Your job contains 1 sequence.
>006313
MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF
DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI
YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA
QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER
YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD
GVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIST
LSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQ
IKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVS
QSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSL
SDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGV
DGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006313
(651 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1355322 - symbol:Exosc10 "exosome component 10" s... 608 3.4e-65 2
UNIPROTKB|E1C525 - symbol:EXOSC10 "Uncharacterized protei... 624 9.5e-65 2
RGD|2323986 - symbol:LOC100366273 "rCG30986-like" species... 594 3.2e-63 2
UNIPROTKB|D4A1X2 - symbol:LOC100366273 "Protein LOC100366... 594 6.8e-63 2
UNIPROTKB|Q01780 - symbol:EXOSC10 "Exosome component 10" ... 597 3.4e-62 2
UNIPROTKB|F1PI20 - symbol:EXOSC10 "Uncharacterized protei... 607 8.9e-59 1
UNIPROTKB|A7E323 - symbol:EXOSC10 "Uncharacterized protei... 602 1.2e-58 1
UNIPROTKB|B4DKG8 - symbol:EXOSC10 "Exosome component 10" ... 597 4.0e-58 1
UNIPROTKB|F1RHR9 - symbol:EXOSC10 "Uncharacterized protei... 594 2.0e-57 1
ZFIN|ZDB-GENE-040426-781 - symbol:exosc10 "exosome compon... 593 3.0e-57 1
UNIPROTKB|E1BMZ5 - symbol:EXOSC10 "Uncharacterized protei... 589 7.7e-57 1
DICTYBASE|DDB_G0271572 - symbol:exosc10 "exosome componen... 542 1.1e-54 3
POMBASE|SPAC1F3.01 - symbol:rrp6 "exosome 3'-5' exoribonu... 501 1.9e-49 2
FB|FBgn0038269 - symbol:Rrp6 "Rrp6" species:7227 "Drosoph... 489 1.6e-47 2
WB|WBGene00000796 - symbol:crn-3 species:6239 "Caenorhabd... 478 1.0e-46 2
TAIR|locus:504955936 - symbol:AT2G32415 species:3702 "Ara... 485 2.1e-45 1
ASPGD|ASPL0000094155 - symbol:AN11773 species:162425 "Eme... 471 1.8e-43 1
ASPGD|ASPL0000095540 - symbol:AN11774 species:162425 "Eme... 471 1.8e-43 1
UNIPROTKB|Q95Z10 - symbol:RRP6 "Rrp6p homologue" species:... 461 2.4e-42 1
SGD|S000005527 - symbol:RRP6 "Nuclear exosome exonuclease... 441 2.0e-39 1
CGD|CAL0000608 - symbol:RRP6 species:5476 "Candida albica... 399 1.2e-34 2
UNIPROTKB|Q59MB4 - symbol:RRP6 "Likely nuclear exosome co... 399 1.2e-34 2
TIGR_CMR|GSU_0443 - symbol:GSU_0443 "ribonuclease D, puta... 206 1.2e-13 1
TIGR_CMR|APH_0137 - symbol:APH_0137 "putative ribonucleas... 177 2.2e-10 1
TIGR_CMR|SPO_2167 - symbol:SPO_2167 "ribonuclease D" spec... 159 2.2e-08 1
TIGR_CMR|APH_1098 - symbol:APH_1098 "3''-5'' exonuclease ... 145 2.9e-08 1
UNIPROTKB|Q9KQL4 - symbol:rnd "Ribonuclease D" species:24... 155 6.0e-08 1
TIGR_CMR|VC_1984 - symbol:VC_1984 "ribonuclease D" specie... 155 6.0e-08 1
TIGR_CMR|ECH_0300 - symbol:ECH_0300 "putative ribonucleas... 149 2.9e-07 1
TIGR_CMR|NSE_0529 - symbol:NSE_0529 "3'-5' exonuclease fa... 130 4.9e-06 1
UNIPROTKB|O07183 - symbol:MT2755 "CONSERVED HYPOTHETICAL ... 134 1.6e-05 1
UNIPROTKB|P09155 - symbol:rnd "RNase D" species:83333 "Es... 131 2.6e-05 1
TIGR_CMR|SO_2580 - symbol:SO_2580 "ribonuclease D" specie... 123 0.00019 1
TIGR_CMR|ECH_1011 - symbol:ECH_1011 "3'-5' exonuclease fa... 116 0.00025 1
TIGR_CMR|SPO_0083 - symbol:SPO_0083 "exonuclease, putativ... 115 0.00033 1
TIGR_CMR|CPS_3518 - symbol:CPS_3518 "ribonuclease D" spec... 117 0.00093 1
>MGI|MGI:1355322 [details] [associations]
symbol:Exosc10 "exosome component 10" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=ISO] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0000460 "maturation of 5.8S rRNA"
evidence=ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004532 "exoribonuclease activity" evidence=ISO] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=ISO] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0071028 "nuclear
mRNA surveillance" evidence=ISO] [GO:0071034 "CUT catabolic
process" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
[GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of
transcription" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 MGI:MGI:1355322 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
GO:GO:0008408 GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819
GO:GO:0009048 GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394
eggNOG:COG0349 HOGENOM:HOG000001579 HOVERGEN:HBG051524 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P ChiTaRS:EXOSC10 GO:GO:0004532
GO:GO:0071048 EMBL:AF091392 EMBL:AF091505 EMBL:AF091506
EMBL:AF092074 EMBL:AF092075 EMBL:AF092076 EMBL:AF092077
EMBL:AF092078 EMBL:AF092079 EMBL:AF092080 EMBL:AF092081
EMBL:AF092082 EMBL:AF092083 EMBL:AL606969 EMBL:AL713995
IPI:IPI00342382 RefSeq:NP_057908.2 UniGene:Mm.266635
ProteinModelPortal:P56960 SMR:P56960 STRING:P56960
PhosphoSite:P56960 PaxDb:P56960 PRIDE:P56960
Ensembl:ENSMUST00000017408 GeneID:50912 KEGG:mmu:50912
GeneTree:ENSGT00390000015408 InParanoid:B1ARY9 NextBio:307899
Bgee:P56960 CleanEx:MM_EXOSC10 Genevestigator:P56960
GermOnline:ENSMUSG00000017264 Uniprot:P56960
Length = 887
Score = 608 (219.1 bits), Expect = 3.4e-65, Sum P(2) = 3.4e-65
Identities = 119/221 (53%), Positives = 157/221 (71%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 448 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
Score = 79 (32.9 bits), Expect = 3.4e-65, Sum P(2) = 3.4e-65
Identities = 54/207 (26%), Positives = 79/207 (38%)
Query: 438 QLKPVDVMKSEPNK-----PDLPFPSSFGSGEQTKP---IIEESNRVTVVSQ---SEEPA 486
Q K ++M+S N P L + + P I E SNR + SQ +EP
Sbjct: 678 QKKAQNIMQSFENPFRMFLPSLEHKAHISQAAKFDPSSKIYEISNRWKLASQVQVQKEPK 737
Query: 487 PAARPXXXXXXXXXXXXXXXXQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDLSTS 546
A + G LE A + +ALE + + SDL T
Sbjct: 738 EATKKKVAEQTAAREEAKEEAA-AGVLEQAIPVRQQ----AALENATKKRERATSDLRTI 792
Query: 547 FQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEK-SAGVDGNKR 605
Q+ K K + +P G P+D+ + + F D+K K S+ D NK
Sbjct: 793 EQK---QEKKRLKSSKKAKDPDPPG-KDFSPYDYSQSDFRA-FAGDSKSKPSSQFDPNKL 847
Query: 606 KPVNSGDKKKVSAVDQAQKDDGTKELS 632
P SG KK V A + ++ G K +S
Sbjct: 848 AP--SG-KKGVGA-KKCKQSVGNKSMS 870
>UNIPROTKB|E1C525 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591
OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:AADN02040751 IPI:IPI00588624
RefSeq:NP_001012748.1 UniGene:Gga.2286 ProteinModelPortal:E1C525
Ensembl:ENSGALT00000004879 GeneID:419454 KEGG:gga:419454
NextBio:20822508 Uniprot:E1C525
Length = 910
Score = 624 (224.7 bits), Expect = 9.5e-65, Sum P(2) = 9.5e-65
Identities = 121/221 (54%), Positives = 159/221 (71%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E F DP KV+HGAD D+ WLQ+DFG+YL NMF
Sbjct: 347 MQISTRTEDFIIDTLELRSDMS-ILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMF 405
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L ++SL++LL +C V+A+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYI
Sbjct: 406 DTHQAARLLNLGKHSLDHLLKLYCSVDADKQYQLADWRIRPLPEEMIQYARDDTHYLLYI 465
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ ++ + T L V++RS D+C + Y K L S+ SYL +Y Q LN
Sbjct: 466 YDKMR---EALWERGNEQPTQLKVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNT 522
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLA L WRD AR +DES GYVLPN L++IA++LP
Sbjct: 523 QQLAAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELP 563
