BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006313
(651 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359481017|ref|XP_002269553.2| PREDICTED: exosome component 10-like [Vitis vinifera]
Length = 931
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/673 (54%), Positives = 461/673 (68%), Gaps = 50/673 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDFVVDTLKLR+ VGPYLREVFKDPTKKKVMHGADRDI+WLQRDFGIY+CNMF
Sbjct: 287 MQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMF 346
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLERNSLE+LLHH+CGV ANKEYQN DWR+RPLP EMLRYAREDTHYLL+I
Sbjct: 347 DTGQASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYLLHI 406
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+ +L SM E ENS+ L EVYKRS+D+C QLYEKELL+++SYL+ YGLQGA NA
Sbjct: 407 YDLMRTQLLSMA-ELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNA 465
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQLA+VAGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T +KLRRLLKSKH Y+ER
Sbjct: 466 QQLAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVER 525
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPN 293
+GPV+SII++S+ NAA FE AQ LKE + ASE+ E L ++ ++++ +
Sbjct: 526 NLGPVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIRAAD 585
Query: 294 VGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH-PGEAIASEN 352
ES D + + G + K+ + GS++ G G + PGE+ ++
Sbjct: 586 ARAESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKEVKD 645
Query: 353 KEATHI-----STLSSSGQSRDLN--ACKSPSPRVTEAAVQALKKPNRGFGALLGN--PK 403
++ + I T +SSGQSRD + S S +VTE VQ LKKPNR FG+LLGN K
Sbjct: 646 EKDSFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNSASK 705
Query: 404 RKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSG 463
RK + + K KE +KLEQIKSSVNLPFHS S N+ +L
Sbjct: 706 RKLNSDPKGKEDIKLEQIKSSVNLPFHSF--------------SGGNREEL--------- 742
Query: 464 EQTKPIIEESNRVTVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP-- 519
+K EE +V SEEP PA+R D E+II E++ +E GN A+
Sbjct: 743 --SKLDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLE 800
Query: 520 -GEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPF 578
ED GS LEM + +E MSL+DLS+ FQ+C S N RK + E+S+E +G LQ+KPF
Sbjct: 801 GKEDNPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPF 860
Query: 579 DFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRS 638
D+EAARKQ+ FGED E+S G +G + V+S KK+ + Q +D T + +QGRRR
Sbjct: 861 DYEAARKQVRFGEDP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQ 918
Query: 639 AFPATGNRSATFR 651
AFPATGNRS TFR
Sbjct: 919 AFPATGNRSVTFR 931
>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]
Length = 901
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/673 (54%), Positives = 461/673 (68%), Gaps = 50/673 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDFVVDTLKLR+ VGPYLREVFKDPTKKKVMHGADRDI+WLQRDFGIY+CNMF
Sbjct: 257 MQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMF 316
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLERNSLE+LLHH+CGV ANKEYQN DWR+RPLP EMLRYAREDTHYLL+I
Sbjct: 317 DTGQASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYLLHI 376
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+ +L SM E ENS+ L EVYKRS+D+C QLYEKELL+++SYL+ YGLQGA NA
Sbjct: 377 YDLMRTQLLSM-AELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNA 435
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQLA+VAGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T +KLRRLLKSKH Y+ER
Sbjct: 436 QQLAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVER 495
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPN 293
+GPV+SII++S+ NAA FE AQ LKE + ASE+ E L ++ ++++ +
Sbjct: 496 NLGPVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIRAAD 555
Query: 294 VGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH-PGEAIASEN 352
ES D + + G + K+ + GS++ G G + PGE+ ++
Sbjct: 556 ARAESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKEVKD 615
Query: 353 KEATHI-----STLSSSGQSRDLN--ACKSPSPRVTEAAVQALKKPNRGFGALLGN--PK 403
++ + I T +SSGQSRD + S S +VTE VQ LKKPNR FG+LLGN K
Sbjct: 616 EKDSFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNSASK 675
Query: 404 RKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSG 463
RK + + K KE +KLEQIKSSVNLPFHS S N+ +L
Sbjct: 676 RKLNSDPKGKEDIKLEQIKSSVNLPFHSF--------------SGGNREEL--------- 712
Query: 464 EQTKPIIEESNRVTVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP-- 519
+K EE +V SEEP PA+R D E+II E++ +E GN A+
Sbjct: 713 --SKLDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLE 770
Query: 520 -GEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPF 578
ED GS LEM + +E MSL+DLS+ FQ+C S N RK + E+S+E +G LQ+KPF
Sbjct: 771 GKEDNPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPF 830
Query: 579 DFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRS 638
D+EAARKQ+ FGED E+S G +G + V+S KK+ + Q +D T + +QGRRR
Sbjct: 831 DYEAARKQVRFGEDP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQ 888
Query: 639 AFPATGNRSATFR 651
AFPATGNRS TFR
Sbjct: 889 AFPATGNRSVTFR 901
>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa]
gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]
Length = 858
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/662 (54%), Positives = 431/662 (65%), Gaps = 88/662 (13%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR+ VGPYLREVFKDP K+KVMHGADRD+VWLQRDFGIY+CN+F
Sbjct: 274 MQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDVVWLQRDFGIYICNLF 333
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLERNSLE+LLHHFCGV ANKEYQNADWR+RPLPDEM+RYAREDTHYLL+I
Sbjct: 334 DTGQASRVLKLERNSLEHLLHHFCGVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLHI 393
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+ L S P ++EN+D PL EVYKRSYDVC QLYEKEL +ENSYL++YGL AG NA
Sbjct: 394 YDLMRALLLSKPIDNENADPPLLEVYKRSYDVCMQLYEKELFTENSYLNMYGLPSAGFNA 453
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQLA+VAGL EWRD IARA+DESTGY+LPN+TL+EIAK++P T +KLR+LLKSKHSYIER
Sbjct: 454 QQLAIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTISKLRQLLKSKHSYIER 513
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD 300
++ V+SII++SMQ +A FE Q LKE ME+AS+E E D S IP G
Sbjct: 514 HLSSVVSIIRHSMQTSAAFEAAVQHLKERHMEIASQE-ETEANDGSEARSIPG-GNGMNS 571
Query: 301 GVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIST 360
GV A T+ QL++ K GSS+ EL R G GS A H
Sbjct: 572 GVAACHETS-------AQLEKGLLKQGSSIVELGRGGQGS-------------SAKH--- 608
Query: 361 LSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFDGEKKDKEAMKL 418
A VQ LKKP FGALLG KRK D +KK KE +KL
Sbjct: 609 ---------------------HATVQVLKKPTGAFGALLGGAVAKRKLDTDKKVKEKIKL 647
Query: 419 EQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTV 478
E+I+SSVNLPFHS G E K ++EE V+
Sbjct: 648 EKIRSSVNLPFHSF---------------------------MGINEPPKVVVEEPIGVSE 680
Query: 479 VSQSEEP--APAARPDTEDIITLEDDIDEE------EQNLGNLETASAPGEDGSAGSALE 530
+S EE PA +DII L++D D E E + + +T +A G+D S+GSALE
Sbjct: 681 ISHPEESLDVPATGSSLQDIILLDNDSDMEQNTHIAEPDRDDSKTTNANGDDKSSGSALE 740
Query: 531 MGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFG 590
+ E +SL+DLS SFQ+CF S N N+K + +S EPSG L+LKPFD+ A + G
Sbjct: 741 TDGE-EPVSLADLSMSFQKCFPSGNQNKKTAEVMKSGEPSGGLKLKPFDYTTALRS---G 796
Query: 591 ED-AKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSAT 649
ED A G N+R ++S K S + QKDD T E QGRRR AFPATGNRSAT
Sbjct: 797 EDPAGRLKVGSAKNQRGVLDSVGTIKSSPGAKMQKDDETGEYRQGRRRQAFPATGNRSAT 856
Query: 650 FR 651
FR
Sbjct: 857 FR 858
>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 857
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/671 (51%), Positives = 429/671 (63%), Gaps = 103/671 (15%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTLKLR+ VGPYLREVFKDPTK+KVMHGADRDI+WLQRDFGIY+CN+F
Sbjct: 270 MQISTRTEDFIIDTLKLRIHVGPYLREVFKDPTKRKVMHGADRDIIWLQRDFGIYVCNLF 329
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLERNSLE+LL HFCG+ ANKEYQNADWR+RPL DEMLRY REDTHYLLYI
Sbjct: 330 DTGQASRVLKLERNSLEHLLRHFCGITANKEYQNADWRLRPLTDEMLRYGREDTHYLLYI 389
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+I L SMP E+ENS++PL EVYKRSYDVC QLYEKELL+E+SYLHIYGLQ AG NA
Sbjct: 390 YDLMRIMLLSMPNETENSNSPLAEVYKRSYDVCMQLYEKELLTESSYLHIYGLQTAGFNA 449
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQLA+VAGLCEWRDVIAR +DESTG++LPN+TL+EIAKQ+P T KLRR LKSKH YIER
Sbjct: 450 QQLAIVAGLCEWRDVIARTEDESTGFILPNKTLLEIAKQMPVTPQKLRRALKSKHPYIER 509
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERME-----------VASEETEVLV---LDTS 286
+G V+++++++MQNAA FE AQ+LKE +E + + + V V +D
Sbjct: 510 NLGSVVNVVRHAMQNAAEFEAAAQRLKEGCIETDNLSSIFAFFMKASQDNVEVNDDMDMD 569
Query: 287 SNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGE 346
+NL+ G E++ A+ G+ QLK+EP K ++
Sbjct: 570 TNLETAEAGTETICDGSAVEGSENALQTDSPQLKKEPLKAALAI---------------- 613
Query: 347 AIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP---K 403
+A VQ LKKP FGALLG K
Sbjct: 614 -----------------------------------DATVQVLKKPAGAFGALLGKSSAGK 638
Query: 404 RKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSG 463
R+FD KKDK+ +KL++I+SSV+LPFHS R
Sbjct: 639 RRFDMAKKDKDEIKLDKIRSSVSLPFHSFLGRK--------------------------- 671
Query: 464 EQTKPIIEESNRVTVVSQSEE--PAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGE 521
E KP EE N VT + EE PA EDII L D+ D Q + +T
Sbjct: 672 EPAKPAAEEPNLVTETPRPEESFAVPATGSSLEDIILLGDNSDVVVQENVDSDTKDV--- 728
Query: 522 DGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKP-ERSEEPSGFLQLKPFDF 580
S G E ++ E SLSDLSTSFQ+CF S N N+ ++S++P+G LQLKPFD+
Sbjct: 729 SKSVGCESETDEEGEPASLSDLSTSFQKCFQSNNENKTNENNMQKSQDPTGLLQLKPFDY 788
Query: 581 EAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAF 640
AARK++ FGE++K S G D ++ V D++K S +KDDGT++ QG+RR AF
Sbjct: 789 AAARKEVIFGEESKAASGGKDQSRNDGVK--DRRKNSVGGGVEKDDGTRDFPQGKRRQAF 846
Query: 641 PATGNRSATFR 651
PATGNRSATFR
Sbjct: 847 PATGNRSATFR 857
>gi|449462768|ref|XP_004149112.1| PREDICTED: exosome component 10-like [Cucumis sativus]
Length = 936
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/682 (53%), Positives = 444/682 (65%), Gaps = 67/682 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED+VVDTLKLR+ VGPYLREVFKDP+KKKV+HGADRD+VWLQRDFGIY+CN+F
Sbjct: 291 MQISTRTEDYVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDVVWLQRDFGIYICNLF 350
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLERNSLEYLLHHFCGV ANKEYQNADWR+RPLP+EM+RYAREDTHYLLYI
Sbjct: 351 DTGQASRVLKLERNSLEYLLHHFCGVAANKEYQNADWRLRPLPEEMVRYAREDTHYLLYI 410
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M++KL+SMP+ESE SD PL EVYKRS+DVC LYEKELL+E+SYL++YGLQG+G +A
Sbjct: 411 YDLMRMKLASMPRESEESDLPLVEVYKRSHDVCMHLYEKELLTESSYLYVYGLQGSGFDA 470
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQLAV AGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T KLRRLLKSKH YIER
Sbjct: 471 QQLAVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTVNKLRRLLKSKHPYIER 530
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPN 293
+ +++II++SM N+ FE AQ+LKE R E ASEE E + DT N+K
Sbjct: 531 NLASIVTIIRHSMLNSCAFEEAAQRLKEVRAEAASEENASANEHQETNIPDTILNMKNSA 590
Query: 294 VGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASEN- 352
V D V + P S VA L+R G F PG+ + ++
Sbjct: 591 VDNTPSDRVCS-------------------PSSQSKVAPLER-GYRPFV-PGKCVKVDHS 629
Query: 353 -----KEATHISTL--SSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PK 403
+ HIS + ++S S+ N K P VT + KK NRG G+LLGN PK
Sbjct: 630 LHPVLNGSRHISPVGPTTSEPSKHSNGDKYPVAHVTGVNISLQKKTNRGLGSLLGNSAPK 689
Query: 404 RKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLK----PVDVMKSEPNKPDLPFPSS 459
RK D +KKDKE KL++I+SSV LPFHS EQLK P V + +LP S
Sbjct: 690 RKLDIDKKDKEESKLDKIRSSVTLPFHSFLGTSEQLKSVAEPTTVTALKTQNSELPAAES 749
Query: 460 FGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNL------ 513
S P + P P P T++II LEDD D+ ++
Sbjct: 750 AKSSNVEPPAV--------------PVPKPFP-TDEIIMLEDDSDDNVEDEDEDEDEELR 794
Query: 514 ---ETASAPGEDG-SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEP 569
E P G SA S LE+ DE MSLS+LS+SFQ+C +S G+ +
Sbjct: 795 AVDEATGEPKLKGLSASSPLEIDDDDEPMSLSELSSSFQKCLNSNEKAMNVGETDNPGNQ 854
Query: 570 SGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTK 629
S FLQ+KPFD+EAARK++ FGED +E + K + K +D+ QK+ GT
Sbjct: 855 SDFLQIKPFDYEAARKEVVFGEDLEEDLEPENDKDPKASKNAGAKLDLGLDRVQKNSGTV 914
Query: 630 ELSQGRRRSAFPATGNRSATFR 651
EL QG+RR AFPATGNRSATFR
Sbjct: 915 ELPQGKRRHAFPATGNRSATFR 936
>gi|356565747|ref|XP_003551099.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 889
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 349/657 (53%), Positives = 441/657 (67%), Gaps = 70/657 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR+ +GPYLRE+FKDP K+KVMHGADRDI WLQRDFGIY+CN+F
Sbjct: 297 MQISTRTEDFIVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIAWLQRDFGIYICNLF 356
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QAS++L LERNSLE++LHHFC V ANKEYQNADWR+RPLPDEM+RYAREDTHYLLYI
Sbjct: 357 DTHQASKLLNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLYI 416
Query: 121 YDIMKIKLSSM---PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 177
YD+M+IKL ++ + SE+SDTPL EVYKRSYDVC QLYEKELL+ENSYLHIYGLQGAG
Sbjct: 417 YDLMRIKLFALSKESESSESSDTPLVEVYKRSYDVCIQLYEKELLTENSYLHIYGLQGAG 476
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 237
NAQQLA+V+GLCEWRD++ARA+DESTGYVLPN++++EIAKQ+P T +KLRRL+KSKH Y
Sbjct: 477 FNAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRRLVKSKHPY 536
Query: 238 IERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRE 297
+E + V+SII++S+QNAA+FE AQ+LKE + AS+ V T P+ R
Sbjct: 537 VEHNLDTVVSIIRHSIQNAASFEEAAQQLKEAQAVTASDVVPV----TDGTEDPPSHTRH 592
Query: 298 SVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATH 357
S + T++P L EPPK ++AE
Sbjct: 593 SKESSQHQ-ATSVPIKIKSNSLIFEPPKDSLTIAE------------------------- 626
Query: 358 ISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFDGEKKDKEA 415
Q+RD N + + AAVQ LKKP FGALLG+ KRK G K KE
Sbjct: 627 --------QNRDANVGALSTAKGNGAAVQVLKKPTGAFGALLGSSASKRKL-GPGKGKEE 677
Query: 416 MKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNR 475
+KLEQI+SSV+LPFHS E KSEP + ++P +S S E KP+ +
Sbjct: 678 IKLEQIRSSVSLPFHSFLGSSE--------KSEPTE-EIPSVASEMS-EPQKPVSD---- 723
Query: 476 VTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQD 535
VVS S ++II LE D ++ NLE ++ E S S +D
Sbjct: 724 --VVSASP---------VDEIIMLESDTGAKDMEQNNLENSNEHREKDSVVSTSGKEDED 772
Query: 536 ETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKE 595
E +SLS+LS++ ++CFHS + N K +P+++E+PSG +QLKPFD+EAARK ++FGE K
Sbjct: 773 EPVSLSELSSNLKKCFHSNDQNNKIRQPKKTEQPSGLVQLKPFDYEAARKHVKFGEHKKH 832
Query: 596 KSA-GVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 651
S+ G DG+ +SG KK+ S Q Q D +K+L QGRRR AFPA+GNRS+TFR
Sbjct: 833 ASSKGSDGHMEVVEDSGSKKQRSTTGQGQASDLSKQLPQGRRRQAFPASGNRSSTFR 889
>gi|449522510|ref|XP_004168269.1| PREDICTED: exosome component 10-like [Cucumis sativus]
Length = 935
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 360/682 (52%), Positives = 444/682 (65%), Gaps = 68/682 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED+VVDTLKLR+ VGPYLREVFKDP+KKKV+HGADRD+VWLQRDFGIY+CN+F
Sbjct: 291 MQISTRTEDYVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDVVWLQRDFGIYICNLF 350
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLERNSLEYLLHHFCGV ANKEYQNADWR+RPLP+EM+RYAREDTHYLLYI
Sbjct: 351 DTGQASRVLKLERNSLEYLLHHFCGVAANKEYQNADWRLRPLPEEMVRYAREDTHYLLYI 410
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M++KL+SMP+ESE SD PL EVYKRS+DVC LYEKELL+E+SYL++YGLQG+G +A
Sbjct: 411 YDLMRMKLASMPRESEESDLPLVEVYKRSHDVCMHLYEKELLTESSYLYVYGLQGSGFDA 470
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQLAV AGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T KLRRLLKSKH YIER
Sbjct: 471 QQLAVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTVNKLRRLLKSKHPYIER 530
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPN 293
+ +++II++SM N+ FE AQ+LKE R E ASEE E + DT N+K
Sbjct: 531 NLASIVTIIRHSMLNSCAFEEAAQRLKEVRAEAASEENASANEHQETNIPDTILNMKNSA 590
Query: 294 VGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASEN- 352
V D V + P S VA L+R G F PG+ + ++
Sbjct: 591 VDNTPSDRVCS-------------------PSSQSKVAPLER-GYRPFV-PGKCVKVDHS 629
Query: 353 -----KEATHISTL--SSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PK 403
+ HIS + ++S S+ N K P VT + KK NRG G+LLGN PK
Sbjct: 630 LHPVLNGSRHISPVGPTTSEPSKHSNGDKYPVAHVTGVNISLQKKTNRGLGSLLGNSAPK 689
Query: 404 RKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLK----PVDVMKSEPNKPDLPFPSS 459
RK D +KKDKE KL++I+SSV LPFHS EQLK P V + +LP S
Sbjct: 690 RKLDIDKKDKEESKLDKIRSSVTLPFHSFLGTSEQLKSVAEPTTVTALKTQNSELPAAES 749
Query: 460 FGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNL------ 513
S P + P P P T++II LEDD D+ ++
Sbjct: 750 AKSSNVEPPAV--------------PVPKPFP-TDEIIMLEDDSDDNVEDEDEDEDEELR 794
Query: 514 ---ETASAPGEDG-SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEP 569
E P G SA S LE+ DE MSLS+LS+SFQ+C +S G+ +
Sbjct: 795 AVDEATGEPKLKGLSASSPLEIDDDDEPMSLSELSSSFQKCLNSNEKAMNVGETDNPGNQ 854
Query: 570 SGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTK 629
S FLQ+KPFD+EAARK + + ++ D + + N+G K + +D+ QK+ GT
Sbjct: 855 SDFLQIKPFDYEAARKVVFGEDLEEDLEPENDKDPKASKNAGAKLDL-GLDRVQKNSGTV 913
Query: 630 ELSQGRRRSAFPATGNRSATFR 651
EL QG+RR AFPATGNRSATFR
Sbjct: 914 ELPQGKRRHAFPATGNRSATFR 935
>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa]
gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]
Length = 855
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 352/662 (53%), Positives = 424/662 (64%), Gaps = 90/662 (13%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR+ VGPYLREVFKDP K+KVMHGADRDIVWLQRDFGIY+CN+F
Sbjct: 273 MQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIVWLQRDFGIYICNLF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLERNSLEYLLHHFCGV A KEYQNA+WR+RPLPDEM+RYAREDTHYLL+I
Sbjct: 333 DTGQASRVLKLERNSLEYLLHHFCGVTAKKEYQNAEWRLRPLPDEMIRYAREDTHYLLHI 392
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+ L + +++N D PL EVYKRSYDVC QLYEKEL +ENSYL++YGL AG NA
Sbjct: 393 YDLMRALLLTKHSDNDNGDPPLVEVYKRSYDVCMQLYEKELFTENSYLNMYGLPNAGFNA 452
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQLA+VAGL EWRD IARA+DESTGY+LPN+TL+EIAK++P T +KLRRLLKSKHSYIER
Sbjct: 453 QQLAIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTPSKLRRLLKSKHSYIER 512
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD 300
++ V+SII++SMQ +A FE Q LKE ME AS++ DT N +SV
Sbjct: 513 HLSSVVSIIRHSMQTSAAFEAAVQHLKERLMETASQK------DTEVN---DGCEEKSVH 563
Query: 301 GVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIST 360
G + + G+ QLK+ K GSS+ EL + G S A H
Sbjct: 564 GGNGMNGSVAAE--TSMQLKRGLLKQGSSIVELGKGGHES-------------SAKH--- 605
Query: 361 LSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALL--GNPKRKFDGEKKDKEAMKL 418
A VQ LKKP FGALL KRK +KK E +KL
Sbjct: 606 ---------------------HATVQILKKPTGAFGALLRGAAAKRKLGTDKKVGEEVKL 644
Query: 419 EQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTV 478
E+I+SSVNLPFHS R+E KPV +PI+ E
Sbjct: 645 EKIRSSVNLPFHSFMPRNEPPKPV----------------------VEEPIVSE------ 676
Query: 479 VSQSEE--PAPAARPDTEDIITLEDDID-EEEQNLGNLET-----ASAPGEDGSAGSALE 530
+S EE PA +DII L+DD D E++ +G E + +D S+G+ALE
Sbjct: 677 ISHPEESLAVPATGSSLQDIIMLDDDSDMEQDTRIGEPERDDSKPTNVNRDDISSGTALE 736
Query: 531 MGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFG 590
K +E +SLSDLSTS Q+ F S+N NR+ + ++S E S L+LKPFD+ AA + FG
Sbjct: 737 TDKVEEPVSLSDLSTSSQKRFQSSNQNRRTAEGKKSGESSSVLKLKPFDYTAA---LRFG 793
Query: 591 EDAKEK-SAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSAT 649
E EK G D N+R S K K S QKDD T E +GRRR AFPA+GNRSAT
Sbjct: 794 EGPTEKLKVGNDKNQRDVRVSVGKIKSSPGAPVQKDDETGEFREGRRRQAFPASGNRSAT 853
Query: 650 FR 651
FR
Sbjct: 854 FR 855
>gi|356514039|ref|XP_003525715.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 877
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 329/658 (50%), Positives = 424/658 (64%), Gaps = 80/658 (12%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDFVVDTLKLR+ +GPYLRE+FKDP K+KVMHGADRDIVWLQRDFGIY+CN+F
Sbjct: 293 MQISTRTEDFVVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIVWLQRDFGIYICNLF 352
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QAS++L LERNSLE++LHHFC V ANKEYQNADWR+RPLP+EMLRYAREDTHYLLYI
Sbjct: 353 DTHQASKLLNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPNEMLRYAREDTHYLLYI 412
Query: 121 YDIMKIKLSSM---PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 177
YD+M+I+L ++ + SE+SDTP EVYKRSYDVC QLYEKE L+ENSYLHIYGLQGAG
Sbjct: 413 YDLMRIRLFALSKESESSESSDTPPVEVYKRSYDVCMQLYEKEFLTENSYLHIYGLQGAG 472
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 237
NAQQLA+V+GLCEWRD++ARA+DESTGYVLPN++++EIAKQ+P T +KLRRL+KSKH Y
Sbjct: 473 FNAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRRLVKSKHPY 532
Query: 238 IERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRE 297
+E + V+SII++S+QN+A FE AQ+LKE + AS+ V+ + + P +
Sbjct: 533 VEHNLDTVVSIIRHSIQNSAAFEEAAQQLKEAQAGTASD-----VVPFTDGTEDPQSHTQ 587
Query: 298 SVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATH 357
T +P L+ EPPK ++A+
Sbjct: 588 DSKESSNHQDTNVPINLKSNSLRSEPPKDSLTIAD------------------------- 622
Query: 358 ISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFDGEKKDKEA 415
Q+RD N + + A VQ LKKP FGALLGN KRK G K KE
Sbjct: 623 --------QNRDANVGALSTTKGNGATVQVLKKPTGAFGALLGNSASKRKL-GPDKGKED 673
Query: 416 MKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNR 475
KLEQI+SSV+LPFHS GS E+++P +E
Sbjct: 674 SKLEQIRSSVSLPFHSF---------------------------LGSSEKSEPTVETHTV 706
Query: 476 VTVVSQSEEPAP--AARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGK 533
+ + +S+ P + ++II LE E NLE++S E S S
Sbjct: 707 ASEMLESQRPVSDVVSVSPLDEIIMLESGTGAENMEQNNLESSSEHREKDSVVSISGKED 766
Query: 534 QDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDA 593
+DE++SL +LS++F++CFHS + N K P+++E+PSG + +KPFD+EAARK ++FGE
Sbjct: 767 EDESVSLLELSSNFKKCFHSNDQNYKTRWPKKTEQPSGLVPMKPFDYEAARKHVKFGEHT 826
Query: 594 KEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 651
K S+ + + +SG KK+ S + Q Q L QGRRR AFPA+GNRS+TFR
Sbjct: 827 KHASSKGSDSHMEVEDSGSKKQRSTIGQGQ-------LPQGRRRQAFPASGNRSSTFR 877
>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
lyrata]
gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
lyrata]
Length = 867
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 314/663 (47%), Positives = 404/663 (60%), Gaps = 105/663 (15%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED++VDT KLR+ +GPYLRE+FKDP KKK+MHGADRDI+WLQRDFGIY+CN+F
Sbjct: 297 MQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKIMHGADRDIIWLQRDFGIYVCNLF 356
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL L RNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYAREDTHYLLYI
Sbjct: 357 DTGQASRVLNLGRNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYI 416
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L M K+ E++D+PL +VYKRSYDVC QLYEKELL+ENSYLH+YGLQ AG NA
Sbjct: 417 YDVMRLELERMAKDDEHTDSPLLQVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNA 476
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QLA+VAGLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LKSKH YIER
Sbjct: 477 AQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPVSVGKLRRMLKSKHPYIER 536
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD 300
+ V+S+I+ SMQN+A FE A LK
Sbjct: 537 NVDSVVSVIRQSMQNSAAFESAALSLK--------------------------------- 563
Query: 301 GVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIST 360
D GT M + K++ V + L N + E+ N +A + +
Sbjct: 564 --DVSPGTVMDKNIEHISEKKDMHAVDVASPSLKEN-----SSQLESTRDLNMDAANTNE 616
Query: 361 LSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP--KRKFDGEKKDKEAMKL 418
S G +A S + R++ KKP+ G GALLG+ K+K ++K KE +KL
Sbjct: 617 GSGLGTGLFGSAKVSAAVRIS-------KKPSSGLGALLGSAASKKKSRTDEKVKEDVKL 669
Query: 419 EQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTV 478
EQI+SSVNL FHS + P S + E T + + +
Sbjct: 670 EQIRSSVNLSFHSFTEK--------------------VPDSKSTTETTPKVYGKPEEMFT 709
Query: 479 VSQSEEPAPAARPDTEDIIT-LEDDIDEEEQNLGNLETASAPGEDGSA---------GSA 528
Q A ED +T L+DD +E + +G S GS G
Sbjct: 710 TMQ-------ASVSKEDGVTELKDDSEEASEIVGTSGRVSESKVFGSKTGDIILLENGDE 762
Query: 529 LEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIE 588
E+ +DE MSLS+LST+FQ+CF S K ++++ + FL ++PFD+EAARK+++
Sbjct: 763 KEVEAEDEPMSLSELSTNFQKCFKSMK------KSNKAQKQTEFLNIEPFDYEAARKEVK 816
Query: 589 FGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSA 648
FGE K + +K V +G KKK S +Q+ E QG+RR AFPA+GNRSA
Sbjct: 817 FGEGHKGRQG------KKEVAAGQKKKGSGPEQS-------EFGQGKRRQAFPASGNRSA 863
Query: 649 TFR 651
TF+
Sbjct: 864 TFK 866
>gi|334188034|ref|NP_198440.2| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana]
gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
Length = 870
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/668 (46%), Positives = 403/668 (60%), Gaps = 116/668 (17%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED++VDT KLR+ +GPYLRE+FKDP KKKVMHGADRDI+WLQRDFGIY+CN+F
Sbjct: 301 MQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLF 360
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL LERNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYAREDTHYLLYI
Sbjct: 361 DTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYI 420
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD++K++L M K+ ++D+PL EVYKRSYDVC QLYEKELL+ENSYLH+YGLQ AG NA
Sbjct: 421 YDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNA 480
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QLA+VAGLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LKSKH YIER
Sbjct: 481 AQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIER 540
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLK--------EERMEVASEETEVLVLDTSSNLKIP 292
+ V+S+I+ SMQ+ A FE A LK ++ +E SE+ ++ D +S P
Sbjct: 541 NVDSVVSVIRQSMQHYAAFESAALSLKDVSPGNVMDKNIEPISEKKDLHTGDVAS----P 596
Query: 293 NVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASEN 352
++ S +QL+ + + + GLGS
Sbjct: 597 SLKENS------------------SQLESTRDLIMGAANTNEGRGLGS------------ 626
Query: 353 KEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP--KRKFDGEK 410
S+ S + K PS G GALLGN K+K ++
Sbjct: 627 ------GLFGSAKVSAAVRISKKPSS---------------GLGALLGNAASKKKSRTDE 665
Query: 411 KDKEAMKLEQIKSSVNLPFHSIFAR------DEQLKPVDVMKSEPNKPDLPFPSSFGSG- 463
K KE +KLEQI+SSVNL FHS + + P K E +P S G
Sbjct: 666 KVKEDVKLEQIRSSVNLSFHSFTEKVPDSKSTSETSPKVYGKPEEMSSTMPASVSKEDGV 725
Query: 464 EQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDG 523
++ K EE++ + S + + + DII LE+
Sbjct: 726 KELKDDSEEASEIVGTSGRVSESKVSSSEMGDIILLEN---------------------- 763
Query: 524 SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAA 583
G ++ +DE MSLS+LST+FQ+CF S N ++K +++ + FL ++PFD+EAA
Sbjct: 764 --GDEKKVDAEDEPMSLSELSTNFQKCFKSMNKSKK------AQKQTEFLNIEPFDYEAA 815
Query: 584 RKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPAT 643
RK+++FGE G G + K + +KK S +Q+ E QG+RR AFPA+
Sbjct: 816 RKEVKFGE-------GHKGRQGKREAAAGQKKGSTQEQS-------EFGQGKRRQAFPAS 861
Query: 644 GNRSATFR 651
GNRS +F+
Sbjct: 862 GNRSMSFK 869
>gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana]
Length = 834
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/669 (46%), Positives = 403/669 (60%), Gaps = 117/669 (17%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED++VDT KLR+ +GPYLRE+FKDP KKKVMHGADRDI+WLQRDFGIY+CN+F
Sbjct: 264 MQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLF 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL LERNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYAREDTHYLLYI
Sbjct: 324 DTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYI 383
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD++K++L M K+ ++D+PL EVYKRSYDVC QLYEKELL+ENSYLH+YGLQ AG NA
Sbjct: 384 YDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNA 443
Query: 181 QQLAVVA-GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
QLA+VA GLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LKSKH YIE
Sbjct: 444 AQLAIVAVGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIE 503
Query: 240 RYMGPVLSIIKNSMQNAANFEVIAQKLK--------EERMEVASEETEVLVLDTSSNLKI 291
R + V+S+I+ SMQ+ A FE A LK ++ +E SE+ ++ D +S
Sbjct: 504 RNVDSVVSVIRQSMQHYAAFESAALSLKDVSPGNVMDKNIEPISEKKDLHTGDVAS---- 559
Query: 292 PNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASE 351
P++ S +QL+ + + + GLGS
Sbjct: 560 PSLKENS------------------SQLESTRDLIMGAANTNEGRGLGS----------- 590
Query: 352 NKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP--KRKFDGE 409
S+ S + K PS G GALLGN K+K +
Sbjct: 591 -------GLFGSAKVSAAVRISKKPSS---------------GLGALLGNAASKKKSRTD 628
Query: 410 KKDKEAMKLEQIKSSVNLPFHSIFAR------DEQLKPVDVMKSEPNKPDLPFPSSFGSG 463
+K KE +KLEQI+SSVNL FHS + + P K E +P S G
Sbjct: 629 EKVKEDVKLEQIRSSVNLSFHSFTEKVPDSKSTSETSPKVYGKPEEMSSTMPASVSKEDG 688
Query: 464 -EQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGED 522
++ K EE++ + S + + + DII LE+
Sbjct: 689 VKELKDDSEEASEIVGTSGRVSESKVSSSEMGDIILLEN--------------------- 727
Query: 523 GSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEA 582
G ++ +DE MSLS+LST+FQ+CF S N ++K +++ + FL ++PFD+EA
Sbjct: 728 ---GDEKKVDAEDEPMSLSELSTNFQKCFKSMNKSKK------AQKQTEFLNIEPFDYEA 778
Query: 583 ARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPA 642
ARK+++FGE G G + K + +KK S +Q+ E QG+RR AFPA
Sbjct: 779 ARKEVKFGE-------GHKGRQGKREAAAGQKKGSTQEQS-------EFGQGKRRQAFPA 824
Query: 643 TGNRSATFR 651
+GNRS +F+
Sbjct: 825 SGNRSMSFK 833
>gi|357146328|ref|XP_003573952.1| PREDICTED: exosome component 10-like [Brachypodium distachyon]
Length = 906
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 281/662 (42%), Positives = 394/662 (59%), Gaps = 74/662 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR +G LREVF+DPTKKKVMHGA RDI+WLQRDFGIY+CN+F
Sbjct: 306 MQISTRTEDFIVDTLKLRKYLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGIYVCNLF 365
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM +YAREDTHYLLYI
Sbjct: 366 DTGQASRILQMDRNSLEHLLHHFCGVVANKEYQSADWRLRPLPDEMTKYAREDTHYLLYI 425
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L + ES + + L EV KRS ++C QLYEKELL+++SYL+I+GL+ L+A
Sbjct: 426 YDLMRLRLVN---ESSDENDLLLEVCKRSNEICLQLYEKELLTDSSYLYIHGLKENELSA 482
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QLAV++GL +WRD +ARA+DESTGY+LPN+ L+EIAKQ+P T+ +L+R +KSK+ ++ER
Sbjct: 483 RQLAVLSGLYQWRDSVARAEDESTGYILPNKALLEIAKQMPLTSGRLKRTVKSKNPFLER 542
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLK----IPNVGR 296
++G V++II+N+++N+ FE IA++LK+ R+E E+LV D ++ + IP V
Sbjct: 543 HLGHVITIIRNAIENSVAFESIAEQLKKGRLE------ELLVADAKNSTEDTEMIPAVNA 596
Query: 297 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEAT 356
++++ L + P T + +S A L LG+ I E K
Sbjct: 597 DNIESNFVLSDGSALVPTVITNVVTASSGNVTSGASLGNLQLGN-------ITPETKSLV 649
Query: 357 HISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRK-----FDGEKK 411
+S + + L S +V +A VQ K+P FGALLG F G
Sbjct: 650 TLSGPTGLADTEVLT--NSSQQQVAKAKVQVSKRPT-AFGALLGKSSSGRRPNLFPGFSS 706
Query: 412 DKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIE 471
++ K+++IKSSV LPFH F S + P+ E
Sbjct: 707 EQSKSKVDKIKSSVVLPFHH------------------------FSGGVKSPATSLPVAE 742
Query: 472 ESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEM 531
S+ E E++I L+ E + G++ EM
Sbjct: 743 -----LAYSEPESICNDPASQMEEVIQLDTGTHNHLP-----ENCNVDGQNHCEPEDTEM 792
Query: 532 GKQDETMSLSDLSTSFQECFHSANNNRKPGKPERS-EEPSGFLQLKPFDFEAARKQIEFG 590
+ S +LS+ ++ F S N +R + ++ EEP QLKPFD+ ARK I FG
Sbjct: 793 -----SSSPRELSSGNEQRFRSINESRNVQQNHKALEEPEFHDQLKPFDYAEARKNISFG 847
Query: 591 EDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSA 648
E E+ D + +N SGDK++ S ++D+G + RRR AFP +GNRSA
Sbjct: 848 EVKSERRK--DNAVARAINKDSGDKRRTSKQPGGEEDEG--DFQNPRRRQAFPPSGNRSA 903
Query: 649 TF 650
T+
Sbjct: 904 TY 905
>gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group]
Length = 877
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 285/673 (42%), Positives = 402/673 (59%), Gaps = 96/673 (14%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR +G YLRE+FKDPTKKKVMHGADRDI+WLQRDFGIY+CN+F
Sbjct: 277 MQISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLF 336
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM++YAREDTHYLLYI
Sbjct: 337 DTGQASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYI 396
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L KES + + L EVYKRS ++C QLYEKELL+ +SYL+I+GL+ +A
Sbjct: 397 YDLMRLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDA 453
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QL+V+A + +WRD +AR +DESTGY+LPN+TL+EIAKQ+P T +L+R++KSK+SY+ER
Sbjct: 454 RQLSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNSYLER 513
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD 300
++G V+S I++++ N FE IA++LK+ R+E E+ V + SN D
Sbjct: 514 HLGHVISTIRSAIANCDAFESIAEQLKKGRLE------ELAVANMKSN-----------D 556
Query: 301 GVDALVGTTMPHPPAYTQLKQE----PPKVGSSVAELDRNGLGSFAHPGEAIAS------ 350
G +V PA + P +VA ++ +G+ +H + S
Sbjct: 557 GDTEMV-------PADDGNNDDDNVGPSDEHGAVASVE--NVGAASHCTGNVTSGASSVN 607
Query: 351 ---ENKEATHISTLSSSGQSRDLNACKSPSPR-VTEAAVQALKKPNRGFGALLGNP---- 402
EN T + S +D+ + + V +A VQ K+P FGALLG P
Sbjct: 608 VQLENPAETKSLGILSGVSGQDMEVLSNGDRKQVAKATVQVSKRPT-AFGALLGKPTSGR 666
Query: 403 -KRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFG 461
+ F G + +++IKSSV LPFH+ F + + E +P+ P S
Sbjct: 667 RQNLFSGFSSGQNM--VDKIKSSVALPFHN-FCGGAKSPATSIPLEESVRPE---PESI- 719
Query: 462 SGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGE 521
+ + P + + + + ++++ P P + + L D ++E + +P E
Sbjct: 720 --QYSDPACQTEDVIQLGTETDGPQPPENHNKDGQGHLVPD---------DMEMSRSPPE 768
Query: 522 DGSAGSALEMGKQDETMSLSDLSTSFQECFHSAN--NNRKPGKPERSEEPSGFLQLKPFD 579
SAG+ KQ FQ S N N KP +EP QLKPFD
Sbjct: 769 HSSAGA-----KQ-----------RFQSLIESRNQQQNHKP-----HQEPEFNHQLKPFD 807
Query: 580 FEAARKQIEFGEDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRR 637
+ ARK I FGE E+ D + +N SGDK + S A +++G ++ +GR+
Sbjct: 808 YAEARKNITFGERKAERIK--DNAVARAINKDSGDKGRTSNQFGAGENEGNRQNPRGRQ- 864
Query: 638 SAFPATGNRSATF 650
AFP +GNRSAT+
Sbjct: 865 -AFPPSGNRSATY 876
>gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica
Group]
Length = 902
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 285/673 (42%), Positives = 402/673 (59%), Gaps = 96/673 (14%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR +G YLRE+FKDPTKKKVMHGADRDI+WLQRDFGIY+CN+F
Sbjct: 302 MQISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLF 361
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM++YAREDTHYLLYI
Sbjct: 362 DTGQASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYI 421
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L KES + + L EVYKRS ++C QLYEKELL+ +SYL+I+GL+ +A
Sbjct: 422 YDLMRLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDA 478
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QL+V+A + +WRD +AR +DESTGY+LPN+TL+EIAKQ+P T +L+R++KSK+SY+ER
Sbjct: 479 RQLSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNSYLER 538
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD 300
++G V+S I++++ N FE IA++LK+ R+E E+ V + SN D
Sbjct: 539 HLGHVISTIRSAIANCDAFESIAEQLKKGRLE------ELAVANMKSN-----------D 581
Query: 301 GVDALVGTTMPHPPAYTQLKQE----PPKVGSSVAELDRNGLGSFAHPGEAIAS------ 350
G +V PA + P +VA ++ +G+ +H + S
Sbjct: 582 GDTEMV-------PADDGNNDDDNVGPSDEHGAVASVE--NVGAASHCTGNVTSGASSVN 632
Query: 351 ---ENKEATHISTLSSSGQSRDLNACKSPSPR-VTEAAVQALKKPNRGFGALLGNP---- 402
EN T + S +D+ + + V +A VQ K+P FGALLG P
Sbjct: 633 VQLENPAETKSLGILSGVSGQDMEVLSNGDRKQVAKATVQVSKRPT-AFGALLGKPTSGR 691
Query: 403 -KRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFG 461
+ F G + +++IKSSV LPFH+ F + + E +P+ P S
Sbjct: 692 RQNLFSGFSSGQNM--VDKIKSSVALPFHN-FCGGAKSPATSIPLEESVRPE---PESI- 744
Query: 462 SGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGE 521
+ + P + + + + ++++ P P + + L D ++E + +P E
Sbjct: 745 --QYSDPACQTEDVIQLGTETDGPQPPENHNKDGQGHLVPD---------DMEMSRSPPE 793
Query: 522 DGSAGSALEMGKQDETMSLSDLSTSFQECFHSAN--NNRKPGKPERSEEPSGFLQLKPFD 579
SAG+ KQ FQ S N N KP +EP QLKPFD
Sbjct: 794 HSSAGA-----KQ-----------RFQSLIESRNQQQNHKP-----HQEPEFNHQLKPFD 832
Query: 580 FEAARKQIEFGEDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRR 637
+ ARK I FGE E+ D + +N SGDK + S A +++G ++ +GR+
Sbjct: 833 YAEARKNITFGERKAERIK--DNAVARAINKDSGDKGRTSNQFGAGENEGNRQNPRGRQ- 889
Query: 638 SAFPATGNRSATF 650
AFP +GNRSAT+
Sbjct: 890 -AFPPSGNRSATY 901
>gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group]
Length = 854
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 283/671 (42%), Positives = 400/671 (59%), Gaps = 96/671 (14%)
Query: 3 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 62
ISTRTEDF+VDTLKLR +G YLRE+FKDPTKKKVMHGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 256 ISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDT 315
Query: 63 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 122
GQASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM++YAREDTHYLLYIYD
Sbjct: 316 GQASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYD 375
Query: 123 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 182
+M+++L KES + + L EVYKRS ++C QLYEKELL+ +SYL+I+GL+ +A+Q
Sbjct: 376 LMRLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDARQ 432
Query: 183 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 242
L+V+A + +WRD +AR +DESTGY+LPN+TL+EIAKQ+P T +L+R++KSK+ Y+ER++
Sbjct: 433 LSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNLYLERHL 492
Query: 243 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGV 302
G V+S I++++ N FE IA++LK+ R+E E+ V + SN DG
Sbjct: 493 GHVISTIRSAIANCDAFESIAEQLKKGRLE------ELAVANMKSN-----------DGD 535
Query: 303 DALVGTTMPHPPAYTQLKQE----PPKVGSSVAELDRNGLGSFAHPGEAIAS-------- 350
+V PA + P +VA ++ +G+ +H + S
Sbjct: 536 TEMV-------PADDGNNDDDNVGPSDEHGAVASVE--NVGAASHCTGNVTSGASSVNVQ 586
Query: 351 -ENKEATHISTLSSSGQSRDLNACKSPSPR-VTEAAVQALKKPNRGFGALLGNP-----K 403
EN T + S +D+ + + V +A VQ K+P FGALLG P +
Sbjct: 587 LENPAETKSLGILSGVSGQDMEVLSNGDRKQVAKATVQVSKRPT-AFGALLGKPTSGRRQ 645
Query: 404 RKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSG 463
F G + K+++IKSSV LPFH+ F + + E +P+ P S
Sbjct: 646 NLFSGFSSGQN--KVDKIKSSVALPFHN-FCGGAKSPATSIPLEESVRPE---PESI--- 696
Query: 464 EQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDG 523
+ + P + + + + ++++ P P + + L D ++E + +P E
Sbjct: 697 QYSDPACQTEDVIQLGTETDGPQPPENHNEDGQGHLVPD---------DMEMSRSPPEHS 747
Query: 524 SAGSALEMGKQDETMSLSDLSTSFQECFHSAN--NNRKPGKPERSEEPSGFLQLKPFDFE 581
SAG+ KQ FQ S N N KP +EP QLKPFD+
Sbjct: 748 SAGA-----KQ-----------RFQSLIESRNQQQNHKP-----HQEPEFNHQLKPFDYA 786
Query: 582 AARKQIEFGEDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRRSA 639
ARK I FGE E+ D + +N SGDK + S A +++G ++ +GR+ A
Sbjct: 787 EARKNITFGERKAERIK--DNAVARAINKDSGDKGRTSNQFGAGENEGNRQNPRGRQ--A 842
Query: 640 FPATGNRSATF 650
FP +GNRSAT+
Sbjct: 843 FPPSGNRSATY 853
>gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 906
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 283/667 (42%), Positives = 392/667 (58%), Gaps = 85/667 (12%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR +G LREVF+DPTKKKVMHGA RDI+WLQRDFGIY+CN+F
Sbjct: 307 MQISTRTEDFIVDTLKLRNCLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGIYVCNLF 366
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASR+L+++RNSLE+LL +FCGV ANKEYQ+ADWR+RPLPDEM +YAREDTHYLLYI
Sbjct: 367 DTGQASRILQMDRNSLEHLLQYFCGVTANKEYQSADWRLRPLPDEMTKYAREDTHYLLYI 426
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L + ES D L EV KRS ++C QLYEKELL+++SYL+I+GL+ L+A
Sbjct: 427 YDLMRLRLVN---ESSGDDL-LLEVCKRSNEICLQLYEKELLTDSSYLYIHGLKENDLSA 482
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QLAV+AGL +WRD +ARA+DESTGY+LPN+TL+EIAKQ+P T +L+R +KSK+ ++E
Sbjct: 483 RQLAVLAGLYQWRDGVARAEDESTGYILPNKTLLEIAKQMPVTTGRLKRTVKSKNKFLEH 542
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERME---VA-----SEETEVL-VLDTSSNLKI 291
Y+G V++ I+N++ NA FE IA++LK+ R+E VA +E+TE++ +D SN
Sbjct: 543 YLGHVITTIRNAVANADAFESIAEQLKKGRLEELMVAEVKDGAEDTEMISAVDADSN--- 599
Query: 292 PNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASE 351
++ ++ +V T+ +T G+S+ L + + E
Sbjct: 600 ----ESNLQLIEPVVAPTV-ITNIHTSFCTGNVTSGASLGNLQLDN----------VTPE 644
Query: 352 NKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRK-----F 406
K + ++GQ+ + S +V +A VQ K+P FGALLG P F
Sbjct: 645 TKSFGALP--GATGQADTVIPSNSGQQQVIKATVQVSKRPT-AFGALLGKPSSARRSNLF 701
Query: 407 DGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQT 466
G D+ K+E+IKSSV LPFH + P LP
Sbjct: 702 PGFSSDQSKSKVEKIKSSVVLPFHHFSG-----------GANPAATSLP----------- 739
Query: 467 KPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAG 526
V++S EP E I +D + E+ + L+T + E+G+A
Sbjct: 740 ------------VAKSVEP--------EAEIMCDDPASQMEEVI-QLDTGTDDPENGNAD 778
Query: 527 SALEM--GKQDETMSLSDLSTSFQECFHSANNNRK-PGKPERSEEPSGFLQLKPFDFEAA 583
E G D + S +LS+ ++ F N +R K + EEP QLK FD+ A
Sbjct: 779 GQSECKPGDTDVSSSPPELSSGIEQRFRPLNESRDLQQKHQAPEEPEFNDQLKAFDYAEA 838
Query: 584 RKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPAT 643
RK FGE E+ + +SGDK++ S ++ RRR AFP +
Sbjct: 839 RKNTSFGEVRSERRKDNAVARAINADSGDKRRSSKQIPGGGEEDEGNFQNPRRRQAFPPS 898
Query: 644 GNRSATF 650
GNRSAT+
Sbjct: 899 GNRSATY 905
>gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana]
Length = 578
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 200/268 (74%), Positives = 235/268 (87%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED++VDT KLR+ +GPYLRE+FKDP KKKVMHGADRDI+WLQRDFGIY+CN+F
Sbjct: 301 MQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLF 360
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL LERNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYAREDTHYLLYI
Sbjct: 361 DTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYI 420
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD++K++L M K+ ++D+PL EVYKRSYDVC QLYEKELL+ENSYLH+YGLQ AG NA
Sbjct: 421 YDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNA 480
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QLA+VAGLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LKSKH YIER
Sbjct: 481 AQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIER 540
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKE 268
+ V+S+I+ SMQ+ A FE A LK+
Sbjct: 541 NVDSVVSVIRQSMQHYAAFESAALSLKD 568
>gi|334183304|ref|NP_001185222.1| RRP6-like protein 1 [Arabidopsis thaliana]
gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana]
Length = 639
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 198/276 (71%), Positives = 232/276 (84%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED++VD KL +GPYLRE+FKDP KKKV+HGADRDI+WLQRDFGIY+CN+F
Sbjct: 156 MQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLF 215
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLERNSLE+LL H+CGV ANKEYQ ADWR+RPLPD M RYAREDTHYLLYI
Sbjct: 216 DTGQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYI 275
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +SYLH+YG+Q LNA
Sbjct: 276 YDVMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNA 335
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QL++VAGLCEWRD IARADDESTGYVLPN+TL +IAK++P A+LRRLLKSK Y+ER
Sbjct: 336 VQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLER 395
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 276
V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 396 NFDAVISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 431
>gi|145336746|ref|NP_175846.3| RRP6-like protein 1 [Arabidopsis thaliana]
gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana]
gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana]
gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana]
Length = 637
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 198/276 (71%), Positives = 232/276 (84%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED++VD KL +GPYLRE+FKDP KKKV+HGADRDI+WLQRDFGIY+CN+F
Sbjct: 156 MQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLF 215
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLERNSLE+LL H+CGV ANKEYQ ADWR+RPLPD M RYAREDTHYLLYI
Sbjct: 216 DTGQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYI 275
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +SYLH+YG+Q LNA
Sbjct: 276 YDVMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNA 335
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QL++VAGLCEWRD IARADDESTGYVLPN+TL +IAK++P A+LRRLLKSK Y+ER
Sbjct: 336 VQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLER 395
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 276
V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 396 NFDAVISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 431
>gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
lyrata]
gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
lyrata]
Length = 681
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 198/277 (71%), Positives = 231/277 (83%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED++VDT KL +GP+LRE+FKDP KKKVMHGAD DI+WLQRDFGIY+CN+F
Sbjct: 249 MQISTRTEDYIVDTFKLWDHIGPHLRELFKDPKKKKVMHGADHDIIWLQRDFGIYVCNLF 308
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLER SLE+LL H+CGV A+K+YQNADWR+RPLPD M RYAREDTHYLLYI
Sbjct: 309 DTGQASRVLKLERKSLEFLLKHYCGVAADKQYQNADWRIRPLPDVMTRYAREDTHYLLYI 368
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+I L +M KE E SD+PL E YK SYDVC QLYEKELL+ +SYLH YG++ LNA
Sbjct: 369 YDVMRIDLHTMAKEDEQSDSPLVEAYKGSYDVCMQLYEKELLTGDSYLHTYGVRSGNLNA 428
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QL++VAGLCEWRD IARADDESTGYVLPN+TL +IAK +P T A+LRRLLKSKH YIER
Sbjct: 429 VQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKDMPITTAQLRRLLKSKHPYIER 488
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEE 277
V+S+I+ SMQNAA FE + Q LK+ R E E+
Sbjct: 489 NFDAVISVIRRSMQNAAAFEPVVQSLKDWRPETVVEK 525
>gi|356571755|ref|XP_003554038.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 643
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 201/271 (74%), Positives = 235/271 (86%), Gaps = 1/271 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDFV+DTLK+R VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY+CNMF
Sbjct: 224 MQISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMF 283
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQ+SRVLKL+R SL+YLL FCGV ANKEYQ+ADWR+RPLPD MLRY REDTHYLLYI
Sbjct: 284 DTGQSSRVLKLDRYSLQYLLQQFCGVTANKEYQSADWRLRPLPDVMLRYGREDTHYLLYI 343
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+IKL ++ KESE SD PL EVYKRSYDVC QLYEKELL E+SYLHI+GL+GAG NA
Sbjct: 344 YDLMRIKLFALSKESEGSDNPLLEVYKRSYDVCMQLYEKELLKEDSYLHIWGLRGAGFNA 403
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL-KSKHSYIE 239
QQLAVV+GL EWRD +ARADDE GYVLPNR ++EIA Q+P + LRR++ ++KH Y+E
Sbjct: 404 QQLAVVSGLWEWRDGLARADDEGPGYVLPNRIILEIANQMPVIISNLRRIVGRTKHPYVE 463
Query: 240 RYMGPVLSIIKNSMQNAANFEVIAQKLKEER 270
R + +++I+++SMQNAA FE A +LKEE
Sbjct: 464 RSLDVIVNIVRHSMQNAAAFEEAALRLKEEH 494
>gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana]
Length = 642
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 198/278 (71%), Positives = 232/278 (83%), Gaps = 2/278 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED++VD KL +GPYLRE+FKDP KKKV+HGADRDI+WLQRDFGIY+CN+F
Sbjct: 156 MQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLF 215
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLKLERNSLE+LL H+CGV ANKEYQ ADWR+RPLPD M RYAREDTHYLLYI
Sbjct: 216 DTGQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYI 275
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +SYLH+YG+Q LNA
Sbjct: 276 YDVMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNA 335
Query: 181 QQLAVVA--GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
QL++VA GLCEWRD IARADDESTGYVLPN+TL +IAK++P A+LRRLLKSK Y+
Sbjct: 336 VQLSIVALQGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYL 395
Query: 239 ERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 276
ER V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 396 ERNFDAVISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 433
>gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
Length = 882
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 386/664 (58%), Gaps = 85/664 (12%)
Query: 3 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 62
ISTRTEDF+VDTLKLR +G YLRE F+DPTKKKVMHGA RDI+WLQRDF IY+CN+FDT
Sbjct: 287 ISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVCNLFDT 346
Query: 63 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 122
GQAS+VL+++RNSLE+LLHHFCGV ANKEYQ ADWR+RPLPDEM++YAREDTHYLLYIYD
Sbjct: 347 GQASKVLQMDRNSLEHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDTHYLLYIYD 406
Query: 123 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 182
+M+++L + ES + L EV KRS ++C QLYEKE L++ SYLHI+GL+ LNA+Q
Sbjct: 407 LMRLRLVN---ESSGENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNARQ 463
Query: 183 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 242
L+V++ L WRD IARA+DESTGY+LPN+TL+EIAK++P T+ KL+R++KS++ ++ER++
Sbjct: 464 LSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSGKLKRIVKSRNLFLERHL 523
Query: 243 GPVLSIIKNSMQNAANFEVIAQKLKEERMEV--------ASEETEVLVLDTSSNLKIPNV 294
G V++ I++++ + FE +A++LK+ ++E +SE+ E++ N++ PN
Sbjct: 524 GHVINNIRDAIAASGAFESVAEQLKKGKLEELTVADVKNSSEDIEMIPAVDVGNIEDPND 583
Query: 295 GRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKE 354
V V VG P +G+ +E LG+ E + E K+
Sbjct: 584 ESAVVSAVITNVGAA--------------PCMGTITSEA---SLGNMHL--EDVVPETKD 624
Query: 355 ATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPK--RK---FDGE 409
+ S + + L+ + + +A VQ K+P FGAL G P RK F G
Sbjct: 625 SGTSSGFTGLADTEKLSNDQQ---QAAKATVQVSKRPT-AFGALFGKPAAGRKPDLFLGF 680
Query: 410 KKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPI 469
+ K+++I SSV LPFH ++P+ P LP S S +
Sbjct: 681 PNVQGKTKVDKITSSVVLPFHHFSG-----------GAKPSSPILPAKESLHSEPEN--- 726
Query: 470 IEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSAL 529
I+ + PA R E++I L+ + DE + P E+G+
Sbjct: 727 IQHGD------------PACR--LEEVIQLDMETDEPQ-----------PPENGNEDGHC 761
Query: 530 EMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGF---LQLKPFDFEAARKQ 586
E + + S SD + ++ F + N R + +++ P F + + PFD+ ARK
Sbjct: 762 ETEDTEMSKSPSDDPSGTEQRFRTLNEERNIQQNQKT--PREFELSVPVVPFDYAEARKN 819
Query: 587 IEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNR 646
+ + E+ + +SGDK+ S +D+G RRR AFP +GNR
Sbjct: 820 LVSSQPKAERRKDDAVARAINTDSGDKRIASKKPGGGEDEGN--FQHPRRRQAFPPSGNR 877
Query: 647 SATF 650
SAT+
Sbjct: 878 SATY 881
>gi|356514082|ref|XP_003525736.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 506
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/267 (71%), Positives = 226/267 (84%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKL +GPYLREVFKDP+K+KVMHGAD D+VWLQRDFGIY+CN+F
Sbjct: 121 MQISTRTEDFIVDTLKLHSSIGPYLREVFKDPSKRKVMHGADNDVVWLQRDFGIYICNLF 180
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QAS+VLKLER SLEYLL HFC + ANKEYQ+ADWR+RPLP EMLRYAREDTHYLLYI
Sbjct: 181 DTHQASKVLKLERKSLEYLLCHFCDITANKEYQSADWRLRPLPYEMLRYAREDTHYLLYI 240
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+I+L SM KE E+ D PL EVYK SY VC +LYEKELL+E S+L IYGLQGAG NA
Sbjct: 241 YDFMRIELFSMLKEPESVDAPLVEVYKCSYKVCMRLYEKELLTEKSFLRIYGLQGAGFNA 300
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQLAVV+GL +WRD +AR D+STGYVLPN++++EIAKQ+P TA LR L+ S+H Y+E
Sbjct: 301 QQLAVVSGLFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVTANNLRLLVNSRHPYVEH 360
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLK 267
+ +++II++S+QN A FE IAQ LK
Sbjct: 361 NLDSLVNIIRHSIQNTAAFEEIAQLLK 387
>gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago
truncatula]
Length = 341
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/309 (64%), Positives = 244/309 (78%), Gaps = 5/309 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR VG +LR+VF DPTKKKV+HGADRDIVWLQRDFGIY+CNMF
Sbjct: 33 MQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMF 92
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLK+ER SL++LL HFCGV ANKEYQNADWR RPLPD M++Y REDTHYLLYI
Sbjct: 93 DTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYI 152
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+IKL + KESE+ D PL EVY+RSY+VC QLYEK+LL+ENS+L+I GL+GAG N
Sbjct: 153 YDLMRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEKDLLTENSFLNIKGLRGAGFNG 212
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL--KSKHSYI 238
QQLAVV+GL EWRDV+ARA+DESTGY+LPN+ ++ IAK +P TA+ LRRL+ +S+ Y+
Sbjct: 213 QQLAVVSGLYEWRDVLARAEDESTGYILPNKVILLIAKHMPVTASNLRRLIAERSRLPYV 272
Query: 239 ERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRES 298
ER V++I+++SM AA FE A +LKEE A E L L + N+ S
Sbjct: 273 ERNHDIVVNIVRHSMGKAAAFEEAALRLKEE--HAAFVEAAALRLKEEHAASVSNIS-NS 329
Query: 299 VDGVDALVG 307
++ L+G
Sbjct: 330 CQFLELLLG 338
>gi|357508795|ref|XP_003624686.1| Exosome complex exonuclease rrp6 [Medicago truncatula]
gi|355499701|gb|AES80904.1| Exosome complex exonuclease rrp6 [Medicago truncatula]
Length = 832
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 243/498 (48%), Positives = 300/498 (60%), Gaps = 87/498 (17%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR VG +LR+VF DPTKKKV+HGADRDIVWLQRDFGIY+CNMF
Sbjct: 331 MQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMF 390
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVLK+ER SL++LL HFCGV ANKEYQNADWR RPLPD M++Y REDTHYLLYI
Sbjct: 391 DTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYI 450
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+IKL + KESE+ D PL EVY+RSY+VC QLYEK+LL+ENS+L+I GL+GAG N
Sbjct: 451 YDLMRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEKDLLTENSFLNIKGLRGAGFNG 510
Query: 181 QQLAVVA----------------------------------------------------- 187
QQLAVV+
Sbjct: 511 QQLAVVSGKTMVGSLQPQNTLLRRGKETQANGVPKVLIMVVSDQKNKIVACIASALGFCT 570
Query: 188 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL--KSKHSYIERYMGPV 245
GL EWRDV+ARA+DESTGY+LPN+ ++ IAK +P TA+ LRRL+ +S+ Y+ER V
Sbjct: 571 GLYEWRDVLARAEDESTGYILPNKVILLIAKHMPVTASNLRRLIAERSRLPYVERNHDIV 630
Query: 246 LSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDAL 305
++I+++SM AA FE A +LKEE A E L L + NV SV+
Sbjct: 631 VNIVRHSMGKAAAFEEAALRLKEEH--AAFVEAAALRLKEEHAASVSNVA--SVED---- 682
Query: 306 VGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSG 365
GT P P+ + LK E GS I EN +IS S
Sbjct: 683 -GTEAPQSPSLS-LKDECAANGS-------------------IGIENATCVNISEKSLFS 721
Query: 366 QSRDLNACKSPSPRVTEAAVQALKKPNRGFGA-LLGNPKRKFDG--EKKDKEAMKLEQIK 422
+ +A K + VQALK P A LLGN + +G +KK K+ +K+EQ
Sbjct: 722 SDPNSSAVKLIGRQENGTNVQALKMPTVACDATLLGNSTSEGNGYPDKKGKKKIKVEQNV 781
Query: 423 SSVNLPFHSIFARDEQLK 440
SS+NLP HS +E+ K
Sbjct: 782 SSINLPSHSFLGNNEKSK 799
>gi|414871320|tpg|DAA49877.1| TPA: hypothetical protein ZEAMMB73_153639 [Zea mays]
Length = 901
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 271/679 (39%), Positives = 379/679 (55%), Gaps = 112/679 (16%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR +G YLRE F+DPTKKKVMHGA RDI+WLQRDF IY+CN+F
Sbjct: 304 MQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVCNLF 363
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQAS+VL+++RNSLE+LLHHFCGV ANKEYQ ADWR+RPLPDEM++YAREDTHYLLYI
Sbjct: 364 DTGQASKVLQMDRNSLEHLLHHFCGVAANKEYQAADWRLRPLPDEMIKYAREDTHYLLYI 423
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L + S + L EV KRS ++C QLYEKE L++ SYLHI+GL+ LNA
Sbjct: 424 YDLMRLRLVN---GSSCENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNA 480
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QL+V++ L WRD IARA+DESTGY+LPN+TL+EIAK++P T+ KL+R++KS++S +ER
Sbjct: 481 TQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSGKLKRMIKSRNSILER 540
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEV--------ASEETEVLVLDTSSNLKIP 292
+ V++ I++++ + FE I ++LK+ ++E +SE+TE++ N++ P
Sbjct: 541 NLNHVINNIRDAIAASGAFESIVEQLKKGKLEELTLADVKNSSEDTEMIPAVDVDNIEDP 600
Query: 293 NVGRESVDGVDALVGTTMPHPPAYT--------QLKQEPPKVGSSVAELDRNGLGSFAHP 344
+ V V VG P T L+ PK S A GL
Sbjct: 601 SDESAVVPAVITNVGAA----PCITSEASLGNMHLEDPVPKTKDSGASSGFTGL------ 650
Query: 345 GEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKR 404
++NK+ LS+ Q + +A VQ K+P FGAL G
Sbjct: 651 -----TDNKK------LSNDQQ------------QAAKATVQVSKRPT-AFGALFGKAAA 686
Query: 405 K-----FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSS 459
F G + K+++I SSV LPFH F+ +L + LP S
Sbjct: 687 GRRPDLFLGFSNVQGKTKVDKITSSVVLPFHH-FSGGAKL----------SSAALPAKES 735
Query: 460 FGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAP 519
S + I+ S+ PA + E++I L+ DE++ P
Sbjct: 736 LHSEPDS---IQHSD------------PACQ--LEEVIQLDMGTDEQQ-----------P 767
Query: 520 GEDGSAGSALEMGKQDETMSLS---DLSTSFQECFHSANNNRKPGKPERSEEPSGF-LQL 575
E+G+ +D MS S D S + Q F S N R + +++ F + +
Sbjct: 768 PENGNEDDG-HCETEDTEMSKSPSGDPSVTEQR-FRSLNEERNVKQNQKTPREFEFSVPV 825
Query: 576 KPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKE----L 631
PFD+ ARK + E+ + ++GDK++ S +K G E
Sbjct: 826 VPFDYAEARKNLVSSLPKAERRKDDAVARAINTDAGDKQRGS-----KKPPGGGENEGNF 880
Query: 632 SQGRRRSAFPATGNRSATF 650
RRR AFP +GNR+AT+
Sbjct: 881 QHPRRRQAFPPSGNRNATY 899
>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 524
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/436 (50%), Positives = 287/436 (65%), Gaps = 27/436 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+EDF++DTLKLR+ +G YL+E+FKDPTK+KVMHGADRDI+WLQRDF +Y+CN+F
Sbjct: 6 MQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFRVYVCNLF 65
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL++ERNSLE+LLHHFCGV ANK YQNADWR RPL DEM++YAREDTHYLLYI
Sbjct: 66 DTGQASRVLQMERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTHYLLYI 125
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L +ES + + L EV KRS D+C QLYEKELL++ SYLHIYGLQ L A
Sbjct: 126 YDLMRLRLQ---RESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELTA 182
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QLAVV+ L +WRD IAR DESTGYVLPN+ LIEIAK++PTT A LRR++KSK+ ++
Sbjct: 183 AQLAVVSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMPTTTADLRRIVKSKYPCVDD 242
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP-----NVG 295
+L + N+ +N+ FE IA++LK+ R+ E +LDT +++ NVG
Sbjct: 243 NFDLILDTVWNATENSGAFEAIAEQLKKVRL---GELDLKSILDTGEVIEMAPSDADNVG 299
Query: 296 RESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAI-ASENKE 354
S D D P + ++ S + + G I +SENK
Sbjct: 300 I-SFDPADQYSLA----PSSTANIRVTSNSRDSFMTDGTLTGSIWLHDKTSTIPSSENKT 354
Query: 355 ATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKR-----KFDGE 409
+ +S L+ + S + + T AAV+ LK+P FGAL+GN F G
Sbjct: 355 SWSLSGLTGPSNKEVM----SNNKQETHAAVEELKRP-MPFGALVGNSTYGRQTDYFGGF 409
Query: 410 KKDKEAMKLEQIKSSV 425
++ L+QI+SS
Sbjct: 410 PNEQAQSGLDQIQSSA 425
>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/435 (50%), Positives = 286/435 (65%), Gaps = 27/435 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+EDF++DTLKLR+ +G YL+E+FKDPTK+KVMHGADRDI+WLQRDF +Y+CN+F
Sbjct: 74 MQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFRVYVCNLF 133
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL++ERNSLE+LLHHFCGV ANK YQNADWR RPL DEM++YAREDTHYLLYI
Sbjct: 134 DTGQASRVLQMERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTHYLLYI 193
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L +ES + + L EV KRS D+C QLYEKELL++ SYLHIYGLQ L A
Sbjct: 194 YDLMRLRLQ---RESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELTA 250
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QLAVV+ L +WRD IAR DESTGYVLPN+ LIEIAK++PTT A LRR++KSK+ ++
Sbjct: 251 AQLAVVSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMPTTTADLRRIVKSKYPCVDD 310
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP-----NVG 295
+L + N+ +N+ FE IA++LK+ R+ E +LDT +++ NVG
Sbjct: 311 NFDLILDTVWNATENSGAFEAIAEQLKKVRL---GELDLKSILDTGEVIEMAPSDADNVG 367
Query: 296 RESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAI-ASENKE 354
S D D P + ++ S + + G I +SENK
Sbjct: 368 I-SFDPADQYSLA----PSSTANIRVTSNSRDSFMTDGTLTGSIWLHDKTSTIPSSENKT 422
Query: 355 ATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKR-----KFDGE 409
+ +S L+ S + + T AAV+ LK+P FGAL+GN F G
Sbjct: 423 SWSLSGLTGPSNKE----VMSNNKQETHAAVEELKRP-MPFGALVGNSTYGRQTDYFGGF 477
Query: 410 KKDKEAMKLEQIKSS 424
++ L+QI+SS
Sbjct: 478 PNEQAQSGLDQIQSS 492
>gi|356514085|ref|XP_003525737.1| PREDICTED: LOW QUALITY PROTEIN: exosome component 10-like [Glycine
max]
Length = 429
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 179/267 (67%), Positives = 220/267 (82%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKL +GPYLREVFKD + +KVMHGAD D++WLQRDFGIY+CN+F
Sbjct: 115 MQISTRTEDFIVDTLKLHSSIGPYLREVFKDLSNRKVMHGADNDVMWLQRDFGIYICNLF 174
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QAS+VLKLER SL+YLL HFC + ANKEYQ+ADWR+RPLP EM+RYAREDTHYLLYI
Sbjct: 175 DTHQASKVLKLERRSLKYLLCHFCDITANKEYQSADWRLRPLPYEMVRYAREDTHYLLYI 234
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+I+L SM E E+ D PL EVYK SY VC +LYEK LL+E S+L IYGLQGAG A
Sbjct: 235 YDLMRIELFSMLNEPESVDAPLVEVYKCSYKVCMRLYEKXLLTEKSFLRIYGLQGAGFTA 294
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQL +V+GL +WRD +AR D+STGYVLPN++++EIAKQ+P TA LR L+ S+H Y+E
Sbjct: 295 QQLVIVSGLFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVTANNLRLLVNSRHPYVEH 354
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLK 267
+ ++ II++S+QN + FE IAQ LK
Sbjct: 355 NLDSLVDIIRHSIQNTSAFEEIAQLLK 381
>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
Group]
gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
Length = 600
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/356 (55%), Positives = 264/356 (74%), Gaps = 16/356 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDFVVDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+F
Sbjct: 186 MQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLF 245
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL++ERNSLE+LL HFCGV ANKEYQNADWR RPL DEM++YAREDTHYLLY+
Sbjct: 246 DTGQASRVLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYM 305
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L KES + + L EV KRS ++C QLYEKELL++ SYLHIYGLQ L+A
Sbjct: 306 YDLMRLRLQ---KESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDA 362
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QLAVV L +WRD IAR DESTGYVLPN+ LIEIAK++PT A+L+R++KSK+ +++
Sbjct: 363 KQLAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDE 422
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLV---LDTSSNL--KIPNVG 295
+ V+ II N+ +++ FE A++LK+ER+E ++ + + + TS NL +I ++
Sbjct: 423 NLDQVVGIIWNATESSYAFESRAEQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMD 482
Query: 296 RESV-DGVDALVGTTMPHPPAYTQLKQEPP--KVGSSVAELDRNGLGSFAHPGEAI 348
+E + D + V + +LK+ VG+S + R+ G F++ E +
Sbjct: 483 KEILSDNIHQQVAQA-----TFQELKRPMALGAVGNSTSGGQRDFFGGFSNKSEKM 533
>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
Length = 599
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/356 (55%), Positives = 264/356 (74%), Gaps = 16/356 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDFVVDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+F
Sbjct: 185 MQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLF 244
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL++ERNSLE+LL HFCGV ANKEYQNADWR RPL DEM++YAREDTHYLLY+
Sbjct: 245 DTGQASRVLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYM 304
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L KES + + L EV KRS ++C QLYEKELL++ SYLHIYGLQ L+A
Sbjct: 305 YDLMRLRLQ---KESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDA 361
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QLAVV L +WRD IAR DESTGYVLPN+ LIEIAK++PT A+L+R++KSK+ +++
Sbjct: 362 KQLAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDE 421
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLV---LDTSSNL--KIPNVG 295
+ V+ II N+ +++ FE A++LK+ER+E ++ + + + TS NL +I ++
Sbjct: 422 NLDQVVGIIWNATESSYAFESRAEQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMD 481
Query: 296 RESV-DGVDALVGTTMPHPPAYTQLKQEPP--KVGSSVAELDRNGLGSFAHPGEAI 348
+E + D + V + +LK+ +G+S + R+ G F++ E +
Sbjct: 482 KEILSDNIHQQVAQA-----TFQELKRPMALGAIGNSTSGGQRDFFGGFSNKSEKM 532
>gi|293334443|ref|NP_001170525.1| uncharacterized protein LOC100384536 [Zea mays]
gi|238005848|gb|ACR33959.1| unknown [Zea mays]
gi|414864884|tpg|DAA43441.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 666
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/433 (49%), Positives = 281/433 (64%), Gaps = 44/433 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+F
Sbjct: 192 MQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLF 251
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL++ERNSLE+LL HFCGV A KEYQNADWR RPLPDEM++YAREDTHYLLYI
Sbjct: 252 DTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYI 311
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+ +L +ES + L EV+KRS ++C Q YEKELL++ SYLHIYGLQ L+A
Sbjct: 312 YDLMRQRLQ---RESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDA 368
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QLAVVA L EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+R++KSK+ Y+E
Sbjct: 369 RQLAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVES 428
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-----EVLVLDTSSNLKIPNVG 295
+ + + N+++ + FE IA++LK+ER+E + ++ EV LD ++
Sbjct: 429 NLELIAYTVWNALEYSYAFEGIAEQLKKERLEQVALKSGQTSDEVTPLDA-------DID 481
Query: 296 RESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEA 355
R + D D +VA R G S A +I E+K
Sbjct: 482 RSNFDSSDQ--------------------SANVNVASGSRAGFMSEAALISSIHLEDKTQ 521
Query: 356 THISTLSSS---GQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKD 412
T S +S GQ R +N S + + A+Q L + AL GN GE +
Sbjct: 522 TMSSVKTSQTLLGQIRPVNK-DVLSNNIHQQAIQDL---SLTLKALKGNLAS--GGESNE 575
Query: 413 KEAMKLEQIKSSV 425
+ + +E +SSV
Sbjct: 576 QAGINVENFRSSV 588
>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
Length = 702
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/308 (60%), Positives = 238/308 (77%), Gaps = 15/308 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+F
Sbjct: 192 MQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLF 251
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL++ERNSLE+LL HFCGV A KEYQNADWR RPLPDEM++YAREDTHYLLYI
Sbjct: 252 DTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYI 311
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+ +L KES + L EV+KRS ++C Q YEKELL++ SYLHIYGLQ L+A
Sbjct: 312 YDLMRQRLQ---KESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDA 368
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QLAVVA L EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+R++KSK+ Y+E
Sbjct: 369 KQLAVVAALHEWRDSIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVES 428
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-----EVLVLDTSSNLKIPNVG 295
+ + + N+++ + +E IA++LK+ER+E + ++ EV LD ++G
Sbjct: 429 NLELIAYTVWNALKYSYAYEGIAEQLKKERLEQLALKSGQASDEVTPLDA-------DIG 481
Query: 296 RESVDGVD 303
R + D D
Sbjct: 482 RSNFDSSD 489
>gi|357120688|ref|XP_003562057.1| PREDICTED: exosome component 10-like [Brachypodium distachyon]
Length = 690
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/271 (65%), Positives = 224/271 (82%), Gaps = 3/271 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR+ +GPYL++ FKDPTK+KVMHGADRDI+WLQRDF IY+CN+F
Sbjct: 192 MQISTRTEDFIVDTLKLRIYLGPYLQKHFKDPTKRKVMHGADRDIIWLQRDFRIYVCNLF 251
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL++ERNSLE+LLHHFCGV ANK YQNADWR RPL DEM++YAREDTHYLLYI
Sbjct: 252 DTGQASRVLQMERNSLEHLLHHFCGVTANKVYQNADWRSRPLSDEMIKYAREDTHYLLYI 311
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L KES + L EV RS ++C QLYEKELL++ SYLHIYGLQ L A
Sbjct: 312 YDLMRLRLQ---KESTCENDLLLEVQNRSNEICLQLYEKELLTDTSYLHIYGLQEHELEA 368
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QLAVV+ L +WRD AR +DESTGYVLPN+ LIEIAK++PT+ A+L+R++KSK+ ++E
Sbjct: 369 AQLAVVSALHQWRDYTARQEDESTGYVLPNKALIEIAKKMPTSTAELQRIVKSKYPFVEA 428
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERM 271
+L I+ N+ +N+ FE IA++LK+ R+
Sbjct: 429 NFDVILDIVWNATENSEAFEAIAEQLKKARL 459
>gi|414864885|tpg|DAA43442.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 577
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/272 (65%), Positives = 224/272 (82%), Gaps = 3/272 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+F
Sbjct: 192 MQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLF 251
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL++ERNSLE+LL HFCGV A KEYQNADWR RPLPDEM++YAREDTHYLLYI
Sbjct: 252 DTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYI 311
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+ +L +ES + L EV+KRS ++C Q YEKELL++ SYLHIYGLQ L+A
Sbjct: 312 YDLMRQRLQ---RESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDA 368
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QLAVVA L EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+R++KSK+ Y+E
Sbjct: 369 RQLAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVES 428
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERME 272
+ + + N+++ + FE IA++LK+ER+E
Sbjct: 429 NLELIAYTVWNALEYSYAFEGIAEQLKKERLE 460
>gi|414871321|tpg|DAA49878.1| TPA: hypothetical protein ZEAMMB73_153639 [Zea mays]
Length = 532
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 148/212 (69%), Positives = 180/212 (84%), Gaps = 3/212 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTLKLR +G YLRE F+DPTKKKVMHGA RDI+WLQRDF IY+CN+F
Sbjct: 304 MQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVCNLF 363
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQAS+VL+++RNSLE+LLHHFCGV ANKEYQ ADWR+RPLPDEM++YAREDTHYLLYI
Sbjct: 364 DTGQASKVLQMDRNSLEHLLHHFCGVAANKEYQAADWRLRPLPDEMIKYAREDTHYLLYI 423
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+++L + S + L EV KRS ++C QLYEKE L++ SYLHI+GL+ LNA
Sbjct: 424 YDLMRLRLVN---GSSCENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNA 480
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
QL+V++ L WRD IARA+DESTGY+LPN+T
Sbjct: 481 TQLSVLSSLYRWRDGIARAEDESTGYILPNKT 512
>gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
Length = 512
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 137/252 (54%), Positives = 187/252 (74%), Gaps = 4/252 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR++DF+VDTL LR +GP LR VF +P+ +KV+HG+DRDI+WLQRDFGIY+CN+F
Sbjct: 265 MQVSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLF 324
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL++ER L +LL FCGV +K YQ ADWR+RPL EML+YAREDTHYLLY+
Sbjct: 325 DTGQAARVLRMERFGLAFLLQTFCGVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYV 384
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD MK M +++E ++ EV +RS D+C QLYEKEL +E+S+LHIYGL L
Sbjct: 385 YDKMK----GMLRDAETTEDLYLEVCQRSRDLCLQLYEKELFTESSFLHIYGLAEKNLTP 440
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
++LA+VAGL WRD + R++DESTGY+LPN L +A+ P A +L+ +L+ H
Sbjct: 441 EKLAIVAGLYAWRDKLCRSEDESTGYILPNSLLFRLAEDAPQDAKRLQGILRRGHPVAAF 500
Query: 241 YMGPVLSIIKNS 252
+ +L +I+++
Sbjct: 501 HSAALLKVIRDA 512
>gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
Length = 512
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 134/252 (53%), Positives = 185/252 (73%), Gaps = 4/252 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR++DF+VDTL LR +GP LR VF +P+ +KV+HG+DRDI+WLQRDFGIY+CN+F
Sbjct: 265 MQVSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLF 324
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL++ER L +LL FC V +K YQ ADWR+RPL EML+YAREDTHYLLY+
Sbjct: 325 DTGQAARVLRMERFGLAFLLQTFCEVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYV 384
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD MK + +++E ++ EV +RS D+C QLYEKEL +E+S+LHIYGL L
Sbjct: 385 YDKMK----GLLRDAETTEDLYLEVCQRSRDLCLQLYEKELFTESSFLHIYGLAEKNLTP 440
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
++LA+VAGL WRD + R++DESTGY+LPN L +A+ P +L+ +L+ H
Sbjct: 441 EKLAIVAGLYAWRDKLCRSEDESTGYILPNSLLFRLAEDAPQDVKRLQGILRRGHPVAAF 500
Query: 241 YMGPVLSIIKNS 252
+ +L +I+++
Sbjct: 501 HSAALLKVIRDA 512
>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 515
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/252 (54%), Positives = 192/252 (76%), Gaps = 2/252 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR+EDF+VD L LR +GP L+++F D KKVMHGADRDI WLQRDFGIY+CNMF
Sbjct: 263 MQVSTRSEDFIVDALALRSHMGPSLKDLFADANVKKVMHGADRDIEWLQRDFGIYVCNMF 322
Query: 61 DTGQ-ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DTGQ A+RVL+LE L +L+ F +N +K YQ ADWR+RPLP EM++YAREDTHYLLY
Sbjct: 323 DTGQQAARVLQLEGFGLAFLMQRFLKINPDKRYQLADWRIRPLPAEMIKYAREDTHYLLY 382
Query: 120 IYDIMKIKLSSMPKESEN-SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+YD++++ L SM + N +D P+ +VYKRS D+C ++Y+K++L+E SYL +YGLQ
Sbjct: 383 LYDLLRVVLVSMRSTAGNDADDPVLQVYKRSRDICLKMYKKDILTETSYLSLYGLQDKNF 442
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
N++Q++V+AGL WRD +AR DESTG+VLPN+ L ++A+++P TA L+ ++ HS +
Sbjct: 443 NSEQMSVLAGLYAWRDNLARKLDESTGFVLPNQLLYKLAEEMPDTARTLQIAIRGPHSVV 502
Query: 239 ERYMGPVLSIIK 250
+Y VL +I+
Sbjct: 503 GQYTAEVLEVIR 514
>gi|449268441|gb|EMC79305.1| Exosome component 10, partial [Columba livia]
Length = 829
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 121/221 (54%), Positives = 161/221 (72%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E F DP KV+HGAD D+ WLQ+DFG+YL NMF
Sbjct: 294 MQISTRTEDFIIDTLELRSDMN-ILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMF 352
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C ++A+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYI
Sbjct: 353 DTHQAARLLNLGRHSLDHLLKLYCNIDADKQYQLADWRIRPLPEEMIQYARDDTHYLLYI 412
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD ++ ++ + T L V++RS D+C + Y K L S+ SYL +Y Q LN
Sbjct: 413 YDKVR---EALWERGNEQPTQLQVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNT 469
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLA L WRD +AR +DESTGYVLPN L++IA++LP
Sbjct: 470 QQLAAFRLLFAWRDKMARQEDESTGYVLPNHMLLKIAEELP 510
>gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864]
Length = 945
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/228 (54%), Positives = 156/228 (68%), Gaps = 5/228 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STRTED V+DTL +R + +LREVF +P KV HGAD D+VWLQ DFGIY NMF
Sbjct: 334 MQVSTRTEDVVIDTLAVRSSMH-HLREVFANPNILKVFHGADMDVVWLQHDFGIYTINMF 392
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL+L SL +LL +FC V A+K+YQ ADWR+RP+P EML+YAREDTHYLLYI
Sbjct: 393 DTGQAARVLELGSYSLAHLLRYFCNVTADKKYQLADWRIRPIPAEMLQYAREDTHYLLYI 452
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-ENSYLHIYGLQGAGLN 179
YD ++ +L S ES N L Y +S DVC + YEK L ENS++ ++
Sbjct: 453 YDRLRNELVSRSNESSNL---LRVAYAKSRDVCLKTYEKPLFDPENSHMQLFLKHSRTFG 509
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
QQ+ V L WRD + R +DESTGYVLPN L IA+ LPT +A +
Sbjct: 510 PQQMQVFKALFAWRDRMGREEDESTGYVLPNHMLFHIAEALPTESAGI 557
>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
Length = 552
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/252 (52%), Positives = 165/252 (65%), Gaps = 4/252 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR DF+VDTL+LR + L E F +P KV HGAD D+ WLQRDFGIY+ NMF
Sbjct: 291 MQISTRDHDFLVDTLELRNDLH-LLNESFTNPNILKVFHGADMDVGWLQRDFGIYVVNMF 349
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL LER SL +LL FCGV A+K+YQ ADWR+RPLP+EM+RYAREDTHYLLYI
Sbjct: 350 DTGQASRVLALERFSLAFLLKKFCGVTADKQYQLADWRIRPLPEEMIRYAREDTHYLLYI 409
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+D ++ +L E+ N L VY RS +VC++ YEK L + SY+++Y Q LN
Sbjct: 410 HDRLRNELIRTGNENNNL---LLSVYSRSTEVCQKHYEKPLFTSESYMNLYTKQRRPLNP 466
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QL L WRD IAR +DES GYVLPN L IA+ LP + + +++
Sbjct: 467 VQLRAFRALYAWRDTIARREDESYGYVLPNHMLFTIAETLPREPQGVLACCNPVPTLVKQ 526
Query: 241 YMGPVLSIIKNS 252
Y+ V +I S
Sbjct: 527 YVNEVHQLILQS 538
>gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus]
Length = 910
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/221 (54%), Positives = 159/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E F DP KV+HGAD D+ WLQ+DFG+YL NMF
Sbjct: 347 MQISTRTEDFIIDTLELRSDMS-ILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMF 405
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L ++SL++LL +C V+A+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYI
Sbjct: 406 DTHQAARLLNLGKHSLDHLLKLYCSVDADKQYQLADWRIRPLPEEMIQYARDDTHYLLYI 465
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ ++ + T L V++RS D+C + Y K L S+ SYL +Y Q LN
Sbjct: 466 YDKMR---EALWERGNEQPTQLKVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNT 522
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLA L WRD AR +DES GYVLPN L++IA++LP
Sbjct: 523 QQLAAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELP 563
>gi|344283519|ref|XP_003413519.1| PREDICTED: exosome component 10 isoform 2 [Loxodonta africana]
Length = 862
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL H+CGV +NK+YQ ADWR+RPLPDEML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKHYCGVESNKQYQLADWRIRPLPDEMLHYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWERGNEQP---VQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFSWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|344283517|ref|XP_003413518.1| PREDICTED: exosome component 10 isoform 1 [Loxodonta africana]
Length = 887
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL H+CGV +NK+YQ ADWR+RPLPDEML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKHYCGVESNKQYQLADWRIRPLPDEMLHYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWERGNEQP---VQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFSWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo]
Length = 888
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 158/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E F DP KV+HGAD D+ WLQ+DFG+YL NMF
Sbjct: 325 MQISTRTEDFIIDTLELRSDMS-ILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMF 383
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L ++SL++LL +C V+A+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYI
Sbjct: 384 DTHQAARLLNLGKHSLDHLLKLYCSVDADKQYQLADWRIRPLPEEMIQYARDDTHYLLYI 443
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ ++ + T L V++RS D+C + Y K L S+ SYL +Y Q LN
Sbjct: 444 YDKMR---EALWEGGNKQPTQLKVVWQRSRDICLKKYIKPLFSDESYLELYRRQKRHLNT 500
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN L++IA++LP
Sbjct: 501 QQLTAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELP 541
>gi|345327688|ref|XP_003431189.1| PREDICTED: exosome component 10 [Ornithorhynchus anatinus]
Length = 864
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR ++ L E F DP+ KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 302 MQISTRTEDFIIDTLELRSELY-ILNESFTDPSIVKVFHGADSDIEWLQKDFGLYVVNMF 360
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL+YLL H+C V A+K+YQ ADWR+RPLP EML YAR+DTHYLL++
Sbjct: 361 DTHQAARLLNLGRHSLDYLLKHYCNVEADKQYQLADWRIRPLPREMLNYARDDTHYLLFV 420
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M++ L E L V++RS D+C + + K + +E SYL +Y LN
Sbjct: 421 YDKMRLDLWERGNE---QPVQLQVVWQRSKDICLKRFIKPIFTEESYLELYKKHKKHLNT 477
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 478 QQLTAFQLLFSWRDKTARKEDESFGYVLPNHMMLKIAEELP 518
>gi|351713711|gb|EHB16630.1| Exosome component 10 [Heterocephalus glaber]
Length = 882
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/221 (54%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E +P KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL+YLL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDYLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 448 YDKMRLELWERGNEQP---TQLQAVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFSWRDKTARREDESFGYVLPNHMMLKIAEELP 545
>gi|354502290|ref|XP_003513220.1| PREDICTED: exosome component 10 isoform 1 [Cricetulus griseus]
Length = 885
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 159/223 (71%), Gaps = 8/223 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFILDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD M+++L +D P L V++RS D+C + + K + ++ SYL +Y Q L
