVMFD 45 (193)
T ss_dssp CEEEEEEESTTSSHH------HHHHHHHHHHT----CC-EEE------HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHcC----Ce-Eec------HHHHHHHHHH
Confidence 346789999999999 77777765442 22 222 4777666554
No 231
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.76 E-value=0.14 Score=47.47 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=15.0
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.|+||+||| |+++.+.+.+
T Consensus 6 ~~I~l~G~~GsGKS------T~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKT------HTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----C------HHHHHHHHHS
T ss_pred eEEEEECCCCCCHH------HHHHHHHHhc
Confidence 46789999999999 7777765533
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.74 E-value=0.15 Score=48.71 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=20.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.||||+||| |++.++.+.+
T Consensus 25 ~~~i~l~G~~GsGKs------Tl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKT------TLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHH------HHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHH------HHHHHHHHHc
Confidence 347899999999999 8888777655
No 233
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.69 E-value=0.15 Score=47.53 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=19.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+.++|.|+||+||| |++..+.+.+
T Consensus 3 ~~I~l~G~~GsGKs------T~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKS------TIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHH------HHHHHHHHHH
T ss_pred CeEEEECCCCCCHH------HHHHHHHHHc
Confidence 35789999999999 8888776644
No 234
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.65 E-value=0.44 Score=45.19 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=24.1
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI 479 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rI 479 (651)
...++|.|+||+||| |++..+.+.+.. .+..+
T Consensus 9 ~~~I~l~G~~GsGKs------T~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKS------TQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHH------HHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHH------HHHHHHHHHHHH-cCCcE
Confidence 456899999999999 888887776654 34444
No 235
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.47 E-value=0.53 Score=49.72 Aligned_cols=59 Identities=8% Similarity=0.002 Sum_probs=40.7
Q ss_pred HHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 432 VHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 432 V~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..++++ .....++|.|+||+||| ..+..++..+.. .+.+|++.+.--+ ++.+..|+..
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKT-----t~al~ia~~~a~--~g~~Vl~fSlEms-~~ql~~Rlls 95 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKT-----SLMMNMVLSALN--DDRGVAVFSLEMS-AEQLALRALS 95 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHH-----HHHHHHHHHHHH--TTCEEEEEESSSC-HHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHH-----HHHHHHHHHHHH--cCCeEEEEeCCCC-HHHHHHHHHH
Confidence 3344543 34568999999999999 555555555555 4789999988655 4566677754
No 236
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.43 E-value=0.42 Score=52.18 Aligned_cols=59 Identities=3% Similarity=-0.065 Sum_probs=41.8
Q ss_pred HHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 432 VHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 432 V~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..++++ .....++|.|+||+||| .....++..+... +.+|++.+.-.++. .+..|+..
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKT-----tlal~ia~~~a~~--g~~vl~fSlEms~~-ql~~R~~~ 246 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKT-----AFALKQAKNMSDN--DDVVNLHSLEMGKK-ENIKRLIV 246 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHH-----HHHHHHHHHHHHT--TCEEEEECSSSCTT-HHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChH-----HHHHHHHHHHHHc--CCEEEEEECCCCHH-HHHHHHHH
Confidence 4455543 34568999999999999 6666666666664 78999998876544 55666654
No 237
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.43 E-value=0.16 Score=49.26 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=20.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.||||+||| |++..+.+.+
T Consensus 5 ~~~I~l~G~~GsGKs------T~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKG------TQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHH------HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHh
Confidence 456899999999999 8887776644
No 238
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.38 E-value=0.16 Score=48.29 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=20.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.||||+||| |++..+.+.+
T Consensus 18 ~~~I~l~G~~GsGKS------Tla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKS------SVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHH------HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHh
Confidence 347899999999999 8877776654
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.31 E-value=0.11 Score=60.99 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHhc-------------cCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 425 DSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 425 N~~Q~~AV~~iL~~-------------~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
.+.|++.+...+.. .....++|+|||||||| |++.++...
T Consensus 209 ~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKT------tLarala~~ 261 (806)
T 1ypw_A 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT------LIARAVANE 261 (806)
T ss_dssp CSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHH------HHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHH------HHHHHHHHH
Confidence 56677766666542 12456999999999999 777777653
No 240
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.26 E-value=0.15 Score=47.77 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=20.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.||||+||| |++..+.+.+
T Consensus 9 ~~~I~l~G~~GsGKs------T~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKG------TQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHH------HHHHHHHHHH
T ss_pred CCEEEEECCCCCCHH------HHHHHHHHHh
Confidence 457899999999999 7777776544
No 241
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.17 E-value=0.16 Score=47.36 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=18.7
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.++|.||||+||| |++..+.+.+
T Consensus 6 ~I~l~G~~GsGKS------T~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKG------TQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 5789999999999 7777776544
No 242
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.13 E-value=0.3 Score=53.27 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=25.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
..++|.|+||+||| ++++.+...+.+. +.+|++++
T Consensus 100 ~vI~ivG~~GvGKT-----Tla~~La~~l~~~--G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKT-----TTAAKLARYIQKR--GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTT-----HHHHHHHHHHHHH--HCCEEEEC
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEe
Confidence 36789999999999 6766666655544 66777664
No 243
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.07 E-value=0.14 Score=49.20 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=16.5
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
++|.||||+||| |++..+.+
T Consensus 3 I~l~G~~GsGKs------T~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKG------TQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHH------HHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 578999999999 77776654
No 244
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.07 E-value=0.53 Score=51.03 Aligned_cols=61 Identities=8% Similarity=-0.043 Sum_probs=41.4
Q ss_pred HHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 431 AVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 431 AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
.+..++++ .....++|.|+||+||| .....++..+... .+.+|++.+...++ +.+..|+..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT-----~lal~ia~~~a~~-~g~~vl~~slE~~~-~~l~~R~~~ 250 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKT-----AFALTIAQNAALK-EGVGVGIYSLEMPA-AQLTLRMMC 250 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHH-----HHHHHHHHHHHHT-TCCCEEEEESSSCH-HHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHH-----HHHHHHHHHHHHh-CCCeEEEEECCCCH-HHHHHHHHH
Confidence 35556643 34568999999999999 5555555555442 36789998877554 466677654
No 245
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.06 E-value=0.16 Score=48.77 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=17.5
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++|.||||+||| |++..+.+-+
T Consensus 3 I~l~G~~GsGKs------T~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKG------TQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 578999999999 7777765533
No 246
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.05 E-value=0.14 Score=47.60 Aligned_cols=24 Identities=4% Similarity=-0.155 Sum_probs=18.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.|+||+||| |++..+.+.+
T Consensus 4 ~~I~l~G~~GsGKs------T~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKG------TQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHh
Confidence 35789999999999 7777665533
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.05 E-value=0.12 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=18.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
...++|.||||+||| |++.++..
T Consensus 9 g~~i~l~G~~GsGKS------Tl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKS------TIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHH------HHHHHHHT
T ss_pred CeEEEEECCCCCCHH------HHHHHHHh
Confidence 347899999999999 77777654
No 248
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.92 E-value=0.18 Score=47.96 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=19.4
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.||||+||| |++..+.+.+
T Consensus 21 ~~I~l~G~~GsGKS------T~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKG------TQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHh
Confidence 35789999999999 7787776644
No 249
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.89 E-value=0.18 Score=48.72 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=19.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.||||+||| |++..+.+.+
T Consensus 4 ~~~I~l~G~~GsGKs------T~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKG------TQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHH------HHHHHHHHHc
Confidence 346789999999999 8887776644
No 250
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.84 E-value=0.5 Score=46.34 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=32.2
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeE-EEEccChhhHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI-LICAPWNRTCDKLMECLM 497 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rI-LVcApSNsAaD~l~~rL~ 497 (651)
..++|.||+|+||| |+++.+.+.+.. .+..| +.--|.....-..++++.
T Consensus 7 ~~i~~eG~~gsGKs------T~~~~l~~~l~~-~~~~v~~~~~p~~~~~g~~i~~~l 56 (213)
T 4edh_A 7 LFVTLEGPEGAGKS------TNRDYLAERLRE-RGIEVQLTREPGGTPLAERIRELL 56 (213)
T ss_dssp EEEEEECSTTSSHH------HHHHHHHHHHHT-TTCCEEEEESSCSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHH------HHHHHHHHHHHH-cCCCcccccCCCCCHHHHHHHHHH
Confidence 46789999999999 777878777775 34444 444565544444444444
No 251
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.69 E-value=0.18 Score=46.67 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=19.3
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.||+|+||| |++.++...+
T Consensus 9 ~~i~l~G~~GsGKS------Tl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKS------AVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHH------HHHHHHHHHH
T ss_pred cEEEEEcCCCCCHH------HHHHHHHHhh
Confidence 36789999999999 7777776544
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.67 E-value=0.22 Score=57.57 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.6
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+++++|||||||| +++.++...+
T Consensus 490 ~~ll~G~~GtGKT------~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKT------EVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCcHH------HHHHHHHHHh
Confidence 6899999999999 7777777665
No 253
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.65 E-value=0.49 Score=46.24 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 424 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
-+..|+.|+..+-. ...+.|.||.|+||| |+..++.-+
T Consensus 8 k~~g~~~~l~~i~~---Ge~~~liG~nGsGKS------TLl~~l~Gl 45 (208)
T 3b85_A 8 KTLGQKHYVDAIDT---NTIVFGLGPAGSGKT------YLAMAKAVQ 45 (208)
T ss_dssp CSHHHHHHHHHHHH---CSEEEEECCTTSSTT------HHHHHHHHH
T ss_pred CCHhHHHHHHhccC---CCEEEEECCCCCCHH------HHHHHHhcC
Confidence 36778889988744 457889999999999 888888766
No 254
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.60 E-value=0.27 Score=50.74 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=25.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...++|.||+|+||| +++..+.. .+....+.+|++++
T Consensus 105 g~vi~lvG~~GsGKT-----Tl~~~LA~-~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKT-----TTLAKLAA-ISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHH-----HHHHHHHH-HHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHH-----HHHHHHHH-HHHHhcCCEEEEEe
Confidence 346889999999999 55555544 44433477777765
No 255
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.60 E-value=0.43 Score=49.47 Aligned_cols=60 Identities=5% Similarity=0.064 Sum_probs=33.9
Q ss_pred HHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC----CCCeEEEEccChh-hHHHHHHHH
Q 006311 432 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----PKSRILICAPWNR-TCDKLMECL 496 (651)
Q Consensus 432 V~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~----~~~rILVcApSNs-AaD~l~~rL 496 (651)
+..+|++ .....++|.||||+||| +....++....... .+.+++..+-.+. -.+.+.++.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT-----~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKT-----QLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHH-----HHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHh-----HHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4556643 34568999999999999 44434333322110 0557777666553 244444443
No 256
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.59 E-value=0.29 Score=46.64 Aligned_cols=45 Identities=7% Similarity=0.038 Sum_probs=30.3
Q ss_pred CCCCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 419 YSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 419 ~~~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
|....++..++.+... .....+.|.||+|+||| |++.++...+..
T Consensus 7 ~~~~~~~~~~~~~~~~----~~g~~i~l~G~sGsGKS------Tl~~~La~~l~~ 51 (200)
T 3uie_A 7 WHECSVEKVDRQRLLD----QKGCVIWVTGLSGSGKS------TLACALNQMLYQ 51 (200)
T ss_dssp ---CCCCHHHHHHHHT----SCCEEEEEECSTTSSHH------HHHHHHHHHHHH
T ss_pred ccccccCHHHHHHhcC----CCCeEEEEECCCCCCHH------HHHHHHHHHHHh
Confidence 3334567777655432 22456789999999999 888888877763
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.58 E-value=0.19 Score=48.09 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=20.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+++|.||+|+||| |++..+.+.+
T Consensus 12 ~~~i~l~G~sGsGKs------Tl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKG------TLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHH------HHHHHHHHHC
T ss_pred CCEEEEECCCCCCHH------HHHHHHHHhC
Confidence 568899999999999 7777765533
No 258
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.57 E-value=0.17 Score=47.50 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=20.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.||||+||| |++..+.+.+
T Consensus 12 ~~~I~l~G~~GsGKs------T~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKG------TQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHH------HHHHHHHHHH
T ss_pred CCEEEEECCCCCCHH------HHHHHHHHHh
Confidence 457889999999999 7877776644
No 259
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.55 E-value=0.37 Score=47.62 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=25.2
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
..++|.||||+||| |++..+.+.+.. +..++..
T Consensus 27 ~~i~i~G~~GsGKs------T~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKT------TVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHH------HHHHHHHHHHTT--TSCEEEE
T ss_pred eEEEEEcCCCCCHH------HHHHHHHHHHhc--CCCceee
Confidence 46789999999999 888888887764 4455433
No 260
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.52 E-value=0.2 Score=45.95 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=19.0
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.++|.|+||+||| |++..+.+.+
T Consensus 4 ~I~l~G~~GsGKs------T~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMT------TVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHH------HHHHHHHHHH
T ss_pred eEEEECCCCCCHH------HHHHHHHHHh
Confidence 5789999999999 7777776644
No 261
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.51 E-value=0.26 Score=49.40 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=23.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEE
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL 480 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rIL 480 (651)
..++|.|+||+||| |++..+.+.+.. .+..++
T Consensus 5 ~lIvl~G~pGSGKS------Tla~~La~~L~~-~g~~~i 36 (260)
T 3a4m_A 5 MLIILTGLPGVGKS------TFSKNLAKILSK-NNIDVI 36 (260)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHHHH-TTCCEE
T ss_pred EEEEEEcCCCCCHH------HHHHHHHHHHHh-CCCEEE
Confidence 46789999999999 777777766553 244444
No 262
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.49 E-value=0.12 Score=58.57 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=17.6
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
++|+.|||||||| +++.++..
T Consensus 329 ~vLL~GppGtGKT------~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKS------QMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHH------HHHHSSST
T ss_pred ceEEECCCchHHH------HHHHHHHH
Confidence 8999999999999 66666654
No 263
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.38 E-value=0.38 Score=50.49 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=34.2
Q ss_pred HHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC----CCCeEEEEccChh-hHHHHHHHH
Q 006311 432 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----PKSRILICAPWNR-TCDKLMECL 496 (651)
Q Consensus 432 V~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~----~~~rILVcApSNs-AaD~l~~rL 496 (651)
+..+|++ .....++|.||||+||| +....++....... .+.+++..+-.+. ..+.+.++.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKT-----tla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~ 177 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKT-----QLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 177 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHH-----HHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHH-----HHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4555642 33458899999999999 44433333322210 2557777666554 344555444
No 264
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.38 E-value=0.24 Score=58.33 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=21.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
.+++|.|||||||| +++.++.+.+..
T Consensus 589 ~~vLl~Gp~GtGKT------~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKT------ELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHH------HHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHhcC
Confidence 37899999999999 788888777653
No 265
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.36 E-value=0.19 Score=47.17 Aligned_cols=24 Identities=4% Similarity=-0.014 Sum_probs=19.3
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.++|.|+||+||| |++..+.+.+.
T Consensus 2 ~I~i~G~~GsGKs------T~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKS------TISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHHC
T ss_pred EEEEECCCccCHH------HHHHHHHHhcC
Confidence 3689999999999 88887776553
No 266
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.23 E-value=0.19 Score=47.43 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=18.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
...++|.|+|||||| |++.++.+.