Score = 59 (25.8 bits), Expect = 9.5e-65, Sum P(2) = 9.5e-65
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 558 RKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVS 617
++P ++ EE Q PFD+ ++ F +K K + V + + V +G KK +
Sbjct: 823 KRPKASQQPEELEAPKQFTPFDYSKFNFKV-FAGSSKSKQS-VQFDPARQVYTG--KKFA 878
Query: 618 AVDQAQKDDGTKELS 632
++ Q+ G + +S
Sbjct: 879 GANKLQQPAGNRSMS 893
>RGD|2323986 [details] [associations]
symbol:LOC100366273 "rCG30986-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 RGD:2323986 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 GeneTree:ENSGT00390000015408 IPI:IPI00211602
ProteinModelPortal:D4A2C3 Ensembl:ENSRNOT00000014593
ArrayExpress:D4A2C3 Uniprot:D4A2C3
Length = 859
Score = 594 (214.2 bits), Expect = 3.2e-63, Sum P(2) = 3.2e-63
Identities = 118/221 (53%), Positives = 156/221 (70%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED +VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTED-IVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 386
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 387 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 446
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 447 YDRMRLELW---ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 503
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 504 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 544
Score = 73 (30.8 bits), Expect = 3.2e-63, Sum P(2) = 3.2e-63
Identities = 35/127 (27%), Positives = 52/127 (40%)
Query: 527 SALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQ 586
+ALE + + SDL T Q+ K K + +P G P+D+ Q
Sbjct: 745 AALENATKKRERATSDLRTIEQK---QEKKRLKSSKKAKDPDPPG-KDFSPYDYS----Q 796
Query: 587 IEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQ--GRRRSAFPATG 644
+FG A + +K KP + D KV+ +K G K+ Q G + +FPA G
Sbjct: 797 SDFGAFAGD-------SKSKPSSQFDPNKVAP--SGKKCFGAKKFKQSVGNKSMSFPA-G 846
Query: 645 NRSATFR 651
FR
Sbjct: 847 KSDRGFR 853
>UNIPROTKB|D4A1X2 [details] [associations]
symbol:LOC100366273 "Protein LOC100366273" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
RGD:2323986 GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF
OrthoDB:EOG4X6C7P GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 IPI:IPI00359630 PRIDE:D4A1X2
Ensembl:ENSRNOT00000014629 ArrayExpress:D4A1X2 Uniprot:D4A1X2
Length = 884
Score = 594 (214.2 bits), Expect = 6.8e-63, Sum P(2) = 6.8e-63
Identities = 118/221 (53%), Positives = 156/221 (70%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED +VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTED-IVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 386
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 387 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 446
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 447 YDRMRLELW---ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 503
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 504 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 544
Score = 73 (30.8 bits), Expect = 6.8e-63, Sum P(2) = 6.8e-63
Identities = 35/127 (27%), Positives = 52/127 (40%)
Query: 527 SALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQ 586
+ALE + + SDL T Q+ K K + +P G P+D+ Q
Sbjct: 770 AALENATKKRERATSDLRTIEQK---QEKKRLKSSKKAKDPDPPG-KDFSPYDYS----Q 821
Query: 587 IEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQ--GRRRSAFPATG 644
+FG A + +K KP + D KV+ +K G K+ Q G + +FPA G
Sbjct: 822 SDFGAFAGD-------SKSKPSSQFDPNKVAP--SGKKCFGAKKFKQSVGNKSMSFPA-G 871
Query: 645 NRSATFR 651
FR
Sbjct: 872 KSDRGFR 878
>UNIPROTKB|Q01780 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IMP] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0071048 "nuclear retention of unspliced
pre-mRNA at the site of transcription" evidence=IMP] [GO:0035327
"transcriptionally active chromatin" evidence=IMP] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 EMBL:CH471130
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
EMBL:AJ300188 GO:GO:0008408 GO:GO:0035327 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460 GO:GO:0000176
GO:GO:0071034 EMBL:X66113 EMBL:L01457 EMBL:AL109811 EMBL:BC039901
EMBL:BC073788 IPI:IPI00009464 IPI:IPI00220336 PIR:A43920 PIR:JH0796
RefSeq:NP_001001998.1 RefSeq:NP_002676.1 UniGene:Hs.632368 PDB:2CPR
PDB:3SAF PDB:3SAG PDB:3SAH PDBsum:2CPR PDBsum:3SAF PDBsum:3SAG
PDBsum:3SAH ProteinModelPortal:Q01780 SMR:Q01780 IntAct:Q01780
MINT:MINT-1143843 STRING:Q01780 PhosphoSite:Q01780 DMDM:8928564
SWISS-2DPAGE:Q01780 PaxDb:Q01780 PRIDE:Q01780 DNASU:5394
Ensembl:ENST00000304457 Ensembl:ENST00000376936 GeneID:5394
KEGG:hsa:5394 UCSC:uc001asa.3 UCSC:uc001asb.3 CTD:5394
GeneCards:GC01M011126 HGNC:HGNC:9138 HPA:HPA028470 HPA:HPA028484
MIM:605960 neXtProt:NX_Q01780 PharmGKB:PA33464 eggNOG:COG0349
HOGENOM:HOG000001579 HOVERGEN:HBG051524 InParanoid:Q01780 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P PhylomeDB:Q01780 ChiTaRS:EXOSC10
EvolutionaryTrace:Q01780 GenomeRNAi:5394 NextBio:20912
ArrayExpress:Q01780 Bgee:Q01780 CleanEx:HS_EXOSC10
Genevestigator:Q01780 GermOnline:ENSG00000171824 GO:GO:0004532
GO:GO:0071048 Uniprot:Q01780
Length = 885
Score = 597 (215.2 bits), Expect = 3.4e-62, Sum P(2) = 3.4e-62
Identities = 117/221 (52%), Positives = 155/221 (70%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
Score = 63 (27.2 bits), Expect = 3.4e-62, Sum P(2) = 3.4e-62
Identities = 27/95 (28%), Positives = 42/95 (44%)
Query: 557 NRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKV 616
++KP PE E+ + P+D+ + + G + S+ D NK+ P SG KK
Sbjct: 802 SKKPKDPEPPEK-----EFTPYDYSQSDFKAFAGNSKSKVSSQFDPNKQTP--SG--KKC 852
Query: 617 SAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 651
A + ++ G K +S FP TG FR
Sbjct: 853 IAAKKIKQSVGNKSMS-------FP-TGKSDRGFR 879
>UNIPROTKB|F1PI20 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 OMA:GNKSMSF
GeneTree:ENSGT00390000015408 EMBL:AAEX03001937
Ensembl:ENSCAFT00000026485 Uniprot:F1PI20
Length = 908
Score = 607 (218.7 bits), Expect = 8.9e-59, P = 8.9e-59
Identities = 121/221 (54%), Positives = 155/221 (70%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DPT KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 351 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMF 409
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 410 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 469
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E L V++RS D+C + + K L ++ SYL +Y Q LN
Sbjct: 470 YDKMRLELWERGNEQP---VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNT 526
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 527 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 567
>UNIPROTKB|A7E323 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 CTD:5394 eggNOG:COG0349 HOGENOM:HOG000001579
HOVERGEN:HBG051524 KO:K12591 OrthoDB:EOG4X6C7P
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 EMBL:BC151674
IPI:IPI00904680 RefSeq:NP_001095656.1 UniGene:Bt.59475 SMR:A7E323
STRING:A7E323 Ensembl:ENSBTAT00000057296 GeneID:535340
KEGG:bta:535340 NextBio:20876706 Uniprot:A7E323
Length = 702
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 119/221 (53%), Positives = 155/221 (70%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>UNIPROTKB|B4DKG8 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 EMBL:AL109811 UniGene:Hs.632368 HGNC:HGNC:9138
HOVERGEN:HBG051524 ChiTaRS:EXOSC10 EMBL:AK296559 IPI:IPI01010048