Sbjct: 448 YDRMRLELW-----ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N+QQLA L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 503 NSQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|354502292|ref|XP_003513221.1| PREDICTED: exosome component 10 isoform 2 [Cricetulus griseus]
Length = 860
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 159/223 (71%), Gaps = 8/223 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFILDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD M+++L +D P L V++RS D+C + + K + ++ SYL +Y Q L
Sbjct: 448 YDRMRLELW-----ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N+QQLA L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 503 NSQQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|432098121|gb|ELK28008.1| Exosome component 10 [Myotis davidii]
Length = 876
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 318 MQISTRTEDFIVDTLELRSDLY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 376
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL H+C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 377 DTHQAARLLNLGRHSLDHLLKHYCNVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 436
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 437 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 493
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 494 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 534
>gi|392340770|ref|XP_003754164.1| PREDICTED: exosome component 10-like isoform 1 [Rattus norvegicus]
gi|392348528|ref|XP_003750136.1| PREDICTED: exosome component 10-like isoform 1 [Rattus norvegicus]
gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus]
Length = 885
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 158/223 (70%), Gaps = 8/223 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD M+++L +D P L V++RS D+C + + K + ++ SYL +Y Q L
Sbjct: 448 YDRMRLELW-----ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N+QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|392340772|ref|XP_003754165.1| PREDICTED: exosome component 10-like isoform 2 [Rattus norvegicus]
gi|392348530|ref|XP_003750137.1| PREDICTED: exosome component 10-like isoform 2 [Rattus norvegicus]
Length = 860
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 158/223 (70%), Gaps = 8/223 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD M+++L +D P L V++RS D+C + + K + ++ SYL +Y Q L
Sbjct: 448 YDRMRLELW-----ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N+QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 503 NSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated
autoantigen homolog [Mus musculus]
gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus]
gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus]
Length = 887
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 448 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|359319087|ref|XP_535408.4| PREDICTED: exosome component 10 isoform 2 [Canis lupus familiaris]
Length = 886
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/221 (54%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DPT KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E L V++RS D+C + + K L ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWERGNEQP---VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus]
Length = 916
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 332 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 390
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 391 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 450
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 451 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 507
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 508 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 548
>gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus]
gi|341940669|sp|P56960.2|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen
PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma
autoantigen 2 homolog
Length = 887
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 448 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus]
Length = 887
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 448 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus]
Length = 864
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 331 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 389
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 390 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 449
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 450 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 506
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 547
>gi|355686789|gb|AER98187.1| exosome component 10 [Mustela putorius furo]
Length = 732
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 205 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 263
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 264 DTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLHYARDDTHYLLYI 323
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 324 YDKMRLELWERGNEQP---VQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNT 380
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 381 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 421
>gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus]
Length = 862
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 448 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|359319089|ref|XP_003638993.1| PREDICTED: exosome component 10 isoform 1 [Canis lupus familiaris]
Length = 861
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/221 (54%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DPT KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E L V++RS D+C + + K L ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWERGNEQP---VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated
autoantigen homolog [Mus musculus]
Length = 831
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 448 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda
melanoleuca]
Length = 887
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR ++ L E DP+ KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSEMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E L ++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWERGNEQP---VQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|45708813|gb|AAH67962.1| exosome component 10 [Xenopus (Silurana) tropicalis]
Length = 883
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED+++D L+LR + L E F +P+ KV+HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 325 MQISTRTEDYIIDVLELRSNMY-ILNESFTNPSIIKVLHGADSDIEWLQKDFGLYIVNMF 383
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V ++K YQ ADWR+RPLP+EM+ YAR DTHYLL+I
Sbjct: 384 DTHQAARILNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMIEYARADTHYLLFI 443
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ L E +N L V+++S D+C + + K + +E+SYL +Y Q LN
Sbjct: 444 YDKMRTALLGAANEQQNL---LQLVWQKSRDICLKKFTKSIFTEDSYLELYQKQKKHLNT 500
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD IAR +DESTGYVLPN L++I ++LP
Sbjct: 501 QQLTAFRLLFAWRDKIARQEDESTGYVLPNHMLLKITEELP 541
>gi|348041370|ref|NP_998833.2| exosome component 10 [Xenopus (Silurana) tropicalis]
Length = 890
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED+++D L+LR + L E F +P+ KV+HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 332 MQISTRTEDYIIDVLELRSNMY-ILNESFTNPSIIKVLHGADSDIEWLQKDFGLYIVNMF 390
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V ++K YQ ADWR+RPLP+EM+ YAR DTHYLL+I
Sbjct: 391 DTHQAARILNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMIEYARADTHYLLFI 450
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ L E +N L V+++S D+C + + K + +E+SYL +Y Q LN
Sbjct: 451 YDKMRTALLGAANEQQNL---LQLVWQKSRDICLKKFTKSIFTEDSYLELYQKQKKHLNT 507
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD IAR +DESTGYVLPN L++I ++LP
Sbjct: 508 QQLTAFRLLFAWRDKIARQEDESTGYVLPNHMLLKITEELP 548
>gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda
melanoleuca]
Length = 885
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR ++ L E DP+ KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 352 MQISTRTEDFIIDTLELRSEMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMF 410
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 411 DTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 470
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E L ++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 471 YDKMRLELWERGNEQP---VQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHLNT 527
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 528 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 568
>gi|338722160|ref|XP_003364495.1| PREDICTED: exosome component 10 isoform 2 [Equus caballus]
Length = 861
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 156/223 (69%), Gaps = 8/223 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VDTL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRREDFIVDTLELRSDMY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKRYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD M+++L +D P L V++RS DVC + + K + ++ SYL +Y Q L
Sbjct: 448 YDKMRLELW-----ERGNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|110739343|dbj|BAF01584.1| hypothetical protein [Arabidopsis thaliana]
Length = 377
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/171 (66%), Positives = 137/171 (80%)
Query: 106 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 165
M RYAREDTHYLLYIYD+M+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +
Sbjct: 1 MKRYAREDTHYLLYIYDVMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRD 60
Query: 166 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
SYLH+YG+Q LNA QL++VAGLCEWRD IARADDESTGYVLPN+TL +IAK++P A
Sbjct: 61 SYLHVYGVQTGNLNAVQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVA 120
Query: 226 KLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 276
+LRRLLKSK Y+ER V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 121 QLRRLLKSKLPYLERNFDAVISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 171
>gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 isoform 1 [Equus caballus]
Length = 886
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 156/223 (69%), Gaps = 8/223 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VDTL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRREDFIVDTLELRSDMY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKRYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD M+++L +D P L V++RS DVC + + K + ++ SYL +Y Q L
Sbjct: 448 YDKMRLELW-----ERGNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|395521908|ref|XP_003765056.1| PREDICTED: exosome component 10 [Sarcophilus harrisii]
Length = 992
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 153/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 436 MQISTRTEDFIIDTLELRCDLY-ILNESFTDPAIVKVFHGADMDIEWLQKDFGLYVVNMF 494
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V NK+YQ ADWR+RPLP+EM YAR DTHYLLYI
Sbjct: 495 DTHQAARILNLGRHSLDHLLKLYCNVETNKQYQLADWRIRPLPEEMFNYARHDTHYLLYI 554
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ S + + + L V++RS D+C + + K + +E+SYL +Y Q LN
Sbjct: 555 YDKMR---SDLWERANGQPAQLQVVWQRSKDICLKKFIKPIFTEDSYLELYRKQKKHLNT 611
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 612 QQLTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELP 652
>gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis]
gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis]
Length = 883
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 154/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED+++D L+LR + L E F +P+ KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 325 MQISTRTEDYIIDVLELRSNLY-ILNESFTNPSIIKVFHGADSDIEWLQKDFGLYIVNMF 383
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V ++K YQ ADWR+RPLP+EML YAR DTHYLLYI
Sbjct: 384 DTHQAARILNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMLEYARVDTHYLLYI 443
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+I L N L V++RS D+C + + K + +E SYL +Y Q LN
Sbjct: 444 YDKMRIALLDAANGQPNL---LQLVWQRSKDICLKRFTKLIFTEESYLDLYQKQKKHLNT 500
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD IAR +DESTGYVLPN L++IA++LP
Sbjct: 501 QQLTAFRLLFAWRDKIARREDESTGYVLPNHMLMKIAEELP 541
>gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca]
Length = 834
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR ++ L E DP+ KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSEMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E L ++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWERGNEQP---VQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|147776669|emb|CAN74351.1| hypothetical protein VITISV_038575 [Vitis vinifera]
Length = 452
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 258/480 (53%), Gaps = 76/480 (15%)
Query: 220 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET- 278
+P T +KLRRLLKSKH Y+ER +GPV+SII++S+ NAA FE AQ LKE + ASE+
Sbjct: 1 MPVTTSKLRRLLKSKHPYVERNLGPVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNT 60
Query: 279 ------EVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAE 332
E L ++ ++++ + ES D + + G + K+ + GS++
Sbjct: 61 VDTTGFEALPSESPTSIRAADARAESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDG 120
Query: 333 LDRNGLGSFAHP-GEAIASENKEATHI-----STLSSSGQSRDLNA--CKSPSPRVTEAA 384
G G + P GE+ ++++ + I T +SSGQSRD + S S +VTE
Sbjct: 121 PGSKGQGGSSEPPGESKEVKDEKDSFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVT 180
Query: 385 VQALKKPNRGFGALLGNP--KRKFDGEKK-------------------------DKEAMK 417
VQ LKKPNR FG+LLGN KRK + + K KE +K
Sbjct: 181 VQLLKKPNRAFGSLLGNSASKRKLNSDPKVCNSDWVSLAQPVKMQDWVEECPLBGKEDIK 240
Query: 418 LEQIKSSVNLPFHSIFARD-EQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRV 476
LEQIKSSVNLPFHS + E+L +D EE +V
Sbjct: 241 LEQIKSSVNLPFHSFSGGNREELSKLDT--------------------------EEHTKV 274
Query: 477 TVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP---GEDGSAGSALEM 531
SEEP PA+R D E+II E++ +E GN A+ ED GS LEM
Sbjct: 275 LETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLEGKEDNPKGSGLEM 334
Query: 532 GKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGE 591
+ +E MSL+DLS+ FQ+C S N RK + E+S+E +G LQ+KPFD+EAARKQ+ FGE
Sbjct: 335 DEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPFDYEAARKQVRFGE 394
Query: 592 DAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 651
D E+S G +G + V+S KK+ + Q +D T + +QGRRR AFPATGNRS TFR
Sbjct: 395 DP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQAFPATGNRSVTFR 452
>gi|426239734|ref|XP_004013774.1| PREDICTED: exosome component 10 isoform 1 [Ovis aries]
Length = 887
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-VLNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|426239736|ref|XP_004013775.1| PREDICTED: exosome component 10 isoform 2 [Ovis aries]
Length = 862
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-VLNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus]
Length = 705
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 306 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 364
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 365 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 424
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 425 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 481
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 482 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 522
>gi|348571393|ref|XP_003471480.1| PREDICTED: exosome component 10-like isoform 1 [Cavia porcellus]
Length = 885
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR ++ L E +P KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFLVDTLELRSEMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWRVRPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLRLYCGVESNKQYQLADWRVRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M++ L E L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 448 YDKMRLDLWERGNEQP---VQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|126328720|ref|XP_001364275.1| PREDICTED: exosome component 10 isoform 2 [Monodelphis domestica]
Length = 836
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 153/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E F DP+ KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 305 MQISTRTEDFIIDTLELRSDLY-ILNESFTDPSIVKVFHGADMDIEWLQKDFGLYVVNMF 363
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EM YAR DTHYLLYI
Sbjct: 364 DTHQAARILNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMFNYARHDTHYLLYI 423
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ S + + L V++RS D+C + + K + E+SYL +Y Q LN
Sbjct: 424 YDKMR---SDLWDRANGQPAQLQVVWQRSKDICLKRFIKPIFMEDSYLELYRKQKKHLNT 480
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 481 QQLTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELP 521
>gi|426327783|ref|XP_004024690.1| PREDICTED: exosome component 10 [Gorilla gorilla gorilla]
Length = 909
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 353 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 411
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 412 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 471
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K L ++ SYL +Y Q LN
Sbjct: 472 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPLFTDESYLELYRKQKKHLNT 528
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 529 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|126328718|ref|XP_001364197.1| PREDICTED: exosome component 10 isoform 1 [Monodelphis domestica]
Length = 861
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 153/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E F DP+ KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 305 MQISTRTEDFIIDTLELRSDLY-ILNESFTDPSIVKVFHGADMDIEWLQKDFGLYVVNMF 363
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EM YAR DTHYLLYI
Sbjct: 364 DTHQAARILNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMFNYARHDTHYLLYI 423
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ S + + L V++RS D+C + + K + E+SYL +Y Q LN
Sbjct: 424 YDKMR---SDLWDRANGQPAQLQVVWQRSKDICLKRFIKPIFMEDSYLELYRKQKKHLNT 480
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 481 QQLTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELP 521
>gi|348571395|ref|XP_003471481.1| PREDICTED: exosome component 10-like isoform 2 [Cavia porcellus]
Length = 860
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR ++ L E +P KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFLVDTLELRSEMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWRVRPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLRLYCGVESNKQYQLADWRVRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M++ L E L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 448 YDKMRLDLWERGNEQP---VQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|444728183|gb|ELW68647.1| Serine/threonine-protein kinase mTOR [Tupaia chinensis]
Length = 3780
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 3018 MQISTRTEDFIIDTLELRSDMY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 3076
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 3077 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 3136
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + N L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 3137 YDKMRLELW---ERGGNQPVQLQVVWQRSRDICLKKFLKPIFTDESYLELYRKQKKHLNT 3193
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 3194 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 3234
>gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens]
Length = 899
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 353 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 411
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 412 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 471
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 472 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 528
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 529 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|403289992|ref|XP_003936119.1| PREDICTED: exosome component 10 [Saimiri boliviensis boliviensis]
Length = 884
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 327 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 385
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 386 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 445
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + S L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 446 YDKMRLELW---ERSNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 502
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 503 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 543
>gi|431906334|gb|ELK10531.1| Exosome component 10 [Pteropus alecto]
Length = 883
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 154/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 323 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 381
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 382 DTHQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 441
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 442 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 498
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 499 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 539
>gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys]
Length = 912
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 353 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 411
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 412 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 471
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 472 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 528
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 529 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|402852919|ref|XP_003891154.1| PREDICTED: exosome component 10 [Papio anubis]
Length = 844
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 289 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 347
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 348 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 407
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 408 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 464
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 465 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 505
>gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus]
Length = 886
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 158/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STRTEDF++DTL+LR ++ L E +PT KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 326 MQVSTRTEDFIIDTLELRSEMY-LLNESLTNPTIVKVFHGADSDIEWLQKDFGLYVVNMF 384
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V+++K+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 385 DTHQAARLLNLGRHSLDHLLKLYCSVDSDKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 444
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 445 YDRMRLELWERGNEQP---TQLQVVWQRSRDLCLKKFIKPIFTDESYLELYRKQKKHLNT 501
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 502 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 542
>gi|410215482|gb|JAA04960.1| exosome component 10 [Pan troglodytes]
gi|410256428|gb|JAA16181.1| exosome component 10 [Pan troglodytes]
gi|410289248|gb|JAA23224.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|410215484|gb|JAA04961.1| exosome component 10 [Pan troglodytes]
Length = 890
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|397503016|ref|XP_003822132.1| PREDICTED: exosome component 10 [Pan paniscus]
Length = 909
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 353 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 411
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 412 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 471
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 472 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 528
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 529 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes]
Length = 909
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 353 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 411
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 412 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 471
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 472 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 528
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 529 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|395841111|ref|XP_003793392.1| PREDICTED: exosome component 10 [Otolemur garnettii]
Length = 881
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 157/225 (69%), Gaps = 12/225 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDFV+DTL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 324 MQISTRTEDFVIDTLELRSDLY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 382
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 383 DTHQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 442
Query: 121 YDIMKIKL----SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
YD M+++L P +S+ V++RS D+C + + K + ++ SYL +Y Q
Sbjct: 443 YDKMRLELWERGGGRPVQSQ-------VVWQRSRDICLKKFIKPIFTDESYLELYRKQKK 495
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
LN QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 496 HLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 540
>gi|355744909|gb|EHH49534.1| hypothetical protein EGM_00210 [Macaca fascicularis]
Length = 887
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 353 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 411
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 412 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 471
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 472 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 528
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 529 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|410256430|gb|JAA16182.1| exosome component 10 [Pan troglodytes]
Length = 890
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]
gi|8928564|sp|Q01780.2|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen
PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 100 kDa;
Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma
autoantigen 2
gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens]
gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens]
gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens]
gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens]
gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct]
gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct]
gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct]
Length = 885
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta]
Length = 884
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 353 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 411
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 412 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 471
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 472 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 528
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 529 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|410350403|gb|JAA41805.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|343962561|dbj|BAK62868.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens]
Length = 884
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 353 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 411
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 412 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 471
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 472 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 528
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 529 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]
gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens]
gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens]
Length = 860
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta]
gi|355557539|gb|EHH14319.1| hypothetical protein EGK_00224 [Macaca mulatta]
Length = 884
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|380813854|gb|AFE78801.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|383419273|gb|AFH32850.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|384947748|gb|AFI37479.1| exosome component 10 isoform 1 [Macaca mulatta]
Length = 882
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|380813852|gb|AFE78800.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|383419271|gb|AFH32849.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|384947746|gb|AFI37478.1| exosome component 10 isoform 1 [Macaca mulatta]
Length = 884
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|410966022|ref|XP_003989537.1| PREDICTED: exosome component 10 isoform 2 [Felis catus]
Length = 862
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 154/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK++Q ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVESNKQFQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELW---ERGNQQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|335290492|ref|XP_003127631.2| PREDICTED: exosome component 10 isoform 1 [Sus scrofa]
Length = 886
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 153/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M++ L E L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLALWERGNEQPAQ---LQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|410966020|ref|XP_003989536.1| PREDICTED: exosome component 10 isoform 1 [Felis catus]
Length = 887
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 154/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK++Q ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVESNKQFQLADWRIRPLPEEMLNYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELW---ERGNQQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|335290494|ref|XP_003356194.1| PREDICTED: exosome component 10 isoform 2 [Sus scrofa]
Length = 861
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 153/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M++ L E L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLALWERGNEQPAQ---LQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|432864718|ref|XP_004070425.1| PREDICTED: exosome component 10-like [Oryzias latipes]
Length = 890
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/223 (52%), Positives = 151/223 (67%), Gaps = 8/223 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL+LR ++ L E F DPT KV HGAD DI WLQRDFG+Y+ N+F
Sbjct: 329 MQISTRDEDFIIDTLELRSEMY-ILNEAFTDPTIVKVFHGADSDIEWLQRDFGLYVVNLF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT Q SR L L RNSL++LL HFC V+++K YQ ADWR+RPLPDEM++YAR DTHYLLYI
Sbjct: 388 DTHQGSRALHLARNSLDHLLRHFCNVDSDKRYQLADWRIRPLPDEMVQYARTDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD ++ +L N P L V+ +S D+ Y K + +E+SYL + Q
Sbjct: 448 YDCVRAQLL-----DSNHGQPGLLQSVWNKSKDISLTKYMKPVFTEDSYLEVLRKQKRSF 502
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N QQL L WRD +AR +DESTGY LP +I+I+++LP
Sbjct: 503 NTQQLTAFRLLFAWRDKLARQEDESTGYTLPIHMMIKISEELP 545
>gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus]
gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus]
gi|296479174|tpg|DAA21289.1| TPA: exosome component 10 [Bos taurus]
Length = 702
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
Length = 832
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 147/221 (66%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR D++VDTL LR + L + F DP KV HGAD DI WLQRDFG+Y+ NMF
Sbjct: 314 MQVSTRDHDYIVDTLALRADLH-VLNDTFTDPKVVKVFHGADMDIQWLQRDFGVYVVNMF 372
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQAS VL L R+SL YLL +C V +K+YQ ADWR+RPLP EM +YAREDTHYLL+I
Sbjct: 373 DTGQASHVLGLPRHSLAYLLKTYCDVEPDKKYQLADWRIRPLPSEMTQYAREDTHYLLHI 432
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ S + N L +RS VC Q Y+K L +E+SYL++ N+
Sbjct: 433 YDCMR---SELLDRGNNEANLLHNTLERSRQVCLQRYQKLLYTEDSYLNLLNKHKKTFNS 489
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL V + WRD IAR +DESTGYVLPN L+ +A+ LP
Sbjct: 490 QQLHAVRLVYRWRDTIARQEDESTGYVLPNHMLLVLAETLP 530
>gi|348514838|ref|XP_003444947.1| PREDICTED: exosome component 10 [Oreochromis niloticus]
Length = 892
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 118/223 (52%), Positives = 153/223 (68%), Gaps = 8/223 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL+LR ++ L E F DP+ KV HGAD DI WLQRDFG+Y+ N+F
Sbjct: 329 MQISTRGEDFIIDTLELRSEMY-ILNEAFTDPSIVKVFHGADSDIEWLQRDFGLYVVNLF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QASR L L R+SL++LL HFC V+++K YQ ADWRVRPLPDEM++YAR DTHYLLYI
Sbjct: 388 DTHQASRALNLARHSLDHLLKHFCSVDSDKRYQLADWRVRPLPDEMVQYARTDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD ++++L N P L V+ +S + + Y K + +E SYL + Q
Sbjct: 448 YDCVRVQLLDF-----NHGQPGLLQSVWNKSRSISLKKYVKPIYTEESYLELQRKQKKSF 502
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N QQL L WRD +AR +DESTGYVLP +I+I+++LP
Sbjct: 503 NTQQLTAFRLLFAWRDKLARQEDESTGYVLPTHMMIKISEELP 545
>gi|405972152|gb|EKC36938.1| Exosome component 10 [Crassostrea gigas]
Length = 826
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/260 (46%), Positives = 167/260 (64%), Gaps = 16/260 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST T+DF++DTL LR + P L E+F P KV HGAD DI WLQRD G+Y+ NMF
Sbjct: 294 MQISTATDDFLIDTLALRNDLSP-LNEIFTHPAVVKVFHGADSDIDWLQRDLGLYVVNMF 352
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL R SL +L+ H+C V +K+YQ ADWR+RPLP E+++YAREDTHYL YI
Sbjct: 353 DTGQAARVLNHSRFSLAHLMEHYCDVITDKQYQLADWRIRPLPAELMKYAREDTHYLTYI 412
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y MK +L + + +N L V +RS ++C ++Y+K++ E+SYL +Y N+
Sbjct: 413 YQRMKQELLARGNDQKNL---LLSVLQRSTEICAKVYKKQVFKEDSYLELYRKSKKVFNS 469
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL-----------RR 229
+QL + L +WRD +AR +DESTGYVLPN +++IA LP + R+
Sbjct: 470 RQLQALQKLYQWRDKLARQEDESTGYVLPNHMILQIADILPREQQGIFACCNPIPPLVRQ 529
Query: 230 LLKSKHSYI-ERYMGPVLSI 248
L HS+I E P+L +
Sbjct: 530 FLPEIHSFILEAREAPLLKV 549
>gi|440797552|gb|ELR18636.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 929
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 150/227 (66%), Gaps = 4/227 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL LR + L F D KV HG+D DI+WLQRDFG+Y+ NMF
Sbjct: 299 MQISTRTEDFIVDTLALREHMH-LLSSSFHDANIVKVFHGSDSDIMWLQRDFGLYVINMF 357
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA RVL+ SL YLL H CGV A+K+YQ ADWR+RPLP+EML+YAREDTHYLL+I
Sbjct: 358 DTGQACRVLEYPSFSLAYLLRHHCGVLADKKYQLADWRIRPLPEEMLKYAREDTHYLLFI 417
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD ++ +L S N + V RS ++C YEK L + S+L +Y N
Sbjct: 418 YDKLRNELIGRANMSNNL---ILAVLNRSRELCLLQYEKPLWTPTSHLSLYNRFNYVFNE 474
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
QQ+ V A + +WRD +AR +DES YVLPN L IA+ +PT+ L
Sbjct: 475 QQMRVFAAVYKWRDTVAREEDESYRYVLPNHMLFHIAELVPTSVPAL 521
>gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis]
Length = 673
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus]
Length = 885
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 154/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL+LR + L E +P KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRMEDFIIDTLELRSDMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWD---RGNSQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLA L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis]
Length = 329
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTRTEDF++D L+LR + L E F DP KV+HGAD D+ WLQRDFG+YL N+F
Sbjct: 113 VQISTRTEDFILDALELRGDLYV-LNETFTDPAIIKVLHGADSDVEWLQRDFGLYLVNVF 171
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R L L R+SL++LL +C V+ANK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 172 DTHQAARQLSLGRHSLDHLLKLYCNVDANKQYQLADWRIRPLPEEMLNYARDDTHYLLYI 231
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD ++ +L E L V++RS D+C + Y K + +ENSYL +Y Q LN
Sbjct: 232 YDRVRTELWERGNELP---AQLQVVWQRSRDICLKKYLKPIFTENSYLELYRKQKKHLNT 288
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQ+ L WRD +AR +DESTGYVLPN L++I+++LP
Sbjct: 289 QQMTAFKLLFAWRDKMARQEDESTGYVLPNHMLLKISEELP 329
>gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus]
Length = 860
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 154/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL+LR + L E +P KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRMEDFIIDTLELRSDMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELWD---RGNSQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLA L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens]
Length = 679
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|339717671|pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717672|pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717673|pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717674|pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 151 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 209
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 210 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 269
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 270 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 326
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 327 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 367
>gi|241600516|ref|XP_002405158.1| exosome component, putative [Ixodes scapularis]
gi|215502468|gb|EEC11962.1| exosome component, putative [Ixodes scapularis]
Length = 518
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 158/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+ D+VVDTL LR ++ L EVF +P KV+HGAD D++WLQRDFG+YL +F
Sbjct: 53 MQISTRSSDYVVDTLALRHELH-LLNEVFANPKIIKVLHGADMDVLWLQRDFGLYLVGLF 111
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL + SL +LL H+C ++ +K++Q ADWR+RPLP EM++YAREDTHYLL++
Sbjct: 112 DTGQAARVLGMAHLSLAFLLRHYCHLDTDKKFQLADWRIRPLPLEMIKYAREDTHYLLHV 171
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+M+ L + + N L V++RS VC + YEK L +E+SYL +Y N+
Sbjct: 172 YDLMRRDLLAKGNQLNNL---LHSVFQRSKQVCLKRYEKPLYTEDSYLELYRKSKKAFNS 228
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L WRD I+R +DESTGYVLPN +++I++ LP
Sbjct: 229 KQLYALRHLYSWRDRISRLEDESTGYVLPNHMILQISEILP 269
>gi|384247138|gb|EIE20625.1| hypothetical protein COCSUDRAFT_18228, partial [Coccomyxa
subellipsoidea C-169]
Length = 344
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 153/233 (65%), Gaps = 2/233 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STRT D++VD + LR +GP+L +F D KV+HG+D DIVWLQRDFGIY+ ++F
Sbjct: 106 MQVSTRTADYLVDVIALRSHIGPHLAPMFADTKIVKVLHGSDSDIVWLQRDFGIYVASLF 165
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL L YLL HFC V A+K +Q ADWRVRPL E L YAR DTHYLLYI
Sbjct: 166 DTGQAARVLAYPSAGLAYLLSHFCSVKADKRWQLADWRVRPLSAEALHYARLDTHYLLYI 225
Query: 121 YDIMKIKLSSMPKE--SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD +K+ + +E T + V +RS +C Q YEKEL SE SYL Y L
Sbjct: 226 YDCLKVLPDHLQEEVPERGPATCMGVVLERSRLLCLQRYEKELFSETSYLDAYRRCQEPL 285
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
+QLAV AGL WRD AR DESTG+VL L+++AK+ P+ A LR +L
Sbjct: 286 TREQLAVFAGLYAWRDRTARERDESTGFVLSRALLVKLAKRAPSNARDLRAVL 338
>gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis]
Length = 1092
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/290 (43%), Positives = 174/290 (60%), Gaps = 23/290 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR+ED V+DTL LR VGP L +F DP KV+HGAD D+ WLQRDFG++L N+F
Sbjct: 289 MQLSTRSEDLVIDTLALRAHVGPALAPIFADPGVVKVLHGADSDVAWLQRDFGLFLANLF 348
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL + + L +LL +CG A+K +Q ADWRVRPL EML YAR DTH+LLY
Sbjct: 349 DTGQAARVLGMRGHGLAHLLDFYCGFKADKRFQLADWRVRPLTPEMLHYARSDTHHLLYC 408
Query: 121 YDIMKIKLS----SMPKE--------------SENSDTPLTEVYKRSYDVCRQLYEKELL 162
YD +K L+ S+P+ + + L V +RS +C Y+KE
Sbjct: 409 YDKLKAALAEAGDSVPEHLAVELPPAASTAAAAAGAGAALATVLERSRRLCLLQYDKERY 468
Query: 163 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
S ++L + A L +QL+V L EWRD +AR DESTGY+LP L+++A+ +P
Sbjct: 469 SPLAFLDLASKLNASLTDEQLSVFGALYEWRDSVARQLDESTGYLLPRAQLLKLAQAMPR 528
Query: 223 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 272
T +L + L I R + VL+ I+ + Q EV+A + E+R +
Sbjct: 529 TVLELHKALGRSSPVISRQVAEVLAAIQAARQP----EVVA-AVGEQRQQ 573
>gi|290982318|ref|XP_002673877.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
gruberi]
gi|284087464|gb|EFC41133.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
gruberi]
Length = 956
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 121/257 (47%), Positives = 164/257 (63%), Gaps = 3/257 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+EDF++DTL+LR + L F P KVMHG+D DI+WLQRDF IY N+F
Sbjct: 383 MQISTRSEDFLIDTLELRQHMH-ILNSSFTHPKIVKVMHGSDCDILWLQRDFAIYCVNLF 441
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA R L L SL YLL H+CG++A+K+YQ ADWRVRPLP EM++YAREDTHYLLYI
Sbjct: 442 DTGQACRTLALPGCSLAYLLKHYCGIDADKKYQLADWRVRPLPSEMVKYAREDTHYLLYI 501
Query: 121 YDIMKIKL-SSMPKESENSDTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD ++ + ++ P S S + EV RS ++C + YEKEL SE SYL +
Sbjct: 502 YDRLRQDIFNTKPNTSTVSGFERMEEVLVRSKELCMRRYEKELFSETSYLSLIKFSRGCT 561
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
+ V+ L +WRD +AR DDES YVLP+ ++ IA++ PT ++L +
Sbjct: 562 ASISENVIRVLFKWRDTVARKDDESIRYVLPDHMILSIAQEAPTEVSQLLSCCNPVPKLV 621
Query: 239 ERYMGPVLSIIKNSMQN 255
R ++ +I ++Q+
Sbjct: 622 RRDAKIIVDLITKALQS 638
>gi|221121078|ref|XP_002157951.1| PREDICTED: exosome component 10-like [Hydra magnipapillata]
Length = 758
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 150/221 (67%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL LR ++ + E+F DP KVMHGAD DI WLQRDFG+Y+ NMF
Sbjct: 282 MQISTRFEDFIIDTLALREEMYK-INEIFSDPNILKVMHGADSDIGWLQRDFGVYVVNMF 340
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+R L +R SL YLL +C V+A K+YQ ADWR+RP+P EM+ YA+EDTHYLLY+
Sbjct: 341 DTGQAARTLHEDRFSLAYLLSKYCNVDAQKQYQLADWRIRPIPKEMILYAQEDTHYLLYV 400
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YDI++ +L + ++N L VY +S +C +Y+K L + +SY+ Y LN
Sbjct: 401 YDILRNQLLNKGNANKNL---LKSVYSKSTSICATMYQKPLFNNDSYIATYEKYRGRLNP 457
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L EWRD AR +DES Y LPN L +IA+ LP
Sbjct: 458 QQLECFRLLFEWRDKTAREEDESIVYTLPNHMLFQIAENLP 498
>gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500]
Length = 1011
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/256 (47%), Positives = 166/256 (64%), Gaps = 5/256 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STRTEDF+VDTL LR + L F +P KV+HG++ D+ WLQRDFGIY+ NMF
Sbjct: 315 MQVSTRTEDFIVDTLVLRSHMK-MLNVPFTNPKIVKVLHGSESDVKWLQRDFGIYIVNMF 373
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASR+L+ SL +LL +CGV+ANK++Q ADWR+RP+P+EM++YAREDTHYLLYI
Sbjct: 374 DTGQASRILEYPSASLAFLLRFYCGVDANKKFQLADWRIRPVPEEMIKYAREDTHYLLYI 433
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD ++ +L K + N L EV +RS ++C YEK++L ENS+ G N
Sbjct: 434 YDRLRNELVLKGKSTNNY---LMEVLRRSKEICLIKYEKDILDENSHAEYLKKNGITYNP 490
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QL + L WR+ +AR DDES Y+LPN + I ++ PTT L YI++
Sbjct: 491 AQLKIFRLLYNWREKVARDDDESVRYILPNSMMQLIVEKQPTTITDLLACCTPIPPYIKQ 550
Query: 241 YMGPVLS-IIKNSMQN 255
Y +L I+++ + N
Sbjct: 551 YGHELLQDILRSRISN 566
>gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio]
Length = 899
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 169/268 (63%), Gaps = 5/268 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL+LR ++ L E F DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 327 MQISTREEDFIIDTLELRSEMY-ILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 385
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L L RNSL++LL +C V+++K YQ ADWR+RPLPDEML+YA+ DTHYLLY+
Sbjct: 386 DTHHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYV 445
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD ++ L T + +V+ +S D+ + Y K + +E+SY+ +Y Q N
Sbjct: 446 YDRVRADLFD---GGNGQATLIQQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKKSFNT 502
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQLA + WRD +AR +DESTGY+LPN +++IA +LP + + +
Sbjct: 503 QQLAAFRLMYAWRDKLAREEDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPPLVRQ 562
Query: 241 YMGPVLSIIKNSMQN-AANFEVIAQKLK 267
+ + +IK + + EV+AQK K
Sbjct: 563 QINELHQLIKQARETPLLKAEVVAQKRK 590
>gi|417405124|gb|JAA49287.1| Putative exosome 3'-5' exoribonuclease complex subunit pm/scl-100
rrp6 [Desmodus rotundus]
Length = 888
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 152/221 (68%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDFV+DTL+LR + L E P KV HGAD D+ WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFVIDTLELRSDMY-ILNESLTHPAIVKVFHGADSDVEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+ +L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAACLLNLGRHSLDHLLKLYCDVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFKLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|339717675|pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
gi|339717676|pdb|3SAH|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
Length = 428
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 154/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 151 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 209
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML AR+DTHYLLYI
Sbjct: 210 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSAARDDTHYLLYI 269
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 270 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 326
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 327 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 367
>gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020, partial [Trichoplax
adhaerens]
Length = 535
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 163/258 (63%), Gaps = 5/258 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTL LR ++ L EVF DP K++HGAD DI+WLQRDF IY+ NMF
Sbjct: 280 MQISTRDADYIVDTLALRSELWT-LNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVNMF 338
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+R+L+ R SL YLL +C V ANK Q ADWR+RPLP EM++YAREDTHYLLYI
Sbjct: 339 DTGQAARLLQFPRFSLSYLLLKYCNVTANKGLQLADWRIRPLPQEMVQYAREDTHYLLYI 398
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+D++ +L + + S L + RS +C + YEK + ++ SYL++ N
Sbjct: 399 FDVLTNELMN----ASTSVDLLKSNFDRSKKICLRTYEKPVFNKKSYLNLLYKHKGRFNH 454
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQ A L WRD +AR +DES +VLPN L++IA+ LP + + + +
Sbjct: 455 QQNYAFAKLYSWRDSVARDNDESANFVLPNHMLLQIAENLPREPQGILACCNPIPTLVRQ 514
Query: 241 YMGPVLSIIKNSMQNAAN 258
Y+G + IIK + + + N
Sbjct: 515 YIGDIHQIIKKARERSIN 532
>gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis]
Length = 550
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/223 (52%), Positives = 151/223 (67%), Gaps = 8/223 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL+LR ++ L E F DP KV HGAD DI WLQRDFG+Y+ +F
Sbjct: 296 MQISTREEDFIIDTLELRSEMY-ILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVRLF 354
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QASR L L R+SL++LL HFC V ++K YQ ADWR+RPLP+EM++YAR DTHYLLYI
Sbjct: 355 DTHQASRALNLARHSLDHLLTHFCNVASDKRYQLADWRIRPLPEEMVQYARADTHYLLYI 414
Query: 121 YDIMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
YD ++ +L N P L V+ RS D+ + Y K + +E SYL + Q
Sbjct: 415 YDCVRAQLLDF-----NHGQPGLLKSVWDRSRDISLKKYMKPIFTEESYLELQRKQKKSF 469
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N QQLA L WRD +AR +DESTGYVLP +I+I+++LP
Sbjct: 470 NTQQLAAFRLLFAWRDKLARQEDESTGYVLPTHMMIKISEELP 512
>gi|405969148|gb|EKC34144.1| Exosome component 10, partial [Crassostrea gigas]
Length = 309
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 154/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST T+DF++DTL LR + P L E+F P KV HGAD DI WLQRD G+Y+ NMF
Sbjct: 52 MQISTATDDFLIDTLALRNDLSP-LNEIFTHPAVVKVFHGADSDIDWLQRDLGLYVVNMF 110
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL R SL +L+ H+C V +K+YQ ADWR+RPLP E+++YAREDTHYL YI
Sbjct: 111 DTGQAARVLNHSRFSLAHLMEHYCDVITDKQYQLADWRIRPLPAELMKYAREDTHYLTYI 170
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y MK +L + + +N L V +RS ++C ++Y+K++ E+SYL +Y N+
Sbjct: 171 YQRMKQELLARGNDQKNL---LLSVLQRSTEICAKVYKKQVFKEDSYLELYRKSKKVFNS 227
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L +WRD +AR +DESTGYVLPN +++IA LP
Sbjct: 228 RQLQALQKLYQWRDKLARQEDESTGYVLPNHMILQIADILP 268
>gi|410899603|ref|XP_003963286.1| PREDICTED: exosome component 10-like [Takifugu rubripes]
Length = 885
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 149/221 (67%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL++R ++ L E F DP KV HGAD DI WLQRDFG+Y+ +F
Sbjct: 326 MQISTREEDFIIDTLEVRSEMY-ILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVRLF 384
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QASR L L R+SL++LL HFC V ++K YQ ADWR+RPLP+EM++YAR DTHYLLYI
Sbjct: 385 DTHQASRALNLARHSLDHLLTHFCNVASDKRYQLADWRIRPLPEEMVQYARSDTHYLLYI 444
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD ++ +L + L V+ RS D+ + Y K + +E SYL + Q N
Sbjct: 445 YDRVRAQLLDF---NHGQAGLLKSVWDRSRDISLKKYMKPIFTEESYLELQRKQKKSFNT 501
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLA L WRD +AR +DESTGY LP +I+I+++LP
Sbjct: 502 QQLAAFRLLFAWRDKLARQEDESTGYALPTHMMIKISEELP 542
>gi|403344491|gb|EJY71591.1| hypothetical protein OXYTRI_07421 [Oxytricha trifallax]
Length = 967
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 161/236 (68%), Gaps = 4/236 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS RT D+VVDTLKLR +GP L +F DP KV+HGAD D+ WLQ+DF +Y+ NMF
Sbjct: 325 MQISNRTHDYVVDTLKLRQSLGPKLLPLFTDPQITKVLHGADYDVEWLQKDFSLYVVNMF 384
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+R+L+ L +LL +CGV +K+YQ ADWR RP+P+EML+YAREDTHYLLY+
Sbjct: 385 DTGQAARILQKPGFGLAFLLQSYCGVLTDKKYQLADWRQRPIPEEMLKYAREDTHYLLYV 444
Query: 121 YDIMKIKLSSMPKESENSDTPLT---EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 177
YD+M+ +L + +N+ PL+ +V +S +C++ YEK ++ + +Y I G
Sbjct: 445 YDLMRKELIQNAVK-QNASNPLSMYRQVLIKSNQLCQKQYEKPIVKDYNYYMIVGRNKTI 503
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 233
+ +Q++V+ L + RD IAR +DES+ Y +PN + ++ K LPTT +++ +S
Sbjct: 504 QSMKQISVLKMLVKLRDYIARLEDESSQYAIPNHIMFQMGKDLPTTRNQIKDCCRS 559
>gi|346467363|gb|AEO33526.1| hypothetical protein [Amblyomma maculatum]
Length = 656
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 149/221 (67%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+ D+VVDTLKLR ++ L EVF +P KV+HGAD D++WLQRDFG+YL +F
Sbjct: 78 MQISTRSHDYVVDTLKLRHELQ-VLNEVFANPKIIKVLHGADMDVLWLQRDFGLYLVGLF 136
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL L SL +LL H+C V A+K++Q ADWR+RPLP M+ YAR DTHYLLYI
Sbjct: 137 DTGQAARVLGLAHFSLAFLLRHYCRVEADKQFQLADWRIRPLPAVMIHYARSDTHYLLYI 196
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D +K S + S +D L V+ RS V + YEK +E SYL +Y N
Sbjct: 197 MDCLK---SDLADRSNKNDNLLRSVFDRSKQVALKRYEKPSYNEQSYLELYRKSRKTFNT 253
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L WRD IAR +DESTGYVLP ++EI++ LP
Sbjct: 254 RQLHALRHLYAWRDHIARVEDESTGYVLPKHMILEISEILP 294
>gi|427793373|gb|JAA62138.1| Putative exosome 3'-5' exoribonuclease complex subunit pm/scl-100
rrp6, partial [Rhipicephalus pulchellus]
Length = 911
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 150/221 (67%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+RT+D++VDTL LR ++ L EVF DP KV HGAD D++WLQRDFG+YL +F
Sbjct: 314 MQISSRTQDYIVDTLALRHELQ-MLNEVFADPKILKVFHGADMDVLWLQRDFGLYLVGLF 372
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA++VL L SL +LL H+C + A+K++Q ADWR+RPLP EM+ YA+ DTHYLLYI
Sbjct: 373 DTGQAAKVLGLAHFSLAFLLKHYCQIEADKQFQLADWRIRPLPPEMVSYAQSDTHYLLYI 432
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D MK L+ E++N L V+ RS V + YEK E SY+ +Y N+
Sbjct: 433 MDCMKRDLADRSNENDNL---LRSVFDRSKQVALRCYEKPSYHEQSYMELYRKSRKTFNS 489
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L WRD AR +DESTGYVLPN ++EI++ LP
Sbjct: 490 RQLHALRHLYSWRDRTARNEDESTGYVLPNHMILEISEILP 530
>gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar]
gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar]
Length = 885
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/222 (51%), Positives = 150/222 (67%), Gaps = 6/222 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL+LR ++ L E F DP KV HGAD DI WLQ+D G+Y+ NMF
Sbjct: 328 MQISTRDEDFIIDTLELRSELY-ILNEAFTDPAIVKVFHGADSDIEWLQKDLGLYIVNMF 386
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QASR L L R+SL++LL FC V+++K YQ ADWR+RPLPDEM +YAR DTHYLLY+
Sbjct: 387 DTHQASRTLNLGRHSLDHLLKLFCNVDSDKRYQLADWRIRPLPDEMFQYARADTHYLLYV 446
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
YD +++ L E N L + V+ +S D+ + Y K L +++SY+ + Q N
Sbjct: 447 YDRLRVDLW----EVGNGQPALLQMVWHKSKDISLKKYMKPLFTDDSYMDLLRKQKKVFN 502
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD +AR +DESTGYVLPN +I+I+ LP
Sbjct: 503 TQQLTAFRLLYGWRDKLARQEDESTGYVLPNHMMIKISDILP 544
>gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
Length = 1045
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 153/230 (66%), Gaps = 4/230 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL LR + L V +P KV+HG+D DI WLQRDFGIY+ NMF
Sbjct: 292 MQISTRGEDFIIDTLALRSHIH-MLNNVTTNPAIVKVLHGSDSDIKWLQRDFGIYIVNMF 350
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL+ SL +LL +FC V+ANK+YQ ADWR+R +P+EM++YAREDTHYLLYI
Sbjct: 351 DTGQASRVLEYPSASLAFLLKYFCAVDANKKYQLADWRIRKIPEEMIKYAREDTHYLLYI 410
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD ++ +L + K S N L EV +RS ++ YEKE+L +N+++ N
Sbjct: 411 YDRLRNELINKGKGSNNL---LLEVLRRSRELALLKYEKEILDDNTHIQFAKKLNLQYNP 467
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
QL V+ + WR+ +AR +DES YVLPN+ + I + P T +L L
Sbjct: 468 VQLNVLKVIYHWREGLAREEDESVRYVLPNQMMFSIIENQPVTVQELIAL 517
>gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona
intestinalis]
Length = 647
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 156/229 (68%), Gaps = 11/229 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STRT+D++VDT+ LR ++ L +VF +P KV HGAD DI+WLQRDFGIY+ N+F
Sbjct: 105 MQLSTRTKDYIVDTIALRAELN-ILNQVFANPNIIKVFHGADSDIIWLQRDFGIYVVNLF 163
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+R L L+R+SL+YLL H+C V A+K+YQ ADWR+RPLP EML YA+ DTHYLLY+
Sbjct: 164 DTGQAARALGLQRHSLDYLLTHYCNVQADKKYQLADWRIRPLPKEMLLYAQGDTHYLLYV 223
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI---YGLQGA- 176
YD+M++ L L +V +S D+C YEK + ++ S+L + + +G
Sbjct: 224 YDMMRLDLVKT-----GDPGLLHKVIDKSRDICCLKYEKPITNDTSHLVLLEKHKRRGGK 278
Query: 177 -GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 224
QQ+ + + WRD +AR +DES GYVLPN L++IA+ LP A
Sbjct: 279 KDFRPQQIEALRLIFAWRDGLARQEDESCGYVLPNHMLLQIAEILPREA 327
>gi|325183710|emb|CCA18169.1| exosome complex exonuclease RRP6like protein putativ [Albugo
laibachii Nc14]
Length = 770
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 135/286 (47%), Positives = 177/286 (61%), Gaps = 25/286 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST DF+VDTL LR + L +VF DP K KV+HGAD DI+WLQRD G+Y+ NMF
Sbjct: 263 MQISTHNHDFLVDTLALRSSLQ-LLNQVFCDPQKLKVLHGADMDILWLQRDLGLYVVNMF 321
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG+A+RVL+L R SL YLL C + A+K+YQ ADWR RPL +EM RYAREDT YLL+I
Sbjct: 322 DTGRAARVLQLPRFSLAYLLKKCCDIEADKQYQLADWRQRPLTEEMTRYAREDTRYLLFI 381
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN--SYLHIYGLQGAGL 178
Y MK +L + K N+ + EV+K S +C Q+Y K +SE+ + L AG+
Sbjct: 382 YRKMKEEL--LLKSDSNAANLVREVHKHSNQLCLQVYSKPQVSEDDCTALVTKLTASAGV 439
Query: 179 NA---QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 235
A Q V L WRD +AR DES+ YVLPN+ L++IA+ LP+ + +L RL
Sbjct: 440 TAFSELQQRVFRRLYFWRDAVARETDESSMYVLPNQLLLQIARHLPSKSEQLLRL----- 494
Query: 236 SYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVL 281
R + P L +Q A FE++ L E+ ME SEET+ +
Sbjct: 495 ----RNVIPPL------VQKHA-FEIVQLILTEKEME-QSEETKAV 528
>gi|345478840|ref|XP_001599044.2| PREDICTED: exosome component 10 [Nasonia vitripennis]
Length = 1163
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 148/221 (66%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST+ D+++DTL LR ++ L E+F P+ KV HGAD DI+WLQRD G+Y+ NMF
Sbjct: 677 MQISTKDTDYLIDTLTLRSELH-VLNEIFTKPSILKVFHGADSDILWLQRDLGLYIVNMF 735
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++ L L SL YLL C ++ANK +Q ADWR+RPLP+E+++YAREDTHYLLYI
Sbjct: 736 DTYQAAKQLGLPFLSLSYLLKTHCEISANKHFQLADWRIRPLPEELMKYAREDTHYLLYI 795
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
DI+ +++ + L VY RS D+C+Q Y K + +ENSY +Y N
Sbjct: 796 KDILS---NALIDSANGQSNILKAVYTRSTDICKQTYTKPVWTENSYKAMYRKSQKMFNN 852
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L +WRD ARA+D+ST YVLPN L+ IA+ LP
Sbjct: 853 RQLFALQELHKWRDETARAEDDSTNYVLPNHMLLNIAETLP 893
>gi|340380967|ref|XP_003388993.1| PREDICTED: exosome component 10-like [Amphimedon queenslandica]
Length = 724
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 151/222 (68%), Gaps = 5/222 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STRT D+++DTL LR + L EVF +P KVMHGAD DI WLQRDFG+Y+ N+F
Sbjct: 272 MQVSTRTTDYIIDTLSLRPHLH-LLNEVFTNPNIIKVMHGADWDIPWLQRDFGVYIVNLF 330
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA R L L R SL +LL + CGV ANK+YQ ADWR+RPLP++M++YAREDTHYLLY+
Sbjct: 331 DTGQACRTLGLPRYSLAFLLSYCCGVTANKQYQLADWRIRPLPEDMIKYAREDTHYLLYV 390
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY-GLQGAGLN 179
YD ++ + + + S + + V K S ++ ++Y+K +++ SYL + L+
Sbjct: 391 YDRLR---NELIRRSNSQSNLINAVLKNSKEISLKVYKKPAINDESYLKLCKKFNKRNLS 447
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L +WR +AR +DES GYVLPN L ++ + LP
Sbjct: 448 HKQLYALKCLYQWRFNVARREDESPGYVLPNHMLFQLCEILP 489
>gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
Length = 1195
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 162/246 (65%), Gaps = 17/246 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+EDF++DTL LR + L +VF +P+ KV+HG+D DI WLQRDFG+Y+ NMF
Sbjct: 287 MQISTRSEDFLIDTLLLRSHIH-MLNQVFTNPSIVKVLHGSDSDIKWLQRDFGVYIVNMF 345
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASR+L+ SL +LL +C ++ANK+YQ ADWR+R LP+EM++YAREDTHYLLYI
Sbjct: 346 DTGQASRILEYPSASLAFLLKFYCAIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYI 405
Query: 121 YDIMKIKLSSMPKES----------------ENSDTPLTEVYKRSYDVCRQLYEKELLSE 164
YD ++ +L S ++ + ++ L EV +RS ++ YEK++L +
Sbjct: 406 YDRLRNELISKGNKNLGSSGTSTNTSTSTTTQLNNHLLLEVLRRSRELSLLRYEKDILDD 465
Query: 165 NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 224
NS+++ + QL V+ L WR+ +AR +DES Y+LPN+ ++ I ++ PT+
Sbjct: 466 NSHINFAKKLNLQYSPTQLNVLKVLYHWREGLARDEDESVRYILPNQMMLTIVERQPTSV 525
Query: 225 AKLRRL 230
+L L
Sbjct: 526 QELLTL 531
>gi|347967581|ref|XP_003436085.1| AGAP002300-PB [Anopheles gambiae str. PEST]
gi|333468394|gb|EGK96928.1| AGAP002300-PB [Anopheles gambiae str. PEST]
Length = 988
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 150/221 (67%), Gaps = 7/221 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STRT+D++VD L LR ++ L EVF DP K KV+HG+ DI WLQRD G+YL NMF
Sbjct: 307 MQLSTRTKDYIVDALALRDELH-VLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMF 365
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG+A+RVL+ R L++LL H+C ++ +K +Q ADWR+RP+P+ + YAR+DTHYLLYI
Sbjct: 366 DTGEAARVLQFSRIGLQFLLKHYCNIDTDKAFQLADWRIRPIPENFIEYARKDTHYLLYI 425
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ +L E ++ L VY +S +C+Q Y+K ++E++ ++IY +
Sbjct: 426 YDRMRNEL------LEKGESLLQTVYDKSTFMCKQRYQKPTMNEDTVMNIYRRSRYVFDH 479
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+ + WRD IAR +DES GYVLP ++IA +LP
Sbjct: 480 RQMYAFREVLYWRDQIARLEDESPGYVLPQHMALDIASKLP 520
>gi|347967577|ref|XP_312669.5| AGAP002300-PA [Anopheles gambiae str. PEST]
gi|333468393|gb|EAA07463.5| AGAP002300-PA [Anopheles gambiae str. PEST]
Length = 992
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 150/221 (67%), Gaps = 7/221 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STRT+D++VD L LR ++ L EVF DP K KV+HG+ DI WLQRD G+YL NMF
Sbjct: 311 MQLSTRTKDYIVDALALRDELH-VLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMF 369
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG+A+RVL+ R L++LL H+C ++ +K +Q ADWR+RP+P+ + YAR+DTHYLLYI
Sbjct: 370 DTGEAARVLQFSRIGLQFLLKHYCNIDTDKAFQLADWRIRPIPENFIEYARKDTHYLLYI 429
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ +L E ++ L VY +S +C+Q Y+K ++E++ ++IY +
Sbjct: 430 YDRMRNEL------LEKGESLLQTVYDKSTFMCKQRYQKPTMNEDTVMNIYRRSRYVFDH 483
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+ + WRD IAR +DES GYVLP ++IA +LP
Sbjct: 484 RQMYAFREVLYWRDQIARLEDESPGYVLPQHMALDIASKLP 524
>gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum]
Length = 739
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 115/270 (42%), Positives = 167/270 (61%), Gaps = 7/270 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D+++DTL LR ++ L E+F +P KV HGAD DI WLQRD G+Y+ NMF
Sbjct: 250 MQISTRNADYIIDTLYLRDKLH-VLNEIFTNPAVVKVFHGADSDIPWLQRDLGLYVVNMF 308
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+++L R LE+LL H+C V+A+K +Q DWR RPL E + YAR DTHYLLY+
Sbjct: 309 DTYQAAKILNFSRKGLEFLLKHYCNVDADKTFQLYDWRTRPLSTEAIFYARCDTHYLLYV 368
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD++K L +M S N + V++RS DVC+ YE +L ++S+L +Y +
Sbjct: 369 YDMIKKDLMAM---STNQCNYIELVFQRSADVCKSRYEVNILRDDSHLSMYKRSKKMFDI 425
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
QQ+ + L WRD +AR DES GY+LPN L++I++ LP + + + +
Sbjct: 426 QQMYALKHLYAWRDKLARELDESPGYILPNHMLLKISEMLPKESFGILACCSPVPPLVRQ 485
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEER 270
+ + I+KN+ + FE A+KL E++
Sbjct: 486 CLHEIHYIVKNAKEQT--FEN-AEKLNEDK 512
>gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
(ISS) [Ostreococcus tauri]
gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
(ISS) [Ostreococcus tauri]
Length = 701
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/254 (46%), Positives = 152/254 (59%), Gaps = 8/254 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +DFVVD L LR V L + F DP KVMHGAD D+ WLQ+DFGI++ +F
Sbjct: 160 MQVSTREKDFVVDVLALRSLVRDALGKAFADPNTLKVMHGADNDVQWLQKDFGIFVSCLF 219
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL+L +L YLL H+CG+ ANK++Q ADWRVRPL EML YAR DTHYLLY+
Sbjct: 220 DTGQAARVLELPSKALAYLLQHYCGIKANKKFQLADWRVRPLTREMLDYARGDTHYLLYV 279
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH--IYGLQGAGL 178
YD +K L++ ENS + +S DVC + Y E SY + L
Sbjct: 280 YDELKKALAA---RGENS---IAATLTQSRDVCLKKYLPPTFDEGSYYEDLLKTNNLTNL 333
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
N QLAV A L +WRD AR DES GYV+P ++ +A P+T L + + I
Sbjct: 334 NDPQLAVYAALFKWRDAAAREADESLGYVMPRELMLRLAIAAPSTKRALMEECRGQVPLI 393
Query: 239 ERYMGPVLSIIKNS 252
++ V +I +
Sbjct: 394 AKHAETVADLISRA 407
>gi|307177174|gb|EFN66407.1| Exosome component 10 [Camponotus floridanus]
Length = 1189
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 147/221 (66%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+++DTL LR ++ L E+F PT K+ HGAD DI+WLQRD +Y+ NMF
Sbjct: 274 MQISTVNTDYLIDTLALRSELHQ-LNEIFTKPTILKIFHGADMDILWLQRDLSLYVVNMF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++ L L SL YLL+ +CG+N NK +Q ADWR+RPLP+E+++YAREDTHYLL+I
Sbjct: 333 DTHQAAKQLNLPYLSLAYLLNKYCGINPNKHFQLADWRIRPLPEELMKYAREDTHYLLHI 392
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D++K +L N L VY R D+C++ Y K + +E S +++Y N
Sbjct: 393 KDMLKNELIETANGKSNI---LKAVYDRCTDLCKRTYVKSIWTEESCMNMYRKSQKSFNN 449
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+ + L +WRD+ AR +D+S GYVLPN L+ IA+ LP
Sbjct: 450 KQMYALLELHKWRDITAREEDDSIGYVLPNHMLLNIAETLP 490
>gi|383849711|ref|XP_003700481.1| PREDICTED: exosome component 10-like [Megachile rotundata]
Length = 1271
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 145/221 (65%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+++DTL LR ++ L E+F PT KV HGAD DI WLQRD +Y+ NMF
Sbjct: 303 MQISTGDADYLIDTLSLRSELHE-LNEIFTKPTILKVFHGADLDIQWLQRDLSLYIVNMF 361
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++ L L SL YLL H+C ++ NK +Q ADWR+RPLP+E+ +YAREDTHYLLYI
Sbjct: 362 DTHQAAKQLNLPYLSLAYLLKHYCNIDPNKHFQLADWRIRPLPEELQKYAREDTHYLLYI 421
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
DI++ +++ + L VY RS D+C++ Y K + +E S + IY N
Sbjct: 422 KDILR---NALIDAANGQINILKSVYDRSTDICKKTYVKPIWTEESCMSIYRKSQKMFNN 478
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L +WRDV AR +D+ST YVLPN L+ IA+ LP
Sbjct: 479 KQLYALIELHKWRDVTAREEDDSTAYVLPNHMLLNIAETLP 519
>gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex]
Length = 834
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 146/221 (66%), Gaps = 5/221 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST + D+++DTL+L Q+ P L EVF +P K+ HGAD DI WLQRDFGIY+ N+F
Sbjct: 274 MQISTSSSDYIIDTLELWDQLQP-LNEVFCNPKIVKIFHGADMDIQWLQRDFGIYVVNLF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+++L + SL +LL H+C V A+K+YQ ADWR+RPLP++M+ YAREDTHYL YI
Sbjct: 333 DTYHAAKLLGFAQLSLSFLLRHYCQVIADKQYQLADWRIRPLPEQMVNYAREDTHYLGYI 392
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y+ MK L K D LT V++ S VC + Y ++ S+L +Y L N
Sbjct: 393 YEKMKKDL----KMKGTGDNLLTAVWQNSRLVCLKRYRIPPITAESHLELYRLSKKIFNE 448
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L WRD IAR +DESTG+VLP L++IA LP
Sbjct: 449 RQLFALKELFAWRDRIAREEDESTGFVLPKHMLLQIADVLP 489
>gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens]
Length = 529
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 108/205 (52%), Positives = 141/205 (68%), Gaps = 4/205 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTG 205
QQL L WRD AR +DES G
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYG 529
>gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis]
Length = 669
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/232 (49%), Positives = 154/232 (66%), Gaps = 11/232 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR D++VDTL LR + L +VF +P KV HGAD+DI WLQRDFG+Y+ N+F
Sbjct: 158 MQLSTRKTDYIVDTLALRANLN-ILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVVNLF 216
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL+L S EYLL H+C V ++K+YQ ADWR RPL +ML+YA+EDTHYLLYI
Sbjct: 217 DTGQAARVLELGL-SREYLLKHYCKVESDKKYQKADWRERPLSKDMLKYAQEDTHYLLYI 275
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
YD+MK+ L E + +V S D+C YEK ++ + S+L + +GAG
Sbjct: 276 YDMMKLDLL----EKAGGVGLMHKVIGNSRDICLLKYEKLIIDDTSHLKLLR-KGAGKIE 330
Query: 178 -LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
Q+L + + WRD +AR DES GY++PN+ L++IAK LP T +R
Sbjct: 331 DWEPQELEALRLIYMWRDELARQKDESCGYIMPNKMLVQIAKTLPQTVQDVR 382
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 111/174 (63%), Gaps = 10/174 (5%)
Query: 59 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
+FDTGQA+R LKL SLEYLL H+C V ++K++Q ADWR RPL +ML+YA++DTHYLL
Sbjct: 430 LFDTGQAARELKLG-CSLEYLLKHYCKVESDKKFQKADWRERPLSKDMLKYAQKDTHYLL 488
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG- 177
YIYD+MK+ L E + +V S D+C YEK ++ + S+ + +GAG
Sbjct: 489 YIYDMMKLDLL----EKAGDAKLMRKVIGNSRDICLLKYEKLIIDDTSHRKLLR-KGAGK 543
Query: 178 ---LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
Q+L + + WRD +AR DES GYVLPN+ L++IAK +P T LR
Sbjct: 544 IEDWEPQELEALRLIYMWRDKLARQMDESCGYVLPNKLLVQIAKTMPQTEQDLR 597
>gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi]
Length = 526
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 149/221 (67%), Gaps = 6/221 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +D++VDTL LR ++ L EVF DP K KV+HGA DI WLQRD G+YL NMF
Sbjct: 250 MQLSTRKKDYIVDTLALRDELH-VLNEVFTDPRKLKVLHGAISDIEWLQRDLGLYLVNMF 308
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG+A+RVL+ R L++LL H+C + +K YQ ADWR+RPLP + YAR+DTHYLLYI
Sbjct: 309 DTGEAARVLQFSRIGLQFLLKHYCNIETDKAYQLADWRMRPLPPAFIEYARKDTHYLLYI 368
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD ++ L + D+ L VY +S +C+Q Y+K +++E+S ++IY +
Sbjct: 369 YDRIRNDLL-----EKGGDSLLQTVYDKSTFLCKQRYQKPIVNEDSIMNIYRRSRYVFDH 423
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+ + + WRD IAR +DES GYVLP ++IA +LP
Sbjct: 424 RQMYALREILYWRDKIARQEDESPGYVLPQHMALDIASKLP 464
>gi|167527362|ref|XP_001748013.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773431|gb|EDQ87070.1| predicted protein [Monosiga brevicollis MX1]
Length = 837
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 145/227 (63%), Gaps = 4/227 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR+ED+++DTL LR + L +F DP KV+HGAD DI+WLQRD +Y+ NMF
Sbjct: 307 MQLSTRSEDYLIDTLALRDDL-KLLNVIFADPAILKVLHGADSDILWLQRDHSLYIVNMF 365
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL R+SL +LL H+C A+K+YQ ADWRVRPL +EML YAR DTH+LLYI
Sbjct: 366 DTGQATRVLNFPRHSLAWLLQHYCNFKADKKYQLADWRVRPLSEEMLHYARCDTHFLLYI 425
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD + +L + E N L VY+RS ++C Q YEK S+ + L
Sbjct: 426 YDRLHSELLAQGNEQANL---LRAVYQRSKELCLQRYEKPFYSQATAEDALNRMSRSLVP 482
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + L WRD +AR +DES YVLP+ L+E+A + PT ++
Sbjct: 483 SAVELFMALHAWRDQVARDEDESPRYVLPDHMLLELASRAPTETGQI 529
>gi|443695610|gb|ELT96477.1| hypothetical protein CAPTEDRAFT_99256, partial [Capitella teleta]
Length = 627
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 144/225 (64%), Gaps = 4/225 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTRT DF+VD L LR + L VF DP KV HGA++DI WLQRD G+Y+ NMF
Sbjct: 273 LQISTRTHDFLVDALALREHLH-LLNNVFTDPGIVKVFHGAEQDIHWLQRDLGVYVVNMF 331
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++ L L R SL +LL +C V +K++Q ADWR+RPLP++++ YAREDTHYLLY+
Sbjct: 332 DTFHAAKALGLPRLSLAHLLTTYCSVKPDKKFQMADWRIRPLPEQLVHYAREDTHYLLYV 391
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+D++K +L E+ N L V S VC+ Y K +LS +S+L I N+
Sbjct: 392 HDLLKNQLLDAGNEAANL---LCSVLDSSTGVCKARYVKPILSSDSHLVIMKKARKWFNS 448
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
QQ+ + + WRD R DDESTGYVLPN ++ IA+ LP A
Sbjct: 449 QQMQALKEMYAWRDGCGRVDDESTGYVLPNHMMLNIAENLPKEPA 493
>gi|157124837|ref|XP_001660547.1| hypothetical protein AaeL_AAEL010007 [Aedes aegypti]
gi|108873835|gb|EAT38060.1| AAEL010007-PA [Aedes aegypti]
Length = 949
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 162/263 (61%), Gaps = 7/263 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR++D+++DTL LR ++ L EVF +P KV+HGA DI WLQRD +Y+ NMF
Sbjct: 312 MQISTRSKDYIIDTLALREELH-ILNEVFTNPKVVKVLHGAISDIEWLQRDLSLYIVNMF 370
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG+A++VL+ R L++LL H+C ++ +K YQ ADWR+RP+P + YAR+DTHYLLYI
Sbjct: 371 DTGEAAKVLEFSRIGLQFLLKHYCNIDTDKAYQLADWRIRPIPHNFIEYARKDTHYLLYI 430
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ +L + + L VY +S +C+Q Y K +++E++ ++IY +
Sbjct: 431 YDRMRNELIA------KGASFLPTVYNKSTYMCKQRYVKPVINEDAVMNIYRRSKHVFDQ 484
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+Q+ + WRD +AR +DES GYVLP ++IA +LP + S + +
Sbjct: 485 RQMYAFREILYWRDKLARQEDESPGYVLPQHMALDIASKLPREMQGIIACCTPVPSLVRQ 544
Query: 241 YMGPVLSIIKNSMQNAANFEVIA 263
++ + II + + + N V A
Sbjct: 545 HLHTIHQIILKAREISLNKSVAA 567
>gi|332024515|gb|EGI64713.1| Exosome component 10 [Acromyrmex echinatior]
Length = 885
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 146/221 (66%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+++DTL LR ++ L E+F P+ KV HGAD DI+WLQRD +Y+ NMF
Sbjct: 305 MQISTIQTDYLIDTLSLRSELYQ-LNEIFTKPSILKVFHGADMDILWLQRDLSLYVVNMF 363
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++ L L SL YLL+ +CG++ NK +Q ADWR+RPLP E+++YAREDTHYLLY+
Sbjct: 364 DTHQAAKQLNLPYLSLAYLLNKYCGIDPNKHFQLADWRIRPLPLELMKYAREDTHYLLYV 423
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D++K +L N L VY +S ++C++ Y K + +E S +++Y N
Sbjct: 424 KDMLKNELIDAANGKSNI---LKAVYDQSTEICKRTYVKPIWTEESCMNMYRKSQKSFNN 480
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+ + L WRD+ AR +D+S GY+LPN L+ IA+ LP
Sbjct: 481 KQIYALLELHRWRDLTARQEDDSIGYILPNHMLLNIAETLP 521
>gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus]
gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus]
Length = 796
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 144/221 (65%), Gaps = 7/221 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRT+D+++DTL LR ++ L EVF D KV+HG+ DI WLQRD +Y+ NMF
Sbjct: 302 MQISTRTKDYIIDTLALREELH-VLNEVFTDTKVVKVLHGSISDIEWLQRDLALYVVNMF 360
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG+A++VL+ R L++LL H+C + +K YQ ADWR+RP+P + YAR+DTHYLLYI
Sbjct: 361 DTGEAAKVLEFSRIGLQFLLKHYCNIETDKAYQLADWRIRPIPKNFIEYARKDTHYLLYI 420
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+ +L E + L VY +S +C+ YEK +++E+S ++IY +
Sbjct: 421 YDRMRNEL------IEKGASFLQTVYNKSTFLCKHRYEKPVINEDSIMNIYHRSKHVFDQ 474
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+ + WRD AR +DES GYVLP ++IA +LP
Sbjct: 475 RQMYAFREILYWRDKTARLEDESAGYVLPQHMALDIASKLP 515
>gi|390345989|ref|XP_001198503.2| PREDICTED: exosome component 10 [Strongylocentrotus purpuratus]
Length = 752
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 139/221 (62%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+VVDTL+LR ++ L + F DP KV HGA+ DI WLQRD G+Y+ NMF
Sbjct: 305 MQISTAEHDYVVDTLELRSELQ-MLNDAFTDPKIVKVFHGANMDIDWLQRDLGLYVVNMF 363
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QASR L +SL LL +C V A+K+YQ ADWR+RPLP+EML YAREDTHYLLYI
Sbjct: 364 DTHQASRSLGFPHHSLASLLSRYCQVEADKQYQLADWRIRPLPEEMLHYAREDTHYLLYI 423
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y MK +L + N L V +S +C Q Y K + + +S++ + N
Sbjct: 424 YHTMKNELIKRGNDRRNL---LRAVLDQSTRICVQRYNKPIFTNDSHVTAFQKNRKIFNK 480
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+ L WRD +AR +DESTGY+LP L +IA+ LP
Sbjct: 481 KQMHAFKKLFAWRDSLARQEDESTGYILPMHMLFQIAEILP 521
>gi|301119505|ref|XP_002907480.1| exosome complex exonuclease RRP6-like protein [Phytophthora
infestans T30-4]
gi|262105992|gb|EEY64044.1| exosome complex exonuclease RRP6-like protein [Phytophthora
infestans T30-4]
Length = 1465
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 177/286 (61%), Gaps = 27/286 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST EDF+VDTL LR ++ L +VF DP K KV+HG+D DI+WLQRD G+Y+ N+F
Sbjct: 287 MQISTAQEDFLVDTLALRGKLQT-LNQVFCDPEKVKVLHGSDMDILWLQRDLGLYIVNLF 345
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG+A+R+L+ R SL Y+L C ++A+K+YQ ADWR RPL M++YAREDT YLL+I
Sbjct: 346 DTGRAARLLQYPRFSLAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFI 405
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-YGLQGA--- 176
YD +K +L + +++ ++ L + + S +C Q+YEK +E L + L+G
Sbjct: 406 YDRLKKEL--LQAGAKSRESLLFQTLQNSSKLCLQVYEKPQPTEEDALAVGEKLKGTVYL 463
Query: 177 -GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 235
L+A Q V+ L WRD +AR +DES YV+PN L+++ K LP + L R+
Sbjct: 464 RDLSALQKRVIVALYLWRDRVARQEDESVAYVMPNHVLMKLTKHLPVRSDDLFRVCH--- 520
Query: 236 SYIERYMGPV-LSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV 280
PV L I K+++Q I + + E+ ++A+EET+
Sbjct: 521 --------PVPLLIRKHALQ-------ITKMIVAEKTKLAAEETKT 551
>gi|384501951|gb|EIE92442.1| hypothetical protein RO3G_16964 [Rhizopus delemar RA 99-880]
Length = 599
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 148/231 (64%), Gaps = 10/231 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +DF++DTL+LR ++ L E F DPT KV+HGAD D++WLQRDFG+YL N+F
Sbjct: 271 MQLSTRNQDFIIDTLELRDKLWR-LNEYFADPTIVKVLHGADSDVIWLQRDFGLYLVNLF 329
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ++VL+ + L YLL +C +A+K+YQ ADWR+RPLP EML YAR DTH+LLYI
Sbjct: 330 DTYFPTKVLEFPHHGLAYLLKRYCNYDADKKYQLADWRIRPLPQEMLMYARADTHFLLYI 389
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA---- 176
YD ++ +L S N + +RS +V Q Y+K++ L +G +
Sbjct: 390 YDCLRNELLSASSHGANL---MQNCLQRSNEVALQKYDKDIYDAQGGLGPFGWKNMLSKW 446
Query: 177 --GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
+NAQQLAV + WRD AR +DES YVLPN L + +++PT ++
Sbjct: 447 KYSMNAQQLAVFKAIHAWRDHTARDEDESVRYVLPNHMLFALVERMPTESS 497
>gi|390368374|ref|XP_003731440.1| PREDICTED: exosome component 10-like, partial [Strongylocentrotus
purpuratus]
Length = 776
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 138/221 (62%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+VVDTL+LR ++ L + F DP KV HGA+ D WLQRD G+Y+ NMF
Sbjct: 159 MQISTAEHDYVVDTLELRSELQ-MLNDAFTDPKIVKVFHGANMDFDWLQRDLGLYVVNMF 217
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QASR L +SL LL +C V A+K+YQ ADWR+RPLP+EML YAREDTHYLLYI
Sbjct: 218 DTHQASRSLGFPHHSLASLLSRYCQVEADKQYQLADWRIRPLPEEMLHYAREDTHYLLYI 277
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y MK +L + N L V +S +C Q Y K + + +S++ + N
Sbjct: 278 YHTMKNELIKRGNDRRNL---LRAVLDQSTRICVQRYNKPIFTNDSHVTAFQKNRKIFNK 334
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+ L WRD +AR +DESTGY+LP L +IA+ LP
Sbjct: 335 KQMHAFKKLFAWRDSLARQEDESTGYILPMHMLFQIAEILP 375
>gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299]
gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299]
Length = 332
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 157/259 (60%), Gaps = 8/259 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR DFVVD L+LR + L V DP KV HGAD D+ WLQRDFGIY+ MF
Sbjct: 76 IQVSTRRMDFVVDALELRGLIRDALGPVMADPRVMKVFHGADMDVQWLQRDFGIYVVGMF 135
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL+L L YLL H+C V A+K +Q ADWRVRPL +EM+ YAR DTH+LLY+
Sbjct: 136 DTGQAARVLELPSKGLAYLLDHYCSVKADKRFQLADWRVRPLSEEMISYARGDTHHLLYV 195
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYK----RSYDVCRQLYEKELLSENSYLHIY--GLQ 174
YD ++ +L ++ + + P ++ + RS DVC LYEK + +Y Y
Sbjct: 196 YDRLRQQLDAVGR--GDGSKPFRDLIRTTLDRSRDVCATLYEKPVTHPLTYHADYRKNRD 253
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
L+ +LAV A L WRD RA+DES GYV+P ++ +A++ PT L + +
Sbjct: 254 AGDLDLPRLAVYAALHGWRDERCRAEDESIGYVMPRALMLRLAREAPTNPRALLAVTRGD 313
Query: 235 HSYIERYMGPVLSIIKNSM 253
+ ++ G ++ II ++
Sbjct: 314 SPLVAKHSGELVDIISRAL 332
>gi|357607504|gb|EHJ65543.1| PM-Scl autoantigen-like protein [Danaus plexippus]
Length = 787
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 143/221 (64%), Gaps = 5/221 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST DF++DTL +R V L F DP K KV HGA+RDIVWLQRDFG+Y+ M
Sbjct: 265 IQISTYEGDFIIDTLAVREHVHK-LNLAFTDPKKLKVFHGAERDIVWLQRDFGVYVVGMI 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R L L SL+ LL +C V+A+K YQ ADWR+RPLPDE+ +YAR DTHYLLY+
Sbjct: 324 DTHQAARALALPGLSLKSLLMRYCRVDADKRYQLADWRIRPLPDELRQYARVDTHYLLYM 383
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+ MK L ++ + + L V++ S +C Y KE+++E+S+L +Y N
Sbjct: 384 WRRMKADLLAISSDG----SLLRSVFENSRHICSLTYNKEVINESSHLKLYVRSKKSFNT 439
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+A + L WRD AR DEST Y+LPN L+ +A+ LP
Sbjct: 440 RQMAALRLLYRWRDANARELDESTTYLLPNHMLLALAETLP 480
>gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator]
Length = 804
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 141/221 (63%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+++DTL LR ++ L E+F PT KV HGAD DI WLQRD +Y+ NMF
Sbjct: 215 MQISTVDTDYLIDTLILRSELHQ-LNEIFTKPTILKVFHGADFDIQWLQRDLSLYVVNMF 273
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++ L SL +LL +C +N NK +Q ADWR+RPLP+E+++YAREDTHYLL+I
Sbjct: 274 DTHQAAKQLNFPYLSLAFLLKKYCNINPNKHFQLADWRIRPLPEELMKYAREDTHYLLHI 333
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D++K +L + N L VY S D+C++ Y K + +E S ++ Y N
Sbjct: 334 KDMLKNELIELANGQSNI---LKAVYDMSTDICKRTYVKPIWTEESCMNTYRKSQKMFNN 390
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL L +WRD+ AR +D+S YVLPN L+ IA+ LP
Sbjct: 391 KQLYAFKELHKWRDLTAREEDDSINYVLPNHMLLNIAETLP 431
>gi|348690893|gb|EGZ30707.1| hypothetical protein PHYSODRAFT_553621 [Phytophthora sojae]
Length = 1507