T Consensus 10 ~~~I~l~G~~GsGKS------Tv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKT------SMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHH------HHHHHHHHH
T ss_pred CCEEEEECCCCCCHH------HHHHHHHHh
Confidence 346899999999999 777766553
No 267
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.93 E-value=0.19 Score=46.64 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=18.8
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.|+||+||| |++..+.+.+
T Consensus 7 ~~I~l~G~~GsGKs------T~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKG------TQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHH------HHHHHHHHHH
T ss_pred cEEEEECCCCCCHH------HHHHHHHHHh
Confidence 35789999999999 7777766543
No 268
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.86 E-value=0.22 Score=47.31 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=21.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
...++|.|+||+||| |++..+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKS------T~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKS------TQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHH------HHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHH------HHHHHHHHHHHH
Confidence 346889999999999 888887776654
No 269
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.84 E-value=0.2 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=17.9
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
.++|.|||||||| |++..+..-
T Consensus 3 li~I~G~~GSGKS------Tla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKT------DMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHH
T ss_pred EEEEECCCCcCHH------HHHHHHHhc
Confidence 5789999999999 777776553
No 270
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.76 E-value=0.26 Score=49.15 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=19.0
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.||||+||| |++..+.+.+
T Consensus 33 ~~i~l~G~~GsGKS------Tla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKT------TIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTH------HHHHHHHHHT
T ss_pred eEEEEECCCCCCHH------HHHHHHHHhc
Confidence 35789999999999 7777776543
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.74 E-value=0.24 Score=47.85 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=16.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAV 467 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI 467 (651)
.|.+|.||.|+||| ||+..+
T Consensus 2 RpIVi~GPSG~GK~------Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKS------TLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHH------HHHHHH
T ss_pred CEEEEECCCCCCHH------HHHHHH
Confidence 58999999999999 665544
No 272
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=87.62 E-value=0.22 Score=47.36 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=19.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+.|.||+|+||| |++.++..++.
T Consensus 2 ~i~l~G~nGsGKT------TLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKT------TLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHHG
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhC
Confidence 3679999999999 77777776664
No 273
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.58 E-value=0.24 Score=48.47 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=19.6
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.|+|||||| |++.++.+.+
T Consensus 17 ~~I~l~G~~GsGKs------T~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKG------TQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHh
Confidence 46789999999999 8877776654
No 274
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.39 E-value=0.21 Score=49.54 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=19.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+..++|.||||+||| |++..+.+.+
T Consensus 29 ~~~I~l~G~~GsGKs------T~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKG------TQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHH------HHHHHHHHHh
Confidence 335789999999999 8877776543
No 275
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.28 E-value=0.49 Score=49.75 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=25.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
...+.|.|+||+||| +++..++..+.. .+.+|++.+-
T Consensus 79 ~~~I~i~G~~G~GKS-----Tl~~~L~~~l~~--~g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKS-----TAIEALGMHLIE--RGHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHH-----HHHHHHHHHHHT--TTCCEEEEEE
T ss_pred ceEEEEECCCCCCHH-----HHHHHHHHHHHh--CCCceEEEec
Confidence 346789999999999 555555544433 3777777654
No 276
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.22 E-value=0.21 Score=48.64 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=18.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
...++|.||||+||| |++..+.+
T Consensus 7 ~~~I~l~G~~GsGKs------T~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKG------TVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHH------HHHHHHHH
T ss_pred CcEEEEECCCCCCHH------HHHHHHHH
Confidence 456899999999999 77776654
No 277
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.20 E-value=0.26 Score=48.57 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=20.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+..++|.||||+||| |++.++.+.+
T Consensus 27 ~~~i~l~G~~GsGKS------Tl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKG------TVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHH------HHHHHHHHHh
Confidence 457899999999999 8877776544
No 278
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.14 E-value=0.42 Score=45.55 Aligned_cols=40 Identities=10% Similarity=-0.008 Sum_probs=27.4
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRT 488 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsA 488 (651)
+.+.|.|++|+||| |+++.+...++. .+.+|-+..+....
T Consensus 5 ~~i~i~G~sGsGKT------Tl~~~L~~~l~~-~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 5 NVWQVVGYKHSGKT------TLMEKWVAAAVR-EGWRVGTVKHHGHG 44 (169)
T ss_dssp CEEEEECCTTSSHH------HHHHHHHHHHHH-TTCCEEEEECCC--
T ss_pred EEEEEECCCCCCHH------HHHHHHHHhhHh-cCCeeeEEEeCCCC
Confidence 46789999999999 666666665654 36677777665543
No 279
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.13 E-value=0.22 Score=47.93 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=18.0
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++|.||||+||| |++..+.+.+
T Consensus 3 I~l~G~~GsGKs------T~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKG------TQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHH------HHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 589999999999 8877776544
No 280
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.12 E-value=0.25 Score=48.22 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=18.5
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.++|.||||+||| |++..+.+.+
T Consensus 2 ~I~l~G~~GsGKs------T~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKG------TQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 3689999999999 7777776544
No 281
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.04 E-value=0.26 Score=45.34 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=19.8
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..++|.|+|||||| |++..+.+.+.
T Consensus 8 ~~i~l~G~~GsGKS------Tva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKS------SLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHH------HHHHHHHHHHT
T ss_pred ceEEEECCCCCCHH------HHHHHHHHHhC
Confidence 36789999999999 88877765443
No 282
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.94 E-value=0.76 Score=45.69 Aligned_cols=51 Identities=6% Similarity=-0.038 Sum_probs=29.1
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC---CCCeE-EEEccChhhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---PKSRI-LICAPWNRTCDKLMECLM 497 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~---~~~rI-LVcApSNsAaD~l~~rL~ 497 (651)
...++|.||+|+||| |+++.+.+.+... .+..| +.--|.....-..++++.
T Consensus 25 g~~I~~eG~~GsGKs------T~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l 79 (227)
T 3v9p_A 25 GKFITFEGIDGAGKT------THLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREIL 79 (227)
T ss_dssp CCEEEEECCC---CH------HHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHH
Confidence 457889999999999 8888887777642 03444 344465444433344443
No 283
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.92 E-value=0.27 Score=44.94 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=18.5
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.++|.|+||+||| |++..+.+.+
T Consensus 2 ~I~l~G~~GsGKs------T~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKS------TVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHH------HHHHHHHHHH
T ss_pred eEEEECCCCCCHH------HHHHHHHHHh
Confidence 3689999999999 7777776644
No 284
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.84 E-value=0.39 Score=48.70 Aligned_cols=29 Identities=14% Similarity=-0.003 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCC
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFV 455 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT 455 (651)
-+.+.+.+...+.. .+.++|.||+|+|||
T Consensus 17 R~~el~~L~~~l~~--~~~v~i~G~~G~GKT 45 (350)
T 2qen_A 17 REEESRKLEESLEN--YPLTLLLGIRRVGKS 45 (350)
T ss_dssp CHHHHHHHHHHHHH--CSEEEEECCTTSSHH
T ss_pred hHHHHHHHHHHHhc--CCeEEEECCCcCCHH
Confidence 35566777776653 268999999999999
No 285
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.84 E-value=0.46 Score=52.25 Aligned_cols=57 Identities=12% Similarity=0.027 Sum_probs=38.5
Q ss_pred HHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 435 ILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 435 iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
++++ .....++|.|+||+||| .....++..+... .+.+|++.+--.++ +.+..|+..
T Consensus 235 ~lgGl~~G~l~li~G~pG~GKT-----~lal~~a~~~a~~-~g~~vl~~s~E~s~-~~l~~r~~~ 292 (503)
T 1q57_A 235 KTLGARGGEVIMVTSGSGMVMS-----TFVRQQALQWGTA-MGKKVGLAMLEESV-EETAEDLIG 292 (503)
T ss_dssp HHCCCCTTCEEEEEESSCHHHH-----HHHHHHHHHHTTT-SCCCEEEEESSSCH-HHHHHHHHH
T ss_pred hhcccCCCeEEEEeecCCCCch-----HHHHHHHHHHHHh-cCCcEEEEeccCCH-HHHHHHHHH
Confidence 4443 33568999999999999 5555555554432 26789998886664 466666653
No 286
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.84 E-value=0.79 Score=45.84 Aligned_cols=50 Identities=10% Similarity=0.047 Sum_probs=32.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCe--EEEEccChhhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSR--ILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~r--ILVcApSNsAaD~l~~rL~ 497 (651)
...++|.||+|+||| |+++.+.+.+... +.. ++.-.|+.+..-..++.++
T Consensus 27 ~~~i~~eG~~GsGKs------T~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKS------TAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHH------HHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHH
Confidence 457889999999999 7777777777653 333 4445565554444444443
No 287
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.83 E-value=0.26 Score=47.50 Aligned_cols=24 Identities=33% Similarity=0.263 Sum_probs=18.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
...++|.||+|+||| |++.++...
T Consensus 8 g~~i~l~GpsGsGKs------Tl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKG------TVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHH------HHHHHHHHS
T ss_pred CcEEEEECcCCCCHH------HHHHHHHhh
Confidence 457889999999999 766666543
No 288
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.80 E-value=0.39 Score=46.13 Aligned_cols=39 Identities=8% Similarity=-0.007 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 424 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
....++.... ......++|.|+||+||| |++..+.+.+.
T Consensus 12 ~~~~~r~~~~----~~~~~~i~~~G~~GsGKs------T~~~~l~~~l~ 50 (211)
T 1m7g_A 12 LTRSERTELR----NQRGLTIWLTGLSASGKS------TLAVELEHQLV 50 (211)
T ss_dssp CCHHHHHHHH----TSSCEEEEEECSTTSSHH------HHHHHHHHHHH
T ss_pred cCHHHhhccc----CCCCCEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 3455555532 222346789999999999 88888777665
No 289
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.79 E-value=0.26 Score=46.45 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=19.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...++|.||||+||| |++..+.+.+
T Consensus 4 ~~~I~l~G~~GsGKs------T~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKT------TQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHH------HHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHH------HHHHHHHHHH
Confidence 346789999999999 7777766543
No 290
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.79 E-value=0.24 Score=47.99 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=19.3
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.|+||+||| |++..+.+.+
T Consensus 6 ~~I~l~G~~GsGKs------T~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKG------TQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHH------HHHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHh
Confidence 35789999999999 8887776644
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.77 E-value=0.24 Score=46.50 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=17.1
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.++|.||+|+||| |++.++..
T Consensus 4 ii~l~G~~GaGKS------Tl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKS------TTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCCcHH------HHHHHHhc
Confidence 5789999999999 77776653
No 292
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.74 E-value=0.27 Score=46.39 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=20.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...+.|.||+|+||| |++.++...+
T Consensus 6 g~~i~l~G~~GsGKS------Tl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKG------TVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHH------HHHHHHHHCT
T ss_pred CCEEEEECCCCCCHH------HHHHHHHHhh
Confidence 347889999999999 7777776544
No 293
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.69 E-value=0.62 Score=45.07 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=18.5
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
....+.|.||+|+||| |++.++.
T Consensus 29 ~G~~~~l~GpnGsGKS------TLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKT------TFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHH------HHHHHHH
T ss_pred CCcEEEEEeCCCCCHH------HHHHHHH
Confidence 3568999999999999 6666555
No 294
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.55 E-value=0.19 Score=58.90 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=21.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...++++|||||||| +++.++...+.
T Consensus 511 ~~~vLL~GppGtGKT------~Lakala~~~~ 536 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKT------LLAKAIANECQ 536 (806)
T ss_dssp CCCCCCBCCTTSSHH------HHHHHHHHHHT
T ss_pred CceeEEECCCCCCHH------HHHHHHHHHhC
Confidence 345899999999999 88888887664
No 295
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=86.36 E-value=0.37 Score=46.32 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=22.1
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
..+.|.||+|+||| |++.++..++..
T Consensus 23 ~~v~I~G~sGsGKS------Tl~~~l~~~~~~ 48 (208)
T 3c8u_A 23 QLVALSGAPGSGKS------TLSNPLAAALSA 48 (208)
T ss_dssp EEEEEECCTTSCTH------HHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHHhh
Confidence 46789999999999 888888887774
No 296
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.25 E-value=0.39 Score=48.81 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCC
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFV 455 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT 455 (651)
-+.+.+.+.. +.. +.++|.||+|+|||
T Consensus 18 R~~el~~L~~-l~~---~~v~i~G~~G~GKT 44 (357)
T 2fna_A 18 REKEIEKLKG-LRA---PITLVLGLRRTGKS 44 (357)
T ss_dssp CHHHHHHHHH-TCS---SEEEEEESTTSSHH
T ss_pred hHHHHHHHHH-hcC---CcEEEECCCCCCHH
Confidence 3556677777 662 68999999999999
No 297
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.25 E-value=0.41 Score=49.79 Aligned_cols=34 Identities=6% Similarity=0.003 Sum_probs=23.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.++|.||+|+||| +|+..+.. .+.. .+.+|++.+
T Consensus 106 vi~ivG~~GsGKT-----Tl~~~LA~-~l~~-~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKT-----TSCGKLAK-MFVD-EGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHH-----HHHHHHHH-HHHH-TTCCEEEEE
T ss_pred EEEEEcCCCChHH-----HHHHHHHH-HHHh-cCCEEEEEc
Confidence 5789999999999 66655554 4443 256666644
No 298
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.16 E-value=0.25 Score=46.85 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=17.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
..++|.||||+||| |++..+.+
T Consensus 16 ~~I~l~G~~GsGKs------T~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKG------TQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHH------HHHHHHHH
T ss_pred cEEEEECCCCCCHH------HHHHHHHH
Confidence 35789999999999 77766654
No 299
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.15 E-value=0.66 Score=44.31 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=25.0
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
..+.|.||+|+||| |++.++...+... +..|.+.
T Consensus 23 ~~i~i~G~~GsGKs------tl~~~l~~~~~~~-~~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGLSRSGKT------TLANQLSQTLREQ-GISVCVF 56 (201)
T ss_dssp EEEEEEECTTSSHH------HHHHHHHHHHHHT-TCCEEEE
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHHhhc-CCeEEEe
Confidence 46789999999999 7778777777642 4455543
No 300
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.10 E-value=0.38 Score=50.74 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=24.9
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+..+|+. .....+.|.||||+||| |++..+...+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKT------TL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKT------QLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHH------HHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHH------HHHHHHHHHh
Confidence 45666754 34568999999999999 6666555444
No 301
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.08 E-value=0.51 Score=44.99 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCC
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFV 455 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT 455 (651)
|.++.+.+...+...+.+.++|.|++|+|||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKT 44 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKT 44 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHH
Confidence 4556666665554334567889999999999
No 302
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.05 E-value=0.33 Score=45.83 Aligned_cols=23 Identities=9% Similarity=0.237 Sum_probs=19.0
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
..+.|.||+|+||| |++.++..+
T Consensus 8 ~ii~l~Gp~GsGKS------Tl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKT------SLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHH------HHHHHHHHH
T ss_pred cEEEEECcCCCCHH------HHHHHHHhh
Confidence 47889999999999 777777654
No 303
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.00 E-value=0.48 Score=50.74 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=24.4
Q ss_pred HHHHHHH-hccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 430 SAVHQIL-SFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 430 ~AV~~iL-~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.++..+- +......++|.|||||||| |++.++....
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKS------Tl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKT------TLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHH------HHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHH------HHHHHHHhhc
Confidence 4444442 2234558899999999999 7777776543
No 304
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=85.97 E-value=0.33 Score=45.63 Aligned_cols=25 Identities=8% Similarity=0.123 Sum_probs=19.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+++|.||+|+||| |++.++...+
T Consensus 5 g~~i~i~GpsGsGKS------TL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRR------HIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHH------HHHHHHHHHC
T ss_pred CCEEEEECCCCCCHH------HHHHHHHhhC
Confidence 357899999999999 7777766543
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.88 E-value=0.31 Score=46.85 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=19.4
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+.|.||+|+||| |++.++...+
T Consensus 6 ~~i~i~G~~GsGKS------Tl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKG------TLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHh
Confidence 35789999999999 8888776644
No 306
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.86 E-value=0.28 Score=45.20 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=21.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
++..+|.||.|+||| ||.+||..++.