SMR:B4DKG8 STRING:B4DKG8 Ensembl:ENST00000544779 Uniprot:B4DKG8
Length = 679
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 117/221 (52%), Positives = 155/221 (70%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>UNIPROTKB|F1RHR9 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591 OMA:GNKSMSF
GO:GO:0004532 GO:GO:0071048 GeneTree:ENSGT00390000015408
EMBL:CU694468 RefSeq:XP_003127631.2 UniGene:Ssc.23524
Ensembl:ENSSSCT00000003785 GeneID:100511264 KEGG:ssc:100511264
Uniprot:F1RHR9
Length = 886
Score = 594 (214.2 bits), Expect = 2.0e-57, P = 2.0e-57
Identities = 118/221 (53%), Positives = 153/221 (69%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M++ L E L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLALWERGNEQP---AQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>ZFIN|ZDB-GENE-040426-781 [details] [associations]
symbol:exosc10 "exosome component 10" species:7955
"Danio rerio" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
ZFIN:ZDB-GENE-040426-781 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
CTD:5394 KO:K12591 OMA:GNKSMSF GeneTree:ENSGT00390000015408
EMBL:CR318666 IPI:IPI00860469 RefSeq:NP_957383.2 UniGene:Dr.75500
Ensembl:ENSDART00000137410 GeneID:394064 KEGG:dre:394064
NextBio:20815021 ArrayExpress:F1Q5Q7 Bgee:F1Q5Q7 Uniprot:F1Q5Q7
Length = 899
Score = 593 (213.8 bits), Expect = 3.0e-57, P = 3.0e-57
Identities = 120/268 (44%), Positives = 169/268 (63%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL+LR ++ L E F DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 327 MQISTREEDFIIDTLELRSEMY-ILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 385
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L L RNSL++LL +C V+++K YQ ADWR+RPLPDEML+YA+ DTHYLLY+
Sbjct: 386 DTHHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYV 445
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD ++ L T + +V+ +S D+ + Y K + +E+SY+ +Y Q N
Sbjct: 446 YDRVRADLFD---GGNGQATLIQQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKKSFNT 502
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQLA + WRD +AR +DESTGY+LPN +++IA +LP + + +
Sbjct: 503 QQLAAFRLMYAWRDKLAREEDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPPLVRQ 562
Query: 241 YMGPVLSIIKNSMQNAA-NFEVIAQKLK 267
+ + +IK + + EV+AQK K
Sbjct: 563 QINELHQLIKQARETPLLKAEVVAQKRK 590
>UNIPROTKB|E1BMZ5 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 IPI:IPI00698678
Ensembl:ENSBTAT00000003354 ArrayExpress:E1BMZ5 Uniprot:E1BMZ5
Length = 890
Score = 589 (212.4 bits), Expect = 7.7e-57, P = 7.7e-57
Identities = 119/224 (53%), Positives = 155/224 (69%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR---PLPDEMLRYAREDTHYL 117
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+R PLP+EML YAR+DTHYL
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRNPRPLPEEMLSYARDDTHYL 447
Query: 118 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 177
LYIYD M+++L E T L V++RS D+C + + K + ++ SYL +Y Q
Sbjct: 448 LYIYDKMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKH 504
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
LN QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 LNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 548
>DICTYBASE|DDB_G0271572 [details] [associations]
symbol:exosc10 "exosome component 10" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00474 dictyBase:DDB_G0271572 GO:GO:0005730 GO:GO:0000166
GenomeReviews:CM000151_GR GO:GO:0003676 EMBL:AAFI02000006
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
RefSeq:XP_645586.2 ProteinModelPortal:Q55AW0 STRING:Q55AW0
EnsemblProtists:DDB0233752 GeneID:8618039 KEGG:ddi:DDB_G0271572
OMA:LRSHIHM ProtClustDB:CLSZ2847850 Uniprot:Q55AW0
Length = 1195
Score = 542 (195.9 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 113/246 (45%), Positives = 162/246 (65%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+EDF++DTL LR + L +VF +P+ KV+HG+D DI WLQRDFG+Y+ NMF
Sbjct: 287 MQISTRSEDFLIDTLLLRSHIH-MLNQVFTNPSIVKVLHGSDSDIKWLQRDFGVYIVNMF 345
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASR+L+ SL +LL +C ++ANK+YQ ADWR+R LP+EM++YAREDTHYLLYI
Sbjct: 346 DTGQASRILEYPSASLAFLLKFYCAIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYI 405
Query: 121 YDIMKIKLSSMPKE-------SENSDTPLT---------EVYKRSYDVCRQLYEKELLSE 164
YD ++ +L S + S N+ T T EV +RS ++ YEK++L +
Sbjct: 406 YDRLRNELISKGNKNLGSSGTSTNTSTSTTTQLNNHLLLEVLRRSRELSLLRYEKDILDD 465
Query: 165 NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 224
NS+++ + QL V+ L WR+ +AR +DES Y+LPN+ ++ I ++ PT+
Sbjct: 466 NSHINFAKKLNLQYSPTQLNVLKVLYHWREGLARDEDESVRYILPNQMMLTIVERQPTSV 525
Query: 225 AKLRRL 230
+L L
Sbjct: 526 QELLTL 531
Score = 45 (20.9 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 533 KQDETMSLS-DLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLK 576
K++ ++S + LSTS S NN K K E + F LK
Sbjct: 960 KENSSISATTSLSTSPSSLLDSTNNPPKSKKDENASVTDTFSFLK 1004
Score = 44 (20.5 bits), Expect = 1.4e-54, Sum P(3) = 1.4e-54
Identities = 23/106 (21%), Positives = 39/106 (36%)
Query: 546 SFQECFHSANNNRKPGKPERS-EEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNK 604
S QE + +N NR+ K ++ +E S + K K D N
Sbjct: 938 SMQEIYQLSNMNRRRNKEKKKLKENSSISATTSLSTSPSSLLDSTNNPPKSKK---DENA 994
Query: 605 RKPVNSGDKKKVSAVDQAQKDDGTKELSQG-RRRSAFPATGNRSAT 649
K++ ++ Q D K +SQ +++ A AT + T
Sbjct: 995 SVTDTFSFLKEIGWINNEQSADSFKPVSQQLQQQPASSATATTTTT 1040
Score = 39 (18.8 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 343 HPGEAIASENKEATHISTLSSSGQSRDLNACKSP 376
H ++ ++ N T +T +++ S +LN + P
Sbjct: 903 HSNDSTSTSNSTTTTTTTTTANTSSSNLNNNQVP 936
>POMBASE|SPAC1F3.01 [details] [associations]
symbol:rrp6 "exosome 3'-5' exoribonuclease subunit Rrp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 PomBase:SPAC1F3.01 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0071038 SUPFAM:SSF47819
GO:GO:0000176 GO:GO:0000175 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 eggNOG:COG0349 KO:K12591
PIR:T38769 RefSeq:NP_593004.2 ProteinModelPortal:Q10146
STRING:Q10146 EnsemblFungi:SPAC1F3.01.1 GeneID:2543630
KEGG:spo:SPAC1F3.01 OMA:YGIVCLM OrthoDB:EOG4SJ8P0 NextBio:20804636
Uniprot:Q10146
Length = 777
Score = 501 (181.4 bits), Expect = 1.9e-49, Sum P(2) = 1.9e-49
Identities = 113/297 (38%), Positives = 171/297 (57%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D++VDTL+LR ++ L VF +P KV HGA DI+WLQRDFG+Y+ N+F
Sbjct: 259 MQISNREKDWIVDTLELREELEA-LNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLF 317
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++VL E + L +LL +C +A+K YQ ADWR+RPLP EML+YA+ DTHYLLYI
Sbjct: 318 DTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYI 377
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQ 174
+D ++ +L S K +E + + V+ S + + YE E L + + ++
Sbjct: 378 WDHLRNELIS--KSAERKENLMQSVFNSSKQISLRKYELEPYDPIYGLGTDGWRNVLTKF 435
Query: 175 GAG--LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 232
G+ + + L + L +WRD +AR +DES YVLPNR LI IA P AA + + K
Sbjct: 436 GSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISK 495
Query: 233 SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNL 289
Y+ ++ +++ + + N +V + K + EV + + V S+ L
Sbjct: 496 QLTPIARMYVEDIVKVVQEA-EKLYNEQV--DREKSQFKEVEKQNQPLAVFSESNTL 549
Score = 40 (19.1 bits), Expect = 1.9e-49, Sum P(2) = 1.9e-49
Identities = 19/83 (22%), Positives = 34/83 (40%)
Query: 524 SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKP--ERSEEPSGFLQLKPFDFE 581