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 158/247 (63%), Gaps = 14/247 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST EDF+VDTL LR ++ L +VF DP K KV+HG+D DI+WLQRD G+Y+ N+F
Sbjct: 290 MQISTAREDFLVDTLALRGKLQT-LNQVFCDPAKVKVLHGSDMDILWLQRDLGLYIVNLF 348
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG+A+R+L+ R SL Y+L C ++A+K+YQ ADWR RPL M++YAREDT YLL+I
Sbjct: 349 DTGRAARLLQYPRFSLAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFI 408
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD +K +L + +++ ++ L + + S +C Q+YEK +E L + +N
Sbjct: 409 YDRLKKEL--LQAGAKSRESFLFQTLQNSSKLCLQVYEKPQPTEEDALALGEKLKGTVNT 466
Query: 181 QQLA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR------ 229
Q+L+ V+ L WRD +AR +DES YV+ N L+++ K LP + +L R
Sbjct: 467 QELSELQKRVIVALYLWRDRVARQEDESVAYVMANHVLMKLTKHLPVRSDELFRACHPVP 526
Query: 230 LLKSKHS 236
LL KH+
Sbjct: 527 LLIRKHA 533
>gi|328776419|ref|XP_003249163.1| PREDICTED: exosome component 10-like [Apis mellifera]
Length = 1271
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 144/221 (65%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST +D+++DTL LR ++ L E+F PT KV HGAD DI WLQRD +Y+ NMF
Sbjct: 300 MQISTEDKDYLIDTLSLRSELHE-LNEIFTKPTILKVFHGADLDIQWLQRDLSLYVVNMF 358
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++ L L SL YLL H+C V+ +K +Q ADWR+RPLP+++++YAREDTHYLLYI
Sbjct: 359 DTHQAAKQLNLPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYI 418
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D++K L + N L VY RS ++C++ Y K + +E + + +Y N
Sbjct: 419 KDMLKNALIDVANGQINI---LKVVYDRSTEICKKTYVKPIWTEENCMTMYRKSQKMFNN 475
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L +WRD AR +D+S YVLPN L+ IA+ LP
Sbjct: 476 KQLYALRELHKWRDDTARIEDDSIAYVLPNHMLLNIAETLP 516
>gi|452823689|gb|EME30697.1| exosome complex exonuclease RRP6 [Galdieria sulphuraria]
Length = 736
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 185/322 (57%), Gaps = 25/322 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q STR EDFVVD ++LR + L ++ ++ KV+HGAD D+ WLQRDFG+Y+ +MF
Sbjct: 262 LQFSTRQEDFVVDAIELRGHLK-MLSKILENGNILKVLHGADSDVQWLQRDFGLYIVHMF 320
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVN---ANKEYQNADWRVRPLPDEMLRYAREDTHYL 117
DTGQASR LK SL YLL +C ++ K YQ ADWR+RPLP++M YAR+DTHYL
Sbjct: 321 DTGQASRQLKFPFLSLSYLLKRYCNIDNSKTKKYYQLADWRIRPLPEDMFSYARQDTHYL 380
Query: 118 LYIYDIMKIKLSSMPKESENSDTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
LYIYD +L ++S N + LT Y+ S V +YEK ++ Y I +
Sbjct: 381 LYIYD----RLCEELRQSSNCNNNLLTCAYRASIQVSMLIYEKPQMNPLEYQSILSRRKL 436
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR------- 229
+ +Q + LC WRD IAR +DES YVLP + +IEIAK++P + ++LR
Sbjct: 437 HFDEKQTLALRTLCRWRDEIARIEDESLVYVLPEKCMIEIAKRIPQSESELRGCCPYSIP 496
Query: 230 -LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSN 288
LLK+ + + + + SI++ S N + E+ + E AS + ++ SN
Sbjct: 497 PLLKTYENEVLKLLQE--SIMEESEWNKSEQEITMCCTNGQMEEYASTPSHIVGF--QSN 552
Query: 289 LKIPNVGRESVDGVDALVGTTM 310
L +P + SV +L G+T+
Sbjct: 553 L-VPPI---SVSSNSSLFGSTL 570
>gi|340723182|ref|XP_003399974.1| PREDICTED: exosome component 10-like [Bombus terrestris]
Length = 1295
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 142/221 (64%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+++DTL LR ++ L E+F T KV HGAD DI WLQRD +Y+ NMF
Sbjct: 296 MQISTGDTDYLIDTLSLRSELHE-LNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMF 354
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++ L L SL YLL H+C V+ +K +Q ADWR+RPLP+++++YAREDTHYLLYI
Sbjct: 355 DTHQAAKQLNLPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYI 414
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D+++ L + N L VY RS ++C+ Y K + +E S + +Y N
Sbjct: 415 KDLLRNALIDVANGQINI---LKAVYDRSTEICKNTYIKPVWTEESCMIMYRKSQKMFNN 471
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L +WRD AR +D+S GYVLPN L+ IA+ LP
Sbjct: 472 KQLYALKELHKWRDQTARGEDDSIGYVLPNHMLLNIAETLP 512
>gi|424513045|emb|CCO66629.1| exosome component 10 [Bathycoccus prasinos]
Length = 911
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 164/283 (57%), Gaps = 31/283 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR +DFVVD L+LR +GP L F++ K KV HGA+ D++WLQRDFGIY+ NMF
Sbjct: 276 IQISTREQDFVVDALRLRHLIGPALGRHFENEEKLKVFHGANSDMIWLQRDFGIYVVNMF 335
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+R+L+L L YLL +CG+ A K+YQ ADWR+RPL EM+ YAR DTH LLY+
Sbjct: 336 DTGQAARILELPSFGLAYLLKQYCGIKAEKKYQLADWRLRPLSREMINYARSDTHSLLYV 395
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY--------- 171
+D +K +L + + + V+ +S DVC YE +++++ SY
Sbjct: 396 HDRLKQELYA-----KGGVECIQSVFLKSRDVCLLTYEPQVITDLSYHEDLMKSANASSG 450
Query: 172 -----------GLQGAGLNAQQL------AVVAGLCEWRDVIARADDESTGYVLPNRTLI 214
Q A L+ + L A + L +WRD ARA+DES G+V+P ++
Sbjct: 451 GGSGHGNTLSRSAQQAQLSQEILKSPVAQAAMEALFKWRDDCARANDESLGFVMPRHLML 510
Query: 215 EIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 257
+A + P A + + + S + ++ + IIK++++ +
Sbjct: 511 RLASEQPKVARDVVSTARGESSLVAKFSHVIADIIKSAVERGS 553
>gi|389640871|ref|XP_003718068.1| exosome complex exonuclease Rrp [Magnaporthe oryzae 70-15]
gi|351640621|gb|EHA48484.1| exosome complex exonuclease Rrp [Magnaporthe oryzae 70-15]
Length = 828
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 169/311 (54%), Gaps = 8/311 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK Q L EVF DP+ KV HGA DIVWLQRD G+Y+ +F
Sbjct: 272 MQISTREKDWIVDTLKPWRQQLEILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLF 331
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L SL YLL F A+K YQ ADWR+RPLP+EML YAR DTHYLLY+
Sbjct: 332 DTFHAAEALMYPSKSLAYLLKKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYV 391
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQ 174
YD+M+ +L + L +RS D Q YE + + ++
Sbjct: 392 YDMMRNELLRQSVSGDPHRDLLERTLQRSKDTALQRYEAYTIDGETGRGSRGWFNLIHRL 451
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ +Q +V L +WRD +AR +DES +++ N+ L++IA+ +P TA LRRL +
Sbjct: 452 PNTFSREQFSVYRALHKWRDDVARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNV 511
Query: 235 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNV 294
+ + ++ +I++S Q A + + +K + A + + + D + K N
Sbjct: 512 GPPVRNAVDELVDLIQDSRQKGATGPSLLEVIKADSANAAF--SNMTLTDAYRSAKTTNA 569
Query: 295 GRESVDGVDAL 305
G+ D DA+
Sbjct: 570 GQGDDDIPDAV 580
>gi|440475179|gb|ELQ43880.1| exosome complex exonuclease RRP6 [Magnaporthe oryzae Y34]
gi|440487108|gb|ELQ66914.1| exosome complex exonuclease RRP6 [Magnaporthe oryzae P131]
Length = 854
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 169/311 (54%), Gaps = 8/311 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK Q L EVF DP+ KV HGA DIVWLQRD G+Y+ +F
Sbjct: 298 MQISTREKDWIVDTLKPWRQQLEILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLF 357
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L SL YLL F A+K YQ ADWR+RPLP+EML YAR DTHYLLY+
Sbjct: 358 DTFHAAEALMYPSKSLAYLLKKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYV 417
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQ 174
YD+M+ +L + L +RS D Q YE + + ++
Sbjct: 418 YDMMRNELLRQSVSGDPHRDLLERTLQRSKDTALQRYEAYTIDGETGRGSRGWFNLIHRL 477
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ +Q +V L +WRD +AR +DES +++ N+ L++IA+ +P TA LRRL +
Sbjct: 478 PNTFSREQFSVYRALHKWRDDVARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNV 537
Query: 235 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNV 294
+ + ++ +I++S Q A + + +K + A + + + D + K N
Sbjct: 538 GPPVRNAVDELVDLIQDSRQKGATGPSLLEVIKADSANAAF--SNMTLTDAYRSAKTTNA 595
Query: 295 GRESVDGVDAL 305
G+ D DA+
Sbjct: 596 GQGDDDIPDAV 606
>gi|242011128|ref|XP_002426307.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212510384|gb|EEB13569.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 737
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 4/224 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR D+V+DT+ LR ++ L ++F +P KV HGAD DI+WLQRD +Y+ NMF
Sbjct: 291 LQISTRDTDYVIDTIALRSKLEG-LNKIFTNPNIVKVFHGADLDILWLQRDLSLYVVNMF 349
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA ++L SL YL+ HFC + A K +Q ADWR+RPLPDE+L YAREDTHYLLYI
Sbjct: 350 DTHQAGKLLNYSSLSLAYLMFHFCKIVAQKHFQMADWRIRPLPDELLAYAREDTHYLLYI 409
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD ++ L E +N L V S +C + Y+K E+ Y+ IY +
Sbjct: 410 YDNLRNILIEKSNEQKNL---LRTVINESTRICLKTYKKPNFDESGYMSIYTRSKKIFDN 466
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 224
+Q + L WRD AR DES YVLPN ++ I++ LP A
Sbjct: 467 RQKYALQRLYAWRDSTARELDESLAYVLPNHMMLNISEVLPREA 510
>gi|350418690|ref|XP_003491936.1| PREDICTED: hypothetical protein LOC100746784 [Bombus impatiens]
Length = 1271
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 142/221 (64%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+++DTL LR ++ L E+F T KV HGAD DI WLQRD +Y+ NMF
Sbjct: 296 MQISTGDTDYLIDTLSLRSELHE-LNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMF 354
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++ L + SL YLL H+C V+ +K +Q ADWR+RPLP+++++YAREDTHYLLYI
Sbjct: 355 DTHQAAKQLNMPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLMKYAREDTHYLLYI 414
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D+++ L + N L VY RS ++C++ Y K + +E S + +Y N
Sbjct: 415 KDLLRNALIDVANGQINI---LKAVYDRSTEICKKTYIKPVWTEESCMIMYRKSQKMFNN 471
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L +WRD AR +D+S YVLPN L+ IA+ LP
Sbjct: 472 KQLYALKELHKWRDQTARGEDDSIAYVLPNHMLLNIAETLP 512
>gi|195501501|ref|XP_002097822.1| GE26425 [Drosophila yakuba]
gi|194183923|gb|EDW97534.1| GE26425 [Drosophila yakuba]
Length = 900
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 146/222 (65%), Gaps = 7/222 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR++D++ DTL LR ++ L V DP K K++HGAD DI WLQRD +Y+ NMF
Sbjct: 312 VQMSTRSKDYIFDTLILRDEMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMF 370
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L L R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+
Sbjct: 371 DTHRAAKALNLARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYV 430
Query: 121 YDIMKIKLSSMPKESENSDTPLT-EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
Y+ M L +++D L VY++S DVC++ Y K + S+L + +
Sbjct: 431 YERMTNDLL-----QQHADPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFD 485
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 486 NRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 527
>gi|322799595|gb|EFZ20873.1| hypothetical protein SINV_12011 [Solenopsis invicta]
Length = 813
Score = 205 bits (521), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 141/221 (63%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST T D+++DTL LR ++ L E+F P+ KV HGAD DI+WLQRD +Y+ NMF
Sbjct: 303 MQISTITTDYLIDTLTLRSELH-RLNEIFTKPSILKVFHGADMDILWLQRDLSLYVVNMF 361
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R L L SL +L+ +C ++ NK++Q ADWR+RPLP E+ RYAREDT YLLYI
Sbjct: 362 DTHQAARQLNLPYLSLAHLIKKYCDIDLNKQFQLADWRIRPLPLELTRYAREDTRYLLYI 421
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D++ +L N L VY +S ++C++ Y K + +E S + +Y N
Sbjct: 422 KDMLNNELIDAANGKSNI---LKAVYDQSTEICKRTYVKPIWTEESCIDLYRKSRKSFNN 478
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+ + L WRD+IAR +D+S YVLP ++ IA+ LP
Sbjct: 479 KQMYALVELHRWRDLIAREEDDSIDYVLPKHMMLNIAETLP 519
>gi|195108841|ref|XP_001999001.1| GI24274 [Drosophila mojavensis]
gi|193915595|gb|EDW14462.1| GI24274 [Drosophila mojavensis]
Length = 901
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 145/221 (65%), Gaps = 5/221 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT+D++ DTLKLR ++ L V DP K++HGAD DI WLQRD +Y+ NMF
Sbjct: 318 VQMSTRTKDYIFDTLKLREEMH-ILNLVLTDPKVLKILHGADLDIEWLQRDLSLYIVNMF 376
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+DTHYL+YI
Sbjct: 377 DTHRAAKALNMARLSLAFLLKHYLDLDVDKSLQLADWRMRPLPQKLIDYARQDTHYLIYI 436
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y+ +L++ +SE L VY+ S DVC++ Y K + +S+L + +
Sbjct: 437 YE----RLTNDLLQSEQGLQGLRMVYQMSTDVCKKRYTKPHIGPDSHLDLVRKTKRSFDN 492
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + G+ WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 493 RQLHALRGIFVWRDSTARQEDESYGYVLPNHMMLQIAESLP 533
>gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10-like, partial [Taeniopygia guttata]
Length = 504
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 128/174 (73%), Gaps = 4/174 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL LR + L E F DP KV+HGAD D+ WLQRDFG+YL N+F
Sbjct: 333 MQISTRTEDFIIDTLALRSDMN-ILNETFTDPAIVKVLHGADSDVEWLQRDFGLYLVNVF 391
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV+A+K+YQ ADWR+RPLP+EM+RYAR+DTHYLLYI
Sbjct: 392 DTHQAARLLNLGRHSLDHLLKLYCGVDADKKYQLADWRIRPLPEEMIRYARDDTHYLLYI 451
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YD ++ L KE T L V++RS D+C + Y K L ++ SYL +Y Q
Sbjct: 452 YDKVRELLWERGKEQP---TQLQVVWQRSRDICLKKYIKPLFTDESYLDLYRRQ 502
>gi|195143871|ref|XP_002012920.1| GL23665 [Drosophila persimilis]
gi|194101863|gb|EDW23906.1| GL23665 [Drosophila persimilis]
Length = 903
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 144/221 (65%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT+D++ D+L LR ++ L V DP K K++HGAD+DI WLQRD +Y+ NMF
Sbjct: 318 VQMSTRTKDYIFDSLALREEMH-VLNLVLTDPKKVKILHGADQDIEWLQRDLSLYVVNMF 376
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+DTHYL+Y+
Sbjct: 377 DTHRAAKALNMARLSLAFLLKHYVDLDVDKSLQLADWRMRPLPQQLIDYARQDTHYLIYV 436
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y+ M + + + + L VY+ S +VC++ Y K + S+L + +
Sbjct: 437 YERMT---NDILQAEQGQSQALRTVYQLSMEVCKKRYTKPHIGPESHLDLVRKTKRSFDN 493
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + GL +WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 494 RQLHALRGLFQWRDATARQEDESYGYVLPNHMMLQIAESLP 534
>gi|194900862|ref|XP_001979974.1| GG21034 [Drosophila erecta]
gi|190651677|gb|EDV48932.1| GG21034 [Drosophila erecta]
Length = 900
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 144/222 (64%), Gaps = 7/222 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMF
Sbjct: 312 VQMSTRSKDYIFDTLILREDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMF 370
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L L R SL YLL ++ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+
Sbjct: 371 DTHRAAKALNLARLSLAYLLKYYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYV 430
Query: 121 YDIMKIKLSSMPKESENSDTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
Y+ M L + +DT L VY++S DVC++ Y K + S+L + +
Sbjct: 431 YERMTNDLL-----QQQTDTGLLASVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFD 485
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + G+ EWRD AR +DES GYVLPN +++IA+ LP
Sbjct: 486 NRQLYALRGIFEWRDATARLEDESYGYVLPNHMMLQIAESLP 527
>gi|125773943|ref|XP_001358230.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
gi|54637966|gb|EAL27368.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
Length = 905
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 144/221 (65%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT+D++ D+L LR ++ L V DP K K++HGAD+DI WLQRD +Y+ NMF
Sbjct: 318 VQMSTRTKDYIFDSLALREEMH-VLNLVLTDPKKVKILHGADQDIEWLQRDLSLYVVNMF 376
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+DTHYL+Y+
Sbjct: 377 DTHRAAKALNMARLSLAFLLKHYVDLDVDKSLQLADWRMRPLPQQLIDYARQDTHYLIYV 436
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y+ M + + + + L VY+ S +VC++ Y K + S+L + +
Sbjct: 437 YERMT---NDLLQAEQGQSQALRTVYQLSTEVCKKRYTKPHVGPESHLDLVRKTKRSFDN 493
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + G+ +WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 494 RQLHALRGIFQWRDATARQEDESYGYVLPNHMMLQIAESLP 534
>gi|341889055|gb|EGT44990.1| hypothetical protein CAEBREN_17638 [Caenorhabditis brenneri]
Length = 864
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 167/277 (60%), Gaps = 19/277 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR EDF++D + ++G L + F +PT KV+HG+D D++WLQRDFG+++ N+F
Sbjct: 312 IQISTRDEDFIIDPFPIWDEIG-ILNDPFANPTILKVLHGSDNDVLWLQRDFGVHIVNLF 370
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + LK + +L YL+ F V +K+YQ ADWR RPL M+ YAREDTHYLLY
Sbjct: 371 DTYVAMKKLKFPKFNLAYLVSRFADVILDKQYQLADWRARPLSKAMINYAREDTHYLLYC 430
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+++ +L K++E L +Y DVC ++Y+K + + Y+ L+ A LN+
Sbjct: 431 YDMLREQLL---KQNEQD---LASMYSECTDVCVRVYKKPVFNPKGYMTEIKLRFA-LNS 483
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+Q V+ L WRD +ARA+DES +VLPN L+ I++ LP + ++++
Sbjct: 484 RQDYVLTNLYRWRDTVARAEDESPQFVLPNTMLLNISESLPRDIGSIYGCCNPLPLFVKK 543
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEE 277
+G +L I+ V A+ +K E++E ++E
Sbjct: 544 RVGDILKIV-----------VQARDVKLEKIERTTKE 569
>gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans]
Length = 741
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 153/254 (60%), Gaps = 4/254 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR+ED++VD L+LR + L VF D KV HGA D+ WLQ+DFG+Y+ NMF
Sbjct: 260 MQLSTRSEDYIVDVLRLRSHMH-RLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYVANMF 318
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + +SL + + HFCGV +K+YQ ADWR+RP+P EM+ YAR+DTHYLLY+
Sbjct: 319 DTGIALQTLHMP-HSLAFAVDHFCGVRLDKKYQTADWRIRPVPSEMIHYARQDTHYLLYV 377
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-ENSYLHIYGLQGAGLN 179
+D +K L + + L VY+ S +C YEK +L + +Y G GL+
Sbjct: 378 HDRLKALLLHAEGRASVGNL-LVHVYQDSRRLCLTRYEKPMLDVDTTYREAMGKSLGGLS 436
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
A QL V+ + WRD AR DES ++ +++IA +LPT+A ++ +
Sbjct: 437 ATQLEVLRVVFNWRDQAARDADESPPAIMHASAILQIASKLPTSAKEILACCAPVSLVVR 496
Query: 240 RYMGPVLSIIKNSM 253
R +G + ++K ++
Sbjct: 497 RDIGHLCDLVKKTL 510
>gi|161078302|ref|NP_001097795.1| Rrp6 [Drosophila melanogaster]
gi|158030263|gb|AAF55107.3| Rrp6 [Drosophila melanogaster]
Length = 900
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 141/221 (63%), Gaps = 5/221 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMF
Sbjct: 312 VQMSTRSKDYIFDTLILRDDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMF 370
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+
Sbjct: 371 DTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYV 430
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y M L E L VY++S DVC++ Y K + S+L + +
Sbjct: 431 YGRMTNDLLQQHAEP----GLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDN 486
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 487 RQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 527
>gi|189182142|gb|ACD81847.1| LD13130p [Drosophila melanogaster]
Length = 930
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 141/221 (63%), Gaps = 5/221 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMF
Sbjct: 342 VQMSTRSKDYIFDTLILRDDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMF 400
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+
Sbjct: 401 DTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYV 460
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y M L E L VY++S DVC++ Y K + S+L + +
Sbjct: 461 YGRMTNDLLQQHAEP----GLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDN 516
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 517 RQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 557
>gi|383792210|gb|AFH41845.1| FI19715p1 [Drosophila melanogaster]
Length = 930
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 141/221 (63%), Gaps = 5/221 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMF
Sbjct: 342 VQMSTRSKDYIFDTLILRDDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMF 400
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+
Sbjct: 401 DTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYV 460
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y M L E L VY++S DVC++ Y K + S+L + +
Sbjct: 461 YGRMTNDLLQQHAEP----GLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDN 516
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 517 RQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 557
>gi|308473314|ref|XP_003098882.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
gi|308268021|gb|EFP11974.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
Length = 860
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 161/277 (58%), Gaps = 19/277 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR EDF++D + +G L E F +P KV HGAD D++WLQRDFGI++ N+F
Sbjct: 309 IQISTRDEDFIIDPFPMWDCIG-ILNEPFTNPKILKVFHGADNDVLWLQRDFGIHIVNLF 367
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY
Sbjct: 368 DTYVAMKKLKYPKFSLAYLAFRFADVILDKQYQLADWRARPLRNAMINYAREDTHYLLYS 427
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+++ +L K+ L VY D+C ++Y+K + YL L+ N+
Sbjct: 428 YDMLREQLLKQDKKD------LNVVYSECNDLCVRVYKKPVFKPKGYLTDLKLRFT-FNS 480
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+Q + L +WRDV+AR +DES +VLPN L+ +A+QLP + ++++
Sbjct: 481 RQDHALTSLYKWRDVVARQEDESPQFVLPNHMLLALAEQLPRDVGGIYACCNPLPHFVKK 540
Query: 241 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEE 277
G +L II V A+++K E+++V ++E
Sbjct: 541 LAGQILKII-----------VEAREVKLEKVKVTAKE 566
>gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
Length = 827
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 158/274 (57%), Gaps = 6/274 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+++DTL L EVF DP KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 268 MQISTREKDWIIDTLVPWRHKLEVLNEVFADPKIVKVLHGAFMDIIWLQRDLGLYVVGLF 327
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS L+ SL +LL F +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYI
Sbjct: 328 DTFYASTALQYAGKSLAFLLKKFVDFDADKKYQLADWRLRPLPEEMFYYARSDTHFLLYI 387
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQG 175
YD+++ +L+ + ++ + P V ++S +V Q YE + N H +
Sbjct: 388 YDMLRNELAQLATQNGSDGHPTDRVIQKSKEVALQRYENSFCDPETGAGNRGWHATLTKS 447
Query: 176 AGL-NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ L +++Q AV + +WRD IAR +DES +++ + L IA+ +PT L LL+S
Sbjct: 448 STLYDSEQFAVYKAVHKWRDDIARQEDESPFFIMTQQVLSNIARIMPTDMKALWSLLESN 507
Query: 235 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKE 268
++ +G + II + AN + Q ++
Sbjct: 508 TGALKSRLGELFKIITEAKAQGANGPTMLQFFRQ 541
>gi|392566464|gb|EIW59640.1| hypothetical protein TRAVEDRAFT_147720 [Trametes versicolor
FP-101664 SS1]
Length = 850
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 173/332 (52%), Gaps = 43/332 (12%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR DFVVDT+ LR ++ L EVF DP KV HGA+ DIVWLQ+DF +Y+ N+F
Sbjct: 285 MQISTREADFVVDTIALRDEM-EELNEVFTDPDVVKVFHGAESDIVWLQQDFNLYVVNLF 343
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+VL R+ L LL +C A+K YQ ADWR+RPLP+EML+YAR DTH+LL+I
Sbjct: 344 DTYHASKVLDFPRHGLATLLEMYCDFTADKRYQLADWRIRPLPEEMLQYARSDTHFLLFI 403
Query: 121 YDIMKIKL-----------SSMPKESENSDTP----------LTEVYKRSYDVCRQLYEK 159
YD ++ L + P S + TP + EV RS + + YEK
Sbjct: 404 YDNLRNALLDRAQSRAQSRAQSPSSSAATPTPESSYPPAHALVREVLSRSEETALREYEK 463
Query: 160 ELLSENSYLHIYGL-------------------QGAGLNAQQLAVVAGLCEWRDVIARAD 200
EL ++ G +GA Q AV + WRD IAR +
Sbjct: 464 ELYDTDTGAGPGGWDTLARKWNKASLMAVSSDREGATAVNVQRAVYRTVHGWRDRIAREE 523
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFE 260
DEST YVLPN L +A++ P A L + I R +L I+++++ A
Sbjct: 524 DESTRYVLPNHYLFSLAERTPADMAALLSVFHPVPPVIRRRAKELLDAIRDTVKGA--LG 581
Query: 261 VIAQKLKEERMEVASEETEVLVLDTSSNLKIP 292
A+ + A++E +L+ + +S ++P
Sbjct: 582 PTAETPRAPAGPSAAQEVAMLIDEEASAAEMP 613
>gi|403418903|emb|CCM05603.1| predicted protein [Fibroporia radiculosa]
Length = 751
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 168/327 (51%), Gaps = 48/327 (14%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR ED+VVD L +R ++ L EV DP KV+HGA+ DI+WLQ+DF +Y+ N+F
Sbjct: 181 MQISTRDEDWVVDALAVRDEMEA-LNEVLTDPAIVKVLHGAESDIIWLQQDFNLYIVNLF 239
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS++L+ R+SL LL +C A+K YQ ADWR+RPLP+EML YAR DTH+LL+I
Sbjct: 240 DTYHASKILEFPRHSLATLLEMYCDFTADKRYQLADWRIRPLPEEMLAYARSDTHFLLFI 299
Query: 121 YDIMKIKL----SSMPKESENSDTPLT----------------EVYKRSYDVCRQLYEKE 160
YD ++ L S P S + + EV RS D ++YEKE
Sbjct: 300 YDNLRNALIDRAQSRPHSRSQSPSAVVTSPSSHPTNQAHALVREVLSRSEDTALRVYEKE 359
Query: 161 LLSE----------------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 204
+ N + + G G A Q + G+ WRD IAR +DEST
Sbjct: 360 IYDADSGAGPGGWDTLARKWNKGVLMAGAPEGGPYAVQRTIYRGVHAWRDRIAREEDEST 419
Query: 205 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQ 264
YVLPN L +A++ P A L LL I R +L I+ ++ + A
Sbjct: 420 RYVLPNHYLFVLAERPPADMAALLSLLHPVPPVIRRRSKELLDAIRAAIASVAPVS---- 475
Query: 265 KLKEERMEVASEETEVLVLDTSSNLKI 291
M VA EE + VL + L I
Sbjct: 476 ------MTVA-EEAKTNVLAAADGLTI 495
>gi|367047893|ref|XP_003654326.1| hypothetical protein THITE_2117244 [Thielavia terrestris NRRL 8126]
gi|347001589|gb|AEO67990.1| hypothetical protein THITE_2117244 [Thielavia terrestris NRRL 8126]
Length = 882
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 153/274 (55%), Gaps = 6/274 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL L EVF DP KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 269 MQISTREKDWIVDTLVPWRHKLEVLNEVFADPRIVKVLHGAFMDIIWLQRDLGLYVVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A L SL +LL F +A+K+YQ ADWR+RPLPDEM YAR DTHYLLYI
Sbjct: 329 DTYYACDALGYAGRSLAFLLKKFADFDADKKYQLADWRIRPLPDEMFYYARSDTHYLLYI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL-- 178
YD+++ +L+ + +S + P+ V ++S +V Q Y L + G +
Sbjct: 389 YDMLRNELAELSAQSPPGEKPIDRVIQKSKEVSLQRYVHPLCDRETGAGSRGWYNTLIKS 448
Query: 179 ----NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
N +Q AV + +WRD +AR +DES Y++ + L +IA+ LPT L LL S
Sbjct: 449 PTLYNGEQFAVYKAVHKWRDDVARREDESPYYIMTQQVLADIARILPTDPKALWSLLDSN 508
Query: 235 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKE 268
++ + + +I+ + AN + + K+
Sbjct: 509 ARALKPRLTELFGVIERARAAGANGPTMMEFFKQ 542
>gi|195570818|ref|XP_002103401.1| GD20396 [Drosophila simulans]
gi|194199328|gb|EDX12904.1| GD20396 [Drosophila simulans]
Length = 896
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 158/249 (63%), Gaps = 9/249 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMF
Sbjct: 312 VQMSTRSKDYIFDTLILRDDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMF 370
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+
Sbjct: 371 DTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYV 430
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y+ M L E L VY++S DVC++ Y K + S+L + +
Sbjct: 431 YERMTNDLLQQQAEP----GLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDN 486
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QL + G+ EWRD AR++DES GYVLPN +++IA+ +++ ++ +L ++++ I +
Sbjct: 487 RQLYALRGIFEWRDATARSEDESYGYVLPNHKMVQIAE---SSSREMHGIL-ARYNLIPQ 542
Query: 241 YMGPVLSII 249
+ +L I+
Sbjct: 543 LLHTLLPIV 551
>gi|452978276|gb|EME78040.1| hypothetical protein MYCFIDRAFT_107101, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 799
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 139/239 (58%), Gaps = 10/239 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HGA DI+WLQRD G+YL +F
Sbjct: 270 MQISTRDKDWIVDTLKPWRRKLQCLNEVFADPNILKVLHGAYMDIIWLQRDLGLYLVGLF 329
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L SL YLL F GV+A K+YQ ADWRVRPLP + YAR DTHYLLYI
Sbjct: 330 DTHHAARALGYPAGSLAYLLKRFAGVDAQKKYQTADWRVRPLPQALFDYARSDTHYLLYI 389
Query: 121 YDIMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-EN-----SYLHIY 171
+D ++ I+ S + D L +V +S + Q YE + EN + +
Sbjct: 390 FDNLRNELIQRSDFGLPNHEGDK-LWDVLTKSSETALQRYEHPIYDVENGQGSFGWYKLL 448
Query: 172 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
A L +Q +V + +WRD +AR D+ST +V+PN L IAK +PTT L L
Sbjct: 449 AKTSAMLTKEQFSVFRAVHQWRDEVAREQDDSTNFVMPNWQLFNIAKSMPTTRQALFSL 507
>gi|195390616|ref|XP_002053964.1| GJ23053 [Drosophila virilis]
gi|194152050|gb|EDW67484.1| GJ23053 [Drosophila virilis]
Length = 904
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 143/221 (64%), Gaps = 5/221 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT+D++ DTL LR + L V DP K++HG D DI WLQRD +Y+ NMF
Sbjct: 315 VQMSTRTKDYIFDTLTLREDMH-ILNLVLTDPKVLKILHGGDLDIEWLQRDLSLYIVNMF 373
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+DTHYL+Y+
Sbjct: 374 DTHRAAKALNMARLSLAFLLKHYLDLDVDKSLQLADWRMRPLPQKLIDYARQDTHYLIYV 433
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y+ +L++ ++E L VY+ S +VC++ Y K + +S+L + +
Sbjct: 434 YE----RLTNDLLQAEQGPQALRMVYQMSTEVCKKRYTKPHIGPDSHLDLVRKTKRSFDN 489
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL+ + G+ WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 490 RQLSALRGIFVWRDATARQEDESYGYVLPNHMMLQIAESLP 530
>gi|398022862|ref|XP_003864593.1| unnamed protein product [Leishmania donovani]
gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani]
Length = 743
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 156/257 (60%), Gaps = 6/257 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VD LKLR +G L VF +P+ KV+HGA DI WLQ+DF +Y+ N F
Sbjct: 274 MQISTREEDFIVDCLKLRSSMGA-LAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNFF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + +SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY+
Sbjct: 333 DTGVALQTLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYV 391
Query: 121 YDIMK-IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGL 178
YD +K + L+S + S S L VY S + Q+YEK ++ E +Y G +GL
Sbjct: 392 YDRLKALLLNSEGRASIGS--LLVHVYNESKQLSLQIYEKPSVVPEETYKIALGRSLSGL 449
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
N Q V + WRD AR D+S VL +++ IA +LPTTA L R + +
Sbjct: 450 NKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVV 509
Query: 239 ERYMGPVLSIIKNSMQN 255
+ ++ ++K+++ +
Sbjct: 510 RDNVALLVDLVKDAVAS 526
>gi|195451328|ref|XP_002072866.1| GK13832 [Drosophila willistoni]
gi|194168951|gb|EDW83852.1| GK13832 [Drosophila willistoni]
Length = 913
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 140/221 (63%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST ++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMF
Sbjct: 325 VQMSTCSKDYIFDTLVLREDMQ-LLNLVMTDPKKLKILHGADLDIEWLQRDLSLYIVNMF 383
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP E++ YAR+DTHYL+Y+
Sbjct: 384 DTHRAAKALNMARLSLAFLLKHYVDLDVDKSLQLADWRMRPLPQELINYARQDTHYLIYV 443
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y + + + K L VY+ S +VCR+ Y K + +S+L + +
Sbjct: 444 YQCLT---NDLLKLDNGHQQILRSVYQMSTEVCRKRYTKPHIGPDSHLDLVRKTKQIFDN 500
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + GL EWRD AR +DES GYV+PN +++IA+ LP
Sbjct: 501 RQLHALRGLFEWRDTTARQEDESYGYVMPNHMMLQIAESLP 541
>gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue, putative [Leishmania infantum
JPCM5]
gi|134073021|emb|CAM71740.1| exosome subunit rrp6p homologue, putative [Leishmania infantum
JPCM5]
Length = 743
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 156/257 (60%), Gaps = 6/257 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VD LKLR +G L VF +P+ KV+HGA DI WLQ+DF +Y+ N F
Sbjct: 274 MQISTREEDFIVDCLKLRSSMGA-LAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNFF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + +SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY+
Sbjct: 333 DTGVALQTLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYV 391
Query: 121 YDIMK-IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGL 178
YD +K + L+S + S S L VY S + Q+YEK ++ E +Y G +GL
Sbjct: 392 YDRLKALLLNSEGRASIGS--LLVHVYNESKQLSLQIYEKPSVVPEETYKIALGRSLSGL 449
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
N Q V + WRD AR D+S VL +++ IA +LPTTA L R + +
Sbjct: 450 NKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVV 509
Query: 239 ERYMGPVLSIIKNSMQN 255
+ ++ ++K+++ +
Sbjct: 510 RDNVALLVDLVKDAVAS 526
>gi|315054289|ref|XP_003176519.1| exosome component 3'-5' exonuclease [Arthroderma gypseum CBS
118893]
gi|311338365|gb|EFQ97567.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
Length = 827
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 153/268 (57%), Gaps = 10/268 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +F
Sbjct: 292 MQISTREQDWIVDTLKPWRDQLQILNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLF 351
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ VL+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI
Sbjct: 352 DTFHAASVLQLPKKSLKFLLHEYVGFDADKKYQTADWRIRPLLTGMLDYARSDTHFLLYI 411
Query: 121 YDIMKIKLSSMPKESENSDTPLTE----VYKRSYDVCRQLYEKELL------SENSYLHI 170
+D ++ +L ++ + ++ E V +RS + Q YE+ + +
Sbjct: 412 FDRLRNELLALDSDLSSAGVGGREAIECVLERSKESALQRYERPTYDAARGRGSGGWHDM 471
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +Q AV L EWRD +AR DDEST VL R+L IA+++P + R+
Sbjct: 472 LSTSPVALTREQFAVFRALHEWRDKVARTDDESTQTVLSKRSLFRIAQEMPEDKFAVLRM 531
Query: 231 LKSKHSYIERYMGPVLSIIKNSMQNAAN 258
+ + V ++I+ + Q A
Sbjct: 532 ASPVSASLRSRTDEVAALIRQARQGGAT 559
>gi|194743298|ref|XP_001954137.1| GF18126 [Drosophila ananassae]
gi|190627174|gb|EDV42698.1| GF18126 [Drosophila ananassae]
Length = 909
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 141/221 (63%), Gaps = 5/221 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR++D++ DTL LR ++ L V DP K K++HGAD DI WLQRD +Y+ NMF
Sbjct: 324 VQMSTRSKDYIFDTLILRDEMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMF 382
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L L R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+
Sbjct: 383 DTHRAAKALNLARLSLAFLLKHYIDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYV 442
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y+ M L E + L VY S +VC++ Y K + S+L + +
Sbjct: 443 YERMTNDLL----EQQVETGLLNNVYMMSTEVCKKRYNKPHVGPESHLDLVRKTKRNFDN 498
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + G+ EWRD AR +DES GYVLPN +++IA+ LP
Sbjct: 499 RQLYALRGIFEWRDATARLEDESYGYVLPNHMMLQIAESLP 539
>gi|391347098|ref|XP_003747802.1| PREDICTED: exosome component 10-like [Metaseiulus occidentalis]
Length = 867
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 143/221 (64%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST +D+++D L+LR + L EV DP KV+HG+ D+ WLQRDFG+Y+ N+F
Sbjct: 292 VQVSTWDKDYIIDPLELRGHLH-VLNEVTTDPKIVKVLHGSHSDVQWLQRDFGVYIVNLF 350
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A+++L ER SL YLL F V ++K +Q DWR+RPLP EM+ YAR DTHYLL I
Sbjct: 351 DTGIAAKLLNYERLSLSYLLKKFEQVESDKRFQLVDWRIRPLPKEMIEYARTDTHYLLSI 410
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+ +K +L++ E+ N + V++RS +C + YEK +L+E S+ ++ N
Sbjct: 411 CEKLKEELNNASNEAGNL---MKAVWQRSSLLCLKRYEKPILTEESHRNLLKTANKRFND 467
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + + WRD +AR DESTGYVLPN L+ I + LP
Sbjct: 468 KQLYALKHIFAWRDRLARELDESTGYVLPNHMLLNICELLP 508
>gi|328767973|gb|EGF78021.1| hypothetical protein BATDEDRAFT_27210 [Batrachochytrium
dendrobatidis JAM81]
Length = 826
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 157/285 (55%), Gaps = 8/285 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL LR + L F +P KV HGA+ DI WLQRDFG+Y+ ++F
Sbjct: 289 MQISTRTEDFLVDTLILRNSLHA-LNTSFANPQIVKVFHGAEMDIQWLQRDFGVYVVDLF 347
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS L+LE +SL +LL ++C V +K YQ ADWR+RPLP EM+ YAR DTHYLLYI
Sbjct: 348 DTYHASHALELEGHSLAFLLKYYCDVVTDKRYQLADWRIRPLPKEMVHYARMDTHYLLYI 407
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYGLQG 175
+D M+ +L + K + + + +RS Y+ K+ LS N + +
Sbjct: 408 FDRMRNEL--LNKSNPETHNLMHVTLERSGLTSLNTYQKAPYCKDGLSPNGWRSLLNRLK 465
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 235
N + LAV + EWRD IAR +DES +VLPN L +++ +PT +
Sbjct: 466 ISFNEENLAVFKAIHEWRDRIARKEDESLRFVLPNHMLQTLSRVMPTDGPAVVACCSPTP 525
Query: 236 SYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV 280
S + Y + +I ++ + + + A+ E++
Sbjct: 526 SLVRLYSKELAHLIFQTVNTVRQLTTMKNNAAKNILSQATSESDT 570
>gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
gi|353232486|emb|CCD79841.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
Length = 830
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 151/250 (60%), Gaps = 10/250 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST D+++D L LR + L EVF DP KV HG+D D++WLQRDFG+Y+ N+F
Sbjct: 255 IQMSTLGSDYIIDALALRDHLS-ILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLF 313
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A+R+L+ R SL YLL F G+ ANK+YQ ADWR+RPLP+E++ YAR DTHYLL+I
Sbjct: 314 DTGIAARLLQYGRFSLSYLLQRFVGIYANKKYQLADWRIRPLPNELIEYARSDTHYLLHI 373
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLN 179
S M +E ++ D L+ +R+ +C + Y K + + YL +Y G + +
Sbjct: 374 -------ASRMCRELQDRDL-LSVAIERARQLCLRCYTKPVFNRLGYLDLYRQTGSSSFS 425
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+QL + L RD IAR +DES YVLPN L IA+ LP ++ + +
Sbjct: 426 HRQLYALENLYALRDSIARREDESLHYVLPNHMLKVIAEVLPRESSGIFACCNPIPPLVR 485
Query: 240 RYMGPVLSII 249
+Y+ + II
Sbjct: 486 KYVHDLHKII 495
>gi|13278238|gb|AAH03952.1| Exosc10 protein, partial [Mus musculus]
Length = 517
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 126/176 (71%), Gaps = 3/176 (1%)
Query: 46 VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDE 105
V LQ+DFG+Y+ NMFDT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+E
Sbjct: 3 VGLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEE 62
Query: 106 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 165
ML YAR+DTHYLLYIYD M+++L + + L V++RS D+C + + K + ++
Sbjct: 63 MLSYARDDTHYLLYIYDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDE 119
Query: 166 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
SYL +Y Q LN+QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 120 SYLELYRKQKKHLNSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 175
>gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
yFS275]
gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
yFS275]
Length = 782
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 164/285 (57%), Gaps = 25/285 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL+LR ++ L VF DP KV+HGA D++WLQRDFG+YL +F
Sbjct: 258 MQISTRNQDWIVDTLELREELE-CLNIVFTDPKIIKVLHGATMDVIWLQRDFGLYLVGLF 316
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++ L E + L +LL +C A+K YQ ADWR+RPLP EML+YA+ DTH+LLY+
Sbjct: 317 DTYYATKALGFEGHGLAFLLKKYCQFEADKRYQMADWRIRPLPKEMLKYAQSDTHFLLYV 376
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
+D ++++L + + S + + V K S DV + YE+E +Y IYGL G
Sbjct: 377 FDCLRVEL--LEQSSRRKEDLMQYVVKSSDDVALRRYERE-----AYDEIYGLGTDGWRH 429
Query: 178 ----------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + LAV L WRD +AR +DES YV+PN L+++A +P+ + L
Sbjct: 430 VLTKWGSSKIIGREALAVFKSLHRWRDQVARNEDESVRYVMPNHLLVKLAASMPSDPSDL 489
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 272
+ + Y ++ +I QNA EV E+R E
Sbjct: 490 YTSARQLPPLVRMYANEIIEVI----QNAREDEVKRATTDEQRTE 530
>gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus]
Length = 497
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 125/171 (73%), Gaps = 4/171 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 171
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y
Sbjct: 448 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELY 495
>gi|157876102|ref|XP_001686412.1| putative exosome subunit rrp6p homologue [Leishmania major strain
Friedlin]
gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain
Friedlin]
Length = 742
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 156/257 (60%), Gaps = 6/257 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VD LKLR +G L VF +P+ KV+HGA DI WLQ+DF +Y+ N+F
Sbjct: 273 MQISTREEDFIVDCLKLRSSMGA-LAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNLF 331
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY+
Sbjct: 332 DTGVALQTLHMP-YSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYV 390
Query: 121 YDIMK-IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGL 178
+D +K + L+S + S S L VY S + Q+YEK ++ E +Y G +GL
Sbjct: 391 HDRLKALLLNSEGRASIGS--VLVHVYNESKQLSLQIYEKPNVVPEETYKMALGRSLSGL 448
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
N Q V + WRD AR D+S VL +++ IA +LPTTA L R + +
Sbjct: 449 NKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVV 508
Query: 239 ERYMGPVLSIIKNSMQN 255
+ ++ ++K+++ +
Sbjct: 509 RDNVTLLVDLVKDAVAS 525
>gi|440640360|gb|ELR10279.1| hypothetical protein GMDG_04665 [Geomyces destructans 20631-21]
Length = 782
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 153/273 (56%), Gaps = 6/273 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK Q L EVF DP KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 262 MQISTREKDWIVDTLKPWRQDLQVLNEVFTDPKILKVLHGAFMDILWLQRDLGLYIVGLF 321
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + L SL +LL F +A+K+YQ ADWR+RPLP+ M YAR DTH+LLYI
Sbjct: 322 DTNHACKALGYAGGSLAFLLKKFIDFDADKKYQMADWRIRPLPEGMFFYARADTHFLLYI 381
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQ 174
YD M+ +L K + L V ++S + Y+ + + +
Sbjct: 382 YDNMRNELVERSKPVPAEENRLEIVLRKSKETSLFRYDSPRYNATTGKGPGGWFQALVKV 441
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ LN +Q AV + WRD IAR DD+ST +V+ N TL+ +AK +PT A L +
Sbjct: 442 PSLLNNEQFAVFRAVHAWRDKIARQDDDSTNFVMANHTLLSVAKVMPTDMASLLGTVHPI 501
Query: 235 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLK 267
++ G +L +IK + NA + +A+ LK
Sbjct: 502 SYNVKARTGELLELIKAAKTNAKDGPSMAEVLK 534
>gi|401428763|ref|XP_003878864.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 743
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/255 (43%), Positives = 154/255 (60%), Gaps = 6/255 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VD LKLR +G L VF +P+ KV HGA DI WLQ+DF +Y+ N F
Sbjct: 274 MQISTREEDFIVDCLKLRSSMGA-LAPVFLNPSILKVFHGAREDIRWLQKDFSLYVVNFF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY+
Sbjct: 333 DTGVALQTLHMP-YSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYV 391
Query: 121 YDIMK-IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGL 178
+D +K + L+S + S S L VY S + Q+YEK ++ E +Y G +GL
Sbjct: 392 HDRLKALLLNSEGRASIGS--LLVHVYNESKQLSLQIYEKPNVVPEETYKIALGRSLSGL 449
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
N Q V + WRD AR D+S VL +++ IA +LPTTA +L R + +
Sbjct: 450 NKVQEKVACDVFNWRDSAAREVDDSPMAVLHLSSVLSIASKLPTTAKELLRCCAPATAVV 509
Query: 239 ERYMGPVLSIIKNSM 253
+ ++ ++K+++
Sbjct: 510 RDNVALLVDLVKDAV 524
>gi|320588480|gb|EFX00949.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
Length = 1631
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 166/296 (56%), Gaps = 34/296 (11%)
Query: 1 MQISTRTEDFVVDTL---KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 57
MQISTR +D+VVDTL + R+++ L EVF DPTK KV HGA DIVWLQRD G+Y+
Sbjct: 269 MQISTREKDWVVDTLTPWRHRLEI---LNEVFADPTKIKVFHGATSDIVWLQRDLGLYIV 325
Query: 58 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 117
+FDT A L+ SL YLL F +A+K+YQ ADWR+RPLP+EML YAR DTH+L
Sbjct: 326 GLFDTYFACDCLEYPARSLAYLLKKFVDFDADKKYQMADWRIRPLPEEMLYYARSDTHFL 385
Query: 118 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------------- 164
LY+YD+++ +L +E S+ L E Y V R+ E +L
Sbjct: 386 LYVYDMVRNEL------AEKSEKLLPEASLTGY-VLRRSKETSMLRHEVALCDPETGLGS 438
Query: 165 ----NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
NS + Y + LN+ Q AV + WRD +AR DES GYV+P R++ +IA+ L
Sbjct: 439 RGWLNSLMRTYSM----LNSSQFAVFKAIFRWRDDLARRLDESPGYVMPIRSVGDIARIL 494
Query: 221 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 276
P+ + LL + + M + +I+ + A+ ++ L+ E + AS+
Sbjct: 495 PSDRKAMWSLLNNAARETKSSMEEIFLLIQQAKLRGADGPSSSEFLRSEAVGAASK 550
>gi|195037619|ref|XP_001990258.1| GH19240 [Drosophila grimshawi]
gi|193894454|gb|EDV93320.1| GH19240 [Drosophila grimshawi]
Length = 911
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 141/221 (63%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT+D++ DTL LR + L V DP K++HG D DI WLQRD +Y+ NMF
Sbjct: 323 VQMSTRTKDYIFDTLILRDDMH-ILNLVLTDPKVLKILHGGDLDIEWLQRDLSLYIVNMF 381
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++ L L R SL +LL + ++ +K Q ADWR+RPLP +++ YAR+DTHYL+YI
Sbjct: 382 DTHRAAKALNLARLSLAFLLKFYLDMDVDKSLQLADWRMRPLPQKLIDYARQDTHYLIYI 441
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y+ + ++ + + + L VY++S D+C++ Y K + +S+L + +
Sbjct: 442 YERL---VNDLLQSEQGQSHSLRMVYQQSTDICKKRYTKPYIGPDSHLDLVRKTKRSFDN 498
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + G+ WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 499 RQLYALRGIFTWRDATARQEDESYGYVLPNHMMLQIAESLP 539
>gi|336467546|gb|EGO55710.1| hypothetical protein NEUTE1DRAFT_86290 [Neurospora tetrasperma FGSC
2508]
gi|350287803|gb|EGZ69039.1| hypothetical protein NEUTE2DRAFT_115146 [Neurospora tetrasperma
FGSC 2509]
Length = 825
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 166/318 (52%), Gaps = 13/318 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+V+DTL+ L EVF DP KV+HGA D++WLQRD G+Y+ +F
Sbjct: 269 MQISTREKDWVIDTLQPWRHKLEVLNEVFADPNIVKVLHGAFMDVIWLQRDLGLYVVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A VL SL YLL F A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI
Sbjct: 329 DTYHACAVLGYPGRSLGYLLSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN--------SYLHIYG 172
+D++ +L + L +V +RS DV Q YE LS N + ++
Sbjct: 389 FDMIINELVERSTPGKPKPDLLEQVLERSKDVALQRYEN--LSYNVETGQGPRGWYNVLL 446
Query: 173 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 232
N +Q AV + +WRD +AR +DES + + + L +IA+ LPT L +L
Sbjct: 447 KSPTLYNGEQFAVYKAVHQWRDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILD 506
Query: 233 SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP 292
S ++ ++ + +I+ + + N + K E +A + ++ D S IP
Sbjct: 507 SNAKGLKSHLDDLFDVIQKAKEEGVNGPKMMDIFKSESFVLAPAKIAAVIADDSD---IP 563
Query: 293 NVGRESVDGVDALVGTTM 310
+V D G T+
Sbjct: 564 DVKELKADRSQFWGGVTL 581
>gi|452835556|gb|AGG14045.1| exosome subunit RRP6p-like protein [Leishmania braziliensis]
Length = 735
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 152/256 (59%), Gaps = 4/256 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VD L+LR +G L VF +P KV+HGA DI WLQ+DF +YL N F
Sbjct: 274 MQISTREEDFIVDCLQLRSLMGT-LAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + SL + + HFC V NK++Q ADWRVRPL EM+ YAR+DTH+LLY+
Sbjct: 333 DTGVALQTLHMP-YSLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYV 391
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLN 179
YD +K L + + + L VYK S + QLYEK +++ E +Y G +GLN
Sbjct: 392 YDRLKALLLNSEGRAIVGNL-LVHVYKESKQLSLQLYEKPQVVPEETYKIALGRSLSGLN 450
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
Q V + WRD AR D+S VL +++ IA +LP TA +L R + +
Sbjct: 451 KVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVR 510
Query: 240 RYMGPVLSIIKNSMQN 255
+ ++ +K+++ N
Sbjct: 511 DNVALLVDFVKDAVAN 526
>gi|449310638|gb|AGE92546.1| exosome subunit RRP6p-like protein [Leishmania braziliensis]
Length = 735
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 152/256 (59%), Gaps = 4/256 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VD L+LR +G L VF +P KV+HGA DI WLQ+DF +YL N F
Sbjct: 274 MQISTREEDFIVDCLQLRSLMGT-LAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + SL + + HFC V NK++Q ADWRVRPL EM+ YAR+DTH+LLY+
Sbjct: 333 DTGVALQTLHMP-YSLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYV 391
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLN 179
YD +K L + + + L VYK S + QLYEK +++ E +Y G +GLN
Sbjct: 392 YDRLKALLLNSEGRAIVGNL-LVHVYKESKQLSLQLYEKPQVVPEETYKIALGRSLSGLN 450
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
Q V + WRD AR D+S VL +++ IA +LP TA +L R + +
Sbjct: 451 KVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVR 510
Query: 240 RYMGPVLSIIKNSMQN 255
+ ++ +K+++ N
Sbjct: 511 DNVALLVDFVKDAVAN 526
>gi|240254568|ref|NP_850189.5| RRP6-like protein 3 [Arabidopsis thaliana]
gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 891
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 140/241 (58%), Gaps = 17/241 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMF
Sbjct: 160 IQISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMF 218
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI
Sbjct: 219 DTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYI 278
Query: 121 YDIMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKEL--------LSENSYLH 169
D + +L + +S + D L E +RS C QLY KE S Y H
Sbjct: 279 ADSLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRH 338
Query: 170 IYGL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
+ G LNA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT +
Sbjct: 339 LNGHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEE 396
Query: 227 L 227
+
Sbjct: 397 I 397
>gi|154301232|ref|XP_001551029.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
Length = 823
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 157/269 (58%), Gaps = 11/269 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +D++VDTLK Q L EVF DP KV HGA DIVWLQRD G+Y+ +F
Sbjct: 264 MQVSTREKDWIVDTLKPWRQQLQVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLF 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A R L SL +LL + +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYI
Sbjct: 324 DTHYACRRLGFAGGSLAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYI 383
Query: 121 YDIMKIKLSSMPK-ESENSDTP----LTEVYKRSYDVCRQLYEKELLSENS------YLH 169
+D ++ +L P E+ +++TP + V ++S + YE++L + S +
Sbjct: 384 FDNLRNELLDAPDVETPDAETPAATSMDIVLQKSKETSLLRYERQLYNAESGKGPGGWFS 443
Query: 170 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
+ A L+++Q +V + WRD IAR DD+S +V+ N ++ +AK +P L
Sbjct: 444 LIYKTPALLSSEQFSVFKAVHAWRDQIARKDDDSINFVMSNSVVVNLAKFMPMDMIALLS 503
Query: 230 LLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
+++ ++ G +L +IK + +N +
Sbjct: 504 IIRPISHSVKSRTGELLEVIKAAKENGKD 532
>gi|347827584|emb|CCD43281.1| hypothetical protein [Botryotinia fuckeliana]
Length = 823
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 157/269 (58%), Gaps = 11/269 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +D++VDTLK Q L EVF DP KV HGA DIVWLQRD G+Y+ +F
Sbjct: 264 MQVSTREKDWIVDTLKPWRQQLQVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLF 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A R L SL +LL + +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYI
Sbjct: 324 DTHYACRRLGFAGGSLAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYI 383
Query: 121 YDIMKIKLSSMPK-ESENSDTP----LTEVYKRSYDVCRQLYEKELLSENS------YLH 169
+D ++ +L P E+ +++TP + V ++S + YE++L + S +
Sbjct: 384 FDNLRNELLDAPDVETPDAETPAATSMDIVLQKSKETSLLRYERQLYNAESGKGPGGWFS 443
Query: 170 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
+ A L+++Q +V + WRD IAR DD+S +V+ N ++ +AK +P L
Sbjct: 444 LIYKTPALLSSEQFSVFKAVHAWRDQIARKDDDSINFVMSNSVVVNLAKFMPMDMIALLS 503
Query: 230 LLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
+++ ++ G +L +IK + +N +
Sbjct: 504 IIRPISHSVKSRTGELLEVIKAAKENGKD 532
>gi|334184634|ref|NP_001189656.1| RRP6-like protein 3 [Arabidopsis thaliana]
gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 872
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 140/241 (58%), Gaps = 17/241 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMF
Sbjct: 160 IQISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMF 218
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI
Sbjct: 219 DTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYI 278
Query: 121 YDIMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKEL--------LSENSYLH 169
D + +L + +S + D L E +RS C QLY KE S Y H
Sbjct: 279 ADSLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRH 338
Query: 170 IYGL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
+ G LNA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT +
Sbjct: 339 LNGHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEE 396
Query: 227 L 227
+
Sbjct: 397 I 397
>gi|313233556|emb|CBY09728.1| unnamed protein product [Oikopleura dioica]
Length = 790
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 142/222 (63%), Gaps = 8/222 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS+R +D+++D L + + L EVF +P K+ HG+ D++WLQRDFG+Y+ N+F
Sbjct: 297 VQISSRQKDYILDPLAVWEDMYK-LNEVFANPKIVKIFHGSRNDMLWLQRDFGVYVVNLF 355
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++ L L + SL+YLL H+C + +K +Q ADWR+RP+P MLRYAR+DTHYLLY+
Sbjct: 356 DTFFAAKKLDLAKKSLDYLLQHYCKIRLDKRFQLADWRMRPIPPNMLRYARQDTHYLLYV 415
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLN 179
YD ++ L + E T E+++ S + YEK + E+ Y +Y + N
Sbjct: 416 YDRLRADLEKL----EFGAT--REIFRLSREFSLSKYEKPIFGESDYKKLYESKNRKKFN 469
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL + L WRD IAR +DEST YV+PN L+++++ LP
Sbjct: 470 NQQLKALELLYAWRDQIARFEDESTDYVIPNHILLQVSEILP 511
>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 892
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 142/244 (58%), Gaps = 22/244 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMF
Sbjct: 160 IQISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMF 218
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI
Sbjct: 219 DTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYI 278
Query: 121 YDIMKIKLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENS 166
D + +L + +E+S +P L E +RS C QLY KE S
Sbjct: 279 ADSLTTELKQLA--TEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSII 336
Query: 167 YLHIYGL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
Y H+ G LNA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT
Sbjct: 337 YRHLNGHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTT 394
Query: 224 AAKL 227
++
Sbjct: 395 TEEI 398
>gi|154336623|ref|XP_001564547.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061582|emb|CAM38612.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 735
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 151/256 (58%), Gaps = 4/256 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VD L+LR +G L VF +P KV+HGA DI WLQ+DF +YL N F
Sbjct: 274 MQISTREEDFIVDCLQLRSLMGT-LAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + SL + + HFC V NK++Q ADWRVRPL EM+ YAR+DTH+LLY+
Sbjct: 333 DTGVALQTLHMP-YSLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYV 391
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLN 179
YD +K L + + + L VYK S + QLYEK ++ E +Y G +GLN
Sbjct: 392 YDRLKALLLNSEGRAIVGNL-LVHVYKESKQLSLQLYEKPHVVPEETYKIALGRSLSGLN 450
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
Q V + WRD AR D+S VL +++ IA +LP TA +L R + +
Sbjct: 451 KVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVR 510
Query: 240 RYMGPVLSIIKNSMQN 255
+ ++ +K+++ N
Sbjct: 511 DNVALLVDFVKDAVAN 526
>gi|449304144|gb|EMD00152.1| hypothetical protein BAUCODRAFT_366269 [Baudoinia compniacensis
UAMH 10762]
Length = 774
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 140/236 (59%), Gaps = 10/236 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF +P+ KV+HGA D++WLQRD G+YL +F
Sbjct: 248 MQISTRNKDWIVDTLKPWRRKLSCLNEVFANPSILKVLHGAYMDVIWLQRDLGLYLVGLF 307
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A R L SL +LL F V+A K+YQ ADWR+RPLP E+L YAR DTHYLLYI
Sbjct: 308 DTHYACRALGYAGASLAFLLKKFANVDAQKQYQTADWRIRPLPQELLDYARSDTHYLLYI 367
Query: 121 YDIMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN------SYLHIY 171
+D M+ ++ S+ K D L +V ++S + Q YE + + + +
Sbjct: 368 FDNMRNELVQRSTFGKMDHEGDK-LWDVLQKSSETALQRYEHPVYDFDLGQGTVGWYKLL 426
Query: 172 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
A L+ +Q +V + WRD +AR D+S Y++ N + IAK +PTT A+L
Sbjct: 427 ARTSATLSKEQFSVFRAVHRWRDNVAREQDDSAHYIMSNHHIFSIAKSMPTTKAEL 482
>gi|156039491|ref|XP_001586853.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980]
gi|154697619|gb|EDN97357.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 808
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/264 (39%), Positives = 150/264 (56%), Gaps = 6/264 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK Q L EVF DP KV HGA DIVWLQRD G+Y+ +F
Sbjct: 264 MQISTREKDWIVDTLKPWRQQLQVLNEVFADPCIIKVFHGAYMDIVWLQRDLGLYVVGLF 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A R L L SL +LL + +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYI
Sbjct: 324 DTHYACRRLGLAGGSLAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYI 383
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQ 174
+D ++ +L P+ V ++S + YE+++ + S + +
Sbjct: 384 FDNLRNELIDASNTETPETNPMETVLEKSKETSLLRYERQVYNAESGKGPGGWFSLIYKT 443
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
A L+++Q AV + WRD IAR DD+S +V+ N +I +AK +P L +++
Sbjct: 444 PALLSSEQFAVFKAVHAWRDQIARKDDDSINFVMSNSVVINLAKFMPMDMIALLSIIRPI 503
Query: 235 HSYIERYMGPVLSIIKNSMQNAAN 258
++ +L IIK + +N +
Sbjct: 504 SYSVKSRTQELLEIIKAAKENGKD 527
>gi|302501205|ref|XP_003012595.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
CBS 112371]
gi|291176154|gb|EFE31955.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
CBS 112371]
Length = 1069
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 139/235 (59%), Gaps = 14/235 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +F
Sbjct: 471 MQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLF 530
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI
Sbjct: 531 DTFHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYI 590
Query: 121 YDIMKIKLSSMPKESENSDT--------PLTEVYKRSYDVCRQLYEKELL------SENS 166
+D ++ +L +P SE ++ + V +RS + Q YE+
Sbjct: 591 FDRLRNQLLELPPSSEEKESGPGGGGREAIEYVLERSKECALQRYERPTYDAATGRGSGG 650
Query: 167 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+ + L +Q AV L EWRD IARADDES VL R L +A+++P
Sbjct: 651 WHDMLSNSPVALTREQFAVFRALHEWRDRIARADDESPQTVLSKRALFRLAQEMP 705
>gi|346973710|gb|EGY17162.1| hypothetical protein VDAG_00844 [Verticillium dahliae VdLs.17]
Length = 804
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 143/256 (55%), Gaps = 6/256 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK L EVF DP KV HGA D+ WLQRD G+Y+ +F
Sbjct: 258 MQISTRDQDWIVDTLKPWRHQLEVLNEVFTDPKIVKVFHGAHMDMQWLQRDLGLYINGLF 317
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ +L + SL YLL F +A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI
Sbjct: 318 DTFFAAEILGYPQRSLAYLLKRFVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYI 377
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA---- 176
+D ++ +L S+ + +V ++S ++ YE + G G
Sbjct: 378 FDRIRNELLDASDRSKPETDIIQQVLQKSKELSLSRYEGLDFDPETGHGSRGWYGVLLKN 437
Query: 177 --GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
L+ +Q A + +WRD AR DESTGYVLPN + EIA+ +P A L L+
Sbjct: 438 PMPLSGKQFAAYRAIWKWRDDTARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHGN 497
Query: 235 HSYIERYMGPVLSIIK 250
+R +G + + K
Sbjct: 498 SIIAKRNVGEIWAAFK 513
>gi|340966615|gb|EGS22122.1| exosome complex exonuclease rrp6-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 859
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 146/258 (56%), Gaps = 6/258 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL L EVF DP KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 270 MQISTREKDWIVDTLVPWRHKLEILNEVFADPKIVKVLHGAFMDIIWLQRDLGLYIVGLF 329
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS VL SL YLL F +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYI
Sbjct: 330 DTYYASDVLGYPGKSLAYLLKRFADFDADKKYQLADWRIRPLPEEMFYYARSDTHFLLYI 389
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE------KELLSENSYLHIYGLQ 174
YD ++ +L+ + + P+ V KRS + Q YE + + + +
Sbjct: 390 YDHLRNELAELSAANHPDGKPIDRVIKRSKEESLQRYEHLTCDPETGIGARGWFNTLCKS 449
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
A N +Q AV + +WRD +AR +DES Y + + L +IA+ LP+ L LL
Sbjct: 450 PAAYNREQFAVYKAVHKWRDDLARREDESPQYFMTQQILADIARILPSDKKALWSLLNHN 509
Query: 235 HSYIERYMGPVLSIIKNS 252
++ Y+ + +I+ +
Sbjct: 510 AGVLKPYLDELFDLIQEA 527
>gi|313213333|emb|CBY37160.1| unnamed protein product [Oikopleura dioica]
Length = 689
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 142/222 (63%), Gaps = 8/222 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS+R +D+++D L + + L EVF +P K+ HG+ D++WLQRDFG+Y+ N+F
Sbjct: 297 VQISSRQKDYILDPLAVWEDMYK-LNEVFANPKIVKIFHGSRNDMLWLQRDFGVYVVNLF 355
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++ L L + SL+YLL H+C + +K +Q ADWR+RP+P MLRYAR+DTHYLLY+
Sbjct: 356 DTFFAAKKLDLAKKSLDYLLQHYCKIRLDKRFQLADWRMRPIPPNMLRYARQDTHYLLYV 415
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLN 179
YD ++ L + E T E+++ S + YEK + E+ Y +Y + N
Sbjct: 416 YDRLRADLEKL----EFGAT--REIFRLSREFSLSKYEKPIFGESDYKKLYESKNRKKFN 469
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL + L WRD IAR +DEST YV+PN L+++++ LP
Sbjct: 470 NQQLKALELLYAWRDQIARFEDESTDYVIPNHILLQVSEILP 511
>gi|326477901|gb|EGE01911.1| exosome complex exonuclease Rrp6 [Trichophyton equinum CBS 127.97]
Length = 824
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 147/266 (55%), Gaps = 9/266 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +F
Sbjct: 284 MQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLF 343
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI
Sbjct: 344 DTFHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYI 403
Query: 121 YDIMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIY 171
+D ++ +L +P ES + V +RS + Q YE+ + +
Sbjct: 404 FDRLRNQLLDLPSESGFGAGGREAIEYVLERSKECALQRYERPTYDAATGRGSGGWHDML 463
Query: 172 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
L +Q AV L EWRD ARADDES VL R L +A+++P + R+
Sbjct: 464 SNSPVALTREQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMG 523
Query: 232 KSKHSYIERYMGPVLSIIKNSMQNAA 257
+ + V +I+ + Q
Sbjct: 524 SPVSASLRSRTDEVAGLIREARQQGG 549
>gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum]
Length = 860
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 140/222 (63%), Gaps = 10/222 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST D+++D L L + L EVF DP KV HG+D D++WLQRDFG+Y+ N+F
Sbjct: 299 IQISTLDTDYIIDALALHDHLS-ILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLF 357
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A+R+L+ R SL YLL + +N NK+YQ ADWR+RPLP+E++ YAR DTHYLL+I
Sbjct: 358 DTGVAARLLQHGRFSLSYLLQRYVNINPNKKYQLADWRIRPLPNELIEYARTDTHYLLHI 417
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLN 179
S M +E ++ + L+ ++R+ +C + Y K + + YL +Y G + +
Sbjct: 418 -------ASRMCRELQDRNL-LSVTFERARQLCLKCYTKPVFNRLGYLDLYKQTGCSSFS 469
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+QL + L RD IAR +DES YVLPN L IA+ LP
Sbjct: 470 HRQLYALENLHALRDSIARREDESLHYVLPNHMLKVIAEVLP 511
>gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori]
gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori]
gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori]
Length = 451
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 142/222 (63%), Gaps = 5/222 (2%)
Query: 1 MQIST-RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QIST DF++D L +R + L VF DP K KV HGAD D++WLQRDFG+YL +
Sbjct: 166 IQISTDEGGDFIIDALAVREHIHK-LNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGL 224
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A++ L L SL++LL +CGV+ +K Y+ ADWR+RPLPD +++YAR DTHYLLY
Sbjct: 225 FDTYHAAKSLGLPALSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLY 284
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
++ +MK + + +++ L V++ S C Y KE++ + S++ +Y +
Sbjct: 285 VWRVMK---NQIIEKNAGQTNMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFD 341
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQ+A + L +WRD AR DEST Y+LPN L+ +++ LP
Sbjct: 342 NQQMAALKMLYKWRDSQARQLDESTTYLLPNHMLLSLSENLP 383
>gi|449548764|gb|EMD39730.1| hypothetical protein CERSUDRAFT_112032 [Ceriporiopsis subvermispora
B]
Length = 850
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 172/327 (52%), Gaps = 48/327 (14%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR DF+VD L++R ++ L EV DP KV+HGA+ DIVWLQ+DF +Y+ N+F
Sbjct: 281 MQISTRERDFIVDVLQVREEM-EELNEVLTDPRIVKVLHGAESDIVWLQQDFNLYVVNLF 339
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+VL+ R++L LL +C +K YQ ADWR+RPLP+EML+YAR DTH+LLYI
Sbjct: 340 DTYHASKVLEFPRHNLGTLLEMYCDFTPDKRYQLADWRIRPLPEEMLQYARSDTHFLLYI 399
Query: 121 YDIMKIKL--------------SSMPKESENSDTP-----LTEVYKRSYDVCRQLYEKEL 161
YD ++ L +S P +DT + EV RS ++YEKE
Sbjct: 400 YDNLRNALLDRAQSRAQSPSASASTPPSPAGADTDPAHALVREVLARSATTALRVYEKER 459
Query: 162 LSENSYLHIYG-----------------LQGA--GLNAQQLAVVAGLCEWRDVIARADDE 202
+ L G + GA + Q AV + WRD ++RA+DE
Sbjct: 460 YDPDQGLGPGGWDTLARKWNKGALVAPPVHGADSAVARTQRAVYRAVHAWRDRVSRAEDE 519
Query: 203 STGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN--FE 260
ST YVLPN L +A++ P A L L + + R +L ++ +++ A E
Sbjct: 520 STRYVLPNHALFALAERTPADMAALLALFRPVPPVVRRRAQELLDTVRAAVKEALGGPVE 579
Query: 261 VIAQKLKEE-------RMEVASEETEV 280
V A ++ E R EV +E EV
Sbjct: 580 VPATEVVETEKVDSDVREEVDTEAVEV 606
>gi|367031894|ref|XP_003665230.1| hypothetical protein MYCTH_2308740 [Myceliophthora thermophila ATCC
42464]
gi|347012501|gb|AEO59985.1| hypothetical protein MYCTH_2308740 [Myceliophthora thermophila ATCC
42464]
Length = 860
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/274 (36%), Positives = 154/274 (56%), Gaps = 6/274 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL L EVF DP KV+HGA D++WLQRD G+Y+ +F
Sbjct: 268 MQISTREKDWIVDTLVPWRHKLEVLNEVFADPKIVKVLHGAFMDVIWLQRDLGLYIVGLF 327
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS L SL +LL F +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYI
Sbjct: 328 DTFYASDTLGYAGKSLAFLLKKFADFDADKKYQLADWRIRPLPEEMFYYARSDTHFLLYI 387
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL-- 178
YD+++ +L+ + ++ P+ V ++S +V Q YE + + G +
Sbjct: 388 YDMLRNELAELASQNNPDGNPIDRVIQKSKEVSLQRYEHPVCDPETGAGNRGWYNTLIKS 447
Query: 179 ----NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
N +Q AV + +WRD +AR +DES +++ + L +IA+ +PT L LL+S
Sbjct: 448 PTLYNGEQFAVYKAVHKWRDDVARQEDESPFFIMTQQVLSDIARIIPTDMKALWSLLESN 507
Query: 235 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKE 268
++ + + +I+ + N + Q +E
Sbjct: 508 ARGLKGRLEELFQVIQEARARGVNGPTMLQFFRE 541
>gi|336369802|gb|EGN98143.1| hypothetical protein SERLA73DRAFT_91376 [Serpula lacrymans var.
lacrymans S7.3]
gi|336382569|gb|EGO23719.1| hypothetical protein SERLADRAFT_450051 [Serpula lacrymans var.
lacrymans S7.9]
Length = 879
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 175/329 (53%), Gaps = 35/329 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VDTL LR ++ L EVF DP KV HGA+ DIVWLQ+DF +Y+ N+F
Sbjct: 285 MQISTRDEDFIVDTLALREELSE-LNEVFTDPRIVKVFHGAESDIVWLQQDFNLYIVNLF 343
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + ++ L LL +C +K+YQ ADWR+RPLPDEML YAR DTHYLL+I
Sbjct: 344 DTFHASKAIGFPKHGLASLLEMYCDFTPDKQYQLADWRMRPLPDEMLAYARSDTHYLLFI 403
Query: 121 YDIMKIKLSSMPK------ESENSDTP--------LTEVYKRSYDVCRQLYEKELLSENS 166
YD ++ L + + ++E+S P + +V RS + ++YE+EL
Sbjct: 404 YDNLRNALIDLAQSRAQSSQNESSSGPAADPAHALIRQVLFRSEETALRVYERELYDAED 463
Query: 167 YLHIYGLQGAGLNAQQLAVVA------------GLCEWRDVIARADDESTGYVLPNRTLI 214
G G + ++A + WRD ++R +DEST YVLPN L
Sbjct: 464 GSGPGGWDGLARKWNKGTLMASARGSVRQEVYRSVHAWRDRVSREEDESTRYVLPNHYLF 523
Query: 215 EIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ--NAANFEVIAQKLKEERME 272
++A+Q P+ L + I R +L +++++ +N +I E+ E
Sbjct: 524 QLAEQPPSDMPALLAFFQHVPPVIRRRAKELLDSVRDAVARYGGSNATLI------EKTE 577
Query: 273 VASEETEVLVLDTSSNLKIPNVGRESVDG 301
+ + ++ D S + +G+ +V+
Sbjct: 578 SITISEDTVITDLPSPNIVDQIGKPAVEA 606
>gi|302415657|ref|XP_003005660.1| 3'-5' exonuclease domain-containing protein [Verticillium
albo-atrum VaMs.102]
gi|261355076|gb|EEY17504.1| 3'-5' exonuclease domain-containing protein [Verticillium
albo-atrum VaMs.102]
Length = 894
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 144/256 (56%), Gaps = 6/256 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK L EVF +P KV HGA D+ WLQRD G+Y+ +F
Sbjct: 309 MQISTRDQDWIVDTLKPWRHQLEVLNEVFTNPKIVKVFHGAHMDMQWLQRDLGLYINGLF 368
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ +L + SL YLL F +A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI
Sbjct: 369 DTFFAAEILGYPQRSLAYLLKRFVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYI 428
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA---- 176
+D ++ +L S+ + +V ++S ++ YE + G G
Sbjct: 429 FDRIRNELLDASDRSKPETDIIQQVLQKSKELSLSRYEGLDFDPETGHGSRGWYGVLLKN 488
Query: 177 --GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
L+ +Q A + +WRD AR DESTGYVLPN + EIA+ +P A L L+ S
Sbjct: 489 PMPLSGKQFAAYRAIWKWRDDTARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHSN 548
Query: 235 HSYIERYMGPVLSIIK 250
+R +G + + K
Sbjct: 549 SIIAKRNVGEIWAAFK 564
>gi|393243266|gb|EJD50781.1| hypothetical protein AURDEDRAFT_159928 [Auricularia delicata
TFB-10046 SS5]
Length = 837
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 154/261 (59%), Gaps = 10/261 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR ED+VVD L +R +V P L EVF D KV HGA+ DIVWLQ+DF +Y+ N+F
Sbjct: 295 MQISTREEDWVVDLLAVREEV-PKLAEVFADENIVKVFHGAESDIVWLQQDFSLYIVNLF 353
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+VL+ ++SL LL + +K YQ ADWR+RP+P EML YAR DTH+LL+I
Sbjct: 354 DTYHASKVLEFPKHSLASLLEAYTDFTPDKRYQLADWRIRPIPAEMLLYARSDTHFLLHI 413
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQ 174
YD K++ + + S +D + EV +RS + + Y E N + +
Sbjct: 414 YD--KLRELLLQRSSGTADL-IREVLRRSEETALRTYVLETYDTQRGSGANGWEILAKKW 470
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
GL+ LAV + EWRD +AR DEST YV+ N +L ++A PT A+L L
Sbjct: 471 NKGLHGLPLAVYKAVHEWRDTVARTTDESTRYVMGNSSLFKLADAQPTDMAQLTAALHPM 530
Query: 235 HSYIERYMGPVLSIIKNSMQN 255
+ + + +L++I ++++
Sbjct: 531 SAIVRKRGKDLLNVISRAVKD 551
>gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
Length = 882
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 144/247 (58%), Gaps = 9/247 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP+ KV HGA D+VWLQRD G+Y+ +F
Sbjct: 262 MQISTREKDWIVDTLKPWREQLQVLNEVFADPSIIKVFHGAFMDMVWLQRDLGLYVNGLF 321
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A VL + SL +LL F +A+K+YQ ADWRVRPL +EML YAR DTHYLLYI
Sbjct: 322 DTGMACEVLHYPQKSLAFLLKKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYLLYI 381
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS------YLHIYGL 173
YD M+ +L M + N T E ++S + Y E + + +
Sbjct: 382 YDKMRNELV-MKSDRGNPSTDYIEATLQKSKTLSLSRYGGETFDPKTGKGNKGWYNTLLR 440
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 233
+ QQ AV + WRD +AR +DEST +V+PN + +IAK +P A L L+ +
Sbjct: 441 HPMPFSGQQFAVYRAIWAWRDEVARREDESTPFVMPNAIIGDIAKHMPPDAKALHALIPN 500
Query: 234 KHSYIER 240
H++I R
Sbjct: 501 -HAFIAR 506
>gi|336273270|ref|XP_003351390.1| hypothetical protein SMAC_03697 [Sordaria macrospora k-hell]
gi|380092911|emb|CCC09664.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 821
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 165/316 (52%), Gaps = 9/316 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+V+DTL+ L EVF DP KV+HGA D +WLQRD G+YL +F
Sbjct: 269 MQISTREKDWVIDTLQPWRHKLEVLNEVFADPKIVKVLHGAFMDAIWLQRDLGLYLVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A VL SL YLL F A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI
Sbjct: 329 DTYHACAVLGYPGRSLGYLLSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL-- 178
YD++ +L + L +V +RS DV Q YE + + + G L
Sbjct: 389 YDMLVNELIERSTPGKPKPDLLEQVLERSKDVALQRYENPSYNVETGMGPRGWYNVLLKS 448
Query: 179 ----NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
N++Q AV + +WRD +AR +DES + + + L +IA+ LPT L +L S
Sbjct: 449 PTLYNSEQFAVYKAVHQWRDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSN 508
Query: 235 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNV 294
++ ++ + +I+ + + + + K + +A + ++ D S IP+V
Sbjct: 509 AKGLKSHLDHLFDVIQKAREEGVDGPKMMDIFKSDSSIIAPSKRAAVISDDSD---IPDV 565
Query: 295 GRESVDGVDALVGTTM 310
D G T+
Sbjct: 566 KELKADRSQFWGGVTL 581
>gi|268532256|ref|XP_002631256.1| C. briggsae CBR-CRN-3 protein [Caenorhabditis briggsae]
Length = 868
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR EDF++D + ++G L E F +P KV HG+D D++WLQRDFG+++ N+F
Sbjct: 312 IQISTRDEDFIIDPFPMWDRIG-ILNEPFTNPNILKVFHGSDNDVLWLQRDFGVHVVNLF 370
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY
Sbjct: 371 DTYVAMKKLKYPKFSLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYS 430
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+++ +L + L VY S D+C ++Y+K + + Y+ + LN
Sbjct: 431 YDMLREQL------LQQGHKDLENVYAESNDLCIRVYKKPVFNPKGYMTEIKFRFT-LNN 483
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+Q + L WRD++ARA+DES +VLPN L+ +A+ LP + ++++
Sbjct: 484 RQDFALTSLYRWRDIVARAEDESPQFVLPNHMLLSLAETLPRDVGGIYVCCNPLPYFVKQ 543
Query: 241 YMGPVLSII 249
G +L I+
Sbjct: 544 RTGDILKIM 552
>gi|17531757|ref|NP_496283.1| Protein CRN-3, isoform a [Caenorhabditis elegans]
gi|3874231|emb|CAA90108.1| Protein CRN-3, isoform a [Caenorhabditis elegans]
gi|31747255|gb|AAP57299.1| cell death-related nuclease 3 [Caenorhabditis elegans]
Length = 876
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR EDF++D + VG L E F +P KV HG+D D++WLQRD+G+++ N+F
Sbjct: 319 IQISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVFHGSDSDVLWLQRDYGVHVVNLF 377
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY
Sbjct: 378 DTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYS 437
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+++ +L + +++++ L VY S D+C ++Y+K + + YL + LN
Sbjct: 438 YDMLREQL--LKQDTKD----LANVYSESSDLCIKVYKKPVFNPKGYLTEIKFRFT-LNT 490
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+Q + L +WRDV+ARA+DES +VLPN ++ +++ LP + ++++
Sbjct: 491 RQDYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQ 550
Query: 241 YMGPVLSII 249
G +L II
Sbjct: 551 RTGDILKII 559
>gi|85094529|ref|XP_959900.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
gi|28921357|gb|EAA30664.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
gi|40804632|emb|CAF05892.1| related to nucleolar 100K polymyositis-scleroderma protein
[Neurospora crassa]
Length = 822
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 166/318 (52%), Gaps = 13/318 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+V+DTL+ L EVF +P KV+HGA D++WLQRD G+Y+ +F
Sbjct: 269 MQISTREKDWVIDTLQPWRHKLEVLNEVFANPNIVKVLHGAFMDVIWLQRDLGLYVVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A VL SL YLL F A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI
Sbjct: 329 DTYHACAVLGYPGRSLGYLLSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN--------SYLHIYG 172
+D++ +L + L +V +RS DV Q YE LS N + ++
Sbjct: 389 FDMIINELVERSTPGKPKPDLLEQVLERSKDVALQRYEN--LSYNVETGQGPRGWYNVLL 446
Query: 173 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 232
N +Q AV + +WRD +AR +DES + + + L +IA+ LPT L +L
Sbjct: 447 KSPTLYNGEQFAVYKAVHQWRDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILD 506
Query: 233 SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP 292
S ++ ++ + +I+ + + N + K E +A + ++ D S IP
Sbjct: 507 SNAKGLKSHLDDLFDVIQKAREEGVNGPKMMDIFKSESSILAPAKIAAVIADDSD---IP 563
Query: 293 NVGRESVDGVDALVGTTM 310
+V D G T+
Sbjct: 564 DVKELKADRSQFWGGVTL 581
>gi|63054485|ref|NP_593004.2| exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|6226742|sp|Q10146.2|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName:
Full=Ribosomal RNA-processing protein 6
gi|159883898|emb|CAA93168.2| exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)
[Schizosaccharomyces pombe]
Length = 777
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 154/263 (58%), Gaps = 21/263 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D++VDTL+LR ++ L VF +P KV HGA DI+WLQRDFG+Y+ N+F
Sbjct: 259 MQISNREKDWIVDTLELREELEA-LNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLF 317
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++VL E + L +LL +C +A+K YQ ADWR+RPLP EML+YA+ DTHYLLYI
Sbjct: 318 DTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYI 377
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
+D ++ +L S K +E + + V+ S + + YE E Y IYGL G
Sbjct: 378 WDHLRNELIS--KSAERKENLMQSVFNSSKQISLRKYELE-----PYDPIYGLGTDGWRN 430
Query: 178 ----------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + L + L +WRD +AR +DES YVLPNR LI IA P AA +
Sbjct: 431 VLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADV 490
Query: 228 RRLLKSKHSYIERYMGPVLSIIK 250
+ K Y+ ++ +++
Sbjct: 491 FSISKQLTPIARMYVEDIVKVVQ 513
>gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 881
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 150/256 (58%), Gaps = 4/256 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+RT+D++VD + + L V D KV+HGAD DI WLQRDFGIY+ N+F
Sbjct: 285 MQISSRTKDYIVDVFSVWKSLHK-LNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLF 343
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+R L + +L YLL V +K+YQ ADWR+RPLP EM+ YAR DTHYLL I
Sbjct: 344 DTGQAARTLSMPSYALAYLLQSISKVPTDKKYQLADWRIRPLPREMISYARSDTHYLLSI 403
Query: 121 YDIMKIKLSSMP-KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
YD ++I+L S ++ +N+ + V +S +C + Y K +L + Y I Q L+
Sbjct: 404 YDNLRIQLVSKALQQGQNASHFIESVLNKSRAICLKKYVKPILDDEKYHSILQNQRIILS 463
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
++ ++ L EWR +A DE+ +VL N L I +LP T + K SY+
Sbjct: 464 DRKFRILKRLLEWRYKMAAKYDENPTFVLANDILFNIVNRLPQTQKEFAS-SNLKLSYVC 522
Query: 240 RYMG-PVLSIIKNSMQ 254
+Y +LSIIK ++
Sbjct: 523 QYHANEILSIIKEEIE 538
>gi|407923871|gb|EKG16934.1| hypothetical protein MPH_05915 [Macrophomina phaseolina MS6]
Length = 817
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 146/274 (53%), Gaps = 10/274 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HGA D +WLQRD G+YL +F
Sbjct: 260 MQISTRNKDWIVDTLKPWRRRLQALNEVFTDPHILKVLHGAYMDAIWLQRDLGLYLVGLF 319
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L SL +LL F NA K+YQ ADWR+RPLP E+ YAR DTH+LLYI
Sbjct: 320 DTHHAARALGYSGGSLAFLLQKFIHFNAQKQYQTADWRMRPLPQELFDYARSDTHFLLYI 379
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA---- 176
YD M+ +L + + V ++S + Q YE + G A
Sbjct: 380 YDNMRNELVDKSSFDDPEQDRVLRVLEKSKETALQTYENPIYDAKEGSGPMGWYKALYRN 439
Query: 177 --GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
N +Q +V + +WRD +AR +DEST YV+ N L +A+ +P A L + +
Sbjct: 440 PNAFNKEQFSVFKAVHQWRDTVARQEDESTHYVMANHALFSVARSIPLDKAALFNVAQPI 499
Query: 235 HSYIERYMGPVLSIIKNSMQNAAN----FEVIAQ 264
+ ++ II + + A+ +EV A+
Sbjct: 500 SPIVRLRADELVGIITRAKEAGADGPEMWEVFAK 533
>gi|327308500|ref|XP_003238941.1| exosome component 3'-5' exonuclease [Trichophyton rubrum CBS
118892]
gi|326459197|gb|EGD84650.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
Length = 867
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 150/273 (54%), Gaps = 16/273 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +F
Sbjct: 284 MQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLF 343
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI
Sbjct: 344 DTFHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYI 403
Query: 121 YDIMKIKL----SSMPKESENSDT------PLTEVYKRSYDVCRQLYEKELL------SE 164
+D ++ +L SS P+E + S + V +RS + Q YE+
Sbjct: 404 FDRLRNQLLESPSSSPEEKQESGLGGGGREAIEYVLERSKECALQRYERPTYDAATGRGS 463
Query: 165 NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 224
+ + L +Q AV L EWRD ARADDES VL R L +A+++P
Sbjct: 464 GGWHDMLSNSPVALTREQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDK 523
Query: 225 AKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 257
+ R+ + + V +I+ + Q
Sbjct: 524 FAVLRMGSPVSASLRSRTDEVAGLIREARQQGG 556
>gi|388579133|gb|EIM19461.1| hypothetical protein WALSEDRAFT_61456 [Wallemia sebi CBS 633.66]
Length = 789
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 153/265 (57%), Gaps = 11/265 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R EDF++DTL+LR Q+ L + F +P KV HGAD DIVWLQRDFG+Y+ NMF
Sbjct: 244 MQISIRGEDFIIDTLELRDQLIK-LNDTFTNPAIVKVFHGADSDIVWLQRDFGVYIVNMF 302
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++VL ++SL LL FCG +K YQ ADWR RPL ++ML YAR DTHYLLYI
Sbjct: 303 DTYHATKVLGFSQHSLASLLIKFCGYTPDKRYQRADWRKRPLTNKMLEYARSDTHYLLYI 362
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD+++ L + K S+ +D L +V +RS V + + ++ ++ G
Sbjct: 363 YDMLRNTL--IEKSSKKNDM-LKDVLQRSEQVSLKTHHRDPYDYDTGKGFGGWYNLATKW 419
Query: 181 QQ------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ L V L +WRD IAR +DES + N L ++A + P T ++ + + K
Sbjct: 420 NKVVEPPLLEVFRRLHQWRDQIARKEDESVHVIFSNHQLYDLALKQPKTPQEITNVFQKK 479
Query: 235 -HSYIERYMGPVLSIIKNSMQNAAN 258
++ ++ V I + ++ A N
Sbjct: 480 VPQFVRIHLKDVAQCINSGVEFAKN 504
>gi|426195548|gb|EKV45477.1| hypothetical protein AGABI2DRAFT_186278 [Agaricus bisporus var.