T Consensus 23 ~g~~~I~G~NGsGKS------til~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKS------SLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHH------HHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHH------HHHHHHHHHHc
Confidence 457899999999999 88888876654
No 307
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.75 E-value=0.72 Score=44.00 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=24.0
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+..++.+ .....+.|.||+|+||| |++..+...+
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKS------Tll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKT------QLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHH------HHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHH------HHHHHHHHHH
Confidence 34555632 23458999999999999 6666665433
No 308
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=85.68 E-value=0.72 Score=50.05 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=27.8
Q ss_pred HHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCC
Q 006311 429 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK 476 (651)
Q Consensus 429 ~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~ 476 (651)
..||...+-..+-.-.+|+|||||||| +.+.+++.++.+.+++
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT-----~Ll~~Ia~~i~~~~~d 205 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKT-----TILKEIANGIAENHPD 205 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHH-----HHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccCCceEEEecCCCCChh-----HHHHHHHHHHhhcCCC
Confidence 456666543223346799999999999 6666666665544333
No 309
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.65 E-value=0.59 Score=48.06 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=35.4
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh----------CCC----CeEEEEccChh-hHHHHH
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----------SPK----SRILICAPWNR-TCDKLM 493 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~----------~~~----~rILVcApSNs-AaD~l~ 493 (651)
.+..+|++ .....++|.||||+||| .....++...... ..+ .+++..+-.+. -.+.+.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT-----~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~ 160 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKT-----QIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM 160 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHH-----HHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH
Confidence 45566642 34568999999999999 4444443332110 112 57887776654 245555
Q ss_pred HHH
Q 006311 494 ECL 496 (651)
Q Consensus 494 ~rL 496 (651)
++.
T Consensus 161 ~~~ 163 (322)
T 2i1q_A 161 QMA 163 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 310
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.61 E-value=0.62 Score=49.30 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=33.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCD 490 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD 490 (651)
.+.++|.||+|+||| +++-.++.++.. .+.+|++.-+.+...+
T Consensus 35 ~~~~~i~G~~G~GKs-----~~~~~~~~~~~~--~~~~~~~~D~~~~~~~ 77 (392)
T 4ag6_A 35 NSNWTILAKPGAGKS-----FTAKMLLLREYM--QGSRVIIIDPEREYKE 77 (392)
T ss_dssp CCCEEEECCTTSSHH-----HHHHHHHHHHHT--TTCCEEEEESSCCSHH
T ss_pred cCceEEEcCCCCCHH-----HHHHHHHHHHHH--CCCEEEEEeCCcCHHH
Confidence 567899999999999 777666666654 3778999888776554
No 311
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.59 E-value=0.55 Score=60.14 Aligned_cols=58 Identities=9% Similarity=-0.047 Sum_probs=39.3
Q ss_pred HHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHH
Q 006311 432 VHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 496 (651)
Q Consensus 432 V~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL 496 (651)
+..+|+ + .+...++|+|||||||| +...+++.+..+ .+.+++..+..+.-...+++++
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT-----~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~a~~~ 1475 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKT-----TLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKL 1475 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHH-----HHHHHHHHHHHT--TTCCEEEECTTSCCCHHHHHHT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHHH--cCCcEEEEEcccccCHHHHHHc
Confidence 666776 3 45668999999999999 444455555444 3778888887776444444433
No 312
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=85.58 E-value=0.28 Score=51.79 Aligned_cols=15 Identities=7% Similarity=-0.011 Sum_probs=13.1
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
...++|.||||||||
T Consensus 123 gsviLI~GpPGsGKT 137 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKT 137 (331)
T ss_dssp SEEEEEECSCSSSHH
T ss_pred CcEEEEEcCCCCCHH
Confidence 346799999999999
No 313
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.58 E-value=0.6 Score=51.95 Aligned_cols=43 Identities=9% Similarity=0.068 Sum_probs=27.9
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc---ChhhHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP---WNRTCDKL 492 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp---SNsAaD~l 492 (651)
.++|.|+||+||| +++..++..+.+ .+.+|++++. .+.|.|.+
T Consensus 103 vI~ivG~~GvGKT-----Tl~~kLA~~l~~--~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 103 VIMFVGLQGSGKT-----TTCSKLAYYYQR--KGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp EEEEECSTTSSHH-----HHHHHHHHHHHH--TTCCEEEEEECCSSSHHHHHH
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHh--CCCeEEEEeccccchhHHHHH
Confidence 4678899999999 666555554443 2667766654 44555544
No 314
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.54 E-value=1.1 Score=44.05 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=33.6
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCe-EEEEccChhhHHHHHHHHHh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSR-ILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~r-ILVcApSNsAaD~l~~rL~~ 498 (651)
..++|.|++|+||| |.++.+.+.+....... ++.--|+.+.....++.+..
T Consensus 4 ~~i~~eG~~gsGKs------T~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKT------TARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHH------HHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 46789999999999 77777777777533224 44455565555555555543
No 315
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=85.48 E-value=0.37 Score=45.46 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=20.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.++.|.||.|+||| |++.++..++.
T Consensus 2 ~ii~l~GpsGaGKs------Tl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKS------TLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHH------HHHHHHHHHCG
T ss_pred CEEEEECCCCCCHH------HHHHHHHhhCC
Confidence 46889999999999 77777776654
No 316
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=85.42 E-value=0.79 Score=49.72 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCC
Q 006311 427 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS 477 (651)
Q Consensus 427 ~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~ 477 (651)
-=..||...+...+-.-..|+||+|+||| +.+..+..++.+.+++.
T Consensus 160 tGiraID~~~pi~rGQr~~IvG~sG~GKT-----tLl~~Iar~i~~~~~~v 205 (422)
T 3ice_A 160 LTARVLDLASPIGRGQRGLIVAPPKAGKT-----MLLQNIAQSIAYNHPDC 205 (422)
T ss_dssp HHHHHHHHHSCCBTTCEEEEECCSSSSHH-----HHHHHHHHHHHHHCTTS
T ss_pred ccceeeeeeeeecCCcEEEEecCCCCChh-----HHHHHHHHHHhhcCCCe
Confidence 34566665544333457899999999999 55444444444444444
No 317
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.30 E-value=0.29 Score=45.53 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+...+|.||.|+||| |+++||..++.
T Consensus 26 ~g~~~i~G~NGsGKS------tll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKS------NIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHH------HHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHH------HHHHHHHHHHc
Confidence 458899999999999 88898876654
No 318
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=84.77 E-value=0.4 Score=58.48 Aligned_cols=40 Identities=13% Similarity=0.293 Sum_probs=28.1
Q ss_pred CccEEEEecCCCCChHhHHHHHhcccc--CCCeEEEEeCCCCC
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGAPHNS 606 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~--~~~rvVLaGD~~QL 606 (651)
.|+||+|||+...+..+.-| |..++. .+..+++|||++|-
T Consensus 377 r~~~ilVDEfQDtn~~Q~~i-l~~L~~~~~~~~l~~VGD~kQS 418 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRI-FRRIWHHQPETALLLIGDPKQA 418 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHH-HHHHHTTCTTCEEEEEECGGGC
T ss_pred CCCEEEEECCccCCHHHHHH-HHHHHcCCCCCeEEEEECCccc
Confidence 49999999996555544333 332433 35689999999995
No 319
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.30 E-value=0.75 Score=49.26 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=30.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRT 488 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsA 488 (651)
....+|.||+|+||| +++..++.++++. +.+++|.=|....
T Consensus 53 ~~h~~i~G~tGsGKs-----~~~~~li~~~~~~--g~~viv~Dpkge~ 93 (437)
T 1e9r_A 53 PRHLLVNGATGTGKS-----VLLRELAYTGLLR--GDRMVIVDPNGDM 93 (437)
T ss_dssp GGCEEEEECTTSSHH-----HHHHHHHHHHHHT--TCEEEEEEETTHH
T ss_pred cceEEEECCCCCCHH-----HHHHHHHHHHHHC--CCcEEEEeCCCch
Confidence 457899999999999 8777777777764 5566666655544
No 320
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=83.76 E-value=0.39 Score=46.46 Aligned_cols=27 Identities=15% Similarity=0.000 Sum_probs=22.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
++..+|.||.|+||| ||.+||..++..
T Consensus 23 ~~~~~I~G~NgsGKS------til~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKS------SLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHH------HHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHH------HHHHHHHHHhcC
Confidence 458899999999999 888998877664
No 321
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=83.75 E-value=0.6 Score=49.56 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE
Q 006311 431 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 481 (651)
Q Consensus 431 AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV 481 (651)
.+..++.. ....++|.||.|+||| |+..++..++....+.+|+.
T Consensus 114 ~l~~l~~~-~~g~i~I~GptGSGKT------TlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 114 VFKRVSDV-PRGLVLVTGPTGSGKS------TTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp HHHHHHHC-SSEEEEEECSTTSCHH------HHHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHhC-CCCEEEEECCCCCCHH------HHHHHHHhcccCCCCcEEEE
Confidence 34444332 2458999999999999 55566666665433455543
No 322
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=83.62 E-value=0.22 Score=47.37 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=23.5
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 481 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV 481 (651)
.++|.||+|+||| |+++.+.+.+.. .+..|.+
T Consensus 2 ~I~i~G~~GsGKs------Tl~~~L~~~l~~-~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKR------TLVEKLSGAFRA-AGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHH------HHHHHHHHHHHE-EEEEEEE
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHHHh-cCCeEEE
Confidence 4689999999999 888888777763 2344443
No 323
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.61 E-value=0.99 Score=46.53 Aligned_cols=35 Identities=6% Similarity=0.025 Sum_probs=23.5
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
.+++.|++|+||| +++..+... +.. .+.+|++...
T Consensus 100 vi~i~G~~G~GKT-----T~~~~la~~-~~~-~g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKT-----TTAGKLAYF-YKK-KGFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTT-----HHHHHHHHH-HHH-TTCCEEEEEC
T ss_pred EEEEECCCCCCHH-----HHHHHHHHH-HHH-CCCeEEEEec
Confidence 5678899999999 666555544 443 3667766543
No 324
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=83.49 E-value=0.5 Score=45.24 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=20.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.++.|.||.|+||| |++.++..++.
T Consensus 5 ~~i~lvGpsGaGKS------TLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKS------TLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHH------HHHHHHHHHHT
T ss_pred CEEEEECCCCCCHH------HHHHHHHhhCc
Confidence 57899999999999 77777776653
No 325
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.44 E-value=0.65 Score=48.46 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=24.0
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.++|.||+|+||| +|++.+... +.. .+.+|++..
T Consensus 107 vI~ivG~~G~GKT-----T~~~~LA~~-l~~-~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKT-----TSLAKMANY-YAE-LGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHH-----HHHHHHHHH-HHH-TTCCEEEEE
T ss_pred EEEEECCCCCCHH-----HHHHHHHHH-HHH-CCCeEEEEe
Confidence 5788999999999 666665554 443 366777654
No 326
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=83.30 E-value=0.94 Score=50.31 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcc---CCCceEEeCcCCCCCCCCchhHHHHHHHHH----HHHhCCCCeEEEEccChh--hHHHHHHHH
Q 006311 426 SDSNSAVHQILSFE---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQ----IRRRSPKSRILICAPWNR--TCDKLMECL 496 (651)
Q Consensus 426 ~~Q~~AV~~iL~~~---~~~p~LI~GPPGTGKT~s~~~~TlveaI~q----ll~~~~~~rILVcApSNs--AaD~l~~rL 496 (651)
+...+.+...|... ....+.|+|++|.||| |||..+.. -++..-..++.||..... ....+...+
T Consensus 134 ~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKT------tLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 134 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKS------VIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHH------HHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCCceEEEEEcCCCCCHH------HHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 44555566555432 3457889999999999 77776663 233333557777765542 345555555
Q ss_pred Hh
Q 006311 497 MK 498 (651)
Q Consensus 497 ~~ 498 (651)
..
T Consensus 208 l~ 209 (549)
T 2a5y_B 208 LL 209 (549)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 327
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.27 E-value=0.41 Score=48.30 Aligned_cols=21 Identities=10% Similarity=-0.111 Sum_probs=17.1
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.++|.||||+||| |++..+.+
T Consensus 4 ~I~l~G~~GsGKS------T~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKS------TWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 5789999999999 77766654
No 328
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=83.20 E-value=0.49 Score=58.00 Aligned_cols=40 Identities=10% Similarity=0.228 Sum_probs=29.3
Q ss_pred CccEEEEecCCCCChHhHHHHHhccccC---CCeEEEEeCCCCC
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLANE---NTRVIVTGAPHNS 606 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~~---~~rvVLaGD~~QL 606 (651)
.|+||+|||+...+..+.- -|..++.. ..++++|||++|-
T Consensus 400 ~~~~IlVDEfQDt~~~Q~~-il~~L~~~~~~~~~l~~vGD~~Qs 442 (1232)
T 3u4q_A 400 QFHEVLVDEYQDTNLVQES-ILQLVTSGPEETGNLFMVGDVKQS 442 (1232)
T ss_dssp HCSEEEESSGGGCCHHHHH-HHHHHSCSCTTSSCEEEEECGGGC
T ss_pred CCCEEEEEccccCCHHHHH-HHHHHhcCCCCCCcEEEEeCchHH
Confidence 5999999999666655443 34435543 5689999999994
No 329
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=82.87 E-value=0.94 Score=43.30 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHhccCCCceEEeCcCCCCCC
Q 006311 425 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFV 455 (651)
Q Consensus 425 N~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT 455 (651)
|+.|.+.++..+......-++|.|.+|+|||
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKT 52 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKT 52 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHH
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHH
Confidence 5566666666554333456788899999999
No 330
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=82.86 E-value=0.82 Score=47.34 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=26.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
...+.|.||.|+||| |++..+..+++. .+.+|++.+.
T Consensus 102 g~vi~lvG~nGsGKT------Tll~~Lagll~~-~~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKT------TTIAKLGRYYQN-LGKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHH------HHHHHHHHHHHT-TTCCEEEECC
T ss_pred CeEEEEECCCCCcHH------HHHHHHHHHHHh-cCCEEEEEee
Confidence 347789999999999 666666666664 3567777654
No 331
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.80 E-value=0.71 Score=46.62 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=27.1
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
....++|.||.|+||| |+..++..++......+|++.-
T Consensus 24 ~g~~v~i~Gp~GsGKS------Tll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKS------TTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp SSEEEEEECSTTCSHH------HHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCEEEEECCCCccHH------HHHHHHHHhCCCCCCCEEEEcC
Confidence 3458999999999999 6667777766542245676643
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=82.58 E-value=0.46 Score=45.18 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=16.8
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.+.|.||+|+||| |++..+..
T Consensus 4 ~i~l~G~~GsGKS------T~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKT------TIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHH------HHHHHHHT
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4679999999999 77776654
No 333
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=82.45 E-value=0.69 Score=49.17 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=25.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...++|.||+|+||| |+..++..++......+|++.
T Consensus 136 g~~i~ivG~~GsGKT------Tll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 136 MGLILVTGPTGSGKS------TTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp SEEEEEECSSSSSHH------HHHHHHHHHHHHHSCCEEEEE
T ss_pred CCEEEEECCCCCCHH------HHHHHHHhhcCcCCCcEEEEe
Confidence 457899999999999 666666666654224677654
No 334
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=82.44 E-value=1 Score=59.28 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=14.1
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
..++|+.||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT 1281 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKT 1281 (2695)
T ss_dssp TCEEEEECSTTSSHH
T ss_pred CCeEEEECCCCCCHH
Confidence 569999999999999
No 335
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.17 E-value=0.46 Score=45.01 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=17.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.+.|.||+|+||| |++..+..
T Consensus 3 ~i~i~G~~GsGKS------Tl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKS------TVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCcCHH------HHHHHHHH
Confidence 4679999999999 77777765
No 336
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=82.13 E-value=0.62 Score=43.47 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=16.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREA 466 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~Tlvea 466 (651)
...+.|.||+|+||| |++.+
T Consensus 9 gei~~l~G~nGsGKS------Tl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKS------TFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHH------HHHHH
T ss_pred CEEEEEECCCCCCHH------HHHHH
Confidence 347889999999999 66664
No 337
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=82.11 E-value=0.57 Score=43.51 Aligned_cols=26 Identities=15% Similarity=-0.042 Sum_probs=20.9
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
..++|.|++|+||| |++.++...+..
T Consensus 6 ~~i~l~G~~GsGKS------T~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKT------TVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHH------HHHHHHHHHHhh
Confidence 46789999999999 777877776653
No 338
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=82.06 E-value=0.91 Score=43.18 Aligned_cols=37 Identities=3% Similarity=-0.185 Sum_probs=24.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
.+.+.|.||+|+||| |+++.+...+.. .+.+|-+...