+A +L K+ E + + DL + Q+ S N+++P P ER+E D E
Sbjct: 631 AANPSLNGEKKQEPIVIRDLGLNKQKRDSSKLNHKEPSNPIEERNE-----------DIE 679
Query: 582 AARKQIEFGEDAKEKSAGVDGNK 604
+ + K+K + K
Sbjct: 680 PSEASTSVSKKRKQKKKKKNSGK 702
>FB|FBgn0038269 [details] [associations]
symbol:Rrp6 "Rrp6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005652 "nuclear lamina" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
[GO:0071027 "nuclear RNA surveillance" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 EMBL:AE014297
GO:GO:0005730 GO:GO:0000166 GO:GO:0006378 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0010468 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0005652 GO:GO:0000176 KO:K12591 GeneTree:ENSGT00390000015408
GO:GO:0071027 RefSeq:NP_001097795.1 UniGene:Dm.7279
ProteinModelPortal:Q9VFF3 SMR:Q9VFF3 IntAct:Q9VFF3 STRING:Q9VFF3
PRIDE:Q9VFF3 EnsemblMetazoa:FBtr0113235 GeneID:41798
KEGG:dme:Dmel_CG7292 UCSC:CG7292-RB CTD:41798 FlyBase:FBgn0038269
InParanoid:Q9VFF3 OMA:FERITTN OrthoDB:EOG4THT8C PhylomeDB:Q9VFF3
GenomeRNAi:41798 NextBio:825622 ArrayExpress:Q9VFF3 Bgee:Q9VFF3
Uniprot:Q9VFF3
Length = 900
Score = 489 (177.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 97/221 (43%), Positives = 144/221 (65%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMF
Sbjct: 312 VQMSTRSKDYIFDTLILRDDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMF 370
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+
Sbjct: 371 DTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYV 430
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y M L + + +E L VY++S DVC++ Y K + S+L + +
Sbjct: 431 YGRMTNDL--LQQHAEPG--LLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDN 486
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 487 RQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 527
Score = 41 (19.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 417 KLEQIKSSVNLPFHSIFARDEQLKPVDVM-KSEPNK--PDLPFPSSFGSGEQTKPIIEES 473
+LE+I+ +LP ++ R+ ++V K E K P L P+ +Q+KP EE
Sbjct: 597 QLEEIRD--DLP--TLLKRNSTTGKLEVPNKEEVAKVDPTLAAPAMALFEKQSKPTQEEE 652
Query: 474 NR 475
R
Sbjct: 653 QR 654
>WB|WBGene00000796 [details] [associations]
symbol:crn-3 species:6239 "Caenorhabditis elegans"
[GO:0006396 "RNA processing" evidence=IEA;TAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0043277 "apoptotic cell
clearance" evidence=IDA] [GO:0000178 "exosome (RNase complex)"
evidence=TAS] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0006309 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
GO:GO:0043277 EMBL:Z49909 KO:K12591 GeneTree:ENSGT00390000015408
EMBL:AY303577 PIR:T19246 RefSeq:NP_496283.1 UniGene:Cel.7455
ProteinModelPortal:G5EBX6 SMR:G5EBX6 PRIDE:G5EBX6
EnsemblMetazoa:C14A4.4a GeneID:3565889 KEGG:cel:CELE_C14A4.4
CTD:3565889 WormBase:C14A4.4a OMA:TEEEHPY NextBio:958247
Uniprot:G5EBX6
Length = 876
Score = 478 (173.3 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 109/300 (36%), Positives = 168/300 (56%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR EDF++D + VG L E F +P KV HG+D D++WLQRD+G+++ N+F
Sbjct: 319 IQISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVFHGSDSDVLWLQRDYGVHVVNLF 377
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY
Sbjct: 378 DTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYS 437
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+++ +L + + D L VY S D+C ++Y+K + + YL + LN
Sbjct: 438 YDMLREQLL----KQDTKD--LANVYSESSDLCIKVYKKPVFNPKGYLTEIKFRFT-LNT 490
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+Q + L +WRDV+ARA+DES +VLPN ++ +++ LP + ++++
Sbjct: 491 RQDYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQ 550
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD 300
G +L II + E + KE ++E ++ DT + I +V + +D
Sbjct: 551 RTGDILKIIVEARD--VKLEKVGLSAKERN---DAQEARGVMNDTMDH--ITSVLKSKID 603
Score = 172 (65.6 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 80/353 (22%), Positives = 161/353 (45%)
Query: 139 DTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 197
DT L VY S D+C ++Y+K + + YL + LN +Q + L +WRDV+A
Sbjct: 449 DTKDLANVYSESSDLCIKVYKKPVFNPKGYLTEIKFRFT-LNTRQDYALTHLFKWRDVVA 507
Query: 198 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 257
RA+DES +VLPN ++ +++ LP + ++++ G +L II
Sbjct: 508 RAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQRTGDILKII-------- 559
Query: 258 NFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYT 317
V A+ +K E++ ++++E D + N +++D + +++ + + ++T
Sbjct: 560 ---VEARDVKLEKVGLSAKERN----DAQEARGVMN---DTMDHITSVLKSKIDF--SHT 607
Query: 318 QLKQEPPKVGSSVAELDRNGLGSFAHPGEAIAS--ENKEATHISTLSSSGQSRDLNACKS 375
+ +E ++ + + D E++ S + E + T+ + + KS
Sbjct: 608 RFDEERGEI--YIDKTDEGMDIELKDHKESLLSVLQTAEIPSVETMIVVEKGK-----KS 660
Query: 376 PSPRVTEAAVQALK--KPNRGFGALLGNPKRKFDGEKKDKEAMKLEQ------IKSSVNL 427
+ +V + + K P + ++ +++ + E+K+ E KLE+ + S +
Sbjct: 661 DNQKVKKLLNELDKFVTPFECYQMMMITKEKQEEEERKEAERKKLEEGDLPKTMFSHHDA 720
Query: 428 PFHSIFARDEQLKPVDVMK---SEPNKPDLPFPSSFGSGEQTKPIIEESNRVT 477
P + D +L VD +K +PNKP P PS ++P I + +R T
Sbjct: 721 PINRKPEFDAKLLNVDTLKLVPDDPNKPKDPEPSPMEESS-SEPQIFDPSRFT 772
Score = 44 (20.5 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 581 EAARKQIEFGEDAKEKSAGVDGNKRK-----PVNSGDKKKV--SAVDQAQKDD 626
+AAR+ I+ E S+ D K+K PV D +K SA ++ +D+
Sbjct: 787 DAARRNIDVSVVLGESSSSSDPKKKKSDDDAPVEDFDYEKADSSAFEKPVRDN 839
Score = 42 (19.8 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
Identities = 22/103 (21%), Positives = 40/103 (38%)
Query: 369 DLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLP 428
D N K P P E ++ +P + +P R D + K+AMK ++ + N+
Sbjct: 744 DPNKPKDPEPSPME---ESSSEPQ------IFDPSRFTDDQLLSKKAMKRKRDAARRNID 794
Query: 429 FHSIFARDEQLKPVDVMKSEPNKP--DLPFPSSFGSGEQTKPI 469
+ KS+ + P D + + S + KP+
Sbjct: 795 VSVVLGESSSSSDPKKKKSDDDAPVEDFDYEKADSSAFE-KPV 836
>TAIR|locus:504955936 [details] [associations]
symbol:AT2G32415 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
SMART:SM00474 EMBL:CP002685 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
KO:K12591 IPI:IPI00520495 RefSeq:NP_850189.5 UniGene:At.47141
ProteinModelPortal:F4ITQ6 SMR:F4ITQ6 PRIDE:F4ITQ6
EnsemblPlants:AT2G32415.1 GeneID:817803 KEGG:ath:AT2G32415
OMA:ICVGCGE Uniprot:F4ITQ6
Length = 891
Score = 485 (175.8 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 110/241 (45%), Positives = 142/241 (58%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMF
Sbjct: 160 IQISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMF 218
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI
Sbjct: 219 DTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYI 278
Query: 121 YDIMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKEL------LSENS--YLH 169
D + +L + +S + D L E +RS C QLY KE + +S Y H
Sbjct: 279 ADSLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRH 338
Query: 170 IYG---LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
+ G LNA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT +
Sbjct: 339 LNGHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEE 396
Query: 227 L 227
+
Sbjct: 397 I 397
>ASPGD|ASPL0000094155 [details] [associations]
symbol:AN11773 species:162425 "Emericella nidulans"
[GO:0071036 "nuclear polyadenylation-dependent snoRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0000973 "posttranscriptional tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0071037
"nuclear polyadenylation-dependent snRNA catabolic process"