bisporus H97]
Length = 870
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 156/287 (54%), Gaps = 34/287 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDFVVD + LR ++ L EVF DP KV HGA+ DIVWLQ+DF +Y+ N+F
Sbjct: 303 MQISTREEDFVVDVIALRDEM-EVLNEVFTDPKIVKVFHGAESDIVWLQQDFNLYVVNLF 361
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS++L+ R+ L LL +C +K YQ ADWR+RPLP EML YAR DTH+LL+I
Sbjct: 362 DTYHASKLLEFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPKEMLEYARSDTHFLLFI 421
Query: 121 YDIMKIKL-------SSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG 172
YD ++ L S P S+N + V RS + C ++Y KE+ +S G
Sbjct: 422 YDNLRNALLDRGGPASRSPHASKNPLHASINHVLTRSSETCLRVYVKEVYDRSSGTGSNG 481
Query: 173 L------------------------QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 208
+G + Q AV + WR+ ++R +DEST YVL
Sbjct: 482 WDTLARKWNKPLFTALSFSYQSSSDEGHSVPEMQKAVYRAVHWWRESVSREEDESTRYVL 541
Query: 209 PNRTLIEIAKQLPTTAAKLRRLLKSK-HSYIERYMGPVLSIIKNSMQ 254
PN+ L IA+ P L RL S ++R +L +++++++
Sbjct: 542 PNQYLFRIAEAPPGDLGNLLRLFGSSVPVVVKRRAKELLDVVRDAVK 588
>gi|406862035|gb|EKD15087.1| putative exosome complex exonuclease Rrp6 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 804
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 152/268 (56%), Gaps = 14/268 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK Q L EVF DP KV HGA DIVWLQRD G+Y+ +F
Sbjct: 284 MQISTREKDWIVDTLKPWRQNLQVLNEVFADPKIIKVFHGAFMDIVWLQRDLGLYVVGLF 343
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L SL +LL F +A+K+YQ ADWR+RPLP EM YAR DTH+LLYI
Sbjct: 344 DTHHASRALGYSGASLAFLLKKFIDFDADKQYQMADWRIRPLPAEMFFYARADTHFLLYI 403
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL----YEKELLSENS------YLHI 170
+D+++ +L + NS+ P + + C++ +E+++ + +S +
Sbjct: 404 FDMVRNELI----DRSNSEVPDENRLEITLQKCKETSLLRFERQVYNTDSGKGPGGWFSQ 459
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ L+ +Q AV + WRD IAR DD+S +VLP ++ +AK +P + L
Sbjct: 460 LNKTPSLLSNEQFAVFRAVHGWRDKIARIDDDSPTFVLPQHAVLTLAKLMPMDMVGVLGL 519
Query: 231 LKSKHSYIERYMGPVLSIIKNSMQNAAN 258
+KS ++ +L +IK++ N
Sbjct: 520 IKSGSHSVKSRAAELLDVIKSAKAQGKN 547
>gi|321465482|gb|EFX76483.1| hypothetical protein DAPPUDRAFT_226045 [Daphnia pulex]
Length = 544
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 165/304 (54%), Gaps = 36/304 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+++DTL+L + P L +VF DP K+ GAD D++WLQRDFGIY+ N+F
Sbjct: 138 MQISTDKTDYIIDTLQLWDHLQP-LNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLF 196
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+ +L ++ L +LL H+C V+ NK+YQ ADWR+RPLP EM++YAREDTHYL+YI
Sbjct: 197 DTLQAASLLGFQKKGLYFLLQHYCQVHVNKKYQLADWRIRPLPQEMVKYAREDTHYLIYI 256
Query: 121 YDIMKIKLSS----------------MPKESENSD--------TPLTE--------VYKR 148
Y+ MK L S P+E ++ TP+ E V+
Sbjct: 257 YERMKQDLYSRHCLGDVKITPEMKKGTPEEPKDRKSKSKSSQITPVNEKGVNQVLQVWNN 316
Query: 149 SYDVCRQLYEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 206
S VC + Y + L E + + +G N QQ + + WRD +AR DES Y
Sbjct: 317 SRSVCLKQYRIQTLEEMYSKFYSSLNKEGKKFNNQQSYALQEIFSWRDRVARELDESPHY 376
Query: 207 VLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKL 266
V+ ++ I QL + + + S+H ++ +++ + +I + A I++K
Sbjct: 377 VMTKFNMLNIISQLHNQPENILQPI-SRHRFVHQHLPQLHEVIVKAKAIAIQSSPISKKQ 435
Query: 267 KEER 270
++R
Sbjct: 436 TKKR 439
>gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Komagataella pastoris
GS115]
gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Komagataella pastoris
GS115]
gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Komagataella pastoris CBS 7435]
Length = 717
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 155/275 (56%), Gaps = 32/275 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLKLR ++ P L +VF DP+ KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 253 MQISTRNQDYIVDTLKLRFKLQP-LNKVFTDPSIVKVFHGAFMDIIWLQRDLGLYVVSLF 311
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS++L ++SL YLL + +K+YQ ADWRVRPL +L YAR DTH+LLYI
Sbjct: 312 DTFHASKLLGFPKHSLAYLLETYAKFKTSKKYQLADWRVRPLTKPLLAYARSDTHFLLYI 371
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN--------------- 165
+D +L++M ES L++V S V + +E N
Sbjct: 372 FD----QLNNMLIESGK----LSQVLYDSRQVALRRFEYTKFRPNFPTPLVVSPLNDRKE 423
Query: 166 ---SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
L++Y + + + V L WRD IAR DDEST YVLPN+ L I PT
Sbjct: 424 PWKQLLYLYNIPRS-----RQPVFIALYNWRDEIAREDDESTRYVLPNQLLATITSISPT 478
Query: 223 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 257
+ L + Y+++Y ++ IIK++++ A
Sbjct: 479 DVSSLMSCSNIRTPYLKKYATELVEIIKSTLKEGA 513
>gi|242218119|ref|XP_002474853.1| predicted protein [Postia placenta Mad-698-R]
gi|220725980|gb|EED79945.1| predicted protein [Postia placenta Mad-698-R]
Length = 882
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 156/304 (51%), Gaps = 58/304 (19%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR ED+VVDTL +R ++ L EVF D KV+HGA+ DIVWLQ+DF +Y+ N+F
Sbjct: 288 MQLSTREEDWVVDTLAVRDEMEA-LNEVFTDSQIVKVLHGAESDIVWLQQDFNLYIVNLF 346
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+VL R+SL LL +C A+K YQ ADWR+RPLP+EML YAR DTH+LLYI
Sbjct: 347 DTYHASKVLDFPRHSLATLLEMYCDFTADKRYQLADWRIRPLPEEMLAYARSDTHFLLYI 406
Query: 121 YDIMKIKL-------------------------SSMPKESENSDTPLTEVYKRSYDVCRQ 155
YD ++ L S +P + + + V RS + +
Sbjct: 407 YDNLRNALLDRAQSRTQSRAQSPSASAPASKPGSPLPTSGNPAHSLVRLVLSRSEETALR 466
Query: 156 LYEKELLSE---------------NSYLHIYGLQ--GAGLNAQQLAVVAGLCEWRDVIAR 198
+YEKE N I Q +G A Q AV + WRD IAR
Sbjct: 467 VYEKETYDAEGSGPGGWDTLARKWNKGALIASAQEPTSGPLAMQRAVYRCVHAWRDRIAR 526
Query: 199 ADDESTGYVLPNRTLIEIAKQLPTTAAKL---------------RRLLKSKHSYIERYMG 243
+DEST Y+LPN L +A++ P A L R LL + ++R +G
Sbjct: 527 EEDESTRYILPNHYLFILAERPPADMAALLSTFQPVPPVVRRRGRELLDAIRDAVKRTLG 586
Query: 244 PVLS 247
P LS
Sbjct: 587 PELS 590
>gi|395329712|gb|EJF62098.1| hypothetical protein DICSQDRAFT_59413 [Dichomitus squalens LYAD-421
SS1]
Length = 861
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 169/330 (51%), Gaps = 51/330 (15%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDFVVDTL LR ++ L EVF DP KV+HGA+ DIVWLQ+DF +Y+ N+F
Sbjct: 277 MQISTRDEDFVVDTLALREELE-ELNEVFTDPNIVKVLHGAESDIVWLQQDFNLYIVNLF 335
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+VL R+ L LL +C A+K YQ ADWR+RPLP EML+YAR DTH+LL+I
Sbjct: 336 DTYHASKVLDFPRHGLASLLEMYCDFTADKRYQLADWRIRPLPKEMLQYARSDTHFLLFI 395
Query: 121 YDIMKIKLSSMPKESENS---------------------DTPLTEVYKRSYDVCRQLYEK 159
YD ++ L + S + EV RS + ++YEK
Sbjct: 396 YDNLRNALLDRAQSRAQSRAQSPSSPTSTPPPDPSIPPAHVLVREVLSRSEETALRVYEK 455
Query: 160 ELLSE----------------NSYLHIYGL----QGAGLNAQQLAVVAGLCEWRDVIARA 199
E+ N L I + GA +N Q+ AV + WRD IAR
Sbjct: 456 EIYDAEFGLGPGGWDTMARKWNKTLLIGSMAETNTGAAVNVQR-AVYRAVHAWRDKIARE 514
Query: 200 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA-- 257
+DEST YVLPN + +A++ P A L + S I R +L I+++++ A
Sbjct: 515 EDESTRYVLPNHYIFSLAERTPADMAALLSVFHPVPSVIRRRAKELLDAIRDAVKGALGS 574
Query: 258 ------NFEVIAQKLKEERMEVASEETEVL 281
EV A EE M V T V+
Sbjct: 575 GSTTERGAEVTASVEGEEIMSVDDPLTTVV 604
>gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia]
Length = 669
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 153/257 (59%), Gaps = 8/257 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT+D+++D L Q+G L VF +P KV HGAD D+ WLQRDFG+Y+ N+F
Sbjct: 239 IQLSTRTQDYIIDPFPLWKQLGDMLSVVFTNPRIVKVFHGADNDVQWLQRDFGLYIVNLF 298
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QAS+ L L +NS ++LL +C + +K YQ ADW RPL DEM++YA+ DTHYLLYI
Sbjct: 299 DTFQASKELLLMQNSFQFLLSEYCKKSTDKTYQTADWTQRPLSDEMIKYAQIDTHYLLYI 358
Query: 121 YDIMKIKLSSMPKESEN-SDTP---LTEVYKRSYDVCRQLYEKELLSENSYLH-IYGLQG 175
YD M+ L + K +EN ++ P + V KRS D ++Y+K L ++ L I Q
Sbjct: 359 YDRMRQDLKKLNKPNENLNNVPNYYIESVLKRSKDTALKIYKKPLQDQDQSLQTILNKQD 418
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL---K 232
+ A+ ++ L E R+ + D++ Y LPN L ++ + PT+ +L+ L K
Sbjct: 419 RRMEAKNFDLMVKLLELREELGIQYDQNPRYFLPNPFLFKLVESKPTSIQELKSQLGGDK 478
Query: 233 SKHSYIERYMGPVLSII 249
H I+ + L I+
Sbjct: 479 YIHEIIKENLWQFLKIL 495
>gi|171679581|ref|XP_001904737.1| hypothetical protein [Podospora anserina S mat+]
gi|170939416|emb|CAP64644.1| unnamed protein product [Podospora anserina S mat+]
Length = 628
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 134/240 (55%), Gaps = 12/240 (5%)
Query: 1 MQISTRTEDFVVDTL---KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 57
MQISTR +D++VDTL + R++V L EVF DP KV HGA D+VWLQRD G+Y+
Sbjct: 49 MQISTREKDWIVDTLVPWRHRLEV---LNEVFADPGIVKVFHGAFMDVVWLQRDLGVYVV 105
Query: 58 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 117
+FDT AS VL SL +LL F G A+K +Q ADWR+RPLP EML YAR DTHYL
Sbjct: 106 GLFDTHHASTVLGYGGGSLAFLLKKFVGFEADKRWQLADWRIRPLPAEMLYYARADTHYL 165
Query: 118 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL---- 173
LY+YD+++ L++ P+ V +S YE E + L G
Sbjct: 166 LYVYDMIRNDLAAAAHTVHPDGKPIERVIAKSKKTALSRYENPAFDEETGLGDRGWYNYL 225
Query: 174 --QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
N ++ AV L WRD AR +DESTG+V+ + EI + +P+ L LL
Sbjct: 226 ARSSYVYNKEEFAVFRALWNWRDKTAREEDESTGFVMKEHVMAEIVRVMPSDKKALWSLL 285
>gi|296815198|ref|XP_002847936.1| exosome component 3'-5' exonuclease [Arthroderma otae CBS 113480]
gi|238840961|gb|EEQ30623.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
113480]
Length = 810
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 153/269 (56%), Gaps = 21/269 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +F
Sbjct: 287 MQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLF 346
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ +L+L + SL++LL + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI
Sbjct: 347 DTFHAASMLQLPKKSLKFLLQQYVGFDADKQYQTADWRIRPLLPGMLDYARSDTHFLLYI 406
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
+D ++ +L E+ D + V +RS + Q YE+ +Y + G G
Sbjct: 407 FDRLRNELI----EASGRDA-IEYVLERSKECALQRYERP-----TYDSLRGRGNGGWHD 456
Query: 178 --------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
L +Q AV L EWRD AR DDEST VL R+L IA+++P + +
Sbjct: 457 MLSNSPVLLTREQFAVFRALHEWRDKTARTDDESTQTVLSKRSLFRIAQEMPVDKFAVLQ 516
Query: 230 LLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
L + + V ++I + +N++
Sbjct: 517 LASPVSASLRSRTEEVAALIAKAKKNSST 545
>gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia]
Length = 676
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 155/257 (60%), Gaps = 8/257 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR++D+++D L Q+G L +F +P KV HGA+ D+ WLQRDFG+Y+ N+F
Sbjct: 239 IQLSTRSQDYIIDPFPLWKQLGDMLSVIFANPKIVKVFHGAENDVQWLQRDFGLYIVNLF 298
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L+L +NS ++LL +C + +K YQ ADW RPLPDEM++YA+ DTHYLLYI
Sbjct: 299 DTFHASKELQLMQNSFQFLLSEYCKKSTDKTYQTADWTQRPLPDEMIKYAQIDTHYLLYI 358
Query: 121 YDIMKIKLSSMPKESEN-SDTP---LTEVYKRSYDVCRQLYEKELLSENSYLH-IYGLQG 175
YD M+ L + K ++N S+ P L V KRS + ++Y+K L ++ L I Q
Sbjct: 359 YDRMRQDLKKLNKPNDNISNIPNYYLEAVLKRSKETALKIYKKPLQDQDQSLQTILNKQD 418
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL---K 232
+ A+ ++ L E R+ + D++ Y LPN L +I + PTT +L+ L K
Sbjct: 419 RRMEAKSFELMVRLLELREELGIKHDQNPRYFLPNPFLFKIVESKPTTIQELKSQLGGDK 478
Query: 233 SKHSYIERYMGPVLSII 249
+ H ++ + L ++
Sbjct: 479 NIHEVVKDNLWQFLKVL 495
>gi|405119146|gb|AFR93919.1| PM-scl autoantigen [Cryptococcus neoformans var. grubii H99]
Length = 954
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 151/274 (55%), Gaps = 27/274 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QISTR D+VVDTL LR ++ +VF DPT KV HGAD DI+WLQRDF I++ N+
Sbjct: 288 IQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNL 347
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A VL++ + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+
Sbjct: 348 FDTYSACVVLEMPQRSLSALLQHYCSFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLF 407
Query: 120 IYDIMKIKL---SSMPKESENSDT------------PLTEVYKRSYDVCRQLYEKELLSE 164
IYD ++ L SS P T + EV +RS D ++YE++
Sbjct: 408 IYDNLRNALLHKSSRPSSPATCGTIVLDSARPNPQEAMREVLERSADTALKMYERDSYDI 467
Query: 165 NSYLHIYGLQGAG--------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ G AG + + V L +WRD +AR DES YV+PN L ++
Sbjct: 468 ETGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYVMPNNMLRDV 527
Query: 217 AKQLPTTAAKLRRLLKSKHSYI-ERYMGPVLSII 249
+ A L R+++ + I +Y+ + SII
Sbjct: 528 STA--DNTANLSRIIRRDRAPIAAQYIPEITSII 559
>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
lyrata]
gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
lyrata]
Length = 891
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 139/240 (57%), Gaps = 22/240 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST +DF+VDT+ L LR VF +P KV HGAD D++WLQRDF IY+ NMF
Sbjct: 159 IQISTHEKDFLVDTIVLH-DAMSILRPVFSEPNICKVFHGADNDVLWLQRDFHIYVVNMF 217
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI
Sbjct: 218 DTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYI 277
Query: 121 YDIMKIKLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENS 166
D + +L + +E+S +P L E +RS C QLY KE S
Sbjct: 278 ADSLTAELKQLA--TEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAAASSII 335
Query: 167 YLHIYGL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
Y H+ G LNA++L V LC WRD++ R DEST YVL ++ ++ +A + PTT
Sbjct: 336 YRHLNGHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLACKQPTT 393
>gi|67537662|ref|XP_662605.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
gi|40741889|gb|EAA61079.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
gi|259482125|tpe|CBF76306.1| TPA: exosome complex exonuclease Rrp6, putative (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 1297
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 147/265 (55%), Gaps = 11/265 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP K+ HG+ DI+WLQRD G+Y+ MF
Sbjct: 271 MQISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMF 330
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL+YLLH F A+K+YQ ADWR+RPLP M YAR DTHYLLYI
Sbjct: 331 DTYHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYI 390
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQ 174
YD ++ +L + S D + V ++S Q YE+ + + + +
Sbjct: 391 YDNLRNELLT---NSTPEDNLVDYVLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRS 447
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
A L+++Q AV+ + EWRD +AR +DE V P L +A+ +P L R + S
Sbjct: 448 PAILSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTM-SP 506
Query: 235 HSYIERYMGP-VLSIIKNSMQNAAN 258
+ I + P +L +IK + A
Sbjct: 507 MTPIAKDRAPDLLQVIKTAKAEGAT 531
>gi|393212538|gb|EJC98038.1| hypothetical protein FOMMEDRAFT_149467 [Fomitiporia mediterranea
MF3/22]
Length = 845
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 153/260 (58%), Gaps = 10/260 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL LR ++ L E+F DP KV+HGAD D+VWLQ+DF IY+ N+F
Sbjct: 292 MQISTREEDFIIDTLALREELE-ELNEIFTDPKIVKVLHGADSDVVWLQQDFNIYIVNLF 350
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS++L ++ L LL +C +K YQ ADWR+RPLPDEM++YAR DTH+LLYI
Sbjct: 351 DTYHASKLLDFPKHGLGALLEMYCDFVPDKRYQLADWRIRPLPDEMMKYARSDTHFLLYI 410
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-ENSY----LHIYGLQ- 174
YD ++ +++ + + RS D ++YE E EN + L+
Sbjct: 411 YDNLR---NALLDRARGQPDLVRSALSRSEDTALRIYEPEFYDLENGTGPGGWNTLSLKW 467
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
G L+ Q V WRD +AR +DEST YV+PN L ++A++ PT A L + +
Sbjct: 468 GRALSGTQHTVFRAAHAWRDALARKEDESTRYVMPNHYLFQLAERPPTDMANLLSIFRPV 527
Query: 235 HSYIERYMGPVLSIIKNSMQ 254
+ +L +I+ +++
Sbjct: 528 PPLVRTQAASLLEVIRTAVK 547
>gi|398390487|ref|XP_003848704.1| hypothetical protein MYCGRDRAFT_76687 [Zymoseptoria tritici IPO323]
gi|339468579|gb|EGP83680.1| hypothetical protein MYCGRDRAFT_76687 [Zymoseptoria tritici IPO323]
Length = 796
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 144/267 (53%), Gaps = 10/267 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF +PT KV+HGA D +WLQRD G+YL +F
Sbjct: 262 MQISTRDKDWIVDTLKPWRRKLQCLNEVFANPTIVKVLHGAFMDAIWLQRDLGLYLVGLF 321
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A R L SL +LL F V+A K++Q ADWRVRPLP E+ YAR DTHYLLYI
Sbjct: 322 DTHYACRALGYAGGSLAFLLKKFADVDAQKQHQMADWRVRPLPKELFDYARSDTHYLLYI 381
Query: 121 YDIMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN------SYLHIY 171
+D M+ I+ S K D L +V ++S +V Q YE + +
Sbjct: 382 FDCMRNELIERSDFSKPDHEGDK-LWDVLQKSTEVALQRYEHPQYDAELGQGAMGWYKLL 440
Query: 172 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
A + +Q AV + WRD +AR D+S +V+PN + +AK +P T L +
Sbjct: 441 SRTPALFSPEQFAVFKAVHHWRDRVAREQDDSIHFVMPNHQIFSLAKAMPPTRLALMGIA 500
Query: 232 KSKHSYIERYMGPVLSIIKNSMQNAAN 258
+ + +LS+I + + N
Sbjct: 501 QPTTQTVRLRADELLSVIVRAQEAGKN 527
>gi|302657746|ref|XP_003020587.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
HKI 0517]
gi|291184437|gb|EFE39969.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
HKI 0517]
Length = 881
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 149/272 (54%), Gaps = 15/272 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +F
Sbjct: 287 MQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLF 346
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI
Sbjct: 347 DTFHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYI 406
Query: 121 YDIMKIK-LSSMPKESENSDT--------PLTEVYKRSYDVCRQLYEKELL------SEN 165
+D ++ + L +P SE ++ + V +RS + Q YE+
Sbjct: 407 FDRLRNQLLELLPSSSEEKESGPGGGGREAIEYVLERSKECALQRYERPTYDAATGRGSG 466
Query: 166 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
+ + L +Q AV L EWRD ARADDES VL R L +A+++P
Sbjct: 467 GWHDMLSNSPVALTREQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKF 526
Query: 226 KLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 257
+ R+ + + V +I+ + Q
Sbjct: 527 AVLRMGSPVSASLRSRTDEVAGLIREARQQGG 558
>gi|453081050|gb|EMF09100.1| 3_5_exonuc-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 782
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 136/229 (59%), Gaps = 9/229 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 258 MQISTRDKDWIVDTLKPWRRKLQCLNEVFADPGIIKVLHGAFMDIMWLQRDLGLYIVGLF 317
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ VL SL +LL F V+A K+YQ ADWRVRPLP E+ YAR DTH+LLYI
Sbjct: 318 DTFHAASVLGYTGRSLAFLLKKFANVDAQKQYQTADWRVRPLPTELFDYARSDTHFLLYI 377
Query: 121 YDIMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQ-----LYEKELLSENSYLHIYG 172
+D M+ I S++ + D + +V +RS + Q +Y+ EL + +
Sbjct: 378 FDNMRNELIHRSNLELPNHEGDK-IYDVLQRSSEEALQRYEYPVYDAELGQGAGWYRLLS 436
Query: 173 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
A L +Q +V + +WRD +AR D+S Y++PN + IA+ +P
Sbjct: 437 RTSAMLTKEQFSVFRAVHQWRDEVAREQDDSVNYIMPNHQIFSIARAMP 485
>gi|429849634|gb|ELA24996.1| exosome complex exonuclease [Colletotrichum gloeosporioides Nara
gc5]
Length = 908
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 138/238 (57%), Gaps = 8/238 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK Q L +VF DP KV HG+ DI+WLQRD G+Y+ +F
Sbjct: 305 MQISTREKDWVVDTLKPWRQQLQVLNQVFADPNIVKVFHGSYMDIIWLQRDLGLYVNGLF 364
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A L + SL +LL F +A+K YQ ADWR+RPL EML YAR DTHYLLY+
Sbjct: 365 DTFYACEALHYPQKSLAFLLSKFANFDADKRYQMADWRMRPLSPEMLYYARSDTHYLLYV 424
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKEL---LSENSYLHIYGL--- 173
YD ++ +L M + N T E V ++S YE E +S YGL
Sbjct: 425 YDKVRNEL-VMKSDRGNPGTNYIETVLQKSKSQSLSRYEGEHFDPVSGKGPKGWYGLLLK 483
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
A + QQ AV + WRD +AR +DEST YVLPN + +IAK++P A L L+
Sbjct: 484 HPAPFSGQQFAVYRAVWAWRDEVARREDESTAYVLPNAIIGDIAKRMPPDAKALHALI 541
>gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 854
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 169/317 (53%), Gaps = 31/317 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R D++VD L LR ++ L E+F DP KV+HGA+ D+VWLQ+DF +Y+ N+F
Sbjct: 283 MQISDRENDWIVDLLALRDEIE-QLNEIFTDPKIVKVLHGAESDVVWLQQDFNVYIVNLF 341
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS++L R+ L LL +C +K YQ ADWR+RPLP EML YAR DTH+LL+I
Sbjct: 342 DTFHASKLLDFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPQEMLDYARSDTHFLLFI 401
Query: 121 YDIMKIKL---------SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------- 164
YD ++ L S + LT+V RS + ++Y KE
Sbjct: 402 YDNLRNALLDRSRSRSSSPSSSSQKPQHALLTQVLTRSAETSLRVYVKEPYDAADGSGPG 461
Query: 165 ---------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 215
N + G G G+ A Q V + WR+ +AR +DEST Y +PN+ L +
Sbjct: 462 GWDTLAKKWNKGALMAGGPGVGIGAMQREVYVRVHGWRERVAREEDESTRYTMPNQYLFQ 521
Query: 216 IAKQLPTTAAKLRRLLKSK-HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVA 274
+A+Q P A L + KS + + R +L +I+ ++ + +A K++EE +
Sbjct: 522 LAEQPPADMAALLGVFKSSVPALVRRRAKELLEVIREGVKRGLEGKQVA-KVEEEPSKTG 580
Query: 275 SEETEVLVLDTSSNLKI 291
S EV+ D +S K+
Sbjct: 581 S---EVVAPDAASKEKM 594
>gi|58265702|ref|XP_570007.1| PM-scl autoantigen [Cryptococcus neoformans var. neoformans JEC21]
gi|57226239|gb|AAW42700.1| PM-scl autoantigen, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1016
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 152/279 (54%), Gaps = 37/279 (13%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QISTR D+VVDTL LR ++ +VF DPT KV HGAD DI+WLQRDF I++ N+
Sbjct: 350 IQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNL 409
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A VL++ + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+
Sbjct: 410 FDTYSACVVLEMPQRSLSALLQHYCNFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLF 469
Query: 120 IYDIMKIKL---SSMPKESENSDT------------PLTEVYKRSYDVCRQLYEKELLSE 164
IYD ++ L SS P N T + EV +S D ++YE+
Sbjct: 470 IYDNLRNALLHKSSRPSSPANCGTIVLDSARPNPQEAMREVLGKSADTALKMYER----- 524
Query: 165 NSYLHIYGLQGAGLNA-------------QQLAVVAGLCEWRDVIARADDESTGYVLPNR 211
+SY + G G A + V L +WRD +AR DES Y++PN
Sbjct: 525 DSYDIVTGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYIMPNN 584
Query: 212 TLIEIAKQLPTTAAKLRRLLKSKHSYI-ERYMGPVLSII 249
L +++ A L R+++ + I +Y+ + SII
Sbjct: 585 MLRDVSTA--DNTANLSRIIRRDRAPIAAQYIPEITSII 621
>gi|380485396|emb|CCF39387.1| 3'-5' exonuclease [Colletotrichum higginsianum]
Length = 732
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 143/247 (57%), Gaps = 9/247 (3%)
Query: 1 MQISTRTEDFVVDTLK-LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQISTR +D++VDTLK R Q+ L EVF DP+ KV HGA D+VWLQRD G+Y+ +
Sbjct: 113 MQISTREKDWIVDTLKPWRGQL-EVLNEVFADPSIVKVFHGAFMDMVWLQRDLGLYVNGL 171
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDTG A VL + SL +LL F +A+K+YQ ADWRVRPL +EML YAR DTHYLLY
Sbjct: 172 FDTGMACEVLHYPQKSLAFLLKKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYLLY 231
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL- 178
IYD M+ +L + ++S + Y E + + G L
Sbjct: 232 IYDKMRNELVMKSDRGNPGSDYIEAALQKSKTLSLSRYGGETFNPKTGKGSKGWYNTLLK 291
Query: 179 -----NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 233
+ QQ AV + WRD +AR +DEST +VLPN + +IAK +P A L L+ +
Sbjct: 292 HPMPFSGQQFAVYRAIWAWRDEVARREDESTPFVLPNGIIGDIAKHMPPDAKALHALIPN 351
Query: 234 KHSYIER 240
H+++ +
Sbjct: 352 -HAFLAK 357
>gi|302817816|ref|XP_002990583.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
gi|300141751|gb|EFJ08460.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
Length = 1449
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 164/282 (58%), Gaps = 25/282 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST D+++D + L ++ LR VF + + KV HGAD DI+WLQRDF IY+ N+F
Sbjct: 801 IQISTYKRDYLIDAIALHDEME-TLRPVFANASICKVFHGADSDILWLQRDFHIYVVNLF 859
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +C ++ NK +Q +DWR RPLP+++L YAR D H+LLYI
Sbjct: 860 DTARACDVLGKPQRSLAYLLQTYCNISTNKAFQKSDWRQRPLPEDILLYARSDAHFLLYI 919
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG-LQGAGLN 179
+ +L + E++ ++ PL +RS+ +C QLYEK+ S ++ ++ Q + L+
Sbjct: 920 ARKLYSEL--LQGETDLANAPLQMATRRSHLICLQLYEKDASSASAAASLFSKFQESNLD 977
Query: 180 AQQLAVVAG----LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR------ 229
+ A + LCEWRD +AR +DES +VL + ++ IA+ LP T ++ R
Sbjct: 978 KPREASMRRRLRLLCEWRDAVARIEDESLRFVLSDAAIVAIARTLPRTGKEVYRSIHAAD 1037
Query: 230 -----------LLKSKHSYIERYMGPVLSIIKNSMQNAANFE 260
LL S ++R++ ++ IK+S NA + E
Sbjct: 1038 MATSTDSSKTSLLPSPSPLVKRHISSLILAIKDSAANATSGE 1079
>gi|326473059|gb|EGD97068.1| hypothetical protein TESG_04488 [Trichophyton tonsurans CBS 112818]
Length = 898
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 142/260 (54%), Gaps = 9/260 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +F
Sbjct: 274 MQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLF 333
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI
Sbjct: 334 DTFHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYI 393
Query: 121 YDIMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 177
+D ++ +L +P ES + + +YD + +
Sbjct: 394 FDRLRNQLLDLPSESGFGAGGREAIDCTERPTYDAATGR------GSGGWHDMLSNSPVA 447
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 237
L +Q AV L EWRD ARADDES VL R L +A+++P + R+ +
Sbjct: 448 LTREQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSAS 507
Query: 238 IERYMGPVLSIIKNSMQNAA 257
+ V +I+ + Q
Sbjct: 508 LRSRTDEVAGLIREARQQGG 527
>gi|452837795|gb|EME39736.1| hypothetical protein DOTSEDRAFT_138360 [Dothistroma septosporum
NZE10]
Length = 784
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 136/230 (59%), Gaps = 10/230 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTL+ + L EVF DP+ KV+HGA DIVWLQRD G+Y+ +F
Sbjct: 262 MQISTRDKDWVVDTLQPWRRKMQCLNEVFVDPSIVKVLHGAYMDIVWLQRDLGLYIVGLF 321
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L SL +LL F +A K+YQ ADWR+RPLP E+ YAR DTH+LLYI
Sbjct: 322 DTHYAARALGYTGGSLAFLLKKFIDFDAQKQYQMADWRIRPLPQELFDYARSDTHFLLYI 381
Query: 121 YDIMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIY 171
+D M+ ++ S K D + +V ++S +V Q YE + + +
Sbjct: 382 FDNMRNELVQRSDFSKPDHEGDK-VWDVLQKSNEVALQKYEHPIYDAELGQGAGGWYKML 440
Query: 172 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
A + +Q +V + +WRD +AR D+ST YV+PN ++ IAK +P
Sbjct: 441 ARTPALFSKEQFSVFRAVHKWRDDVAREQDDSTHYVMPNHQVLSIAKAMP 490
>gi|134109437|ref|XP_776833.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259513|gb|EAL22186.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1016
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 153/279 (54%), Gaps = 37/279 (13%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QISTR D+VVDTL LR ++ +VF DPT KV HGAD DI+WLQRDF I++ N+
Sbjct: 350 IQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNL 409
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A VL++ + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+
Sbjct: 410 FDTYSACVVLEMPQRSLSALLQHYCNFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLF 469
Query: 120 IYDIMKIKL---SSMPKESENSDT------------PLTEVYKRSYDVCRQLYEKELLSE 164
IYD ++ L SS P N T + EV +S D ++YE+
Sbjct: 470 IYDNLRNALLHKSSRPSSPANCGTIVLDSARPNPQEAMREVLGKSADTALKMYER----- 524
Query: 165 NSYLHIYGLQGAGLNA-------------QQLAVVAGLCEWRDVIARADDESTGYVLPNR 211
+SY + G G A + V L +WRD +AR DES Y++PN
Sbjct: 525 DSYDIVTGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYIMPNN 584
Query: 212 TLIEIAKQLPTTAAKLRRLLKSKHSYI-ERYMGPVLSII 249
L +++ T A L R+++ + I +Y+ + SI+
Sbjct: 585 MLRDVSTADNT--ANLSRIIRRDRAPIAAQYIPEITSIV 621
>gi|388857402|emb|CCF49076.1| related to RRP6-Exonuclease component of the nuclear exosome
[Ustilago hordei]
Length = 1006
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 160/290 (55%), Gaps = 26/290 (8%)
Query: 1 MQISTRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQ+STR D+++DTL V Q L F DP+K KV+HGA+ D++WLQRD G+YL N+
Sbjct: 389 MQLSTRWGDWIIDTLSDEVRQHAELLNSSFTDPSKVKVLHGANHDVLWLQRDLGLYLVNL 448
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LLY
Sbjct: 449 FDTYHATNVLMFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLY 508
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQ 174
IYD ++ +L ES D + EV+ RS DV Y KE + + ++
Sbjct: 509 IYDNLRHEL----MESGGLDA-IREVFNRSKDVAMSTYAKEEWDSQGETREGWRSVWRKW 563
Query: 175 G--AGLNAQ----------QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
G A L + + +V L +WRD +AR +DES Y+L L+ +A + P
Sbjct: 564 GGEAALGTEDRRELSQMKKEERLVRALHKWRDGVAREEDESPRYILGANNLMMLAARAPV 623
Query: 223 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 272
+ + S +++ +G + +IK+ ++ +E +KL EE+ +
Sbjct: 624 KPEGVLACVPPNASGLKKRIGELAKLIKDEVE---AWEKHQEKLSEEKRQ 670
>gi|356515280|ref|XP_003526329.1| PREDICTED: uncharacterized protein LOC100791485 [Glycine max]
Length = 873
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 141/232 (60%), Gaps = 16/232 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR +D++VDT+ L +G LR +F +P+ KV HGAD DIVWLQRDF IY+ N+F
Sbjct: 160 VQISTREKDYLVDTIALHDFMG-ILRPIFANPSICKVFHGADNDIVWLQRDFHIYVVNLF 218
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV NK Q DWR RPL EM+ YAR D HYLLYI
Sbjct: 219 DTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHYLLYI 278
Query: 121 YDIMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKELLS---ENSYLHIY--- 171
+ + +L + E+ +SD + E +RS +C QL++KE+ + E+S L ++
Sbjct: 279 ANCLINELKQLDNENSSSDDKFHFVLEASRRSNMICLQLFKKEIEASPGESSALSLFSRR 338
Query: 172 ----GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 219
G AQ +V LC WRD++AR DES YVL ++ ++ +A Q
Sbjct: 339 VSSHGFPSISNEAQN--IVRQLCTWRDLMARIHDESLKYVLSDQAIVALASQ 388
>gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera]
Length = 935
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 144/248 (58%), Gaps = 20/248 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST+ ED++VDT+ L + L+ VF +P+ KV HGAD D++WLQRDF IY+ N+F
Sbjct: 154 IQISTQNEDYLVDTIALHDTLD-VLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLF 212
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV NK Q DWR RPL EML YA+ D HYLLYI
Sbjct: 213 DTAKACEVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYI 272
Query: 121 YDIMKIKLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENS 166
+ + +L +SENS P + E +RS VC QLY KE+ S
Sbjct: 273 ANCLIAELRQ--HDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSII 330
Query: 167 YLHIYGLQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
H+ G G A L +V LC WRD++AR DES YVL ++ +I +A ++PTT
Sbjct: 331 SRHLNGQGGISSKACDLQFQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTT 390
Query: 224 AAKLRRLL 231
++ L+
Sbjct: 391 QKEICTLI 398
>gi|357471299|ref|XP_003605934.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
gi|355506989|gb|AES88131.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
Length = 974
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 147/245 (60%), Gaps = 19/245 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST+ ED+++DT+ L + LR VF DP+ KV HGAD D++WLQRDF IY+ N+F
Sbjct: 194 VQISTQQEDYLIDTIALHDSM-EILRPVFADPSICKVFHGADNDVLWLQRDFHIYVVNLF 252
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ-----NADWRVRPLPDEMLRYAREDTH 115
DT +A VL + SL YLL +CGVN NK Q DWR RPL EM+ YAR D H
Sbjct: 253 DTSKACEVLSKPQKSLAYLLETYCGVNTNKLLQVWPNYREDWRQRPLSAEMVHYARTDAH 312
Query: 116 YLLYIYDIMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKELLS---ENSYLH 169
YLLYI + + +L + E+ SD + E +RS +C QL+ KE+ + E++ L
Sbjct: 313 YLLYIANCLIDELKQLDNENSCSDDKFHFVLEASRRSNMICLQLFTKEIEASPGESAALS 372
Query: 170 IYGLQGAGLNA-------QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
+Y + + Q L++V LC WRD++AR DES YVL ++ ++ +A +LP
Sbjct: 373 LYSRHQSNRASPSISNETQFLSIVRQLCTWRDLMARIHDESLKYVLSDQAIVALASRLPA 432
Query: 223 TAAKL 227
+ +++
Sbjct: 433 SNSEI 437
>gi|358339908|dbj|GAA47879.1| exosome complex exonuclease RRP6, partial [Clonorchis sinensis]
Length = 1125
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 145/254 (57%), Gaps = 12/254 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT D+++D L LR + L +F DP KV HG+D D++WLQRDF IY+ N+F
Sbjct: 637 VQLSTRTTDYILDALALRDHLHK-LNVIFTDPDVVKVFHGSDLDLMWLQRDFSIYVVNLF 695
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A+R L+L R SL +LL + V ANK+YQ ADWR+RPLPDE++ YAR DTHYLL++
Sbjct: 696 DTGLAARALQLGRFSLSFLLLRYANVRANKKYQLADWRIRPLPDELIEYARTDTHYLLHV 755
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENSYLHIY-GLQGAGL 178
+M E D L + V + +C + Y K YL +Y G
Sbjct: 756 SAVMC---------QELQDRGLLDVVLEGGRQLCLKRYTKPAFDPLGYLSLYRQAAGTSF 806
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
N +QL + L RD IAR +DES YVLPN L IA+ LP ++ L +
Sbjct: 807 NHRQLYALEQLYALRDSIARREDESVHYVLPNHMLKTIAEVLPRESSGLFACCNPIPPLV 866
Query: 239 ERYMGPVLSIIKNS 252
+Y+ + II ++
Sbjct: 867 RKYVHDLHKIIVDA 880
>gi|225447009|ref|XP_002268685.1| PREDICTED: uncharacterized protein LOC100261955 [Vitis vinifera]
Length = 936
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/246 (43%), Positives = 144/246 (58%), Gaps = 18/246 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST+ ED++VDT+ L + L+ VF +P+ KV HGAD D++WLQRDF IY+ N+F
Sbjct: 154 IQISTQNEDYLVDTIALHDTLD-VLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLF 212
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV NK Q DWR RPL EML YA+ D HYLLYI
Sbjct: 213 DTAKACEVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYI 272
Query: 121 YDIMKIKLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENS 166
+ + +L +SENS P + E +RS VC QLY KE+ S
Sbjct: 273 ANCLIAELRQ--HDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSII 330
Query: 167 YLHIYGLQGAGLNAQQLA-VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
H+ G G A L +V LC WRD++AR DES YVL ++ +I +A ++PTT
Sbjct: 331 SRHLNGQGGISSKACDLQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTTQK 390
Query: 226 KLRRLL 231
++ L+
Sbjct: 391 EICTLI 396
>gi|159127645|gb|EDP52760.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
A1163]
Length = 764
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 145/260 (55%), Gaps = 13/260 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MF
Sbjct: 266 MQISTRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMF 325
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LLH F A+K YQ ADWR+RPLP M YAR DTHYLLYI
Sbjct: 326 DTYHAACALNYPKRSLKFLLHKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYI 385
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYG 172
YD ++ +L E+ D L + V ++S + Q YE+ + + Y ++Y
Sbjct: 386 YDHLRNEL----LENSTPDHNLVDYVLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYR 441
Query: 173 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 232
A L+ +Q AV + +WRD +AR +DE V P L +IA+ +P L R L
Sbjct: 442 -NPAVLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLS 500
Query: 233 SKHSYIERYMGPVLSIIKNS 252
+ +L +IK +
Sbjct: 501 PVTPIAKDRAADLLEVIKKA 520
>gi|70999828|ref|XP_754631.1| exosome complex exonuclease Rrp6 [Aspergillus fumigatus Af293]
gi|66852268|gb|EAL92593.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
Af293]
Length = 764
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 145/260 (55%), Gaps = 13/260 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MF
Sbjct: 266 MQISTRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMF 325
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LLH F A+K YQ ADWR+RPLP M YAR DTHYLLYI
Sbjct: 326 DTYHAACALNYPKRSLKFLLHKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYI 385
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYG 172
YD ++ +L E+ D L + V ++S + Q YE+ + + Y ++Y
Sbjct: 386 YDHLRNEL----LENSTPDHNLVDYVLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYR 441
Query: 173 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 232
A L+ +Q AV + +WRD +AR +DE V P L +IA+ +P L R L
Sbjct: 442 -NPAVLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLS 500
Query: 233 SKHSYIERYMGPVLSIIKNS 252
+ +L +IK +
Sbjct: 501 PVTPIAKDRAADLLEVIKKA 520
>gi|340518928|gb|EGR49168.1| predicted protein [Trichoderma reesei QM6a]
Length = 818
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 135/238 (56%), Gaps = 7/238 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR +D++VDTLK L EVF DPT KV HGA D+VWLQRD G+Y+ +F
Sbjct: 264 LQISTREKDWIVDTLKPWRHKLQVLNEVFADPTIVKVFHGAYMDMVWLQRDLGLYVNGLF 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS L SL +LL F +A+K YQ ADWR+RP+P+EML YAR DTH+LLYI
Sbjct: 324 DTFFASDALHYSSRSLAFLLSKFVNFDADKRYQLADWRIRPIPEEMLFYARSDTHFLLYI 383
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGL 173
YD ++ L + S + V ++S ++ +E +E + Y +
Sbjct: 384 YDKIRNDLVQVSDRSNPDKDLIGRVLEKSRELSLSRHEHPEFNEETGEGSRGWYNFVLKN 443
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
G ++Q AV L +WRDV AR +DE+ +VL L++IA+ P A L LL
Sbjct: 444 SHLGYKSEQFAVFRALWKWRDVTARTEDENPNFVLGTNNLVDIARANPPDAKALHSLL 501
>gi|390603116|gb|EIN12508.1| hypothetical protein PUNSTDRAFT_97267 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 870
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 135/252 (53%), Gaps = 32/252 (12%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTED++VDTL LR ++ L EVF DP KV HGA+ DI WLQ+DF +++ +F
Sbjct: 296 MQISTRTEDWIVDTLVLRDELEE-LNEVFTDPRIVKVFHGAESDIQWLQQDFNVFVVGLF 354
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+VL R+ L LL +C A+K YQ ADWR+RPLP EML YAR DTHYLLYI
Sbjct: 355 DTFHASKVLHFPRHGLASLLEMYCDFIADKRYQLADWRIRPLPQEMLDYARSDTHYLLYI 414
Query: 121 YDIMKIKL----------------------SSMPKESENSDTPLTEVYKRSYDVCRQLYE 158
YD ++ L S S+ + L EV RS + +E
Sbjct: 415 YDHLRHALLERGTSPAFAAYTPVDITLETPISHLTPSDGATWLLREVLARSAQTTLRTFE 474
Query: 159 KELLSE---------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 209
+EL ++ + + Q AV + WRD +AR +DES YVLP
Sbjct: 475 RELYDADNGTGPAGWDTLARKWNKSAGAMPPVQRAVYRAVHAWRDRVAREEDESARYVLP 534
Query: 210 NRTLIEIAKQLP 221
N L +IA+ P
Sbjct: 535 NHYLFQIAESPP 546
>gi|358385873|gb|EHK23469.1| hypothetical protein TRIVIDRAFT_123406, partial [Trichoderma virens
Gv29-8]
Length = 821
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 131/238 (55%), Gaps = 7/238 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK L EVF DPT KV HGA D+VWLQRD G+Y+ +F
Sbjct: 264 MQISTREKDWIVDTLKPWRHKLQVLNEVFADPTIVKVFHGAYMDMVWLQRDLGLYVNGLF 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS L SL +LL F A+K YQ ADWR+RPLP+EM+ YAR DTHYLLYI
Sbjct: 324 DTFFASEALHYSSRSLAFLLSKFVNFEADKRYQLADWRIRPLPEEMMYYARSDTHYLLYI 383
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGL 173
YD ++ L + S ++ V ++S + +E +E + Y +
Sbjct: 384 YDKIRNDLVQLSDRSNPDKDLISIVLEKSRGLSLSRHENLEFNEETGEGSRGWYNFVLKN 443
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
G + Q A+ L +WRDV AR +DE+ +VL L EIA+ P A LL
Sbjct: 444 SHFGYKSDQFAIFRALWKWRDVTARTEDENPNFVLGTSNLTEIARANPPDAKAFHSLL 501
>gi|212528170|ref|XP_002144242.1| exosome component 3'-5' exonuclease [Talaromyces marneffei ATCC
18224]
gi|210073640|gb|EEA27727.1| exosome complex exonuclease Rrp6, putative [Talaromyces marneffei
ATCC 18224]
Length = 795
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 106/266 (39%), Positives = 149/266 (56%), Gaps = 25/266 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTL+ + L EVF DP KV HG+ DIVWLQRD G+Y+ +F
Sbjct: 269 MQISTRDKDWVVDTLQPWREDLQQLNEVFADPNILKVFHGSTMDIVWLQRDLGLYVVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL + A+K+YQ ADWR+RPL +EMLRYAR DTHYLLYI
Sbjct: 329 DTYHAAVALGFPKRSLKFLLEKYARYEADKKYQMADWRLRPLTEEMLRYARADTHYLLYI 388
Query: 121 YDIMKIKL--SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG- 177
YD ++ +L S PK ++ + V +RS Q YE+ + + G QGAG
Sbjct: 389 YDCLRNELLEKSTPKRNQ-----IDYVLERSKTEALQRYERPVYD------MAGGQGAGG 437
Query: 178 -----------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
L+ +Q AV + EWRD +AR +DE V P L ++A +P
Sbjct: 438 WHDLLSRNPALLSKEQFAVFRAVHEWRDRVAREEDEGLQCVFPRHMLFKVAIAMPVDKHT 497
Query: 227 LRRLLKSKHSYIERYMGPVLSIIKNS 252
L + L ++ + +L++IK +
Sbjct: 498 LFKTLSPVTLIVKYRINELLALIKKA 523
>gi|407850984|gb|EKG05126.1| hypothetical protein TCSYLVIO_003804 [Trypanosoma cruzi]
Length = 713
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 152/258 (58%), Gaps = 4/258 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+ED ++D LKLR + L VF +P KV+HGA DI WLQ+DFG+YL N F
Sbjct: 254 MQISTRSEDILIDCLKLR-SLMHLLAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + + L + + HFC V +K+YQ ADWR+RP+P EM+ YAR+DTH+LLY+
Sbjct: 313 DTGIALQTLHMP-HGLAFAVDHFCQVKLDKKYQTADWRIRPIPAEMVTYARQDTHFLLYV 371
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLN 179
YD +K L + + + L V S + ++YEK +L + SY G GL+
Sbjct: 372 YDRLKTLLLNSEGRASIGNL-LVHVLNESRRLSLEIYEKPQLDPDASYKIALGRSLGGLS 430
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+ Q+ V + WRD IAR D+S VL ++ IA +LPT+A + + +
Sbjct: 431 SVQMQVAREIFNWRDAIAREVDDSPPAVLRLSAVLAIATKLPTSANDVLKCCTPVSMVVR 490
Query: 240 RYMGPVLSIIKNSMQNAA 257
+ ++ I+K+S+ + A
Sbjct: 491 TNVTRLVQIVKDSVGDDA 508
>gi|121705450|ref|XP_001270988.1| exosome component 3'-5' exonuclease [Aspergillus clavatus NRRL 1]
gi|119399134|gb|EAW09562.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
NRRL 1]
Length = 778
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 145/266 (54%), Gaps = 13/266 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L +VF DP KV+HG+ DI+WLQRD G+Y+ MF
Sbjct: 271 MQISTRDKDWVVDTLKPWREDLQILNDVFADPAILKVLHGSSMDIIWLQRDLGLYVVGMF 330
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A+K YQ ADWR+RPLP M YAR DTHYLLYI
Sbjct: 331 DTYHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYI 390
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYG 172
YD ++ +L E+ D L + V ++S + Q YE+ + + Y ++Y
Sbjct: 391 YDHLRNEL----LENSTPDHSLIDYVSEQSKNEALQRYERPVYDAGTGQGQGGWYDYLYR 446
Query: 173 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 232
A L+ +Q AV + +WRD +AR +DE V P L +IA+ +P L R L
Sbjct: 447 -TPAVLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFKIAQSMPLDQGTLFRTLS 505
Query: 233 SKHSYIERYMGPVLSIIKNSMQNAAN 258
+ +L +IK + A
Sbjct: 506 PMTPIVRDRAATLLEVIKQAKIEGAT 531
>gi|396483292|ref|XP_003841672.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria maculans
JN3]
gi|312218247|emb|CBX98193.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria maculans
JN3]
Length = 783
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 144/269 (53%), Gaps = 16/269 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF +P KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 256 MQISTRNQDWIVDTLKPWRRKLECLNEVFANPDIIKVLHGAYMDIMWLQRDLGLYVVGLF 315
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L SL YLL F G A K+YQ ADWR+RPL E+ YAR DTH+LLYI
Sbjct: 316 DTYHAARSLGYPGASLAYLLDRFIGFKAQKQYQIADWRIRPLGKELFEYARADTHFLLYI 375
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
+D M+ +L S + +V ++S + Q YE + E +GL G
Sbjct: 376 FDNMRNELVEKSDLSNVEKNKVRDVLEKSKETALQRYEHPVYDEK-----FGLGTGGWYK 430
Query: 178 --------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
QQ AV + +WRD ++R +DES +++PN + +A+ +P+ + L
Sbjct: 431 LISRTPVQFTPQQFAVFRAVHQWRDELSRQEDESPLFIMPNHAVFSVARAMPSDKSALYN 490
Query: 230 LLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
++ I ++ +I + Q N
Sbjct: 491 AVQHVSHIIRARADDLVRVITKAKQEGVN 519
>gi|320034794|gb|EFW16737.1| exosome complex exonuclease Rrp6 [Coccidioides posadasii str.
Silveira]
Length = 772
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 143/259 (55%), Gaps = 11/259 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL + L EVF DP KV+HG+ D++WLQRD G+YL +F
Sbjct: 269 MQISTREKDWIVDTLLPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS L + SL++LL F + A K+YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 329 DTYHASVALNYPKKSLKFLLDKFVNLEAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS------YLHIYGL 173
YD ++ +L E DT L + V +S + Q YE+ + + + +
Sbjct: 389 YDNLRNELI----EKSTPDTNLIDYVQDKSKEEALQRYERPVYDAETGQGSGGWYDVLSR 444
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 233
+ LN +QLAV + WRD AR DDE VL R L IA +P+ A L +L
Sbjct: 445 SPSLLNREQLAVFKAVHRWRDQTARTDDEGVQSVLSKRALFAIAHGMPSDQAGLLKLAIP 504
Query: 234 KHSYIERYMGPVLSIIKNS 252
+ + + +L +IK++
Sbjct: 505 VSPSLRKRLSELLKVIKDA 523
>gi|342880534|gb|EGU81622.1| hypothetical protein FOXB_07858 [Fusarium oxysporum Fo5176]
Length = 860
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 134/238 (56%), Gaps = 7/238 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL+ L +VF DP KV HGA D+VWLQRD G+Y+ +F
Sbjct: 287 MQISTREKDWIVDTLQPWRHKLEVLNQVFTDPNVVKVFHGAYMDMVWLQRDLGLYVNGLF 346
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A L SL YLL F +A+K+YQ ADWR+RPLP+EM+ YAR DTHYLLYI
Sbjct: 347 DTFFACEQLHYPAKSLAYLLSKFVDFDADKQYQLADWRIRPLPEEMMYYARSDTHYLLYI 406
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGL 173
YD ++ +L + + + ++S + YE E + Y +I+
Sbjct: 407 YDRVRNELVAASDRGDVDKDYIGRAVEKSKEQSLSRYEHPGYDEETGEGSRGWYGYIFKN 466
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
+++Q AV L +WRD AR +DEST YVL R + EIA+ P A L LL
Sbjct: 467 SHLAFDSEQFAVFRALWKWRDNTARKEDESTNYVLSTRDITEIARINPPDAKALHSLL 524
>gi|303310683|ref|XP_003065353.1| exosome component 3'-5' exonuclease [Coccidioides posadasii C735
delta SOWgp]
gi|240105015|gb|EER23208.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 766
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 143/259 (55%), Gaps = 11/259 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL + L EVF DP KV+HG+ D++WLQRD G+YL +F
Sbjct: 269 MQISTREKDWIVDTLLPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS L + SL++LL F + A K+YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 329 DTYHASVALNYPKKSLKFLLDKFVNLEAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS------YLHIYGL 173
YD ++ +L E DT L + V +S + Q YE+ + + + +
Sbjct: 389 YDNLRNELI----EKSTPDTNLIDYVQDKSKEEALQRYERPVYDAETGQGSGGWYDVLSR 444
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 233
+ LN +QLAV + WRD AR DDE VL R L IA +P+ A L +L
Sbjct: 445 SPSLLNREQLAVFKAVHRWRDQTARTDDEGVQSVLSKRALFAIAHGMPSDQAGLLKLAIP 504
Query: 234 KHSYIERYMGPVLSIIKNS 252
+ + + +L +IK++
Sbjct: 505 VSPSLRKRLSELLKVIKDA 523
>gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei
gambiense DAL972]
Length = 738
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 154/258 (59%), Gaps = 6/258 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQISTRT+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+
Sbjct: 287 MQISTRTQDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNL 344
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY
Sbjct: 345 FDTSIALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLY 403
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGL 178
+YD +K L + + + L V++ S + + YEK L + +Y G GL
Sbjct: 404 VYDRLKQLLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGL 462
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
++ QL V + WRD+ AR D+S V+ ++ IA +LPT+A ++ + +
Sbjct: 463 SSSQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAV 522
Query: 239 ERYMGPVLSIIKNSMQNA 256
+ +L I+K+++ +A
Sbjct: 523 RTNVMKLLQIVKDAIGSA 540
>gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927]
gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei]
gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 736
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 154/258 (59%), Gaps = 6/258 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQISTRT+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+
Sbjct: 287 MQISTRTQDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNL 344
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY
Sbjct: 345 FDTSIALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLY 403
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGL 178
+YD +K L + + + L V++ S + + YEK L + +Y G GL
Sbjct: 404 VYDRLKQLLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGL 462
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
++ QL V + WRD+ AR D+S V+ ++ IA +LPT+A ++ + +
Sbjct: 463 SSSQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAV 522
Query: 239 ERYMGPVLSIIKNSMQNA 256
+ +L I+K+++ +A
Sbjct: 523 RTNVMKLLQIVKDAIGSA 540
>gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL
Brener]
gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
Length = 768
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 151/258 (58%), Gaps = 4/258 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+ED ++D LKLR + L VF +P KV+HGA DI WLQ+DFG+YL N F
Sbjct: 309 MQISTRSEDILIDCLKLRSSMH-LLAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFF 367
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + + L + + HFC V +K+YQ ADWR+RP+P EM YAR+DTH+LLY+
Sbjct: 368 DTGIALQTLHMP-HGLAFAVDHFCQVKLDKKYQTADWRIRPIPAEMATYARQDTHFLLYV 426
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLN 179
YD +K L + + + L V S + ++YEK +L + SY G GL+
Sbjct: 427 YDRLKTLLLNSEGRASIGNL-LVHVLNESRRLSLEIYEKPQLDPDASYKIALGRSLGGLS 485
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+ Q+ V + WRD IAR D+S VL ++ IA +LPT+A + + +
Sbjct: 486 SMQMKVAREIFNWRDAIAREVDDSPPAVLHLSAVLAIATKLPTSANDVLKCCTPVSMVVR 545
Query: 240 RYMGPVLSIIKNSMQNAA 257
+ ++ I+K+S+ + A
Sbjct: 546 TNVTRLVQIVKDSLGDDA 563
>gi|414886886|tpg|DAA62900.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 960
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 135/230 (58%), Gaps = 10/230 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST+ ED+++DT+ L +G LR VF + + K+ HGAD DI+WLQRDF IY+ NMF
Sbjct: 179 MQISTQNEDYLIDTIALHDVMG-ILRPVFANSSICKIFHGADNDILWLQRDFHIYVVNMF 237
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A +L + SL YLL +C V +K Q DWR+RPL EM+ YAR D HYLLYI
Sbjct: 238 DTAKACEILLKPQKSLAYLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYI 297
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQG 175
+ + +L + S + E RS VC QLY KE+ S + + LQ
Sbjct: 298 ANCLASELHAKAYTSSDKINFFFEASHRSNMVCMQLYSKEIESPPGASSATSILSRNLQT 357
Query: 176 AGLNAQQLA----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
G ++++ + +V C WRD++AR DES YVLP++ + +A LP
Sbjct: 358 HGFDSKKSSEVKDLVWKFCAWRDLMARMHDESLRYVLPDQAIAALAVSLP 407
>gi|321254177|ref|XP_003192989.1| exosome complex exonuclease RRP6 [Cryptococcus gattii WM276]
gi|317459458|gb|ADV21202.1| Exosome complex exonuclease RRP6 (Ribosomal RNA processing protein
6), putative [Cryptococcus gattii WM276]
Length = 851
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 147/274 (53%), Gaps = 27/274 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QISTR D+VVDTL LR ++ +VF DPT KV HGAD DIVWLQRDF I++ N+
Sbjct: 193 IQISTRENDWVVDTLSLRKEIQQDKFGDVFTDPTVVKVFHGADSDIVWLQRDFEIFVVNL 252
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A VL + + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+
Sbjct: 253 FDTYNACVVLGMPQRSLSALLQHYCNFEADKRYQRADWRIRPLPDGMLNYARSDTHFLLF 312
Query: 120 IYDIMKIKLSS---------------MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE 164
IYD ++ L + N + EV +S + ++YE++
Sbjct: 313 IYDNLRNALLHKSSRPSSPAASGTIVLDSAKPNPQEAMREVLDKSAETALKMYERDSYDI 372
Query: 165 NSYLHIYGLQGAG--------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ G AG + + V L +WRD +AR DES YV+PN L ++
Sbjct: 373 ETGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYVMPNNMLRDV 432
Query: 217 AKQLPTTAAKLRRLLKSKHSYI-ERYMGPVLSII 249
+ A L R+++ + I +Y+ + SII
Sbjct: 433 STA--DNTANLSRIIRRDRAPIAAQYIPEITSII 464
>gi|168005501|ref|XP_001755449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693577|gb|EDQ79929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 824
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 136/236 (57%), Gaps = 14/236 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST + D++VD + L + L +F +P K+ HGAD D +WLQRDF IY+ N+F
Sbjct: 107 IQISTYSTDYLVDAIALHDDMH-LLHPIFANPAILKIFHGADNDSLWLQRDFHIYIVNLF 165
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV+ K YQ +DWRVRPLP EM YAR D HYLLYI
Sbjct: 166 DTARACDVLGKPQRSLAYLLQLYCGVSTKKIYQRSDWRVRPLPAEMEIYARTDAHYLLYI 225
Query: 121 YDIMKIKLSSMPKESE--NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
M+ L N + L EV +RS VC+QLYEKE + ++S + + G
Sbjct: 226 AQCMRANLVQACNTPSLLNDNQLLLEVVRRSNAVCQQLYEKEGVGDSSSAVVASILGRLY 285
Query: 179 NAQQLA-----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
N A +V L EWRD +ARA+DES +V+ + L+ +AK+ P T
Sbjct: 286 NNSNSAMRGEEDAYLRRLVQKLVEWRDALARAEDESLRFVMSDAALLAVAKERPLT 341
>gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei]
Length = 703
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 154/258 (59%), Gaps = 6/258 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQISTRT+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+
Sbjct: 254 MQISTRTQDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNL 311
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY
Sbjct: 312 FDTSIALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLY 370
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGL 178
+YD +K L + + + L V++ S + + YEK L + +Y G GL
Sbjct: 371 VYDRLKQLLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGL 429
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
++ QL V + WRD+ AR D+S V+ ++ IA +LPT+A ++ + +
Sbjct: 430 SSPQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAV 489
Query: 239 ERYMGPVLSIIKNSMQNA 256
+ +L I+K+++ +A
Sbjct: 490 RTNVMKLLQIVKDAIGSA 507
>gi|145252306|ref|XP_001397666.1| exosome component 3'-5' exonuclease [Aspergillus niger CBS 513.88]
gi|134083214|emb|CAK42852.1| unnamed protein product [Aspergillus niger]
gi|350633598|gb|EHA21963.1| hypothetical protein ASPNIDRAFT_49025 [Aspergillus niger ATCC 1015]
Length = 782
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 147/272 (54%), Gaps = 25/272 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MF
Sbjct: 269 MQISTRDKDWVVDTLKPWREELQVLNEVFTDPNILKVLHGSSMDIIWLQRDLGLYVVGMF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+I
Sbjct: 329 DTYHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHI 388
Query: 121 YDIMKIKL--SSMPKES------ENSDTPLTEVYKRS-YDVCR-----QLYEKELLSENS 166
YD ++ +L +S+P + E S +VY+R YD Y +LLS NS
Sbjct: 389 YDHIRNELVENSLPDNNLIDYVLEQSKKEALQVYERPVYDAATGQGPGGWY--DLLSRNS 446
Query: 167 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
+ +N +Q AV + +WRD +AR +DE V P L +A +P
Sbjct: 447 VV---------VNREQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFRVAHTMPLDLGT 497
Query: 227 LRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
L R L ++ +L +IK + A+
Sbjct: 498 LFRTLSPVTPIVQNRAVDLLEVIKKAKDEGAD 529
>gi|342180559|emb|CCC90035.1| putative ribosomal RNA processing protein 6 [Trypanosoma congolense
IL3000]
Length = 745
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 150/252 (59%), Gaps = 4/252 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+RTEDF++D LKLR + L VF +P+ KV+HGA DI WLQ+DFG+Y+ N+F
Sbjct: 284 MQISSRTEDFIIDCLKLRSHMH-LLAPVFLEPSIVKVLHGAREDIRWLQKDFGLYVVNLF 342
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+
Sbjct: 343 DTSVALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMISYAQQDTHFLLYV 401
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLN 179
YD +K L + + + L V++ S + + YEK +L + +Y G GL+
Sbjct: 402 YDRLKQLLLNCESRATVGNM-LVHVFQESRALSLERYEKPQLDPDATYKLALGRSLGGLS 460
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
QL V + WRD AR D+S V+ ++ IA +LP +A ++ + +
Sbjct: 461 LSQLQVAREIFNWRDAAAREADDSPSAVMHISCVLSIATRLPLSANEVLKCCSPVSVIVR 520
Query: 240 RYMGPVLSIIKN 251
+ +L I+K+
Sbjct: 521 TNVMKLLQIVKS 532
>gi|414886885|tpg|DAA62899.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 951
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 135/230 (58%), Gaps = 10/230 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST+ ED+++DT+ L +G LR VF + + K+ HGAD DI+WLQRDF IY+ NMF
Sbjct: 179 MQISTQNEDYLIDTIALHDVMG-ILRPVFANSSICKIFHGADNDILWLQRDFHIYVVNMF 237
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A +L + SL YLL +C V +K Q DWR+RPL EM+ YAR D HYLLYI
Sbjct: 238 DTAKACEILLKPQKSLAYLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYI 297
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQG 175
+ + +L + S + E RS VC QLY KE+ S + + LQ
Sbjct: 298 ANCLASELHAKAYTSSDKINFFFEASHRSNMVCMQLYSKEIESPPGASSATSILSRNLQT 357
Query: 176 AGLNAQQLA----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
G ++++ + +V C WRD++AR DES YVLP++ + +A LP
Sbjct: 358 HGFDSKKSSEVKDLVWKFCAWRDLMARMHDESLRYVLPDQAIAALAVSLP 407
>gi|242767043|ref|XP_002341292.1| exosome component 3'-5' exonuclease [Talaromyces stipitatus ATCC
10500]
gi|218724488|gb|EED23905.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
ATCC 10500]
Length = 771
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/266 (39%), Positives = 145/266 (54%), Gaps = 25/266 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTL+ + L EVF DP KV HG+ DIVWLQRD G+Y+ ++F
Sbjct: 269 MQISTRDKDWVVDTLQPWREDLQRLNEVFTDPNILKVFHGSTMDIVWLQRDLGLYVVSLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL + A+K+YQ ADWR+RPL DEML+YAR DTHYLLYI
Sbjct: 329 DTYHAAVALGFPKRSLKFLLEKYAHYEADKKYQMADWRLRPLTDEMLKYARADTHYLLYI 388
Query: 121 YDIMKIKL--SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG- 177
YD ++ +L S PK ++ + V +RS Q YE+ + G QGAG
Sbjct: 389 YDCLRNELLEKSTPKRNQ-----IDYVLERSKTEALQRYERPVYD------TLGGQGAGG 437
Query: 178 -----------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
+Q AV + EWRD +AR +DE V P L +A +P
Sbjct: 438 WYDLLSRNSGQFTKEQFAVFKAVHEWRDRVAREEDEGLQCVFPRHVLFRVAVAMPVDKHT 497
Query: 227 LRRLLKSKHSYIERYMGPVLSIIKNS 252
L + L ++ + +L IIK +
Sbjct: 498 LFKTLSPVTLIVKDRVTELLDIIKKA 523
>gi|358368335|dbj|GAA84952.1| exosome complex exonuclease Rrp6 [Aspergillus kawachii IFO 4308]
Length = 784
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 146/271 (53%), Gaps = 25/271 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MF
Sbjct: 269 MQISTRDKDWVVDTLKPWREELQVLNEVFTDPNILKVLHGSSMDIIWLQRDLGLYVVGMF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+I
Sbjct: 329 DTYHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHI 388
Query: 121 YDIMKIKL--SSMPKES------ENSDTPLTEVYKRS-YDVCR-----QLYEKELLSENS 166
YD ++ +L +S+P + E S +VY+R YD Y +LLS NS
Sbjct: 389 YDHIRNELVENSLPDNNLVDYVLEQSKKEALQVYERPVYDAATGQGPGGWY--DLLSRNS 446
Query: 167 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
+ +N +Q AV + +WRD +AR +DE V P L +A +P
Sbjct: 447 VV---------VNREQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFRVAHTMPLDLGT 497
Query: 227 LRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 257
L R L ++ +L +IK + A
Sbjct: 498 LFRTLSPVTPIVQNRAVDLLEVIKKAKDEGA 528
>gi|409075144|gb|EKM75528.1| hypothetical protein AGABI1DRAFT_79866 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 882
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 156/313 (49%), Gaps = 60/313 (19%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDFVVD + LR ++ L EVF DP KV HGA+ DIVWLQ+DF +Y+ N+F
Sbjct: 283 MQISTREEDFVVDVIALRDEME-VLNEVFTDPKIVKVFHGAESDIVWLQQDFNLYVVNLF 341
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS++L+ R+ L LL +C +K YQ ADWR+RPLP EML YAR DTH+LL+I
Sbjct: 342 DTYHASKLLEFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPKEMLEYARSDTHFLLFI 401
Query: 121 YDIMKIK------------------------------LSSMPKESENSDTPL----TEVY 146
YD ++ L + P + S PL V
Sbjct: 402 YDNLRNALLDRGGPASRSRSSSPPNASTSLSTPPANILRTPPPTAHASKNPLHASINHVL 461
Query: 147 KRSYDVCRQLYEKELLSENSYLHIYGL------------------------QGAGLNAQQ 182
RS + C ++Y KE+ +S G +G + Q
Sbjct: 462 TRSSETCLRVYVKEVYDRSSGTGSNGWDTLARKWNKPLFTALSFSYQSSSDEGHNVPEMQ 521
Query: 183 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK-HSYIERY 241
AV + WR+ ++R +DEST YVLPN+ L IA+ P L RL S ++R
Sbjct: 522 KAVYRAVHWWRESVSREEDESTRYVLPNQYLFRIAEAPPGDLGNLLRLFGSSVPVVVKRR 581
Query: 242 MGPVLSIIKNSMQ 254
+L +++N+++
Sbjct: 582 AKELLDVVRNAVK 594
>gi|393910372|gb|EFO27811.2| 3'-5' exonuclease [Loa loa]
Length = 844
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMF
Sbjct: 304 MQISTRQTDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMF 362
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+
Sbjct: 363 DTYKAMRVLNYSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTGAHKTYARSDTHYLLHC 422
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LN 179
YD ++IKL + + + L VY S C +Y+K + + Y + L G LN
Sbjct: 423 YDQLRIKLLD---QGDAAGNLLEYVYNESAQTCLTVYKKPVFESDGYEKL--LVGRKPLN 477
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
++Q +A L +WRD ARADDES YVLP L++IA+ LP
Sbjct: 478 SRQQFALAALWKWRDERARADDESPQYVLPCHMLLQIAEVLP 519
>gi|115396098|ref|XP_001213688.1| exosome component 3'-5' exonuclease [Aspergillus terreus NIH2624]
gi|114193257|gb|EAU34957.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 761
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 139/256 (54%), Gaps = 9/256 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP+ KV+HG+ DI+WLQRD G+Y+ MF
Sbjct: 266 MQISTREKDWVVDTLKPWREELQMLNEVFTDPSILKVLHGSSMDIIWLQRDLGLYIVGMF 325
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL+YLL F A+K YQ ADWR+RPLP M YAR DTHYLL+I
Sbjct: 326 DTYHAACALNYPKRSLKYLLQKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLHI 385
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQ 174
YD ++ +L + S +++ + V +RS Q YE+ + +
Sbjct: 386 YDHLRNELI---RNSTSNNNLIDYVLERSKTEALQRYERPVYDAALGQGPGGWYDYLSRS 442
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
++ +Q AV + +WRD +AR +DE V P L +A+ +P L R L
Sbjct: 443 SVVVSKEQFAVFKAVHQWRDQVAREEDEGVQCVFPKHVLFRVAQVMPLDLGTLFRTLSPV 502
Query: 235 HSYIERYMGPVLSIIK 250
+ + +L +IK
Sbjct: 503 TTIAKERASELLEVIK 518
>gi|312066427|ref|XP_003136265.1| 3'-5' exonuclease [Loa loa]
Length = 845
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMF
Sbjct: 304 MQISTRQTDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMF 362
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+
Sbjct: 363 DTYKAMRVLNYSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTGAHKTYARSDTHYLLHC 422
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LN 179
YD ++IKL + + + L VY S C +Y+K + + Y + L G LN
Sbjct: 423 YDQLRIKLLD---QGDAAGNLLEYVYNESAQTCLTVYKKPVFESDGYEKL--LVGRKPLN 477
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
++Q +A L +WRD ARADDES YVLP L++IA+ LP
Sbjct: 478 SRQQFALAALWKWRDERARADDESPQYVLPCHMLLQIAEVLP 519
>gi|345564419|gb|EGX47382.1| hypothetical protein AOL_s00083g475 [Arthrobotrys oligospora ATCC
24927]
Length = 806
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 149/272 (54%), Gaps = 11/272 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +D+++DTLKLR ++ L EVF +P KV HGA DI+WLQRD IY+ +F
Sbjct: 269 MQVSTREQDWIIDTLKLRDEL-EVLNEVFANPGIVKVFHGAFMDIIWLQRDLNIYVVGLF 327
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L +SL +LL + +A+K YQ ADWRVRP+P EML YAR DTH+LL+I
Sbjct: 328 DTYDAARSLGFTGHSLAFLLKKYINFDADKSYQLADWRVRPIPQEMLDYARSDTHFLLFI 387
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQ 174
YD M+ +L + K + + + V S + C + Y+ E +L I
Sbjct: 388 YDNMRNEL--IGKSNAAEEDKIETVQNNSKETCLKTYDTEPYDPVNGGGSRGWLSILKHN 445
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+Q +V + WRD +AR +D++ +V+ L+ A+Q+P AA L S
Sbjct: 446 AVNFTDEQFSVFRAVHAWRDRVAREEDDNPHFVMSKNHLLSFARQMPVDAAA--ALSVSS 503
Query: 235 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKL 266
+ + + ++S IK + N F + L
Sbjct: 504 NPLLRSKLSDLVSTIKEAKANPVPFSSVQHLL 535
>gi|119491955|ref|XP_001263472.1| exosome component 3'-5' exonuclease [Neosartorya fischeri NRRL 181]
gi|119411632|gb|EAW21575.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
NRRL 181]
Length = 765
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 150/277 (54%), Gaps = 27/277 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MF
Sbjct: 266 MQISTRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMF 325
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A+K YQ ADWR+RPLP M YAR DTHYLLYI
Sbjct: 326 DTYHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYI 385
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYG 172
YD ++ +L E+ D L + V ++S + Q YE+ + + Y ++Y
Sbjct: 386 YDHLRNEL----LENSTPDHNLVDYVLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYR 441
Query: 173 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 232
A L+ +Q AV + +WRD +AR +DE V P L +IA+ +P L R L
Sbjct: 442 -NPAVLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTL- 499
Query: 233 SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEE 269
PV I K+ AA+ + QK K E
Sbjct: 500 ----------SPVTPIAKD---RAADLLEVIQKAKIE 523
>gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum]
Length = 892
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 134/227 (59%), Gaps = 11/227 (4%)
Query: 1 MQISTRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 58
MQIST +D+++D + +Q+ L E F +P KV HG++ D+ WLQRDFGIY+
Sbjct: 312 MQISTDEKDYIIDPFPIWNDMQI---LNEPFTNPNILKVFHGSEYDVQWLQRDFGIYVVG 368
Query: 59 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
MFDT A VL + SL +L+ C V +KE Q ADWRVRPL + YAR DTHYLL
Sbjct: 369 MFDTFCAMHVLNFAKYSLAHLVQSICNVTLDKELQKADWRVRPLTTAHIEYARSDTHYLL 428
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AG 177
Y YD ++ +L + ES N L Y S +CR +Y+K Y + L+G
Sbjct: 429 YCYDTLRQRLINEGNESNNL---LRSTYNESALICRTVYKKPKFESEGYETL--LRGRKS 483
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 224
LN++QL + L +WRD ARA+DES YVLPN L++IA+ LP A
Sbjct: 484 LNSRQLYALKALWKWRDDRARAEDESLEYVLPNHMLLQIAEVLPREA 530
>gi|302916517|ref|XP_003052069.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
77-13-4]
gi|256733008|gb|EEU46356.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
77-13-4]
Length = 833
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 143/242 (59%), Gaps = 15/242 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL+ L EVF +P KV HGA D+VWLQRD G+Y+ +F
Sbjct: 264 MQISTREKDWIVDTLQPWRHKLEVLNEVFTNPKIIKVFHGAYMDMVWLQRDLGLYVNGLF 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A L SL +LL F +A+K+YQ ADWR+RP+P+EM+ YAR DTHYLLYI
Sbjct: 324 DTFFACDQLHYPAKSLAFLLSKFVDFDADKQYQLADWRIRPIPEEMMYYARSDTHYLLYI 383
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL---------YEKEL--LSENSYLH 169
YD ++ +L + +S+ P T + +R+ + R+L Y++E S Y +
Sbjct: 384 YDKVRNELVATSDKSK----PETNLIERALEKSRELSLSRYENPGYDEETGEGSRGWYGY 439
Query: 170 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
++ L+++Q AV + +WRD ARA+DE+ YVL R + EIA+ P A L
Sbjct: 440 VFKNSHMALDSEQFAVFKAVWKWRDDTARAEDENPNYVLSTRDITEIARLNPPDAKALHS 499
Query: 230 LL 231
LL
Sbjct: 500 LL 501
>gi|169767462|ref|XP_001818202.1| exosome component 3'-5' exonuclease [Aspergillus oryzae RIB40]
gi|83766057|dbj|BAE56200.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871959|gb|EIT81108.1| exosome 3'-5' exoribonuclease [Aspergillus oryzae 3.042]
Length = 760
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 169/335 (50%), Gaps = 23/335 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP+ KV HG+ DI+WLQRD G+Y+ MF
Sbjct: 261 MQISTRDKDWVVDTLKPWREELQMLNEVFADPSILKVFHGSSMDIIWLQRDLGLYVVGMF 320
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+I
Sbjct: 321 DTYHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHI 380
Query: 121 YDIMKIKLSSMPKESENSDTP----LTEVYKRSYDVCRQLYEKELLSENS------YLHI 170
+D ++ +L ENS TP + V ++S D Q +E+ + +
Sbjct: 381 FDHLRNEL------IENS-TPENNLIDYVLEKSKDEALQRFERSPYDAATGQGPGGWYDY 433
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
A L+ +Q AV + +WRD +AR +DE V P L ++A +P L R
Sbjct: 434 LSRNPAVLSKEQFAVFKAVHQWRDAVAREEDEGVQCVFPKHVLFKVAHAMPLDLGTLFRT 493
Query: 231 LKSKHSYIERYMGPVLSIIKNSMQNAAN----FEVIAQKLKEERMEVASEETEVLVLDTS 286
L + +L++IKN+ A+ +V + + R A+E + LV
Sbjct: 494 LSPVTPIAKDRAADLLAVIKNAKIEGADGPEWRDVYVKPTRAGRSVPATETEQGLVTPPI 553
Query: 287 SNLKIPNVGRESVDGV-DALVGTTMP-HPPAYTQL 319
P R V A++ T P PP Y+ +
Sbjct: 554 GEENFPTAARCEVSQFWGAVLDTREPLTPPEYSAV 588
>gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
nagariensis]
gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
nagariensis]
Length = 191
Score = 183 bits (465), Expect = 2e-43, Method: Composition-based stats.