T Consensus 6 ~~~i~i~G~sGsGKT------Tl~~~l~~~l~~-~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKT------TLLKKLIPALCA-RGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHH------HHHHHHHHHHHH-TTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHH------HHHHHHHHhccc-cCCceeEEee
Confidence 457889999999999 565666555553 3455554443
No 339
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.39 E-value=1 Score=56.87 Aligned_cols=58 Identities=7% Similarity=-0.058 Sum_probs=38.5
Q ss_pred HHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 431 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 431 AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
.+..+|+ + .....++|.|||||||| .....++...++. +.+++..+-....-+..+++
T Consensus 21 ~LD~lL~~GGi~~G~i~lI~G~pGsGKT-----~LAlqla~~~~~~--G~~vlYI~te~~~~~l~~~~ 81 (1706)
T 3cmw_A 21 SLDIALGAGGLPMGRIVEIYGPESSGKT-----TLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARK 81 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEECTTSCCCHHHHHH
T ss_pred HHHHHhhcCCcCCCeEEEEECCCCCCHH-----HHHHHHHHHHhhC--CCceEEEEecCccHHHHHHh
Confidence 4555664 2 34568999999999999 4444444554543 67888887777655555443
No 340
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.29 E-value=1.4 Score=48.79 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=36.5
Q ss_pred HHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 432 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 432 V~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
+..+|+. .....++|.||||+||| |++..+...... .+.+++..++.+... .+..+
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKS------TLl~~l~g~~~~-~G~~vi~~~~ee~~~-~l~~~ 327 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKT------LLVSRFVENACA-NKERAILFAYEESRA-QLLRN 327 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHH------HHHHHHHHHHHT-TTCCEEEEESSSCHH-HHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHH------HHHHHHHHHHHh-CCCCEEEEEEeCCHH-HHHHH
Confidence 4556653 34568999999999999 666666655553 366777776665533 34433
No 341
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.06 E-value=1.1 Score=56.75 Aligned_cols=58 Identities=7% Similarity=-0.058 Sum_probs=38.6
Q ss_pred HHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 431 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 431 AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
.+..+|+ + .....++|.||||+||| +....++....+. +.++++.+...+.....+++
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKT-----tLaLq~a~~~~~~--G~~vlyis~E~s~~~~~a~~ 430 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKT-----TLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARK 430 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEECTTSCCCHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHH-----HHHHHHHHHHHHh--CCCeEEEEccCchHHHHHHH
Confidence 3555554 2 34568999999999999 5555666555553 66777777776665554443
No 342
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=81.05 E-value=1 Score=46.59 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=25.3
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
..+.|.||.|+||| |++..+..+++. .+.+|++.+.
T Consensus 101 ~vi~lvG~nGsGKT------Tll~~Lag~l~~-~~g~V~l~g~ 136 (302)
T 3b9q_A 101 AVIMIVGVNGGGKT------TSLGKLAHRLKN-EGTKVLMAAG 136 (302)
T ss_dssp EEEEEECCTTSCHH------HHHHHHHHHHHH-TTCCEEEECC
T ss_pred cEEEEEcCCCCCHH------HHHHHHHHHHHH-cCCeEEEEee
Confidence 36789999999999 555555556664 3567777653
No 343
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.98 E-value=1.1 Score=57.43 Aligned_cols=58 Identities=7% Similarity=-0.058 Sum_probs=41.3
Q ss_pred HHHHHHh-c--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHH
Q 006311 431 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 495 (651)
Q Consensus 431 AV~~iL~-~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~r 495 (651)
++..+++ . .....++|.|||||||| +....++.+..++ +.+++..+..+...+.++.+
T Consensus 1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT-----~la~~~~~ea~k~--Ge~~~Fit~ee~~~~L~a~~ 1128 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGRIVEIYGPESSGKT-----TLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARK 1128 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHH-----HHHHHHHHHHHTT--TCCEEEECTTSCCCHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEEccccHHHHHHHH
Confidence 3456663 2 35678999999999999 5555556665554 88999998888766666443
No 344
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.96 E-value=0.66 Score=43.68 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=18.8
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.+.|.|++|+||| |++..+...+
T Consensus 4 ~i~i~G~~GsGKs------t~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKS------SVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHhc
Confidence 5789999999999 8887776544
No 345
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=80.84 E-value=0.99 Score=47.26 Aligned_cols=37 Identities=8% Similarity=-0.046 Sum_probs=27.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
...+.|.||||+||| |+..++..++.. .+.+|.+.+.
T Consensus 55 g~~v~i~G~~GaGKS------TLl~~l~g~~~~-~~g~v~i~~~ 91 (337)
T 2qm8_A 55 AIRVGITGVPGVGKS------TTIDALGSLLTA-AGHKVAVLAV 91 (337)
T ss_dssp SEEEEEECCTTSCHH------HHHHHHHHHHHH-TTCCEEEEEE
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHhhhh-CCCEEEEEEE
Confidence 457889999999999 777777766654 3567777664
No 346
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=80.52 E-value=0.69 Score=44.95 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=14.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHH-HHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVL-QIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~-qll 471 (651)
...+.|.||.|+||| |++.++. .++
T Consensus 27 G~ii~l~Gp~GsGKS------Tl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKT------TVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----------CHHHHHHC---
T ss_pred CCEEEEECCCCCCHH------HHHHHHHhcCC
Confidence 457889999999999 7777776 554
No 347
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=80.23 E-value=1.3 Score=46.03 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=26.1
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
....+.|.||+|+||| |++.++..++ ..+|++..
T Consensus 125 ~Ge~vaIvGpsGsGKS------TLl~lL~gl~----~G~I~~~v 158 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKS------MLCNSLIHFL----GGSVLSFA 158 (305)
T ss_dssp TCSEEEEECSSSSSHH------HHHHHHHHHH----TCEEECGG
T ss_pred CCCEEEEECCCCCcHH------HHHHHHhhhc----CceEEEEe
Confidence 3457899999999999 8888888777 34665433
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=80.22 E-value=0.56 Score=43.99 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=18.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
+..+.|.|++|+||| |++..+.+
T Consensus 8 ~~~I~i~G~~GsGKS------T~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKS------TVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHH------HHHHHHHH
T ss_pred ceEEEEECCCCCCHH------HHHHHHHH
Confidence 345789999999999 77776654
No 349
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=80.20 E-value=0.74 Score=44.91 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=19.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
..+++|.||.|+||| ||+.++...
T Consensus 19 g~~ivl~GPSGaGKs------TL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRS------HIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHH------HHHHHHHHH
T ss_pred CCEEEEECcCCCCHH------HHHHHHHhh
Confidence 458899999999999 777666543
No 350
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=80.19 E-value=0.75 Score=46.03 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=20.1
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
+..+.|.||+|+||| |++..+.+.+
T Consensus 9 ~~~i~i~G~~GsGKs------Tla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKS------SVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHh
Confidence 346889999999999 8888776654
No 351
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=80.16 E-value=1.1 Score=47.05 Aligned_cols=38 Identities=5% Similarity=-0.053 Sum_probs=25.1
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE-ccC
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APW 485 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc-ApS 485 (651)
...+.|.||.|+||| |++..+..+++.. +.+|++. +.+
T Consensus 129 g~vi~lvG~nGaGKT------Tll~~Lag~l~~~-~g~V~l~g~D~ 167 (328)
T 3e70_C 129 PYVIMFVGFNGSGKT------TTIAKLANWLKNH-GFSVVIAASDT 167 (328)
T ss_dssp SEEEEEECCTTSSHH------HHHHHHHHHHHHT-TCCEEEEEECC
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHHHhc-CCEEEEEeecc
Confidence 346789999999999 5555555556653 4566554 444
No 352
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=79.78 E-value=0.71 Score=43.91 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=20.8
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..+.|.||.|+||| |++.++..++.
T Consensus 7 ~~i~i~G~~GsGKS------Tl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKT------TLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHH------HHHHHHHHHHG
T ss_pred EEEEEECCCCCCHH------HHHHHHHHHhC
Confidence 35789999999999 88888877665
No 353
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=79.68 E-value=0.68 Score=48.28 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=21.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+++.+|.||.|+||| ||.+||...+.
T Consensus 23 ~~~~~i~G~NGsGKS------~lleAi~~~l~ 48 (339)
T 3qkt_A 23 EGINLIIGQNGSGKS------SLLDAILVGLY 48 (339)
T ss_dssp SEEEEEECCTTSSHH------HHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHH------HHHHHHHHHhc
Confidence 568899999999999 88898865443
No 354
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=79.57 E-value=0.95 Score=44.39 Aligned_cols=35 Identities=6% Similarity=-0.055 Sum_probs=24.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...+++.|.+|+||| +++..+... +. .+.+|++..
T Consensus 14 ~~i~~~~GkgGvGKT-----Tl~~~La~~-l~--~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKT-----TLTGEFGRY-LE--DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHH-----HHHHHHHHH-HT--TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHH-----HHHHHHHHH-HH--CCCeEEEEe
Confidence 456789999999999 555554444 44 377887765
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=79.46 E-value=0.61 Score=44.41 Aligned_cols=22 Identities=5% Similarity=-0.058 Sum_probs=17.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
..+.|.||+|+||| |++.++..
T Consensus 22 ~~i~i~G~~GsGKS------Tl~~~L~~ 43 (207)
T 2qt1_A 22 FIIGISGVTNSGKT------TLAKNLQK 43 (207)
T ss_dssp EEEEEEESTTSSHH------HHHHHHHT
T ss_pred eEEEEECCCCCCHH------HHHHHHHH
Confidence 35779999999999 77776654
No 356
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=78.96 E-value=0.69 Score=45.80 Aligned_cols=25 Identities=12% Similarity=0.002 Sum_probs=19.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..+.|.||+|+||| |++..+.+.+.
T Consensus 23 ~iI~I~G~~GSGKS------T~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKS------SVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHH------HHHHHHHHHTT
T ss_pred EEEEEECCCCCCHH------HHHHHHHHHhh
Confidence 35789999999999 88887766443
No 357
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=78.95 E-value=1.2 Score=49.61 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEE
Q 006311 424 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL 480 (651)
Q Consensus 424 LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rIL 480 (651)
++..+..-+...+. ....++|.||+|+||| |+..++..++. +..++.
T Consensus 245 ~~~~~l~~l~~~v~--~g~~i~I~GptGSGKT------TlL~aL~~~i~--~~~gii 291 (511)
T 2oap_1 245 VPSGVLAYLWLAIE--HKFSAIVVGETASGKT------TTLNAIMMFIP--PDAKVV 291 (511)
T ss_dssp SCHHHHHHHHHHHH--TTCCEEEEESTTSSHH------HHHHHHGGGSC--TTCCEE
T ss_pred CCHHHHHHHHHHHh--CCCEEEEECCCCCCHH------HHHHHHHhhCC--CCCCEE
Confidence 56666666665554 2346899999999999 55556655553 344443
No 358
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=78.80 E-value=1.1 Score=48.65 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=27.7
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc---ChhhHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP---WNRTCDKL 492 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp---SNsAaD~l 492 (651)
.+++.|++|+||| +|.+.+...+ ....+.+|++++- .+.|.+.+
T Consensus 102 vI~ivG~~GvGKT-----T~a~~LA~~l-~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 102 VVLMAGLQGAGKT-----TSVGKLGKFL-REKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp EEEEECSTTSSHH-----HHHHHHHHHH-HHTSCCCEEEEECCCSSTTHHHHH
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHH-HHhcCCeEEEEecCCCCccHHHHH
Confidence 4667899999999 6666666554 4333677766432 33455543
No 359
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=78.52 E-value=2.2 Score=43.31 Aligned_cols=59 Identities=3% Similarity=-0.114 Sum_probs=41.4
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
.+..+|++ .+...++|.|.|||||| +...+.+..-+++ +.++++.+..-+..+. .++..
T Consensus 9 ~LD~~l~GGl~~gs~~li~g~p~~~~~-----~l~~qfl~~g~~~--Ge~~~~~~~~e~~~~l-~~~~~ 69 (260)
T 3bs4_A 9 ELDREIGKIKKHSLILIHEEDASSRGK-----DILFYILSRKLKS--DNLVGMFSISYPLQLI-IRILS 69 (260)
T ss_dssp HHHHHHCCBCTTCEEEEEECSGGGCHH-----HHHHHHHHHHHHT--TCEEEEEECSSCHHHH-HHHHH
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCccHH-----HHHHHHHHHHHHC--CCcEEEEEEeCCHHHH-HHHHH
Confidence 35566754 34567899999999999 6666666666665 8899999986665544 44443
No 360
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=77.96 E-value=1.5 Score=45.58 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=27.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCC-CeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK-SRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~-~rILVcAp 484 (651)
...+.|.||+|+||| |++.++..++....+ .+|-++..
T Consensus 90 g~ivgI~G~sGsGKS------TL~~~L~gll~~~~G~~~v~~v~q 128 (312)
T 3aez_A 90 PFIIGVAGSVAVGKS------TTARVLQALLARWDHHPRVDLVTT 128 (312)
T ss_dssp CEEEEEECCTTSCHH------HHHHHHHHHHHTSTTCCCEEEEEG
T ss_pred CEEEEEECCCCchHH------HHHHHHHhhccccCCCCeEEEEec
Confidence 346789999999999 888888888875333 35655443
No 361
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=77.85 E-value=1.1 Score=43.70 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=23.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 481 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV 481 (651)
...+.|.||.|+||| |++.++..++ + ..|.+
T Consensus 23 G~~~~lvGpsGsGKS------TLl~~L~g~~---p-G~i~~ 53 (218)
T 1z6g_A 23 IYPLVICGPSGVGKG------TLIKKLLNEF---P-NYFYF 53 (218)
T ss_dssp CCCEEEECSTTSSHH------HHHHHHHHHS---T-TTEEE
T ss_pred CCEEEEECCCCCCHH------HHHHHHHhhC---C-CcEEE
Confidence 458899999999999 7777776644 3 34555
No 362
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=77.74 E-value=1.4 Score=46.74 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=24.8
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
.+.|.||.|+||| |++..+..+++. .+.+|++.+.
T Consensus 159 vi~lvG~nGsGKT------Tll~~Lag~l~~-~~G~V~l~g~ 193 (359)
T 2og2_A 159 VIMIVGVNGGGKT------TSLGKLAHRLKN-EGTKVLMAAG 193 (359)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHHHH-TTCCEEEECC
T ss_pred EEEEEcCCCChHH------HHHHHHHhhccc-cCCEEEEecc
Confidence 5789999999999 555555555664 3567777653
No 363
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=77.73 E-value=1.4 Score=46.32 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=25.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
..+.|.|+||+||| |+..++...+.. .+.+|.|.+.
T Consensus 75 ~~v~lvG~pgaGKS------TLln~L~~~~~~-~~~~v~V~~~ 110 (349)
T 2www_A 75 FRVGLSGPPGAGKS------TFIEYFGKMLTE-RGHKLSVLAV 110 (349)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHHHH-TTCCEEEEEC
T ss_pred eEEEEEcCCCCCHH------HHHHHHHHHhhh-cCCeEEEEee
Confidence 45789999999999 666666555554 3567766664
No 364
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=77.42 E-value=0.79 Score=43.89 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=21.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...+.|.||.|+||| |++.++..++
T Consensus 20 Gei~~l~GpnGsGKS------TLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKS------TVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHH------HHHHHHHHHS
T ss_pred CCEEEEECCCCCCHH------HHHHHHHhhC
Confidence 458899999999999 8888877665
No 365
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=77.34 E-value=0.71 Score=49.71 Aligned_cols=22 Identities=9% Similarity=-0.126 Sum_probs=17.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
+..++|.||||+||| |++..+.
T Consensus 258 ~~lIil~G~pGSGKS------Tla~~L~ 279 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKS------TFIQEHL 279 (416)
T ss_dssp CCEEEEESCTTSSHH------HHHHHHT
T ss_pred CEEEEEECCCCCCHH------HHHHHHH
Confidence 567889999999999 7666554
No 366
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.32 E-value=1.4 Score=48.92 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=27.1
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE-ccCh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWN 486 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc-ApSN 486 (651)
..+.|.||.|+||| |++..+..+++. .+.+|++. +.+.