evidence=IEA] [GO:0071040 "nuclear polyadenylation-dependent
antisense transcript catabolic process" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 InterPro:IPR019465
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 Pfam:PF10392 PROSITE:PS50967
SMART:SM00474 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0008408 EMBL:AACD01000084
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
OrthoDB:EOG4SJ8P0 RefSeq:XP_662605.1 ProteinModelPortal:Q5B379
STRING:Q5B379 EnsemblFungi:CADANIAT00005393 GeneID:2872798
KEGG:ani:AN5001.2 Uniprot:Q5B379
Length = 1297
Score = 471 (170.9 bits), Expect = 1.8e-43, P = 1.8e-43
Identities = 144/448 (32%), Positives = 211/448 (47%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP K+ HG+ DI+WLQRD G+Y+ MF
Sbjct: 271 MQISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMF 330
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL+YLLH F A+K+YQ ADWR+RPLP M YAR DTHYLLYI
Sbjct: 331 DTYHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYI 390
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQ 174
YD ++ +L + S D + V ++S Q YE+ + + +
Sbjct: 391 YDNLRNELLT---NSTPEDNLVDYVLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRS 447
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
A L+++Q AV+ + EWRD +AR +DE V P L +A+ +P L R + S
Sbjct: 448 PAILSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTM-SP 506
Query: 235 HSYIERYMGP-VLSIIKNSMQNAAN---FEVIAQKLKEERMEVASEETEVLVLDTSSNLK 290
+ I + P +L +IK + A + + K +V + + D S
Sbjct: 507 MTPIAKDRAPDLLQVIKTAKAEGATGPEWRDVYVKPTRGLPQVEAPPSPPTAQDGS---- 562
Query: 291 IPNVGR-ESVDGVDALVGT-TMPHPPAYT--------QLKQEPPKVGSSVAELDRNGLGS 340
P R E+ A++ T T P P Y+ +L P + +VAE+
Sbjct: 563 FPTASRYETSQFWGAVLDTQTPPLSPEYSLAASAEALRLSLPIPPMPRTVAEVQVAQPPK 622
Query: 341 FAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGA--- 397
P A E ++ I T+ G R A P P E + Q+ ++P
Sbjct: 623 PTSPTPAPKKEEEDKNKIFTVKELGGPRKRKAAPQP-PAEVETSSQS-EEPQAELDLDEI 680
Query: 398 --LLGNPKRKFDGEKKDKEAMKLEQIKS 423
+G+P K K+ +E K +Q +S
Sbjct: 681 PIEIGSPPSKKQRRKEKREKKKAKQNQS 708
>ASPGD|ASPL0000095540 [details] [associations]
symbol:AN11774 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
InterPro:IPR019465 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
Pfam:PF10392 PROSITE:PS50967 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 EMBL:BN001303
GO:GO:0008408 EMBL:AACD01000084 SUPFAM:SSF47819 GO:GO:0000176
eggNOG:COG0349 KO:K12591 OrthoDB:EOG4SJ8P0 RefSeq:XP_662605.1
ProteinModelPortal:Q5B379 STRING:Q5B379
EnsemblFungi:CADANIAT00005393 GeneID:2872798 KEGG:ani:AN5001.2
Uniprot:Q5B379
Length = 1297
Score = 471 (170.9 bits), Expect = 1.8e-43, P = 1.8e-43
Identities = 144/448 (32%), Positives = 211/448 (47%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP K+ HG+ DI+WLQRD G+Y+ MF
Sbjct: 271 MQISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMF 330
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL+YLLH F A+K+YQ ADWR+RPLP M YAR DTHYLLYI
Sbjct: 331 DTYHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYI 390
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQ 174
YD ++ +L + S D + V ++S Q YE+ + + +
Sbjct: 391 YDNLRNELLT---NSTPEDNLVDYVLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRS 447
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
A L+++Q AV+ + EWRD +AR +DE V P L +A+ +P L R + S
Sbjct: 448 PAILSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTM-SP 506
Query: 235 HSYIERYMGP-VLSIIKNSMQNAAN---FEVIAQKLKEERMEVASEETEVLVLDTSSNLK 290
+ I + P +L +IK + A + + K +V + + D S
Sbjct: 507 MTPIAKDRAPDLLQVIKTAKAEGATGPEWRDVYVKPTRGLPQVEAPPSPPTAQDGS---- 562
Query: 291 IPNVGR-ESVDGVDALVGT-TMPHPPAYT--------QLKQEPPKVGSSVAELDRNGLGS 340
P R E+ A++ T T P P Y+ +L P + +VAE+
Sbjct: 563 FPTASRYETSQFWGAVLDTQTPPLSPEYSLAASAEALRLSLPIPPMPRTVAEVQVAQPPK 622
Query: 341 FAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGA--- 397
P A E ++ I T+ G R A P P E + Q+ ++P
Sbjct: 623 PTSPTPAPKKEEEDKNKIFTVKELGGPRKRKAAPQP-PAEVETSSQS-EEPQAELDLDEI 680
Query: 398 --LLGNPKRKFDGEKKDKEAMKLEQIKS 423
+G+P K K+ +E K +Q +S
Sbjct: 681 PIEIGSPPSKKQRRKEKREKKKAKQNQS 708
>UNIPROTKB|Q95Z10 [details] [associations]
symbol:RRP6 "Rrp6p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AJ309000
ProteinModelPortal:Q95Z10 IntAct:Q95Z10 STRING:Q95Z10
EuPathDB:TriTrypDB:Tb427.04.1630 EuPathDB:TriTrypDB:Tb927.4.1630
Uniprot:Q95Z10
Length = 703
Score = 461 (167.3 bits), Expect = 2.4e-42, P = 2.4e-42
Identities = 102/258 (39%), Positives = 154/258 (59%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQISTRT+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+
Sbjct: 254 MQISTRTQDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNL 311
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY
Sbjct: 312 FDTSIALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLY 370
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGL 178
+YD +K L + + + L V++ S + + YEK L + +Y G GL
Sbjct: 371 VYDRLKQLLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGL 429
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
++ QL V + WRD+ AR D+S V+ ++ IA +LPT+A ++ + +
Sbjct: 430 SSPQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAV 489
Query: 239 ERYMGPVLSIIKNSMQNA 256
+ +L I+K+++ +A
Sbjct: 490 RTNVMKLLQIVKDAIGSA 507
>SGD|S000005527 [details] [associations]
symbol:RRP6 "Nuclear exosome exonuclease component"
species:4932 "Saccharomyces cerevisiae" [GO:0034475 "U4 snRNA
3'-end processing" evidence=IGI;IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA;IDA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IMP] [GO:0071049 "nuclear retention of pre-mRNA with
aberrant 3'-ends at the site of transcription" evidence=IGI]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IGI;IMP] [GO:0071037 "nuclear
polyadenylation-dependent snRNA catabolic process" evidence=IMP]
[GO:0071040 "nuclear polyadenylation-dependent antisense transcript
catabolic process" evidence=IMP] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IMP] [GO:0071036 "nuclear
polyadenylation-dependent snoRNA catabolic process" evidence=IMP]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IGI;IMP] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000973
"posttranscriptional tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IMP] [GO:0071033 "nuclear retention of
pre-mRNA at the site of transcription" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 SGD:S000005527
GO:GO:0005730 EMBL:BK006948 GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071039 GO:GO:0071035 GO:GO:0071036
GO:GO:0071037 GO:GO:0071038 EMBL:U43491 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0000176 GO:GO:0000175 GO:GO:0000467
GO:GO:0071042 GO:GO:0071051 eggNOG:COG0349 KO:K12591
GeneTree:ENSGT00390000015408 GO:GO:0000973 GO:GO:0034475
GO:GO:0034476 GO:GO:0071049 GO:GO:0071040 GO:GO:0034473 OMA:YGIVCLM
OrthoDB:EOG4SJ8P0 EMBL:Z74909 EMBL:AY692850 PIR:S61984
RefSeq:NP_014643.1 PDB:1M0Y PDB:2HBJ PDB:2HBK PDB:2HBL PDB:2HBM
PDBsum:1M0Y PDBsum:2HBJ PDBsum:2HBK PDBsum:2HBL PDBsum:2HBM
ProteinModelPortal:Q12149 SMR:Q12149 DIP:DIP-4560N IntAct:Q12149
MINT:MINT-534618 STRING:Q12149 PaxDb:Q12149 EnsemblFungi:YOR001W
GeneID:854162 KEGG:sce:YOR001W CYGD:YOR001w HOGENOM:HOG000196525
EvolutionaryTrace:Q12149 NextBio:975938 Genevestigator:Q12149
GermOnline:YOR001W Uniprot:Q12149
Length = 733
Score = 441 (160.3 bits), Expect = 2.0e-39, P = 2.0e-39