Identities = 85/138 (61%), Positives = 101/138 (73%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRT D+VVDTL LR Q+GP L VF DP KV HGAD D+ WLQRDF ++L NMF
Sbjct: 41 MQISTRTTDYVVDTLALRNQLGPALARVFADPRVVKVFHGADSDVDWLQRDFSLFLVNMF 100
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL L L YLL CGV A+K YQ ADWRVRPL ML YAR DTHYLLY+
Sbjct: 101 DTGQAARVLGLPSFGLAYLLESICGVQADKRYQMADWRVRPLSPPMLHYARCDTHYLLYV 160
Query: 121 YDIMKIKLSSMPKESENS 138
YD ++ +L+++P + +S
Sbjct: 161 YDKLREQLAALPDQRVSS 178
>gi|402080291|gb|EJT75436.1| exosome complex exonuclease Rrp [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 834
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 155/278 (55%), Gaps = 6/278 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +D+VVDTLK + L +VF DP KV HGA DI+WLQRD G+Y+ +F
Sbjct: 273 MQVSTRDKDWVVDTLKPWRRRLEVLNQVFADPKILKVFHGAFMDIIWLQRDLGLYVVGLF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L SL YLL F A+K +Q ADWR+RPL EML YAR DTHYLLY+
Sbjct: 333 DTFHAAEALLYPSKSLAYLLKKFADFEADKRFQMADWRIRPLSKEMLYYARSDTHYLLYV 392
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----KELLSENSYLHIYGLQG- 175
YD+M+ +L + + + + ++S + Q +E + + + G+
Sbjct: 393 YDMMRNELVKQSRRGDPDGDLVEKALQKSKETSLQRHEPYTSDPVTGKGTRGWFNGISRI 452
Query: 176 -AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ ++Q AV L WRD AR +DES Y++ + L+E ++ +P++ +LR+L
Sbjct: 453 PSNFTSEQFAVFRELHRWRDETARREDESPMYIMSQQVLVEASRAMPSSPNELRKLFFHP 512
Query: 235 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 272
+ ++ + ++ +IK + + A + LK +R++
Sbjct: 513 SNPLKDGVNQLVRLIKRAREKGAEGPTLMDVLKADRVD 550
>gi|407404412|gb|EKF29876.1| hypothetical protein MOQ_006321 [Trypanosoma cruzi marinkellei]
Length = 713
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/270 (38%), Positives = 156/270 (57%), Gaps = 9/270 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+ED ++D LKLR + L VF + KV+HGA DI WLQ+DFG+YL N F
Sbjct: 254 MQISTRSEDILIDCLKLRSSMH-LLAPVFLNSNILKVLHGAREDIRWLQKDFGLYLVNFF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG A + L + + L + + HFC V NK+YQ ADWR+RP+P EM+ YAR+DTH+LLY+
Sbjct: 313 DTGIALQTLHMP-HGLAFAVDHFCQVKLNKKYQTADWRIRPIPAEMVAYARQDTHFLLYV 371
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLN 179
YD +K L + + + L V S + ++YEK +L + SY G GL+
Sbjct: 372 YDRLKTLLLNSEGRASIGNL-LVHVLNESRRLSLEIYEKPQLDPDASYKVALGRSLGGLS 430
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+ QL V + WRD AR D+S VL ++ IA +LPT+A + + +
Sbjct: 431 SMQLQVAREIFNWRDATAREVDDSPPAVLHLSAVLAIATKLPTSANDVLKCCTPVSMVVR 490
Query: 240 RYMGPVLSIIKNSMQNAA-----NFEVIAQ 264
+ ++ I+K+++ + A +F+V A+
Sbjct: 491 TNVTRLVQIVKDAVGDDAIAKNSDFDVKAE 520
>gi|452004410|gb|EMD96866.1| hypothetical protein COCHEDRAFT_1085740 [Cochliobolus
heterostrophus C5]
Length = 792
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 151/291 (51%), Gaps = 15/291 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP+ KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 256 MQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAYMDIMWLQRDLGLYIVGLF 315
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L SL YLL A K+YQ ADWR+RPL E+ YAR DTH+LLYI
Sbjct: 316 DTYHAARALGYPGASLAYLLERHVKFTAQKQYQLADWRIRPLSPELFEYARADTHFLLYI 375
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQ 174
YD M+ +L S+ + +V ++S + Q YE + L + + +
Sbjct: 376 YDNMRNELIEKSDFSDPDKNKVQDVLEKSKETSLQRYEHPIYDSETGLGSSGWYKLISRT 435
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+Q AV + WRD + R +DES +++PN + +A+ +P A L ++
Sbjct: 436 PVQFTPEQFAVFRAVHRWRDDLGRKEDESPLFIMPNHAVFSVARAMPADKAALFNAIQHV 495
Query: 235 ----HSYIERYMGPVLSIIKNSMQNA---ANFEVIAQKLKEERM--EVASE 276
S+ E +G V+ K + + I LK ER E A+E
Sbjct: 496 SHIIRSHAEELVGVVVEAKKEGLHGPELHTTLQTIEDMLKAERAGSETAAE 546
>gi|255934162|ref|XP_002558362.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582981|emb|CAP81189.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 756
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 136/258 (52%), Gaps = 9/258 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTL+ + L EVF DP KV+HG+ DI+WLQRD G+Y+ MF
Sbjct: 263 MQISTRDKDWVVDTLQPWREDLQMLNEVFADPKILKVLHGSTMDIIWLQRDLGLYVVGMF 322
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A+K YQ ADWR RPLP M YAR DTHYLLYI
Sbjct: 323 DTFHAASALGFPKRSLKFLLSKFVNFEADKRYQTADWRARPLPPAMFDYARSDTHYLLYI 382
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQ 174
YD ++ L E + + V +RS Q YE+ + + +
Sbjct: 383 YDRLRNDLIDNSTEDASH---IDYVNERSKHEALQRYERPVYDAVNGYGPGGWYDLLWRH 439
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
A L+ +Q AV + +WRD +ARA+DE V P L ++A +P L R L
Sbjct: 440 SANLSKEQFAVFKAVHQWRDEVARAEDEGWQCVFPKHMLFKLATVMPLDMGSLFRTLSPM 499
Query: 235 HSYIERYMGPVLSIIKNS 252
+ +L +IK +
Sbjct: 500 TPITKERSHDLLEVIKKA 517
>gi|119195137|ref|XP_001248172.1| exosome component 3'-5' exonuclease [Coccidioides immitis RS]
gi|392862584|gb|EAS36760.2| exosome complex exonuclease Rrp6 [Coccidioides immitis RS]
Length = 766
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 142/259 (54%), Gaps = 11/259 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL + L EVF DP KV+HG+ D++WLQRD G+YL +F
Sbjct: 269 MQISTREKDWIVDTLLPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS L + SL++LL F + A K+YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 329 DTYHASVALNYPKKSLKFLLDKFVNLEAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS------YLHIYGL 173
YD ++ +L E DT L + V +S + Q YE+ + + + +
Sbjct: 389 YDNLRNELI----EKSTPDTNLIDYVQDKSKEEALQRYERPVYDAETGQGSGGWYDVLSR 444
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 233
+ L +QLAV + WRD AR DDE VL R L IA +P+ A L +L
Sbjct: 445 SPSLLKREQLAVFKAVHRWRDQTARTDDEGVQSVLSKRALFAIAHGMPSDQAALLKLAIP 504
Query: 234 KHSYIERYMGPVLSIIKNS 252
+ + + +L +IK++
Sbjct: 505 VSPSLRKRLSELLKVIKDA 523
>gi|239610958|gb|EEQ87945.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ER-3]
gi|327351664|gb|EGE80521.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ATCC
18188]
Length = 814
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 144/258 (55%), Gaps = 9/258 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+YL +F
Sbjct: 270 MQISTREKDWIVDTLKPWREELQILNEVFADPKIIKVLHGSTMDVIWLQRDLGLYLVGLF 329
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 330 DTYHAAVALNYPKRSLKFLLEKFVNFQAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYI 389
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ------ 174
YD ++ +S+ + S + + V +RS Q YE+ + + + G Q
Sbjct: 390 YDQIR---NSLVEHSTPDNNLIAYVLERSKQEALQRYERPVYNAETGQGSGGWQDMLIRN 446
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ + +Q AV + +WRD IAR++DE YVL ++L +IA +P A L R +
Sbjct: 447 SSLFSREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPASLLRTISPV 506
Query: 235 HSYIERYMGPVLSIIKNS 252
+ ++ +IK +
Sbjct: 507 SPLVRARASELVQVIKQA 524
>gi|261206146|ref|XP_002627810.1| exosome component 3'-5' exonuclease [Ajellomyces dermatitidis
SLH14081]
gi|239592869|gb|EEQ75450.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
SLH14081]
Length = 814
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 144/258 (55%), Gaps = 9/258 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+YL +F
Sbjct: 270 MQISTREKDWIVDTLKPWREELQILNEVFADPKIIKVLHGSTMDVIWLQRDLGLYLVGLF 329
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 330 DTYHAAVALNYPKRSLKFLLEKFVNFQAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYI 389
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ------ 174
YD ++ +S+ + S + + V +RS Q YE+ + + + G Q
Sbjct: 390 YDQIR---NSLVEHSTPDNNLIAYVLERSKQEALQRYERPVYNAETGQGSGGWQDMLIRN 446
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ + +Q AV + +WRD IAR++DE YVL ++L +IA +P A L R +
Sbjct: 447 SSLFSREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPASLLRTISPV 506
Query: 235 HSYIERYMGPVLSIIKNS 252
+ ++ +IK +
Sbjct: 507 SPLVRARASELVQVIKQA 524
>gi|322708171|gb|EFY99748.1| exosome complex exonuclease Rrp6, putative [Metarhizium anisopliae
ARSEF 23]
Length = 830
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 137/238 (57%), Gaps = 7/238 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR D++VDTL+ L +VF DP+ KV HGA D+VWLQRD G+Y+ +F
Sbjct: 264 MQVSTRDRDWIVDTLQPWRHKLEVLNDVFADPSVVKVFHGAYMDMVWLQRDLGLYVNGLF 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A +L SL +LL F G +A+K+YQ ADWR+RP+P++ML YAR DTHYLLYI
Sbjct: 324 DTYFACNLLNYPGRSLAFLLSKFVGFDADKQYQLADWRIRPIPEDMLYYARSDTHYLLYI 383
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGL 173
YD ++ +L +S+ + + +RS ++ +E +E + Y +++
Sbjct: 384 YDNVRNELIEASDKSDPEKDYINQALERSRELALSRHENPDYNETTGEGARGWYNYVFKH 443
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
LN +Q ++ L +WRD AR +DES +VL + EIA+ P L LL
Sbjct: 444 SHLALNGEQFSIFKALWKWRDETARQEDESPNFVLGPTNVTEIARVNPPDVKALHSLL 501
>gi|189237006|ref|XP_966807.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 947
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 135/224 (60%), Gaps = 7/224 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST +D+++D L LR ++ L EVF T K+ HGAD+DI WLQRD +Y+ NMF
Sbjct: 297 IQISTEDKDYLIDALALRDKLS-ILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMF 355
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++ L+ SL +L+ FC V NK++Q ADWR+RPLPDE+ YAREDTHYL+YI
Sbjct: 356 DTHQAAKALQYPALSLAFLMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYI 415
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y +MK +L ++ D L V +RS +VC++ Y K +L E+S+L +Y +
Sbjct: 416 YKMMKRELLH---KTNKCDKLLRSVIERSTEVCKKRYFKPILHEDSHLELYRKCKKMFDN 472
Query: 181 QQLAVV---AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q+ + S YVLPN L++I++ LP
Sbjct: 473 RQMYALKEXXXXXXXXXXXXXXXXXSCSYVLPNHMLLQISELLP 516
>gi|406606562|emb|CCH42061.1| exosome complex exonuclease [Wickerhamomyces ciferrii]
Length = 744
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 111/272 (40%), Positives = 151/272 (55%), Gaps = 30/272 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+++DTL LR + L VF DP KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 258 MQISTRDQDWLIDTLALREDLK-ILNSVFTDPKITKVFHGAFMDIIWLQRDLGLYIVSLF 316
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L ++SL YLL F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 317 DTYHASRQLGFPKHSLAYLLERFAHFKTSKKYQLADWRIRPLTGPMKLYARSDTHFLLNI 376
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----KELLSEN----------- 165
+D +L +M ES LT V S +V R+ +E + L S N
Sbjct: 377 FD----QLRNMLIES----NKLTNVLFESRNVARRRFEYSSFRPLASTNVVSPIEKPEPW 428
Query: 166 -SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 224
S L+ Y L+A + AVV L +WRD IA+ DDES YV+PN+ L+ +A +PT
Sbjct: 429 KSLLYQY-----NLSASREAVVRSLYQWRDQIAKQDDESPRYVMPNQLLVSLASLVPTDP 483
Query: 225 AKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 256
A + ++ + + +IK SM+ A
Sbjct: 484 AGVLSSSNLISDHVRKNAKEISELIKRSMKEA 515
>gi|451855365|gb|EMD68657.1| hypothetical protein COCSADRAFT_157073 [Cochliobolus sativus
ND90Pr]
Length = 791
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 150/293 (51%), Gaps = 16/293 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP+ KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 256 MQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAYMDIMWLQRDLGLYIVGLF 315
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L SL YLL A K+YQ ADWR+RPL E+ YAR DTH+LLYI
Sbjct: 316 DTYHAARALGYPGASLAYLLERHVKFTAQKQYQLADWRIRPLSPELFEYARADTHFLLYI 375
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQ 174
YD M+ +L S + +V ++S + Q YE + L + + +
Sbjct: 376 YDNMRNELVEKSDFSNPDKNKVHDVLEKSKETSLQRYEHPIYDSETGLGSSGWYKLISRT 435
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+Q AV + WRD + R +DES +++PN + +A+ +P A L ++
Sbjct: 436 PVQFTPEQFAVFRAVHRWRDDLGRKEDESPLFIMPNHAVFSVARAMPADKAALFNAIQHV 495
Query: 235 ----HSYIERYMGPVLSIIKNSMQNA---ANFEVIAQKLKEERMEVASEETEV 280
S+ E +G V+ K + + I LK ER A ET V
Sbjct: 496 SHIIRSHAEELVGVVVEAKKEGLHGPELHTTLQTIEDMLKAER---AGPETAV 545
>gi|343471692|emb|CCD15945.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 604
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 150/252 (59%), Gaps = 4/252 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+RTEDF++D LKLR + L VF +P+ KV+HGA DI WLQ+DFG+Y+ N+F
Sbjct: 284 MQISSRTEDFIIDCLKLRSHMH-LLAPVFLEPSIVKVLHGAREDIRWLQKDFGLYVVNLF 342
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+
Sbjct: 343 DTSVALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMISYAQQDTHFLLYV 401
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLN 179
YD +K L + + + L V++ S + + YEK +L + +Y G GL+
Sbjct: 402 YDRLKQLLLNCESRATVGNM-LVHVFQESRALSLERYEKPQLDPDATYKLALGRSLGGLS 460
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
QL V + WRD AR D+S V+ ++ IA +LP +A ++ + +
Sbjct: 461 LSQLQVAREIFNWRDAAAREADDSPSAVMHISCVLSIATRLPLSANEVLKCCSPVSVIVR 520
Query: 240 RYMGPVLSIIKN 251
+ +L I+K+
Sbjct: 521 TNVMKLLQIVKS 532
>gi|449493231|ref|XP_004159228.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101225221 [Cucumis sativus]
Length = 877
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 136/238 (57%), Gaps = 12/238 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST ED++VDT+ L + LR VF + KV HGAD DI+WLQRDF IY+ N+F
Sbjct: 154 IQISTHKEDYLVDTIALHDSLN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLF 212
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV NK Q DWR RPLP +M++YAR D HYLLYI
Sbjct: 213 DTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRQRPLPADMVQYARTDAHYLLYI 272
Query: 121 YDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKEL--------LSENSYLHI 170
+ + ++L + + S D L E +RS C QLY KE S H+
Sbjct: 273 ANCLLVELKQVNENSSTDDKFNFLLEASRRSNMTCLQLYSKETEGSPGESAASSIWSRHL 332
Query: 171 YGLQGAGL-NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
G+ L + + V LC WRD++AR DES YVL ++ ++ IA Q+P +L
Sbjct: 333 NSQGGSALISCKTQDRVRRLCAWRDLMARVHDESLRYVLSDQAIVAIAIQVPKNTGEL 390
>gi|449453692|ref|XP_004144590.1| PREDICTED: uncharacterized protein LOC101204374 [Cucumis sativus]
Length = 877
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 136/238 (57%), Gaps = 12/238 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST ED++VDT+ L + LR VF + KV HGAD DI+WLQRDF IY+ N+F
Sbjct: 154 IQISTHKEDYLVDTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLF 212
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV NK Q DWR RPLP +M++YAR D HYLLYI
Sbjct: 213 DTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRQRPLPADMVQYARTDAHYLLYI 272
Query: 121 YDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKEL--------LSENSYLHI 170
+ + ++L + + S D L E +RS C QLY KE S H+
Sbjct: 273 ANCLLVELKQVNENSSTDDKFNFLLEASRRSNMTCLQLYSKETEGSPGESAASSIWSRHL 332
Query: 171 YGLQGAGL-NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
G+ L + + V LC WRD++AR DES YVL ++ ++ IA Q+P +L
Sbjct: 333 NSQGGSALISCKTQDRVRRLCAWRDLMARVHDESLRYVLSDQAIVAIAIQVPKNTGEL 390
>gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica]
gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica CLIB122]
Length = 738
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 150/262 (57%), Gaps = 22/262 (8%)
Query: 1 MQISTRTEDFVVDTLKLR-VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+Q+S+R +D+++DT+ LR +++ EV DP KV+HGA DI WLQRDFG+Y+ ++
Sbjct: 262 VQVSSREQDYIIDTIALRNLEI---FNEVLTDPKIVKVLHGATMDIQWLQRDFGLYIVSL 318
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A++ L L+ +SL +LL H+ +K+YQ +DWR+RP+ E L YAR DTH+LL
Sbjct: 319 FDTFHAAQALGLKGHSLAFLLQHYANFVTSKKYQLSDWRIRPMSPEQLLYARADTHFLLN 378
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
IYD +K L K + V ++S Q YE YL + +G G+N
Sbjct: 379 IYDQLKNALVQKDK--------IEGVLEKSRQTASQRYEYTGYDPRYYLKSFDYEG-GIN 429
Query: 180 ---------AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
++V L WRD +AR +DESTGYV+PN L+ +A ++P T + +
Sbjct: 430 RLISQFHITGPSVSVAKALFLWRDSMARKEDESTGYVMPNYLLVSLANRMPQTPEAVFSV 489
Query: 231 LKSKHSYIERYMGPVLSIIKNS 252
KS + + + +L +IK+S
Sbjct: 490 SKSLPLLVRKNVEEILDVIKDS 511
>gi|339252698|ref|XP_003371572.1| exosome component 10 [Trichinella spiralis]
gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis]
Length = 827
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 138/221 (62%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR D++VD + ++ L E F DP KVMHG+ +DI WLQRDFGIY+ N+F
Sbjct: 294 LQISTRDTDYIVDPFPIWHEMY-ILNEPFVDPNIVKVMHGSSQDIQWLQRDFGIYVVNLF 352
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A VL++ + SL++L+ GVN +K YQ ADWR+RPL +ML YAR D+HYLLY
Sbjct: 353 DTYHAMEVLEMPQRSLKFLVKELVGVNLDKSYQTADWRIRPLGSKMLAYARSDSHYLLYC 412
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+D+++ +L + + +E +D + V KRS D C Q+Y+K+ +E + L+
Sbjct: 413 WDVLRNQL--LNRGNEYNDLMMI-VLKRSSDTCLQVYKKKFPNEFELRKLESKFPFNLDN 469
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+Q + L WRD +AR DES Y++ N TL +A +LP
Sbjct: 470 RQKYALRMLYYWRDGVARITDESVYYIMRNETLRNLAAKLP 510
>gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102]
Length = 831
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 138/238 (57%), Gaps = 7/238 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +D++VDTL+ L +VF +P+ KV HGA D+VWLQRD G+Y+ +F
Sbjct: 264 MQVSTRDQDWIVDTLQPWRHKLEVLNDVFANPSIVKVFHGAYMDMVWLQRDLGLYVNGLF 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A +L SL +LL F G +A+K+YQ ADWR+RP+P+EML YAR DTHYLLYI
Sbjct: 324 DTYFACDLLNYPGKSLAFLLSKFVGFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLYI 383
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGL 173
+D ++ +L +S+ + + +RS ++ +E +E + Y +++
Sbjct: 384 FDNVRNELIEASDKSDPEKDYINQALERSRELALSRHENPDYNETTGEGARGWYNYVFKH 443
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
LN +Q ++ L +WRD AR +DES +VL + EIA+ P L LL
Sbjct: 444 SHLALNGEQFSIFKALWKWRDETARQEDESPNFVLGATNVTEIARVNPPDVKALHSLL 501
>gi|410081706|ref|XP_003958432.1| hypothetical protein KAFR_0G02660 [Kazachstania africana CBS 2517]
gi|372465020|emb|CCF59297.1| hypothetical protein KAFR_0G02660 [Kazachstania africana CBS 2517]
Length = 735
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 148/268 (55%), Gaps = 21/268 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDT+ LR + L EVF DP+ KV+HGA DI+WLQRD G+Y+ ++F
Sbjct: 254 MQISTRETDYLVDTIALRNDLK-VLNEVFTDPSVVKVLHGAFMDIIWLQRDLGLYIVSLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L R+SL YLL F +K+YQ ADWRVRPL M YAR DTH+LL I
Sbjct: 313 DTFHASRALGFPRHSLAYLLEEFANFKTSKKYQLADWRVRPLSKAMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYG--- 172
YD ++ +L K L V S +V ++ +E S N Y +
Sbjct: 373 YDQLRNRLVETNK--------LVGVLNESRNVAKRRFEYSKFRPRVPSPNVYSALEKEDP 424
Query: 173 ----LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
+ + +++ ++ GL EWRD+IAR DDES Y++PN+ ++ + PT A +
Sbjct: 425 WRTLMFQYNIPSEREDLLKGLFEWRDMIARRDDESPRYIMPNQLMVTLVAYTPTDPAGVI 484
Query: 229 RLLKSKHSYIERYMGPVLSIIKNSMQNA 256
+ Y+ + ++IKN++ A
Sbjct: 485 SASQVVTDYVRSNSKIIANLIKNALTRA 512
>gi|169617554|ref|XP_001802191.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
gi|111059251|gb|EAT80371.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
Length = 805
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 140/260 (53%), Gaps = 16/260 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 273 MQISTRDKDWIVDTLKPWRRKLECLNEVFADPNILKVLHGAYMDIMWLQRDLGLYIVGLF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L SL YLL A K+YQ ADWR+RPL E+ YAR DTH+LLYI
Sbjct: 333 DTHHAARSLGYPGGSLAYLLERHVQFKAQKQYQLADWRIRPLGKELFEYARADTHFLLYI 392
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
+D M+ +L S+ + +V +S +V Q YE + Y GL AG
Sbjct: 393 FDNMRNELVERSDFSDPEKNKVQDVLIKSKEVALQRYEHPV-----YDAKLGLGSAGWHK 447
Query: 178 --------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
QQ +V + +WRD ++R +DES +++PN + +A+ +P A L
Sbjct: 448 LIMRTPVQFTPQQFSVFRAVHQWRDSLSRKEDESPLFIMPNHAVFSVARAMPVDKAALFN 507
Query: 230 LLKSKHSYIERYMGPVLSII 249
++ I ++S+I
Sbjct: 508 AIQHVSHIIRGKADELVSVI 527
>gi|358394505|gb|EHK43898.1| hypothetical protein TRIATDRAFT_172602, partial [Trichoderma
atroviride IMI 206040]
Length = 816
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 135/239 (56%), Gaps = 12/239 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR +D+VVDTLK L EVF DPT KV HGA D+VWLQRD G+Y+ +F
Sbjct: 264 LQISTREKDWVVDTLKPWRHKLQVLNEVFADPTIVKVFHGAYMDMVWLQRDLGLYVNGLF 323
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS L SL +LL F +A+K YQ ADWR+RPL +EM+ YAR DTHYLLYI
Sbjct: 324 DTFFASDALHYSSRSLAFLLSKFVNFDADKRYQLADWRIRPLSEEMMFYARSDTHYLLYI 383
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELL-------SENSYLHIYG 172
YD ++ +L +S +SD L + V +RS ++ +E S + +
Sbjct: 384 YDKIRNELV----QSSDSDKHLVKRVLERSRELSLSRHENPECNAETGEGSRGWFNFVLK 439
Query: 173 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
G ++Q A+ L WRD+ AR +DE+ +VL N L EI + P A L LL
Sbjct: 440 NSQLGYKSEQFAIFRALWNWRDLTARKEDENPNFVLGNNNLTEIVRVNPPDAKALHSLL 498
>gi|170575788|ref|XP_001893385.1| 3'-5' exonuclease family protein [Brugia malayi]
gi|158600662|gb|EDP37784.1| 3'-5' exonuclease family protein [Brugia malayi]
Length = 847
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 132/223 (59%), Gaps = 9/223 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMF
Sbjct: 307 MQISTRQMDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMF 365
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+
Sbjct: 366 DTYKAMRVLNFSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTIAHKTYARSDTHYLLHC 425
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-L 178
YD ++ +L S EN+ L E VY S C +Y+K + Y + L G L
Sbjct: 426 YDQLRKRLLS----QENAANNLLEFVYNESAQTCLTVYKKPKFESDGYEKL--LVGRKPL 479
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N++Q +A L +WRD AR DDES YVLP +++IA+ LP
Sbjct: 480 NSRQQFALAALWKWRDERARTDDESPQYVLPCHMMLQIAEVLP 522
>gi|296419821|ref|XP_002839490.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635651|emb|CAZ83681.1| unnamed protein product [Tuber melanosporum]
Length = 838
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 145/261 (55%), Gaps = 11/261 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +D++VDTLKLR Q+ P L E+F +P KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 278 MQLSTRDDDYIVDTLKLRGQLEP-LNEIFTNPRVIKVLHGAFMDIIWLQRDLGLYIVGLF 336
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++ L+ R L ++L + +A+K+YQ ADWR+RPLP EML YAR DTHYLLY
Sbjct: 337 DTFYAAQALEFARFGLAHILKKYVNFDADKQYQMADWRLRPLPKEMLDYARSDTHYLLYC 396
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA---- 176
+D M+ L E S + V ++S + + Y ++ + +G
Sbjct: 397 FDCMRNSL------VEKSRGDVEHVLQKSKETALRRYIRDTYDAATGEGTFGWASQIIKF 450
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 236
N Q V + WRD AR +DES +V TL ++ +PT + + + +
Sbjct: 451 KFNRTQEFVFKAVHAWRDQAAREEDESPTFVCSRSTLGALSTAMPTDYDGVAKCIHDTNH 510
Query: 237 YIERYMGPVLSIIKNSMQNAA 257
+ +G ++ IK +++ A
Sbjct: 511 LAKSRIGEIVEAIKGALEQAG 531
>gi|357116782|ref|XP_003560156.1| PREDICTED: uncharacterized protein LOC100837522 [Brachypodium
distachyon]
Length = 909
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 138/231 (59%), Gaps = 11/231 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST+ ED+++DT+ L +G LR VF P+ K+ HGAD D++WLQRDF IY+ N+F
Sbjct: 185 VQISTQKEDYLIDTIALHDAMG-ILRPVFSSPSICKIFHGADNDVLWLQRDFHIYVVNIF 243
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV +K Q DWRVRPL EM+ YAR D HYLL I
Sbjct: 244 DTAKACEVLSKPQKSLAYLLEIYCGVTTDKTMQREDWRVRPLTPEMVEYARSDAHYLLKI 303
Query: 121 YDIMKIKLSSMPKESENSDTP-LTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQ 174
+ + +L + +S + T E +RS VC QLY KE+ S + + LQ
Sbjct: 304 ANCLASELHAKACDSPDGKTNFFLEASRRSNMVCMQLYAKEIECPPGASSAASILSRNLQ 363
Query: 175 GAGLNAQQLA----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
GL++++ + +V C WRD++AR DES Y+L ++ + +A +P
Sbjct: 364 THGLDSKKSSEVKDLVRKFCAWRDLMARMHDESLRYILSDQAIASLAVSVP 414
>gi|330926290|ref|XP_003301407.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
gi|311323973|gb|EFQ90519.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
Length = 796
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 155/297 (52%), Gaps = 15/297 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP+ KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 256 MQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAFMDIIWLQRDLGLYIVGLF 315
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L + SL YLL A K+YQ ADWR RPL E+ YAR DTH+LLYI
Sbjct: 316 DTFHAARALGYQAASLAYLLELHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYI 375
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQ 174
+D M+ +L + S + +V + S + + YE + L + +
Sbjct: 376 FDNMRNELVNKSDFSNPEKNKVQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKLISRT 435
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
A +Q +V + EWRD + R +DES +++PN + +A+ +P+ L ++
Sbjct: 436 PAQFTREQFSVFRAVHEWRDTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGLFNAIQHV 495
Query: 235 HSYIERYMGPVLSIIKNSMQNAAN-------FEVIAQKLKEERM--EVASEETEVLV 282
+ ++ ++ + + A+ + IA + ER+ E A + EV+V
Sbjct: 496 GHITRAHADELVGVVVEAKERGASGPELHEVLQAIADMQRAERVESETAPKTAEVVV 552
>gi|46123343|ref|XP_386225.1| hypothetical protein FG06049.1 [Gibberella zeae PH-1]
Length = 807
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 140/259 (54%), Gaps = 7/259 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL+ L +VF +P KV HGA DI+WLQRD G+Y+ +F
Sbjct: 263 MQISTREKDWIVDTLQPWRHKLEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLF 322
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A L SL YLL F +A+K+YQ ADWR+RPLP EML YAR DTHYLLYI
Sbjct: 323 DTFFACGQLNYPAKSLAYLLSKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYI 382
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGL 173
YD ++ +L + +++ + ++S + YE E + +I+
Sbjct: 383 YDRVRNELVAASDKTDADKDLIGRALEKSREQSLSRYEHPDYDEETGEGSRGWSSYIFKN 442
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 233
+++Q +V L +WRD AR +DEST +VL NR + EIA+ P A L LL
Sbjct: 443 SHMAFDSEQFSVFRALWKWRDDTARKEDESTNFVLGNRDISEIARINPPDAKALHSLLPL 502
Query: 234 KHSYIERYMGPVLSIIKNS 252
S + IK S
Sbjct: 503 NASLARSRFNEIWGYIKES 521
>gi|340053178|emb|CCC47466.1| putative ribosomal RNA processing protein 6 [Trypanosoma vivax
Y486]
Length = 709
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 149/257 (57%), Gaps = 4/257 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTRT+DF++D LKLR + L VF P KV+HGA DI WLQ+DFGIY+ N+F
Sbjct: 251 VQISTRTQDFIIDCLKLRASMH-LLSPVFLSPRIIKVLHGAREDIRWLQKDFGIYVVNLF 309
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + L + SL + + HFC V +K+YQ ADWRVRP+P EM+ YA++DTH+LLYI
Sbjct: 310 DTSIALQQLHMP-YSLAFAVDHFCQVKLDKKYQTADWRVRPIPIEMVSYAQQDTHFLLYI 368
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLN 179
YD + L + + L V++ S + + YEK +L + +Y G GL+
Sbjct: 369 YDRLCALLLNCEARPSVGNL-LLHVFQESRLLSLERYEKPVLEPDVTYKVALGRSLGGLS 427
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
QL V + WRD AR D+S V+ +++ IA +LP++A + R +
Sbjct: 428 KAQLQVAQEIFNWRDGAAREADDSPSAVMHLSSVLSIATRLPSSANDVLRCCSPVSVIVR 487
Query: 240 RYMGPVLSIIKNSMQNA 256
+ +L I+K+++ A
Sbjct: 488 TNVMKLLQIVKDAVGGA 504
>gi|295659299|ref|XP_002790208.1| exosome component 3'-5' exonuclease [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226281913|gb|EEH37479.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 827
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 143/261 (54%), Gaps = 19/261 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ +F
Sbjct: 269 MQISTREQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT S L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 329 DTYHGSVALNYPKRSLKFLLEKFVNFKAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
YD ++ +S+ + S + + V ++S Q YE+ + + + G G G
Sbjct: 389 YDHIR---NSLVENSTPAHNLVDYVLEKSRQEALQRYERPVYNAET-----GEGGGGWHD 440
Query: 178 --------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
+ +Q AV + +WRD +AR++DE Y+L ++L +IA +P A L R
Sbjct: 441 MLIRNSTLFSREQFAVFKAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLLR 500
Query: 230 LLKSKHSYIERYMGPVLSIIK 250
+ + M ++ +IK
Sbjct: 501 TISPVSPPVRARMSELVQVIK 521
>gi|401623674|gb|EJS41765.1| rrp6p [Saccharomyces arboricola H-6]
Length = 733
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 150/269 (55%), Gaps = 25/269 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +D++VDT++LR + L EVF DP+ KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 254 MQVSTRKKDYLVDTIELRENLH-ILNEVFTDPSIIKVFHGAFMDIIWLQRDLGLYIVSLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE--------------LLSENS 166
YD ++ KL K L V S +V ++ +E + EN
Sbjct: 373 YDQLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSKVYSPIEKENP 424
Query: 167 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
+ + + + ++ +V L +WRDVIAR DDES +V+PN+ L + PT
Sbjct: 425 WRVL--MYQYNIAPEREVLVKNLYQWRDVIARRDDESPRFVMPNQLLAALVAYTPTDVIG 482
Query: 227 LRRLLKSKHSYIERYMGPVLSIIKNSMQN 255
+ L ++ + + ++IKNS++N
Sbjct: 483 VVSLTNGVTEHVRQNANVLANLIKNSLRN 511
>gi|343427876|emb|CBQ71402.1| related to RRP6-Exonuclease component of the nuclear exosome
[Sporisorium reilianum SRZ2]
Length = 921
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 202/431 (46%), Gaps = 53/431 (12%)
Query: 1 MQISTRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQ+STR D++VDTL V + L F P K KV+HGA+ D++WLQRD G+YL N+
Sbjct: 366 MQLSTRWGDWIVDTLADEVREHAALLNTSFTHPEKVKVLHGANHDVLWLQRDLGLYLVNL 425
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LLY
Sbjct: 426 FDTYHATNVLLFPSHGLNYLMARYCRFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLY 485
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQ 174
IYD ++ +L + +V++RS DV Y KE S + ++
Sbjct: 486 IYDNLRWELMEA-----GGVAAIRDVFERSKDVAMATYAKEEWDSDGESREGWRSVWRKW 540
Query: 175 G--AGLNAQQLA----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
G A L ++ +V L WRD +AR +DES YVL L+ +A + PT
Sbjct: 541 GGEAALGTEERKDVRDMKREERLVRVLHRWRDGVAREEDESPRYVLGASHLMMLATRAPT 600
Query: 223 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSM------QNAANFEVIAQKLKEERMEVASE 276
+ + + +++ + + ++I + Q A + A LK + +
Sbjct: 601 GREGVLACIPPNATGLKKRVDEIGALIAAEVQAWEQDQAAKKHTLSAALLKHSNDDDEDD 660
Query: 277 ETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPA--YTQLKQEPPKVGSSVAELD 334
+ + DT P+ ++ V A PH A ++ P V +V L
Sbjct: 661 VGQAITRDTPQPTHTPSPAISAISTVAA------PHVDASIWSTTTDTRPSVRGAVRSLA 714
Query: 335 RNGLGSFAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRG 394
+ G + P A ++ + +T S L A PS R + A + A+K G
Sbjct: 715 SSLFGRASTPTSAAVAKPQLSTTTSKL--------FGALSGPSTRAS-AQIDAVKA---G 762
Query: 395 F----GALLGN 401
F GAL+GN
Sbjct: 763 FVDAVGALVGN 773
>gi|402589191|gb|EJW83123.1| 3'-5' exonuclease [Wuchereria bancrofti]
Length = 822
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 131/223 (58%), Gaps = 9/223 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMF
Sbjct: 307 MQISTRQMDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMF 365
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+
Sbjct: 366 DTYKAMRVLNFSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTVAHKTYARSDTHYLLHC 425
Query: 121 YDIMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-L 178
YD ++ +L EN+ L E VY S C +Y+K + Y + L G L
Sbjct: 426 YDQLRKRLLG----QENAANNLLEFVYNESAQTCLNVYKKPTFESDGYEKL--LVGRKPL 479
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
N++Q +A L +WRD AR DDES YVLP +++IA+ LP
Sbjct: 480 NSRQQFALAALWKWRDERARTDDESPQYVLPCHMMLQIAEVLP 522
>gi|326431455|gb|EGD77025.1| hypothetical protein PTSG_07367 [Salpingoeca sp. ATCC 50818]
Length = 848
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 144/252 (57%), Gaps = 10/252 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STRT DF++DTL LR + EV + V+HGAD DI+WLQRD G+Y+ +F
Sbjct: 304 MQVSTRTRDFLIDTLALRGHL-----EVLNECLC--VLHGADSDILWLQRDHGLYIVCLF 356
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
A RVL + SL YLL H ++ +K +Q +DWR+RPLP +M YA+ DTHYLL
Sbjct: 357 VCLFAMRVLGYPKYSLAYLLKHLFHLSLDKRHQLSDWRIRPLPADMCVYAQADTHYLLDA 416
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+D +K +L + + +EN++ L V+ RS D+C Q YE E + +Y Q L
Sbjct: 417 HDALKAEL--LERGNENANL-LRSVFTRSTDICLQRYEVPKYDEEQAMRLYNRQSLALTP 473
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+ LA+ L WRD +AR +DES YV+ + L +A+ PT +++ + + + +
Sbjct: 474 KGLAIFRALHAWRDAVARREDESPRYVMEDHMLFSLARNAPTQPSQVFAICQPTPTLVRM 533
Query: 241 YMGPVLSIIKNS 252
++ I N+
Sbjct: 534 NAHTIIETITNA 545
>gi|255712831|ref|XP_002552698.1| KLTH0C11066p [Lachancea thermotolerans]
gi|238934077|emb|CAR22260.1| KLTH0C11066p [Lachancea thermotolerans CBS 6340]
Length = 735
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 151/270 (55%), Gaps = 21/270 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+++DT+ LR + L EVF DP KV+HGA DI+WLQRD G+Y+ ++F
Sbjct: 256 MQISTREKDWLIDTIALRDDLW-ILNEVFTDPKITKVLHGAFMDIIWLQRDLGLYIVSLF 314
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR+L ++SL YLL + +K+YQ +DWRVRPLP + YAR DTH+LL I
Sbjct: 315 DTYHASRLLGSPKHSLAYLLERYAHFKTSKKYQLSDWRVRPLPKALKAYARADTHFLLNI 374
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL-HIYG------- 172
YD M+ L K L++V S +V ++ +E H++
Sbjct: 375 YDNMRNSLIEQNK--------LSQVLHDSRNVAKRRFEFTTFRPKIVTSHVFSPIEREDP 426
Query: 173 ----LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
+ + + +V L EWRD++AR DDES YV+PN+ L+ +A PTT A +
Sbjct: 427 WRTLMFQYNIPQSKSLLVRRLYEWRDMVARRDDESPRYVIPNQLLVSLAVNAPTTPALIM 486
Query: 229 RLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
+I + + +IK S+++++N
Sbjct: 487 ATSTFVTEHIRQNAKSLALLIKKSLESSSN 516
>gi|189194651|ref|XP_001933664.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979228|gb|EDU45854.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 786
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 129/233 (55%), Gaps = 6/233 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP+ KV+HGA DIVWLQRD G+Y+ +F
Sbjct: 246 MQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAFMDIVWLQRDLGLYIVGLF 305
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L + SL YLL A K+YQ ADWR RPL E+ YAR DTH+LLYI
Sbjct: 306 DTFHAARALGYQAASLAYLLELHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYI 365
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQ 174
+D M+ +L + S + +V + S + + YE + L + +
Sbjct: 366 FDNMRNELVNKSDFSNPEKNKVQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKLISRT 425
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
QQ +V + EWRD + R +DES +++PN + +A+ +P+ L
Sbjct: 426 PVQFTRQQFSVFRAVHEWRDTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGL 478
>gi|425768291|gb|EKV06818.1| Exosome complex exonuclease Rrp6, putative [Penicillium digitatum
Pd1]
gi|425770373|gb|EKV08846.1| Exosome complex exonuclease Rrp6, putative [Penicillium digitatum
PHI26]
Length = 754
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+V+DTL+ + L EVF DP KV+HG+ DI+WLQRD G+Y+ MF
Sbjct: 263 MQISTRGKDWVIDTLQPWREDLQILNEVFADPKILKVLHGSTMDIIWLQRDLGLYVVGMF 322
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A+K YQ ADWR RPLP M YAR DTHYLLYI
Sbjct: 323 DTFHAASALGFPKRSLKFLLSKFVNFEADKRYQTADWRARPLPPAMFDYARSDTHYLLYI 382
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQ 174
YD ++ + + S + + V +RS Q YE+ + + +
Sbjct: 383 YDRLR---NDLIDNSTEEASHIDYVNERSKHEALQRYERPVYDAVNGHGPGGWYDLLWRN 439
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
L +Q AV + +WRD +ARA+DE V P L ++A +P L R L
Sbjct: 440 SGNLPKEQFAVFKAVHQWRDEVARAEDEGWQCVFPKHMLFKLATIMPLDMGSLFRTLSPM 499
Query: 235 HSYIERYMGPVLSIIKNS 252
+ +L +IK +
Sbjct: 500 TPIAKERSHDLLEVIKQA 517
>gi|260950129|ref|XP_002619361.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
gi|238846933|gb|EEQ36397.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
Length = 738
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 162/292 (55%), Gaps = 23/292 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D++VDTL L + L E+F +P KV+HGA+ DI+WLQRD G+Y+ ++F
Sbjct: 260 MQISNREQDWIVDTLALHDDLRD-LNEIFANPAILKVLHGANMDIIWLQRDLGLYIVSLF 318
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L + SL YLL +F +K+YQ ADWR+RPL D M++YAR DTH+LL I
Sbjct: 319 DTYHASKKLGFPKFSLAYLLENFAHFKTSKKYQLADWRIRPLTDAMMQYARADTHFLLNI 378
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE---NSYLHIYGLQGA- 176
YD ++ KL + + + EV S V + +E + ++++H YG G
Sbjct: 379 YDQLRNKLLNAGQ------GKVQEVLYESRKVASRRFEFNSFKQDQTDNWMHSYGGMGQE 432
Query: 177 -------GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL-PTTAAKLR 228
+ +++ +V L WRD +AR DEST Y++ N+ L ++ + P A+K+
Sbjct: 433 RWVMNQYNIEPERIEIVQALINWRDKVAREKDESTRYIMSNQVLANLSSLVAPVDASKVH 492
Query: 229 RLLKSKHSYIERYMGPVLSIIKNSM----QNAANFEVIAQKLKEERMEVASE 276
S++S + + + +I+ + +A N V + L E + ASE
Sbjct: 493 NAAGSQYSIVRQNSKELAELIEKYLATVGHSANNENVTSFDLTEVNYDKASE 544
>gi|226288046|gb|EEH43559.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 826
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 142/261 (54%), Gaps = 19/261 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ +F
Sbjct: 269 MQISTRDQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT S L + SL++LL F A K YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 329 DTYHGSVALNYPKRSLKFLLEKFVNFKAEKIYQMADWRLRPLLPGMFDYARSDTHYLLYI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
YD ++ +S+ + S + + V ++S Q YE+ + + + G G G
Sbjct: 389 YDHIR---NSLVENSTPAHKLVDYVLEKSRQEALQRYERPVYNAET-----GEGGGGWHD 440
Query: 178 --------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
+ +Q AV + +WRD +AR++DE Y+L ++L +IA +P A L R
Sbjct: 441 VLIRNSTLFSREQFAVFRAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLFR 500
Query: 230 LLKSKHSYIERYMGPVLSIIK 250
+ + M ++ +IK
Sbjct: 501 TISPVSPPVRARMSELVQVIK 521
>gi|392579689|gb|EIW72816.1| hypothetical protein TREMEDRAFT_70822 [Tremella mesenterica DSM
1558]
Length = 955
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 154/284 (54%), Gaps = 32/284 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVG-PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QISTR D++VD +KLR ++ L V DP+ KV HG+ DI WLQ+DF I++ +
Sbjct: 332 IQISTRERDYIVDAIKLRSELRRDKLGGVMVDPSIVKVFHGSQSDIPWLQQDFSIFVVGL 391
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+ VL +SL LL +C +A+K YQ ADWR+RPLP+EM YAR DTH+LLY
Sbjct: 392 FDTFHATLVLNFPAHSLASLLKLYCNFDADKRYQLADWRIRPLPEEMEMYARADTHFLLY 451
Query: 120 IYDIMKIKL-----SSMP-----KESENSDT--------------PLTEVYKRSYDVCRQ 155
IYD ++ L S +P KES+ SDT + E +RS
Sbjct: 452 IYDKLRNALLDKSVSLLPTPVGDKESKTSDTAENGTVEEGHLAHSAMKETLERSAQTSLI 511
Query: 156 LYEKELLSENSYLHIYGLQGA-------GLNAQQLAVVAGLCEWRDVIARADDESTGYVL 208
+Y+ E + G + A + + AV L WRD +AR +DES +VL
Sbjct: 512 MYQPNYYDEKTGRGSGGWREACSRWLPSSKDTEAGAVFKALHSWRDSLARNEDESPVWVL 571
Query: 209 PNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
PN L+ ++KQ P+T +++++ + R+ +LS+I ++
Sbjct: 572 PNDKLVALSKQRPSTLFVVQKIIGNYSPLALRHAADILSVIAST 615
>gi|440292006|gb|ELP85248.1| exosome complex exonuclease RRP6, putative [Entamoeba invadens IP1]
Length = 517
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 149/254 (58%), Gaps = 12/254 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR+EDFVVD + LR + L E F +P +KV HG D D+VWL +FG+Y+ N F
Sbjct: 227 MQISTRSEDFVVDVITLRDSIH-LLNEPFTNPKIEKVFHGCDFDMVWLSYNFGLYVVNNF 285
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
D+GQA+R LKL+ SL++LL + GV A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI
Sbjct: 286 DSGQAARCLKLQHFSLKFLLEKYVGVEADKKYQLADWRIRPLTQEMINYARGDTHYLLYI 345
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D+M+ E + L EV +S ++C +L++ + ++ + I + + +
Sbjct: 346 CDLMR-------NECLEQNV-LYEVQAKSNELCLRLFKPTIYNDAAVERI--AKKSWIKK 395
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-IE 239
Q L RD IAR +DES ++ L I ++PT KL+ K Y +E
Sbjct: 396 SQFKAFKKLFLLRDKIAREEDESPHSIMSQSVLNSILSEVPTDFEKLKMACLPKIPYFVE 455
Query: 240 RYMGPVLSIIKNSM 253
+ +++++K M
Sbjct: 456 MHSMEIINLMKEEM 469
>gi|225679037|gb|EEH17321.1| exosome component 10 [Paracoccidioides brasiliensis Pb03]
Length = 827
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 142/261 (54%), Gaps = 19/261 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ +F
Sbjct: 269 MQISTRDQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT S L + SL++LL F A K YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 329 DTYHGSVALNYPKRSLKFLLEKFVNFKAEKIYQMADWRLRPLLPGMFDYARSDTHYLLYI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
YD ++ +S+ + S + + V ++S Q YE+ + + + G G G
Sbjct: 389 YDHIR---NSLVENSTPAHKLVDYVLEKSRQEALQRYERPVYNAET-----GEGGGGWHD 440
Query: 178 --------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
+ +Q AV + +WRD +AR++DE Y+L ++L +IA +P A L R
Sbjct: 441 VLIRNSTLFSREQFAVFRAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLFR 500
Query: 230 LLKSKHSYIERYMGPVLSIIK 250
+ + M ++ +IK
Sbjct: 501 TISPVSPPVRARMSELVQVIK 521
>gi|408396401|gb|EKJ75559.1| hypothetical protein FPSE_04202 [Fusarium pseudograminearum CS3096]
Length = 1034
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 140/259 (54%), Gaps = 7/259 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL+ L +VF +P KV HGA DI+WLQRD G+Y+ +F
Sbjct: 490 MQISTREKDWIVDTLQPWRHKLEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLF 549
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A L SL YLL F +A+K+YQ ADWR+RPLP EML YAR DTHYLLYI
Sbjct: 550 DTFFACGQLNYPAKSLAYLLSKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYI 609
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGL 173
YD ++ +L + +++ + ++S + YE + + +I+
Sbjct: 610 YDRVRNELVAASDKTDADKDLIGRALEKSREQSLSRYEHPDYDQETGEGSRGWSSYIFKN 669
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 233
+++Q +V L +WRD AR +DEST +VL NR + EIA+ P A L LL
Sbjct: 670 SHMAFDSEQFSVFRALWKWRDDTARKEDESTNFVLGNRDISEIARINPPDAKALHSLLPL 729
Query: 234 KHSYIERYMGPVLSIIKNS 252
S + IK S
Sbjct: 730 NASLARSRFNEIWGYIKES 748
>gi|325088958|gb|EGC42268.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H88]
Length = 807
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 142/258 (55%), Gaps = 9/258 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+Y+ +F
Sbjct: 270 MQISTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLF 329
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 330 DTYHAAVALNYPKKSLKFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYI 389
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQ 174
YD ++ + + + S S+ + V +RS Q YE+ + + + + +
Sbjct: 390 YDQIR---NDLIEHSTPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRN 446
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ +Q AV + +WRD IAR++DE YVL ++L +IA +P L R +
Sbjct: 447 STLFSREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPV 506
Query: 235 HSYIERYMGPVLSIIKNS 252
+ ++ +IK +
Sbjct: 507 SPLVRARASELVQVIKQA 524
>gi|225560671|gb|EEH08952.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus G186AR]
Length = 807
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 142/258 (55%), Gaps = 9/258 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+Y+ +F
Sbjct: 270 MQISTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLF 329
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 330 DTYHAAVALNYPKKSLKFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYI 389
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQ 174
YD ++ + + + S S+ + V +RS Q YE+ + + + + +
Sbjct: 390 YDQIR---NDLIEHSTPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRN 446
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ +Q AV + +WRD IAR++DE YVL ++L +IA +P L R +
Sbjct: 447 STLFSREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPV 506
Query: 235 HSYIERYMGPVLSIIKNS 252
+ ++ +IK +
Sbjct: 507 SPLVRARASELVQVIKQA 524
>gi|378728924|gb|EHY55383.1| exosome complex exonuclease Rrp6 [Exophiala dermatitidis
NIH/UT8656]
Length = 820
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 130/226 (57%), Gaps = 3/226 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+++DTLK + L EVF D KV HG++ DI+WLQRD G+Y+ +F
Sbjct: 260 MQISTRDKDWIIDTLKPWRENLQILNEVFADTKILKVFHGSNMDIIWLQRDLGLYVVGLF 319
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A L+ L++LLH F A K+YQ ADWRVRPLP E++ YAR DTH+LL I
Sbjct: 320 DTYHACCALQFPGKGLKHLLHQFANFEAQKQYQTADWRVRPLPRELIDYARSDTHFLLNI 379
Query: 121 YDIMKIKLSSMPKESEN-SDTPLTEVYKRSYDVC-RQLYEKELLSENSYLHIYGLQ-GAG 177
YD ++ L ++N +D LT+ K + R +Y+ E LQ
Sbjct: 380 YDNLRNMLIERSTPNDNLTDFVLTQSKKEALQTYERSVYDMESGRGPLGWLGLLLQRTVR 439
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
+ +Q V + EWRD AR DE YVLPNR L +IA+ +PT+
Sbjct: 440 FDNEQFGVFRAVHEWRDRKARELDEGLQYVLPNRVLWQIAETMPTS 485
>gi|365985620|ref|XP_003669642.1| hypothetical protein NDAI_0D00850 [Naumovozyma dairenensis CBS 421]
gi|343768411|emb|CCD24399.1| hypothetical protein NDAI_0D00850 [Naumovozyma dairenensis CBS 421]
Length = 790
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 145/266 (54%), Gaps = 23/266 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRT+D++VDTLKLR + P L E F +P KV+HGA DI+WLQRD G+Y+ ++F
Sbjct: 275 MQISTRTQDYIVDTLKLRSHLQP-LNEPFTNPQITKVLHGAFMDIIWLQRDLGLYIVSLF 333
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L +NSL YLL F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 334 DTFHASRALGFPKNSLAYLLEKFSNFKTSKKYQMADWRIRPLSKAMNSYARSDTHFLLNI 393
Query: 121 YDIMKIKL------SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
+D M+ KL + + KES N V KR ++ + Y + S Y I +
Sbjct: 394 FDQMRNKLVQDGKLAGVLKESRN-------VAKRRFEYVK--YRPLITSSAVYSPIEKID 444
Query: 175 GAGLNAQQLAV-------VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
Q + + L +WRD IAR DDES Y++PN+ L+ + P A +
Sbjct: 445 PWKTLMYQYNIPLAKELLLKELYQWRDKIARRDDESPRYIMPNQLLVSLVAYAPVEPAGV 504
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSM 253
+ ++ + ++IKN +
Sbjct: 505 VSVSNMVTDHVRSNSKILANLIKNCL 530
>gi|156844457|ref|XP_001645291.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
70294]
gi|156115951|gb|EDO17433.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 746
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 151/268 (56%), Gaps = 23/268 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF+VDTL LR ++ L EVF DP KV+HGA DI+WLQRD G+Y+ ++F
Sbjct: 253 MQISTRKEDFLVDTLALRDELH-ILNEVFADPNILKVLHGAFMDIIWLQRDLGLYVVSLF 311
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L R+SL YLL + +K+YQ ADWRVRPL M YAR DTH+LL I
Sbjct: 312 DTYHASRALGFPRHSLAYLLEKYANFKTSKKYQLADWRVRPLSKPMHAYARADTHFLLNI 371
Query: 121 YD------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG-- 172
YD I + KL+ + ES N V KR ++ R + ++ S + I
Sbjct: 372 YDQIRNQLIRENKLAEVLFESRN-------VAKRRFEYSR--FRPKVPSPAVFTPIEKEE 422
Query: 173 -----LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + + ++ ++ + EWRD+IAR DDES Y++PN+ +I + + P A +
Sbjct: 423 PWRTLVYQYNVPSTKIELLKRIWEWRDMIARRDDESPRYIMPNQLMISLVEYTPIDPAGV 482
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQN 255
+ ++ + ++IK S+++
Sbjct: 483 ISVSNVMTDHVRSNSKVIANLIKKSLED 510
>gi|444314737|ref|XP_004178026.1| hypothetical protein TBLA_0A07170 [Tetrapisispora blattae CBS 6284]
gi|387511065|emb|CCH58507.1| hypothetical protein TBLA_0A07170 [Tetrapisispora blattae CBS 6284]
Length = 771
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 139/242 (57%), Gaps = 31/242 (12%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDT+ LR + L E+F +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 279 MQISTREQDYIVDTISLRDDLI-VLNEIFTNPNITKVFHGASMDIIWLQRDLGLYIVSLF 337
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L L R+SL YLL ++ +K+YQ ADWR RPL + ML YAR DTH+LL I
Sbjct: 338 DTFHASKALGLARHSLAYLLENYASFKTSKKYQLADWRRRPLTNNMLAYARSDTHFLLNI 397
Query: 121 YD------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCR-----------QLYEKELLS 163
+D I + KL+ + ES N V KR ++ + L EKE
Sbjct: 398 FDQLRNTLIKQNKLAGVLHESRN-------VAKRRFEYLKFRPTVPLPNLYTLIEKE-AP 449
Query: 164 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
S L Y +Q ++ +V L EWRD+IAR DDES Y++P + LI + PT
Sbjct: 450 WKSLLIQYNIQD-----EKEILVQKLWEWRDMIARRDDESPRYIMPTQVLISLISYTPTD 504
Query: 224 AA 225
++
Sbjct: 505 SS 506
>gi|367005124|ref|XP_003687294.1| hypothetical protein TPHA_0J00370 [Tetrapisispora phaffii CBS 4417]
gi|357525598|emb|CCE64860.1| hypothetical protein TPHA_0J00370 [Tetrapisispora phaffii CBS 4417]
Length = 743
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 153/276 (55%), Gaps = 33/276 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDT+ LR ++ L VF DP K++HGA DI+WLQRD G+Y+ ++F
Sbjct: 251 MQISTRNTDYLVDTIALRDKLQ-VLNVVFTDPKITKILHGAFMDIIWLQRDLGLYIVSLF 309
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L R+SL YLL F +K+YQ ADWR RPL M YAR DTH+LL I
Sbjct: 310 DTYHASRALGFPRHSLAYLLERFAHFKTSKQYQLADWRTRPLSKAMNAYARADTHFLLNI 369
Query: 121 YD------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE---------- 164
+D I + KL+SM ES +V KR ++ + Y+ L S
Sbjct: 370 FDQLRNMLIQEDKLASMLHESR-------KVAKRRFEYSK--YKPTLPSSAVFSPTESDM 420
Query: 165 --NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
S ++ Y + +Q++ +V L EWRD IAR DDES Y++PN+ + + + +PT
Sbjct: 421 PWRSMIYQYNIP-----SQKVELVKRLWEWRDTIARRDDESPRYIMPNQLIASLVEYVPT 475
Query: 223 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
A + + + + + ++IK+++++ N
Sbjct: 476 NPAGVISVNRMMTDPVRSNAKAIANLIKSTLEDMKN 511
>gi|240280781|gb|EER44285.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H143]
Length = 671
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 142/258 (55%), Gaps = 9/258 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+Y+ +F
Sbjct: 270 MQISTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLF 329
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 330 DTYHAAVALNYPKKSLKFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYI 389
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQ 174
YD ++ + + + S S+ + V +RS Q YE+ + + + + +
Sbjct: 390 YDQIR---NDLIEHSTPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRN 446
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ +Q AV + +WRD IAR++DE YVL ++L +IA +P L R +
Sbjct: 447 STLFSREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPV 506
Query: 235 HSYIERYMGPVLSIIKNS 252
+ ++ +IK +
Sbjct: 507 SPLVRARASELVQVIKQA 524
>gi|389740502|gb|EIM81693.1| hypothetical protein STEHIDRAFT_171972 [Stereum hirsutum FP-91666
SS1]
Length = 910
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 151/303 (49%), Gaps = 56/303 (18%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+R ED++VD +LR ++ L EVF DP K+ HGA+ D+ WLQ+DF +Y+ N+F
Sbjct: 281 MQISSREEDWIVDPFELRDEMED-LNEVFTDPKIVKIFHGAESDVAWLQQDFNLYIVNLF 339
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+VL R+ L LL +C A+K YQ ADWRVRPLP EML YAR DTH+LLYI
Sbjct: 340 DTFHASKVLDFPRHGLASLLEMYCDFTADKRYQLADWRVRPLPQEMLEYARSDTHFLLYI 399
Query: 121 YDIMKIKLSSM-------------------------PKESENSDTP------LTEVYKRS 149
YD ++ L P + + P + EV RS
Sbjct: 400 YDNLRNALLDRFLSRSQSRAQSPQSSSTPPPPSTINPSSTVTALIPPGPDGYVREVLSRS 459
Query: 150 YDVCRQLYEKELLSENSYLHIYGLQGAG------LNAQQLAVVA------------GLCE 191
+ ++YE+E Y + G G G ++A+VA +
Sbjct: 460 AETSLRVYERE------YYDVEGGSGPGGWDTMAKKWNKVALVADGPGGVQREVYRAVHA 513
Query: 192 WRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 251
WRD AR +DES YVL N + ++A++ P A L + S I R +L I+
Sbjct: 514 WRDRTAREEDESVRYVLANHFVFQLAERPPNDMAALLHMFHSVPPVIRRRAKELLDCIRV 573
Query: 252 SMQ 254
+++
Sbjct: 574 ALK 576
>gi|242050364|ref|XP_002462926.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
gi|241926303|gb|EER99447.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
Length = 760
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 135/231 (58%), Gaps = 11/231 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST+ +D+++DT+ L +G LR VF + + K+ HGAD D++WLQRDF IY+ NMF
Sbjct: 54 MQISTQNDDYLIDTIALHDVMG-ILRPVFANSSICKIFHGADNDVLWLQRDFHIYVVNMF 112
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A L + SL YLL +C V +K Q DWR+RPL EM+ YAR D HYLLYI
Sbjct: 113 DTAKACETLSKPQKSLAYLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYI 172
Query: 121 YDIMKIKLSSMPKE-SENSDTPLTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQ 174
+ + +L + + S + E RS VC QLY KE+ S + + LQ
Sbjct: 173 ANCLASELHAKACDTSSDKINFFFEASHRSNMVCMQLYAKEIECPPGASSAASILSRNLQ 232
Query: 175 GAGLNAQQLA----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
GL++++ + +V C WRD++AR DES YVL ++ + +A LP
Sbjct: 233 THGLDSKKSSEVKDLVWKFCAWRDLMARMHDESLRYVLSDQAIAALAVSLP 283
>gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
Length = 1027
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 154/287 (53%), Gaps = 26/287 (9%)
Query: 1 MQISTRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQ+STR D+++DTL V Q L F +P K KV+HGA+ D++WLQRD G+YL N+
Sbjct: 382 MQLSTRWGDWIIDTLSDDVRQHAELLNSSFTNPDKVKVLHGANHDVLWLQRDLGLYLVNL 441
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LL+
Sbjct: 442 FDTYHATNVLMFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLF 501
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQ 174
IYD ++ +L E+ D + +V+ RS V Y KE + + ++
Sbjct: 502 IYDNLRHEL----MEAGGIDA-IRQVFIRSKQVATATYAKEQWDTDGETREGWRTVWRKW 556
Query: 175 G--AGLNAQQLA----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
G A L + +V L WRD +AR +DES Y+L L+ +A + PT
Sbjct: 557 GGEAALGTEHRKEVSQMKKEERLVRALHRWRDTVAREEDESPRYILGANNLMMLAARAPT 616
Query: 223 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEE 269
T + + + +++ + + S+I M A+++ Q ++E
Sbjct: 617 TKQGVLACIPPNATGLKKRIDELASLI---MAEVADWQKDQQARRDE 660
>gi|270007326|gb|EFA03774.1| hypothetical protein TcasGA2_TC013885 [Tribolium castaneum]
Length = 890
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 129/202 (63%), Gaps = 7/202 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST +D+++D L LR ++ L EVF T K+ HGAD+DI WLQRD +Y+ NMF
Sbjct: 297 IQISTEDKDYLIDALALRDKLS-ILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMF 355
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++ L+ SL +L+ FC V NK++Q ADWR+RPLPDE+ YAREDTHYL+YI
Sbjct: 356 DTHQAAKALQYPALSLAFLMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYI 415
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y +MK +L ++ D L V +RS +VC++ Y K +L E+S+L +Y +
Sbjct: 416 YKMMKRELLH---KTNKCDKLLRSVIERSTEVCKKRYFKPILHEDSHLELYRKCKKMFDN 472
Query: 181 QQLAVVAGLCEWRDVIARADDE 202
+Q+ + L E +I +A ++
Sbjct: 473 RQM---SHLLELHQIILKAREQ 491
>gi|154278361|ref|XP_001539994.1| exosome component 3'-5' exonuclease [Ajellomyces capsulatus NAm1]
gi|150413579|gb|EDN08962.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 807
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 141/258 (54%), Gaps = 9/258 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+Y+ +F
Sbjct: 270 MQLSTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLF 329
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYI
Sbjct: 330 DTYHAAVALNYPKKSLKFLLEKFVNFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYI 389
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQ 174
YD ++ + + + S S+ + V +RS Q YE+ + + + + +
Sbjct: 390 YDHIR---NDLIEHSTPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLVRN 446
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ +Q AV + +WRD IAR +DE YVL ++L +IA +P L R +
Sbjct: 447 STLFSREQFAVFRAVHQWRDKIARFEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPV 506
Query: 235 HSYIERYMGPVLSIIKNS 252
+ ++ +IK +
Sbjct: 507 SPLVRARASELVQVIKKA 524
>gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 977
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 143/246 (58%), Gaps = 26/246 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST+ ED+++DT+ L +G L VF +P KV HG D DI+WLQRDF IY+ N+F
Sbjct: 164 VQISTQKEDYLLDTIALHDAMG-ILGAVFANPKICKVFHGGDNDILWLQRDFHIYVVNLF 222
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV+ NK Q DWR RPLP EML+YA D HYLLYI
Sbjct: 223 DTAKACEVLSKPQKSLAYLLETYCGVSTNKLLQREDWRQRPLPAEMLQYALTDAHYLLYI 282
Query: 121 YDIMKIKLSSMPKESENS----DTPL---TEVYKRSYDVCRQLYEKE------------L 161
+ +L K+++NS D L E +RS +C QLY KE L
Sbjct: 283 ASCLIAELKQ--KDNDNSYSYPDVKLKFILEASRRSNMICMQLYTKEVEEFPGDAAASSL 340
Query: 162 LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
S YL+ G G+ ++ + +V LC WR+++AR DE +VL ++ ++ +A ++
Sbjct: 341 FSR--YLNDQG--GSSVSCEIQDLVRRLCTWRELMARVHDEGLRFVLSDQAIVSLANKVS 396
Query: 222 TTAAKL 227
T A ++
Sbjct: 397 TNAMEI 402
>gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio]
Length = 500
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 113/163 (69%), Gaps = 4/163 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR EDF++DTL+LR ++ L E F DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 327 MQISTREEDFIIDTLELRSEMY-ILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 385
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L L RNSL++LL +C V+++K YQ ADWR+RPLPDEML+YA+ DTHYLLY+
Sbjct: 386 DTHHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYV 445
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 163
YD ++ L T + +V+ +S D+ + Y K + +
Sbjct: 446 YDRVRADLFD---GGNGQATLIQQVWTKSRDLSLKKYVKPIFT 485
>gi|365763245|gb|EHN04775.1| Rrp6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 733
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 165/309 (53%), Gaps = 32/309 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNI 372
Query: 121 YD------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI---- 170
YD I KL+ + ES N V KR ++ + Y S Y I
Sbjct: 373 YDQLRNKLIESNKLAGVLYESRN-------VAKRRFEYSK--YRPLTXSSEVYSPIEKES 423
Query: 171 ---YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 424 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDT 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T
Sbjct: 484 VSLTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLET 536
Query: 286 SSNLKIPNV 294
S +I +V
Sbjct: 537 ISVPQIRDV 545
>gi|164655640|ref|XP_001728949.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
gi|159102837|gb|EDP41735.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
Length = 849
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 132/239 (55%), Gaps = 23/239 (9%)
Query: 1 MQISTRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQISTR D++VDTL V + L F P K V+HGAD DI+WLQRD G+Y+ N+
Sbjct: 290 MQISTRWGDWIVDTLVDEVRESAELLNTAFTHPDKVLVLHGADHDILWLQRDLGLYVTNL 349
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT QA+R L+ SL +LL + A+K +Q ADWR+RPLP EML YAR DTH LLY
Sbjct: 350 FDTFQAARALQFGALSLAFLLLRYTNFEADKRFQTADWRIRPLPREMLFYARSDTHALLY 409
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE-----NSYLHIYGLQ 174
+YD ++ +L + EV+ RS ++Y KE E + ++
Sbjct: 410 VYDCLRNELL-----QRGGPLAVKEVFDRSKPTASKVYAKEPWDERGNSRGGWKSLWIRM 464
Query: 175 GAGL-NAQQLA-----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
G L A Q A +V L WRD +AR +DES +V+P R LI++A + P
Sbjct: 465 GGDLARASQDAPPDAPLGREERIVRRLHHWRDQVARKEDESPAFVMPPRVLIQLALRPP 523
>gi|367017047|ref|XP_003683022.1| hypothetical protein TDEL_0G04440 [Torulaspora delbrueckii]
gi|359750685|emb|CCE93811.1| hypothetical protein TDEL_0G04440 [Torulaspora delbrueckii]
Length = 735
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 137/237 (57%), Gaps = 27/237 (11%)
Query: 1 MQISTRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 58
MQISTR D+++DT+ LR +Q+ L EVF +P KV HGA DI+WLQRD G+Y+ +
Sbjct: 252 MQISTRERDYLIDTIALRDDLQI---LNEVFANPKILKVFHGAFMDIIWLQRDLGLYVVS 308
Query: 59 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
+FDT ASR + L R+SL YLL F +K+YQ ADWR+RPL M YAR DTH+LL
Sbjct: 309 LFDTFHASRAIGLPRHSLAYLLEKFANFKTSKKYQLADWRLRPLSKAMNAYARADTHFLL 368
Query: 119 YIYD------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-- 170
IYD I + KL+ + ES N V KR ++ + + S Y I
Sbjct: 369 NIYDQLRNTLIEQNKLAGVLAESRN-------VAKRRFEYSK--FRPIAPSPTVYCPIDK 419
Query: 171 -----YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
+ ++ + +V L +WRD IAR DDES YV+PN+ L+E+A+Q PT
Sbjct: 420 PDPWKVLMFQYSISPNREELVKKLYDWRDTIARRDDESPRYVMPNQLLVELARQAPT 476
>gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13]
Length = 733
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 167/309 (54%), Gaps = 32/309 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSY 167
YD ++ KL K L V S +V ++ +E E+ S + S
Sbjct: 373 YDQLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESP 424
Query: 168 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 425 WKILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVXGV 483
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDT 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T
Sbjct: 484 VSLTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLET 536
Query: 286 SSNLKIPNV 294
S +I +V
Sbjct: 537 ISVPQIRDV 545
>gi|448519311|ref|XP_003868060.1| Rrp6 nuclear exosome exonuclease component [Candida orthopsilosis
Co 90-125]
gi|380352399|emb|CCG22625.1| Rrp6 nuclear exosome exonuclease component [Candida orthopsilosis]
Length = 814
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 188/368 (51%), Gaps = 66/368 (17%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+++DTL LR + L ++F DP KV+HGA DI+WLQRD G+Y+ ++F
Sbjct: 313 MQISNREKDWIIDTLVLRGDLSA-LNKIFTDPKIIKVLHGAFMDIIWLQRDLGLYIVSLF 371
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L + SL+YLL F +K+YQ ADWR+RPLP ML YAR DTH+LLYI
Sbjct: 372 DTYHASRQLGFSKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPKPMLAYARSDTHFLLYI 431
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL---LSEN------------ 165
+D ++ KL K L V S V ++ +E LS N
Sbjct: 432 FDQLRNKLIDSDK--------LARVLFDSRQVAKRRFEYTKFRPLSSNLGSKVSCPVMAA 483
Query: 166 -------SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 218
S ++ Y + A + VV L +WRD+IAR +DES Y++PN+ L+ +A
Sbjct: 484 NPNEPWGSLMYQYNVP-----AFKRPVVEQLYKWRDLIARQEDESVRYIMPNQLLVSLAT 538
Query: 219 -QLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEE 277
+ P A K+ + SY+ + + N+ + A E+I Q LKE SE+
Sbjct: 539 LESPVDAGKVLNV----PSYVSEH------VRLNARELA---ELIDQTLKE------SEQ 579
Query: 278 TEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNG 337
+ ++D +N V + VD ++A+ G QL Q K+ + + L+ N
Sbjct: 580 NDWAIVDKWNNQSTVQVEEQKVD-IEAVNGLL-------DQLLQNSAKLFTEDSLLNNN- 630
Query: 338 LGSFAHPG 345
S A PG
Sbjct: 631 -SSVAIPG 637
>gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a]
gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291]
gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118]
Length = 733
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 167/309 (54%), Gaps = 32/309 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSY 167
YD ++ KL K L V S +V ++ +E E+ S + S
Sbjct: 373 YDQLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESP 424
Query: 168 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 425 WKILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDT 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T
Sbjct: 484 VSLTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLET 536
Query: 286 SSNLKIPNV 294
S +I +V
Sbjct: 537 ISVPQIRDV 545
>gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c]
gi|14195186|sp|Q12149.1|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName:
Full=Ribosomal RNA-processing protein 6
gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae]
gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c]
Length = 733
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 167/309 (54%), Gaps = 32/309 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSY 167
YD ++ KL K L V S +V ++ +E E+ S + S
Sbjct: 373 YDQLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESP 424
Query: 168 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 425 WKILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDT 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T
Sbjct: 484 VSLTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLET 536
Query: 286 SSNLKIPNV 294
S +I +V
Sbjct: 537 ISVPQIRDV 545
>gi|443898900|dbj|GAC76233.1| exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100
[Pseudozyma antarctica T-34]
Length = 917
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 156/297 (52%), Gaps = 25/297 (8%)
Query: 1 MQISTRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQ+STR D+++DTL V Q L F P K KV+HGA+ D++WLQRD G+YL N+
Sbjct: 383 MQLSTRWGDWIIDTLSDEVRQHAELLNSAFTHPDKVKVLHGANHDVLWLQRDLGLYLVNL 442
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LLY
Sbjct: 443 FDTYHATNVLLFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLY 502
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE--------NSYLHIY 171
IYD ++ +L E+ D + +V+ RS +V Y KE S +
Sbjct: 503 IYDNLRHEL----MEAGGVDA-IRDVFVRSKEVAMATYAKEEWDAEGETREGWRSVWRKW 557
Query: 172 GLQGA---------GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
G + A G ++ +V L WRD +AR DES Y+L L+ +A + PT
Sbjct: 558 GGEAALGTEERREVGQMKREERLVRALHRWRDGVAREQDESPRYILGANNLMMLAARAPT 617
Query: 223 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 279
+ + + +++ + +I +Q A + +K +E R+ +A+ T+
Sbjct: 618 KVEGVLACIPPNAAQLKKRAAELAQLIAKEVQ--AWQKDHDEKSEERRIRIAASLTK 672
>gi|349581166|dbj|GAA26324.1| K7_Rrp6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 733
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 163/302 (53%), Gaps = 32/302 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSY 167
YD ++ KL K L V S +V ++ +E E+ S + S
Sbjct: 373 YDQLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESP 424
Query: 168 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 425 WKILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDT 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T
Sbjct: 484 VSLTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLET 536
Query: 286 SS 287
S
Sbjct: 537 IS 538
>gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae]
Length = 733
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 166/314 (52%), Gaps = 42/314 (13%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNI 372
Query: 121 YD------IMKIKLSSMPKESENSD------------TPLTEVYKRSYDVCRQLYEKELL 162
YD I KL+ + ES N TP +EVY EKE
Sbjct: 373 YDQLRNKLIESNKLAGVLYESRNVAKRRFGYSKYRPLTPSSEVYSP--------IEKE-- 422
Query: 163 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
S I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT
Sbjct: 423 ---SPWKILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPT 478
Query: 223 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV-- 280
+ L ++ + + ++I+++++N N EE + S ET+
Sbjct: 479 DVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADG 531
Query: 281 LVLDTSSNLKIPNV 294
++L+T S +I +V
Sbjct: 532 ILLETISVPQIRDV 545
>gi|299473136|emb|CBN78712.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1278
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 140/263 (53%), Gaps = 28/263 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR +D++VD LKLR ++G L VF DP KV HG+D D++WLQRD G+YL NMF
Sbjct: 355 MQLSTREQDYIVDPLKLRGEMGRLL-PVFSDPNIVKVFHGSDSDVLWLQRDLGLYLVNMF 413
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+R L L L +LL FC +K++Q +DWR+RPLP +ML +
Sbjct: 414 DTGQAARQLGLPSFGLAHLLEKFCDFVPDKKHQLSDWRMRPLPADML------------L 461
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D+ E D + V S ++C + +EK E + + QG
Sbjct: 462 IDL----------ERSGGDVAVKAVLDASREICLRRFEKPAFQEKGWSEVLKRQGGNGVL 511
Query: 181 QQLA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 235
V++ L WRD+IARA+DES GYV+ +I +A++ P++ L
Sbjct: 512 DDFGDVPRRVLSALWSWRDMIARAEDESYGYVMSAYVMIRVARKCPSSRDDLEGCGNPLP 571
Query: 236 SYIERYMGPVLSIIKNSMQNAAN 258
++++ +L I++N+ +A
Sbjct: 572 RLVQQHAEDILEIVENAKDESAG 594
>gi|392296333|gb|EIW07435.1| Rrp6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 733
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 32/302 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSY 167
YD ++ KL K L V S +V ++ +E E+ S + S
Sbjct: 373 YDQLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESP 424
Query: 168 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
I Q + ++ +V L +WRD++AR DDES +V+PN+ L + PT +
Sbjct: 425 WKILMYQ-YNIPPEREVLVRELYQWRDLVARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDT 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T
Sbjct: 484 VSLTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLET 536
Query: 286 SS 287
S
Sbjct: 537 IS 538
>gi|353243741|emb|CCA75245.1| related to nucleolar 100K polymyositis-scleroderma protein
[Piriformospora indica DSM 11827]
Length = 847
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 184/376 (48%), Gaps = 56/376 (14%)
Query: 1 MQISTRTEDFVVDTLKLRVQVG-PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQ+S R +D+VVD L ++ L EVF DP KV+HGA+ DIVWLQ +F +Y+ N+
Sbjct: 279 MQVSNRQQDWVVDCLVPEIRANLEILNEVFTDPNIVKVLHGAESDIVWLQENFHLYIVNL 338
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT ASR L+L R+SL +LL +C A+K YQ ADWR+RPLP EML YAR DTH+LL+
Sbjct: 339 FDTFHASRALELPRHSLAFLLSAYCDFTADKRYQLADWRIRPLPAEMLHYARSDTHFLLF 398
Query: 120 IYDIMKIKLSSMPKESENSDTPLTE-----------VYKRSYDVCRQLYEKELLSEN-SY 167
IYD ++ ++ ++ +N TP E +R Q +E + E
Sbjct: 399 IYDQLR---EALLEKGKNPSTPPAEDAPPLSDPQLRYIRRVLSNSAQTSLREFVRERYDA 455
Query: 168 LHIYGLQG-AGL----NAQQLAV-------VAGLCEWRDVIARADDESTGYVLPNRTLIE 215
+ G++G AGL N + L V + WRD +AR +DES +V+ N+ L+
Sbjct: 456 VEGTGMRGWAGLLKKWNRRSLLVPGVERNIFLAVHAWRDRVAREEDESPVFVISNQLLLS 515
Query: 216 IA-KQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS-------MQNAANFEVIAQKLK 267
+ K +P L + G V S+I+ MQ+AA + A K
Sbjct: 516 LMEKPVPVNLTAL----------FASFPGSVPSLIRKRGAELLKVMQDAAVAPIDAAK-- 563
Query: 268 EERMEVASEETEVLVLDTSSN---LKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPP 324
ME E + ++ D ++N +P+ + +VG P P + +
Sbjct: 564 ---MEPMLLEEDAIIFDATANAITTDLPSHTLPPSQSIVPVVGLWEPTKPPI--IAKRST 618
Query: 325 KVGSSVAELDRNGLGS 340
G + + D G G+
Sbjct: 619 LFGGKLGDTDSQGAGA 634
>gi|302306959|ref|NP_983403.2| ACL001Cp [Ashbya gossypii ATCC 10895]
gi|299788769|gb|AAS51227.2| ACL001Cp [Ashbya gossypii ATCC 10895]
Length = 745
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 144/266 (54%), Gaps = 21/266 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+R++D++VDT+ LR + L +F DPT KV HGA D++WLQRD G+Y+ ++F
Sbjct: 254 MQISSRSKDWLVDTIALRDDLH-VLNVIFTDPTVVKVFHGAFMDMIWLQRDLGLYVVSLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L ++SL YLL F +K+YQ ADWRVRPLP + YAR DTH+LL I
Sbjct: 313 DTYHASRALGFPKHSLAYLLETFAKFKTSKKYQLADWRVRPLPKPLRDYARSDTHFLLSI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYG--- 172
YD ++ L K L EV S +V ++ +E + N Y I
Sbjct: 373 YDDLRNALVKAGK--------LAEVLNASRNVAKRRFEYTSFRPRIPDSNVYSPIESTEP 424
Query: 173 ----LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
+ L + ++ L EWRD +AR DDES YV+PN+ L+ + P+ A +
Sbjct: 425 WRKLMYQYNLPPSKEPLLKKLYEWRDTVARRDDESVRYVMPNQLLVSLVSLSPSETAGVL 484
Query: 229 RLLKSKHSYIERYMGPVLSIIKNSMQ 254
+ Y+ + ++IK +++
Sbjct: 485 SVSTYVTDYVRSNARTLANLIKRTLE 510
>gi|254579989|ref|XP_002495980.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
gi|238938871|emb|CAR27047.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
Length = 741
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 105/271 (38%), Positives = 145/271 (53%), Gaps = 23/271 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR D++VDTL LR + L EVF +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 253 MQVSTRQTDYLVDTLALRDDLV-VLNEVFANPLIVKVFHGAFMDIIWLQRDLGLYIVSLF 311
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L R+SL YLL F +K+YQ ADWRVRPL M YAR DTH+LL I
Sbjct: 312 DTYHASRALGFPRHSLAYLLETFASFKTSKKYQLADWRVRPLSKAMSAYARADTHFLLNI 371
Query: 121 YD------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YD I++ KL+ + ES N V KRS+ + Y ++ + + Y +
Sbjct: 372 YDQLRNKLIIENKLAGVLAESRN-------VAKRSFQYSK--YRPKVPNSSVYSPVDRAD 422
Query: 175 GAGLNAQQLAV-------VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
G + Q + V L EWRD IAR DDES YV+PN+ L + P +
Sbjct: 423 GWKVLMNQYNIPLEKEILVKNLYEWRDTIARRDDESPRYVMPNQLLAYLVDYTPLDPTGV 482
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
+ + ++ + ++I S+Q A+
Sbjct: 483 ISVSPTVTDHVRTNAKALANLIVKSLQQIAD 513
>gi|374106609|gb|AEY95518.1| FACL001Cp [Ashbya gossypii FDAG1]
Length = 745
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 144/266 (54%), Gaps = 21/266 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+R++D++VDT+ LR + L +F DPT KV HGA D++WLQRD G+Y+ ++F
Sbjct: 254 MQISSRSKDWLVDTIALRDDLH-VLNVIFTDPTVVKVFHGAFMDMIWLQRDLGLYVVSLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L ++SL YLL F +K+YQ ADWRVRPLP + YAR DTH+LL I
Sbjct: 313 DTYHASRALGFPKHSLAYLLETFAKFKTSKKYQLADWRVRPLPKPLRDYARSDTHFLLSI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYG--- 172
YD ++ L K L EV S +V ++ +E + N Y I
Sbjct: 373 YDDLRNALVKAGK--------LAEVLNASRNVAKRRFEYTSFRPRIPDSNVYSPIESTEP 424
Query: 173 ----LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
+ L + ++ L EWRD +AR DDES YV+PN+ L+ + P+ A +
Sbjct: 425 WRKLMYQYNLPPSKEPLLKKLYEWRDTVARRDDESVRYVMPNQLLVSLVSLSPSETAGVL 484
Query: 229 RLLKSKHSYIERYMGPVLSIIKNSMQ 254
+ Y+ + ++IK +++
Sbjct: 485 SVSTYVTDYVRSNARTLANLIKRTLE 510
>gi|346326755|gb|EGX96351.1| exosome complex exonuclease Rrp [Cordyceps militaris CM01]
Length = 852
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 137/242 (56%), Gaps = 15/242 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL+ L EVF DP+ KV HGA D++WLQRD G+Y+ +F
Sbjct: 263 MQISTRQQDWIVDTLQPWRHKLEVLNEVFADPSIVKVFHGAYMDMIWLQRDLGLYVNGLF 322
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + L SL +LL F +A+K+YQ ADWR+RP+P+EML YAR DTHYLL+I
Sbjct: 323 DTYFACQQLGYSGRSLAFLLSKFADFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLHI 382
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL---------YEKELLSENSYLHIY 171
YD ++ L S S N P ++ R+ + R+L Y +E + + Y
Sbjct: 383 YDQVRNDLVS----SSNRSVPEQDLISRALEKSRELSLSRHVHSGYNEETGEGSRGWYNY 438
Query: 172 GLQGAGL--NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
L+ + L +A Q + + +WRD AR +DES +VL L ++ + P A L
Sbjct: 439 VLKHSHLAYDAAQFTLFKTIWKWRDDTARKEDESPNFVLGTNHLADVCRASPPDAKALHS 498
Query: 230 LL 231
L+
Sbjct: 499 LM 500
>gi|293332135|ref|NP_001169203.1| uncharacterized protein LOC100383056 [Zea mays]
gi|223975495|gb|ACN31935.1| unknown [Zea mays]
Length = 475
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 168/538 (31%), Positives = 256/538 (47%), Gaps = 109/538 (20%)
Query: 142 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 201
L EV KRS ++C QLYEKE L++ SYLHI+GL+ LNA QL+V++ L WRD IARA+D
Sbjct: 16 LLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNATQLSVLSSLYRWRDGIARAED 75
Query: 202 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEV 261
ESTGY+LPN+TL+EIAK++P T+ KL+R++KS++S +ER + V++ I++++ + FE
Sbjct: 76 ESTGYILPNKTLLEIAKEMPVTSGKLKRMIKSRNSILERNLNHVINNIRDAIAASGAFES 135
Query: 262 IAQKLKEERME--------VASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHP 313
I ++LK+ ++E +SE+TE++ N++ P+ V V VG
Sbjct: 136 IVEQLKKGKLEELTLADVKNSSEDTEMIPAVDVDNIEDPSDESAVVPAVITNVGAA---- 191
Query: 314 PAYT--------QLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSG 365
P T L+ PK S A GL ++NK+ LS+
Sbjct: 192 PCITSEASLGNMHLEDPVPKTKDSGASSGFTGL-----------TDNKK------LSNDQ 234
Query: 366 QSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRK-----FDGEKKDKEAMKLEQ 420
Q + +A VQ K+P FGAL G F G + K+++
Sbjct: 235 Q------------QAAKATVQVSKRPT-AFGALFGKAAAGRRPDLFLGFSNVQGKTKVDK 281
Query: 421 IKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVS 480
I SSV LPFH F+ +L + LP S S + I+ S+
Sbjct: 282 ITSSVVLPFHH-FSGGAKL----------SSAALPAKESLHSEPDS---IQHSD------ 321
Query: 481 QSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSL 540
PA + E++I L+ DE++ P E+G+ +D MS
Sbjct: 322 ------PACQ--LEEVIQLDMGTDEQQ-----------PPENGNEDDG-HCETEDTEMSK 361
Query: 541 S---DLSTSFQECFHSANNNRKPGKPERSEEPSGF-LQLKPFDFEAARKQIEFGEDAKEK 596
S D S + Q F S N R + +++ F + + PFD+ ARK + E+
Sbjct: 362 SPSGDPSVTEQR-FRSLNEERNVKQNQKTPREFEFSVPVVPFDYAEARKNLVSSLPKAER 420
Query: 597 SAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKE----LSQGRRRSAFPATGNRSATF 650
+ ++GDK++ S +K G E RRR AFP +GNR+AT+
Sbjct: 421 RKDDAVARAINTDAGDKQRGS-----KKPPGGGENEGNFQHPRRRQAFPPSGNRNATY 473
>gi|428169598|gb|EKX38530.1| hypothetical protein GUITHDRAFT_59898, partial [Guillardia theta
CCMP2712]
Length = 153
Score = 171 bits (433), Expect = 1e-39, Method: Composition-based stats.