T Consensus 294 eVI~LVGpNGSGKT------TLl~~LAgll~~-~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 294 FVILMVGVNGVGKT------TTIGKLARQFEQ-QGKSVMLAAGDTF 332 (503)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHHHH-TTCCEEEECCCTT
T ss_pred eEEEEECCCcccHH------HHHHHHHHHhhh-cCCeEEEecCccc
Confidence 36789999999999 555556666664 36688886 4443
No 367
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.21 E-value=0.84 Score=47.95 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.1
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.++|.||+|+||| |++..+.+
T Consensus 7 ~i~i~GptGsGKT------tla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKT------DLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 6889999999999 66666554
No 368
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=77.21 E-value=3 Score=40.08 Aligned_cols=47 Identities=9% Similarity=0.107 Sum_probs=32.0
Q ss_pred eEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE-EccChhhHHHHHHHHH
Q 006311 444 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI-CAPWNRTCDKLMECLM 497 (651)
Q Consensus 444 ~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV-cApSNsAaD~l~~rL~ 497 (651)
..|.|+-|+||| |.++.+.+.++.. +.++++ -=|........+.++.
T Consensus 3 I~~EG~DGsGKs------Tq~~~L~~~L~~~-g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 3 ITFEGIDGSGKS------TQIQLLAQYLEKR-GKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEECSTTSSHH------HHHHHHHHHHHHT-TCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHHHHC-CCcEEEEECCCCCcHHHHHHHHh
Confidence 468899999999 8888888888763 445544 4465555444444443
No 369
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.14 E-value=1.2 Score=44.89 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=21.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...+.|.||+|+||| |++.++...+.
T Consensus 48 g~~i~l~G~~GsGKS------Tl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKT------TVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHH------HHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHH------HHHHHHHHhcC
Confidence 457899999999999 88887766543
No 370
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=77.11 E-value=1.1 Score=43.23 Aligned_cols=29 Identities=10% Similarity=0.032 Sum_probs=21.8
Q ss_pred cccCCCeEEEEeCCCCCCccccChHHHhC
Q 006311 590 LANENTRVIVTGAPHNSPSRVRSDIARKN 618 (651)
Q Consensus 590 la~~~~rvVLaGD~~QL~PvV~S~~a~~~ 618 (651)
+......+|+|.+.-=+|.+-.+..++.+
T Consensus 122 l~~~~~~~vlVsNEVG~GiVP~~~~~R~f 150 (180)
T 1c9k_A 122 CQRCPAKVVLVTNEVGMGIVPENRLARHF 150 (180)
T ss_dssp HHHCCSEEEEECCCCCSSCCCSSHHHHHH
T ss_pred HHccCCCEEEEEccccCCCCCCCHHHHHH
Confidence 33455689999998888888777777653
No 371
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.05 E-value=2.3 Score=45.80 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=19.3
Q ss_pred HHHHHHhc--cCCCceEEeCcCCCCCC
Q 006311 431 AVHQILSF--EGQSPYLLEGPLCNNFV 455 (651)
Q Consensus 431 AV~~iL~~--~~~~p~LI~GPPGTGKT 455 (651)
.+..+|++ .....+.|.||||+|||
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKT 192 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKS 192 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChH
Confidence 45666743 34568999999999999
No 372
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=76.95 E-value=1.1 Score=43.05 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=22.6
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
.+.|.||+|+||| |+...+..+++ ..+ |.+.
T Consensus 3 ~i~i~G~nG~GKT------Tll~~l~g~~~-~~G--i~~~ 33 (189)
T 2i3b_A 3 HVFLTGPPGVGKT------TLIHKASEVLK-SSG--VPVD 33 (189)
T ss_dssp CEEEESCCSSCHH------HHHHHHHHHHH-HTT--CCCE
T ss_pred EEEEECCCCChHH------HHHHHHHhhcc-cCC--EEEc
Confidence 5689999999999 66677776666 344 5443
No 373
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=76.79 E-value=1.9 Score=42.72 Aligned_cols=51 Identities=8% Similarity=-0.035 Sum_probs=32.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE--EccChhhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI--CAPWNRTCDKLMECLM 497 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV--cApSNsAaD~l~~rL~ 497 (651)
...++|.|++|+||| |+++.+.+.+....+..+.+ --|........++++.
T Consensus 21 ~~~i~~~G~~g~GKs------t~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l 73 (223)
T 3ld9_A 21 SMFITFEGIDGSGKT------TQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLL 73 (223)
T ss_dssp CEEEEEECSTTSSHH------HHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHH
Confidence 446788999999999 77777777665312444444 3566555544444444
No 374
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=76.66 E-value=1 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=18.0
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.++|.||||+||| |++.++...+
T Consensus 26 ~i~l~G~~G~GKT------Tl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKS------TIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCcHH------HHHHHHHHHh
Confidence 4889999999999 6666665544
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=76.60 E-value=0.97 Score=43.33 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=17.7
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
..+.|.|++|+||| |++..+..
T Consensus 5 ~~I~i~G~~GSGKS------T~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKS------TVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHH------HHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHH
Confidence 35789999999999 77776654
No 376
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=76.58 E-value=2.7 Score=41.39 Aligned_cols=48 Identities=13% Similarity=0.040 Sum_probs=31.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccC-hhhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW-NRTCDKLMECLM 497 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApS-NsAaD~l~~rL~ 497 (651)
...++|.|++|+||| |+++.+.+.+.. .-+++.-|. .......++++.
T Consensus 5 g~~i~~eG~~g~GKs------t~~~~l~~~l~~---~~~~~~ep~~~t~~g~~ir~~l 53 (216)
T 3tmk_A 5 GKLILIEGLDRTGKT------TQCNILYKKLQP---NCKLLKFPERSTRIGGLINEYL 53 (216)
T ss_dssp CCEEEEEECSSSSHH------HHHHHHHHHHCS---SEEEEESSCTTSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHhcc---cceEEEecCCCChHHHHHHHHH
Confidence 346789999999999 888877776653 234555563 344444444444
No 377
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=76.40 E-value=2.7 Score=43.83 Aligned_cols=36 Identities=14% Similarity=-0.004 Sum_probs=24.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...+.|.|+||+||| |++..+...+.. .+.+|.+..
T Consensus 56 ~~~i~i~G~~g~GKS------Tl~~~l~~~~~~-~~~~v~v~~ 91 (341)
T 2p67_A 56 TLRLGVTGTPGAGKS------TFLEAFGMLLIR-EGLKVAVIA 91 (341)
T ss_dssp SEEEEEEECTTSCHH------HHHHHHHHHHHH-TTCCEEEEE
T ss_pred CEEEEEEcCCCCCHH------HHHHHHHHHHHh-cCCeEEEEe
Confidence 456789999999999 555555555553 355666554
No 378
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=76.38 E-value=1.2 Score=43.88 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..++.|.||.|+||| ||..++...+.
T Consensus 16 G~ii~l~GpsGsGKS------TLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKS------SLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHH------HHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHH------HHHHHHhccCC
Confidence 468999999999999 88787776543
No 379
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=75.97 E-value=2.5 Score=43.31 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=24.8
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-CCCeEEE
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILI 481 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~~~rILV 481 (651)
..+.|.||.|+||| |++.++..++... ....|.+
T Consensus 81 ~iigI~G~~GsGKS------Tl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 81 YIISIAGSVAVGKS------TTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp EEEEEEECTTSSHH------HHHHHHHHHHTTSTTCCCEEE
T ss_pred EEEEEECCCCCCHH------HHHHHHHHHHhhCCCCCeEEE
Confidence 46789999999999 8888888776521 2345655
No 380
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=75.83 E-value=2.9 Score=46.17 Aligned_cols=31 Identities=16% Similarity=-0.032 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHhc--cCCCceEEeCcCCCCCC
Q 006311 425 DSDSNSAVHQILSF--EGQSPYLLEGPLCNNFV 455 (651)
Q Consensus 425 N~~Q~~AV~~iL~~--~~~~p~LI~GPPGTGKT 455 (651)
-+...+.+...+.. .+...++|+||+|.|||
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKT 161 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKS 161 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHH
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHH
Confidence 35566667776652 23567899999999999
No 381
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=75.76 E-value=1 Score=45.08 Aligned_cols=23 Identities=9% Similarity=-0.097 Sum_probs=18.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
-.-|.||||+||| |+++.+.+-+
T Consensus 10 ~~~~~G~pGsGKs------T~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKG------TQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHH
T ss_pred ceeeECCCCCCHH------HHHHHHHHHh
Confidence 3568999999999 8888776644
No 382
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=75.59 E-value=2.7 Score=43.89 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=25.0
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC-CCeEEEEc
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-KSRILICA 483 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~-~~rILVcA 483 (651)
.+.|.||+|+||| |++.++..++...+ +.+|.+..
T Consensus 94 iigI~GpsGSGKS------Tl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 94 IIGIAGSVAVGKS------TTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhcccCCCCeEEEEe
Confidence 5679999999999 77888888776432 23454443
No 383
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=75.15 E-value=1.1 Score=47.46 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=21.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
.+.++|.||.|+||| ||.+||...+.
T Consensus 23 ~g~~~i~G~NGaGKT------Tll~ai~~al~ 48 (365)
T 3qf7_A 23 SGITVVEGPNGAGKS------SLFEAISFALF 48 (365)
T ss_dssp SEEEEEECCTTSSHH------HHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHH------HHHHHHHHHhc
Confidence 458899999999999 88888876553
No 384
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=74.52 E-value=1.2 Score=45.70 Aligned_cols=26 Identities=8% Similarity=0.006 Sum_probs=21.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
..+.|.||+|+||| |++..+..++..
T Consensus 32 ~ii~I~G~sGsGKS------Tla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKS------FTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHhhh
Confidence 35679999999999 888888877764
No 385
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=74.44 E-value=3.8 Score=43.47 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=31.3
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 497 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~ 497 (651)
...+++|.|++||||| +++.++...... .......+--+.-..+.+-..|.
T Consensus 159 ~~~~vli~Ge~GtGK~------~lAr~ih~~s~r-~~~~fv~v~~~~~~~~~~~~elf 209 (387)
T 1ny5_A 159 AECPVLITGESGVGKE------VVARLIHKLSDR-SKEPFVALNVASIPRDIFEAELF 209 (387)
T ss_dssp CCSCEEEECSTTSSHH------HHHHHHHHHSTT-TTSCEEEEETTTSCHHHHHHHHH
T ss_pred CCCCeEEecCCCcCHH------HHHHHHHHhcCC-CCCCeEEEecCCCCHHHHHHHhc
Confidence 4678899999999999 788888765443 23333333333333344444454
No 386
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=74.34 E-value=1.3 Score=42.36 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=17.9
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
..+.|.|++|+||| |++..+.+
T Consensus 4 ~~i~i~G~~gsGks------t~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKS------TIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHH------HHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHH
Confidence 46789999999999 77776654
No 387
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=73.63 E-value=1.6 Score=42.66 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=19.1
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...+.|.|++|+||| |++..+...+
T Consensus 16 ~~~i~i~G~~gsGKs------t~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKS------TVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHH------HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHH------HHHHHHHHHc
Confidence 346789999999999 7777666533
No 388
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=73.12 E-value=1.5 Score=43.23 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=19.8
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+-|.||.|+||| |++.++..++
T Consensus 26 ~iigI~G~~GsGKS------Tl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKS------TVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEEEECCCCCCHH------HHHHHHHHHh
Confidence 35789999999999 8888777655
No 389
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.11 E-value=2.6 Score=56.39 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=33.4
Q ss_pred HHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc-ChhhHHHHHHHHH
Q 006311 430 SAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP-WNRTCDKLMECLM 497 (651)
Q Consensus 430 ~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp-SNsAaD~l~~rL~ 497 (651)
..+...+. ...|+|+.|||||||| .++..++ ...++..++.... +...++.+...+.
T Consensus 1295 ~ll~~ll~--~~~pvLL~GptGtGKT-----~li~~~L----~~l~~~~~~~infS~~Tta~~l~~~~e 1352 (3245)
T 3vkg_A 1295 DVLHAWLS--EHRPLILCGPPGSGKT-----MTLTSTL----RAFPDFEVVSLNFSSATTPELLLKTFD 1352 (3245)
T ss_dssp HHHHHHHH--TTCCCEEESSTTSSHH-----HHHHHHG----GGCTTEEEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHHHHH--CCCcEEEECCCCCCHH-----HHHHHHH----HhCCCCceEEEEeeCCCCHHHHHHHHh
Confidence 34444444 3679999999999999 6654433 3334444443333 3344555655554
No 390
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=72.97 E-value=1.2 Score=46.95 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=21.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++..+|.||.|+||| +|.+||...+
T Consensus 25 ~gl~vi~G~NGaGKT------~ileAI~~~l 49 (371)
T 3auy_A 25 KGIVAIIGENGSGKS------SIFEAVFFAL 49 (371)
T ss_dssp SEEEEEEECTTSSHH------HHHHHHHHHH
T ss_pred CCeEEEECCCCCCHH------HHHHHHHHHH
Confidence 568999999999999 8899997633
No 391
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=72.85 E-value=1.9 Score=44.19 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=17.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...+.|.||+|+||| |++..+.+.+.
T Consensus 5 ~~iIgItG~sGSGKS------Tva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTS------TVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CC------THHHHHHHHHH
T ss_pred ceEEEEECCCCCCHH------HHHHHHHHHHh
Confidence 345789999999999 88887777554
No 392
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=72.71 E-value=1.3 Score=44.10 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=19.0
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..+.|.||+|+||| |++.++.+.+
T Consensus 28 ~~I~I~G~~GsGKS------Tl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKG------TLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHH------HHHHHHHHHT
T ss_pred cEEEEECCCCCCHH------HHHHHHHHhc
Confidence 46789999999999 7777776433
No 393
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=72.68 E-value=4.2 Score=39.41 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=31.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE-ccChhhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWNRTCDKLMECLM 497 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc-ApSNsAaD~l~~rL~ 497 (651)
...|.|+.|+||| |.++.+.+.+.. +.+++.+ -|+....-..+.++.
T Consensus 4 FI~~EG~dGsGKs------Tq~~~L~~~L~~--~~~v~~~~eP~~t~~g~~ir~~l 51 (205)
T 4hlc_A 4 FITFEGPEGSGKT------TVINEVYHRLVK--DYDVIMTREPGGVPTGEEIRKIV 51 (205)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHHTT--TSCEEEEESSTTCHHHHHHHHHH
T ss_pred EEEEECCCCCcHH------HHHHHHHHHHHC--CCCEEEeeCCCCChHHHHHHHHH
Confidence 5678999999999 778888777753 5555544 455554444444444
No 394
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=72.56 E-value=13 Score=43.34 Aligned_cols=47 Identities=2% Similarity=-0.212 Sum_probs=32.2
Q ss_pred EEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 445 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 445 LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+..--.|+||| .+.+-. .++....+..|.|+|++.--|..-++-+..
T Consensus 92 iaEM~TGEGKT-----Lva~lp--~~lnAL~G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 92 VAEMKTGEGKT-----LAATMP--IYLNALIGKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp EEECCTTSCHH-----HHTHHH--HHHHHTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred hhhccCCCCcc-----HHHHHH--HHHHHhcCCceEEEeccHHHHHhHHHHHHH
Confidence 67778999999 543322 233445688999999998777665554443
No 395
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=72.46 E-value=4.6 Score=49.04 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhc-cCCCceEEeCcCCCCCCCCchhHHHHHHHHH---HHHhCCCCeEEEEccChhhHHHHHHHHHh
Q 006311 426 SDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ---IRRRSPKSRILICAPWNRTCDKLMECLMK 498 (651)
Q Consensus 426 ~~Q~~AV~~iL~~-~~~~p~LI~GPPGTGKT~s~~~~TlveaI~q---ll~~~~~~rILVcApSNsAaD~l~~rL~~ 498 (651)
+...+.+...|.. .+.+.+.|+||+|.||| |||..+.+ +....+...+.++.......+.+...+..