Identities = 113/303 (37%), Positives = 165/303 (54%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPK------ESENSDTPLTEVYK-RSYDVCRQLYEKELLSENSYLHIYGL 173
YD ++ KL K ES N E K R ++Y + + S I
Sbjct: 373 YDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSP--IEKESPWKILMY 430
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 233
Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT + L
Sbjct: 431 Q-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNG 489
Query: 234 KHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKI 291
++ + + ++I+++++N N EE + S ET+ ++L+T S +I
Sbjct: 490 VTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETISVPQI 542
Query: 292 PNV 294
+V
Sbjct: 543 RDV 545
>CGD|CAL0000608 [details] [associations]
symbol:RRP6 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0071036 "nuclear polyadenylation-dependent snoRNA
catabolic process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0000973 "posttranscriptional tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071037 "nuclear polyadenylation-dependent snRNA catabolic
process" evidence=IEA] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IEA] [GO:0071040 "nuclear polyadenylation-dependent
antisense transcript catabolic process" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00474 CGD:CAL0000608 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 GO:GO:0035690 SUPFAM:SSF53098
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AACQ01000231
RefSeq:XP_710869.1 ProteinModelPortal:Q59MB4 SMR:Q59MB4
STRING:Q59MB4 GeneID:3647535 KEGG:cal:CaO19.58 Uniprot:Q59MB4
Length = 786
Score = 399 (145.5 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 105/301 (34%), Positives = 162/301 (53%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 273 MQISNREQDWIIDTLALRDDL-TVLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLF 331
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+I
Sbjct: 332 DTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFI 391
Query: 121 YDIMKIKLSSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ----- 174
YD +K KL K S+ D+ +V KR ++ + S +
Sbjct: 392 YDQLKNKLIDAEKLSQVLYDS--RQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNPKEPW 449
Query: 175 GAGLNAQQLA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-QLPTTAAKLR 228
G+ ++ + VV L +WRD++A+ DES Y++PN+ L+ +A + P K+
Sbjct: 450 GSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVL 509
Query: 229 RLLKSKHSYIERYMGPVLSIIKNSMQNA-AN-FEVIAQKLKEERMEVASEETEVLVLDTS 286
+ + + ++I+ +++ AN ++++ Q K++ SEE + +D +
Sbjct: 510 NVSYRISDAVRINAKELANLIEKTLKETEANDWDLVDQWNKQQ-----SEEQDDNSIDAA 564
Query: 287 S 287
S
Sbjct: 565 S 565
Score = 46 (21.3 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 585 KQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVS---AVDQAQKDDGTKELSQGRRRSAFP 641
+ I+ E+ +++ + D ++ P S + K+S A+ K+ EL R+R+ P
Sbjct: 649 EDIDEAEEEEDEQSEEDASESTPQASDEAPKISGQAALFNNDKEINPNELITLRKRNVRP 708
Query: 642 ATGNRS 647
N +
Sbjct: 709 NKKNNN 714
>UNIPROTKB|Q59MB4 [details] [associations]
symbol:RRP6 "Likely nuclear exosome component Rrp6p"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00474 CGD:CAL0000608 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 GO:GO:0035690 SUPFAM:SSF53098
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AACQ01000231
RefSeq:XP_710869.1 ProteinModelPortal:Q59MB4 SMR:Q59MB4
STRING:Q59MB4 GeneID:3647535 KEGG:cal:CaO19.58 Uniprot:Q59MB4
Length = 786
Score = 399 (145.5 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 105/301 (34%), Positives = 162/301 (53%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 273 MQISNREQDWIIDTLALRDDL-TVLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLF 331
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+I
Sbjct: 332 DTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFI 391
Query: 121 YDIMKIKLSSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ----- 174
YD +K KL K S+ D+ +V KR ++ + S +
Sbjct: 392 YDQLKNKLIDAEKLSQVLYDS--RQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNPKEPW 449
Query: 175 GAGLNAQQLA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-QLPTTAAKLR 228
G+ ++ + VV L +WRD++A+ DES Y++PN+ L+ +A + P K+
Sbjct: 450 GSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVL 509
Query: 229 RLLKSKHSYIERYMGPVLSIIKNSMQNA-AN-FEVIAQKLKEERMEVASEETEVLVLDTS 286
+ + + ++I+ +++ AN ++++ Q K++ SEE + +D +
Sbjct: 510 NVSYRISDAVRINAKELANLIEKTLKETEANDWDLVDQWNKQQ-----SEEQDDNSIDAA 564
Query: 287 S 287
S
Sbjct: 565 S 565
Score = 46 (21.3 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 585 KQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVS---AVDQAQKDDGTKELSQGRRRSAFP 641
+ I+ E+ +++ + D ++ P S + K+S A+ K+ EL R+R+ P
Sbjct: 649 EDIDEAEEEEDEQSEEDASESTPQASDEAPKISGQAALFNNDKEINPNELITLRKRNVRP 708
Query: 642 ATGNRS 647
N +
Sbjct: 709 NKKNNN 714
>TIGR_CMR|GSU_0443 [details] [associations]
symbol:GSU_0443 "ribonuclease D, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 Gene3D:1.10.150.80 SUPFAM:SSF47819
KO:K03684 RefSeq:NP_951502.1 ProteinModelPortal:Q74G09
GeneID:2686317 KEGG:gsu:GSU0443 PATRIC:22023634
HOGENOM:HOG000010987 OMA:LRETTFW ProtClustDB:CLSK924403
BioCyc:GSUL243231:GH27-436-MONOMER Uniprot:Q74G09
Length = 381
Score = 206 (77.6 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 79/268 (29%), Positives = 123/268 (45%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 70
+VD L + P L +F + +KV HGAD DI L RDFGI + N+FDT A ++L
Sbjct: 59 IVDPLAAP-DISP-LAPLFANAAIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQLLG 116
Query: 71 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 130
L L GV +K+YQ ADW RPL M+ YA +DT L+ +Y + +L
Sbjct: 117 EREFGLAAQLRKRFGVELDKQYQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELEE 176
Query: 131 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 190
+ + E+ R ++ E+ E +L G + ++ + LAV+ L
Sbjct: 177 KGRRGWVEEE--CELLSRV-----RVAERG--DEPFFLRFKG--ASRMDGRTLAVLEELL 225
Query: 191 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 250
+RD AR D VL T+ E+A++ P +L+ + RY +L ++
Sbjct: 226 LFRDGRARQFDVPPFKVLGTDTVRELAERRPRLPEELQGITGLTDKVAARYGEGILRAVE 285
Query: 251 NSMQNAANFEVIAQKLKEER-MEVASEE 277
A ++ A +E R ME E+
Sbjct: 286 RGCAVPAQ-QLPAYPREERRKMERGEED 312
>TIGR_CMR|APH_0137 [details] [associations]
symbol:APH_0137 "putative ribonuclease D" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 eggNOG:COG0349
KO:K03684 HOGENOM:HOG000063479 OMA:FHDCRQD ProtClustDB:CLSK749493
RefSeq:YP_504762.1 ProteinModelPortal:Q2GLI9 STRING:Q2GLI9
GeneID:3930937 KEGG:aph:APH_0137 PATRIC:20948846
BioCyc:APHA212042:GHPM-172-MONOMER Uniprot:Q2GLI9
Length = 381
Score = 177 (67.4 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 65/258 (25%), Positives = 120/258 (46%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+ + V+D L + + P L+E+F + KV H +D+ L F +F
Sbjct: 44 LQIAYENKQCVIDALAEGIDLTP-LQEIFDNTQIFKVFHDCRQDLDALSLLFESLPRPIF 102
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANK-EYQNADWRVRPLPDEMLRYAREDTHYL 117
DT A+ + + NS+ Y L+ F GV NK ++ DW RPL + +RYA +D YL
Sbjct: 103 DTQIAAMLCEYHENSVGYSKLVEQFLGVKLNKMPFKRVDWSKRPLTESEVRYALDDVIYL 162
Query: 118 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-A 176
+Y I++ L+S + S Y D C + + +S+N + ++ A
Sbjct: 163 YKLYGILRDILTSKGRLSW---------YMEEMD-C--IVDS--VSDNYTTILESMECYA 208
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK--LRRLLKSK 234