Identities = 79/125 (63%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +DF+VDT++LR + L F DP KV HGAD D+ WLQRDFG+Y+ NMF
Sbjct: 30 MQISTREQDFIVDTIELRSCIH-LLLPAFTDPKITKVFHGADSDVRWLQRDFGLYIVNMF 88
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQASRVL+ L YLLH FC A+K+YQ ADWRVRPL EML+YAR DTHYLLYI
Sbjct: 89 DTGQASRVLEFPSYGLAYLLHRFCEEEADKQYQLADWRVRPLTPEMLKYARMDTHYLLYI 148
Query: 121 YDIMK 125
YD ++
Sbjct: 149 YDQLR 153
>gi|366995964|ref|XP_003677745.1| hypothetical protein NCAS_0H00860 [Naumovozyma castellii CBS 4309]
gi|342303615|emb|CCC71396.1| hypothetical protein NCAS_0H00860 [Naumovozyma castellii CBS 4309]
Length = 755
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 155/293 (52%), Gaps = 29/293 (9%)
Query: 1 MQISTRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 58
MQISTR D+++DTL LR +Q+ L VF +P KV HGA DI+WLQRD G+Y+
Sbjct: 257 MQISTRKNDYLIDTLALREDLQI---LNNVFANPMITKVFHGAFMDIIWLQRDLGLYVVG 313
Query: 59 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
+FDT ASR + L ++SL YLL F +K+YQ ADWR+RPL M YAR DTH+LL
Sbjct: 314 LFDTFHASRAMGLPKHSLAYLLEKFAQFKTSKKYQLADWRIRPLSKAMHAYARADTHFLL 373
Query: 119 YIYDIMK------IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-- 170
I+D M+ KL+ + KES N V KR ++ + ++L N ++
Sbjct: 374 NIFDQMRNSLIEQNKLAGVLKESRN-------VAKRRFEYSS--FRPKVLQTNGLVYSPI 424
Query: 171 -------YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
+ + Q+ ++ L +WRD IAR DDES +V+PN+ L+ + P
Sbjct: 425 EKDDPWKTIMFQYNIPPQKEPLLKELYQWRDKIARRDDESPRFVMPNQLLVSLVAYTPID 484
Query: 224 AAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 276
A + + S Y+ + ++IKN + + + + + EE + V E
Sbjct: 485 APGVVSVSNSVTDYVRSNSKILANLIKNCLAKMKDNKFLDNNVAEEGISVVPE 537
>gi|402223082|gb|EJU03147.1| hypothetical protein DACRYDRAFT_50127, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 555
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 127/226 (56%), Gaps = 9/226 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR D+VVDTL LR ++ L EVF D KV HGA DI WLQRDF +Y+ N+F
Sbjct: 305 MQLSTREADWVVDTLALREELE-VLNEVFADSNIVKVFHGATMDINWLQRDFNLYIVNLF 363
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L SL +LL +C A+K +Q ADWR+RPLP EM+ YAR DTH+LLY+
Sbjct: 364 DTYYASKALNFPAFSLAFLLDLYCEFKADKRFQLADWRIRPLPQEMMDYARSDTHFLLYV 423
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQG 175
YD ++ + + K E + +V+ S D Q++E E + ++
Sbjct: 424 YDQVR---NDLLKRVEGGPDLVEKVFDLSKDTALQVWEPERYDPAGNGPGGWQNLTRKWN 480
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+LAV + WRD +AR +DE YVL N + +A+ P
Sbjct: 481 KHFMGSKLAVFKAVYAWRDRVAREEDEGLRYVLTNPQMFALAENCP 526
>gi|354544046|emb|CCE40768.1| hypothetical protein CPAR2_108030 [Candida parapsilosis]
Length = 771
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 174/330 (52%), Gaps = 61/330 (18%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+++DTL LR + L +VF DP KV+HGA DI+WLQRD G+Y+ ++F
Sbjct: 269 MQISNREKDWIIDTLVLRDDLS-VLNKVFTDPKIIKVLHGAFMDIIWLQRDLGLYIVSLF 327
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L + SL+YLL F +K+YQ ADWR+RPLP ML YAR DTH+LLYI
Sbjct: 328 DTYHASRQLGFSKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPKPMLAYARSDTHFLLYI 387
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK---ELLSEN------------ 165
+D ++ KL K L +V S V ++ +E LS N
Sbjct: 388 FDQLRNKLIDSDK--------LAQVLFDSRQVAKRRFEYTKFRPLSNNLGSKVSCPVMAA 439
Query: 166 -------SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 218
S ++ Y + A + VV L +WRD+IAR +DES Y++PN+ L+ +A
Sbjct: 440 NPKEPWGSLMYQYNVP-----AFKRPVVEQLYKWRDLIARKEDESVRYIMPNQLLVSLAT 494
Query: 219 -QLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEE 277
+ P K+ + SY+ + + N+ + A ++I LKE SE+
Sbjct: 495 LESPVDVGKVLNV----PSYVSEH------VRLNARELA---KLIDDTLKE------SEQ 535
Query: 278 TEVLVLDTSSN-LKI----PNVGRESVDGV 302
+ ++D SN L + P V ESV+G+
Sbjct: 536 NDWAIVDKWSNQLTVEAEEPKVDIESVNGL 565
>gi|365758455|gb|EHN00296.1| Rrp6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 734
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 146/270 (54%), Gaps = 25/270 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR D++VDT++LR + L EVF DP KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQVSTRERDYLVDTIELRDALH-ILNEVFTDPLIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRARPLSKPMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS----ENS 166
YD ++ KL K L V S +V ++ +E E+ S EN
Sbjct: 373 YDQLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKHRPRTPSSEVYSPIEKENP 424
Query: 167 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
+ + + + +++ +V L WRD IAR DDES +V+PN+ L + P
Sbjct: 425 WRVL--MYQYNITSEKEELVKDLYLWRDFIARRDDESPRFVMPNQLLAALVAYAPIDVIG 482
Query: 227 LRRLLKSKHSYIERYMGPVLSIIKNSMQNA 256
+ L ++ + + ++I+N+++N
Sbjct: 483 VVSLTNGVTEHVRQNAKVLANLIENALRNV 512
>gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS]
gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS]
gi|449704625|gb|EMD44835.1| exosome complex exonuclease RRP6, putative [Entamoeba histolytica
KU27]
Length = 517
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 145/260 (55%), Gaps = 14/260 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR+ D+++DT+ LR + L + F +P +KV HG D D++WL +FG+Y+ N
Sbjct: 228 LQISTRSSDYIIDTITLRDSIT-LLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCI 286
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
D+GQ +R LKL+ SL+YLL +C V+A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI
Sbjct: 287 DSGQCARALKLQHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYI 346
Query: 121 YDIMKIKLSSMPKESENSDT-PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
D ++ +E D L EV +S ++C +L+ + S++ + + + +
Sbjct: 347 IDQLR---------NECIDAGVLEEVLNKSNELCLRLFRPTVCSDDVIERV--ARRSWIK 395
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-I 238
Q L RD IAR +DES V+ L I +LPT KLR K Y +
Sbjct: 396 KTQFDTFKKLYLLRDKIARIEDESPEAVINMTMLSNIVNELPTDLEKLRLCCLPKVPYFV 455
Query: 239 ERYMGPVLSIIKNSMQNAAN 258
E + + + K Q N
Sbjct: 456 EMHASEFILLTKQEHQIKLN 475
>gi|406699611|gb|EKD02812.1| hypothetical protein A1Q2_02887 [Trichosporon asahii var. asahii
CBS 8904]
Length = 906
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 140/264 (53%), Gaps = 34/264 (12%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPY-LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQISTR D+++DTL LR ++ + L VF DP+ KV HGAD DIVWLQ DF IY+ N+
Sbjct: 357 MQISTREGDWIIDTLALRAELREHKLGHVFADPSVVKVFHGADSDIVWLQEDFDIYIVNL 416
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A++VL+ + SL LL +C +K YQ ADWR+RP+PDEM++YAR DTH+LL+
Sbjct: 417 FDTYHATKVLEFPKFSLASLLQLYCDFEPDKRYQMADWRIRPIPDEMMKYARSDTHFLLF 476
Query: 120 IYDIMKIKL----SSMPKESENSDTP-------LTEVYKRSYDVCRQLYEKELLSENSYL 168
IYD ++ L S P S TP + +V S + +LY+++
Sbjct: 477 IYDNLRNALIARASRTPSPSVEGQTPKPNPQRAMRKVLDLSSETALKLYQRDGYDP---- 532
Query: 169 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
++G G+N G + + D V+ LI+++ P A+ L
Sbjct: 533 ----VKGQGMN--------GWANLSKKLGKKD------VMKEEVLIQLSHLRPNNASVLA 574
Query: 229 RLLKSKHSYIERYMGPVLSIIKNS 252
R L + + + +IKN+
Sbjct: 575 RTLVHQSAEAYARADEIAEVIKNA 598
>gi|403218486|emb|CCK72976.1| hypothetical protein KNAG_0M01230 [Kazachstania naganishii CBS
8797]
Length = 738
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 131/239 (54%), Gaps = 21/239 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDT+ LR ++ L +VF DP KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 255 MQISTRDTDYLVDTIALRDELH-ILNQVFTDPMVTKVFHGAFMDIIWLQRDLGLYIVSLF 313
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L ++SL YLL +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 314 DTFHASKALGFPKHSLAYLLETLANFKTSKKYQLADWRIRPLSKPMSVYARADTHFLLNI 373
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-----ELLSENSYLHIYG--- 172
+D M+ +L D L V S V ++ +E +L + + I
Sbjct: 374 FDQMRNQLIK--------DNKLAGVLGESRKVAKRRFEYSKFRPKLAQPDVFTPIEKESP 425
Query: 173 ----LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + ++ +V L EWRD IAR DDES Y++PN+ LI ++ PT L
Sbjct: 426 WRTLMFQYNVTPEKEELVKALYEWRDTIARRDDESPRYIMPNQLLISLSAYTPTDPVSL 484
>gi|401887667|gb|EJT51646.1| hypothetical protein A1Q1_07058 [Trichosporon asahii var. asahii
CBS 2479]
Length = 906
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 140/264 (53%), Gaps = 34/264 (12%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPY-LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQISTR D+++DTL LR ++ + L VF DP+ KV HGAD DIVWLQ DF IY+ N+
Sbjct: 357 MQISTREGDWIIDTLALRAELREHKLGHVFADPSVVKVFHGADSDIVWLQEDFDIYIVNL 416
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A++VL+ + SL LL +C +K YQ ADWR+RP+PDEM++YAR DTH+LL+
Sbjct: 417 FDTYHATKVLEFPKFSLASLLQLYCDFEPDKRYQMADWRIRPIPDEMMKYARSDTHFLLF 476
Query: 120 IYDIMKIKL----SSMPKESENSDTP-------LTEVYKRSYDVCRQLYEKELLSENSYL 168
IYD ++ L S P S TP + +V S + +LY+++
Sbjct: 477 IYDNLRNALIARASRTPSPSVEGQTPKPNPQRAMRKVLDLSSETALKLYQRDGYDP---- 532
Query: 169 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
++G G+N G + + D V+ LI+++ P A+ L
Sbjct: 533 ----VKGQGMN--------GWANLSKKLGKKD------VMKEEVLIQLSHLRPNNASVLA 574
Query: 229 RLLKSKHSYIERYMGPVLSIIKNS 252
R L + + + +IKN+
Sbjct: 575 RTLVHQSAEAYARADEIAEVIKNA 598
>gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760]
gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar
SAW760]
Length = 517
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 145/260 (55%), Gaps = 14/260 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR+ D+++DT+ LR + L + F +P +KV HG D D++WL +FG+Y+ N
Sbjct: 228 LQISTRSSDYIIDTITLRDSIT-LLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCI 286
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
D+GQ +R LKL+ SL+YLL +C V+A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI
Sbjct: 287 DSGQCARALKLQHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYI 346
Query: 121 YDIMKIKLSSMPKESENSDT-PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
D ++ +E D L EV +S ++C +L+ + S++ + + + +
Sbjct: 347 IDQLR---------NECIDVGILEEVLNKSNELCLRLFRPTVCSDDVIERV--ARRSWIK 395
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-I 238
Q L RD IAR +DES ++ L I +LPT KLR K Y +
Sbjct: 396 KTQFDTFKKLYLLRDKIARIEDESPESIINMTMLSNIVNELPTDLEKLRLCCLPKVPYFV 455
Query: 239 ERYMGPVLSIIKNSMQNAAN 258
E + + + K Q N
Sbjct: 456 EMHASEFILLTKQEHQIKLN 475
>gi|407036010|gb|EKE37956.1| exosome component 10, putative [Entamoeba nuttalli P19]
Length = 517
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 145/260 (55%), Gaps = 14/260 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR+ D+++DT+ LR + L + F +P +KV HG D D++WL +FG+Y+ N
Sbjct: 228 LQISTRSSDYIIDTITLRDSIT-LLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCI 286
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
D+GQ +R LKL+ SL+YLL +C V+A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI
Sbjct: 287 DSGQCARALKLQHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYI 346
Query: 121 YDIMKIKLSSMPKESENSDT-PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
D ++ +E D L EV +S ++C +L+ + S++ + + + +
Sbjct: 347 IDQLR---------NECIDAGVLEEVLNKSNELCLRLFRPTVCSDDVIERV--ARRSWIK 395
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-I 238
Q L RD IAR +DES ++ L I +LPT KLR K Y +
Sbjct: 396 KTQFDTFKKLYLLRDKIARIEDESPESIINMTMLSNIVNELPTDLEKLRLCCLPKVPYFV 455
Query: 239 ERYMGPVLSIIKNSMQNAAN 258
E + + + K Q N
Sbjct: 456 EMHASEFILLTKQEHQIKLN 475
>gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 176
Score = 167 bits (423), Expect = 2e-38, Method: Composition-based stats.
Identities = 75/125 (60%), Positives = 93/125 (74%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR DFVVD L LR V L + F D K KVMHGAD D+ WLQ+DFG+++ +F
Sbjct: 48 MQISTRERDFVVDVLALRSHVRDALGKAFADADKLKVMHGADNDVQWLQKDFGMFVSCLF 107
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTGQA+RVL+L L YLLHH+CG+ ANK +Q ADWR+RPL EM+ YAR DTH+LLY+
Sbjct: 108 DTGQAARVLELPSKGLAYLLHHYCGIKANKRFQLADWRLRPLTKEMVEYARGDTHHLLYV 167
Query: 121 YDIMK 125
+D +K
Sbjct: 168 HDRLK 172
>gi|400601943|gb|EJP69568.1| 3'-5' exonuclease [Beauveria bassiana ARSEF 2860]
Length = 802
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 133/242 (54%), Gaps = 15/242 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL+ L E F DP+ KV HGA D+VWLQRD G+Y+ +F
Sbjct: 263 MQISTRQQDWIVDTLQPWRHKLEILNEAFADPSIIKVFHGAYMDMVWLQRDLGLYVNGLF 322
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A L SL +LL F +A+K+YQ ADWR+RP+P+EML YAR DTHYLL+I
Sbjct: 323 DTFFACEQLGYSGRSLAFLLSKFADFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLHI 382
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL---------YEKELLSENSYLHIY 171
YD ++ L S S N P ++ R+ + L Y++E + Y
Sbjct: 383 YDQVRNDLVS----SSNRSAPEQDLIGRALQKSKDLSLSRHVHAGYQEENGEGPRGWYNY 438
Query: 172 GLQGAGL--NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
L+ + L +A Q + + +WRD AR +DES +VL L +I + P A L
Sbjct: 439 LLKHSHLSYDAAQFTMFKTIWKWRDDTARKEDESPNFVLGTNHLADICRANPPDAKALHS 498
Query: 230 LL 231
L+
Sbjct: 499 LM 500
>gi|68490669|ref|XP_710857.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
gi|46432110|gb|EAK91613.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
Length = 785
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 130/234 (55%), Gaps = 26/234 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 273 MQISNREQDWIIDTLALRDDLT-VLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLF 331
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+I
Sbjct: 332 DTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFI 391
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGAGL 178
YD +K KL K L++V S V ++ +E K N++ +
Sbjct: 392 YDQLKNKLIDAEK--------LSQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVMAF 443
Query: 179 NAQQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
N ++ VV L +WRD++A+ DES Y++PN+ L+ +A
Sbjct: 444 NPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLA 497
>gi|401837803|gb|EJT41675.1| RRP6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 734
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 145/269 (53%), Gaps = 25/269 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQ+STR D++VDT++LR + L EVF DP KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQVSTRERDYLVDTIELRDALH-ILNEVFTDPLIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRARPLSKPMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS----ENS 166
YD ++ KL K L V S +V ++ +E E+ S EN
Sbjct: 373 YDQLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKHRPRTPSSEVYSPIEKENP 424
Query: 167 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
+ + + + +++ +V L WRD IAR DDES +V+PN+ L + P
Sbjct: 425 WRVL--MYQYNITSEKEELVKDLYLWRDFIARRDDESPRFVMPNQLLAALVAYAPIDVIG 482
Query: 227 LRRLLKSKHSYIERYMGPVLSIIKNSMQN 255
+ L ++ + + ++I+N++ N
Sbjct: 483 VVSLTNGVTEHVRQNAKVLANLIENALGN 511
>gi|238879034|gb|EEQ42672.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 786
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 130/234 (55%), Gaps = 26/234 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 273 MQISNREQDWIIDTLALRDDLT-VLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLF 331
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+I
Sbjct: 332 DTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFI 391
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGAGL 178
YD +K KL K L++V S V ++ +E K N++ +
Sbjct: 392 YDQLKNKLIDAEK--------LSQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVMAF 443
Query: 179 NAQQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
N ++ VV L +WRD++A+ DES Y++PN+ L+ +A
Sbjct: 444 NPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLA 497
>gi|50306309|ref|XP_453127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642261|emb|CAH00223.1| KLLA0D01309p [Kluyveromyces lactis]
Length = 744
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 132/236 (55%), Gaps = 25/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R D++VDT+ LR ++ L ++F DP KV+HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQISDREHDWIVDTIALREELY-ILNDIFTDPNVTKVLHGAFMDIIWLQRDLGLYIVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR+L ++SL YLL F +K+YQ ADWR+RPL ML YAR DTH+LL I
Sbjct: 313 DTYHASRMLGFPKHSLAYLLERFANFKTSKKYQLADWRIRPLTKPMLAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE--------------LLSENS 166
+D ++ L K +++V S V ++ +E + +
Sbjct: 373 FDKLRNSLLEQNK--------MSDVLHESRKVAKRRFEYSSFRPKVPSSAVFSPIEKDEP 424
Query: 167 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
+ +I + + A + ++ L EWRD IAR DDES YV+PN+ L+ + PT
Sbjct: 425 WKNI--MFQYNIPASKELLLRRLYEWRDTIARRDDESPRYVMPNQLLVSLVAGAPT 478
>gi|68490644|ref|XP_710869.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
gi|46432124|gb|EAK91626.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
Length = 786
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 130/234 (55%), Gaps = 26/234 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 273 MQISNREQDWIIDTLALRDDLT-VLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLF 331
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+I
Sbjct: 332 DTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFI 391
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGAGL 178
YD +K KL K L++V S V ++ +E K N++ +
Sbjct: 392 YDQLKNKLIDAEK--------LSQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVMAF 443
Query: 179 NAQQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
N ++ VV L +WRD++A+ DES Y++PN+ L+ +A
Sbjct: 444 NPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLA 497
>gi|50286743|ref|XP_445801.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525107|emb|CAG58720.1| unnamed protein product [Candida glabrata]
Length = 737
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 147/267 (55%), Gaps = 23/267 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRT+D++VDT+ LR + L EVF +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 254 MQISTRTQDYIVDTIALRDDLK-MLNEVFTNPLITKVFHGAFMDIIWLQRDLGLYIVSLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L L ++SL YLL + +K+YQ ADWR RPL M+ YAR DTH+LL I
Sbjct: 313 DTFHASKALGLPKHSLAYLLEKYANFKTSKKYQLADWRRRPLSKAMMAYARADTHFLLNI 372
Query: 121 YDIMKI------KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG-- 172
+D M+ KL+ + +ES N V R ++ + Y+ ++ N + +
Sbjct: 373 FDQMRNGLISSGKLAGVLRESRN-------VALRRFEYSK--YKPKIPVANIFTPVEKES 423
Query: 173 -----LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + + ++ L EWRD++AR DDES YV+PN+ L+ + P +
Sbjct: 424 PWRTLMYQYNIPVDKEPLIRELYEWRDMMARRDDESPRYVMPNQLLVSLVAYGPVDPISV 483
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQ 254
+ ++ R + ++IK ++
Sbjct: 484 VSVSSVVTDHVRRNSKTLANLIKKKLE 510
>gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 786
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 126/228 (55%), Gaps = 26/228 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+++DTL LR ++ L EVF +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 273 MQISNRDQDWIIDTLALRDELTE-LNEVFTNPNIVKVFHGAFMDIIWLQRDLGLYIVSLF 331
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L L R SL YLL H+ +K+YQ ADWR+RPL ML YAR DTH+LLYI
Sbjct: 332 DTYHASRALGLSRFSLAYLLEHYAQFKTSKKYQLADWRIRPLSSPMLAYARSDTHFLLYI 391
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-------KELLSENSYLHIYGL 173
YD +K KL K L V S V ++ +E L S+ +
Sbjct: 392 YDQLKNKLIDSDK--------LRGVLHDSRQVAKRRFEYTKFRPLANLFSKQVTCPVMAF 443
Query: 174 ---QGAGLNAQQLAV-------VAGLCEWRDVIARADDESTGYVLPNR 211
+ G Q V V L +WRD +AR +DES +++PN+
Sbjct: 444 NPKEPWGSIVSQYNVPPFKKPLVEVLYKWRDAMARKEDESVRFIMPNQ 491
>gi|363750290|ref|XP_003645362.1| hypothetical protein Ecym_3030 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888996|gb|AET38545.1| Hypothetical protein Ecym_3030 [Eremothecium cymbalariae
DBVPG#7215]
Length = 747
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 139/239 (58%), Gaps = 21/239 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDT+ LR Q L E+F DP+ KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 256 MQISTRESDWLVDTIALR-QDLQVLNEIFTDPSILKVFHGAFMDIIWLQRDLGLYVVSLF 314
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L ++SL YLL F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 315 DTYHASRALGFPKHSLAYLLETFANFKTSKKYQLADWRIRPLSKPMKTYARADTHFLLNI 374
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-----ELLSENSYLHI----- 170
YD ++ +S+ KE + L+ V S +V ++ +E ++LS + I
Sbjct: 375 YDKLR---NSLIKEDK-----LSGVLHASRNVAKRRFEYTSFRPKVLSPTVFSPIEKDDP 426
Query: 171 YGLQGAGLNAQQLA--VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + N + ++ L +WRD++AR DDES YV+PN+ L+ + P+ + L
Sbjct: 427 WRTLMSQYNVPDIKEPLMRKLYKWRDMVARKDDESVRYVMPNQLLVSLVTLAPSDPSGL 485
>gi|358058978|dbj|GAA95376.1| hypothetical protein E5Q_02030 [Mixia osmundae IAM 14324]
Length = 768
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 141/288 (48%), Gaps = 27/288 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVG-PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
MQISTR+ D++VDTL V+ L EVF DP K KVMHGA D++WLQRDFG+Y+ N+
Sbjct: 262 MQISTRSHDWIVDTLVSEVRDRLESLNEVFADPAKVKVMHGAQSDVIWLQRDFGLYIVNL 321
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+ VL + SL LL + +K YQ ADWR+RPLP EM+ YAR DTHYLL
Sbjct: 322 FDTYHATVVLSYGQRSLASLLTKYTHFVPDKRYQLADWRLRPLPQEMIDYARSDTHYLLN 381
Query: 120 IYD-----IMKIKLSSMPKES-ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 173
IYD ++ KL P+ + + S+T L V +RS V Q Y S L G
Sbjct: 382 IYDHLRRALIATKLDPTPEHALDGSETLLQRVDRRSRIVASQAYHGSDYDYESGLGANGW 441
Query: 174 QG--------------------AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
+G + + A WRD +AR DES Y++ + +
Sbjct: 442 RGLVRVMNKGAEYRVNLAKGETSSGRGPEFAAFRAAHSWRDQLARELDESPRYIMSHHLV 501
Query: 214 IEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEV 261
+ PT A + + R + +IK ++ EV
Sbjct: 502 CRLGTVRPTRPADVLACCSVASQTVLRRASELAQVIKAALDTPQATEV 549
>gi|112491261|pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain
gi|112491264|pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn
gi|112491267|pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
gi|112491277|pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
Length = 410
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 147/271 (54%), Gaps = 23/271 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 128 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 186
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M AR DTH+LL I
Sbjct: 187 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNI 246
Query: 121 YD------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI---- 170
YD I KL+ + ES N V KR ++ + Y S Y I
Sbjct: 247 YDQLRNKLIESNKLAGVLYESRN-------VAKRRFEYSK--YRPLTPSSEVYSPIEKES 297
Query: 171 ---YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 298 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 357
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
L ++ + + ++I+++++N N
Sbjct: 358 VSLTNGVTEHVRQNAKLLANLIRDALRNIKN 388
>gi|401413034|ref|XP_003885964.1| Ribonuclease D, related [Neospora caninum Liverpool]
gi|325120384|emb|CBZ55938.1| Ribonuclease D, related [Neospora caninum Liverpool]
Length = 1387
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 152/293 (51%), Gaps = 27/293 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR +D+++D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMF
Sbjct: 501 LQLSTREKDYLIDPFPLFEHLH-VLNAITANPKILKIFHGADSDIIWLQRDFSVYVVNMF 559
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+R L + SL LLH +CGV ANK+YQ ADWR RPL EM YAR DTHYL +
Sbjct: 560 DTCVAARALAVPGGASLANLLHTYCGVEANKQYQLADWRRRPLTPEMEAYARSDTHYLPF 619
Query: 120 IYDIMKIKLSSMPKESENSDTP----------LTEVYK--------RSYDVCRQLY-EKE 160
I+D+MK +L S P+ P +TE + RS DVC +L+ E
Sbjct: 620 IFDVMKNQLLSKPELGGALSPPAVTGLEEGLEVTEAGQQAMQFTLDRSRDVCLKLHVEAP 679
Query: 161 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
+ + AGL+ V L +WRD +AR D S + L+ +A++
Sbjct: 680 FDAPAEAEALLKRNRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKR 739
Query: 221 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM------QNAANFEVIAQKLK 267
PT+ + ++ + ++ ++ +I+ S+ Q AA+ ++ L+
Sbjct: 740 PTSTIEFNAAMRPAPPTLRQHTQELIQLIQRSLLGSEAAQRAASGAFLSPALR 792
>gi|242039749|ref|XP_002467269.1| hypothetical protein SORBIDRAFT_01g022350 [Sorghum bicolor]
gi|241921123|gb|EER94267.1| hypothetical protein SORBIDRAFT_01g022350 [Sorghum bicolor]
Length = 284
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 25/194 (12%)
Query: 101 PLPDEMLRYAREDTHYLLYIY--DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE 158
P ++ YAREDTHYLLYIY D+M+ +L +ES + L EV+KRS ++C Q YE
Sbjct: 2 PFLVDIKMYAREDTHYLLYIYSYDLMRQRLQ---RESTFENDLLLEVHKRSNEICLQFYE 58
Query: 159 KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI-- 216
KELL++ SYLHIYGLQ L+A+QLAVVA L EWRD IAR +DESTGY+LPN+ + +
Sbjct: 59 KELLTDTSYLHIYGLQEHELDAKQLAVVAALHEWRDSIARQEDESTGYILPNKAFLLLWC 118
Query: 217 ------------------AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
AKQ+PT L+R++KSK Y+E + + + N+++ +
Sbjct: 119 KIRYATSLTPPPLFFNSKAKQMPTDVGHLKRIVKSKCPYVESNLELIAYTVWNALKYSYA 178
Query: 259 FEVIAQKLKEERME 272
FE IA++LK+ER+E
Sbjct: 179 FEGIAEQLKKERLE 192
>gi|241948847|ref|XP_002417146.1| exosome component 3'-5' exonuclease [Candida dubliniensis CD36]
gi|223640484|emb|CAX44736.1| exosome complex exonuclease RRP6, putative [Candida dubliniensis
CD36]
Length = 776
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 129/234 (55%), Gaps = 26/234 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+R +D++VDTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 270 MQISSREQDWIVDTLVLRDDLT-VLNEVFADPNIVKVFHGAFMDIIWLQRDLGLYVVSLF 328
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+I
Sbjct: 329 DTYHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFI 388
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGAGL 178
YD +K KL K L +V S V ++ +E K N++ +
Sbjct: 389 YDQLKNKLIDANK--------LAQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVMAF 440
Query: 179 NAQQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
N ++ VV L +WRD++A+ DES Y++PN+ L+ +
Sbjct: 441 NPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKQQDESVRYIMPNQLLVSLV 494
>gi|218199707|gb|EEC82134.1| hypothetical protein OsI_26176 [Oryza sativa Indica Group]
Length = 949
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 124/221 (56%), Gaps = 29/221 (13%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST+ D+++DT+ L V LR VF +P+ K+ HGAD D++WLQRDF IY+ NMF
Sbjct: 186 MQISTQKADYLIDTIALH-DVMSILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMF 244
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV +K Q DWR+RPL EM++YAR D HYLLYI
Sbjct: 245 DTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYI 304
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+ + +L + K + SD+P ++ E S+
Sbjct: 305 ANCLASELHA--KTYDASDSPNDKI--------------NFFFEASH------------R 336
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+ +V +C WRD++AR DES YVL ++ + +A +P
Sbjct: 337 SNMDLVWKICAWRDLMARMHDESLRYVLSDQAIASLAVSVP 377
>gi|342319925|gb|EGU11870.1| Hypothetical Protein RTG_02115 [Rhodotorula glutinis ATCC 204091]
Length = 966
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 135/242 (55%), Gaps = 26/242 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVG-PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+Q+STR +D+++D + V+ L E F +P KV+HGA DIVWLQRDFG+Y+ +
Sbjct: 319 IQLSTRKKDYIIDAIDPGVRENLESLNEFFTNPEWIKVLHGAKSDIVWLQRDFGLYIVGL 378
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+ VL ++SL LL + +K YQ ADWR+RPLP EML+YAR DTHYLL
Sbjct: 379 FDTYHATHVLGYAQHSLASLLDMYTDFEPDKRYQLADWRIRPLPKEMLQYARSDTHYLLS 438
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY---------------------- 157
IYD +++ L + S+ + +P+ +V+ RS V +
Sbjct: 439 IYDHLRLALHAKGAASKETPSPIEDVFNRSIPVSAITFSLPPFDHETGHFESGFLVPLAR 498
Query: 158 EKELLSENSYLHIYGL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 214
+L + ++ L + L G G +L V+ + WR+ +AR +DEST YVL + ++
Sbjct: 499 HGQLKAYSTALAVPTLPIKTGWGPGEAKLEVLREVTRWREKVAREEDESTRYVLSLQGVL 558
Query: 215 EI 216
+I
Sbjct: 559 QI 560
>gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group]
Length = 949
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 124/221 (56%), Gaps = 29/221 (13%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST+ D+++DT+ L V LR VF +P+ K+ HGAD D++WLQRDF IY+ NMF
Sbjct: 186 MQISTQKADYLIDTIALH-DVMSILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMF 244
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV +K Q DWR+RPL EM++YAR D HYLLYI
Sbjct: 245 DTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYI 304
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+ + +L + K + SD+P ++ E S+
Sbjct: 305 ANCLASELHA--KTYDASDSPNDKI--------------NFFFEASH------------R 336
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+ +V +C WRD++AR DES YVL ++ + +A +P
Sbjct: 337 SNMDLVWKICAWRDLMARMHDESLRYVLSDQAIASLAVSVP 377
>gi|428671950|gb|EKX72865.1| 3'-5' exonuclease domain containing protein [Babesia equi]
Length = 742
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 143/254 (56%), Gaps = 13/254 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q S+ ED++VD K+ + L EV DP KV HG+D DI+WLQRDFG+Y+ NMF
Sbjct: 362 VQFSSSKEDWIVDPFKIFGSMN-LLNEVMTDPEILKVFHGSDNDIIWLQRDFGVYVVNMF 420
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ VLK+ + SL+YLL + CGV +K YQ ADWR RPLP EML+YA DTHYL+
Sbjct: 421 DTKAAAEVLKVPGKRSLDYLLMNLCGVRIDKSYQTADWRKRPLPPEMLKYACGDTHYLIK 480
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----KELLSENSYLHIYGLQG 175
+Y I+K ++ E+ + ++ K +C++ Y K + S + YG+
Sbjct: 481 LYTILK----NLALGMEDGREKIIQIMKNGKHICQRQYSEKNPKLIAMARSIGNKYGIPV 536
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 235
LN ++ L +R++ AR DES +L +R + I ++ + +R K+ +
Sbjct: 537 DKLNRISYNLLFNLLVFRNIAARTLDESESLLLSDRNIATIVRR--ANSGSFQRFAKAAY 594
Query: 236 SYIERYMGPVLSII 249
+ +GP ++ I
Sbjct: 595 PCLVN-LGPEIAYI 607
>gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana]
Length = 327
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 101/163 (61%), Gaps = 4/163 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMF
Sbjct: 160 IQISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMF 218
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI
Sbjct: 219 DTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARXDAHYLLYI 278
Query: 121 YDIMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKE 160
D + +L + +S + D L E +RS C QLY KE
Sbjct: 279 ADSLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKE 321
>gi|237835553|ref|XP_002367074.1| exosome component 10, putative [Toxoplasma gondii ME49]
gi|211964738|gb|EEA99933.1| exosome component 10, putative [Toxoplasma gondii ME49]
Length = 1353
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 145/276 (52%), Gaps = 21/276 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR +D+++D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMF
Sbjct: 504 LQLSTREKDYIIDPFALFDHLH-VLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMF 562
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+R L + SL LL +C V ANK+YQ ADWR RPL EM YAR DTHYL +
Sbjct: 563 DTCVAARALAVPGGASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPF 622
Query: 120 IYDIMKIKLSSMP------------------KESENSDTPLTEVYKRSYDVCRQLY-EKE 160
I+D+MK +L S P + +E + +RS DVC +L+ E
Sbjct: 623 IFDVMKNQLLSKPELGAALSPSAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAP 682
Query: 161 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
+ + AGL+ V L +WRD +AR D S + L+ +A++
Sbjct: 683 FDAPAEAEALLKRTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKR 742
Query: 221 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 256
PT+A + ++ + ++M ++ +I+ S+ ++
Sbjct: 743 PTSAVEFAAAMRPAPPTLRQHMPELIQLIQRSLSDS 778
>gi|221506253|gb|EEE31888.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
gondii VEG]
Length = 1353
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 145/276 (52%), Gaps = 21/276 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR +D+++D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMF
Sbjct: 504 LQLSTREKDYIIDPFALFDHLH-VLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMF 562
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+R L + SL LL +C V ANK+YQ ADWR RPL EM YAR DTHYL +
Sbjct: 563 DTCVAARALAVPGGASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPF 622
Query: 120 IYDIMKIKLSSMP------------------KESENSDTPLTEVYKRSYDVCRQLY-EKE 160
I+D+MK +L S P + +E + +RS DVC +L+ E
Sbjct: 623 IFDVMKNQLLSKPELGAALSPSAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAP 682
Query: 161 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
+ + AGL+ V L +WRD +AR D S + L+ +A++
Sbjct: 683 FDAPAEAEALLKRTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKR 742
Query: 221 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 256
PT+A + ++ + ++M ++ +I+ S+ ++
Sbjct: 743 PTSAVEFAAAMRPAPPTLRQHMPELIQLIQRSLSDS 778
>gi|221485391|gb|EEE23672.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
gondii GT1]
Length = 1353
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 145/276 (52%), Gaps = 21/276 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR +D+++D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMF
Sbjct: 504 LQLSTREKDYIIDPFALFDHLH-VLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMF 562
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+R L + SL LL +C V ANK+YQ ADWR RPL EM YAR DTHYL +
Sbjct: 563 DTCVAARALAVPGGASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPF 622
Query: 120 IYDIMKIKLSSMP------------------KESENSDTPLTEVYKRSYDVCRQLY-EKE 160
I+D+MK +L S P + +E + +RS DVC +L+ E
Sbjct: 623 IFDVMKNQLLSKPELGAALSPSAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAP 682
Query: 161 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
+ + AGL+ V L +WRD +AR D S + L+ +A++
Sbjct: 683 FDAPAEAEALLKRTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKR 742
Query: 221 PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 256
PT+A + ++ + ++M ++ +I+ S+ ++
Sbjct: 743 PTSAVEFAAAMRPAPPTLRQHMPELIQLIQRSLSDS 778
>gi|448119348|ref|XP_004203709.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
gi|359384577|emb|CCE78112.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
Length = 756
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 130/234 (55%), Gaps = 25/234 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R D++VDTL LR + L E+F +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 268 MQISNRQNDWLVDTLALRDDLE-VLNEIFTNPQILKVFHGAFMDIIWLQRDLGLYIVSLF 326
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++ L L + SL YLL F +K+YQ ADWR+RPL M YAR DTH+LLYI
Sbjct: 327 DTYHAAKKLGLSKFSLAYLLESFAKFKTSKKYQLADWRLRPLSPAMKAYARSDTHFLLYI 386
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL---LSENSYLHIYG----- 172
YD M+ KL EN D L EV S V ++ +E +S + +Y
Sbjct: 387 YDQMRNKL------LEN-DGKLQEVLYESRQVAKRRFEYTKFRPISSTTTALVYSPLMVS 439
Query: 173 ---------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
+ + A + ++ L EWRD +A+ DES Y++PN+ L+ +A
Sbjct: 440 NPREPYSSIMSQYNVPAFKKPLIEILFEWRDRVAKRQDESVRYIMPNQLLVTLA 493
>gi|414864886|tpg|DAA43443.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 352
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 164/303 (54%), Gaps = 41/303 (13%)
Query: 131 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 190
+ +ES + L EV+KRS ++C Q YEKELL++ SYLHIYGLQ L+A+QLAVVA L
Sbjct: 5 LQRESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDARQLAVVAALH 64
Query: 191 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 250
EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+R++KSK+ Y+E + + +
Sbjct: 65 EWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVESNLELIAYTVW 124
Query: 251 NSMQNAANFEVIAQKLKEERME---VASEET--EVLVLDTSSNLKIPNVGRESVDGVDAL 305
N+++ + FE IA++LK+ER+E + S +T EV LD ++ R + D D
Sbjct: 125 NALEYSYAFEGIAEQLKKERLEQVALKSGQTSDEVTPLDA-------DIDRSNFDSSDQ- 176
Query: 306 VGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSS- 364
+VA R G S A +I E+K T S +S
Sbjct: 177 -------------------SANVNVASGSRAGFMSEAALISSIHLEDKTQTMSSVKTSQT 217
Query: 365 --GQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIK 422
GQ R +N S + + A+Q L + AL GN GE ++ + +E +
Sbjct: 218 LLGQIRPVNK-DVLSNNIHQQAIQDL---SLTLKALKGNLAS--GGESNEQAGINVENFR 271
Query: 423 SSV 425
SSV
Sbjct: 272 SSV 274
>gi|190344443|gb|EDK36119.2| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
6260]
Length = 755
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 131/235 (55%), Gaps = 27/235 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+R +D+++DTLKLR + L E+F +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 266 MQISSREKDWIIDTLKLRDSLV-VLNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLF 324
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L L R SL YLL ++ +K+YQ ADWR+RPL ML YAR DTH+LLY+
Sbjct: 325 DTYHASKKLGLPRFSLAYLLENYANFKTSKKYQLADWRMRPLSGPMLSYARSDTHFLLYV 384
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE---------------LLSEN 165
YD ++ +L S + + EV S V ++ +E +++ N
Sbjct: 385 YDQLRNQLLS------SGSQKMKEVLHESRQVAKRRFEFTRFRPTSVSGSKVSCPIMAPN 438
Query: 166 S---YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
+ Y I + L +V L WRD A+ DES YV+PN+ L+ +
Sbjct: 439 AKEPYSSI--MNQFNLPNHTRPIVEALYLWRDAKAKECDESVRYVMPNQLLVNFS 491
>gi|448116900|ref|XP_004203126.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
gi|359383994|emb|CCE78698.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
Length = 757
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 129/234 (55%), Gaps = 25/234 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R D++VDTL LR + + E+F +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 268 MQISNRQNDWLVDTLALRDDLE-VMNEIFTNPQILKVFHGAFMDIIWLQRDLGLYIVSLF 326
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++ L L + SL YLL F +K+YQ ADWR+RPL M YAR DTH+LLYI
Sbjct: 327 DTYHAAKKLGLSKFSLAYLLETFAKFKTSKKYQLADWRLRPLSPAMKAYARSDTHFLLYI 386
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL---SENSYLHIYG----- 172
YD M+ KL EN D L EV S V ++ +E S + +Y
Sbjct: 387 YDQMRNKLL------EN-DGRLQEVLYESRQVAKRRFEYTKFRPTSGTTTALVYSPLMVS 439
Query: 173 ---------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
+ + A + ++ L EWRD +A+ DES Y++PN+ L+ +A
Sbjct: 440 NPREPYSSIMSQYNVPAFKKPLIEILFEWRDRVAKQQDESVRYIMPNQLLVTLA 493
>gi|344304844|gb|EGW35076.1| hypothetical protein SPAPADRAFT_53425 [Spathaspora passalidarum
NRRL Y-27907]
Length = 756
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 131/237 (55%), Gaps = 34/237 (14%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+++DTL LR + L VF DP+ KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 267 MQISNRDQDWIIDTLALRDDLT-VLNTVFTDPSIVKVFHGAFMDIIWLQRDLGLYIVSLF 325
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L ++SL YLL F +K+YQ ADWR+RPL M+ YAR DTH+LL I
Sbjct: 326 DTYCASKNLGFPKHSLAYLLETFAHFKTSKKYQLADWRIRPLSHPMMAYARSDTHFLLNI 385
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE--------------LLSEN- 165
YD ++ KL K L +V S V ++ +E ++S N
Sbjct: 386 YDQLRNKLIHENK--------LQQVLYDSRQVAKRRFEYTKYRPLAPNGKVSCPVMSSNP 437
Query: 166 -----SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
S ++ Y + + VV L WRD++A+ +DES Y++PN+ L+ +A
Sbjct: 438 REPFASIMYQYNVPSF-----KKGVVEVLYNWRDLVAKQEDESVRYIMPNQLLVTLA 489
>gi|149244804|ref|XP_001526945.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449339|gb|EDK43595.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 826
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 133/233 (57%), Gaps = 23/233 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+V+DTL LR ++ L +F + KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 272 MQISNREKDWVIDTLALRDELSK-LNVIFTNHEIVKVFHGAFMDIIWLQRDLGLYIVSLF 330
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR L + SL+YLL F +K+YQ ADWR+RPLP ML YAR DTH+LLYI
Sbjct: 331 DTYHASRQLGFAKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPAPMLAYARSDTHFLLYI 390
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ----------LYEKELLSEN----- 165
YD ++ KL K S+ L +V KR ++ + +++ N
Sbjct: 391 YDQLRNKLIDQDKLSKVL-FELRQVAKRRFEYTKYRPLSNTPGNGQVSCPIMASNPKEPW 449
Query: 166 -SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
S ++ Y + + +V L ++RD +AR +DES Y++PN+ L+ ++
Sbjct: 450 GSIMYQYNVPSFKKH-----IVEVLYKYRDAVAREEDESVRYIMPNQLLVSLS 497
>gi|146421793|ref|XP_001486840.1| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
6260]
Length = 755
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 131/231 (56%), Gaps = 19/231 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+R +D+++DTLKLR + L E+F +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 266 MQISSREKDWIIDTLKLRDSLV-VLNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLF 324
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L L R SL YLL ++ +K+YQ ADWR+RPL ML YAR DTH+LLY+
Sbjct: 325 DTYHASKKLGLPRFSLAYLLENYANFKTSKKYQLADWRMRPLLGPMLSYARSDTHFLLYV 384
Query: 121 YDIMKIKL-SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-------------ENS 166
YD ++ +L SS ++ + +V KR ++ R + L+S +
Sbjct: 385 YDQLRNQLLSSGSQKMKEVLHESRQVAKRRFEFTR--FRPTLVSGSKVSCPIMAPNAKEP 442
Query: 167 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Y I + L +V L WRD A+ DE YV+PN+ L+ +
Sbjct: 443 YSSI--MNQFNLPNHTRPIVEALYLWRDAKAKECDELVRYVMPNQLLVNFS 491
>gi|21397264|gb|AAM51828.1|AC105730_2 Putative nucleolar protein [Oryza sativa Japonica Group]
gi|22773226|gb|AAN06832.1| Putative nucleolar protein [Oryza sativa Japonica Group]
Length = 523
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 138/213 (64%), Gaps = 13/213 (6%)
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+V KRS ++C QLYEKELL++ SYLHIYGLQ L+A+QLAVV L +WRD IAR DES
Sbjct: 249 QVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVYALHQWRDYIAREVDES 308
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIA 263
TGYVLPN+ LIEIAK++PT A+L+R++KSK+ +++ + V+ II N+ +++ FE A
Sbjct: 309 TGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATESSYAFESRA 368
Query: 264 QKLKEERMEVASEETEVLV---LDTSSNL--KIPNVGRESV-DGVDALVGTTMPHPPAYT 317
++LK+ER+E ++ + + + TS NL +I ++ +E + D + V +
Sbjct: 369 EQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMDKEILSDNIHQQVAQA-----TFQ 423
Query: 318 QLKQEPP--KVGSSVAELDRNGLGSFAHPGEAI 348
+LK+ VG+S + R+ G F++ E +
Sbjct: 424 ELKRPMALGAVGNSTSGGQRDFFGGFSNKSEKM 456
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDFVVDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+F
Sbjct: 186 MQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLF 245
Query: 61 DTGQASR 67
DTGQ +
Sbjct: 246 DTGQVQK 252
>gi|150951537|ref|XP_001387875.2| exosome component 3'-5' exonuclease [Scheffersomyces stipitis CBS
6054]
gi|149388676|gb|EAZ63852.2| ribosomal RNA processing 3'-5' exonuclease [Scheffersomyces
stipitis CBS 6054]
Length = 792
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 25/245 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D+++DTL LR + L VF +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 274 MQISNRDQDWIIDTLALRDDLE-CLNTVFTNPHIVKVFHGAFMDIIWLQRDLGLYIVSLF 332
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L + SL YLL F +K+YQ ADWR+RPL M+ YAR DTH+LL I
Sbjct: 333 DTYHASKSLGFPKFSLAYLLETFAHFKTSKKYQLADWRIRPLSPPMMAYARSDTHFLLSI 392
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK---ELLSENSYLHIYG----- 172
+D +K KL E L V S V ++ +E L+ N +
Sbjct: 393 FDQLKNKLIDAGNEK------LQRVLFDSRQVAKRRFEYTPFRPLTNNINSRVSCPVMAS 446
Query: 173 ---------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-QLPT 222
+ + + + +VV L WRD IA+ +DES +V+PN+ L+ +A P
Sbjct: 447 NPREPFSSIMVQYNVPSHKKSVVEALYNWRDRIAKIEDESVRFVMPNQLLVNLANLNQPV 506
Query: 223 TAAKL 227
AK+
Sbjct: 507 DVAKV 511
>gi|294654453|ref|XP_456510.2| exosome component 3'-5' exonuclease [Debaryomyces hansenii CBS767]
gi|199428893|emb|CAG84465.2| DEHA2A04334p [Debaryomyces hansenii CBS767]
Length = 776
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 159/315 (50%), Gaps = 48/315 (15%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS+R +D+++DTLKLR + L +VF +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 272 MQISSRDQDWIIDTLKLRDDLES-LNKVFTNPDIVKVFHGAFMDIIWLQRDLGLYIVSLF 330
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L + SL YLL F +K+YQ ADWR+RPL ML YAR DTH+LL I
Sbjct: 331 DTYHASKKLGFPKFSLAYLLETFANFKTSKKYQLADWRIRPLSPPMLAYARSDTHFLLNI 390
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
YD ++ KL + L EV S V ++ +E Y L +G
Sbjct: 391 YDQLRNKL------IDAGANRLQEVLYESRQVAKRRFE--------YTKFRPLSTSGGKV 436
Query: 178 ---------------------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + ++ L WRD +A+ DDES Y++ N+ L+ +
Sbjct: 437 SCPVMANNPKEPFSSILLQYNVPYHKKPLIEALYNWRDALAKRDDESVRYIMSNQLLVSL 496
Query: 217 AKQL-PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN--------FEVIAQKLK 267
+ P K+ + Y+ + + ++I+N++++ A+ + I++
Sbjct: 497 SSLSQPVDVQKVLGVSNYISDYVRQNAKDLANLIENTLKSMADSDWELVDKWNDISKAAD 556
Query: 268 EERMEVASEETEVLV 282
++M ++ ++ + ++
Sbjct: 557 NDKMNISDDDLDKII 571
>gi|449016126|dbj|BAM79528.1| similar to polymyositis-scleroderma overlap syndrome associated
autoantigen [Cyanidioschyzon merolae strain 10D]
Length = 492
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 138/257 (53%), Gaps = 26/257 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQV----GPYLREVFKDPTKKKVMHGADRDIVWLQRDF--GI 54
+QIS+ D V+D L LR + G ++R + + P KVMHGAD D++WLQRDF
Sbjct: 153 VQISSVDCDAVIDALALRSALADPSGAFIR-LLRHPRVVKVMHGADSDVLWLQRDFTPAA 211
Query: 55 YLCNMFDTGQASRVLKLERNSLEYLLHHFCG-------------------VNANKEYQNA 95
+ N+FDT +A+++L SL +L+ + + + +Q A
Sbjct: 212 RIVNLFDTARAAQLLGEPSVSLAHLISCYARDEDRTADPASLRNGSRDALASEKRVFQVA 271
Query: 96 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ 155
DWR+RPLP ML YAR+DTHYLLY+Y ++ +L + L +++ +S DV +
Sbjct: 272 DWRIRPLPSSMLHYARQDTHYLLYLYRVLSTRLVQETDPNSPETNRLQQLWLKSADVALR 331
Query: 156 LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 215
Y + ++ +++L + A L+ L ++ L WRD IAR DES YV PN LI
Sbjct: 332 RYALQEVAADAHLKVARQYKAMLSDTMLPLLRDLIHWRDQIAREADESPPYVFPNHFLIA 391
Query: 216 IAKQLPTTAAKLRRLLK 232
+ ++ P + +L +LL+
Sbjct: 392 LVRETPRSPFQLDKLLR 408
>gi|294943277|ref|XP_002783816.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
gi|239896568|gb|EER15612.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
Length = 350
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 137/254 (53%), Gaps = 19/254 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPY-LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI+TR +D++VD L + + + + DP KV+HGAD D+ WLQRD YLCNM
Sbjct: 11 IQIATRKKDYIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQRDLSAYLCNM 70
Query: 60 FDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
FDTGQA+RVL+L SL+ LL +CG A+K Q ADWR RPL + M +YAR+D HYLL
Sbjct: 71 FDTGQAARVLELGGGYSLKNLLDFYCGYKADKANQLADWRQRPLSERMKQYARDDVHYLL 130
Query: 119 YIYDIMKIKLSSMPKESENSDTPLT----EVYK----RSYDVCRQLYEKELLSENSYL-H 169
YIYD M+ +L + D +T ++YK RS DV + Y+ +++ ++ H
Sbjct: 131 YIYDRMRAQL--LCSGGGVDDGKVTAYGRKMYKSTINRSCDVALKTYKD---ADSDFMEH 185
Query: 170 IYGLQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
L L ++A L WRD + R D +L +R + IA P T +
Sbjct: 186 AITLSCKTNTPLSLVGRPMLAALMHWRDKLGRQRDVFPNSILTDRLALRIAMDEPVTREQ 245
Query: 227 LRRLLKSKHSYIER 240
L R L + R
Sbjct: 246 LLRALGGGSGGVAR 259
>gi|344234698|gb|EGV66566.1| hypothetical protein CANTEDRAFT_128954 [Candida tenuis ATCC 10573]
Length = 737
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 125/228 (54%), Gaps = 14/228 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+++DTL LR + L VF +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 252 MQISTRKKDWIIDTLALRDDLQK-LNVVFTNPQIVKVFHGAFMDIIWLQRDLGLYIVSLF 310
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L + SL YLL F +K+YQ ADWR+RPL ML YAR DTH+LL I
Sbjct: 311 DTYHASKKLGFPKFSLAYLLETFAKFKTSKKYQLADWRIRPLSTSMLAYARSDTHFLLNI 370
Query: 121 YDIMKIKL---SSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL-----LSEN---SYLH 169
+D +K KL + +S D+ L + Y R L L +S N +L
Sbjct: 371 FDHLKNKLIDQGNGKMQSVLHDSRLVAKRRFEYTKFRPLKGTSLVTCPVMSSNPLEPFLP 430
Query: 170 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
I + + VV L WRD +AR DES Y++ N+ L +A
Sbjct: 431 IVVQYNIPYHIK--PVVEVLYNWRDNLARQFDESVRYIMSNQALALLA 476
>gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana]
Length = 237
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMF
Sbjct: 96 IQISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMF 154
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI
Sbjct: 155 DTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYI 214
Query: 121 YDIMKIKLSSM 131
D + +L +
Sbjct: 215 ADSLTTELKQL 225
>gi|430811289|emb|CCJ31212.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 767
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 143/270 (52%), Gaps = 50/270 (18%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D+++DTL+LR ++ L EVF DP KV+HGA DI+WLQRDFG+Y+ +F
Sbjct: 251 MQISTRNIDWIIDTLELREELEI-LNEVFTDPNIMKVLHGASMDIIWLQRDFGLYIVGLF 309
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R+L E + + RPLP+EM YAR DTH+LLYI
Sbjct: 310 DTYHATRILGFEGHVI----------------------FRPLPEEMFSYARSDTHFLLYI 347
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD +K + + +S S L V S +V +++EK+ Y + G G++
Sbjct: 348 YDQLK---NELLIKSTLSHNLLLSVLSASNNVALRVFEKDK---------YDVDGLGVDG 395
Query: 181 Q---------------QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
Q++V+ L +WRD +AR +DES YVLPN L++IA P A+
Sbjct: 396 WKNILQKWSNCLTSDLQVSVLISLHQWRDKVARQEDESVRYVLPNHILVQIAVNCPEDAS 455
Query: 226 KLRRLLKSKHSYIERYMGPVLSIIKNSMQN 255
+ + + ++ ++ II+++ Q+
Sbjct: 456 SVLSICSHIPPLVRVHVDEIVQIIRSTKQD 485
>gi|238484333|ref|XP_002373405.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
NRRL3357]
gi|220701455|gb|EED57793.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
NRRL3357]
Length = 434
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D+VVDTLK + L EVF DP+ KV HG+ DI+WLQRD G+Y+ MF
Sbjct: 261 MQISTRDKDWVVDTLKPWREELQMLNEVFADPSILKVFHGSSMDIIWLQRDLGLYVVGMF 320
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+I
Sbjct: 321 DTYHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHI 380
Query: 121 YDIMKIKL 128
+D ++ +L
Sbjct: 381 FDHLRNEL 388
>gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 92/125 (73%), Gaps = 1/125 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS+R +D+++D L + + L EVF +P K+ HG+ D++WLQRDFG+Y+ N+F
Sbjct: 297 VQISSRQKDYILDPLAVWEDMYK-LNEVFANPKIVKIFHGSRNDMLWLQRDFGVYVVNLF 355
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++ L L + SL+YLL H+C + +K +Q ADWR+RP+P MLRYAR+DTHYLLY+
Sbjct: 356 DTFFAAKKLDLAKKSLDYLLQHYCKIRLDKRFQLADWRMRPIPPNMLRYARQDTHYLLYV 415
Query: 121 YDIMK 125
YD ++
Sbjct: 416 YDRLR 420
>gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
domain and an HRDc domain [Cryptosporidium parvum Iowa
II]
gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
domain and an HRDc domain [Cryptosporidium parvum Iowa
II]
Length = 957
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 91/126 (72%), Gaps = 2/126 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT D+++D L ++ L E+ +P KV+HG+D DI+WLQRDF +Y+ NMF
Sbjct: 323 IQLSTRTHDYIIDPFNLFNEIQ-MLNELTANPKILKVLHGSDYDIIWLQRDFSVYIVNMF 381
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DTGQA+R+L SL+ LL +C ++ +K +Q ADWR RPL +E++ YAR DTHYLLY
Sbjct: 382 DTGQAARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWRERPLSNELIEYARGDTHYLLY 441
Query: 120 IYDIMK 125
IYDIMK
Sbjct: 442 IYDIMK 447
>gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386, partial [Cryptosporidium hominis]
Length = 875
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 91/126 (72%), Gaps = 2/126 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT D+++D L ++ L E+ +P KV+HG+D DI+WLQRDF +Y+ NMF
Sbjct: 323 IQLSTRTHDYIIDPFNLFNEIQ-MLNELTANPKILKVLHGSDYDIIWLQRDFSVYIVNMF 381
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DTGQA+R+L SL+ LL +C ++ +K +Q ADWR RPL +E++ YAR DTHYLLY
Sbjct: 382 DTGQAARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWRERPLSNELIEYARGDTHYLLY 441
Query: 120 IYDIMK 125
IYDIMK
Sbjct: 442 IYDIMK 447
>gi|147856691|emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera]
Length = 951
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 129/248 (52%), Gaps = 49/248 (19%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST+ ED++VDT+ L + L+ VF +P+ KV HGAD D++WLQRDF I + N+F
Sbjct: 154 IQISTQNEDYLVDTIALHDTLD-VLQPVFANPSICKVFHGADNDVLWLQRDFHIXVVNLF 212
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A +E DWR RPL EML YA+ D HYLLYI
Sbjct: 213 DT-------------------------AKRE----DWRQRPLSVEMLEYAQTDAHYLLYI 243
Query: 121 YDIMKIKLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENS 166
+ + +L +SENS P + E +RS VC QLY KE+ S
Sbjct: 244 ANCLIAELRQ--HDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSII 301
Query: 167 YLHIYGLQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
H+ G G A L +V LC WRD++AR DES YVL ++ +I +A ++PTT
Sbjct: 302 SRHLNGQGGISSKACDLQFQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTT 361
Query: 224 AAKLRRLL 231
++ L+
Sbjct: 362 QKEICTLI 369
>gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66]
gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66]
Length = 1029
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT D+++D L ++ L E+ +P K+ HG+D DI+WLQRDF +Y+ NMF
Sbjct: 420 IQMSTRTCDYIIDPFPLFEELSR-LNELTTNPRILKLFHGSDYDIIWLQRDFSVYVVNMF 478
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DTGQA+RVL SL LL+ +C V ANK+YQ +DWR RPLP ++ YAR DTHYL Y
Sbjct: 479 DTGQAARVLNTPGGYSLGNLLNLYCSVEANKQYQLSDWRERPLPQHLIEYARSDTHYLPY 538
Query: 120 IYDIMKIKL 128
IYDIMK +L
Sbjct: 539 IYDIMKNQL 547
>gi|195328901|ref|XP_002031150.1| GM25821 [Drosophila sechellia]
gi|194120093|gb|EDW42136.1| GM25821 [Drosophila sechellia]
Length = 532
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 103/163 (63%), Gaps = 4/163 (2%)
Query: 59 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
MFDT +A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+
Sbjct: 1 MFDTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLI 60
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
Y+Y+ M L + + L VY++S DVC++ Y K + S+L +
Sbjct: 61 YVYERMTNDLL----QQQAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSF 116
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+ +QL + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 117 DNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 159
>gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa]
gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa]
Length = 228
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR ED++VDT+ L +G L VF DPT KV HGAD D++WLQRDF IY+ N+F
Sbjct: 93 IQISTRNEDYLVDTIALHDVMGV-LAPVFADPTICKVFHGADNDVLWLQRDFHIYVVNLF 151
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +CGV NK Q DWR RPL EML YA+ D HYLLYI
Sbjct: 152 DTAKACEVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSAEMLEYAQTDAHYLLYI 211
>gi|258566335|ref|XP_002583912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907613|gb|EEP82014.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 635
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 87/137 (63%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR +D++VDTL + L EVF +P KV+HG+ D++WLQRD G+YL +F
Sbjct: 268 MQISTRDKDWIVDTLLPWREELQILNEVFANPQIVKVLHGSSMDVIWLQRDLGLYLVGLF 327
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+ L + SL++LL F A K+YQ ADWRVRPL M YAR DTHYLLYI
Sbjct: 328 DTYHAAAALHYPKKSLKFLLDKFVNFQAEKKYQIADWRVRPLLPGMFDYARSDTHYLLYI 387
Query: 121 YDIMKIKLSSMPKESEN 137
YD ++ +L EN
Sbjct: 388 YDHLRNELIERSTPGEN 404
>gi|242079315|ref|XP_002444426.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor]
gi|241940776|gb|EES13921.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor]
Length = 112
Score = 140 bits (353), Expect = 2e-30, Method: Composition-based stats.
Identities = 69/114 (60%), Positives = 88/114 (77%), Gaps = 3/114 (2%)
Query: 104 DEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 163
++ + YAREDTHYLLYIYD+M+ +L +ES + L EV+KRS ++C Q YEKELL+
Sbjct: 1 NDQVLYAREDTHYLLYIYDLMRQRLQ---RESTFENNLLLEVHKRSNEICLQFYEKELLT 57
Query: 164 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
+ SYLHIYGL+ L+A+QLAVVA L EWRD IAR +DESTGY+LPN+ LIEI
Sbjct: 58 DTSYLHIYGLREHELDAKQLAVVAALHEWRDSIARQEDESTGYILPNKALIEIG 111
>gi|384247627|gb|EIE21113.1| 3'-5' exonuclease, partial [Coccomyxa subellipsoidea C-169]
Length = 165
Score = 137 bits (346), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/128 (49%), Positives = 90/128 (70%), Gaps = 1/128 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST ++++VD L L + L++V +D KV+HG + DI WLQRDF +YL N+F
Sbjct: 39 LQLSTGDKEYLVDALALHDHMH-LLQDVLEDARVVKVLHGGENDISWLQRDFHLYLVNVF 97
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A +VL E SL +LL +CGV ANK+YQ ADWRVRPL E++ YAR D H+L+YI
Sbjct: 98 DTEKACQVLGYEERSLAHLLQRYCGVTANKQYQRADWRVRPLAKELVDYARTDVHFLVYI 157
Query: 121 YDIMKIKL 128
D+++ +L
Sbjct: 158 ADVLRSEL 165
>gi|50508632|dbj|BAD31028.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica
Group]
gi|50509503|dbj|BAD31184.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica
Group]
Length = 1031
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 101/185 (54%), Gaps = 28/185 (15%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
+ HGAD D++WLQRDF IY+ NMFDT +A VL + SL YLL +CGV +K Q D
Sbjct: 303 IFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQRED 362
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
WR+RPL EM++YAR D HYLLYI + + +L + K + SD+P ++
Sbjct: 363 WRLRPLTPEMIQYARCDAHYLLYIANCLASELHA--KTYDASDSPNDKI----------- 409
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E S+ + +V +C WRD++AR DES YVL ++ + +
Sbjct: 410 ---NFFFEASH------------RSNMDLVWKICAWRDLMARMHDESLRYVLSDQAIASL 454
Query: 217 AKQLP 221
A +P
Sbjct: 455 AVSVP 459
>gi|414886884|tpg|DAA62898.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 194
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 10/183 (5%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
LR VF + + K+ HGAD DI+WLQRDF IY+ NMFDT +A +L + SL YLL +C
Sbjct: 4 LRPVFANSSICKIFHGADNDILWLQRDFHIYVVNMFDTAKACEILLKPQKSLAYLLEVYC 63
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE-SENSDTPLT 143
V +K Q DWR+RPL EM+ YAR D HYLLYI + + +L + + S +
Sbjct: 64 EVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKACDTSSDKINFFF 123
Query: 144 EVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQGAGLNAQQLA----VVAGLCEWRD 194
E RS VC QLY KE+ S + + LQ G ++++ + +V C WRD
Sbjct: 124 EASHRSNMVCMQLYSKEIESPPGASSATSILSRNLQTHGFDSKKSSEVKDLVWKFCAWRD 183
Query: 195 VIA 197
++
Sbjct: 184 LMV 186
>gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo]
gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis]
Length = 879
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 142/271 (52%), Gaps = 25/271 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+ +D+V+D + ++ L +V DP KVMHGA+ DI+WLQRDFG+Y+ N+F
Sbjct: 357 VQITGADDDWVIDPFSIFDEMW-RLNDVTTDPRILKVMHGAESDILWLQRDFGVYVVNLF 415
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT +A+ VL L +SL L+ HF G++ +K YQ ADWR+RP+P +ML YA DTHYLL
Sbjct: 416 DTLKAADVLCLSCGHSLSSLVRHFLGIHLDKSYQLADWRIRPIPRDMLTYATADTHYLLD 475
Query: 120 IYDIMK-------IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG 172
+Y +K +K ++P D + + S VC + Y + +E
Sbjct: 476 LYSALKNTALEQDLKY-NIPGMVGCFDNHIWRIMLASKKVCLRQYRDPVFNEIP----RA 530
Query: 173 LQGAGLNAQ--------QLAVVAGLCEWRDVIARADDESTGYVLPNR--TLIEIAKQLPT 222
Q N Q L ++ L +R+ AR DES ++ P+ ++ +A
Sbjct: 531 FQALRKNRQCPSKVDSLSLNMMLNLISFRNYAARVLDESDSFLFPDYAAVIVAMAADSKN 590
Query: 223 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 253
TA R + + +++ + P L ++N++
Sbjct: 591 TAENFYRAMVRRLPLLDQEI-PYLLKLRNTL 620
>gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973195|gb|EED91526.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 181
Score = 134 bits (336), Expect = 2e-28, Method: Composition-based stats.
Identities = 61/120 (50%), Positives = 82/120 (68%)
Query: 9 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 68
DF++D L LR + L + +P KVMHGAD DI WLQRDFG Y+ N+FDTG+ASR
Sbjct: 61 DFLIDALSLRHVIPTCLGPILANPNILKVMHGADSDIPWLQRDFGCYVVNLFDTGRASRA 120
Query: 69 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 128
LK + L +LL + G++ +K +Q +DWR RPLPD+M YA DT YLL IYD ++++L
Sbjct: 121 LKFQSAGLAFLLRKYAGLDPDKAHQLSDWRRRPLPDDMRTYAVADTRYLLDIYDKLRLEL 180
>gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 149
Score = 134 bits (336), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/110 (58%), Positives = 77/110 (70%), Gaps = 8/110 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR DFVVD L LR ++ +L F+D TK+KVMHGAD D+ WLQRDFGIY+ NMF
Sbjct: 40 IQVSTRERDFVVDALALRSKMRAHLARHFEDATKQKVMHGADMDVQWLQRDFGIYVVNMF 99
Query: 61 DTGQASRVLKLERNSL--------EYLLHHFCGVNANKEYQNADWRVRPL 102
DTGQA+RVL+L L Y L HFC V+A+K YQ ADWR RPL
Sbjct: 100 DTGQAARVLELPSKGLGAFYLTDAAYALKHFCDVDADKRYQLADWRRRPL 149
>gi|62088052|dbj|BAD92473.1| exosome component 10 isoform 2 variant [Homo sapiens]
Length = 431
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 1/100 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 328 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 386
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 100
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+R
Sbjct: 387 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIR 426
>gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 311
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Query: 4 STRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG 63
S +F++DT+ L+ + L V +P KV+HGAD DI WLQRDFG+Y+ N+FDT
Sbjct: 184 SPTVHNFLIDTIVLKPYLNEVLLPVLTNPDVVKVLHGADSDIAWLQRDFGLYIVNLFDTM 243
Query: 64 QASRVLKLERNSLEYLLHHFC-GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 122
+A+R LK R S Y+L H+ G++A+K Q ADWRVRPLP+ + +YA +DT YLL IYD
Sbjct: 244 RAARALKFPRASYAYVLQHYVDGLHADKSAQLADWRVRPLPEALQQYAIQDTAYLLDIYD 303
Query: 123 IMKIKLS 129
M+ LS
Sbjct: 304 RMRYDLS 310
>gi|308509326|ref|XP_003116846.1| CRE-CRN-3 protein [Caenorhabditis remanei]
gi|308241760|gb|EFO85712.1| CRE-CRN-3 protein [Caenorhabditis remanei]
Length = 488
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 115/209 (55%), Gaps = 18/209 (8%)
Query: 69 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 128
LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY YD+++ +L
Sbjct: 4 LKYPKFSLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQL 63
Query: 129 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 188
K+ L VY D+C ++Y+K + YL L+ N++Q +
Sbjct: 64 LKQDKKD------LNVVYSECNDLCVRVYKKPVFKPKGYLTDLKLRFT-FNSRQDHALTS 116
Query: 189 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 248
L +WRDV+AR +DES +VLPN L+ +A+QLP + ++++ G +L I
Sbjct: 117 LYKWRDVVARQEDESPQFVLPNHMLLALAEQLPRDVGGIYACCNPLPHFVKKLAGQILKI 176
Query: 249 IKNSMQNAANFEVIAQKLKEERMEVASEE 277
I V A+++K E+++V ++E
Sbjct: 177 I-----------VEAREVKLEKVKVTAKE 194
>gi|294865716|ref|XP_002764472.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
gi|239863939|gb|EEQ97189.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
Length = 703
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 84/121 (69%), Gaps = 4/121 (3%)
Query: 1 MQISTRTEDFVVDTLK--LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 58
+QI+TR +D++VD L + +++ + R + DP KV+HGAD D+ WLQRD YLCN
Sbjct: 584 IQIATRKKDYIVDVLAPGIMMKMHDFNR-ITSDPGIVKVLHGADMDVQWLQRDLSAYLCN 642
Query: 59 MFDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 117
MFDTGQA+RVL+L SL+ LL +CG A+K Q ADWR RPL + M +YAR+D HYL
Sbjct: 643 MFDTGQAARVLELGGGYSLKNLLDFYCGYKADKANQLADWRQRPLSERMKQYARDDVHYL 702
Query: 118 L 118
L
Sbjct: 703 L 703
>gi|403223072|dbj|BAM41203.1| uncharacterized protein TOT_030000466 [Theileria orientalis strain
Shintoku]
Length = 820
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 9/224 (4%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST E+++VD + ++ L V DP KVMHG+D DI WLQRDFG+Y+ NMF
Sbjct: 462 IQLSTPEENYIVDPFDIFTKLN-ILNVVTTDPRILKVMHGSDNDIEWLQRDFGVYIVNMF 520
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA++VL L+ SL L+ + V NK+YQ ADW RPL +EML YA D++YL+ +
Sbjct: 521 DTRQAAKVLNLKEESLMKLIDKYFNVKMNKKYQLADWSKRPLDEEMLNYACSDSNYLIPL 580
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC-RQLYEKELLSENSYLHIY---GLQGA 176
Y MK ++ S + + + V S ++C Q + + ++ I ++
Sbjct: 581 YIKMKNEILS----TSDGKVKMIRVMNYSKNICLTQYVDNGVEMYRKFIRITKKNKIERK 636
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
++ Q + L E+R+ AR D S V+ + L + K+L
Sbjct: 637 SMSFVQYNFMLNLLEFRNYAARKLDVSEQMVIRDYQLGLLVKKL 680
>gi|302803751|ref|XP_002983628.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
gi|300148465|gb|EFJ15124.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
Length = 201
Score = 128 bits (321), Expect = 1e-26, Method: Composition-based stats.
Identities = 60/120 (50%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST D+++D + L ++ LR VF + KV HGAD DI+WLQRDF IY+ N+F
Sbjct: 73 IQISTYKRDYLIDAIALHDEM-EILRPVFANAAICKVFHGADSDILWLQRDFHIYVVNLF 131
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A VL + SL YLL +C ++ NK +Q +DWR RPLP+++L YAR D H+LLYI
Sbjct: 132 DTARACDVLGKPQRSLAYLLQTYCNISTNKAFQKSDWRQRPLPEDILLYARTDAHFLLYI 191
>gi|385304629|gb|EIF48639.1| putative nuclear exosome component rrp6p [Dekkera bruxellensis
AWRI1499]
Length = 607
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 149/316 (47%), Gaps = 63/316 (19%)
Query: 1 MQISTRT-EDFVVDTLKLRVQVGPYL---REVFKDPTKKKVMHGADRDIVWLQRDFGIYL 56
MQIST T +D++VD L Q+ P+L VF +P KV HGA D++WLQRD G+Y+
Sbjct: 236 MQISTDTGKDYIVDPLS--AQLRPHLSLLNIVFTNPDIIKVFHGAFMDMMWLQRDLGLYV 293
Query: 57 CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 116
++FDT A++ L L + SL +LL + +K++Q ADWR+RPL EM YA+ DTH+
Sbjct: 294 VSLFDTYWAAKELTLGKYSLAFLLEKYIHFRTSKKWQLADWRIRPLGPEMRNYAKADTHF 353
Query: 117 LLYIYDIMKIKLSSMPKE--------------------------------SENSDTPLTE 144
L+ ++ ++ +L P S PLT
Sbjct: 354 LIELFGKIQXELIXKPGAMKRVLYHSRKVSNRRFEYATYKPRNATAFGVVSTGGSVPLTP 413
Query: 145 VYKR---SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 201
++ S+D R+L L+ N G+ + VV L +WRD AR +D
Sbjct: 414 EFQDALFSFDTSRELPWLSLMRSN-----------GIPDTKGPVVEALYKWRDNKARKED 462
Query: 202 ESTGYVLPNRTLIEIAKQLP-------TTAAKLRRLLKSKH----SYIERYMGPVLSIIK 250
ES Y++ + L +A T AA L + +S Y+ + + + +I+
Sbjct: 463 ESIRYIMSDFVLTSLANSFSPGAIDQITEAAVLNVINRSARFGSSYYVRKCIKDLTVLIR 522
Query: 251 NSMQNAANFEVIAQKL 266
+ M+ + ++ A +L
Sbjct: 523 DVMKQLSRIDLKAWQL 538
>gi|321465391|gb|EFX76392.1| hypothetical protein DAPPUDRAFT_55156 [Daphnia pulex]
Length = 181
Score = 125 bits (315), Expect = 6e-26, Method: Composition-based stats.
Identities = 57/102 (55%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D++VDTL+L + P L EVF DP K+ GAD D++WLQRDFGIY+ N+F
Sbjct: 81 MQISTDKTDYIVDTLQLWDHLQP-LNEVFCDPKIVKIFQGADSDVIWLQRDFGIYVVNLF 139
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 102
DT QA+ +L E+ SL +LL H+C V+ NK+YQ DWR+RPL
Sbjct: 140 DTFQAATLLGFEKKSLSFLLQHYCQVHVNKKYQLEDWRIRPL 181
>gi|321465548|gb|EFX76549.1| hypothetical protein DAPPUDRAFT_55085 [Daphnia pulex]
Length = 181
Score = 124 bits (312), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/102 (53%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D++VDTL+L + P L EVF DPT K+ GAD D++WLQRDFGIY+ N+F
Sbjct: 81 MQISTEKTDYIVDTLQLWDHLQP-LNEVFCDPTIVKIFQGADSDVIWLQRDFGIYVVNLF 139
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 102
DT QA+ +L ++ L +LL H+C V+ +K+YQ DWR+RPL
Sbjct: 140 DTFQAASLLGFQKKGLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|321452292|gb|EFX63714.1| hypothetical protein DAPPUDRAFT_66837 [Daphnia pulex]
Length = 181
Score = 122 bits (305), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/102 (51%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+++DTLKL + P L +VF DP K+ GAD D++WLQRDFGIY+ N+F
Sbjct: 81 MQISTDKTDYIIDTLKLWDHLQP-LNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLF 139
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 102
DT QA+ +L ++ L +LL H+C V+ +K+YQ DWR+RPL
Sbjct: 140 DTFQAASLLGFQKKGLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|321452793|gb|EFX64106.1| hypothetical protein DAPPUDRAFT_66464 [Daphnia pulex]
Length = 181
Score = 121 bits (304), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/102 (51%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+++DTLKL + P L +VF DP K+ GAD D++WLQRDFGIY+ N+F
Sbjct: 81 MQISTDKTDYIIDTLKLWDHLQP-LNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLF 139
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 102
DT QA+ +L ++ L +LL H+C V+ +K+YQ DWR+RPL
Sbjct: 140 DTFQAASLLGFQKKGLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Ogataea parapolymorpha DL-1]
Length = 729
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 130/251 (51%), Gaps = 35/251 (13%)
Query: 1 MQISTRTE-DFVVDTL--KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 57
MQ++T T+ D+++D L +LR + L +F DP KV HGA DI+WLQRD G+Y+
Sbjct: 260 MQLTTDTKKDYLIDPLSPELRPHLV-NLNVIFTDPNIVKVFHGAFMDIIWLQRDLGLYVV 318
Query: 58 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 117
++FDT ASR L L R+SL +LL + +K++Q ADWR+RPL EM YA+ DTH+L
Sbjct: 319 SLFDTYHASRELGLGRHSLAHLLETYVKFKTSKKWQLADWRMRPLNSEMKNYAKADTHFL 378
Query: 118 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR----------------------- 154
+ ++ M +L P + + +V R Y+
Sbjct: 379 IEVFYKMHSELVQNPDKLKKVLYESRKVSNRRYEYSTFKPRNVKSANGFSSGAEVVATNQ 438
Query: 155 ---QL--YEKELLSENSYLHIYGLQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGY 206
QL ++ L+S ++ ++ A N+ +A ++ L +WRD AR +DES Y
Sbjct: 439 SVPQLPEFKNGLVSVHNPTNLPWSNLADSNSIPMAKRPLLEVLFKWRDEQARREDESPRY 498
Query: 207 VLPNRTLIEIA 217
++ + L+ +
Sbjct: 499 IMSDFMLVSLV 509
>gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva]
Length = 996
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 19/229 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST E++++D K+ ++ L + DP K+MHGA D+VWLQRDF I++ N+F
Sbjct: 513 VQLSTPEENYIIDPFKIFGKMNK-LNRLTTDPKILKIMHGASNDVVWLQRDFNIFVVNLF 571
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A++VL L SL L+ + + NK +Q +DW RPL EML YA D+HYL+ +
Sbjct: 572 DTREAAKVLNLAEQSLAKLIQKYFNIKLNKRFQLSDWSKRPLDAEMLDYACCDSHYLIPL 631
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR--------QLYEK-ELLSENSYLHIY 171
Y +K ++ S E+ + +V + C ++Y+K + +S+ + I
Sbjct: 632 YSALKDEILS----KEDGRVKIIQVMNNGRETCLKQYVDRGPEIYKKFKSISKRHKIRIP 687
Query: 172 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
L N ++ L +R+ +AR D+S ++ + + I K++
Sbjct: 688 ELDFVSYN-----LLLNLIAFRNFLARKLDKSEKLIIRDYQIALIIKRI 731
>gi|270012325|gb|EFA08773.1| hypothetical protein TcasGA2_TC006462 [Tribolium castaneum]
Length = 421
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 134/249 (53%), Gaps = 15/249 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST +D+++D + L+ ++ L EVF +P K+ H A D+ WLQ+D G+++ N+F
Sbjct: 113 VQISTPDKDYIIDAIALKDELHA-LNEVFTNPDIVKIFHSAVNDLKWLQQDLGVFVVNLF 171
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + L ++ L+ LL + V +K Q D+R RPLP + YAR D+HYL+
Sbjct: 172 DTQIAMKALGYKKLGLDALLQDY-HVAKDKTMQRQDFRRRPLPPKFKDYARVDSHYLIGF 230
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y +K +L L V + C+ LY K + + +YL + ++
Sbjct: 231 YHKLKNELIEA--------NLLRAVLDDCNNCCKILYPK--VEDEAYLSVRR-NVEEIHK 279
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QL V+ L WR IA+ D++ G VL + + Q+P+ +A + ++ S+ S+++
Sbjct: 280 RQLLVLEKLNSWRHQIAQYLDKNVGCVLSKSNMETLVLQMPSDSADIMQI--SQSSHVKE 337
Query: 241 YMGPVLSII 249
++ V+ I+
Sbjct: 338 HLDEVMQIL 346
>gi|403371484|gb|EJY85623.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 1077
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 84/134 (62%), Gaps = 9/134 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST ++D+V+D LK + V Y++E+F DP+ K+ HG D DI L D I++ N+F
Sbjct: 876 IQISTYSKDYVIDVLKTKEFVAQYIQEIFVDPSIVKIFHGCDSDIQILASDLDIFVVNLF 935
Query: 61 DTGQASR-VLKLERN--------SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 111
DT +A + + KL N SLE L F G+ +K +Q +DWR+RPLP M+ YAR
Sbjct: 936 DTARAYQAIFKLPENAPKHVDLTSLESLCDKFLGIQLDKFFQVSDWRIRPLPQGMMDYAR 995
Query: 112 EDTHYLLYIYDIMK 125
D+H+L+ +Y I +
Sbjct: 996 SDSHFLIPLYTIFQ 1009
>gi|373433349|emb|CCE67262.1| RRP6 protein, partial [Chironomus tentans]
Length = 133
Score = 117 bits (292), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/101 (51%), Positives = 73/101 (72%), Gaps = 1/101 (0%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRT+D+++DT+ LR ++ L E+F + K+ HG+D DI WLQRD +Y+ NMF
Sbjct: 22 MQISTRTKDYIIDTIALREELH-VLNEIFTRSSIIKIFHGSDCDIEWLQRDLCLYVVNMF 80
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 101
DT QA++ L L R SL +LL H+C + A+K +Q ADWR+RP
Sbjct: 81 DTHQAAKRLGLARLSLAFLLKHYCNIEADKSFQLADWRIRP 121
>gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis]
Length = 680
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST ++D+++D+L LR Q L V +P KV+HG D VWLQRDFG++L N+F
Sbjct: 157 VQLSTGSKDYLIDSLALR-QDMHLLAPVLSNPRICKVIHGGGNDAVWLQRDFGLFLVNVF 215
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEY-QNADWRVRPLPDEMLRYAREDTHYLLY 119
DT +A +VL + SL LL FCG+ A+K Q ADWR RPL E++ YAR D +LL
Sbjct: 216 DTEKACQVLGYHQRSLGALLQRFCGIQADKSLGQRADWRRRPLSAELIDYARRDVQHLLT 275
Query: 120 IYDIMKIKL 128
I D + +L
Sbjct: 276 IADRLGHEL 284
>gi|91088803|ref|XP_968984.1| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 377
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 134/249 (53%), Gaps = 15/249 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST +D+++D + L+ ++ L EVF +P K+ H A D+ WLQ+D G+++ N+F
Sbjct: 113 VQISTPDKDYIIDAIALKDELHA-LNEVFTNPDIVKIFHSAVNDLKWLQQDLGVFVVNLF 171
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + L ++ L+ LL + V +K Q D+R RPLP + YAR D+HYL+
Sbjct: 172 DTQIAMKALGYKKLGLDALLQDY-HVAKDKTMQRQDFRRRPLPPKFKDYARVDSHYLIGF 230
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
Y +K +L L V + C+ LY K + + +YL + ++
Sbjct: 231 YHKLKNELIEA--------NLLRAVLDDCNNCCKILYPK--VEDEAYLSVRR-NVEEIHK 279
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+QL V+ L WR IA+ D++ G VL + + Q+P+ +A + ++ S+ S+++
Sbjct: 280 RQLLVLEKLNSWRHQIAQYLDKNVGCVLSKSNMETLVLQMPSDSADIMQI--SQSSHVKE 337
Query: 241 YMGPVLSII 249
++ V+ I+
Sbjct: 338 HLDEVMQIL 346
>gi|406962736|gb|EKD89001.1| hypothetical protein ACD_34C00239G0001 [uncultured bacterium]
Length = 380
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 130/251 (51%), Gaps = 16/251 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS+ DFV D + L +F++P ++K+ H ++ D++ L+RD+ N+F
Sbjct: 50 IQISSPETDFVFDPFEFSDL--SLLGSLFQNPKQEKIFHASEYDLICLKRDYHFKFINIF 107
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR+L + L LL ++ +N +K+YQ A+W +RPLP EML YAR DT+YL +
Sbjct: 108 DTMIASRILGAPQVGLGSLLQNYFDINLDKKYQRANWGLRPLPPEMLDYARLDTYYLFKL 167
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSY-DVCRQLYEKELLSENSYLHIYGLQGAG-L 178
D + ESE S+ L ++ + + + C+ N H + L G+G
Sbjct: 168 RDRL---------ESELSNHGLLDLAQEDFVNACKAAGHSN--GNNQEAH-WKLAGSGHA 215
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
+ +Q+ ++ LC +RD AR D VL N L+E++ P T +L + +
Sbjct: 216 DPRQVTILKELCTYRDEQARKADLPHFKVLSNDMLVEVSLHRPATLDELSLVPHFSEKLV 275
Query: 239 ERYMGPVLSII 249
+R+ +L +
Sbjct: 276 KRHGSGLLKAV 286
>gi|300121240|emb|CBK21621.2| unnamed protein product [Blastocystis hominis]
Length = 500
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 129/259 (49%), Gaps = 8/259 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+ IS+ D+ +D + L ++F +P+ KVM A ++WLQRDFG+++ N+F
Sbjct: 233 IMISSGEIDYAIDAIATHNSCWK-LNDLFTNPSIVKVMFNAGDQLLWLQRDFGVFMVNLF 291
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
D A ++L ++ S +L + N ++ ADWR RPL MLR+AR+ H LY+
Sbjct: 292 DVQMALKLLDEKQTSFSDVLMNRMNEYINMRFRRADWRTRPLTAGMLRFARQTAHSTLYL 351
Query: 121 YDIMKIKLSSMPKESEN-------SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 173
++ +L + ++ N D + E ++C + Y K + + +
Sbjct: 352 SSMVIEQLQNESEKHINRVGDGRVGDGQIVETLAACNELCLETYHKPVQTYETGESTIAE 411
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 233
G Q + L WRDV+AR DES YVLP L+++A +P T +LRRLL
Sbjct: 412 LGQIFQPVQKMLFLSLYYWRDVVARELDESVQYVLPLLPLLKVAHAVPKTKEELRRLLSP 471
Query: 234 KHSYIERYMGPVLSIIKNS 252
+ E+ + + SI+++
Sbjct: 472 LSATAEQRLDRLFSIVESC 490
>gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
Length = 382
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 129/254 (50%), Gaps = 16/254 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTRTE +++D L L+ + P L + VMHGAD DI L RD GI + N+F
Sbjct: 52 IQISTRTESWLIDPLALK-DLSP-LAAPLGNRDILIVMHGADYDIRSLHRDHGIEVTNLF 109
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR+L + L LL G+ NK+YQ ADW RPL EM YA DT LL +
Sbjct: 110 DTMIASRLLGITEFGLAALLKARFGIELNKKYQKADWSKRPLSPEMRAYAVADTADLLRL 169
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LN 179
YD+++ +L E E + CR + + +SE +GAG L
Sbjct: 170 YDMLRDEL------LEKGRLAWLE------EECRLVCQAR-VSEKEGPLFLACKGAGKLR 216
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+ LAV+ L + RD AR D V+ TL+EIA++ P + A+L + I+
Sbjct: 217 GRALAVLEELLQLRDSQARELDRPPFKVISGDTLLEIAEKKPRSLAELSFIKGMTPGQIQ 276
Query: 240 RYMGPVLSIIKNSM 253
R VLS + +++
Sbjct: 277 RLGERVLSAVADAL 290
>gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 964
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 85/133 (63%), Gaps = 3/133 (2%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYL-REVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QIST DF++D + LR Q+ L + +F + TK K++HG + DI WL+ DF I + N+
Sbjct: 796 IQISTVNMDFMIDAMALRNQINQLLNKSLFLNKTKIKILHGCENDIKWLKNDFDIDIVNL 855
Query: 60 FDTGQASRVLKLERNS--LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 117
FDT A ++K ++ S L+ L + GV +K YQ +DWR+RPLP M+ YAR D+ L
Sbjct: 856 FDTMFAEMIIKNKQQSYSLKNLSQDYLGVELDKSYQISDWRIRPLPTPMMNYARVDSFIL 915
Query: 118 LYIYDIMKIKLSS 130
L ++ IMK L+S
Sbjct: 916 LRLFPIMKQMLTS 928
>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
Length = 380
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 120/242 (49%), Gaps = 14/242 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q S D++VD L G L E+F +P +KV H A+ DI+ L+RDFG ++F
Sbjct: 50 IQFSVPGADYLVDPLASVNLSG--LNEIFSNPGIEKVFHAAEYDILCLKRDFGFTFTHLF 107
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R+L L LL GV +K YQ A+W RPLP ML YAR DTHYL+ +
Sbjct: 108 DTMIAARILGRSEVGLAALLEEHFGVTLDKRYQRANWARRPLPPAMLNYARLDTHYLIDL 167
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LN 179
+ + +L +E T L E D R +E+ + + G L
Sbjct: 168 RNHLAKEL------AERGLTALAE-----EDFLRVCETPAAPAESRPPMWWDVAGTTDLP 216
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
QQ +++ L E+R+ AR + VL N LI+IA+ P T L + ++++E
Sbjct: 217 PQQASLLQALVEFREQQARFANLPPFRVLSNAVLIQIAEANPMTLEDLAEVQGLSYAHLE 276
Query: 240 RY 241
RY
Sbjct: 277 RY 278
>gi|85000709|ref|XP_955073.1| 3'-5' exonuclease [Theileria annulata strain Ankara]
gi|65303219|emb|CAI75597.1| 3'-5' exonuclease, putative [Theileria annulata]
Length = 790
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 125/238 (52%), Gaps = 28/238 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST E++++D K+ ++ L + DP K+MHGA D++WLQRDF I++ N+F
Sbjct: 518 LQLSTPQENYIIDPFKIFGKMNK-LNRLTTDPKILKIMHGACNDVIWLQRDFNIFVVNLF 576
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWR---------VRPLPDEMLRYAR 111
DT +A+ VL L SL L+ + + NK +Q ++W +RPL DEML YA
Sbjct: 577 DTREAAIVLNLPEQSLAKLVQKYFNIKLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYAC 636
Query: 112 EDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR--------QLYEK-ELL 162
D+HYL+ +Y+ +K ++ S E+ + +V + C ++Y+K + +
Sbjct: 637 CDSHYLIPLYNTLKDEILS----KEDGRVKIIQVMNNGRETCLKQYVDRGPEIYKKFKSI 692
Query: 163 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
S+ + I L N ++ + +R+ +AR D+S ++ + + + K++
Sbjct: 693 SKRHKIKIPELDFVSYN-----LLLNIIAFRNFLARKLDKSEKLIIRDYQIALLIKRM 745
>gi|321451818|gb|EFX63353.1| hypothetical protein DAPPUDRAFT_35911 [Daphnia pulex]
Length = 143
Score = 107 bits (267), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIST D+++DTLKL + P L +VF DP K+ GAD D++WLQRDFGIY+ N+F
Sbjct: 51 MQISTEKTDYIIDTLKLWDHLQP-LNKVFGDPNIVKIFQGADSDVIWLQRDFGIYIVNLF 109
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
T QA+ +L E+ L +LL H+C V+ NK+YQ
Sbjct: 110 YTLQAASLLGFEKKGLPFLLQHYCQVHVNKKYQ 142
>gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.]