T Consensus 134 e~eLeeL~elL~~~d~~RVV~IvGmGGIGKT------TLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKT------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEECCSTTSSHH------HHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEEcCCCccHH------HHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4555666666643 33568899999999999 77766652 33333444566665444334444444443
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=72.03 E-value=1.3 Score=44.95 Aligned_cols=21 Identities=14% Similarity=-0.031 Sum_probs=17.2
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.+.|.|++|+||| |++..+..
T Consensus 77 iI~I~G~~GSGKS------Tva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKS------SVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 5789999999999 77776653
No 397
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=71.77 E-value=1.8 Score=45.68 Aligned_cols=38 Identities=5% Similarity=-0.167 Sum_probs=27.7
Q ss_pred HHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 429 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 429 ~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..|+..++.-..-..+.|.||.|+||| |+..+|..+.+
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKT------TLl~~I~g~~~ 96 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKS------TLLGMICNGAS 96 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHH------HHHHHHHHHSC
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHH------HHHHHHhcCCC
Confidence 468888754444568899999999999 66666655543
No 398
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=71.77 E-value=4.3 Score=40.73 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhccCCCceEEe--CcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEE--EccChhhH
Q 006311 427 DSNSAVHQILSFEGQSPYLLE--GPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI--CAPWNRTC 489 (651)
Q Consensus 427 ~Q~~AV~~iL~~~~~~p~LI~--GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILV--cApSNsAa 489 (651)
+|...+.+++........+.- +-.|+||| ++.+.+...+.+ .+.|||+ +-+...+.
T Consensus 21 ~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKT-----T~a~nLA~~la~--~G~rVlliD~D~q~~~~ 80 (298)
T 2oze_A 21 KILEELRRILSNKNEAIVILNNYFKGGVGKS-----KLSTMFAYLTDK--LNLKVLMIDKDLQATLT 80 (298)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECCSSSSSSHH-----HHHHHHHHHHHH--TTCCEEEEEECTTCHHH
T ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCchHH-----HHHHHHHHHHHh--CCCeEEEEeCCCCCCHH
Confidence 444555555543223333333 58999999 665555554444 4788888 44554444
No 399
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=71.76 E-value=3.6 Score=42.08 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=23.7
Q ss_pred CCceEEeCc-CCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 441 QSPYLLEGP-LCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GP-PGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...++|.|+ +|.||| ++.+.+...+.+ .+.|||++
T Consensus 104 ~kvI~vts~kgG~GKT-----tva~nLA~~lA~--~G~rVLLI 139 (299)
T 3cio_A 104 NNILMITGATPDSGKT-----FVSSTLAAVIAQ--SDQKVLFI 139 (299)
T ss_dssp CCEEEEEESSSSSCHH-----HHHHHHHHHHHH--TTCCEEEE
T ss_pred CeEEEEECCCCCCChH-----HHHHHHHHHHHh--CCCcEEEE
Confidence 345677776 899999 555555554444 37888776
No 400
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=71.73 E-value=1.7 Score=42.81 Aligned_cols=15 Identities=13% Similarity=-0.073 Sum_probs=13.2
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
...++|.||+|+|||
T Consensus 34 g~~ilI~GpsGsGKS 48 (205)
T 2qmh_A 34 GLGVLITGDSGVGKS 48 (205)
T ss_dssp TEEEEEECCCTTTTH
T ss_pred CEEEEEECCCCCCHH
Confidence 346899999999999
No 401
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=71.60 E-value=1.6 Score=41.95 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=18.5
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
-...|.|++||||| |++..+.+.
T Consensus 13 ~iIgltG~~GSGKS------Tva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKS------TVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHH------HHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHh
Confidence 45679999999999 777777654
No 402
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=71.45 E-value=2.6 Score=43.16 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=22.6
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.+.|.|++|+||| +++. .+...+.. .+.+|++..
T Consensus 100 ~i~i~g~~G~GKT-----T~~~-~la~~~~~-~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKT-----TTAA-KLALYYKG-KGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHH-----HHHH-HHHHHHHH-TTCCEEEEE
T ss_pred EEEEECCCCCCHH-----HHHH-HHHHHHHH-cCCeEEEec
Confidence 4667799999999 4444 44445554 366777654
No 403
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=71.26 E-value=3.7 Score=42.95 Aligned_cols=37 Identities=5% Similarity=0.041 Sum_probs=25.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
....++.|-+|+||| ++.+.+...+.+ .+.|||++.-
T Consensus 26 ~~i~v~sgKGGvGKT-----TvA~~LA~~lA~--~G~rVLlvD~ 62 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKT-----TMSAATGVYLAE--KGLKVVIVST 62 (349)
T ss_dssp CEEEEEECSSSTTHH-----HHHHHHHHHHHH--SSCCEEEEEC
T ss_pred CEEEEEeCCCCccHH-----HHHHHHHHHHHH--CCCeEEEEeC
Confidence 446778899999999 555554444444 3888888763
No 404
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=70.79 E-value=3.5 Score=41.61 Aligned_cols=34 Identities=6% Similarity=0.080 Sum_probs=23.4
Q ss_pred CceEEeCc-CCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 442 SPYLLEGP-LCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 442 ~p~LI~GP-PGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
..++|.|+ +|.||| ++.+.+...+.+ .+.|||++
T Consensus 83 kvI~vts~kgG~GKT-----t~a~nLA~~lA~--~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKS-----TIAANLAVAYAQ--AGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHH-----HHHHHHHHHHHH--TTCCEEEE
T ss_pred eEEEEECCCCCCcHH-----HHHHHHHHHHHh--CCCeEEEE
Confidence 45667776 899999 666665555444 37788775
No 405
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=70.26 E-value=1.2 Score=43.47 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=19.1
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...+|.|++|+||| |+++.+.+.+
T Consensus 3 ~~i~~~G~~g~GKt------t~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKS------TFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHH------HHHHHHHHHC
T ss_pred eEEEEEcCCCCCHH------HHHHHHHHHc
Confidence 35789999999999 7777776544
No 406
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.13 E-value=1.5 Score=45.96 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=17.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
+..++|.||+|+||| ||+..+.+
T Consensus 10 ~~~i~i~GptgsGKt------~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKT------ALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHH------HHHHHHHH
T ss_pred CcEEEEECCCccCHH------HHHHHHHH
Confidence 346789999999999 66555543
No 407
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=70.09 E-value=1.6 Score=40.62 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.1
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
...+.|.||.|+||| |++.++..++
T Consensus 33 Ge~v~L~G~nGaGKT------TLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKT------TLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHH------HHHHHHHHHT
T ss_pred CCEEEEECCCCCCHH------HHHHHHHHhC
Confidence 347889999999999 8888887766
No 408
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.98 E-value=2 Score=44.28 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=21.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
++..+|.||.|+||| ||.+||..++
T Consensus 24 ~g~~~i~G~NGsGKS------~ll~ai~~ll 48 (322)
T 1e69_A 24 DRVTAIVGPNGSGKS------NIIDAIKWVF 48 (322)
T ss_dssp SSEEEEECCTTTCST------HHHHHHHHTS
T ss_pred CCcEEEECCCCCcHH------HHHHHHHHHh
Confidence 458899999999999 8889987554
No 409
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=69.71 E-value=2 Score=46.78 Aligned_cols=49 Identities=10% Similarity=-0.038 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 429 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 429 ~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
..|+..++....-..+.|.||.|+||| ||..+|..+... ....|.++-.
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKS------TLl~~Iag~~~~-~~G~i~~~G~ 193 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKS------VLLGMMARYTRA-DVIVVGLIGE 193 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHH------HHHHHHHHHSCC-SEEEEEEESC
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHH------HHHHHHhcccCC-CeEEEEEece
Confidence 458888754444568899999999999 666766655432 1224555543
No 410
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=69.64 E-value=4 Score=45.07 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=23.7
Q ss_pred HHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 431 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 431 AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
++......-+..-.+|+||+|+||| +.+..++.+...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKT-----tL~~~l~~~~~~ 177 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKT-----VLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHH-----HHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCcc-----HHHHHHHhhhhh
Confidence 5655443223346899999999999 555555555444
No 411
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=69.54 E-value=1.6 Score=45.77 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=16.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
...++|.||+|+||| |++..+.
T Consensus 3 ~~~i~i~GptgsGKt------~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKT------KTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHH------HHHHHHH
T ss_pred CcEEEEECCCcCCHH------HHHHHHH
Confidence 346789999999999 5555444
No 412
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=69.47 E-value=2.8 Score=43.90 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=27.7
Q ss_pred HHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 435 ILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 435 iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
++........++.|-.|+||| ++.+.+.. .+.. .+.|||++.-
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKT-----t~a~~lA~-~la~-~g~~vllid~ 52 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKT-----TTSCSLAI-QLAK-VRRSVLLLST 52 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHH-----HHHHHHHH-HHTT-SSSCEEEEEC
T ss_pred HhcCCCeEEEEEeCCCCccHH-----HHHHHHHH-HHHh-CCCcEEEEEC
Confidence 343333567888999999999 44444444 4443 4778877653
No 413
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=68.57 E-value=1.7 Score=45.99 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.3
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
.++|.||+|+||| |++..+.+
T Consensus 9 lI~I~GptgSGKT------tla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKT------ELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHH------HHHHHHHH
T ss_pred eEEEECCCcCcHH------HHHHHHHH
Confidence 6789999999999 77766654
No 414
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=68.29 E-value=9.5 Score=37.46 Aligned_cols=43 Identities=2% Similarity=-0.157 Sum_probs=26.1
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE--ccChhhHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC--APWNRTCDKLM 493 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc--ApSNsAaD~l~ 493 (651)
..+.-|-.|+||| ++.+.+... +.. +.|||+. -+.+.+.+.+.
T Consensus 30 I~v~s~kGGvGKT-----T~a~~LA~~-la~--g~~VlliD~D~~~~~~~~~~ 74 (267)
T 3k9g_A 30 ITIASIKGGVGKS-----TSAIILATL-LSK--NNKVLLIDMDTQASITSYFY 74 (267)
T ss_dssp EEECCSSSSSCHH-----HHHHHHHHH-HTT--TSCEEEEEECTTCHHHHHTH
T ss_pred EEEEeCCCCchHH-----HHHHHHHHH-HHC--CCCEEEEECCCCCCHHHHhh
Confidence 3344568899999 555554444 443 7888774 45555555443
No 415
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=68.11 E-value=2.9 Score=47.78 Aligned_cols=51 Identities=12% Similarity=-0.033 Sum_probs=30.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 417 CPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 417 ~~~~~~~LN~~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
..|.....+.+++++...--+......++|.|+||+||| |++.++.+.+..
T Consensus 28 ~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKS------TlAr~La~~L~~ 78 (630)
T 1x6v_B 28 VTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKT------TVSMALEEYLVC 78 (630)
T ss_dssp ------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHH------HHHHHHHHHHHH
T ss_pred ccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHH------HHHHHHHHHHHh
Confidence 445555678888887531000012345789999999999 888887776643
No 416
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=68.02 E-value=3.5 Score=45.58 Aligned_cols=47 Identities=9% Similarity=-0.038 Sum_probs=30.4
Q ss_pred HHHHHHh-c-cCCCceEEeCcCCCCCCCCchhHHHHHH--HHHHHHhCCCCeEEEEcc
Q 006311 431 AVHQILS-F-EGQSPYLLEGPLCNNFVLSKTGNVVREA--VLQIRRRSPKSRILICAP 484 (651)
Q Consensus 431 AV~~iL~-~-~~~~p~LI~GPPGTGKT~s~~~~Tlvea--I~qll~~~~~~rILVcAp 484 (651)
++..+.. . .....++|.||+|+||| |++.. +.-++.. ....|.+...
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKS------TL~~~~ll~Gl~~~-~~g~i~v~g~ 77 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKT------LFSIQFLYNGIIEF-DEPGVFVTFE 77 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHH------HHHHHHHHHHHHHH-CCCEEEEESS
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHH------HHHHHHHHHHHHhC-CCCEEEEEEe
Confidence 5666654 2 34568999999999999 66666 3344442 2346666654
No 417
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=67.92 E-value=1.9 Score=40.32 Aligned_cols=20 Identities=10% Similarity=-0.115 Sum_probs=15.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
-++|.||+|+||| |++..+.
T Consensus 7 kv~lvG~~g~GKS------TLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKS------NLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHH------HHHHHHH
T ss_pred EEEEECcCCCCHH------HHHHHHh
Confidence 3689999999999 6555544
No 418
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=67.88 E-value=3.1 Score=42.85 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=17.3
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQ 469 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~q 469 (651)
+.++|.|+-|+||| |+...+..
T Consensus 5 ~v~~i~G~~GaGKT------Tll~~l~~ 26 (318)
T 1nij_A 5 AVTLLTGFLGAGKT------TLLRHILN 26 (318)
T ss_dssp EEEEEEESSSSSCH------HHHHHHHH
T ss_pred cEEEEEecCCCCHH------HHHHHHHh
Confidence 46899999999999 66555554
No 419
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=67.74 E-value=2.1 Score=37.80 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=11.3
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
++|.|++|+|||
T Consensus 4 i~v~G~~~~GKS 15 (161)
T 2dyk_A 4 VVIVGRPNVGKS 15 (161)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 420
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=67.65 E-value=1.6 Score=46.18 Aligned_cols=14 Identities=14% Similarity=0.045 Sum_probs=12.9
Q ss_pred CceEEeCcCCCCCC
Q 006311 442 SPYLLEGPLCNNFV 455 (651)
Q Consensus 442 ~p~LI~GPPGTGKT 455 (651)
..++|.||+|+|||
T Consensus 41 ~lIvI~GPTgsGKT 54 (339)
T 3a8t_A 41 KLLVLMGATGTGKS 54 (339)
T ss_dssp EEEEEECSTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 47899999999999
No 421
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=67.56 E-value=2.1 Score=40.49 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=13.1
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
..-++|.|++|+|||
T Consensus 12 ~~~i~~~G~~g~GKT 26 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKT 26 (218)
T ss_dssp CCEEEEECSTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 455789999999999
No 422
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=67.04 E-value=2.5 Score=45.79 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 427 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 427 ~Q~~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..+++++.+.. ....+.|.||+|+||| |+..++.-+..
T Consensus 57 ~i~~~L~~~~~--~~~~valvG~nGaGKS------TLln~L~Gl~~ 94 (413)
T 1tq4_A 57 AISDALKEIDS--SVLNVAVTGETGSGKS------SFINTLRGIGN 94 (413)
T ss_dssp HHHHHHHHHHH--CCEEEEEEECTTSSHH------HHHHHHHTCCT
T ss_pred hhhhhhhhccc--CCeEEEEECCCCCcHH------HHHHHHhCCCC
Confidence 34445554443 2457889999999999 77777765443
No 423
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=66.89 E-value=3.8 Score=43.15 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=28.8
Q ss_pred HHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 434 QILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 434 ~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
.++........++.|-.|+||| ++.+.+...+.....+.|||++.-
T Consensus 11 ~~l~~~~~~i~~~~gkGGvGKT-----t~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 11 SIVQHDSLKWIFVGGKGGVGKT-----TTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp HHHTCTTCSEEEEECSTTSSHH-----HHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHhcCCCcEEEEEeCCCCCcHH-----HHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3444333567889999999999 554444444431135788877654
No 424
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=66.65 E-value=4.7 Score=42.53 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
...+++|.|++||||+ +++.++.+....
T Consensus 151 ~~~~vli~GesGtGKe------~lAr~ih~~s~r 178 (368)
T 3dzd_A 151 SKAPVLITGESGTGKE------IVARLIHRYSGR 178 (368)
T ss_dssp SCSCEEEECCTTSSHH------HHHHHHHHHHCC
T ss_pred cchhheEEeCCCchHH------HHHHHHHHhccc
Confidence 4678999999999999 888888765543
No 425
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=66.27 E-value=2.4 Score=37.46 Aligned_cols=12 Identities=8% Similarity=-0.158 Sum_probs=11.3
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
++|.|++|+|||
T Consensus 6 i~v~G~~~~GKS 17 (167)
T 1kao_A 6 VVVLGSGGVGKS 17 (167)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 426
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=65.81 E-value=2 Score=40.11 Aligned_cols=20 Identities=10% Similarity=-0.115 Sum_probs=15.6
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHH
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVL 468 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~ 468 (651)
-++|.||+|+||| |++..+.