L Q+ + + EWR+ +AR + + ++ R ++ I K + LR+ ++
Sbjct: 209 DLTEQEANIARSVVEWRERVARLLNINRNIIMNARDVLNITKDFIADGSDSTLRKYVREL 268
Query: 235 HSYIERYMGPVLSIIKNS 252
Y++ + I++N+
Sbjct: 269 --YLQDLPFSLTEIVENN 284
>TIGR_CMR|SPO_2167 [details] [associations]
symbol:SPO_2167 "ribonuclease D" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003676 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_167394.1 ProteinModelPortal:Q5LRG1
GeneID:3193200 KEGG:sil:SPO2167 PATRIC:23377681
HOGENOM:HOG000277561 OMA:KSKYLHK ProtClustDB:CLSK864964
Uniprot:Q5LRG1
Length = 385
Score = 159 (61.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 65/226 (28%), Positives = 103/226 (45%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGA--DRDIVWLQRDFGIYLCNMFDTGQASRV 68
+VD L +++ P L +F+D + KV H A D +I W+ D G++ +FDT A+ V
Sbjct: 56 LVDPLAEGLELEP-LYTLFRDTSVVKVFHAARQDLEIFWV--DAGVFPEPLFDTQVAAMV 112
Query: 69 LKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 127
E+ E L+ C +K + DW RPL D YA D +L IY+ +
Sbjct: 113 CGFGEQVGYETLVRKICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAAD 172
Query: 128 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 187
L+ + ++ T +YD+ R E ++ I +G + LAVV
Sbjct: 173 LAKTGRSHWVAEELRTLTDPATYDI-RP--------EEAWRRIKTRTNSG---KFLAVVR 220
Query: 188 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL--RRLL 231
L ++R+ A+ ++ V + LIE+A P T A L RLL
Sbjct: 221 ELAQFRESYAQDNNVPRNRVFKDDALIELASTKPRTHADLGGSRLL 266
>TIGR_CMR|APH_1098 [details] [associations]
symbol:APH_1098 "3''-5'' exonuclease family protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
GO:GO:0003676 GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
RefSeq:YP_505646.1 ProteinModelPortal:Q2GJ05 STRING:Q2GJ05
GeneID:3930416 KEGG:aph:APH_1098 PATRIC:20950954
BioCyc:APHA212042:GHPM-1104-MONOMER Uniprot:Q2GJ05
Length = 204
Score = 145 (56.1 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 39/119 (32%), Positives = 60/119 (50%)
Query: 23 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN--SLEYLL 80
P LR+V DP K+ H A D+ ++ FG++ + T ASR+++ N L+ L
Sbjct: 60 PNLRKVISDPGVLKIFHFARFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDLC 119
Query: 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 139
+ GV NK Q++DW L E L YA D ++Y++ I K KL M + E +
Sbjct: 120 YELLGVKINKAQQSSDWGREVLTAEQLSYAAAD---VIYLHAIKK-KLDMMLEREEKQE 174
>UNIPROTKB|Q9KQL4 [details] [associations]
symbol:rnd "Ribonuclease D" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0004525 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 PIR:G82132 RefSeq:NP_231618.1
ProteinModelPortal:Q9KQL4 DNASU:2613488 GeneID:2613488
KEGG:vch:VC1984 PATRIC:20083002 OMA:LCAWRER ProtClustDB:CLSK874625
Uniprot:Q9KQL4
Length = 381
Score = 155 (59.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 59/240 (24%), Positives = 105/240 (43%)
Query: 20 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 78
++ P++ E+ +D + KV+H D+ Q FG M DT + L ++
Sbjct: 70 EMTPFV-ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128
Query: 79 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 138
L+ V +K DW RPL D+ L YA D YLL +Y+ KL ++
Sbjct: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYE----KLVEQVTQAGWW 184
Query: 139 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 198
D L E V ++ K E +YL I G L ++LA++ L WR A
Sbjct: 185 DAALQE---SELQVAKRT--KVSNPELAYLDIKGAWQ--LKPKELAILKPLATWRYHEAV 237
Query: 199 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
D + +V+ L+ I++ + ++ H+ I R+ +++++K +++ A+
Sbjct: 238 NRDLALNFVIKETDLLTISRLALRSPKRMEEEGVDPHA-IRRHSSKIIAMVKTALETPAD 296
>TIGR_CMR|VC_1984 [details] [associations]
symbol:VC_1984 "ribonuclease D" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0004525 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 PIR:G82132 RefSeq:NP_231618.1
ProteinModelPortal:Q9KQL4 DNASU:2613488 GeneID:2613488
KEGG:vch:VC1984 PATRIC:20083002 OMA:LCAWRER ProtClustDB:CLSK874625
Uniprot:Q9KQL4
Length = 381
Score = 155 (59.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 59/240 (24%), Positives = 105/240 (43%)
Query: 20 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 78
++ P++ E+ +D + KV+H D+ Q FG M DT + L ++
Sbjct: 70 EMTPFV-ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128
Query: 79 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 138
L+ V +K DW RPL D+ L YA D YLL +Y+ KL ++
Sbjct: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYE----KLVEQVTQAGWW 184
Query: 139 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 198
D L E V ++ K E +YL I G L ++LA++ L WR A
Sbjct: 185 DAALQE---SELQVAKRT--KVSNPELAYLDIKGAWQ--LKPKELAILKPLATWRYHEAV 237
Query: 199 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
D + +V+ L+ I++ + ++ H+ I R+ +++++K +++ A+
Sbjct: 238 NRDLALNFVIKETDLLTISRLALRSPKRMEEEGVDPHA-IRRHSSKIIAMVKTALETPAD 296
>TIGR_CMR|ECH_0300 [details] [associations]
symbol:ECH_0300 "putative ribonuclease D" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
RefSeq:YP_507121.1 ProteinModelPortal:Q2GHG2 STRING:Q2GHG2
GeneID:3928062 KEGG:ech:ECH_0300 PATRIC:20576105
HOGENOM:HOG000063479 OMA:FHDCRQD ProtClustDB:CLSK749493
BioCyc:ECHA205920:GJNR-300-MONOMER Uniprot:Q2GHG2
Length = 387
Score = 149 (57.5 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 61/261 (23%), Positives = 118/261 (45%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+ E FV+D L + + L +F + + KV H +DI L F +F
Sbjct: 44 IQIAYGKEQFVIDVLAKDMDLS-VLGHIFYNESIIKVFHDCRQDIDALLTKFPEIPSPIF 102
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANK-EYQNADWRVRPLPDEMLRYAREDTHYL 117
DT A+ N++ Y L+ F G++ +K + ++W +RPL + ++YA D YL
Sbjct: 103 DTQIAAMFCCCYDNAVGYSKLVEQFLGISLDKLSLKRSNWALRPLSADKIQYALNDVIYL 162
Query: 118 LYIYDIMKIKLSSMPKE----SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 173
+Y I+ L K E ++ L EV DVC I
Sbjct: 163 YELYQILYNNLLDAGKLPWFLEEMNNIVLQEV--NCNDVC---------------DIPDF 205
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL--PTTAAKLRRLL 231
G+ + +++ VV + EWR+ +A+ + + ++L N+ ++ + + + + L + +
Sbjct: 206 -GSDMTKEEIIVVRSVIEWRERLAKFFNLNREFILKNKVMLSLVRDFIKKSDISTLGKYI 264
Query: 232 KSKHSYIERYMGPVLSIIKNS 252
K ++ + + +L +I N+
Sbjct: 265 KKEYLSCDA-VSDLLQVIDNN 284
>TIGR_CMR|NSE_0529 [details] [associations]
symbol:NSE_0529 "3'-5' exonuclease family protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0349 KO:K03684
RefSeq:YP_506413.1 ProteinModelPortal:Q2GDN3 STRING:Q2GDN3
GeneID:3931905 KEGG:nse:NSE_0529 PATRIC:22681107
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
BioCyc:NSEN222891:GHFU-549-MONOMER Uniprot:Q2GDN3
Length = 206
Score = 130 (50.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 35/108 (32%), Positives = 53/108 (49%)
Query: 23 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL--ERNSLEYLL 80
P L+ + DP K+ H A DI L+ G+ N + T ASR+++ + +SL+ L
Sbjct: 62 PRLKSLLVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLKELC 121
Query: 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 128
GV NK Q++DW L E + YA D YL I + + + L
Sbjct: 122 LDLLGVRLNKGKQSSDWGSTSLTREQMSYAASDVLYLHAIKEALDVML 169
>UNIPROTKB|O07183 [details] [associations]
symbol:MT2755 "CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005886
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842580 GO:GO:0000166 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 KO:K03684
EMBL:AL123456 PIR:D70528 RefSeq:NP_217197.1 RefSeq:NP_337256.1
RefSeq:YP_006516125.1 SMR:O07183 EnsemblBacteria:EBMYCT00000002560