Length = 382
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 15/250 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T+ FV+DT+KL+ L+ +F D K+ HGAD D+ L RDF I + N+F
Sbjct: 50 LQVATKNCIFVIDTIKLKEL--SLLKPIFADNEITKIFHGADYDVRSLFRDFNIEINNLF 107
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
D+ ASR L ++ LE ++ H V K++ DW RPL D+ML YA +D YL+ +
Sbjct: 108 DSELASRFLGVKETGLEAVIRHRFNVYLEKKFTKRDWSKRPLIDDMLHYAADDVRYLVPL 167
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LN 179
Y+I+ E E +D K D+ + E +L +GAG L
Sbjct: 168 YEIL---------EKELNDIGRLFWVKEECDILCSVRPDANNGEPLFLK---FKGAGKLK 215
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+ LAV+ L +R IA D ++ N L+++A+ P + K+ ++
Sbjct: 216 PENLAVLEALLGFRKEIALKKDVPFFKIIGNAALLKLAETRPDSLNKIINTNVLSKRQMD 275
Query: 240 RYMGPVLSII 249
Y +LSII
Sbjct: 276 MYGKDLLSII 285
>gi|404491882|ref|YP_006715988.1| ribonuclease D [Pelobacter carbinolicus DSM 2380]
gi|77544021|gb|ABA87583.1| ribonuclease D, putative [Pelobacter carbinolicus DSM 2380]
Length = 375
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 16/224 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIST T +VD L V+ L V DPT +K+ H AD DI L RDF I + +F
Sbjct: 45 LQISTSTRTVLVDPLA--VEDLAALAPVLADPTIRKIFHAADYDIRCLFRDFRIEVQGLF 102
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A ++L +R L +L + V +K YQ ADW RPL + M+ YA EDT +L +
Sbjct: 103 DTMIACQMLGEKRVGLADVLAKYLDVELDKRYQRADWSKRPLEEGMILYAMEDTCHLHRL 162
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LN 179
+I++ +L M + S + L +K SEN+ ++GAG L
Sbjct: 163 TEILEGRLRDMGRLSWAEEE-------------FALLQKVRHSENNGPLFMRVKGAGLLE 209
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
+QLAV+ L +WRD A D V+ N+TL+ +A+ +P +
Sbjct: 210 RKQLAVLEQLLQWRDEEACRRDRPAFKVVGNKTLLGLAQIMPGS 253
>gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
Length = 294
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 14/255 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STRT+DFVVD + V V P L E+ D ++ V+HGAD D+ L R++G + +F
Sbjct: 54 LQLSTRTQDFVVDPIS--VDVRP-LGEILCD-GREVVLHGADYDVRCLHREYGWRIPRLF 109
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L L L+ GV +K +Q +DW RPL + L YA DTH+LL +
Sbjct: 110 DTMIAARRLGRPGLGLSALVESHFGVRLSKAFQRSDWGRRPLTPDQLAYAALDTHFLLPL 169
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+D++ +L+ + L E +K S + + + + + + G + L+A
Sbjct: 170 FDLLTGELA--------ARGALDEAWKESQRIASVVARERVFDPEGWRRVKGAR--ELDA 219
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
AV+ L R+ ARA D VL ++EIA++ P T L + S + R
Sbjct: 220 PGKAVLRALWIAREERARASDRPPFKVLGEPAMLEIARRRPATREALAAIPGVTPSVLGR 279
Query: 241 YMGPVLSIIKNSMQN 255
+ + +K + Q
Sbjct: 280 MGETIAAALKAAGQG 294
>gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
Length = 381
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 15/257 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+S R ++VD L+L + P LR + P + V+HG D DI L RDFGI + MF
Sbjct: 47 LQLSNRAGTWLVDPLRLS-DLSP-LRVLLARPGLRTVLHGGDYDIRSLHRDFGIVVQQMF 104
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++ L LL G+ +K +Q ADW RPL EM YA DT +LL +
Sbjct: 105 DTMVAAQFTGATEFGLAALLREHFGIELDKRFQKADWSKRPLTTEMADYAAHDTAHLLEL 164
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LN 179
D + +L + + ++ C L + + + +GAG L
Sbjct: 165 ADRLHARLEQLGRREWVAEE------------CALLVGNRVAEKGNGPLFLNCKGAGKLK 212
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+ LA++ L ++RD AR D V+P L++IA+ +P + + +
Sbjct: 213 PRNLAILEALLQFRDQQAREADRPAFKVIPAEALLKIAELVPAAVRDMNGIAGLTPRLLG 272
Query: 240 RYMGPVLSIIKNSMQNA 256
RY +L++++ + A
Sbjct: 273 RYGEQLLTVVRQGLAVA 289
>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
Length = 388
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 13/223 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST + V+D L + L + +DP + V+H AD D+ L++D+G + ++F
Sbjct: 47 LQLSTADHEAVIDPLP--IGTPTRLGVLLEDPQVEVVLHDADYDLRLLRQDYGWRVTHLF 104
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+++L + L LL F G+ +K++Q ADW +RPL +ML YA DT +LL +
Sbjct: 105 DTRVAAQLLGIRAFGLAALLEQFFGIKLDKKHQRADWSMRPLTADMLDYAAHDTRHLLGL 164
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
D + +L + S E + R+ +E E + S+L + G + LN
Sbjct: 165 RDRLHDELVQKGRWSWAQ-----EEFTRAEGTR---WEPE-APDTSFLRLKGAR--DLNR 213
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
++LA + L WRD IA D +T V N L+++A+Q P T
Sbjct: 214 RELARLRELVRWRDGIAAELDRATFRVAGNEVLLDLARQAPAT 256
>gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
Length = 288
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 14/223 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR +DFVVD + V V P L E+ D ++ V+HGAD D+ L R++G + +F
Sbjct: 50 LQLSTRAQDFVVDPIS--VDVRP-LGEILCD-GREVVLHGADYDVRCLHREYGWRIPRLF 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L L L+ GV +K +Q +DW RPL + L YA DTH+LL +
Sbjct: 106 DTMIAARRLGRPGLGLSALVEAHFGVRLSKAFQRSDWGRRPLTPDQLAYASLDTHFLLPL 165
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+D++ +L++ L E +K S + + + + + I G + L+A
Sbjct: 166 FDLLTGELATR--------GALEEAWKESQRIASVVARERVFDPEGWRRIKGSR--ELDA 215
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
AV+ L R+ ARA D VL ++EIA++ P T
Sbjct: 216 PGKAVLRALWIAREDRARASDRPPFKVLGEPAMLEIARRRPAT 258
>gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
Length = 288
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 14/223 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR +DFVVD + V V P L E+ D ++ V+HGAD D+ L R++G + +F
Sbjct: 50 LQLSTRAQDFVVDPIS--VDVRP-LGEILCD-GREVVLHGADYDVRCLHREYGWRIPRLF 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L L L+ GV +K +Q +DW RPL + L YA DTH+LL +
Sbjct: 106 DTMIAARRLGRPGLGLSALVEAHFGVRLSKAFQRSDWGRRPLTPDQLAYAALDTHFLLPL 165
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+D++ +L++ L E +K S + + + + + I G + L+A
Sbjct: 166 FDLLTGELATR--------GALEEAWKESQRIASVVARERVFDPEGWRRIKGSR--ELDA 215
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 223
AV+ L R+ ARA D VL ++EIA++ P T
Sbjct: 216 PGKAVLRALWIAREDRARASDRPPFKVLGEPAMLEIARRRPAT 258
>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
Length = 409
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 140/293 (47%), Gaps = 33/293 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST +E ++D L + + P L + +P +KV HGAD D+ L RDFG + N+F
Sbjct: 77 IQVSTNSETALIDPLA-PLDLSP-LAPILANPAVRKVFHGADYDMRSLYRDFGFEVRNLF 134
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ L + L L GV +K+YQ ADW RP +M+ YA +DT L+ +
Sbjct: 135 DTMIASQFLGEKEVGLAAALKKRFGVELDKKYQKADWSKRPFSPQMIEYAMKDTSLLIKL 194
Query: 121 Y----DIMKIK--LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
Y D ++ K L+ + +ESE ++ V S D +E +L G
Sbjct: 195 YLQLEDELRAKGRLAWVEEESEI----VSCVRAASRD-----------NEPLFLRFKG-- 237
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
A L + LAV+ L +RD AR D +L N L E+A+ LP TAA L +
Sbjct: 238 AAKLKPRSLAVLEKLLLFRDERARKRDVPPFRILGNEPLRELAELLPRTAADLTGIPGIS 297
Query: 235 HSYIERYMGPVLSIIKNSMQNAANF--------EVIAQKLKEERMEVASEETE 279
I+ Y +L+++ + A VI + +EER++ E E
Sbjct: 298 QKLIDTYGREILNVVAQGLSIPAEKLPHYPTVQRVIKDRYQEERLKRLKEWRE 350
>gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18]
gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18]
Length = 377
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 126/264 (47%), Gaps = 35/264 (13%)
Query: 1 MQISTRTEDFVVDTLK-LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+Q+S+ +E+ ++D L + V+V L +F +P KK+ HGAD D+ L RDFGI + N+
Sbjct: 54 IQVSSESENRLIDPLAPIDVRV---LAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNL 110
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT AS+ L L LL GV +K YQ ADW RP EML YA +DT L+
Sbjct: 111 FDTMIASQFLGESEFGLAALLKKRFGVELDKRYQKADWSKRPFSQEMLEYAMKDTSLLIE 170
Query: 120 IYD------IMKIKLSSMPKESE---NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
+Y + K +L+ + +ESE +P S L
Sbjct: 171 LYRQLEAELLAKGRLAWVEEESELVAGVRSP---------------------SREGELMC 209
Query: 171 YGLQGAG-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
+GA + ++LAV+ L ++RD AR D +L N L E+A++ P + +L
Sbjct: 210 LRFKGANKMKPRELAVLEELLKFRDEKARIADVPPFRILSNDLLRELAEKQPRSNFELVG 269
Query: 230 LLKSKHSYIERYMGPVLSIIKNSM 253
+ IER +L I N +
Sbjct: 270 IHTMSSKLIERLGRGLLQAIANGL 293
>gi|403368461|gb|EJY84065.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 547
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 80/129 (62%), Gaps = 9/129 (6%)
Query: 1 MQIST-RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA-DRDIVWLQRDFGIYLCN 58
+QI+T + +++D LKLR ++ YL +F+ T K+ HG + DI WLQRDFG N
Sbjct: 123 IQITTPDYQTYLIDCLKLREEIKTYLGAIFESHTTLKIFHGCVNSDITWLQRDFGFATVN 182
Query: 59 MFDTGQA-SRVLKLERNSLEYLLHHFCG--VNANKE----YQNADWRVRPLPDEMLRYAR 111
+FDT ++ ++ K +R SL +L +C V +KE +Q ADW +RPL EML YA
Sbjct: 183 VFDTQESYKKLFKGQRVSLLHLWTTYCKDRVKISKEQKNMFQKADWSMRPLSSEMLNYAA 242
Query: 112 EDTHYLLYI 120
D+HYL+YI
Sbjct: 243 HDSHYLIYI 251
>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
Length = 377
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 121/255 (47%), Gaps = 17/255 (6%)
Query: 1 MQISTRTEDFVVDTLK-LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+Q+S+ +ED ++D L + V+V L +F +P KK+ HGAD D+ L RDFGI + N+
Sbjct: 54 IQVSSASEDRLIDPLAPIDVKV---LAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNL 110
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT AS+ L L LL GV +K YQ ADW RP EML YA +DT L+
Sbjct: 111 FDTMIASQFLGESEFGLAALLKKRFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIE 170
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-L 178
+Y ++ +L + + + RS S L +GA +
Sbjct: 171 LYRQLEAELKQKGRLAWVEEESELVAGVRSP------------SREGELMCLRFKGASKM 218
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
++LAV+ L +RD AR D +L N L E+A++ P +L + I
Sbjct: 219 KPRELAVLEELLRFRDEKARLADVPPFRILSNDLLRELAEKQPRNNFELVGIHTMSSKLI 278
Query: 239 ERYMGPVLSIIKNSM 253
ER +L I N +
Sbjct: 279 ERLGRGLLQAIANGL 293
>gi|383761955|ref|YP_005440937.1| ribonuclease D [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381382223|dbj|BAL99039.1| ribonuclease D [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 395
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 147/329 (44%), Gaps = 36/329 (10%)
Query: 1 MQISTRTE------DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGI 54
+QIST DF+VD L+L+ + P L E+ DP + VMH AD DI+ L R +G
Sbjct: 50 IQISTYATGKEEILDFLVDPLRLK-DLSP-LGELLVDPAIEVVMHAADNDILMLYRSYGF 107
Query: 55 YLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
+FDT A+R+L ++ L +L G+ +NK Q DW RPL E + YA+ DT
Sbjct: 108 RFGRVFDTQLAARILGWKQVGLAAILEKHFGIVSNKRMQRTDWGKRPLTPEQIAYAQMDT 167
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
HYLL + D + +L + E D T S D ++ + E ++ + ++
Sbjct: 168 HYLLPLRDRLAEELRRKGRWEEALDAFATLT---SSDPATRMPD-----ERTFWQMRAVR 219
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ + L V+ L WR+ A++ D V+ + TLIE+AK P T L+
Sbjct: 220 --TVPQECLGVLEALWRWREQKAQSLDRPPFKVVNDATLIELAKTQPLTLDALKETPGLS 277
Query: 235 HSYIERYMGPVLSIIKNSMQNAA----------------NFEVIAQKLKEERMEVASEE- 277
+ R+ +L +I Q + L+ R EVA +
Sbjct: 278 PLQVRRFGEELLQVIHAGRQRPTPTPPDDEGRPEPMLDEAVQARYNALRRWRTEVAQQRG 337
Query: 278 -TEVLVLDTSSNLKIPNVGRESVDGVDAL 305
+VL S+ L I + ++D + AL
Sbjct: 338 VDADIVLPNSALLAIATLNPATLDALAAL 366
>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
Length = 377
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 121/255 (47%), Gaps = 17/255 (6%)
Query: 1 MQISTRTEDFVVDTLK-LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+Q+S+ +ED ++D L + V+V L +F +P KK+ HGAD D+ L RDFGI + N+
Sbjct: 54 IQVSSTSEDRLIDPLAPIDVKV---LAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNL 110
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT AS+ L L LL GV +K YQ ADW RP EML YA +DT L+
Sbjct: 111 FDTMIASQFLGESEFGLAALLKKRFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIE 170
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-L 178
+Y ++ +L + + + RS S L +GA +
Sbjct: 171 LYRQLEAELKQKGRLAWVEEESELVAGVRSP------------SREGELMCLRFKGASKM 218
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
++LAV+ L +RD AR D +L N L E+A++ P +L + I
Sbjct: 219 KPRELAVLEELLRFRDEKARLADVPPFRILSNDLLRELAEKQPRNNFELVGIHTMSSKLI 278
Query: 239 ERYMGPVLSIIKNSM 253
ER +L + N +
Sbjct: 279 ERLGRGLLQAVANGL 293
>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
Length = 382
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 27/228 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI + F++D L L L+ F DP KV+HGAD D+ L RDFGI + +F
Sbjct: 50 IQIGVNGDAFLIDPLALSDLSS--LKPFFADPGVIKVLHGADYDVRSLYRDFGITITGLF 107
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
D+ ASR L ++ L +++ GV +K + DW RPLP++ML YA D YL+ +
Sbjct: 108 DSEIASRFLGVQSTGLNDVVNRRFGVTMDKGCRKQDWTQRPLPEKMLSYAALDVRYLVDL 167
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH------IYGLQ 174
Y ++ +L M + ++ E ELLS Y + +
Sbjct: 168 YHQLQNELQQMGRAEWVAE------------------ECELLSRVRYANGEDTPLFVRFK 209
Query: 175 GAG-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
GAG L+ + LAV+ L R +AR D V+ N L+ +A++ P
Sbjct: 210 GAGRLSRRTLAVLEALLVARQKMARKKDRPPFKVMGNDALLRLAQERP 257
>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
Length = 377
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 13/230 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ + FVVD L + L+ VF+DP KV HG+D DI L RDF I++ N+F
Sbjct: 45 VQMADPNDSFVVDPLS--IDDLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLF 102
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A R L +++ SL LL + +K +Q DW RPL EM+ Y+ D YLL +
Sbjct: 103 DTEIACRFLGIQKRSLAALLEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLEL 162
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
DI+K +L D + +++ ++ +E +L G +
Sbjct: 163 SDILKKRL---------EDEGRLAWAEEEFELQTRVRHDNNGNEPLFLKFKG--SGKMGR 211
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ LAV+ L ++R +A D+ ++ + + ++A P T L+ L
Sbjct: 212 RSLAVLESLLQFRKTLAVEKDKPLFKIISSEAIAKMAANQPETLHSLKEL 261
>gi|381152499|ref|ZP_09864368.1| ribonuclease D [Methylomicrobium album BG8]
gi|380884471|gb|EIC30348.1| ribonuclease D [Methylomicrobium album BG8]
Length = 387
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 34/260 (13%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFK---DPTKKKVMHGADRDIVWLQRDFGIYLC 57
+QI+T VD + L P L E+F+ +P KV+H + +D+ + G
Sbjct: 47 LQIATPDWVACVDPIAL-----PRLDELFEALYNPGIVKVLHSSRQDLEIFYQLTGKLPS 101
Query: 58 NMFDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 116
+FDT A+ +L + N L+ H VN NK + ADW RPL +E ++YA +D Y
Sbjct: 102 PIFDTQVAAPLLGYQDNPGYAMLVSHLLNVNLNKAHTRADWSKRPLTEEEIQYAADDVIY 161
Query: 117 LLYIYDIMKIKLSSM-------PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 169
L IY +M+ KLS++ P +E S+ L EV L E+++
Sbjct: 162 LCRIYQLMRDKLSALGRLDWLQPDFAELSNPALYEV----------------LPEHAWRR 205
Query: 170 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 229
I G L +QL+++ L EWR+ A+ ++ G++L + L +IAK P TAA L +
Sbjct: 206 IKG--KNKLTGKQLSIIQALAEWRESTAQNENRPKGWLLRDELLFDIAKLQPETAADLAK 263
Query: 230 LLKSKHSYIERYMGPVLSII 249
+ + RY + II
Sbjct: 264 IRGINERTVSRYGAALCRII 283
>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
Length = 390
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 21/253 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+S ++ ++D L V + P L V D +KV HGAD D+ L RDFG+ +CNMF
Sbjct: 61 IQVSNLSQTALIDPLA-PVDLSP-LAPVLADRGIRKVFHGADYDMRSLYRDFGLEVCNMF 118
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A + L + L L GV NK+YQ ADW RP EM+ YA+ DT L+ +
Sbjct: 119 DTMIACQFLGEKEVGLAAALKKRFGVELNKKYQKADWSKRPFSAEMIEYAKMDTALLIRL 178
Query: 121 YDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
Y ++ +L + + E E+ R + E ++ G A
Sbjct: 179 YLQLEEELRAKGRLEWVEEESELVSCVRAASRDH-------------EPLFIRFKG--AA 223
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 236
L + LAV+ L RD AR D +L N L E+A+ P T A L +
Sbjct: 224 KLKPRALAVLEELLRMRDEKARKKDVPPFRILGNEPLRELAELQPRTLADLNGIPGLTQK 283
Query: 237 YIERYMGPVLSII 249
IE + +L ++
Sbjct: 284 LIETFGREILKVV 296
>gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica]
Length = 354
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 21/223 (9%)
Query: 1 MQISTRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 58
+Q S + E ++D L + +G YL E MHGAD D+ +R FG
Sbjct: 43 IQFSAKGESVLIDPLVIEDLSPLGSYLSEA------TVWMHGADYDMTMFKRQFGDLPKV 96
Query: 59 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
++DT +R+L R L L+ + GV +K Q ADW RPL +M+ YA D HYLL
Sbjct: 97 VYDTQIGARLLGARRFGLGDLVSLYFGVELSKSSQKADWGKRPLSPKMIEYALNDVHYLL 156
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG- 177
+ D++ KL + + Y+ + C + L ++S + +QG+G
Sbjct: 157 EMGDLIVTKLKDLGR------------YEWFLESCTAARRRVLDRDDSKEETWRIQGSGK 204
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
L+ + LA + L WRD AR+ D + V+PNR L+E + L
Sbjct: 205 LDRRGLAFLKELWTWRDSEARSWDRPSFMVVPNRQLLEWSVDL 247
>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
Length = 295
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLR-VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QIS+ D+++D L L+ + V L +F++P +KV+H A D++ L+RDF +
Sbjct: 45 IQISSPERDYIIDPLSLKDLSV---LGRLFENPRIEKVLHAASNDVLGLRRDFQFRFNGL 101
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A ++L ++ L +L GV+ NK +Q DW RPL + L YAR DTHYL+
Sbjct: 102 FDTAIACKLLGYKQLGLSKILETHFGVSLNKRWQRYDWGKRPLVPDQLDYARLDTHYLIA 161
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ ++ L S +E E ++++ + +Q+ EK +L I G L+
Sbjct: 162 LRHMLAADLQSRELWAEA-----CEAFEKASE--QQVPEKT-FHPRGFLQING--ARSLD 211
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
A +++ L +R+ AR D + ++ N L+ +A P + ++ R+
Sbjct: 212 AAGKSILKALYMFREKEARRRDRAPFRIMSNEALLRLADARPDSVDEISRI 262
>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
Length = 388
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 23/235 (9%)
Query: 1 MQISTRTEDFVVDTL-KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI++ +++VD L V+ L + ++ +K+ HGAD D+ L RDFGI L N+
Sbjct: 56 LQITSNGLNYIVDPLCDCDVKA---LAPILENDEIQKIFHGADYDVRCLFRDFGIELHNL 112
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+R L + L LL GV K+YQ +W +RPLP EM+ YA DT +LL
Sbjct: 113 FDTQVAARFLGEPQTGLAPLLESRFGVQLEKKYQKKNWSLRPLPPEMMAYAANDTVHLLE 172
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV---CRQLYEKELLSENSYLHIYGLQGA 176
+ +I+K KE D R + V C L + N +GA
Sbjct: 173 LAEILK-------KELVEKD--------RLFWVEEECEILTHARPMPPNDGPLFLRFRGA 217
Query: 177 G-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
G L+ + L V+ + RD +A+ + VL N ++E+A++ P L L
Sbjct: 218 GKLDPRSLQVLENILHVRDDLAKKWNRPLFKVLGNTPILEMAQKRPLNTKGLVSL 272
>gi|406573982|ref|ZP_11049722.1| putative ribonuclease D [Janibacter hoylei PVAS-1]
gi|404556583|gb|EKA62045.1| putative ribonuclease D [Janibacter hoylei PVAS-1]
Length = 555
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 17/208 (8%)
Query: 33 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 92
T + ++H A +D+ L D G+ +FDT A+R+L L R L ++ H+ G++ KE+
Sbjct: 103 TGEWILHAATQDLPCLG-DLGLRPRQIFDTELAARLLGLPRVGLAAVIEHYLGISLAKEH 161
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 152
DW RPLP+ LRYA D L + ++M I L++ K +E ++ ++
Sbjct: 162 SAVDWSTRPLPEPWLRYAALDVEVLTEVRNLMGIDLAAQDK---------SEWARQEFEA 212
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
L + + E+ + GL + LA V L RD IAR D S G V+P+
Sbjct: 213 L--LSWRPAVKEDPWRRTSGLHKI-RQPRVLATVRELWYERDRIARDRDTSPGRVIPDTA 269
Query: 213 LIEIAKQLPTTAAKLRRLLKSKHSYIER 240
L+EIA+ P+ L R H I+R
Sbjct: 270 LVEIAQANPSGPGDLPR----GHRAIQR 293
>gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
Length = 296
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 16/241 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+STR D++VD L V P L EV D ++ V+HGAD D+ L+R++G +L +F
Sbjct: 51 LQVSTRAADYIVDPLA--VDPSP-LGEVLCD-GRETVLHGADYDVRCLRREYGWHLPRLF 106
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L + L L+ GV +K +Q +DW RPL L YA DTHYLL +
Sbjct: 107 DTMAAARRLGRQGLGLSALVEAHFGVRLSKTFQRSDWGQRPLTAAQLAYAALDTHYLLAL 166
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE-LLSENSYLHIYGLQGAGLN 179
D++ +L ++ +E +R ++ + +E + + + G + L+
Sbjct: 167 RDMLAGELDTLGA---------SEQARREFERIAAVVARERVFDPEGFRRLRGAR--ELD 215
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
LAV+ + R+ A D VL +I IA++LP A +L R+ S +
Sbjct: 216 PAGLAVLRAIYVAREERASGLDRPPFKVLGEDAMIAIARRLPRDADELGRIPGVTPSVMR 275
Query: 240 R 240
R
Sbjct: 276 R 276
>gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2]
gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2]
Length = 381
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 122/258 (47%), Gaps = 21/258 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q ST +++ +VD L ++ + P L +FK K+ HGAD DI L RDF I + +F
Sbjct: 49 LQFSTPSKNILVDPLAVK-DLSP-LAPIFKSFGICKIFHGADYDIRSLYRDFKIEVNALF 106
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R L L L LL + K+YQ DW RPLP ML+YA DT +L+ +
Sbjct: 107 DTQIAARFLGLTDIGLASLLQGKLNITLKKKYQKKDWSQRPLPAPMLQYAVHDTCHLIPL 166
Query: 121 YDIMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 177
++ +K +P E T D E L N GAG
Sbjct: 167 AQNLREELVKTGRLPFVEEECQLQTTVRSASPGD------EPLFLKFN---------GAG 211
Query: 178 -LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 236
L+ + LAV+ + ++RD AR D V+ N ++ +AKQ P +L+ + H
Sbjct: 212 KLDRRSLAVLEAILQYRDRTARRRDVPLFKVMGNAQVMALAKQKPVRMTELKHIKGLSHK 271
Query: 237 YIERYMGPVLSIIKNSMQ 254
++ +L ++++++
Sbjct: 272 QAKQLGEGILKSVRHALK 289
>gi|84496254|ref|ZP_00995108.1| putative ribonuclease D [Janibacter sp. HTCC2649]
gi|84383022|gb|EAP98903.1| putative ribonuclease D [Janibacter sp. HTCC2649]
Length = 428
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 25/220 (11%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G+ +FDT +R+L L R L ++ H+ G+ KE+ D
Sbjct: 120 ILHAATQDLACLA-EVGLRPVQLFDTELGARLLGLPRVGLAAVVEHYLGLALAKEHSAVD 178
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L + ++M + L+ K + RQ
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLTELRNLMGVDLARQDKS----------------EWARQE 222
Query: 157 YEKELLSENSYLHIYGLQGAGLNA----QQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
+E L E + + +GLN + +AVV L RD IAR D S G +LP+
Sbjct: 223 FEALLTWEPTERVDPWRRTSGLNTIRSRRGVAVVRELWYARDDIARDRDTSPGRILPDAG 282
Query: 213 LIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
LI IA + PT+ A L S H I RY ++ +K +
Sbjct: 283 LISIATEAPTSPAD----LPSGHRAISRYGRQWVAAVKRA 318
>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
Length = 374
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 107/228 (46%), Gaps = 14/228 (6%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
L+ V D + +K+ H AD DI L RDF I + +FDT AS+ L E+ L +L +
Sbjct: 67 LKPVLADSSIRKIFHAADYDIRCLARDFDIEIRGLFDTMIASQFLGEEKVGLADVLGKYF 126
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
V +K +Q ADW RPL EM YA EDT +L + I++ P E E
Sbjct: 127 DVTLDKRFQRADWSKRPLSPEMCHYAAEDTRHLEKLVAILE------PALKEKDRLWWVE 180
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDES 203
R L E+ + ++GAG + + LA++ L EWR+ A+ D
Sbjct: 181 EEFR-------LLEQAKFRVHDGPAFLRIKGAGTMPPRALAILECLLEWREKEAQRRDCP 233
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 251
V+ N+ L+ A+ +PTT L+ L + +RY VL I+
Sbjct: 234 AYKVVGNKPLLSAARHMPTTMEALKDLEEFPARLADRYGRAVLKQIET 281
>gi|297727619|ref|NP_001176173.1| Os10g0437200 [Oryza sativa Japonica Group]
gi|255679435|dbj|BAH94901.1| Os10g0437200 [Oryza sativa Japonica Group]
Length = 89
Score = 90.9 bits (224), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 3/68 (4%)
Query: 106 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 165
+ RYAREDTHYLLYIYD+M+++L KES + + L EVYKRS ++C QLYEKELL+ +
Sbjct: 8 LFRYAREDTHYLLYIYDLMRLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHS 64
Query: 166 SYLHIYGL 173
SYL+I+G
Sbjct: 65 SYLYIHGF 72
>gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 1087
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 10/135 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST + +FV+D L L V +L+ +F+ P KV HG + D+ L++D L N+F
Sbjct: 918 LQLSTLSSNFVIDILNLSKSVSVHLKSIFESPKFVKVFHGGETDLKLLKKDLNFNLVNIF 977
Query: 61 DTGQASRVLKLERN------SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
DT +A L++N SL L + N +K+YQ +DWR+RPLP ML YA D+
Sbjct: 978 DTAKAY----LKQNKGAGSVSLSSLSQQYLNYNVDKQYQTSDWRIRPLPKPMLNYAMYDS 1033
Query: 115 HYLLYIYDIMKIKLS 129
L ++ +MK +S
Sbjct: 1034 FITLILFFVMKSTIS 1048
>gi|408418343|ref|YP_006759757.1| ribonuclease D Rnd [Desulfobacula toluolica Tol2]
gi|405105556|emb|CCK79053.1| Rnd: ribonuclease D [Desulfobacula toluolica Tol2]
Length = 377
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI++ E F+VD +++ ++ +L V ++ KV HG+D DI L RD+ + + N+F
Sbjct: 44 IQIASAKEAFLVDPFEIK-KISSFL-NVLENNDVMKVFHGSDFDIRSLDRDYHVQVNNLF 101
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A R L ++ L LL V+A+K++Q DW RPL M+ Y+ D YL+ +
Sbjct: 102 DTEIACRFLGIKERGLAALLKRNFDVDADKKFQKVDWAQRPLKQAMIEYSVGDVAYLVEL 161
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL-YEKELLSENSYLHIYGLQGAG-L 178
DI+ +L + + K +++ Q+ YE + +++ +GAG +
Sbjct: 162 QDIIHGRLKEKKRLAWA---------KEEFEIQAQVRYE----NNHTFPLFKKFKGAGKM 208
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + LAV+ L + R IA+ D+ V+ N +L+ +A + P T ++ ++
Sbjct: 209 DNRSLAVLENLLQMRLSIAQKKDQPLFKVISNPSLMTMACEKPLTIDRILKI 260
>gi|359689033|ref|ZP_09259034.1| ribonuclease D [Leptospira licerasiae serovar Varillal str.
MMD0835]
Length = 372
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS++ ++++ D ++L G L +F++P K+ H A DI L+RDFG N+
Sbjct: 31 IQISSKGKNYIFDPIRLDDLNG--LGPLFENPNILKIFHSASDDIKALKRDFGFKFINIA 88
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +SR+L LE+NSL YL+ H+ V +K+ Q ++W RPL L+YA DT YL I
Sbjct: 89 DTMFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLESI 148
Query: 121 YDIM 124
+ M
Sbjct: 149 WTKM 152
>gi|418749157|ref|ZP_13305449.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
gi|418757399|ref|ZP_13313587.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384117070|gb|EIE03327.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404276226|gb|EJZ43540.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
Length = 389
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS++ ++++ D ++L G L +F++P K+ H A DI L+RDFG N+
Sbjct: 48 IQISSKGKNYIFDPIRLDDLNG--LGPLFENPNILKIFHSASDDIKALKRDFGFKFINIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +SR+L LE+NSL YL+ H+ V +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTMFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLESI 165
Query: 121 YDIM 124
+ M
Sbjct: 166 WTKM 169
>gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
Length = 352
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 18/222 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKD-PTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QIS D ++D L G L+ +F+ K+ ++HGAD D+ L+R +
Sbjct: 43 IQISVPGHDLLIDPL-----AGISLQPLFEAFAGKELIIHGADYDLRLLRRVGFTVTAPV 97
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+R+ +E SL L+ + V K Q A+W RPL +M YA +DTHYLL
Sbjct: 98 FDTMIAARLCGIEEFSLAALIKRYFDVALTKASQKANWARRPLSPQMADYAVKDTHYLLE 157
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA-GL 178
I I++ +L+ + + E +++S D + + + E ++ + G+ L
Sbjct: 158 IAGILEAELTRLDR---------MEWFRQSCD--KAVAASAITKERDPEEVWRITGSKDL 206
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
+ A++ L WR+ A+A D T ++L + LIE A +L
Sbjct: 207 RGRASAILRALWHWREAEAQAVDRPTFHILHSEQLIEAAAKL 248
>gi|398348927|ref|ZP_10533630.1| ribonuclease III [Leptospira broomii str. 5399]
Length = 389
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS++ ++++ D ++L G L +F++P K+ H A DI L+RDF N+
Sbjct: 48 IQISSKGKNYIFDPIRLADVSG--LGPLFENPAILKIFHSASDDIKALKRDFSFKFVNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +SR+L LE+NSL YL+ H+ V +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTMFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSNWEKRPLDKSQLQYAALDTVYLESI 165
Query: 121 YDIMKIKLS 129
++ M+ +L+
Sbjct: 166 WEKMREELA 174
>gi|398343905|ref|ZP_10528608.1| ribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 389
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS++ ++++ D ++L G L +F++P K+ H A DI L+RDF N+
Sbjct: 48 IQISSKGKNYIFDPIRLADVSG--LGPLFENPAILKIFHSASDDIKALKRDFSFKFVNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +SR+L LE+NSL YL+ H+ V +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTMFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSNWEKRPLDKSQLQYAALDTVYLESI 165
Query: 121 YDIMKIKLS 129
++ M+ +L+
Sbjct: 166 WEKMREELA 174
>gi|404498237|ref|YP_006722343.1| ribonuclease D [Geobacter metallireducens GS-15]
gi|418065969|ref|ZP_12703338.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
gi|78195834|gb|ABB33601.1| ribonuclease D, putative [Geobacter metallireducens GS-15]
gi|373561476|gb|EHP87711.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
Length = 382
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 18/217 (8%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVN 87
VF +P+ +KV HGAD DI L RDFGI + N+FDT A + L L +L GV
Sbjct: 74 VFANPSIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQFLGEREFGLAAVLRKRFGVE 133
Query: 88 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLT 143
+K+YQ ADW RPL M+ YA +DT L+ + ++ +L + E E +
Sbjct: 134 LDKQYQRADWSRRPLTAGMIEYAAKDTTLLIELCGRLEAELREKGRIGWVEEECALLARV 193
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
V +RS E +L G + + ++ LAV+ + +RD A+ D
Sbjct: 194 RVAQRSD------------GEPMFLRFKG--ASRMASRSLAVLEEILCFRDRRAQQMDVP 239
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
VL T+ E+A++ P + A+L + +ER
Sbjct: 240 PFKVLGTETVRELAEKKPRSLAELTGITGITERVVER 276
>gi|398334995|ref|ZP_10519700.1| ribonuclease III [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 366
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+
Sbjct: 26 IQISAKGKNYIIDPLKLQNLDG--LGTLFEDKKILKIFHSAIDDIKALKKDFGFKFVNIA 83
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 84 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 143
Query: 121 YDIMKIKLS 129
++ MK +L+
Sbjct: 144 WEKMKEELT 152
>gi|269956679|ref|YP_003326468.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
gi|269305360|gb|ACZ30910.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
Length = 420
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G+ ++FDT A+R+L LER L ++ G+ KE+ D
Sbjct: 111 ILHAASQDLPGLA-EHGLRPASVFDTELAARLLGLERVGLAAVVADTLGLGLAKEHSAVD 169
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP + LRYA D L + D++ +L+ K +E + ++ R
Sbjct: 170 WSTRPLPVDWLRYAALDVEVLGEVRDVLAERLADAGK---------SEWAAQEFEAVRT- 219
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + + G + ++LAVV L E RD ARA D + G VLP+R ++
Sbjct: 220 APPPPPRVDPWRRVSGTHTL-RDRRKLAVVRALWEARDASARARDVAPGRVLPDRAIVAA 278
Query: 217 AKQLPTTAAKL 227
A LP TA +L
Sbjct: 279 ANALPRTAGQL 289
>gi|385792618|ref|YP_005825594.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
Length = 364
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 41 VQLATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+
Sbjct: 99 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L +SE D L EV K ++ EN + I +Q
Sbjct: 159 LKEYLQQQLV----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+TL IA
Sbjct: 205 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKTLYTIA 243
>gi|305680942|ref|ZP_07403749.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
gi|305659147|gb|EFM48647.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
Length = 408
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A D+ +L++ + +FDT A R L R +L ++ H+ GV K + D
Sbjct: 93 VVHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGFHRVNLAAMVEHYLGVRLRKNHGGED 151
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RP+P E L YA D YLL + D M+ +L+ +P E D ++
Sbjct: 152 WSRRPIPSEWLDYAALDVEYLLPLADAMRSELT--------QQSPKDEWVAEECDYLTRV 203
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
Y + S+ + G++ ++QL V L + R+ +A+A D + +LP++TL+ +
Sbjct: 204 YRGYSPTPKSWEDLKGVRRLR-TSKQLQVARWLWQVREKLAQASDTAVSRLLPDKTLVAL 262
Query: 217 AKQLPTTAAKL 227
A +LPTT K+
Sbjct: 263 ATELPTTVPKV 273
>gi|440793720|gb|ELR14896.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 317
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 16/225 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPY----LREVFKDPTKKKVMHGADRDIVWLQRDFGIYL 56
+Q++ V DT+ L +Q P LR +D + HGA D+ +RDF I L
Sbjct: 46 IQMNVEGVLLVFDTMAL-MQADPLALEPLRPYLEDGQRLIFAHGAANDVSTFKRDFDISL 104
Query: 57 CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 116
+FDT +A+++ L + ++ V+ +K+Y + +W +RP+ E LRYA ED Y
Sbjct: 105 NGLFDTQRAAQLAGLAHTNYGAVVESLLSVSLSKDYTHYNWGLRPIELEPLRYALEDVVY 164
Query: 117 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
L + +++ ++ + E E + + S+ R+L + L ++ ++G
Sbjct: 165 LPQVGHMLRARVQELGVEEELAAVNRMLMAMPSHP--RRLDDLAL--------VHSIRGT 214
Query: 177 G-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
G L+ QL V+ L WRD AR D G V+ N L++IA+ L
Sbjct: 215 GNLDPVQLGVMGALFLWRDAKAREFDRPCGSVISNERLVKIARAL 259
>gi|148272845|ref|YP_001222406.1| putative ribonuclease D [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830775|emb|CAN01715.1| putative ribonuclease D [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 496
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 24/217 (11%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT ASR+L L R L ++ G++ KE+ AD
Sbjct: 177 VLHAASQDLACL-REVGLDPQRIFDTELASRLLGLPRVGLGTVVEELLGIHLAKEHSAAD 235
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 152
W RPLP L YA D L+ + D + +L K E E + T E +
Sbjct: 236 WSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTGIAEQEFAATIAKEAKPARVEP 295
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R+L S LH G++G + LAV L E RD AR D S G ++P+ +
Sbjct: 296 WRRL---------SGLH--GVRG----GRNLAVAKELWEARDAYAREVDTSPGRLVPDGS 340
Query: 213 LIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 245
L+ +A+ LP T L + ++ S I+R+ V
Sbjct: 341 LVAVARVLPQTKRDLAAVREFSGRASRSEIDRWWAAV 377
>gi|170782038|ref|YP_001710370.1| ribonuclease [Clavibacter michiganensis subsp. sepedonicus]
gi|169156606|emb|CAQ01757.1| putative ribonuclease [Clavibacter michiganensis subsp.
sepedonicus]
Length = 443
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
L EV +D + V+H A +D+ L R+ G+ +FDT ASR+L L R L ++
Sbjct: 114 LDEVIRD--VEWVLHAASQDLACL-REVGLDPQRIFDTELASRLLGLPRVGLGTVVEELL 170
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDT 140
G++ KE+ ADW RPLP L YA D L+ + D + +L K E E + T
Sbjct: 171 GIHLAKEHSAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTAIAEQEFAAT 230
Query: 141 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
E + R+L S LH G++G + LAV L E RD AR
Sbjct: 231 IAKEAKPARVEPWRRL---------SGLH--GVRG----GRGLAVAKELWEARDAYAREV 275
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 245
D S G ++P+ +L+ +A+ LP T L + ++ S I+R+ V
Sbjct: 276 DTSPGRLVPDGSLVAVARILPQTKRDLAAVREFSGRASRSEIDRWWAAV 324
>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752196|ref|ZP_16189228.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|421754061|ref|ZP_16191044.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|421757785|ref|ZP_16194655.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|421759628|ref|ZP_16196457.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|424674949|ref|ZP_18111861.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409085560|gb|EKM85698.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|409085718|gb|EKM85850.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|409090457|gb|EKM90474.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|409091730|gb|EKM91720.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|417434204|gb|EKT89163.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
Length = 364
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 41 VQLATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+
Sbjct: 99 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 159 LKEYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 205 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
Length = 364
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 41 VQLATENEIFLIDTLK-DLEFKK-LKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+
Sbjct: 99 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 159 LKEYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 205 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
Length = 364
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 41 VQLATENEIFLIDTLK-DLEFKK-LKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+
Sbjct: 99 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 159 LKEYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 205 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|422939063|ref|YP_007012210.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|407294214|gb|AFT93120.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
Length = 364
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 41 VQLATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+
Sbjct: 99 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 159 LKEYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 205 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
gi|423051113|ref|YP_007009547.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|421951835|gb|AFX71084.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
Length = 363
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 41 VQLATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+
Sbjct: 99 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 159 LKEYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 205 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|410941522|ref|ZP_11373317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
gi|410783321|gb|EKR72317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
Length = 372
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL+ G L +F+D KV H A DI L++DFG N+
Sbjct: 26 IQISAKGKNYIIDPLKLQNLEG--LGNLFEDKKILKVFHSAIDDIKALKKDFGFQFQNIA 83
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 84 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 143
Query: 121 YDIMK 125
++ M+
Sbjct: 144 WEKMR 148
>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
Length = 364
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 41 VQLATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+
Sbjct: 99 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 159 LKEYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 205 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|418720286|ref|ZP_13279484.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|418738363|ref|ZP_13294758.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|410743264|gb|EKQ92007.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|410745856|gb|EKQ98764.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456888486|gb|EMF99469.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200701203]
Length = 388
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFHNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMKIKLS 129
++ MK +L+
Sbjct: 166 WEKMKEELT 174
>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 388
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFHNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMKIKLS 129
++ MK +L+
Sbjct: 166 WEKMKEELT 174
>gi|28572529|ref|NP_789309.1| ribonuclease [Tropheryma whipplei TW08/27]
gi|28410661|emb|CAD67047.1| putative ribonuclease [Tropheryma whipplei TW08/27]
Length = 360
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 14/196 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A DI L+R GI++ N+FDT A R+L + + +L Y+ F V KEY +
Sbjct: 61 VIHAAINDIKSLKR-VGIHITNLFDTEIACRLLNIPKVNLSYVTEKFINVKLRKEYSTVN 119
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPL + L YA D +LL + +K L +EN E + + V +
Sbjct: 120 WSARPLNKKYLEYAEGDVKHLLDLSQALKTAL-----RAENKLEIAKEEFSHVFMVVK-- 172
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
++ E+ + + H GL+ + Q AV L + RD IAR+ D T +L N+ + +
Sbjct: 173 HQSEIDKLDKFCH--GLE----DDMQRAVAKNLWKARDEIARSKDIFTPRILSNKAIRIL 226
Query: 217 AKQLPTTAAKLRRLLK 232
AKQ+P L+ LLK
Sbjct: 227 AKQVPENLEILKTLLK 242
>gi|421099052|ref|ZP_15559712.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
gi|410797786|gb|EKR99885.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
Length = 388
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMKIKLS 129
++ MK +L+
Sbjct: 166 WEKMKEELT 174
>gi|398332245|ref|ZP_10516950.1| ribonuclease III [Leptospira alexanderi serovar Manhao 3 str. L 60]
gi|456860990|gb|EMF79700.1| 3'-5' exonuclease [Leptospira weilii serovar Topaz str. LT2116]
Length = 388
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMKIKLS 129
++ MK +L+
Sbjct: 166 WEKMKEELT 174
>gi|359729247|ref|ZP_09267943.1| ribonuclease D [Leptospira weilii str. 2006001855]
gi|417777730|ref|ZP_12425544.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
gi|410782027|gb|EKR66592.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
Length = 388
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMKIKLS 129
++ MK +L+
Sbjct: 166 WEKMKEELT 174
>gi|421095097|ref|ZP_15555810.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
gi|410361807|gb|EKP12847.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
Length = 439
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+
Sbjct: 99 IQISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFHNIA 156
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 157 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 216
Query: 121 YDIMKIKLS 129
++ MK +L+
Sbjct: 217 WEKMKEELT 225
>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|254370381|ref|ZP_04986386.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|379717133|ref|YP_005305469.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|379725737|ref|YP_005317923.1| ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|385794536|ref|YP_005830942.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|421755410|ref|ZP_16192356.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|377827186|gb|AFB80434.1| Ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|377828810|gb|AFB78889.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|409088212|gb|EKM88289.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
Length = 364
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 41 VQLATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+
Sbjct: 99 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 159 LKEYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 205 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|28493361|ref|NP_787522.1| ribonuclease D [Tropheryma whipplei str. Twist]
gi|28476402|gb|AAO44491.1| ribonuclease D [Tropheryma whipplei str. Twist]
Length = 391
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 14/196 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A DI L+R GI++ N+FDT A R+L + + +L Y+ F V KEY +
Sbjct: 92 VIHAAINDIKSLKR-VGIHITNLFDTEIACRLLNIPKVNLSYVTEKFINVKLRKEYSTVN 150
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPL + L YA D +LL + +K L +EN E + + V +
Sbjct: 151 WSARPLNKKYLEYAEGDVKHLLDLSQALKTAL-----RAENKLEIAKEEFSHVFMVVK-- 203
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
++ E+ + + H GL+ + Q AV L + RD IAR+ D T +L N+ + +
Sbjct: 204 HQSEIDKLDKFCH--GLE----DDMQRAVAKNLWKARDEIARSKDIFTPRILSNKAIRIL 257
Query: 217 AKQLPTTAAKLRRLLK 232
AKQ+P L+ LLK
Sbjct: 258 AKQVPENLEILKTLLK 273
>gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea blandensis MED297]
gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297]
Length = 380
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 121/254 (47%), Gaps = 17/254 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ + +++D L++ P +R V DP KV+H D L G+ L N+F
Sbjct: 46 IQVGIEDQVWLIDPLQIN-DWAPLVR-VLSDPAIVKVLHALSEDAEVLAHHLGVELQNVF 103
Query: 61 DTGQASRVL-KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + S L+ C V KE +DW RPL DE YA D +L
Sbjct: 104 DTQIAAGFLGHPVQMSYARLVEAICDVELPKEATRSDWLQRPLADEQCFYAAADVLWLYR 163
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-L 178
+Y +L + +N + E D R + + SY L+GA L
Sbjct: 164 VYQHCAAQL-----KEQNRYAWVAE------DSQRMVSNNRPVPPQSYYQ--KLRGAWKL 210
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
++L V+ LCEWR+ +ARA + + G +L ++ LI +A+++PT+ + L++ + I
Sbjct: 211 KGERLLVLQLLCEWRENLARATNSNRGRILQDKDLITLAEKMPTSRSMLQKQVNIPSRKI 270
Query: 239 ERYMGPVLSIIKNS 252
Y ++++I+ +
Sbjct: 271 RLYGDELIAMIERA 284
>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
Length = 399
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 67 VQLATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIF 124
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+
Sbjct: 125 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQ 184
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 185 LKEYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 230
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 231 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 269
>gi|456877521|gb|EMF92536.1| 3'-5' exonuclease [Leptospira santarosai str. ST188]
Length = 366
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKLR G L +F++ K+ H A DI L++DFG N+
Sbjct: 26 IQISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIA 83
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 84 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 143
Query: 121 YDIMKIKL 128
++ MK +L
Sbjct: 144 WEKMKDEL 151
>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
Length = 364
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 41 VQLATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L Y+ +D YL+
Sbjct: 99 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYSIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 159 LKEYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 205 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|421121879|ref|ZP_15582169.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
gi|410345216|gb|EKO96335.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
Length = 388
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL Q L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMK 125
++ MK
Sbjct: 166 WEKMK 170
>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|386075688|ref|YP_005990008.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|417761741|ref|ZP_12409746.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|417771399|ref|ZP_12419294.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417772941|ref|ZP_12420827.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|417785994|ref|ZP_12433691.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|418667421|ref|ZP_13228833.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671067|ref|ZP_13232422.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|418683302|ref|ZP_13244507.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692063|ref|ZP_13253144.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|418702415|ref|ZP_13263323.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418704115|ref|ZP_13264995.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710116|ref|ZP_13270898.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418728912|ref|ZP_13287481.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|421083604|ref|ZP_15544478.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|421101603|ref|ZP_15562215.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115524|ref|ZP_15575929.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421126273|ref|ZP_15586510.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421135637|ref|ZP_15595758.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|353459480|gb|AER04025.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|400324875|gb|EJO77159.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400358126|gb|EJP14242.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|409942474|gb|EKN88086.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|409946596|gb|EKN96605.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409950823|gb|EKO05345.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|410012826|gb|EKO70912.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020301|gb|EKO87105.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410368775|gb|EKP24151.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433965|gb|EKP78302.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|410436223|gb|EKP85342.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410577276|gb|EKQ40272.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|410581930|gb|EKQ49736.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|410757024|gb|EKR18642.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410758584|gb|EKR24813.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410766337|gb|EKR37024.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410769574|gb|EKR44805.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410776315|gb|EKR56294.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|455667095|gb|EMF32456.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|455792168|gb|EMF43937.1| 3'-5' exonuclease [Leptospira interrogans serovar Lora str. TE
1992]
gi|456823784|gb|EMF72221.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456966971|gb|EMG08438.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 388
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL Q L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMK 125
++ MK
Sbjct: 166 WEKMK 170
>gi|346310745|ref|ZP_08852758.1| ribonuclease D [Collinsella tanakaei YIT 12063]
gi|345897238|gb|EGX67165.1| ribonuclease D [Collinsella tanakaei YIT 12063]
Length = 377
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 20/234 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E V+D + + + P L + +D KV H +D+ L G +F
Sbjct: 41 VQVATPDECVVIDVIAID-NLAP-LAILMRDEGTVKVFHACSQDMEVLNYTLGALPAPIF 98
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L ER Y ++H FCGV K DW RPL E + YA +D YL+
Sbjct: 99 DTQVAAAFLG-ERMQASYNGMVHAFCGVTLPKSESLTDWSRRPLTPEQIEYALDDVRYLI 157
Query: 119 YIYDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
YD++ +L + S D PLT+ + Y V R++ K + NS
Sbjct: 158 KAYDVIMERLDKSGRASWVLDEIKPLTD--RSHYVVDRRVAFKRVKRVNS---------- 205
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +QLAV L WR+ A + +++ + LI ++K+ P AA LRR+
Sbjct: 206 -LTRRQLAVARELAAWREARAEYSNIPRKWLMSDEVLIALSKRPPHDAASLRRV 258
>gi|456983567|gb|EMG19831.1| 3'-5' exonuclease [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 388
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL Q L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMK 125
++ MK
Sbjct: 166 WEKMK 170
>gi|359684501|ref|ZP_09254502.1| ribonuclease D [Leptospira santarosai str. 2000030832]
gi|410449393|ref|ZP_11303448.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
gi|410016618|gb|EKO78695.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
Length = 388
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKLR G L +F++ K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMK 125
++ MK
Sbjct: 166 WEKMK 170
>gi|418715523|ref|ZP_13275644.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
gi|418727334|ref|ZP_13285929.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|409959575|gb|EKO23345.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|410788424|gb|EKR82142.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
Length = 388
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL Q L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKL--QNLENLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMK 125
++ MK
Sbjct: 166 WEKMK 170
>gi|225021280|ref|ZP_03710472.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
ATCC 33806]
gi|224946013|gb|EEG27222.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
ATCC 33806]
Length = 408
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A D+ +L++ + +FDT A R L R +L ++ ++ GV K + D
Sbjct: 93 VVHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGFHRVNLAAMVEYYLGVRLRKNHGGED 151
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RP+P E L YA D YLL + D M+ +L+ +P E D ++
Sbjct: 152 WSRRPIPSEWLDYAALDVEYLLPLADAMRSELT--------QQSPKDEWVAEECDYLTRV 203
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
Y + S+ + G++ ++QL V L + R+ +A+A D + +LP++TL+ +
Sbjct: 204 YRGYSPTPKSWEDLKGVRRLR-TSKQLQVARWLWQVREKLAQASDTAVSRLLPDKTLVAL 262
Query: 217 AKQLPTTAAKL 227
A +LPTT K+
Sbjct: 263 ATELPTTVPKV 273
>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella novicida U112]
gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella novicida FTE]
gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
Length = 364
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTL+ ++ L+E+F+D K++H A DI ++R F + N+F
Sbjct: 41 VQLATENEIFLIDTLE-DLEFKK-LKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+
Sbjct: 99 DTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+ + ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 159 LKEYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKF 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 205 DEKTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829]
gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829]
gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829]
Length = 376
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 26/237 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN-- 58
+Q++TR+E +VD L + L ++F D K+ H +D L+ + I+ C
Sbjct: 41 IQLATRSEIVLVDPLSIPDLTD--LCKLFLDKKITKIFHACSQD---LELIYDIFSCLPK 95
Query: 59 -MFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTH 115
+FDT A+ L R + Y L+ C V+ K DW RPL +E L YA +D
Sbjct: 96 PVFDTQVAAAFLG-HRFQIGYGPLVDALCHVHLPKAESLTDWTRRPLAEEQLEYAADDVR 154
Query: 116 YLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS--ENSYLHIYGL 173
YL +YD + +L KE E L E++ +VC E ++ + +YLH+ +
Sbjct: 155 YLPRMYDTLLHEL----KEKERYAWFLEEMH----EVCN---EHHVIKKPQEAYLHMRRI 203
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ L +QLA+ + WRDVIA D +V+P+ +I++ K +P T +L R+
Sbjct: 204 --SSLTRKQLAIAREIGIWRDVIASHKDIPRKWVIPDEIVIDLCKSVPKTMERLERI 258
>gi|374585390|ref|ZP_09658482.1| 3'-5' exonuclease [Leptonema illini DSM 21528]
gi|373874251|gb|EHQ06245.1| 3'-5' exonuclease [Leptonema illini DSM 21528]
Length = 377
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 20/233 (8%)
Query: 1 MQISTRTEDFVVDTL-KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QIST ++ F++DTL KL +Q L +F K+ H A D+ +R +G N+
Sbjct: 45 IQISTDSQHFIIDTLAKLELQ---RLAHIFAGQNIPKIFHAAASDMGEFRRQYGWSFANV 101
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+R L+ E SL L+ + GV K+ Q ++W RPL L YA DT +Y
Sbjct: 102 FDTHMAARYLRHEACSLLALVQRYVGVELEKKEQKSNWMKRPLTKSQLDYAHLDT---VY 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE-----NSYLHIYGLQ 174
+Y IM+ M +E E + + E ++ D + + EL E N+++ + G
Sbjct: 159 LYQIMQ----QMKEELERAG--VMEEFQAEMDWMCEGGDDELEIEKPDNPNAWMRVNG-- 210
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
L+A A + R+ A+ ++ + ++ NR L + ++LP T +L
Sbjct: 211 AIRLSASARGRFAAVYALREERAKKENIAAFRLMTNRNLFRLVEELPETTDEL 263
>gi|421110867|ref|ZP_15571356.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
gi|410803772|gb|EKS09901.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
Length = 366
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKLR G L +F++ K+ H A DI L++DFG N+
Sbjct: 26 IQISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIA 83
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 84 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 143
Query: 121 YDIMKIKL 128
+ MK +L
Sbjct: 144 WGKMKDEL 151
>gi|405355820|ref|ZP_11024932.1| Ribonuclease D [Chondromyces apiculatus DSM 436]
gi|397091092|gb|EJJ21919.1| Ribonuclease D [Myxococcus sp. (contaminant ex DSM 436)]
Length = 378
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 124/273 (45%), Gaps = 25/273 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTL+ V V L + DP + K H A D+ +L + G+ + +F
Sbjct: 38 LQLATDAEVFLLDTLQPGV-VPDMLAPLMADPARTKFFHAAQGDLQFLA-EVGVRVQGLF 95
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A+ +L + L L GV KE+Q +D+ +RPLP M Y D YL
Sbjct: 96 DTHRAATLLGWPKVGLADLARERLGVELPKEHQQSDFSIRPLPPGMREYIANDVRYL--- 152
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+L +++ L EV D R E + + L +GLN
Sbjct: 153 -----CELGRQVRDACREADILEEVL---LDCVRMCDEAAARPDVGADYKPKLPRSGLNP 204
Query: 181 QQLAVVAGLC--------EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 232
QL + + EW A ++ G +L N L +IA +LPTT +L R+
Sbjct: 205 TQLTLAHAIAQVLHRKRLEW----AEKENVPMGRMLSNMALGDIAAKLPTTQKELARMAG 260
Query: 233 SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQK 265
+ S++ + +L++++ ++ + E+ ++
Sbjct: 261 VRGSFVRTHGDELLALVREQLEKSRRGELAPER 293
>gi|418746085|ref|ZP_13302416.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
gi|410792916|gb|EKR90840.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
Length = 388
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKLR G L +F++ K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMK 125
+ MK
Sbjct: 166 WGKMK 170
>gi|418752957|ref|ZP_13309213.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|422002805|ref|ZP_16350040.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
gi|409966640|gb|EKO34481.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|417258550|gb|EKT87937.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
Length = 388
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKLR G L +F++ K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMK 125
+ MK
Sbjct: 166 WGKMK 170
>gi|108760811|ref|YP_634116.1| ribonuclease D [Myxococcus xanthus DK 1622]
gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
Length = 389
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 124/269 (46%), Gaps = 17/269 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T + F++DTL+ V G L + DP + K H A D+ +L + G+ + +F
Sbjct: 49 LQLATDDQVFLLDTLQPGVVPG-MLAPLMADPARTKFFHAAQGDLQFLA-EVGVRVQGLF 106
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A+ +L + L L GV KE+Q +D+ +RPLP M Y D YL
Sbjct: 107 DTHRAATLLGWPKVGLADLARERLGVELPKEHQQSDFSIRPLPPGMREYIANDVRYL--- 163
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+L +++ L EV +C + + + + L AGLN
Sbjct: 164 -----CELGRQVRDACREADILEEVLLDCVRLCDEAAARPDVGADFK---PKLPRAGLNP 215
Query: 181 QQL----AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 236
Q+ A+ L R A D+ G +L N L +IA +LPT +L R+ + S
Sbjct: 216 TQMTLAHAIAHALHRKRLEWAEKDNVPMGRMLSNMALGDIAVKLPTNPKELARMAGVRGS 275
Query: 237 YIERYMGPVLSIIKNSMQNAANFEVIAQK 265
+I + +L++++ ++ + E+ ++
Sbjct: 276 FIRSHGEELLAVVRELLEKSRRGELAPER 304
>gi|418679035|ref|ZP_13240300.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418685440|ref|ZP_13246616.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418740873|ref|ZP_13297249.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421089663|ref|ZP_15550467.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|421131604|ref|ZP_15591784.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|400320450|gb|EJO68319.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|410001487|gb|EKO52083.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|410356978|gb|EKP04263.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|410740048|gb|EKQ84770.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410751468|gb|EKR08445.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 388
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL Q L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMK 125
+ MK
Sbjct: 166 WAKMK 170
>gi|403714102|ref|ZP_10940065.1| ribonuclease D [Kineosphaera limosa NBRC 100340]
gi|403211772|dbj|GAB94748.1| ribonuclease D [Kineosphaera limosa NBRC 100340]
Length = 434
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G+ +FDT R+ L R L +L H+ GV KE+ D
Sbjct: 127 ILHAATQDLPCLA-EVGMRPQQLFDTELGGRLAGLPRVGLSAVLEHYLGVRLAKEHSAVD 185
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L + D + L K ++ RQ
Sbjct: 186 WSTRPLPEPWLRYAALDVELLAELRDAVAADLREQGK----------------WEWARQE 229
Query: 157 YEKELLS-------ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 209
+E LLS + + G+ + + +V L RD IAR D + G VLP
Sbjct: 230 FEA-LLSFTGPPPRVDPWRRTSGIHKVR-GRRNVGIVRDLWLARDQIARTRDIAAGRVLP 287
Query: 210 NRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 255
+ L+++A+ P T+A L + S+H + RY L+ I+ ++
Sbjct: 288 DAVLLQLAQATPRTSADLPSI--SRHKAVGRYGETWLNAIRTGLER 331
>gi|398340441|ref|ZP_10525144.1| ribonuclease III [Leptospira kirschneri serovar Bim str. 1051]
gi|418693755|ref|ZP_13254804.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|421106132|ref|ZP_15566708.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
gi|409958332|gb|EKO17224.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|410008854|gb|EKO62514.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
Length = 388
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL Q L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETI 165
Query: 121 YDIMK 125
+ MK
Sbjct: 166 WAKMK 170
>gi|333985394|ref|YP_004514604.1| ribonuclease D [Methylomonas methanica MC09]
gi|333809435|gb|AEG02105.1| ribonuclease D [Methylomonas methanica MC09]
Length = 385
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHF 83
L +V +P KV+H +D+ + G +FDT A+ +L + N L+ F
Sbjct: 66 LFDVIYNPEIVKVLHSCRQDLEIFFQITGRIPGPIFDTQIAAPLLGFQENPGYAMLVSSF 125
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSD 139
+N +K + DW RPL ++ ++YA +D YL IY M +L + + ES+ +
Sbjct: 126 LNINLSKAHTRTDWTQRPLSEDQIQYAADDVIYLCKIYTTMCEQLEKLGRLDWLESDFAL 185
Query: 140 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 199
E+Y+ S EN++L I G L +QL+++ L EWR+ A+
Sbjct: 186 LNNAELYQLS-------------PENAWLKIRG--KNKLTGRQLSILQSLSEWREQTAQT 230
Query: 200 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 254
+++ ++ P+ L+E+AK P T A L ++ + RY + +I + Q
Sbjct: 231 ENKPRNWLFPDDMLLELAKLQPVTLADLGKIRNINERSVNRYGKTLCELIDVARQ 285
>gi|417767687|ref|ZP_12415623.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400349705|gb|EJP01993.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
Length = 388
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + +++++D LKL Q L +F+D K+ H A DI L++DFG N+
Sbjct: 48 IQISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIA 105
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DTG +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL +YA DT YL I
Sbjct: 106 DTGFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQFQYAALDTVYLETI 165
Query: 121 YDIMK 125
++ MK
Sbjct: 166 WEKMK 170
>gi|387824213|ref|YP_005823684.1| Ribonuclease D [Francisella cf. novicida 3523]
gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
Length = 364
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 116/223 (52%), Gaps = 18/223 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+T E F++DTLK + L+++F++ +K++H A DI ++R F + N+F
Sbjct: 41 VQIATENEIFLIDTLK-DLDFSK-LKDIFENKDIQKIIHSATNDIPIIKRFFNCEVNNIF 98
Query: 61 DTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++SL+ LL + KE Q +DWR RPL + L YA +D YL+
Sbjct: 99 DTQLAAAFLGFQTQSSLKTLLKEILDIEMEKESQFSDWRNRPLTQKQLNYAIKDVEYLIQ 158
Query: 120 IYDIMKIKLSSMPKESEN-SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+ + ++ +L + E + + L E+ K ++ EN + I +Q
Sbjct: 159 LKEYLQQQL--IKSEYQGFFEQELIEIQKTQFNSI----------ENIHTKIGNIQKFDE 206
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
Q+ A++ + +WR++IA+ + ++ N+ L +A + P
Sbjct: 207 KTQKNAIL--IAQWREMIAQEKNIPVRFIFNNKVLYALAHKNP 247
>gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469]
gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469]
Length = 379
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST +E +D L + + P L+E+ ++P K++H +D+ L +F
Sbjct: 44 VQVSTGSEIAAIDPLLID-DLTP-LKELLENPEIVKILHACSQDLEVLLEKMDCACAPVF 101
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + R + Y L+ +F V K DW RPL E L YA +D YL
Sbjct: 102 DTQVAAAFLGM-RQQVSYAGLVENFANVKLAKAESLTDWSKRPLDKEQLVYAEDDVRYLP 160
Query: 119 YIYDIMKIKLSSMPKES----ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
IY+ M KL + + S E + Y+R +YL + +
Sbjct: 161 AIYNQMVEKLIKLDRLSWLKPEMDQHTNIDQYRRD-------------PYQAYLRLK--R 205
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +QLA+ +C WR+ IA D +VL + +IEI +++PTT+ +LR++
Sbjct: 206 SGSLTRRQLAIAREVCAWREEIAAKRDVPRKWVLSDELIIEICRRVPTTSDRLRKI 261
>gi|311742288|ref|ZP_07716097.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
gi|311313916|gb|EFQ83824.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
Length = 411
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G+ +FDT A R+L L R L L+ HF G + KE+ AD
Sbjct: 104 ILHAATQDLPCLA-EIGLRPRALFDTEHAGRLLNLPRVGLATLVEHFLGRSLAKEHSAAD 162
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ L YA D L+ + D++ D L E KR + Q
Sbjct: 163 WSTRPLPEPWLVYAALDVEVLVELRDLL--------------DAELREAGKREW--AAQD 206
Query: 157 YEKELLS-------ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 209
+E LLS + G+ + LA+V L RD IA D + G +LP
Sbjct: 207 FEA-LLSFTGPPEKTERWRRTSGMHRVR-GRRTLALVRALWLTRDEIAEHRDTTPGRILP 264
Query: 210 NRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ-NAANFEVIAQK 265
+ L+EIA P A L+ L + RY+ ++N++ A+ + Q+
Sbjct: 265 DAALVEIATAAPQDMATLKGLRGLRGQGPRRYLSQWHDAVENALALPEADLPTVGQR 321
>gi|119717898|ref|YP_924863.1| 3'-5' exonuclease [Nocardioides sp. JS614]
gi|119538559|gb|ABL83176.1| 3'-5' exonuclease [Nocardioides sp. JS614]
Length = 442
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 17/218 (7%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F+VD + + P L+E + + ++H A +D+ L + G+ +FDT A R+L
Sbjct: 95 FLVDPIPFVIL--PQLQEALEG--TEWILHAATQDLPCLA-EVGLLPSRLFDTELAGRLL 149
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
R L L+ G KE+ DW RPLP+ L YA D L + D++ +L
Sbjct: 150 GYPRVGLATLVETLLGSRLAKEHSAVDWSTRPLPEPWLEYAALDVEVLAELRDLLADELE 209
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
+ K E ++ +D R + E + +++ GL + LA V L
Sbjct: 210 TAGK---------AEWARQEFDALRSFVQAERV--DAWRRTSGLHRVR-GRRALAAVRAL 257
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
E RD IA D + G +LP+ ++ A+ +PT A L
Sbjct: 258 WETRDEIAENRDVTPGRILPDSAIVAAAQAMPTDRATL 295
>gi|357404370|ref|YP_004916294.1| ribonuclease D [Methylomicrobium alcaliphilum 20Z]
gi|351717035|emb|CCE22700.1| Ribonuclease D [Methylomicrobium alcaliphilum 20Z]
Length = 386
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 117/249 (46%), Gaps = 28/249 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+T VD + L +G L EV +P KV H +D+ + G +F
Sbjct: 45 LQIATPEWVACVDPIALD-DLGA-LFEVIYNPKIIKVFHSCRQDLEIFYQLTGKIPQPIF 102
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ +L + N L+ F +N +K + DW VRPL L+YA +D YL
Sbjct: 103 DTQIAAPLLGYQENPGYAMLVSSFLNINLSKAHTRTDWTVRPLSQAQLQYAADDVIYLCQ 162
Query: 120 IYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG 175
IY M KL+ + + ES+ + E+Y E+ +N++L I G
Sbjct: 163 IYQTMLKKLAELNRLDWLESDFAMLNDPELY-------------EISPKNAWLKIRG--K 207
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL----- 230
L +QL++V L EWR+ A+ +D ++L + + E+AKQ P T ++ ++
Sbjct: 208 NKLTGKQLSIVQTLAEWREQTAQKEDRPRNWLLRDDMMFELAKQQPGTVEEMLKVHNINE 267
Query: 231 -LKSKHSYI 238
+ SKH I
Sbjct: 268 RMVSKHGKI 276
>gi|350552229|ref|ZP_08921434.1| ribonuclease D [Thiorhodospira sibirica ATCC 700588]
gi|349794882|gb|EGZ48690.1| ribonuclease D [Thiorhodospira sibirica ATCC 700588]
Length = 391
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 14/255 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T + +D L + + P+L +P KV+H A +D+ G +F
Sbjct: 45 IQVATAQQVACIDPLHIS-DLSPFL-ACLHNPAITKVLHAASQDLELFYCLDGRVPAPIF 102
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A +L ++ L+ GV +K+ DW RPL LRYA +D YL
Sbjct: 103 DTQLAGALLGYGDQAGYAKLVSAMLGVELDKDMTRTDWSQRPLSAAQLRYAEDDVRYLAQ 162
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +M +LS +T E + + E ++ I G Q L
Sbjct: 163 LYPLMHTQLS---------ETRRLEWLASDFAALSEARHYESQPAKAWKRIKGHQT--LR 211
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
QLAV+A L WR+ A + +++ + L+++A+Q P TA KL R+ +
Sbjct: 212 GPQLAVLASLASWRESEAMRANRPRRWIIADDPLLDMARQQPNTAEKLARIRGVNEGSLR 271
Query: 240 RYMGPVLSIIKNSMQ 254
RY G +L+ I Q
Sbjct: 272 RYEGALLNAIAQGKQ 286
>gi|338532921|ref|YP_004666255.1| putative ribonuclease D [Myxococcus fulvus HW-1]
gi|337259017|gb|AEI65177.1| putative ribonuclease D [Myxococcus fulvus HW-1]
Length = 378
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 17/269 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E F++DTL+ V G L + DP + K H A D+ +L + G+ + +F
Sbjct: 38 LQLATDDEVFLLDTLQPGVVPG-MLAPLMADPARTKFFHAAQGDLQFLA-EVGVRVQGLF 95
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A+ +L + L + GV KE+Q +D+ +RPLP M Y D YL
Sbjct: 96 DTHRAATLLGWPKVGLADIARERLGVELPKEHQQSDFSIRPLPPGMREYIANDVRYL--- 152
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+L +++ L EV +C + + + + + L AGLN
Sbjct: 153 -----CELGRQVRDACREADILEEVLLDCARLCDEAAARPDVGAD---YKPKLPRAGLNP 204
Query: 181 QQL----AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 236
QL A+ L R A ++ G +L N + +IA +LPT +L R+ + S
Sbjct: 205 VQLTLAHAIAQALHRKRLEWAEKENVPMGRMLSNMAIGDIAVKLPTNPKELARMAGVRGS 264
Query: 237 YIERYMGPVLSIIKNSMQNAANFEVIAQK 265
+I + +L++++ ++ + E+ ++
Sbjct: 265 FIRAHGEDLLAVVRELLEKSRRGELAPER 293
>gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens]
Length = 549
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 113/274 (41%), Gaps = 52/274 (18%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADR-DIVWLQRDFGIYLCNM 59
+QIST D+VVD L LR ++ L F DP +KV H DI LQRDFGI++ N+
Sbjct: 248 VQISTADVDYVVDALALRFELRA-LAPAFADPNIRKVFHACQGVDIPRLQRDFGIFVVNV 306
Query: 60 FDTGQASRVLKLERNSLEYL--LHHFCGV----------NANKEYQNADWRVRPLPDEML 107
FDT +A+R + L L+ GV + + YQN DWR RPL L
Sbjct: 307 FDTQEAARCAARVLGAPLGLVALYASAGVISTARRDELESLKRAYQNCDWRSRPLSPAQL 366
Query: 108 RYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP----------------LTEVYKRSYD 151
YA D +L+ + + +L + P D
Sbjct: 367 EYAVCDARHLVDLEAYLNRELRHFDPLRDYGLPPGGAARDAPRPPPPPGPREAAGDEEAD 426
Query: 152 VCRQLYEKELLSENSYLHIY------GLQGAGLNAQQLAVVA--------GLCEWRDVIA 197
+ Y K S+ + L ++ LQ A +Q A +A L WRD A
Sbjct: 427 MVASAYCK---SQRATLCLWRAPRSPRLQAA--RDKQFAALARDAAPRFSALVAWRDAEA 481
Query: 198 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 231
R DE V P+ L AK+ PTT LR LL
Sbjct: 482 RRLDEGPHAVCPSAALAAFAKRWPTT---LRGLL 512
>gi|146173426|ref|XP_001018834.2| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|146144882|gb|EAR98589.2| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 634
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 115/236 (48%), Gaps = 21/236 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
++IST +D+++D L LR ++ L+E+F D K+ I WL RDFGI N+
Sbjct: 133 LEISTIDQDYIIDCLSLRNEIHR-LKEIFLDKQIVKITLDLQEKINWLYRDFGI--LNIV 189
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNAN----KEYQNADWRVRPLPDEMLRYAREDTHY 116
++ S LK E N L ++ + CG N K QN D+R RPL + Y R +++
Sbjct: 190 NSIDLSLYLK-ELN-LPSIISYLCGTLLNYPFQKILQNFDYRKRPLSLNEINYLRAFSYF 247
Query: 117 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRS-YDVCRQLYEKE-LLSEN---SYLHIY 171
L I I+ + S+ K + L E++ +S C L + E LL EN + ++
Sbjct: 248 PLRILSILTNNILSIEK------SKLEELFNKSQLASCLSLKQLENLLQENLIEKHFEMF 301
Query: 172 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ N QQ + + +WR A+ +DES Y+ P + + PT++ ++
Sbjct: 302 CI-DRNYNEQQQYFLRKILKWRIQRAKLEDESVEYIFPACIIEKFISVYPTSSQQV 356
>gi|297626438|ref|YP_003688201.1| ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922203|emb|CBL56771.1| Ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 445
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 18/223 (8%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
LRE + + ++H A +D+ L + G+Y +FDT A R+L R SL ++
Sbjct: 108 LREAIA--SAEWIIHAATQDLPCLV-EIGLYPSRLFDTELAGRLLGFPRVSLGTMIEQHF 164
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
GV+ KE+ ADW RPLP + + YA D L+ + +++ +L + K+ E +D E
Sbjct: 165 GVHLLKEHSAADWSRRPLPPDWIAYAALDVELLIELRNLVADELVAAGKK-EWAD----E 219
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 204
+ DV R ++ + + H G + + LA+V L E RD IAR D++
Sbjct: 220 EFAHLVDVYRHPQQR---PGDPWRHTSGSHHVR-SRRGLALVRALWEQRDEIARELDKAP 275
Query: 205 GYVLPNRTLIEIAKQLPT------TAAKLRRLLKSKHSYIERY 241
G ++P++ + E+A ++ TA + +++ + +Y +RY
Sbjct: 276 GKIVPDKAISELASEVTKDSEKMPTARDMNKIMGFRRTYAKRY 318
>gi|389581646|ref|ZP_10171673.1| ribonuclease D [Desulfobacter postgatei 2ac9]
gi|389403281|gb|EIM65503.1| ribonuclease D [Desulfobacter postgatei 2ac9]
Length = 404
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 16/204 (7%)
Query: 23 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 82
P+ R + ++P KV HG+D D+ L R+ + + N+FDT A R L ++ L LL
Sbjct: 93 PFSR-ILENPEIIKVFHGSDFDVRSLDRELSVEIENLFDTEIACRFLNIKERGLGALLKS 151
Query: 83 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES-ENSDTP 141
F ++ +K+YQ DW RPL +EM+ Y+ D L+ ++D++K +L + + + +
Sbjct: 152 FFDIDVDKKYQKVDWSKRPLKEEMIAYSVGDVATLVDLHDLLKERLEKIGRLAWAEEEFE 211
Query: 142 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARAD 200
L K + R L+ + +GAG L+ + LAV+ L E R A
Sbjct: 212 LQARVKYESNHSRPLFRR-------------FKGAGKLDNRSLAVLEHLLEVRLSEAEKK 258
Query: 201 DESTGYVLPNRTLIEIAKQLPTTA 224
D ++ N++++ + + PT+
Sbjct: 259 DLPPFKIMSNQSILTMVQHRPTSV 282
>gi|344943543|ref|ZP_08782830.1| ribonuclease D [Methylobacter tundripaludum SV96]
gi|344260830|gb|EGW21102.1| ribonuclease D [Methylobacter tundripaludum SV96]
Length = 389
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 12/226 (5%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHF 83
L E P+ KV H +D+ + G +FDT A+ +L + N L+
Sbjct: 68 LFEAIYSPSIVKVFHSCRQDLEIFYQLTGKLPEPLFDTQIAAPLLGFQENPGYAMLVSSL 127
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 143
VN NK + ADW RPL D ++YA +D YL IY +M KL+ + + +E +
Sbjct: 128 LNVNLNKAHTRADWSKRPLIDAEIQYAADDVIYLCKIYQMMLQKLAELGR-AEWLERDFA 186
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
E+ LYE + E ++L I G L +QL++V L EWR+ A+ +D
Sbjct: 187 ELANPD------LYEVK--PEKAWLKIKG--KNKLTGRQLSIVQALAEWREKAAQTEDRP 236
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 249
++L + L ++AK P T ++L + + RY + +I
Sbjct: 237 KSWLLRDEMLFDLAKLQPETVSELANVRAINERTVNRYGAELCQLI 282
>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
Length = 381
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 11/225 (4%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVN 87
+F + +KV HGAD DI L RDFGI + N+FDT A ++L L L GV
Sbjct: 74 LFANAAIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQLLGEREFGLAAQLRKRFGVE 133
Query: 88 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYK 147
+K+YQ ADW RPL M+ YA +DT L+ +Y + +L + +
Sbjct: 134 LDKQYQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELEEKGRRGWVEE-------- 185
Query: 148 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 207
++ ++ E E +L G + ++ + LAV+ L +RD AR D V
Sbjct: 186 -ECELLSRVRVAERGDEPFFLRFKG--ASRMDGRTLAVLEELLLFRDGRARQFDVPPFKV 242
Query: 208 LPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
L T+ E+A++ P +L+ + RY +L ++
Sbjct: 243 LGTDTVRELAERRPRLPEELQGITGLTDKVAARYGEGILRAVERG 287
>gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799]
gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799]
Length = 374
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 16/241 (6%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 70
++D L+++ +GP L ++ D KV+H A D+ G+ +FDT A +L
Sbjct: 58 LIDPLEIQ-DLGP-LWQLIADKNVVKVLHSASEDLEIFAYRGGVIPQPLFDTQVAGVLLN 115
Query: 71 LERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 128
L ++ Y L+HH+ G+ +K DW RPL ++ L YA D +YLL +Y +M+ +
Sbjct: 116 LG-GAMGYGKLIHHYLGLELDKGEARTDWLKRPLSEKQLTYAAADVYYLLQVYRMMRPAI 174
Query: 129 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 188
M + L +++ CR + + +YL + L +QLAV+
Sbjct: 175 EEMGR--------LDWLWQEGERACRGRLKPD-DPNKAYLKVKN--AWQLKPKQLAVLKA 223
Query: 189 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 248
L WR +A D + +V+ + L+ +A++ P + A L + I+RY +L +
Sbjct: 224 LAAWRLGVAEQKDLALSFVVKDAALLNLARRAPRSMAYLANMDCLHEREIQRYGKTLLRV 283
Query: 249 I 249
I
Sbjct: 284 I 284
>gi|269794953|ref|YP_003314408.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
gi|269097138|gb|ACZ21574.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
Length = 437
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + +FDT A+R+L +ER L ++ G+ KE+ D