T Consensus 31 kv~lvG~~g~GKS------TLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKS------NLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHH------HHHHHHH
T ss_pred EEEEECcCCCCHH------HHHHHHh
Confidence 4689999999999 6555543
No 427
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=65.80 E-value=2.4 Score=37.60 Aligned_cols=13 Identities=8% Similarity=-0.084 Sum_probs=11.7
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 7 ~i~v~G~~~~GKs 19 (168)
T 1z2a_A 7 KMVVVGNGAVGKS 19 (168)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3689999999999
No 428
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=65.78 E-value=4.2 Score=44.16 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=22.7
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
.++|.||.|+||| +++..+. ..+.. .+.+|++..
T Consensus 100 vi~i~G~~GsGKT-----T~~~~LA-~~l~~-~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKT-----TTAAKLA-LYYKG-KGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHH-----HHHHHHH-HHHHT-TTCCEEEEE
T ss_pred EEEEECCCCCCHH-----HHHHHHH-HHHHH-cCCeEEEee
Confidence 4677899999999 5555544 44553 366776644
No 429
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=65.55 E-value=5.4 Score=40.67 Aligned_cols=37 Identities=5% Similarity=0.071 Sum_probs=24.0
Q ss_pred CccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCC
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNS 606 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL 606 (651)
.||+||||=+.-....++.+... .++ .+|++-++...
T Consensus 201 ~yD~VIIDtpp~~~~~da~~l~~-~aD---~vllVv~~~~~ 237 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTDAAIVGR-HVG---TTLMVARYAVN 237 (286)
T ss_dssp HCSEEEEECCCTTTCTHHHHHTT-TCS---EEEEEEETTTS
T ss_pred CCCEEEEcCCCCcchHHHHHHHH-HCC---eEEEEEeCCCC
Confidence 59999999877655555544333 444 67777665544
No 430
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=65.27 E-value=1.8 Score=45.46 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=21.0
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
..+.|.||.|+||| |++.++..++.
T Consensus 171 ~k~~IvG~nGsGKS------TLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKS------VLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHH------HHHHHHHHHTT
T ss_pred CeEEEECCCCCCHH------HHHHHHHHHhC
Confidence 46789999999999 88888877655
No 431
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.21 E-value=2.5 Score=37.46 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=11.3
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
++|.|++|+|||
T Consensus 6 i~v~G~~~~GKs 17 (170)
T 1ek0_A 6 LVLLGEAAVGKS 17 (170)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 432
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=65.05 E-value=3.4 Score=45.69 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=26.1
Q ss_pred HHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 430 SAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 430 ~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+||...+-..+-.-..|+|++|+||| +.+.+++.++.+
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT-----~L~~~i~~~~~~ 179 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKT-----VLIMELINNVAK 179 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHH-----HHHHHHHHHTTT
T ss_pred EEEecccccccCCeeeeecCCCCChH-----HHHHHHHHhhHh
Confidence 56665543333456789999999999 776677665443
No 433
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=64.82 E-value=2.6 Score=46.87 Aligned_cols=26 Identities=4% Similarity=0.046 Sum_probs=20.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
+..+++.|+||+||| |++..+.+.+.
T Consensus 35 ~~lIvlvGlpGSGKS------Tia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKT------YISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHH------HHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHH------HHHHHHHHHHh
Confidence 346789999999999 77777765543
No 434
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=64.63 E-value=2.6 Score=37.92 Aligned_cols=13 Identities=15% Similarity=-0.107 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 9 ~i~v~G~~~~GKS 21 (177)
T 1wms_A 9 KVILLGDGGVGKS 21 (177)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3689999999999
No 435
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=64.60 E-value=1.1 Score=44.48 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=18.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
...++|.|++|+||| |+++.+.+.
T Consensus 24 ~~~I~ieG~~GsGKS------T~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKS------TFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHH------HHHTTTGGG
T ss_pred ceEEEEECCCCCCHH------HHHHHHHHh
Confidence 346789999999999 777666543
No 436
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=64.52 E-value=5 Score=41.56 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=25.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
....++-|-+|.||| ++.+.+...+.+ .+.|||++.
T Consensus 19 ~~i~v~sgkGGvGKT-----Tva~~LA~~lA~--~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKT-----TTSCSLAIQMSK--VRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHH-----HHHHHHHHHHHT--SSSCEEEEE
T ss_pred CEEEEEeCCCCCcHH-----HHHHHHHHHHHH--CCCeEEEEE
Confidence 557788899999999 555554444443 488888763
No 437
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=64.37 E-value=2.6 Score=44.77 Aligned_cols=24 Identities=13% Similarity=-0.093 Sum_probs=20.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
++.++|.||.|+||| |+.++|.-+
T Consensus 26 ~g~~~i~G~nG~GKt------tll~ai~~~ 49 (359)
T 2o5v_A 26 EGVTGIYGENGAGKT------NLLEAAYLA 49 (359)
T ss_dssp SEEEEEECCTTSSHH------HHHHHHHHH
T ss_pred CCeEEEECCCCCChh------HHHHHHHHh
Confidence 448899999999999 888888753
No 438
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=64.36 E-value=2.5 Score=37.20 Aligned_cols=12 Identities=8% Similarity=-0.105 Sum_probs=11.4
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
++|.|++|+|||
T Consensus 6 i~v~G~~~~GKs 17 (166)
T 2ce2_X 6 LVVVGAGGVGKS 17 (166)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 439
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=64.20 E-value=2.7 Score=38.72 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=12.9
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
..-++|.|++|+|||
T Consensus 48 ~~~i~vvG~~g~GKS 62 (193)
T 2ged_A 48 QPSIIIAGPQNSGKT 62 (193)
T ss_dssp CCEEEEECCTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 345789999999999
No 440
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=64.18 E-value=2.6 Score=38.20 Aligned_cols=13 Identities=15% Similarity=-0.141 Sum_probs=11.9
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 5 ~v~lvG~~gvGKS 17 (165)
T 2wji_A 5 EIALIGNPNVGKS 17 (165)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4689999999999
No 441
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=64.07 E-value=4.5 Score=45.21 Aligned_cols=36 Identities=8% Similarity=0.188 Sum_probs=26.4
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...+++.|.+|+||| ++.+.+...+.+. +.|||++.
T Consensus 8 ~~i~~~sgkGGvGKT-----T~a~~lA~~lA~~--G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKT-----SISCATAIRLAEQ--GKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEEE
T ss_pred CEEEEEeCCCcCHHH-----HHHHHHHHHHHHC--CCcEEEEE
Confidence 457789999999999 6666655555553 78888754
No 442
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=64.01 E-value=2.6 Score=37.79 Aligned_cols=13 Identities=15% Similarity=-0.061 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|+||+|||
T Consensus 6 ki~i~G~~~vGKS 18 (175)
T 2nzj_A 6 RVVLLGDPGVGKT 18 (175)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCccHH
Confidence 3689999999999
No 443
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=63.94 E-value=2.8 Score=37.79 Aligned_cols=13 Identities=8% Similarity=-0.054 Sum_probs=11.9
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 10 ~i~v~G~~~~GKS 22 (182)
T 1ky3_A 10 KVIILGDSGVGKT 22 (182)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4689999999999
No 444
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=63.65 E-value=2.5 Score=44.54 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=21.3
Q ss_pred CCCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 440 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 440 ~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
....++|.||.|+||| |+..++..++.
T Consensus 174 ~G~~i~ivG~sGsGKS------Tll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKT------TLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHH------HHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHH------HHHHHHHhcCC
Confidence 3568999999999999 77777766554
No 445
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=63.55 E-value=2.9 Score=36.94 Aligned_cols=13 Identities=8% Similarity=-0.087 Sum_probs=11.7
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 6 ~i~v~G~~~~GKs 18 (168)
T 1u8z_A 6 KVIMVGSGGVGKS 18 (168)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3689999999999
No 446
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=63.42 E-value=2 Score=44.87 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=24.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...++|.||.|+||| |+..++..++.. ....|.+-
T Consensus 171 g~~v~i~G~~GsGKT------Tll~~l~g~~~~-~~g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKT------TYIKSIMEFIPK-EERIISIE 205 (330)
T ss_dssp TCCEEEEESTTSCHH------HHHHHGGGGSCT-TSCEEEEE
T ss_pred CCEEEEECCCCCCHH------HHHHHHhCCCcC-CCcEEEEC
Confidence 458999999999999 777777665542 23345443
No 447
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=63.42 E-value=2.4 Score=45.92 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=18.0
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
..++|.||+|+||| ||+..+.+.+
T Consensus 3 ~~i~i~GptgsGKt------tla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKS------QLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHH------HHHHHHHHHH
T ss_pred cEEEEECcchhhHH------HHHHHHHHHC
Confidence 46789999999999 6666555433
No 448
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=63.28 E-value=2.6 Score=37.45 Aligned_cols=12 Identities=25% Similarity=0.011 Sum_probs=11.3
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
++|.|++|+|||
T Consensus 6 i~v~G~~~~GKs 17 (170)
T 1g16_A 6 ILLIGDSGVGKS 17 (170)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 689999999999
No 449
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=63.20 E-value=2.9 Score=37.16 Aligned_cols=13 Identities=15% Similarity=-0.138 Sum_probs=11.7
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 8 ~i~v~G~~~~GKS 20 (170)
T 1z0j_A 8 KVCLLGDTGVGKS 20 (170)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3689999999999
No 450
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=63.00 E-value=2.7 Score=41.88 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=25.3
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
..+.|.||.|+||| |+..++.-++.- ....|.+.
T Consensus 25 e~~~liG~nGsGKS------TLl~~l~Gl~~p-~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKS------VFLELIAGIVKP-DRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHH------HHHHHHHTSSCC-SEEEEEET
T ss_pred EEEEEECCCCCCHH------HHHHHHhCCCCC-CceEEEEC
Confidence 67889999999999 888887765542 23466664
No 451
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=62.43 E-value=3.1 Score=37.05 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=11.7
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 8 ~i~v~G~~~~GKs 20 (170)
T 1z08_A 8 KVVLLGEGCVGKT 20 (170)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECcCCCCHH
Confidence 3689999999999
No 452
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=62.40 E-value=4.4 Score=41.79 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=25.1
Q ss_pred CceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 442 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 442 ~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
...+.-|-+|+||| ++.+.+...+.+. +.|||++..
T Consensus 15 ~i~v~sgKGGvGKT-----TvA~~LA~~lA~~--G~rVLlvD~ 50 (324)
T 3zq6_A 15 TFVFIGGKGGVGKT-----TISAATALWMARS--GKKTLVIST 50 (324)
T ss_dssp EEEEEEESTTSSHH-----HHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEEEEeCCCCchHH-----HHHHHHHHHHHHC--CCcEEEEeC
Confidence 46778899999999 5555555444443 888888654
No 453
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=62.37 E-value=2.9 Score=37.31 Aligned_cols=12 Identities=17% Similarity=-0.006 Sum_probs=11.3
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
++|.|++|+|||
T Consensus 5 i~ivG~~~~GKS 16 (169)
T 3q85_A 5 VMLVGESGVGKS 16 (169)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 454
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=62.27 E-value=2.5 Score=41.48 Aligned_cols=35 Identities=3% Similarity=-0.052 Sum_probs=25.5
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...+.|.||.|+||| |+..++.-++.- ....|.+.
T Consensus 30 Ge~~~iiG~nGsGKS------TLl~~l~Gl~~p-~~G~i~~~ 64 (224)
T 2pcj_A 30 GEFVSIIGASGSGKS------TLLYILGLLDAP-TEGKVFLE 64 (224)
T ss_dssp TCEEEEEECTTSCHH------HHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHH------HHHHHHhcCCCC-CceEEEEC
Confidence 457889999999999 888877665542 23467664
No 455
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=62.23 E-value=3.1 Score=36.86 Aligned_cols=13 Identities=15% Similarity=0.023 Sum_probs=11.6
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 8 ~i~v~G~~~~GKs 20 (170)
T 1r2q_A 8 KLVLLGESAVGKS 20 (170)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3689999999999
No 456
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=62.18 E-value=2.9 Score=37.11 Aligned_cols=12 Identities=8% Similarity=-0.274 Sum_probs=11.3
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
++|.|++|+|||
T Consensus 6 i~v~G~~~~GKs 17 (172)
T 2erx_A 6 VAVFGAGGVGKS 17 (172)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 457
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=61.98 E-value=3 Score=44.76 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=21.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...++|.||.|+||| |+.++|..++.
T Consensus 26 ~~~~~i~G~nG~GKs------tll~ai~~~~~ 51 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKS------NMMDAISFVLG 51 (430)
T ss_dssp CSEEEEECSTTSSHH------HHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHH------HHHHHHHhhhc
Confidence 457899999999999 88888876653
No 458
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=61.96 E-value=3.8 Score=45.45 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=26.2
Q ss_pred HHHHHHHhccCCCceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 430 SAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 430 ~AV~~iL~~~~~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
+||...+-..+-.-..|+|++|+||| +.+.+++.++.+.
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT-----~L~~~l~~~~a~~ 192 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKT-----VLIMELINNIAKA 192 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHH-----HHHHHHHHHTTTT
T ss_pred eEeeeecccccCCeEEeecCCCCCch-----HHHHHHHHHHHhh
Confidence 34554433223446789999999999 7777777765443
No 459
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=61.84 E-value=3 Score=40.87 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=25.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...+.|.||.|+||| |+..++.-+++. ....|.+.
T Consensus 35 Ge~~~iiG~NGsGKS------TLlk~l~Gl~~p-~~G~I~~~ 69 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKT------TLLKTISTYLKP-LKGEIIYN 69 (214)
T ss_dssp TCCEEEECCTTSSHH------HHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHH------HHHHHHhcCCCC-CCeEEEEC
Confidence 458899999999999 888877665542 23456653
No 460
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=61.71 E-value=3 Score=36.91 Aligned_cols=12 Identities=8% Similarity=-0.128 Sum_probs=11.2
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
++|.|++|+|||
T Consensus 6 i~v~G~~~~GKs 17 (167)
T 1c1y_A 6 LVVLGSGGVGKS 17 (167)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 461
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=61.64 E-value=1.7 Score=41.05 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=21.4
Q ss_pred ceEEeCcCCCCCCCCchhHHHHHHHHHHHHh
Q 006311 443 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 473 (651)
Q Consensus 443 p~LI~GPPGTGKT~s~~~~TlveaI~qll~~ 473 (651)
.+.|.||.|+||| |++.++..++..
T Consensus 4 ~v~IvG~SGsGKS------TL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKT------TLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHH------HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhhh
Confidence 5679999999999 888888888775
No 462
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=61.24 E-value=2.8 Score=41.45 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=21.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...+.|.||.|+||| |+..++.-++.
T Consensus 31 Ge~~~i~G~nGsGKS------TLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKS------SLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHH------HHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHH------HHHHHHhcCCC
Confidence 458899999999999 88888766554
No 463
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=61.20 E-value=3.3 Score=37.62 Aligned_cols=13 Identities=15% Similarity=0.033 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 13 ki~v~G~~~~GKS 25 (195)
T 3bc1_A 13 KFLALGDSGVGKT 25 (195)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4689999999999
No 464
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=60.87 E-value=2.9 Score=37.52 Aligned_cols=13 Identities=8% Similarity=-0.000 Sum_probs=11.7
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 16 ~i~v~G~~~~GKs 28 (179)
T 2y8e_A 16 KLVFLGEQSVGKT 28 (179)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3689999999999
No 465
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=60.62 E-value=3.1 Score=37.39 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 11 ~i~v~G~~~~GKs 23 (181)
T 3tw8_B 11 KLLIIGDSGVGKS 23 (181)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4689999999999
No 466
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=60.56 E-value=3.1 Score=38.40 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 4 kv~ivG~~gvGKS 16 (184)
T 2zej_A 4 KLMIVGNTGSGKT 16 (184)
T ss_dssp EEEEESCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3689999999999
No 467
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=60.56 E-value=3.4 Score=37.66 Aligned_cols=13 Identities=15% Similarity=-0.036 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 9 ki~v~G~~~~GKS 21 (208)
T 3clv_A 9 KTVLLGESSVGKS 21 (208)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3689999999999
No 468
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=60.44 E-value=5.4 Score=41.92 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=26.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEcc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 484 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcAp 484 (651)
....+.-|-+|.||| ++.+.+...+.+...+.|||++..