EnsemblBacteria:EBMYCT00000070259 GeneID:13319408 GeneID:887708
GeneID:925540 KEGG:mtc:MT2755 KEGG:mtu:Rv2681 KEGG:mtv:RVBD_2681
PATRIC:18127796 TubercuList:Rv2681 HOGENOM:HOG000243390 OMA:ADWSTRP
ProtClustDB:CLSK792001 Uniprot:O07183
Length = 438
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/186 (25%), Positives = 85/186 (45%)
Query: 33 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 92
T + ++H AD+D+ L + G+ ++DT A R+ +R +L ++ G+ K +
Sbjct: 107 TNEWILHSADQDLPCLA-EVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGH 165
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYD 151
ADW RPLP L YA D L+ + + +S + E +D E + RS++
Sbjct: 166 GAADWSKRPLPSAWLNYAALDVELLIEL----RAAISRVLAEQGKTDWAAQEFEHLRSFE 221
Query: 152 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 211
R ++ + G+ + + LA V L RD IA+ D + +LP+
Sbjct: 222 -SRP--PPAAARQDRWRRTSGIHKVH-DRRGLAAVRELWTARDRIAQRRDIAPRRILPDS 277
Query: 212 TLIEIA 217
+I+ A
Sbjct: 278 AIIDAA 283
>UNIPROTKB|P09155 [details] [associations]
symbol:rnd "RNase D" species:83333 "Escherichia coli K-12"
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0033890 "ribonuclease D activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA;IMP] [GO:0004540
"ribonuclease activity" evidence=IMP] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
GO:GO:0008033 SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0008408
SUPFAM:SSF47819 eggNOG:COG0349 EMBL:X70994 EMBL:X07055 PIR:S01223
RefSeq:NP_416318.1 RefSeq:YP_490065.1 PDB:1YT3 PDBsum:1YT3
ProteinModelPortal:P09155 SMR:P09155 DIP:DIP-10726N IntAct:P09155
MINT:MINT-1309170 PRIDE:P09155 DNASU:946328
EnsemblBacteria:EBESCT00000002543 EnsemblBacteria:EBESCT00000015703
GeneID:12931344 GeneID:946328 KEGG:ecj:Y75_p1779 KEGG:eco:b1804
PATRIC:32118925 EchoBASE:EB0851 EcoGene:EG10858
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG ProtClustDB:PRK10829
BioCyc:EcoCyc:EG10858-MONOMER BioCyc:ECOL316407:JW1793-MONOMER
BioCyc:MetaCyc:EG10858-MONOMER EvolutionaryTrace:P09155
Genevestigator:P09155 GO:GO:0033890 TIGRFAMs:TIGR01388
Uniprot:P09155
Length = 375
Score = 131 (51.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 52/210 (24%), Positives = 89/210 (42%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHF 83
L+ + +DP+ K +H D+ FG + DT + + ++ +
Sbjct: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 143
GV +K DW RPL + YA D YLL I K+ + E+E S
Sbjct: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMV-----ETEASGW--- 175
Query: 144 EVYKRSYDVCR--QLYEKELLS-ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
+ D CR Q+ +E+++ E+++ I L +QLA + L +WR AR
Sbjct: 176 --LPAALDECRLMQMRRQEVVAPEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARER 231
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
D + +V+ L +A+ +P + +L L
Sbjct: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSL 261
>TIGR_CMR|SO_2580 [details] [associations]
symbol:SO_2580 "ribonuclease D" species:211586 "Shewanella
oneidensis MR-1" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0042780
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:NP_718166.1 ProteinModelPortal:Q8EE10
GeneID:1170282 KEGG:son:SO_2580 PATRIC:23524787
ProtClustDB:CLSK906783 Uniprot:Q8EE10
Length = 367
Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
Identities = 55/205 (26%), Positives = 87/205 (42%)
Query: 31 DPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL-LHHFC-GVNA 88
+P K++H D+ +FD+ A+ + + + L Y L C G
Sbjct: 71 NPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMG-HGLGYAKLVETCLGEVI 129
Query: 89 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 148
+K DW RPL D L YA D YL +Y + KL + + L +Y+
Sbjct: 130 DKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQDR--------LDWLYEE 181
Query: 149 SYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++ E L S E +YL + L QLA + L +WR A A D + G
Sbjct: 182 G----ERMTEGRLASPDAETAYLKVKN--AFQLTEHQLAYLKVLAKWRLEKALARDLALG 235
Query: 206 YVLPNRTLIEIAKQLPTTAAKLRRL 230
+V+ + LI +AK+ P + + L +L
Sbjct: 236 FVIKDHGLIALAKKQPKSMSDLLKL 260
>TIGR_CMR|ECH_1011 [details] [associations]
symbol:ECH_1011 "3'-5' exonuclease family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
RefSeq:YP_507797.1 ProteinModelPortal:Q2GFI6 STRING:Q2GFI6
GeneID:3927400 KEGG:ech:ECH_1011 PATRIC:20577396
BioCyc:ECHA205920:GJNR-1014-MONOMER Uniprot:Q2GFI6
Length = 204
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 35/117 (29%), Positives = 55/117 (47%)
Query: 23 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL--ERNSLEYLL 80
P L V D + K+ H A DI ++ G++ + T AS++++ + + L+ L
Sbjct: 60 PNLVSVLSDSSITKIFHFARFDIAVIRYYLGVWATPCYCTKIASKLVRTYTDHHGLKELC 119
Query: 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 137
+ V NK Q++DW L E L YA D YL +K KL +M + EN
Sbjct: 120 YELLNVKLNKMQQSSDWGKETLTSEQLNYAASDVIYL----HALKNKLDAM-LQREN 171
>TIGR_CMR|SPO_0083 [details] [associations]
symbol:SPO_0083 "exonuclease, putative" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=ISS] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISS] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 KO:K03684 HOGENOM:HOG000003834
OMA:CTKIASR ProtClustDB:CLSK863722 RefSeq:YP_165357.1
ProteinModelPortal:Q5LWM8 GeneID:3193828 KEGG:sil:SPO0083
PATRIC:23373403 Uniprot:Q5LWM8
Length = 204
Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 23 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL--ERNSLEYLL 80
P L + ++P K+ H DI L FG ++ T ASR+++ +R+ L+ L
Sbjct: 61 PNLCAMLENPEVLKLFHFGRFDIAALYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLC 120
Query: 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 117
GV+ +K+ Q +DW L + L YA D YL
Sbjct: 121 QELLGVDISKQQQMSDWGAETLSEAQLDYAASDVLYL 157
>TIGR_CMR|CPS_3518 [details] [associations]
symbol:CPS_3518 "ribonuclease D" species:167879 "Colwellia
psychrerythraea 34H" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 eggNOG:COG0349
GO:GO:0042780 HOGENOM:HOG000277560 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_270192.1 ProteinModelPortal:Q47YC8
STRING:Q47YC8 GeneID:3519149 KEGG:cps:CPS_3518 PATRIC:21469973
OMA:SRTGTEI BioCyc:CPSY167879:GI48-3546-MONOMER Uniprot:Q47YC8
Length = 379
Score = 117 (46.2 bits), Expect = 0.00093, P = 0.00093
Identities = 56/240 (23%), Positives = 103/240 (42%)
Query: 36 KVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEY 92
KV+H D+ V+L N+ D+ Q SL Y ++ HF + +K
Sbjct: 77 KVLHACSEDLEVFLTAG-NCKPVNLIDS-QIMMSFLGHGLSLGYAAMVKHFTDIELDKSE 134
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 152
DW RPL ++ L YA D +L IY KL + + ++ ++ +S +
Sbjct: 135 SRTDWTKRPLTEKQLDYASADVDHLFDIYP----KL--LAEITQAGFLAYAQIETQSM-I 187
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
++ ++ YL+I LN +QL ++ L WR A+ D G+V + T
Sbjct: 188 DKKF--TPIIESEMYLNIK--MNWRLNPKQLNLLKYLASWRFQQAKKRDLPLGFVAKDHT 243
Query: 213 LIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 272
L+ +A+ P + + L + + R+ G + + + + A EV + K +R++
Sbjct: 244 LMALAQSNPESVNAMLTL-EGVETLDIRHKGKAMLAVLSQAEQA---EVSSYPDKIDRLD 299
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 651 635 0.00092 120 3 11 23 0.47 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 619 (66 KB)
Total size of DFA: 313 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 70.20u 0.12s 70.32t Elapsed: 00:00:04
Total cpu time: 70.21u 0.12s 70.33t Elapsed: 00:00:04
Start: Tue May 21 13:11:32 2013 End: Tue May 21 13:11:36 2013