T Consensus 18 ~~i~v~sgKGGvGKT-----TvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 18 HKWIFVGGKGGVGKT-----TSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp CCEEEEEESTTSSHH-----HHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred cEEEEEeCCCCCcHH-----HHHHHHHHHHHHhcCCCeEEEEEC
Confidence 456778899999999 555555555441125888887654
No 469
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=60.28 E-value=3 Score=41.20 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=26.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...+.|.||.|+||| |+..++.-++.- ....|.+..
T Consensus 31 Ge~~~iiG~nGsGKS------TLl~~l~Gl~~p-~~G~I~~~g 66 (235)
T 3tif_A 31 GEFVSIMGPSGSGKS------TMLNIIGCLDKP-TEGEVYIDN 66 (235)
T ss_dssp TCEEEEECSTTSSHH------HHHHHHTTSSCC-SEEEEEETT
T ss_pred CCEEEEECCCCCcHH------HHHHHHhcCCCC-CceEEEECC
Confidence 457899999999999 888877665542 234676643
No 470
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=60.25 E-value=3.5 Score=37.42 Aligned_cols=12 Identities=8% Similarity=-0.094 Sum_probs=11.3
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
++|.|++|+|||
T Consensus 7 i~v~G~~~~GKS 18 (189)
T 4dsu_A 7 LVVVGADGVGKS 18 (189)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 471
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=60.13 E-value=2.9 Score=37.21 Aligned_cols=12 Identities=25% Similarity=0.019 Sum_probs=11.3
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
++|.|+||+|||
T Consensus 5 i~~vG~~~~GKS 16 (166)
T 3q72_A 5 VLLLGAPGVGKS 16 (166)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 472
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=60.02 E-value=3.1 Score=41.69 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=26.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...+.|.||.|+||| |+..++.-++.- ....|.+.-
T Consensus 33 Ge~~~liG~nGsGKS------TLlk~l~Gl~~p-~~G~i~~~g 68 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKS------TLINVITGFLKA-DEGRVYFEN 68 (257)
T ss_dssp TCEEEEECSTTSSHH------HHHHHHTTSSCC-SEEEEEETT
T ss_pred CCEEEEECCCCCCHH------HHHHHHhCCCCC-CCcEEEECC
Confidence 457889999999999 888887765542 234676643
No 473
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=59.92 E-value=3.4 Score=37.20 Aligned_cols=13 Identities=8% Similarity=-0.010 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 8 ki~v~G~~~~GKs 20 (178)
T 2hxs_A 8 KIVVLGDGASGKT 20 (178)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3689999999999
No 474
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=59.56 E-value=3.7 Score=37.03 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=11.9
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 14 ki~v~G~~~~GKS 26 (181)
T 2efe_B 14 KLVLLGDVGAGKS 26 (181)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECcCCCCHH
Confidence 4689999999999
No 475
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=59.51 E-value=3.6 Score=41.65 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=25.6
Q ss_pred CccEEEEecCCCCChHhHHHHHhccccCCCeEEEEeCCCCC
Q 006311 566 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNS 606 (651)
Q Consensus 566 ~F~~IiIDEAsQatEpE~LIpL~~la~~~~rvVLaGD~~QL 606 (651)
+...+|+||.+..+.|.-+--+..+....+-++++.....|
T Consensus 113 l~~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 113 HCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTM 153 (270)
T ss_dssp CEEEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTGGGS
T ss_pred eeeeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEeccccC
Confidence 55689999998888887666565555543334444443344
No 476
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=59.45 E-value=3.3 Score=41.22 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=25.0
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHH--HHhCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQI--RRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ql--l~~~~~~rILVc 482 (651)
...+.|.||.|+||| |+..++.-+ +.- ....|.+.
T Consensus 29 Ge~~~l~G~nGsGKS------TLlk~l~Gl~~~~p-~~G~I~~~ 65 (250)
T 2d2e_A 29 GEVHALMGPNGAGKS------TLGKILAGDPEYTV-ERGEILLD 65 (250)
T ss_dssp TCEEEEECSTTSSHH------HHHHHHHTCTTCEE-EEEEEEET
T ss_pred CCEEEEECCCCCCHH------HHHHHHhCCCCCCC-CceEEEEC
Confidence 457889999999999 888887765 221 13467664
No 477
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=59.39 E-value=3.7 Score=36.78 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=11.9
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 17 ~i~v~G~~~~GKS 29 (179)
T 1z0f_A 17 KYIIIGDMGVGKS 29 (179)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 478
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=59.24 E-value=3.2 Score=38.17 Aligned_cols=15 Identities=13% Similarity=-0.084 Sum_probs=13.0
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
..-++|.|++|+|||
T Consensus 23 ~~~i~v~G~~~~GKS 37 (195)
T 1svi_A 23 LPEIALAGRSNVGKS 37 (195)
T ss_dssp CCEEEEEEBTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 345799999999999
No 479
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=59.14 E-value=3.8 Score=36.31 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=11.2
Q ss_pred eEEeCcCCCCCC
Q 006311 444 YLLEGPLCNNFV 455 (651)
Q Consensus 444 ~LI~GPPGTGKT 455 (651)
.+|.|++|+|||
T Consensus 3 i~~~G~~~~GKs 14 (164)
T 1r8s_A 3 ILMVGLDAAGKT 14 (164)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 579999999999
No 480
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=59.04 E-value=3.3 Score=41.07 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=25.9
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...+.|.||.|+||| |+..++.-++.- ...+|.+.
T Consensus 28 Ge~~~i~G~nGsGKS------TLl~~l~Gl~~p-~~G~i~~~ 62 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKS------TIFSLLERFYQP-TAGEITID 62 (243)
T ss_dssp TEEEEEECCTTSSHH------HHHHHHTTSSCC-SBSCEEET
T ss_pred CCEEEEECCCCCCHH------HHHHHHhcCCCC-CCcEEEEC
Confidence 347899999999999 888887765542 24567664
No 481
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=58.88 E-value=3.3 Score=41.69 Aligned_cols=35 Identities=6% Similarity=0.057 Sum_probs=25.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...+.|.||.|+||| |+..++.-++.- ...+|.+.
T Consensus 32 Ge~~~liG~nGsGKS------TLlk~l~Gl~~p-~~G~i~~~ 66 (262)
T 1b0u_A 32 GDVISIIGSSGSGKS------TFLRCINFLEKP-SEGAIIVN 66 (262)
T ss_dssp TCEEEEECCTTSSHH------HHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHH------HHHHHHhcCCCC-CCcEEEEC
Confidence 457889999999999 888877765542 23467664
No 482
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=58.85 E-value=3.9 Score=36.46 Aligned_cols=13 Identities=15% Similarity=-0.061 Sum_probs=12.0
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 9 ~i~v~G~~~~GKs 21 (171)
T 1upt_A 9 RILILGLDGAGKT 21 (171)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 483
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=58.81 E-value=3.8 Score=37.71 Aligned_cols=13 Identities=15% Similarity=-0.041 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 27 ki~v~G~~~~GKS 39 (193)
T 2oil_A 27 KVVLIGESGVGKT 39 (193)
T ss_dssp EEEEESSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4689999999999
No 484
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=58.72 E-value=3.6 Score=37.53 Aligned_cols=13 Identities=15% Similarity=-0.141 Sum_probs=12.0
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 9 ~i~lvG~~gvGKS 21 (188)
T 2wjg_A 9 EIALIGNPNVGKS 21 (188)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 485
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=58.57 E-value=3.4 Score=40.64 Aligned_cols=26 Identities=4% Similarity=-0.070 Sum_probs=21.2
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 472 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~ 472 (651)
...+.|.||.|+||| |+..++.-++.
T Consensus 34 Ge~~~i~G~nGsGKS------TLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKT------SLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHH------HHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHH------HHHHHHhCCCc
Confidence 457889999999999 88887766554
No 486
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=58.50 E-value=4.4 Score=36.44 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=13.1
Q ss_pred CCceEEeCcCCCCCC
Q 006311 441 QSPYLLEGPLCNNFV 455 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT 455 (651)
..-++|.|++|+|||
T Consensus 8 ~~~i~v~G~~~~GKs 22 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKT 22 (178)
T ss_dssp CCEEEEESCTTTTHH
T ss_pred CCEEEEECCCCCCHH
Confidence 445789999999999
No 487
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=58.42 E-value=3.6 Score=36.97 Aligned_cols=13 Identities=8% Similarity=-0.161 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 11 ~i~v~G~~~~GKs 23 (181)
T 2fn4_A 11 KLVVVGGGGVGKS 23 (181)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4689999999999
No 488
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.15 E-value=3.5 Score=40.86 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=25.6
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEE
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 482 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVc 482 (651)
...+.|.||.|+||| |+..++.-+++- ....|.+.
T Consensus 32 Ge~~~l~G~nGsGKS------TLl~~l~Gl~~p-~~G~i~~~ 66 (240)
T 1ji0_A 32 GQIVTLIGANGAGKT------TTLSAIAGLVRA-QKGKIIFN 66 (240)
T ss_dssp TCEEEEECSTTSSHH------HHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHH------HHHHHHhCCCCC-CCceEEEC
Confidence 457889999999999 888877665542 23467664
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=57.80 E-value=5 Score=38.77 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=12.5
Q ss_pred CceEEeCcCCCCCC
Q 006311 442 SPYLLEGPLCNNFV 455 (651)
Q Consensus 442 ~p~LI~GPPGTGKT 455 (651)
.-++|.|++|+|||
T Consensus 17 ~gvli~G~SGaGKS 30 (181)
T 3tqf_A 17 MGVLITGEANIGKS 30 (181)
T ss_dssp EEEEEEESSSSSHH
T ss_pred EEEEEEcCCCCCHH
Confidence 35799999999999
No 490
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=57.75 E-value=4.1 Score=37.72 Aligned_cols=13 Identities=8% Similarity=-0.087 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 16 ki~v~G~~~~GKS 28 (206)
T 2bov_A 16 KVIMVGSGGVGKS 28 (206)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4689999999999
No 491
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=57.73 E-value=3.7 Score=39.54 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=19.8
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 471 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll 471 (651)
.....|.||+|+||| |+++.+.+.+
T Consensus 6 ~~iI~i~g~~GsGk~------ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGH------LVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHH------HHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHH------HHHHHHHHHh
Confidence 346789999999999 8877776544
No 492
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=57.72 E-value=35 Score=27.63 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=29.9
Q ss_pred CCCCCCCEEEEEECCCCceeEEEEEEEEecc-cEEEEEEcC
Q 006311 320 PFLLSRDFVYAQRSGGKSKKFQGFLYRVVKW-TTVLVEFEE 359 (651)
Q Consensus 320 Psl~~GD~V~v~~~~~~~~~y~G~V~~v~~~-~~V~L~~~~ 359 (651)
..+.+||.|+++-.+ ...|.|.|.+|... ..-.|+|..
T Consensus 12 ~~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 12 CKFEEGQDVLARWSD--GLFYLGTIKKINILKQSCFIIFED 50 (66)
T ss_dssp CCSCTTCEEEEECTT--SCEEEEEEEEEETTTTEEEEEETT
T ss_pred ccccCCCEEEEEEcc--CcEEEeEEEEEccCCcEEEEEEcc
Confidence 368899999999744 46899999999973 567777754
No 493
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=57.60 E-value=3.7 Score=41.38 Aligned_cols=37 Identities=5% Similarity=-0.041 Sum_probs=25.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCC-CCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-KSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~-~~rILVcA 483 (651)
...+.|.||.|+||| |+..++.-+....+ ..+|.+..
T Consensus 46 Ge~~~l~G~NGsGKS------TLlk~l~Gl~~~~p~~G~I~~~g 83 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKS------TLSATLAGREDYEVTGGTVEFKG 83 (267)
T ss_dssp TCEEEEECCTTSSHH------HHHHHHHTCTTCEEEEEEEEETT
T ss_pred CCEEEEECCCCCCHH------HHHHHHhCCCCCCCCCeEEEECC
Confidence 458899999999999 88887776531111 34676643
No 494
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=57.58 E-value=4.2 Score=44.23 Aligned_cols=24 Identities=4% Similarity=0.069 Sum_probs=18.1
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHH
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQI 470 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~ql 470 (651)
+..+++.|.||+||| |++..+...
T Consensus 39 ~~~IvlvGlpGsGKS------Tia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKT------YISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHH------HHHHHHHHH
T ss_pred cEEEEEECCCCCCHH------HHHHHHHHH
Confidence 346789999999999 666665543
No 495
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=57.58 E-value=3.6 Score=41.03 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=26.3
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhCCCCeEEEEc
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 483 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~~~~rILVcA 483 (651)
...+.|.||.|+||| |+..++.-++.- ....|.+..
T Consensus 35 Ge~~~i~G~nGsGKS------TLl~~l~Gl~~p-~~G~I~i~g 70 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKS------TLTKLIQRFYIP-ENGQVLIDG 70 (247)
T ss_dssp TCEEEEECSTTSSHH------HHHHHHTTSSCC-SEEEEEETT
T ss_pred CCEEEEECCCCCCHH------HHHHHHhcCCCC-CCcEEEECC
Confidence 457899999999999 888877665542 234677643
No 496
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=57.54 E-value=4.2 Score=36.74 Aligned_cols=13 Identities=8% Similarity=-0.087 Sum_probs=11.9
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 20 ki~v~G~~~~GKS 32 (187)
T 2a9k_A 20 KVIMVGSGGVGKS 32 (187)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 497
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=57.52 E-value=3.6 Score=37.57 Aligned_cols=14 Identities=7% Similarity=-0.154 Sum_probs=12.5
Q ss_pred CceEEeCcCCCCCC
Q 006311 442 SPYLLEGPLCNNFV 455 (651)
Q Consensus 442 ~p~LI~GPPGTGKT 455 (651)
.-++|.|++|+|||
T Consensus 24 ~~i~v~G~~~~GKS 37 (195)
T 3pqc_A 24 GEVAFVGRSNVGKS 37 (195)
T ss_dssp CEEEEEEBTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35789999999999
No 498
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=57.52 E-value=4.1 Score=37.30 Aligned_cols=13 Identities=8% Similarity=-0.112 Sum_probs=11.8
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 23 ki~vvG~~~~GKS 35 (190)
T 3con_A 23 KLVVVGAGGVGKS 35 (190)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4689999999999
No 499
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=57.42 E-value=4.2 Score=36.64 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=11.7
Q ss_pred ceEEeCcCCCCCC
Q 006311 443 PYLLEGPLCNNFV 455 (651)
Q Consensus 443 p~LI~GPPGTGKT 455 (651)
-++|.|++|+|||
T Consensus 12 ~i~v~G~~~~GKs 24 (180)
T 2g6b_A 12 KVMLVGDSGVGKT 24 (180)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3689999999999
No 500
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=57.37 E-value=6.8 Score=43.60 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=28.7
Q ss_pred CCceEEeCcCCCCCCCCchhHHHHHHHHHHHHhC-C-CCeEEEEccCh
Q 006311 441 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-P-KSRILICAPWN 486 (651)
Q Consensus 441 ~~p~LI~GPPGTGKT~s~~~~TlveaI~qll~~~-~-~~rILVcApSN 486 (651)
.+..+|.|++|+||| +.+-.++..++... | ..++.++=+..
T Consensus 167 ~pHlLIaG~TGSGKS-----t~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGAS-----VGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHH-----HHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHH-----HHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 468899999999999 76666676666543 2 23666665554
Done!