Sbjct: 115 VLHAASQDLPGLAEQH-LVPSAVFDTELAARILGMERVGLAAVVAEVLGLGLAKEHSAVD 173
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD L YA D L+ + D M +L + K TE ++ ++ R L
Sbjct: 174 WSTRPLPDAWLLYAALDVEVLVELRDRMAERLEAAGK---------TEWARQEFEAVR-L 223
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + G A+QLAVV L RD AR D + G VLP+R ++
Sbjct: 224 TGPAAPRVEPWRRVSGSHTL-RQARQLAVVRELWLTRDENARKRDIAPGRVLPDRAIVAA 282
Query: 217 AKQLPTTAAKLRRL 230
A+ +P T L +L
Sbjct: 283 AQAMPRTVPALTKL 296
>gi|429730644|ref|ZP_19265290.1| putative ribonuclease D [Corynebacterium durum F0235]
gi|429147082|gb|EKX90112.1| putative ribonuclease D [Corynebacterium durum F0235]
Length = 397
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 14/213 (6%)
Query: 18 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 77
R ++G L+ + T V+H A D+ LQ +FG + +FDT A R+ +R +L
Sbjct: 73 RTELGEILKPLLNSTTW--VLHAAVSDLPSLQ-NFGWFPTRLFDTEVAGRLAGFDRVNLA 129
Query: 78 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 137
++ G++ K +DW RP+P L YA D LL + D M L++ K
Sbjct: 130 AMVEKVLGLHLAKGLAQSDWSRRPIPAAWLTYAALDVEVLLELADSMAAILTADGK---- 185
Query: 138 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 197
T ++ ++ R L ++ +E+++ + G+ QLAV L R+ IA
Sbjct: 186 -----TAWAEQEFEHIR-LQARQPQAESTWQDMKGI-SVLTRPPQLAVAQALWTTREAIA 238
Query: 198 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
D S G VL NR L+++A+ LPT+ +L ++
Sbjct: 239 LRKDLSPGRVLRNRVLLDVARTLPTSPVELAKI 271
>gi|441508350|ref|ZP_20990274.1| putative ribonuclease [Gordonia aichiensis NBRC 108223]
gi|441447378|dbj|GAC48235.1| putative ribonuclease [Gordonia aichiensis NBRC 108223]
Length = 432
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + + P + E P + V+H AD+D+ L R+ G + +FDT A R+L
Sbjct: 86 FLLDPISEPEALAPVI-EALDGP--EWVLHAADQDLPCL-RELGFHCETVFDTELAGRLL 141
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+ +L ++ G+ K + ADW RPLPD+ L YA D L+ + D ++ L
Sbjct: 142 GEPKVNLAAMVATHLGLGLQKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAVQAALI 201
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
K+ E + V R R + + + +H N + LA V L
Sbjct: 202 EAGKD-EWARQEFQHVLDRPAPPPR----IDRWRKTANVHTVK------NGRSLAAVREL 250
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
C R+ +A+ D + G +LP+ ++ A +PT+ A+L RL
Sbjct: 251 CSAREELAQRRDVAPGRILPDSAIVTAANAMPTSVAELTRL 291
>gi|397603830|gb|EJK58534.1| hypothetical protein THAOC_21330 [Thalassiosira oceanica]
Length = 452
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 106 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 165
M YA DT YLL IYD ++++L + + D + V RS VC Y+KE +
Sbjct: 1 MRTYALSDTRYLLDIYDQLRLELDT----HSSPDVSIEVVLDRSKQVCLVRYDKEPFQPS 56
Query: 166 SYLHIY--GLQGAG----LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 219
+Y I G +G L +Q A + L +WRD AR +DES +V PN +L+ IA
Sbjct: 57 AYKSIINKGRRGGKVVTQLTQKQDASLKALYDWRDATARKEDESIFFVCPNASLVRIASN 116
Query: 220 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 256
P T L+RLL + R +L + + NA
Sbjct: 117 HPKTVNALQRLLNPTPPLVMRRSQEILDALSSLAANA 153
>gi|392943949|ref|ZP_10309591.1| ribonuclease D [Frankia sp. QA3]
gi|392287243|gb|EIV93267.1| ribonuclease D [Frankia sp. QA3]
Length = 520
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 98 VLHAASQDLPCLA-ELGLRPSLLFDTELAGRLLGYERVGLGMMVERVLGYGLEKGHSAAD 156
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +
Sbjct: 157 WSTRPLPEPWLRYAALDVELLVELRDALEAELIEQDK---------IEFARQEFAAIAAA 207
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+E +E + G+ A + +QLA V + RD +ARA D + G VLP+ +++
Sbjct: 208 PPREPRAE-PWRRTSGIHRA-RSRRQLAAVRAMWTARDRMARARDVAPGRVLPDSAIMDA 265
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
P A L RL I R L ++++
Sbjct: 266 VLNAPADTAALIRLPIFSGPRIRRTASTWLDALRSA 301
>gi|257068547|ref|YP_003154802.1| ribonuclease D [Brachybacterium faecium DSM 4810]
gi|256559365|gb|ACU85212.1| ribonuclease D [Brachybacterium faecium DSM 4810]
Length = 399
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 24/207 (11%)
Query: 34 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
++ V+H A +D+ L + G+ +FDT A+R+L +ER L ++ G+ KE+
Sbjct: 91 REWVLHAAGQDLPSLA-EIGLEPGGLFDTELAARLLGMERVGLGAVVEDTLGLRLAKEHS 149
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 153
ADW RPLP+ L YA D L+ + D+++ +L KE D
Sbjct: 150 AADWSRRPLPEGWLTYAALDVEVLVEVRDVLRERLREACKE----------------DWA 193
Query: 154 RQLYEKELLSEN------SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 207
RQ +E E + E+ S+ ++GL G +QLA + + RD IA +D S V
Sbjct: 194 RQEFEHERVREHGPTRSSSWRGLHGLGGLR-TPRQLAAAREMWQRRDEIAAGEDLSPHRV 252
Query: 208 LPNRTLIEIAKQLPTTAAKLRRLLKSK 234
+ +R L+ AK+ P R L +K
Sbjct: 253 IKDRDLVAGAKEAPRGREAFDRALPAK 279
>gi|88856896|ref|ZP_01131548.1| ribonuclease [marine actinobacterium PHSC20C1]
gi|88813864|gb|EAR23734.1| ribonuclease [marine actinobacterium PHSC20C1]
Length = 418
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 16/216 (7%)
Query: 34 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
++ ++H A +D+ L R+ G+Y +FDT +R+ L R L ++ HF G++ KE+
Sbjct: 96 EEWILHAATQDLTCL-REVGLYPTRLFDTELGARIAGLPRVGLGTVVEHFLGIHLAKEHS 154
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 153
+ADW RPLP L YA D L+ + + + L S K + + V R +
Sbjct: 155 SADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADKH-DIAQQEFDSVLARDLIIV 213
Query: 154 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
R + L ++ ++G + LAV L RD A+ D + G ++P+ L
Sbjct: 214 RAEPWRRLSG------VHSVRG----GKNLAVARELWVARDAYAQEVDTAPGRLVPDSAL 263
Query: 214 IEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 245
+ A+ LP T +L L ++ + ++R+ +
Sbjct: 264 VAAARVLPETKRQLSALKEFSGRASRTQLDRWWAAI 299
>gi|375101467|ref|ZP_09747730.1| ribonuclease D [Saccharomonospora cyanea NA-134]
gi|374662199|gb|EHR62077.1| ribonuclease D [Saccharomonospora cyanea NA-134]
Length = 413
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + LR + P L EV KD + V+H A +D+ L + G++ +FDT A R+
Sbjct: 79 FLIDPIPLRDDLAP-LAEVMKD--AEWVLHAASQDLPCLA-ELGLHPPALFDTELAGRLA 134
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+R +L L+ G K + ADW RPLP + L YA D L+ + D ++ +L+
Sbjct: 135 GYQRVALGTLVEELLGYRLEKGHSAADWSRRPLPVDWLNYAALDVELLVPLRDKLEAELA 194
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
+ K E + ++ R SE + G+ A+ LA V L
Sbjct: 195 ASGK---------LEWALQEFEAVRTAEPPGPRSE-PWRRTSGIHKI-RTARGLAAVRAL 243
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
E RD +AR D + G +LP+ +I P + A L++L
Sbjct: 244 WEARDELARKRDRAPGRILPDSAIINAVLADPRSPADLQKL 284
>gi|453382611|dbj|GAC82906.1| ribonuclease D [Gordonia paraffinivorans NBRC 108238]
Length = 429
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 114/255 (44%), Gaps = 16/255 (6%)
Query: 1 MQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R F++D + + P + E + P + V+H AD+D+ L R+ G +
Sbjct: 67 IQIKRRGAGSFLLDPIADPDALAPVI-EALRGP--EWVLHAADQDLPCL-RELGFVCVEL 122
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+L L + +L ++ F G+ K + ADW RPLPD+ L YA D L+
Sbjct: 123 YDTELAGRLLGLSKVNLAAMVAQFLGLGLVKGHGAADWSRRPLPDDWLNYAALDVEVLVE 182
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D M L K+ + + R R + + S +H +
Sbjct: 183 LRDAMDAALVEAGKDRWAREE-FAYILSRPPAPPR----TDRWRKTSNIHTVK------S 231
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
A+ LA V L R+ +A D + G VLP+ ++ A P T+A+L RL
Sbjct: 232 ARALAAVRELWTAREQLAERRDIAPGRVLPDAAIVNAATADPKTSAELTRLPVFGGPRQR 291
Query: 240 RYMGPVLSIIKNSMQ 254
R G L+ +K + +
Sbjct: 292 RQAGIWLNALKRARE 306
>gi|358460925|ref|ZP_09171099.1| 3'-5' exonuclease [Frankia sp. CN3]
gi|357074601|gb|EHI84090.1| 3'-5' exonuclease [Frankia sp. CN3]
Length = 438
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 98 VLHAASQDLPCLA-ELGLRPTRLFDTELAGRLLGYERVGLGMMVERVLGFGLEKGHSAAD 156
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D + +L+ E+ + L E + R+
Sbjct: 157 WSTRPLPEPWLRYAALDVELLVELRDALTAELT----ETGKLEFALQEFAAIAAAPPRE- 211
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E S +H + +QLA V + RD IAR D + G VLP+ +I+
Sbjct: 212 PRAEPWRRTSGIH------RARSRRQLAAVRSMWTARDKIARVRDIAPGRVLPDSAIIDA 265
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
P AA+L +L + R G ++ + +
Sbjct: 266 VLSAPADAAELVKLPVFSGPRLRRSAGVWMTALTQA 301
>gi|288917119|ref|ZP_06411489.1| 3'-5' exonuclease [Frankia sp. EUN1f]
gi|288351488|gb|EFC85695.1| 3'-5' exonuclease [Frankia sp. EUN1f]
Length = 525
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 26/201 (12%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G++ ++FDT A R+L ER L ++ G K + AD
Sbjct: 133 VLHAASQDLPCLA-ELGLHPTSLFDTELAGRLLGYERVGLGAMVERVLGFALEKGHSAAD 191
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L V + D RQ
Sbjct: 192 WSTRPLPEPWLRYAALDVELLVELRDRLEAEL----------------VERDKIDFARQE 235
Query: 157 YE-------KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 209
+ +E +E + G+ A +QLA V + + RD +AR D + G VLP
Sbjct: 236 FAAIAAAPPREPRAE-PWRRTSGIHRARTR-RQLAAVRAMWQARDKVARTRDLAPGRVLP 293
Query: 210 NRTLIEIAKQLPTTAAKLRRL 230
+ +++ + P A L RL
Sbjct: 294 DGAIMDAVLKAPADIAALTRL 314
>gi|111221533|ref|YP_712327.1| ribonuclease D [Frankia alni ACN14a]
gi|111149065|emb|CAJ60747.1| Putative ribonuclease D (partial match) [Frankia alni ACN14a]
Length = 545
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 12/216 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 117 VLHAASQDLPCLA-ELGLRPALLFDTELAGRLLGYERVGLGMMVERVLGYGLEKGHSAAD 175
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +
Sbjct: 176 WSTRPLPEPWLRYAALDVELLVELRDALEAELIEQDK---------LEFARQEFAAIVAA 226
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+E +E + G+ A + +QLA V + RD +AR D + G VLP+ +++
Sbjct: 227 PPREPRAE-PWRRTSGIHRA-RSRRQLAAVRAMWTARDRMARTRDVAPGRVLPDSAIMDA 284
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
P A L RL I R L ++++
Sbjct: 285 VLNAPADTAALIRLPIFSGPRIRRTASTWLDALRSA 320
>gi|312196135|ref|YP_004016196.1| 3'-5' exonuclease [Frankia sp. EuI1c]
gi|311227471|gb|ADP80326.1| 3'-5' exonuclease [Frankia sp. EuI1c]
Length = 440
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 98 VLHAASQDLPCLA-ELGLRPTTLFDTELAGRLLGYERVGLGMMVERVLGFGLEKGHSAAD 156
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D + ++L+ K + + +
Sbjct: 157 WSTRPLPEPWLRYAALDVELLVELRDALAVELAETGK---------LDFAHQEFAAIVAA 207
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+E +E + G+ A + +QLA V + RD IAR D + G VLP+ +I+
Sbjct: 208 PPREPRAE-PWRRTSGIHRA-RSRRQLAAVRAMWSARDKIARTRDIAPGRVLPDSAIIDA 265
Query: 217 AKQLPTTAAKLRRL 230
P A +L +L
Sbjct: 266 VLNAPADATELVKL 279
>gi|386775372|ref|ZP_10097750.1| ribonuclease D [Brachybacterium paraconglomeratum LC44]
Length = 452
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 12/209 (5%)
Query: 34 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
++ V+H A +D+ L + G++ +FDT A+R+L +ER L ++ G+ KE+
Sbjct: 144 REWVLHAAGQDLPSLA-ELGLHPGGLFDTELAARLLGMERVGLGAVVEDTLGLRLAKEHS 202
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 153
ADW RPLP+ L YA D L+ + D++ +L +E+ +D E +++
Sbjct: 203 AADWSKRPLPESWLVYAALDVEVLVQVRDVLAQRL----EEAGKADWAAREF---AHERT 255
Query: 154 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
R E +S+ ++GL GA +QLA + RD +A D S V+ +R L
Sbjct: 256 R---EHGPTRSSSWRGLHGL-GALRTVRQLAAAREMWTRRDELASEADLSPHRVIKDRDL 311
Query: 214 IEIAKQLPTTAAKLRRLLKSKHSYIERYM 242
+ AK+ P R L SK + +R+
Sbjct: 312 VAAAKEAPRGREAFDRALPSKMRHKDRWW 340
>gi|407647033|ref|YP_006810792.1| ribonuclease D [Nocardia brasiliensis ATCC 700358]
gi|407309917|gb|AFU03818.1| ribonuclease D [Nocardia brasiliensis ATCC 700358]
Length = 417
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 101/227 (44%), Gaps = 27/227 (11%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + + + P L D + V+H AD+D+ L + G+ +FDT R+
Sbjct: 75 FLIDPIPVTDALAP-LAAAIND--LEWVLHSADQDLPGLA-ELGLRPQRLFDTELGGRLA 130
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
ER L ++ + G K + ADW RPLPDE L YA D LL + D + +L
Sbjct: 131 GFERVGLAAMVENLLGHALRKGHGAADWSTRPLPDEWLNYAALDVELLLELRDAVAAELD 190
Query: 130 SMPK------ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 183
+ K E E+ T TE D R+ S +H A+QL
Sbjct: 191 AQGKSDWAAQEFEHVRT--TEPPAPKADRWRR---------TSGIHTL------RRARQL 233
Query: 184 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
AVV L RD +ARA D + +LP+ +I P T A+LR L
Sbjct: 234 AVVRELWTTRDGLARARDVAPARILPDAAIIAAVTADPKTIAQLRGL 280
>gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B]
gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B]
Length = 372
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 40/232 (17%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+T + +++D L L GP L E+ + T KV+H A D+ Q G+ +F
Sbjct: 44 VQIATADQVWLIDPLPL-TDTGP-LAELLQKSTLTKVLHSAGEDLEVFQAWLGVLPSPLF 101
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT +A+ +L S L+ C V+ +K+ N+DW VRPL RYA +D YL+
Sbjct: 102 DTQKAAALLGYGFGLSYAKLVEAVCQVSLDKDETNSDWLVRPLTSAQCRYAAQDVTYLVD 161
Query: 120 IYDIM------KIKLSSMPKESENSDT----PLTEVYKRSYDVCRQLYEKELLSENSYLH 169
+Y + + +L + +E E PL + ++ ++
Sbjct: 162 VYSRLLGDAGTQGRLEWILEEGEGVSVGGRGPLAK-FRNAWK------------------ 202
Query: 170 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
L + LAV+ GL +WR+ AR D ++L ++ + EI + LP
Sbjct: 203 --------LQPEALAVLYGLLDWREQQARERDRPRNWILHDKVINEIVRALP 246
>gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 700
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 76/144 (52%), Gaps = 18/144 (12%)
Query: 1 MQIST-RTEDFVVDTLKLRV--QVGPYLREVFKDPTKKKVMHG-ADRDIVWLQRDFGIYL 56
+Q+ST +V+D L V +VG L +F DP KV H D+ L RDFGI++
Sbjct: 277 LQLSTDHGMAYVIDPLAPGVFEEVGG-LAPIFADPDIVKVGHSIGGLDVRSLHRDFGIFV 335
Query: 57 CNMFDTGQASRVLKLERNSLEYLLHHFCGV-------NANKEYQNADWRVRPLPDEMLRY 109
N FDT +A++VL LE + L + H+ G+ + EYQ DWR RPL M++Y
Sbjct: 336 INAFDTYEAAKVLCLESHGLAAVCEHY-GMKYTDLYKSLKNEYQTCDWRARPLTGPMIQY 394
Query: 110 AREDTHYL-----LYIYDIMKIKL 128
R D H+L L I D+ K L
Sbjct: 395 GRFDVHFLIELRMLMIRDLTKTYL 418
>gi|404421224|ref|ZP_11002947.1| ribonuclease D [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403659237|gb|EJZ13893.1| ribonuclease D [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 420
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 33 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 92
T + V+H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLS-EIGLRPGKLYDTELAGRLAGFERVNLAAMVQRLLGLQLMKGH 166
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYD 151
ADW RPLP E L YA D LL ++ ++++ +E +D E Y R+Y
Sbjct: 167 GAADWSKRPLPPEWLNYAALDVEVLLE----LRHAVAAVLEEQGKTDWAAQEFEYLRTY- 221
Query: 152 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 211
Q ++ S +H N Q LA V L RD IAR D + G +LP+
Sbjct: 222 -VAQPTRRDRWRRTSGIHKV------RNPQALAAVRELWTTRDTIARGRDIAPGRILPDS 274
Query: 212 TLIEIAKQLPTTAAKL 227
+I A P T +L
Sbjct: 275 AIINAATTDPKTVEEL 290
>gi|378549176|ref|ZP_09824392.1| hypothetical protein CCH26_03785 [Citricoccus sp. CH26A]
Length = 385
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 34/202 (16%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G++ +FDT A R+L L R L +L GV KE+ AD
Sbjct: 70 ILHAATQDLPCLS-ELGMWPDRLFDTELAGRILGLPRVGLASVLEQLLGVTLAKEHSAAD 128
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIM------KIKLSSMPKESENSDT-----PLTEV 145
W RPLP++ LRYA D L+ + M KL +E E T P T+
Sbjct: 129 WSKRPLPEDWLRYAALDVELLVELRAAMVGMLEASGKLDWAEEEFEAIRTTPLPGPRTDP 188
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++R+ S +H QQLAVV L E R+ +AR D + G
Sbjct: 189 WRRT----------------SGMHKLR------RPQQLAVVRELWEAREALARNRDTAPG 226
Query: 206 YVLPNRTLIEIAKQLPTTAAKL 227
++P+ ++ A P+T L
Sbjct: 227 RLIPDSAIVSAAAAQPSTVPAL 248
>gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626]
gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626]
Length = 376
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 15/251 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ST E +D L + + P +R +F+D KV+H +D+ L +F
Sbjct: 41 VQVSTGEEIAAIDPLSID-DLSPLVR-LFEDQKIVKVIHACSQDLEVLLYGMHCACAPVF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + ++ S ++ H+ GV+ K DW RPL E L YA +D YL
Sbjct: 99 DTQLAAAFLGMRQQASYASVVEHYMGVHLPKTESLTDWSRRPLDPEQLVYAEDDVRYLPD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
IY M +L M P Y + R + +YLH+ + L
Sbjct: 159 IYRCMYERL--MKTNRLGWLMPEMNAYTAPENFKRD-------PKEAYLHLK--RSNSLT 207
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+Q+A+ +C WR+ A + +++ + TL+EI K+ P T+ +L+R ++ S +
Sbjct: 208 RRQMALAREICAWREERAAQHNIPRKWIISDETLVEICKRSPATSERLKR-IRGTESLSQ 266
Query: 240 RYMGPVLSIIK 250
+ +L+ IK
Sbjct: 267 ESVASILAAIK 277
>gi|347755007|ref|YP_004862571.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
gi|347587525|gb|AEP12055.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
Length = 405
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 21/234 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ R VD RV + P L + P +K++H +DIV L+R+ ++F
Sbjct: 41 VQLGLRDRCVAVD--PFRVNLTP-LAPLLTHPGIRKIVHAGGQDIVLLRRETDAIPVSVF 97
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L E L F V+ +K+ Q DW RPL E + YA D YL
Sbjct: 98 DTQIAAAFLGYGEATGYAALAQRFAKVSLSKKQQFTDWTRRPLLPEQIEYALNDVRYLFP 157
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS---YLHIYGLQGA 176
+YD + +L+ + +D L D C + + + YL I L
Sbjct: 158 VYDGLLEQLA----QHGRTDWVL--------DACADAVAQAVRVRETGQEYLKIGKL--G 203
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
++ ++LAV+ L +WR+ AR+ + G +L + L +IA LP T LR++
Sbjct: 204 SMSRRELAVLRELYQWREATARSRNRPVGTILHDDVLRQIAYTLPRTETALRQM 257
>gi|379057275|ref|ZP_09847801.1| 3'-5' exonuclease [Serinicoccus profundi MCCC 1A05965]
Length = 421
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +DI L + G+ +FDT +R+ L R L +L ++ GV KE+ D
Sbjct: 100 VLHAATQDIPCLA-ELGLRPRALFDTELGARLAGLPRVGLSAVLEYYLGVTLAKEHSAVD 158
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK--ESENSDTPLTEVYKRSYDVCR 154
W RPLP+ LRYA D L+ + D M+ L K +E L E +
Sbjct: 159 WSTRPLPEPWLRYAALDVELLVELRDRMERDLREQGKLDWAEQEFAALCEFTGPAGS--- 215
Query: 155 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 214
E E + +H + LA + L + RD IA+ D G VLP+ TL+
Sbjct: 216 --EEPEAWRRTTGVHRLR------KRRSLAALRELWQTRDTIAQERDVPPGRVLPDGTLL 267
Query: 215 EIAKQLPTTAAKL 227
++A+++P AA L
Sbjct: 268 DLAQRMPRQAAAL 280
>gi|149919604|ref|ZP_01908083.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
gi|149819547|gb|EDM78975.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
Length = 386
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 28/267 (10%)
Query: 1 MQISTRTEDFVVDTLKL-------RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFG 53
+Q++ F+VDTL L R + L E P+ + +HG + D+ L+RDFG
Sbjct: 48 LQLNVAGALFLVDTLALAGDSGEPRAEALAALAEPLASPSLRLWIHGGEYDVACLKRDFG 107
Query: 54 IYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 113
I L +FDT QA+ L R ++ C K ++ DW RP+ + LRYA +D
Sbjct: 108 IALGGLFDTQQAASFLGWSRTGYAAVVEAVCEQKLPKAHKQHDWGRRPIDAKALRYALDD 167
Query: 114 THYLLYIYDIMKIKLSSMPKESE----NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 169
+L + ++ ++ + + E N+ ++ ++D R
Sbjct: 168 VVHLPRVGRELEARIGAADLDEELAIANASVAAAPAHRSAFDPSR--------------- 212
Query: 170 IYGLQGA-GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
++ L+GA L A++L V+A + WR+ R D G ++ N L+ +A++ P AA L+
Sbjct: 213 MWKLKGARDLPAERLPVLAAIYRWREDKGRELDHPPGRLIANEPLVHLARRAPRDAAALK 272
Query: 229 RLLKSKHSYIERYMGPVLSIIKNSMQN 255
R ++ + +I+ + +L+ I ++
Sbjct: 273 R-MRLRRGFIQSHGEGLLAAIAAGLEG 298
>gi|337755515|ref|YP_004648026.1| ribonuclease D [Francisella sp. TX077308]
gi|336447120|gb|AEI36426.1| Ribonuclease D [Francisella sp. TX077308]
Length = 364
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 16/222 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+T E F++DTL+ + L+++F+D +K++H A DI ++R F + N+F
Sbjct: 41 VQIATENEIFLIDTLE-DLDFSK-LKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIF 98
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + SL+ LL + KE Q +DWR RPL + YA +D +L+
Sbjct: 99 DTQLAASFLGTQSQISLKALLKDILDIEMEKESQFSDWRKRPLSQKQFDYALKDVEHLIE 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
I ++ KL+ + + L E+ K ++ ++ K I +Q
Sbjct: 159 IKYHLESKLNQTDYKQYFHE-ELLEIQKTEFNTIDNIHNK----------IGNIQKFNEK 207
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
Q+ A++ +WR+ IA+ + ++ N+ L IA + P
Sbjct: 208 TQKNAILVA--QWRESIAQQKNIPVRFIFDNKILYAIAHKNP 247
>gi|158316934|ref|YP_001509442.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
gi|158112339|gb|ABW14536.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
Length = 499
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 137 VLHAASQDLPCLA-ELGLRPKTLFDTELAGRLLGYERVGLGAMVERVLGFGLEKGHSAAD 195
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L + K + ++ +D
Sbjct: 196 WSNRPLPEPWLRYAALDVELLVELRDQLESELVAQNKMA---------FARQEFDAIAAA 246
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+E +E + G+ A + +QLA V + + RD +AR D + G VLP+ +++
Sbjct: 247 PPREPRAE-PWRRTSGIHRA-RSRRQLAAVRSMWQARDRVARTRDIAPGRVLPDIAIMDA 304
Query: 217 AKQLPTTAAKLRRL 230
+ P AA L RL
Sbjct: 305 VLKAPEDAAALTRL 318
>gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia]
Length = 733
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 1 MQISTRTEDFVVDTLKLRV---QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 57
+QI + +++D +++ V ++ +++F+D KV + D++WL+RDF I +
Sbjct: 79 VQIKDDEDVYIIDVIEIGVDNQKLINVFKQIFEDDKIIKVFYAGSTDVLWLKRDFQITIQ 138
Query: 58 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY----QNADWRVRPLPDEMLRYARED 113
N FD + + KL + SL +L +C +K Y Q +DW RPL E L YA D
Sbjct: 139 NFFDIKEVADECKLSKISLIFLWKQYCDHQVSKSYKTNMQTSDWAERPLTQEQLIYAAYD 198
Query: 114 THYLLYI 120
+YL Y+
Sbjct: 199 CYYLPYL 205
>gi|433647366|ref|YP_007292368.1| ribonuclease D [Mycobacterium smegmatis JS623]
gi|433297143|gb|AGB22963.1| ribonuclease D [Mycobacterium smegmatis JS623]
Length = 422
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 12/198 (6%)
Query: 33 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 92
T + V+H AD+D+ L + GI ++DT A R+ +R +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLA-EIGIRPPKLYDTELAGRLAGYDRVNLAAMVQRLLGLQLMKGH 166
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 152
ADW RPLPDE L YA D LL + D + L+ K T+ + ++
Sbjct: 167 GAADWSKRPLPDEWLNYAALDVEVLLDLRDAIADVLAEQGK---------TDWAAQEFEF 217
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R YE + + G+ N + LA V L + RD IAR D + G +LP+
Sbjct: 218 VRT-YEATPTRRDRWRRTSGIHKVR-NPRALAAVRELWQTRDHIARRRDIAPGRILPDAA 275
Query: 213 LIEIAKQLPTTAAKLRRL 230
+I A P + KL L
Sbjct: 276 IINAATVNPDSIEKLTEL 293
>gi|212715679|ref|ZP_03323807.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661046|gb|EEB21621.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 431
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 34/232 (14%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ +FDT A+R+L ++R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 108 DLGLKPQRLFDTEIAARLLGMKRFGLAAVTEHYLGLTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 111 REDTHYLLYIYDIMKIKLSSMPK---ESENSDTPLTE--VYKRSYDVCRQLYEKELLSEN 165
D L+ + IM+ +L K E D L E ++ + V
Sbjct: 168 ALDVELLIELETIMRAELRRQGKIEWAEEEFDYALREGTAPRKEHPV------------- 214
Query: 166 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
+L I + + Q LAV L RD +AR D S +L +RT+IE+A++ P AA
Sbjct: 215 PWLRISHITEIMKDRQALAVAKALWTKRDELARQYDISPTLLLADRTIIEVAERKPHNAA 274
Query: 226 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKL 266
+ R + + ERY P+ IK SM ++I Q L
Sbjct: 275 QFRAVRSINERVRIQADAEQEKMFERY-APIQRKIKPSMWK----KIIQQAL 321
>gi|119505873|ref|ZP_01627938.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
gi|119458301|gb|EAW39411.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
Length = 380
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 42/239 (17%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ + +++D L L P L+++F+ K++H A D+ +R G+ M
Sbjct: 50 IQLAAAGQCWLLDPLTLD-DTQP-LQKLFRQTDLIKILHSASEDLEVFERWLGVLPRPMI 107
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT +A+ +L L L Y L+H ++ K+ +DW VRPL D YA +D +L
Sbjct: 108 DTQKAAAMLGLG-FGLSYRDLVHDLLSIDVAKDETQSDWLVRPLTDAQCHYAMQDVTFLA 166
Query: 119 YIYDIMKIK------LSSMPKESENSDT----PLTEVYKRSYDVCRQLYEKELLSENSYL 168
+ I++ + LS + +ES T PL + +K ++
Sbjct: 167 QCWPILEARAEASGYLSWILEESAAMVTGGRGPLAK-FKSAWK----------------- 208
Query: 169 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
LN+QQLAV+ L +WR+ AR + ++L ++ ++++AK++PT+ +L
Sbjct: 209 ---------LNSQQLAVLLDLIDWRESKARDRNRPRNWILHDKVILDLAKRIPTSMPQL 258
>gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7]
gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7]
Length = 393
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ ++++D L +R GP+ E+ +DP KV+H D+ R G +F
Sbjct: 66 VQVGDGRREWLIDPLLVR-DWGPF-AELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLF 123
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 124 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 182
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 183 QVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 230
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 231 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 273
>gi|118379200|ref|XP_001022767.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89304534|gb|EAS02522.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 722
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 42/233 (18%)
Query: 1 MQISTRTEDFVVDTLKLRVQVG--PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 58
+QIST D+++D L + + G L +VF K+ + +DI+WL+RDF + + N
Sbjct: 66 IQISTDQNDYLIDVLGINSKQGINECLSKVFLCKDIIKIFYAGQQDILWLKRDFDLSVVN 125
Query: 59 MFDTGQASRVLKL-ERNSLEYLLHHFCGVNAN----KEYQNADWRVRPLPDEMLRYARED 113
FD + + LK + NSL L+ +C + KE Q ++W RPL E L YA D
Sbjct: 126 YFDVKECASFLKKSDDNSLIQLIDRYCNYKLDKQKKKELQVSEWSNRPLSKEQLDYAALD 185
Query: 114 THYLLYI-YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL-------YEKELLSEN 165
+HYL+ I Y+++ +T + +KR+ +V Q+ YEK+
Sbjct: 186 SHYLIKIRYELL-------------CETIQSVGFKRTIEVINQMQQQTLKKYEKKKF--- 229
Query: 166 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 218
Y + + L Q+L ++ D +S Y + N IAK
Sbjct: 230 DYQYFFDLFQKQFKHQELYA-----------SQIDKQSEVYRIINVIYCRIAK 271
>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
Length = 383
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 26/261 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+ +++D L + P + +V ++P KV+H D+ Q FG+ ++F
Sbjct: 59 LQIADENGVYLIDPLAIS-DTQP-MADVLQNPAIVKVVHACSEDLEVFQYAFGVLPESLF 116
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT Q + +S+ Y LL ++ K+ +DW RPL D LRYA D YLL
Sbjct: 117 DT-QVAAGFAGYGSSIGYANLLREIKRIDIPKQETRSDWLQRPLSDAQLRYAALDVEYLL 175
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ---G 175
IY + KL + L V C+++ EK L S+ + Y +
Sbjct: 176 EIYRGLVEKLQQQQR--------LLWVEAD----CQRMIEK--LRNTSHENTYYTRVKSA 221
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 235
L+A+QL V+A +C WR+ A+ +D +L + +L +IA +LP +L+R+ +
Sbjct: 222 WKLDAEQLTVLAAICRWREGQAKKNDVPRSRILKDVSLFDIALKLPMDMQQLKRIQEIPS 281
Query: 236 SYI----ERYMGPVLSIIKNS 252
++ + ++G V+ + ++
Sbjct: 282 RFLGELGKEFLGVVIETLNDT 302
>gi|441517701|ref|ZP_20999435.1| putative ribonuclease D [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441455575|dbj|GAC57396.1| putative ribonuclease D [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 396
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 102/237 (43%), Gaps = 37/237 (15%)
Query: 5 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 64
T + F++D + + P + E + P + ++H AD+D+ L + G +FDT
Sbjct: 55 TGSGSFLIDPIANPEALDPVI-EALRGP--EWILHAADQDLPCLT-ELGFECTTLFDTEL 110
Query: 65 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 124
A R+L L + +L ++ F + K + ADW RPLPD+ L YA D L+ + D M
Sbjct: 111 AGRLLNLPKVNLAAMVAEFLQLGLAKGHGAADWSHRPLPDDWLNYAALDVEVLVELRDAM 170
Query: 125 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL-----------LSENSYLHIYGL 173
L K ++ RQ + EL S +H
Sbjct: 171 HSALDEAGK----------------FEWARQEFAYELTKPPAPPRPDRWRRTSNIHTLR- 213
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
N +QLA+V L R+ IA D + G VLP+ +I A PTT ++L L
Sbjct: 214 -----NQRQLAIVRELWTAREEIAARRDVAPGRVLPDSAIITAAVAAPTTESELTSL 265
>gi|342179232|sp|A6V8R6.2|RND_PSEA7 RecName: Full=Ribonuclease D; Short=RNase D
Length = 376
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ ++++D L +R GP+ E+ +DP KV+H D+ R G +F
Sbjct: 49 VQVGDGRREWLIDPLLVR-DWGPF-AELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLF 106
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 107 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 165
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 166 QVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 213
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 214 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 256
>gi|271967979|ref|YP_003342175.1| ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
gi|270511154|gb|ACZ89432.1| Ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
Length = 408
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 34/202 (16%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G + +FDT A R+L ER L ++ + G+ K + AD
Sbjct: 93 VLHAASQDLPCLA-ELGFHPRELFDTELAGRLLGYERVGLGMMVENVLGLKLEKGHSAAD 151
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE-----------NSDTPLTEV 145
W RPLP++ LRYA D L+ + D++ +L + K + S P ++
Sbjct: 152 WSTRPLPEDWLRYAALDVEVLVELRDVLHEELKTSGKLAWAQEEFASVLAYKSPAPRSDP 211
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++R+ + + + L+G LAVV L RD AR D + G
Sbjct: 212 WRRTSGIHK---------------VRSLRG-------LAVVRELWTLRDEFARESDIAPG 249
Query: 206 YVLPNRTLIEIAKQLPTTAAKL 227
VLP+ ++ A +LP T L
Sbjct: 250 RVLPDSAIVTAALELPRTTKAL 271
>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
Length = 373
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 17/242 (7%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
+++D LK+ P L +FKD K++H A D+ QR G+ +FDT +A+ ++
Sbjct: 58 WMIDPLKIE-DPAP-LANLFKDAGVIKILHSASEDLEVFQRWLGVLPLPLFDTQKAAALV 115
Query: 70 KLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 127
L+ L Y ++ C + K +DW RPL + YA +D +LL Y I+ +
Sbjct: 116 GLD-FGLGYRSMVLELCNEDLPKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAER 174
Query: 128 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 187
SM + V + + CR L + S Y I G L ++LA +
Sbjct: 175 CHSMQRYD--------WVLEDGEEACRGL--ASMSSAQYYRRIKG--AWKLEPRELAALI 222
Query: 188 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 247
+ EWR+ AR D+ +++ ++ +++A+ P LR ++ S + RY +L
Sbjct: 223 AISEWRERTAREKDKPRSWIIDDKACLQLAQVGPANMNDLRSKIEMHGSSMRRYGETLLD 282
Query: 248 II 249
++
Sbjct: 283 LV 284
>gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB]
gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB]
Length = 339
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 12/207 (5%)
Query: 24 YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHF 83
+LR F DP KV H D DI L+RD+G N+FDT +A+ +L + +L ++ +
Sbjct: 118 FLRPYFADPRLLKVTHAGDNDIRILKRDYGFEFRNIFDTHRAAHMLGSQYLALSSIIEQY 177
Query: 84 CGVNA--NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 141
GV K+ Q + W RPL + LRYA +DT YL +Y + KL S+ E +
Sbjct: 178 LGVEIEKTKKMQRSKWEARPLSEGQLRYAVQDTAYLADLYRHLNEKL-SLKGMQERARKV 236
Query: 142 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 201
V S + ++ L + I G A L A + L WR AR +
Sbjct: 237 FENVAAVS-------WREKTLDLLGHRRISGY--ASLTADSKGRLKKLYRWRFHKARQTN 287
Query: 202 ESTGYVLPNRTLIEIAKQLPTTAAKLR 228
+ +LP+ L+ +++ + +LR
Sbjct: 288 RAMFLILPDSALLSLSEGNWQSVEELR 314
>gi|381162216|ref|ZP_09871446.1| ribonuclease D [Saccharomonospora azurea NA-128]
gi|379254121|gb|EHY88047.1| ribonuclease D [Saccharomonospora azurea NA-128]
Length = 413
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 27/227 (11%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + LR + P L EV D + V+H A +D+ L + G+ ++FDT A R+
Sbjct: 79 FLIDPIPLRDHLAP-LAEVMND--VEWVLHAASQDLPCLA-ELGLRPPSLFDTELAGRLA 134
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+R +L L+ G K + ADW RPLP + L YA D L+ + + ++ +L+
Sbjct: 135 GHQRVALGTLVEELLGYRLEKGHSAADWSRRPLPVDWLNYAALDVELLVPLREKLEAELA 194
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQGAGLNAQQL 183
+ K D RQ +E +E + G+ A+ L
Sbjct: 195 ASGK----------------LDWARQEFEAVRTAEPPRPRSEPWRRTSGIHKIR-TARGL 237
Query: 184 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
A V L E RD +AR D + G +LP+ +I P T +L++L
Sbjct: 238 AAVRALWEARDELARKRDRAPGRILPDSAIINAVLAAPRTVTELQQL 284
>gi|189096244|pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
Adolescentis
Length = 440
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 44 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 93 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 152
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 150
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 210
Query: 151 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 211 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 261
Query: 211 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 253
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 262 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 319
Query: 254 QNA 256
Q+A
Sbjct: 320 QDA 322
>gi|119026007|ref|YP_909852.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC
15703]
gi|118765591|dbj|BAF39770.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC
15703]
Length = 431
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 44 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 91 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 150
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 150
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 151 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 208
Query: 151 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 209 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 259
Query: 211 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 253
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 260 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 317
Query: 254 QNA 256
Q+A
Sbjct: 318 QDA 320
>gi|154488712|ref|ZP_02029561.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis
L2-32]
gi|154082849|gb|EDN81894.1| 3'-5' exonuclease [Bifidobacterium adolescentis L2-32]
Length = 431
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 44 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 91 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 150
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 150
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 151 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 208
Query: 151 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 209 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 259
Query: 211 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 253
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 260 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 317
Query: 254 QNA 256
Q+A
Sbjct: 318 QDA 320
>gi|309811737|ref|ZP_07705515.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
gi|308434349|gb|EFP58203.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
Length = 459
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT SR+ L R L + HF GV KE+ D
Sbjct: 131 VLHAATQDLPCL-KALGLRPRKLFDTELGSRLAGLPRVGLAAVTEHFVGVTLAKEHSAVD 189
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP + L YA D L+ + D + L E++ + ++ D
Sbjct: 190 WSTRPLPHDWLVYAALDVERLVEVRDALAADL-----EAQGKAEWARQEFEALLDFEGPT 244
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+KE S LH A + +QLA V L + R+ IA+ D + G VLP+ +I++
Sbjct: 245 PKKEPWRRTSGLH------ALRDLRQLARVRALWQTREDIAQRRDTTPGRVLPDALIIDL 298
Query: 217 AKQLP 221
A++ P
Sbjct: 299 ARRNP 303
>gi|409910998|ref|YP_006889463.1| ribonuclease D [Geobacter sulfurreducens KN400]
gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
Length = 381
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 11/197 (5%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
L +F + +KV HGAD DI L RDFG+ + N+FDT A ++L L L
Sbjct: 71 LAPLFANAAIRKVFHGADYDIRSLHRDFGMEVNNLFDTMIACQLLGEREFGLAAQLRKRF 130
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
GV +K+YQ ADW RPL M+ YA +DT L+ + + L + + +
Sbjct: 131 GVELDKQYQRADWSRRPLTPGMIEYAVKDTTLLIELCWQLATDLEAKGRRGWVEE----- 185
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 204
++ ++ E E +L G + ++ + LAV+ L +RD AR D
Sbjct: 186 ----ECELLSRVRVAERGDEPFFLRFKG--ASRMDGRTLAVLEELLAFRDGRARQVDVPP 239
Query: 205 GYVLPNRTLIEIAKQLP 221
VL T+ E+A++ P
Sbjct: 240 FKVLGTDTVRELAERRP 256
>gi|54025710|ref|YP_119952.1| RNase D [Nocardia farcinica IFM 10152]
gi|54017218|dbj|BAD58588.1| putative RNase D [Nocardia farcinica IFM 10152]
Length = 424
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 27/227 (11%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F+VD + + +GP L E D + V+H AD+D+ L + G+ +FDT R+
Sbjct: 80 FLVDPIPVADALGP-LAEAIND--LEWVLHSADQDLPGLA-ELGLRPARLFDTELGGRLA 135
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
ER L ++ G K + ADW RPLP E L YA D LL + D + +L
Sbjct: 136 GFERVGLAAMVERLLGRTLRKGHGAADWSTRPLPAEWLNYAALDVELLLELRDAVAAELQ 195
Query: 130 SMPK------ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 183
K E E+ T TE D R+ S +H +QL
Sbjct: 196 RQGKSDWAAQEFEHVRT--TEPPAPKADRWRR---------TSGIHTL------RKPRQL 238
Query: 184 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
A+V L RD +AR+ D + +LP+ ++ A P + A+LR L
Sbjct: 239 AIVRELWTTRDTLARSRDIAPARILPDGAIVAAAAADPRSIAQLRAL 285
>gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 366
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 16/222 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+T E F++DTL+ + L+++F+D +K++H A DI ++R F + N+F
Sbjct: 41 VQIATENEIFLIDTLE-DLDFSK-LKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIF 98
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + SL+ LL + KE Q +DWR RPL + YA +D +L+
Sbjct: 99 DTQLAASFLGTQSQISLKALLKDILDIEMEKESQFSDWRKRPLSQKQFDYALKDVKHLIE 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
I ++ KL+ + + L E+ K ++ ++ K I +Q
Sbjct: 159 IKYHLESKLNQTDYKQYFYE-ELLEIQKTEFNTVENIHNK----------IGNIQKFSEK 207
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
Q+ A++ +WR+ +A+ + ++ N+ L IA + P
Sbjct: 208 TQKNAILVA--QWRESMAQQKNIPVRFIFDNKILYAIAHKNP 247
>gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514]
gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514]
Length = 372
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+T D ++D L + + P L + F + +MHG+D D+ L++ +F
Sbjct: 56 LQITTPLGDELIDPLS-GINLDPLL-DTFGG--HELIMHGSDYDLRLLRKHHAFVPKAIF 111
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT ASR+L + L +L+ H+ GV K Q ADW RPL M YAR DTHYL ++
Sbjct: 112 DTMLASRLLGHTQFGLVHLVAHYLGVTLEKGSQKADWAKRPLTPRMEAYARNDTHYLKHL 171
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC-RQLYEKELLSENSYLHIYGLQGAG-L 178
D +K SD + ++C R + E E ++ ++G+ L
Sbjct: 172 ADRLK------------SDLEVKGRLGWHQELCARLIIECSQNPEPDPDLVWRIKGSNRL 219
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
LAV+ + WR+ A + +VL + TLI+++
Sbjct: 220 YRPALAVLREVWRWREAEAIVANRPPYFVLRHETLIDLS 258
>gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
gi|399987123|ref|YP_006567472.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
gi|118169199|gb|ABK70095.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
gi|399231684|gb|AFP39177.1| Putative ribonuclease D [Mycobacterium smegmatis str. MC2 155]
Length = 415
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K + AD
Sbjct: 107 VLHAADQDLPCLA-EIGLRPGKLYDTELAGRLAGFERVNLAAMVQRLLGLQLMKGHGAAD 165
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPDE L YA D LL + + L K TE + ++ R
Sbjct: 166 WSKRPLPDEWLNYAALDVEVLLELRHAIAAVLEEQGK---------TEWAAQEFEHLRT- 215
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
Y + + + G+ N + LA V L RD IAR+ D + G +LP+ +I
Sbjct: 216 YVAQPTRRDRWRRTSGIHKV-RNPRALAAVRELWTTRDNIARSRDIAPGRILPDAAIINA 274
Query: 217 AKQLPTTAAKLRRL 230
A P T A+L L
Sbjct: 275 ATVDPKTTAELTAL 288
>gi|442323525|ref|YP_007363546.1| putative ribonuclease D [Myxococcus stipitatus DSM 14675]
gi|441491167|gb|AGC47862.1| putative ribonuclease D [Myxococcus stipitatus DSM 14675]
Length = 389
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 123/265 (46%), Gaps = 17/265 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T ++ F++DTL+ V+ L + +P + K H A D+ +L + G+ + +F
Sbjct: 49 LQVATDSDVFLLDTLQPGVEAR-LLAPLMGEPGRTKYFHAAQGDLQFLA-EAGVRVRGLF 106
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A+ +L + L + GV KE+Q +D+ +RPLP M Y D YL
Sbjct: 107 DTHRAATLLGWPKVGLADIAREKLGVELPKEHQQSDFSLRPLPPGMRDYIANDVRYL--- 163
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+L +E+ L EV +C + + + + L +GL+
Sbjct: 164 -----CELGRQVREATREAGILEEVELDCERLCDEAVARPDVGADFKPK---LPRSGLSP 215
Query: 181 QQL----AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 236
Q+ A+ L + R A ++ G +L N + +IA +LP++ L R + S
Sbjct: 216 AQMTLANAIAHALHKKRLEWAEKENVPMGRMLSNMAIADIATRLPSSPRDLARAAGVRGS 275
Query: 237 YIERYMGPVLSIIKNSMQNAANFEV 261
++ + VL+I++ + A N E+
Sbjct: 276 FVRTHGDEVLAILREQQEKARNGEL 300
>gi|377561634|ref|ZP_09791077.1| ribonuclease D [Gordonia otitidis NBRC 100426]
gi|377521196|dbj|GAB36242.1| ribonuclease D [Gordonia otitidis NBRC 100426]
Length = 436
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 15/221 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + + P + E P + V+H AD+D+ L R+ G +FDT A R+L
Sbjct: 90 FLLDPISEPDALAPVI-EALDGP--EWVLHAADQDLPCL-RELGFRCETVFDTELAGRLL 145
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+ + +L ++ F G+ K + ADW RPLPD+ L YA D L+ + D ++ L
Sbjct: 146 GVPKVNLAAMVSTFLGLGLQKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAVQQALL 205
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
K D E ++ D + + +H + + LA V L
Sbjct: 206 EAGK-----DEWAREEFRYVLDRPAPAPRTDRWRRTANVHTVK------SPRSLAAVREL 254
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
R+ +A+ D + G VLP+ ++ A +PT+ A L RL
Sbjct: 255 WTAREELAQRRDVAPGRVLPDSAIVTAANAMPTSIADLTRL 295
>gi|441207706|ref|ZP_20973646.1| ribonuclease III [Mycobacterium smegmatis MKD8]
gi|440627889|gb|ELQ89694.1| ribonuclease III [Mycobacterium smegmatis MKD8]
Length = 405
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K + AD
Sbjct: 97 VLHAADQDLPCLA-EIGLRPGKLYDTELAGRLAGFERVNLAAMVQRLLGLQLMKGHGAAD 155
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPDE L YA D LL + + L K TE + ++ R
Sbjct: 156 WSKRPLPDEWLNYAALDVEVLLELRHAIAAVLEEQGK---------TEWAAQEFEHLRT- 205
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
Y + + + G+ N + LA V L RD IAR+ D + G +LP+ +I
Sbjct: 206 YVAQPTRRDRWRRTSGIHKVR-NPRALAAVRELWTTRDNIARSRDIAPGRILPDAAIINA 264
Query: 217 AKQLPTTAAKLRRL 230
A P T A+L L
Sbjct: 265 ATVDPKTTAELTAL 278
>gi|86740037|ref|YP_480437.1| 3'-5' exonuclease [Frankia sp. CcI3]
gi|86566899|gb|ABD10708.1| 3'-5' exonuclease [Frankia sp. CcI3]
Length = 427
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 98 VLHAASQDLPCLS-ELGLRPSLLFDTELAGRLLGYERVGLGIMVERVLGYGLEKGHSAAD 156
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +
Sbjct: 157 WSTRPLPEPWLRYAALDVELLVELRDALEAELIEQNK---------IEFARQEFAAIVAA 207
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+E +E + G+ A + +QLA V + RD +AR D + G VLP+ +++
Sbjct: 208 PPREPRAE-PWRRTSGIHRAR-SRRQLAAVRAMWTARDRLARTRDVAPGRVLPDSAIMDA 265
Query: 217 AKQLPTTAAKLRRL 230
PT AA L RL
Sbjct: 266 VLNAPTDAAALVRL 279
>gi|221059461|ref|XP_002260376.1| 3'-5' exonuclease [Plasmodium knowlesi strain H]
gi|193810449|emb|CAQ41643.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H]
Length = 1124
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 3 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 62
+ T D+++DTL + ++ L ++ DP K+++ + I +Q+DF IY NM D
Sbjct: 524 VGTEECDYIIDTLYMFEKIHE-LNDITTDPNILKILYKSKNIIPVMQKDFSIYFVNMIDI 582
Query: 63 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 122
S L + RNSL YL+H++ VN N + RPL +++ R HYL Y+++
Sbjct: 583 SVCSDFLSV-RNSLHYLVHNYFHVNVNSAGNGLNALTRPLSPDLVSNLRMPFHYLYYLFE 641
Query: 123 IMKIKL 128
+K L
Sbjct: 642 YVKTDL 647
>gi|383458490|ref|YP_005372479.1| putative ribonuclease D [Corallococcus coralloides DSM 2259]
gi|380734173|gb|AFE10175.1| putative ribonuclease D [Corallococcus coralloides DSM 2259]
Length = 381
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 19/266 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+Q+ T T+ F+ DTL+ V P L + +DP + K H A D+ +L + G+ + +
Sbjct: 41 LQLGTDTDIFLFDTLQ--PGVDPRLLSPMMEDPARTKYFHAAQGDLQFLA-EAGVRVRGL 97
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT +A +L + L L GV KE+Q +D+ +RPLP M Y D YL
Sbjct: 98 FDTHRAVTLLGWPKVGLADLARERLGVELPKEHQQSDFSLRPLPPGMRDYIANDVRYL-- 155
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+L +++ L EV D R E E E + L GL+
Sbjct: 156 ------CELGRQVRDACREADILEEVL---LDCERMCAEAEARPEVGAEYKPKLSRTGLS 206
Query: 180 AQQ----LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 235
Q A+ GL + R A D+ G +L N + ++A + P T L R +
Sbjct: 207 TAQYALAYAIAQGLHKLRLEWAEKDNVPMGRMLSNMAITDLALKQPDTHKDLARAAGVRG 266
Query: 236 SYIERYMGPVLSIIKNSMQNAANFEV 261
+ + + +L++I++ Q A E+
Sbjct: 267 AVVRAHGDDILALIRDHQQKATRGEL 292
>gi|379709831|ref|YP_005265036.1| putative RNase D [Nocardia cyriacigeorgica GUH-2]
gi|374847330|emb|CCF64400.1| putative RNase D [Nocardia cyriacigeorgica GUH-2]
Length = 446
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 15/221 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + + + P L E D + V+H AD+D+ L + G+ +FDT R+
Sbjct: 95 FLIDPIPVADDLTP-LAEAIND--LEWVLHSADQDLPGLAQ-LGLRPARLFDTELGGRLA 150
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+R L ++ G K + ADW RPLP+ L YA D LL + + + I L
Sbjct: 151 GFDRVGLAAMVERLLGRALRKGHGAADWSTRPLPEAWLNYAALDVELLLELRESVAIALH 210
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
K TE + ++ R L E + + G+ A+QLA V L
Sbjct: 211 QQGK---------TEWAAQEFEHVR-LTEPAPPKADRWRRTSGIHTL-RRARQLATVREL 259
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
RD +AR D + +LP+ +I A P T A+LR L
Sbjct: 260 WTTRDELARQRDIAPSRILPDSAIIAAANAEPRTIAQLREL 300
>gi|336177812|ref|YP_004583187.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
gi|334858792|gb|AEH09266.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
Length = 474
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A++D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 109 VLHAANQDLPCLA-EVGLRPSRLFDTELAGRLLGYERVGLGIMVEKVLGFTLEKGHSAAD 167
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L + K + + +
Sbjct: 168 WSTRPLPEPWLRYAALDVELLVELRDALETELETQGKLA---------FAREEFAAIAAA 218
Query: 157 YEKE----LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
+E L S +H N +QLA V + RD IAR D + G VLP+
Sbjct: 219 PPREPRPGLWRRTSGIHRV------RNRRQLAAVRSMWTTRDRIARERDIAPGRVLPDSA 272
Query: 213 LIEIAKQLPTTAAKLRRL 230
+IE P L RL
Sbjct: 273 IIEAVLAAPADIEALTRL 290
>gi|384566551|ref|ZP_10013655.1| ribonuclease D [Saccharomonospora glauca K62]
gi|384522405|gb|EIE99600.1| ribonuclease D [Saccharomonospora glauca K62]
Length = 413
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 23/239 (9%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + LR + P L EV KD + V+H A +D+ L + G+ ++FDT A R+
Sbjct: 79 FLIDPIALRNDLAP-LAEVMKD--VEWVLHAASQDLPCLA-ELGLRPPSLFDTELAGRLA 134
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+R L L+ G K + ADW RPLP + L YA D L+ + D ++ +L+
Sbjct: 135 GHQRVGLGTLVEELLGYRLEKGHSAADWSRRPLPIDWLNYAALDVELLVPLRDKLEAELA 194
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH--IYGLQGAGLNAQQLAVVA 187
+ K E + ++ R E I+ ++ + LA V
Sbjct: 195 AAGK---------LEWALQEFEAVRTAEPPAPRPEPWRRTSGIHKIR----TPRGLAAVR 241
Query: 188 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYM 242
L E RD +AR D + G +LP+ +I A P + A+L++L + + Y R++
Sbjct: 242 ALWEARDELARKRDRAPGRILPDSAIINAALADPRSPAELQKLPVFGGRVQRRYTTRWL 300
>gi|147772956|emb|CAN67183.1| hypothetical protein VITISV_007528 [Vitis vinifera]
Length = 1587
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 187
VYKRS+D+C QLYEKELL+++SYL+ YGLQGA NAQQLA+VA
Sbjct: 1504 VYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQLAIVA 1546
>gi|296129572|ref|YP_003636822.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
gi|296021387|gb|ADG74623.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
Length = 417
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A+R+L +ER L ++ G+ KE+ D
Sbjct: 107 VLHAASQDLPGLA-EQGMRPSRVFDTELAARLLGMERVGLAAVVADTLGLGLAKEHSAVD 165
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP E LRYA D L+ + ++ +L+ K E ++ ++ R
Sbjct: 166 WSTRPLPTEWLRYAALDVEVLVEVRQVLAERLAVSGK---------AEWARQEFEAVRT- 215
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + GL +A++LAVV L RD AR D S G VLP+ ++
Sbjct: 216 APPPAPRAEPWRRVSGLHNV-RDARRLAVVRELYATRDRNARERDISPGRVLPDAAIVAA 274
Query: 217 AKQLPTTAAKLRRL 230
A+ LP T +L L
Sbjct: 275 AQALPRTVGQLTAL 288
>gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 364
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 16/222 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+T E F++DTL+ + L+++F+D +K++H A DI ++R F + N+F
Sbjct: 41 VQIATENEIFLIDTLE-DLDFSK-LKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIF 98
Query: 61 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + SL+ LL + KE Q +DWR RPL + YA +D +L+
Sbjct: 99 DTQLAASFLGTQSQISLKALLKDILDIEMEKESQFSDWRKRPLSQKQFDYALKDVEHLIE 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
I ++ KL+ + + L ++ K ++ ++ K I +Q
Sbjct: 159 IKYHLESKLNQTDYKQYFYE-ELLDIQKTEFNTVENIHNK----------IGNIQKFSEK 207
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
Q+ A++ +WR+ +A+ + ++ N+ L IA + P
Sbjct: 208 TQKNAILVA--QWRESMAQQKNIPVRFIFDNKILYAIAHKNP 247
>gi|395215204|ref|ZP_10400856.1| 3'-5' exonuclease [Pontibacter sp. BAB1700]
gi|394455924|gb|EJF10318.1| 3'-5' exonuclease [Pontibacter sp. BAB1700]
Length = 395
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 16/208 (7%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + + P+ ++ +DPT K++H ++ DI+ L + G + + DT A+++L
Sbjct: 65 FIIDPFYID-DLTPFF-QLMEDPTITKIIHHSNNDILLLDK-MGCSVKGIVDTDVAAKIL 121
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
ER+SL +L +K Q+++W RPL ++ LRYA D YL KIK +
Sbjct: 122 NYERSSLATVLKEEFDKEIDKSQQSSNWNKRPLTEDQLRYAAIDVIYL------HKIK-A 174
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
+ +E E D ++ + QL E SEN +L + LN Q ++ GL
Sbjct: 175 KLLQEIEKLDR--MHWFEEENHLLEQLKYTE--SENPHLRLK--HSYRLNYYQQYLLKGL 228
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIA 217
+R+ +AR ++ +V+PN L+E+A
Sbjct: 229 YAFRENMARQFNKPAHFVIPNDALVELA 256
>gi|418463537|ref|ZP_13034542.1| ribonuclease D [Saccharomonospora azurea SZMC 14600]
gi|359732844|gb|EHK81852.1| ribonuclease D [Saccharomonospora azurea SZMC 14600]
Length = 395
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 27/227 (11%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + LR + P L EV D + V+H A +D+ L + G+ ++FDT A R+
Sbjct: 61 FLIDPIPLRDHLAP-LAEVMND--VEWVLHAASQDLPCLA-ELGLRPPSLFDTELAGRLA 116
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+R +L L+ G K + ADW RPLP + L YA D L+ + + ++ +L+
Sbjct: 117 GHQRVALGTLVEELLGYRLEKGHSAADWSRRPLPVDWLNYAALDVELLVPLREKLEAELA 176
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQGAGLNAQQL 183
+ K D RQ +E +E + G+ A+ L
Sbjct: 177 ASGK----------------LDWARQEFEAVRTAEPPRPRSEPWRRTSGIHKIR-TARGL 219
Query: 184 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
A V L E RD +AR D + G +LP+ +I P T +L++L
Sbjct: 220 AAVRALWEARDELARKRDRAPGRILPDSAIINAVLADPRTVTELQQL 266
>gi|406894045|gb|EKD38950.1| hypothetical protein ACD_75C00553G0006 [uncultured bacterium]
Length = 378
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 40/269 (14%)
Query: 1 MQISTRTED-FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI+ ED +++D + V+ L ++ D K++H A +D+ LQR G N+
Sbjct: 46 IQIALSDEDCYLIDPVA--VKNLQALGQLLSDRGVVKILHDAPQDLAILQRATGATPQNI 103
Query: 60 FDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL- 117
FDT A+ L SL L+ + +KE +W RPL +E +RYA +D YL
Sbjct: 104 FDTRLAAGFSNLPATLSLGNLVKELLDIELSKEETRTNWLQRPLTEEQVRYALDDVRYLR 163
Query: 118 ----LYIYDIMKIKLSSMPKESEN--------SDTPLTEVYKRSYDVCRQLYEKELLSEN 165
L + I+ K+ S +E N TP E Y R ++
Sbjct: 164 AVRVLLLSRIIGPKIRSWLQEDLNLLNNPATYCGTPADERYLRIRNI------------- 210
Query: 166 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
L+ LA++ L WRD +A+ D G+++ + L+EIA++ P T
Sbjct: 211 ----------GTLDRPGLAILMNLTTWRDGMAKKHDRPRGHIIKDTILLEIARKKPRTLL 260
Query: 226 KLRRLLKSKHSYIERYMGPVLSIIKNSMQ 254
+L+ + + + +Y +++II +++
Sbjct: 261 ELKNGSEISDNAMNKYGQNIVAIIDTTLK 289
>gi|403512793|ref|YP_006644431.1| 3'-5' exonuclease family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402802886|gb|AFR10296.1| 3'-5' exonuclease family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 444
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 12/220 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + + +FDT A R+L +R L +++ + KE+ D
Sbjct: 132 VLHAAHQDLPCLA-EVNLRPGRLFDTELAGRLLGYQRVGLGFMVERLLDIRLAKEHSAVD 190
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP++ LRYA D L+ + D ++ +L K E + +
Sbjct: 191 WSQRPLPEDWLRYAALDVEILIELRDRLEAELEEAGK---------LEWAREEFAAILAA 241
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
KE + + + G+ + LA V L RD IAR D S G VLP+ ++E
Sbjct: 242 PPKEPRT-DPWRRTSGIHKV-RKQRSLAAVRELWYERDRIARERDTSPGRVLPDAAIVEA 299
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 256
A +P A +L R+ + RY L I + A
Sbjct: 300 ATTMPRDANELNRIRQFGIKLARRYPATWLKAIDRARDMA 339
>gi|354617195|ref|ZP_09034673.1| 3'-5' exonuclease, partial [Saccharomonospora paurometabolica YIM
90007]
gi|353218454|gb|EHB83215.1| 3'-5' exonuclease, partial [Saccharomonospora paurometabolica YIM
90007]
Length = 282
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 102/233 (43%), Gaps = 37/233 (15%)
Query: 7 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 66
T +VD + L ++ P L EV + V+H A +D+ L + G++ +FDT A
Sbjct: 76 TGTLLVDPIPLDGELAP-LAEVLG--AHEWVLHAASQDLPCLA-ELGLHPPALFDTELAG 131
Query: 67 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 126
R+ ER +L L+ G K + ADW RPLP E L YA D L+ + ++
Sbjct: 132 RLAGYERVALGTLVETLLGYRLEKGHSAADWSRRPLPAEWLNYAALDVELLVPLRGKLEA 191
Query: 127 KLSSMPK------ESENSDT-----PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG 175
+L+ K E E + T P E ++R+ S +H
Sbjct: 192 ELAGQGKLDWAHQEFEAARTAGPPAPRAEPWRRT----------------SGIHKIK--- 232
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
A+ LA V L E RD +AR D + G VLP+ ++ P T A+LR
Sbjct: 233 ---TARGLAAVRALWEERDALARGRDRAPGRVLPDSAIVNAVLADPRTDAELR 282
>gi|226185448|dbj|BAH33552.1| putative ribonuclease D [Rhodococcus erythropolis PR4]
Length = 429
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G+ +FDT A R+ ER L ++ V K + AD
Sbjct: 102 VLHSADQDLPGLA-ELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAAD 160
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD L YA D LL + D M+ +L S K E K ++ R
Sbjct: 161 WSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGK---------LEWAKEEFEYIRLA 211
Query: 157 YEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 214
+ + HI L+ +QLA V L + R+ +AR D S VLP+ +I
Sbjct: 212 GPPKPKPDRWRRTSHITSLK----TTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAII 267
Query: 215 EIAKQLPTTAAKLRRL 230
+ A + P + LR L
Sbjct: 268 DAALKDPQSLDALRSL 283
>gi|453070952|ref|ZP_21974179.1| ribonuclease D [Rhodococcus qingshengii BKS 20-40]
gi|452760035|gb|EME18378.1| ribonuclease D [Rhodococcus qingshengii BKS 20-40]
Length = 429
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G+ +FDT A R+ ER L ++ V K + AD
Sbjct: 102 VLHSADQDLPGLA-ELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAAD 160
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD L YA D LL + D M+ +L S K E K ++ R
Sbjct: 161 WSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGK---------LEWAKEEFEYIRLA 211
Query: 157 YEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 214
+ + HI L+ +QLA V L + R+ +AR D S VLP+ +I
Sbjct: 212 GPPKPKPDRWRRTSHITSLK----TTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAII 267
Query: 215 EIAKQLPTTAAKLRRL 230
+ A + P + LR L
Sbjct: 268 DAALKDPRSLDALRSL 283
>gi|297561776|ref|YP_003680750.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296846224|gb|ADH68244.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 421
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 46/223 (20%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + + ++FDT A R+L +R L +++ + KE+ D
Sbjct: 109 VLHAAHQDLPCLS-EINLRPRSLFDTELAGRLLGYQRVGLGFMVERLLHLRLAKEHSAVD 167
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIK-----------------LSSMPKESENSD 139
W RPLP++ LRYA D L+ + D ++++ LS+ PKE
Sbjct: 168 WSQRPLPEDWLRYAALDVEILIDLRDSLEVELEETGKLEWAREEFAAVLSAPPKE----- 222
Query: 140 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 199
P T+ ++R+ + R N + LA V L RD IA+
Sbjct: 223 -PRTDPWRRTSGIHRV----------------------RNQRALAAVRELWYERDRIAQE 259
Query: 200 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 242
D S G VLP+ ++E A +P T +L ++ + RY+
Sbjct: 260 RDISPGRVLPDAAIVEAATAMPRTTTELAKIRQFGIKLARRYL 302
>gi|444432003|ref|ZP_21227163.1| putative ribonuclease [Gordonia soli NBRC 108243]
gi|443887177|dbj|GAC68884.1| putative ribonuclease [Gordonia soli NBRC 108243]
Length = 431
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 15/243 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + V + P + +V P + V+H AD+D+ L R+ ++DT A R+L
Sbjct: 92 FLLDPIDEPVALRPVI-DVLDGP--EWVLHAADQDLPCL-RELDFVCAEVYDTELAGRLL 147
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
L + +L ++ F G+ K + ADW RPLPD+ L YA D L+ + D + L
Sbjct: 148 GLPKVNLAAMVAEFLGLGLAKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAIDAALV 207
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
K+ + ++ D + + S +H N + LA V L
Sbjct: 208 DAGKDDWAR-----QEFRHILDRPPTPPRTDRWRKTSNIHTVK------NVRALAGVREL 256
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 249
R+ IA D + G VLP+ ++ A P+T +L RL R G L+ +
Sbjct: 257 WTAREEIAARRDIAPGRVLPDSAMVTAATAAPSTIDELTRLPVFGGPRQRRLAGTWLTAL 316
Query: 250 KNS 252
+ +
Sbjct: 317 QRA 319
>gi|145224502|ref|YP_001135180.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
gi|145216988|gb|ABP46392.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
Length = 424
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 12/198 (6%)
Query: 33 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 92
T + V+H AD+D+ L + G+ ++DT A R+ +R +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLA-EIGMRPTALYDTELAGRLANFDRVNLAAMVQRLLGLQLTKGH 166
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 152
ADW RPLPDE L YA D L + + + L K E ++ ++
Sbjct: 167 GAADWSKRPLPDEWLNYAALDVEVLTDLREAIAAVLDEQGK---------AEWARQEFEY 217
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R +E + + G+ + + LA V L RD IAR D + G +LP+
Sbjct: 218 LRT-FEGSPTRRDRWRRTSGIHKV-RDPRALAAVRELWTTRDQIARRRDIAPGRILPDSA 275
Query: 213 LIEIAKQLPTTAAKLRRL 230
+I A P T KL L
Sbjct: 276 IISAATANPDTIEKLTAL 293
>gi|389585358|dbj|GAB68089.1| 3'-5' exonuclease domain containing protein [Plasmodium cynomolgi
strain B]
Length = 1136
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 3 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 62
+ T D+++DTL + Q+ L EV DP K+++ + +Q+DF IY N+ D
Sbjct: 516 VGTEECDYIIDTLHMFEQMHE-LNEVTTDPNILKILYKSKNITPVMQKDFSIYFVNIIDI 574
Query: 63 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 122
S L + RNSL YL+H++ V+ N + RPL +M+ R HYL Y+++
Sbjct: 575 SICSDFLSV-RNSLPYLVHNYFHVSVNSAGHGLNALTRPLSPDMVHNLRTPFHYLYYLFE 633
Query: 123 IMKIKL 128
+K L
Sbjct: 634 YVKTDL 639
>gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus erythropolis SK121]
gi|229321815|gb|EEN87610.1| ribonuclease D [Rhodococcus erythropolis SK121]
Length = 431
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G+ +FDT A R+ ER L ++ V K + AD
Sbjct: 104 VLHSADQDLPGLA-ELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAAD 162
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD L YA D LL + D M+ +L S K E K ++ R
Sbjct: 163 WSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGK---------LEWAKEEFEYIRLA 213
Query: 157 YEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 214
+ + HI L+ +QLA V L + R+ +AR D S VLP+ +I
Sbjct: 214 GPPKPKPDRWRRTSHITSLK----TTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAII 269
Query: 215 EIAKQLPTTAAKLRRL 230
+ A + P + LR L
Sbjct: 270 DAALKDPRSLDALRSL 285
>gi|296117768|ref|ZP_06836352.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
gi|295969499|gb|EFG82740.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
Length = 411
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 24/204 (11%)
Query: 34 KKKVMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 90
+K V+H A D+ WL G+Y ++FDT A R+L ++ +L + F G+ +K
Sbjct: 87 EKWVVHAAVTDLTSLAWL----GLYPGSLFDTEVAGRLLGIQNPNLASVTEEFLGIELDK 142
Query: 91 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 150
Y DW PL L YA D LL + D M +L K +E + + K+
Sbjct: 143 GYGATDWSRFPLSKAQLIYAALDVDTLLELADEMAYELEQEDK-TEWAQEEFAVIVKQFA 201
Query: 151 DVC----RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 206
++ R YE S IY Q LAV L + R+ A D + G
Sbjct: 202 NISAPAPRHWYES-----RSLRGIY-------EPQSLAVAKALWQEREKEALDSDIAPGQ 249
Query: 207 VLPNRTLIEIAKQLPTTAAKLRRL 230
+L N TL+E+AK++P + +LRR+
Sbjct: 250 ILSNTTLVELAKRIPRSVNQLRRI 273
>gi|315444833|ref|YP_004077712.1| ribonuclease D [Mycobacterium gilvum Spyr1]
gi|315263136|gb|ADT99877.1| ribonuclease D [Mycobacterium gilvum Spyr1]
Length = 424
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 12/198 (6%)
Query: 33 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 92
T + V+H AD+D+ L + G+ ++DT A R+ +R +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLA-EIGMRPTALYDTELAGRLANFDRVNLAAMVQRLLGLQLTKGH 166
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 152
ADW RPLPDE L YA D L + + + L K E ++ ++
Sbjct: 167 GAADWSKRPLPDEWLNYAALDVEVLTDLREAIAAILDEQGK---------AEWARQEFEY 217
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R +E + + G+ + + LA V L RD IAR D + G +LP+
Sbjct: 218 LRT-FEGSPTRRDRWRRTSGIHKVR-DPRALAAVRELWTTRDQIARRRDIAPGRILPDSA 275
Query: 213 LIEIAKQLPTTAAKLRRL 230
+I A P T KL L
Sbjct: 276 IISAATANPDTIEKLTAL 293
>gi|403737804|ref|ZP_10950532.1| ribonuclease D [Austwickia chelonae NBRC 105200]
gi|403191916|dbj|GAB77302.1| ribonuclease D [Austwickia chelonae NBRC 105200]
Length = 479
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G++ +FDT +R+ R L +L H+ GV KE+ D
Sbjct: 173 VLHAATQDLPCLA-ELGLHPTRLFDTELGARLAGQPRVGLAAVLEHYLGVTLAKEHSAVD 231
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ L K +E ++ +
Sbjct: 232 WSTRPLPEPWLRYAVLDVEVLVTLRDAVEKDLHDQGK---------SEWARQEFHALTS- 281
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + + + GL + + +AV L RD +AR+ D S V+P+ L++I
Sbjct: 282 FAGPARRVDPWRRLSGLHKIR-DRRTMAVARELWFARDDVARSRDISPSRVIPDAALLDI 340
Query: 217 AKQLPTTAAKL 227
A LP + +++
Sbjct: 341 AHALPQSLSEV 351
>gi|383831224|ref|ZP_09986313.1| ribonuclease D [Saccharomonospora xinjiangensis XJ-54]
gi|383463877|gb|EID55967.1| ribonuclease D [Saccharomonospora xinjiangensis XJ-54]
Length = 413
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + LR Q+ P L EV + + V+H A +D+ L + G+ ++FDT A R+
Sbjct: 79 FLIDPIPLRDQLAP-LAEVMN--SVEWVLHAASQDLPCLA-ELGLRPPSLFDTELAGRLA 134
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+R +L L+ G K + ADW RPLP E L YA D L+ + ++ +L+
Sbjct: 135 GYQRVALGTLVESLLGYRLEKGHSAADWSRRPLPVEWLNYAALDVELLVPLRAKLEAELA 194
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLY----EKELLSENSYLHIYGLQGAGLNAQQLAV 185
+ K L Y+ ++ R E S +H A+ LA
Sbjct: 195 ASGK--------LDWAYQ-EFEAVRTAEPPGPRAEPWRRTSGIHKI------RTARGLAA 239
Query: 186 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
V L E RD +AR D + G +LP+ ++ P T A+L +L
Sbjct: 240 VRALWEERDELARRRDRAPGRILPDSAIVNAVLADPRTPAELSKL 284
>gi|421738653|ref|ZP_16177001.1| ribonuclease D [Streptomyces sp. SM8]
gi|406692927|gb|EKC96600.1| ribonuclease D [Streptomyces sp. SM8]
Length = 418
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
L EV +D + ++H A +D+ L RD G+ +FDT A R+ R L ++ +
Sbjct: 111 LGEVVED--AEWLLHAATQDLPCL-RDIGMVPQRLFDTELAGRLAGFARVGLGAMVENVL 167
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
G + K + DW RPLP+ LRYA D L + D ++ +L+ K +
Sbjct: 168 GYSLEKGHSAVDWSTRPLPEPWLRYAALDVELLADLRDALEEELAGQGKLDWAH-----Q 222
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 204
+ K+ S +H +QLAVV L RD IA+ D S
Sbjct: 223 EFDAIASAPPAPPRKDPWRRTSGMHKV------RRRRQLAVVRELWNARDKIAQRRDISP 276
Query: 205 GYVLPNRTLIEIAKQLPTTAAKLRRL 230
G VLP+ ++E A LP L RL
Sbjct: 277 GKVLPDAAIVEAALALPVDVQALGRL 302
>gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
Length = 414
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 93/220 (42%), Gaps = 20/220 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A R+ ER +L L+ G K + AD
Sbjct: 103 VLHAASQDLPCLA-ELGLTPSALFDTELAGRLAGFERVALGTLVELLLGYRLEKGHGAAD 161
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP + L YA D L+ + D+++ +L K E +D R
Sbjct: 162 WSRRPLPADWLNYAALDVELLVQLRDVLEEELRQQGK---------LEWALEEFDAARTA 212
Query: 157 ----YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
E S +H + +QLA V L E RD +AR D + G VLP+
Sbjct: 213 PLPKPRAEPWRRTSGIHRI------RSTRQLAAVRSLWETRDALARERDLAPGRVLPDSA 266
Query: 213 LIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
L++ A + P A L L + R G + ++ +
Sbjct: 267 LVDAATRNPADEAALLALPVFRGRAQRRMAGTWMGALRKA 306
>gi|355575967|ref|ZP_09045340.1| ribonuclease D [Olsenella sp. oral taxon 809 str. F0356]
gi|354817183|gb|EHF01693.1| ribonuclease D [Olsenella sp. oral taxon 809 str. F0356]
Length = 376
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 20/234 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E VD + + + P LR + +D + KV H +D+ + G +F
Sbjct: 41 IQVATADESCAVDPILIE-DLTP-LRRLLEDRSVTKVFHACTQDLEVILDGMGCVPAPVF 98
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L R + Y L+ CGV K DW RPL E LRYA +D YL
Sbjct: 99 DTQLAAAFLG-HRQQIGYGALVEACCGVRLPKAESLTDWSRRPLDAEQLRYAEDDVIYLP 157
Query: 119 YIYDIMKIKLSSMPKES--ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
IY+ M +L+ + + E LT+ + D ++YLH+ +
Sbjct: 158 RIYEQMVSELARRDRLAWLEPEMRSLTDPSRVERD-----------PRDAYLHLK--RSN 204
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +QL+V C WR+ A + +V+ + L+E+ K+ P +LRR+
Sbjct: 205 SLTRRQLSVAREACAWREREAARRNIPRKWVVSDEVLVELCKRAPRGVDRLRRI 258
>gi|223995113|ref|XP_002287240.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976356|gb|EED94683.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 743
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQ--VGPYLREVFKDPTKKKVMHG-ADRDIVWLQRDFGIYLC 57
M +T +D+V+D L V + YL +F DP K+ HG D L RDFGI +
Sbjct: 327 MTANTVVKDYVIDPLAPNVWDAIPHYLGPLFSDPRIVKIGHGIGGMDTTSLHRDFGIVIV 386
Query: 58 NMFDTGQASRVLKLERNS---LEYLLHHF---CG---VNANKEYQNADWRVRPLPDEMLR 108
N FDT +AS VL + L L H+ C N ++Q +DWR RPL D+ L
Sbjct: 387 NAFDTFEASAVLLHGKKGGLGLAKLCKHYGLPCWQDYANLKSQFQCSDWRKRPLCDDALE 446
Query: 109 YAREDTHYLLYIYDIM 124
Y R D +L+ I ++
Sbjct: 447 YGRYDVRFLITIRQLL 462
>gi|156100329|ref|XP_001615892.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
Sal-1]
gi|148804766|gb|EDL46165.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
Length = 1114
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 3 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 62
+ T D+++D L + Q+ L EV DP K+++ + I +QRDF IY N+ D
Sbjct: 505 VGTEECDYILDALHIFEQMHA-LNEVTTDPNILKIVYKSKSIIPVMQRDFSIYFVNIIDI 563
Query: 63 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 122
S L + RNSL +L+H++ V+ N Q + RPL + ++ R HYL Y+++
Sbjct: 564 SVCSDFLNV-RNSLAFLVHNYFHVSVNSAGQGFNALTRPLSTDAVQNLRMPFHYLYYLFE 622
Query: 123 IMKIKL 128
+K L
Sbjct: 623 YVKTDL 628
>gi|256395899|ref|YP_003117463.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928]
gi|256362125|gb|ACU75622.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928]
Length = 443
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 37 VMHGADRDIVWLQRDFGIY--------LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 88
V+H A +D+ L + G++ +FDT +R+ ER L L+ +
Sbjct: 115 VLHAASQDLACLA-EVGMHPPARRPDGTGGLFDTELGARLGGHERVGLGPLVAEVLKLEL 173
Query: 89 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 148
K + +DW RPLP+ LRYA D L+ + DI++ +L K + ++
Sbjct: 174 EKGHSASDWSTRPLPEAWLRYAALDVEVLVEVRDIIEDELRGAGK---------LDWARQ 224
Query: 149 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 208
+D + +E + GL +QLAVV L E RD +AR D + VL
Sbjct: 225 EFDAVASAPPPKPRAE-PWRRTSGLHKV-RRPRQLAVVRALWESRDELARRRDMTPTRVL 282
Query: 209 PNRTLIEIAKQLPTTAAKLRRL 230
P++ +I+ A LP TAA++R +
Sbjct: 283 PDQAIIDSALSLPGTAAQMRTI 304
>gi|187735079|ref|YP_001877191.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
gi|187425131|gb|ACD04410.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
Length = 352
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 16/221 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q + T ++D L + +GP+ + + MHGAD D+ Q + ++
Sbjct: 42 IQYADETGSCLIDPLSIE-DMGPFYNWL---KETEVWMHGADYDMSLFQNAWETLPAMIW 97
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A+R+L + L L+ HF G+ +K Q ADW RPL M+ YA D +Y+L +
Sbjct: 98 DTQTAARLLGFRQFGLAALVEHFHGITLSKSSQKADWARRPLSPTMVTYALNDVNYMLDM 157
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LN 179
D + L + E+ + S + R E+ L + +QG G LN
Sbjct: 158 ADKLTAALRKKGRMGW-----FEEICRHSMERAR---ERHLAGHQD---PWRIQGCGKLN 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
+ LA + + WRD A+ D+ V N LI+ + L
Sbjct: 207 RKGLAALREMWTWRDAEAKTWDKPAFMVCSNADLIQWSVAL 247
>gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
gi|291339472|gb|EFE66428.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
Length = 432
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMLPTRLFDTELAGRLAGFPRVGLGAMVENVLGYVLEKGHSAVD 176
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + + ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +Q+AVV L + RD IAR D S G VLP+ ++E
Sbjct: 228 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWQTRDRIARRRDLSPGKVLPDAAIVEA 285
Query: 217 AKQLPTTAAKLRRL 230
A LP A L L
Sbjct: 286 ALALPADARALAAL 299
>gi|108799177|ref|YP_639374.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
gi|119868292|ref|YP_938244.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
gi|126434785|ref|YP_001070476.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
gi|108769596|gb|ABG08318.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
gi|119694381|gb|ABL91454.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
gi|126234585|gb|ABN97985.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
Length = 428
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 33 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 92
T + V+H AD+D+ L + G+ ++DT A R+ L R +L ++ G+ K +
Sbjct: 113 TDEWVLHAADQDLPCLA-ELGMRPPKLYDTELAGRLAGLARVNLATMVSELLGLQLMKGH 171
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 152
ADW RPLPD+ L YA D LL + D + L K T+ + ++
Sbjct: 172 GAADWSKRPLPDDWLNYAALDVEVLLELRDAVAAVLDDQGK---------TDWAIQEFEH 222
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R YE + + G+ N + LA V L RD IAR D + G +LP+
Sbjct: 223 LRT-YEAAPTRRDRWRRTSGIHKVR-NPRALAAVRELWTTRDHIARRRDIAPGRILPDAA 280
Query: 213 LIEIAKQLPTTAAKLRRL 230
+I A P + KL L
Sbjct: 281 IINAATADPDSVEKLTAL 298
>gi|32564304|ref|NP_871964.1| Protein CRN-3, isoform b [Caenorhabditis elegans]
gi|26985796|emb|CAD59140.1| Protein CRN-3, isoform b [Caenorhabditis elegans]
Length = 594
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QISTR EDF++D + VG L E F +P KV HG+D D++WLQRD+G+++ N+F
Sbjct: 319 IQISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVFHGSDSDVLWLQRDYGVHVVNLF 377
Query: 61 DT 62
DT
Sbjct: 378 DT 379
>gi|374985846|ref|YP_004961341.1| ribonuclease D [Streptomyces bingchenggensis BCW-1]
gi|297156498|gb|ADI06210.1| ribonuclease D [Streptomyces bingchenggensis BCW-1]
Length = 424
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L RD G+ +FDT A R+ R L ++ + G K + D
Sbjct: 114 VLHAATQDLPCL-RDIGMLPGRLFDTELAGRLAGFARVGLGAMVENILGYALEKGHSAVD 172
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD L YA D L+ + D ++ +L+ K + + +
Sbjct: 173 WSTRPLPDPWLHYAALDVELLVDLRDALEEELTRQGKLNWAH-----QEFAAIAAAPPAP 227
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
K+ S +H +Q+AVV L RD IA+ D S G VL + ++E
Sbjct: 228 PRKDPWRRTSGMHKV------RRRRQMAVVRELWTARDKIAQRRDVSPGKVLGDAAIVEA 281
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
A LPTTA L L H R +
Sbjct: 282 ALALPTTARALGALGGFGHRMGRRQL 307
>gi|313140484|ref|ZP_07802677.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
gi|421735613|ref|ZP_16174522.1| ribonuclease D [Bifidobacterium bifidum IPLA 20015]
gi|313132994|gb|EFR50611.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
gi|407297096|gb|EKF16569.1| ribonuclease D [Bifidobacterium bifidum IPLA 20015]
Length = 428
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + M+ +L S K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKSQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFRMI 279
>gi|404446630|ref|ZP_11011735.1| ribonuclease D [Mycobacterium vaccae ATCC 25954]
gi|403650123|gb|EJZ05402.1| ribonuclease D [Mycobacterium vaccae ATCC 25954]
Length = 442
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 14/195 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G++ +++DT A R+ +R +L ++ G+ K + AD
Sbjct: 131 VLHAADQDLPCLA-EIGMHPPSLYDTELAGRLANYDRVNLAAMVQRLLGLQLTKGHGAAD 189
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYDVCRQ 155
W RPLP E L YA D LL + D + L +E +D E Y R+ +
Sbjct: 190 WSKRPLPAEWLNYAALDVEVLLELRDAVDAVL----QEQGKADWAAQEFEYLRTAEATPT 245
Query: 156 LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 215
++ S +H + + LA V L + RD IAR D + G +LP+ +I
Sbjct: 246 --RRDRWRRTSGIHKV------RDPRTLAAVRELWQTRDQIARRRDIAPGRILPDSAIIS 297
Query: 216 IAKQLPTTAAKLRRL 230
A P T KL L
Sbjct: 298 AATANPDTVEKLTAL 312
>gi|289706235|ref|ZP_06502598.1| putative ribonuclease D [Micrococcus luteus SK58]
gi|289557074|gb|EFD50402.1| putative ribonuclease D [Micrococcus luteus SK58]
Length = 416
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 12/231 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G+ +FDT A+RV L R L +L GV KE+ AD
Sbjct: 100 ILHAASQDLPCLA-EQGLRPDRLFDTELAARVAGLPRVGLAAVLEELLGVTLAKEHSAAD 158
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W VRPLP+ ML YA D L+ + + + +L +D L + V +
Sbjct: 159 WSVRPLPEAMLAYAALDVELLVPLREALIARL--------EADGKLAWAEQEFEHV--RT 208
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
++ + G Q Q+ AV+ L E R+ +AR D + G ++P+R+++
Sbjct: 209 APPPAPKKHPWRGTSGSQTLRRPVQR-AVLKRLWEAREDLARHRDVAPGRLIPDRSIVAA 267
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLK 267
A LP T LR+ R ++ I+ +++A + A +++
Sbjct: 268 AAALPRTVPALRQTSGFHGRAASREAPRWIAAIRAGVEDAERGDAPAAQIR 318
>gi|262202194|ref|YP_003273402.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
gi|262085541|gb|ACY21509.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
Length = 447
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 106/231 (45%), Gaps = 16/231 (6%)
Query: 1 MQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R F++D + + P + + + P + V+H AD+D+ L R+ G +
Sbjct: 90 IQIRRRGAGTFLLDPIDEPDALAPVI-DALRGP--EWVLHAADQDLPCL-RELGFVCAEL 145
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+L L + +L ++ F G+ K + ADW RPLPD+ L YA D L+
Sbjct: 146 YDTELAGRLLGLAKVNLAAMVAEFLGLGLRKGHGAADWSRRPLPDDWLNYAALDVEVLVE 205
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D M L++ K D E + + + S +H +
Sbjct: 206 LRDAMDAALAAAGK-----DRWAREEFAYVLNRPPAPPRPDRWRRTSNIHTIK------S 254
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
A+ LA V L R+ IA D + G VLP+ ++ A PT+ A+L RL
Sbjct: 255 ARTLAAVRELWTTRESIAERRDVAPGRVLPDSAIVNAATANPTSIAELTRL 305
>gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 413
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 97 VLHSADQDLPCLA-ELGLEPAALFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 155
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD L YA D LL + + M +L++ K TE + ++ R
Sbjct: 156 WSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGK---------TEWAAQEFEHVRLA 206
Query: 157 ----YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
+ + S +H + +QLA V L RD IAR D S +LP+
Sbjct: 207 GPPQPKPDRWRRTSQIHSLK------SPRQLAAVRELWTTRDEIARKRDISPSRILPDSA 260
Query: 213 LIEIAKQLPTTAAKLRRL 230
++ A P + LR L
Sbjct: 261 IVTAASADPKSIDTLRAL 278
>gi|390937080|ref|YP_006394639.1| 3'-5' exonuclease [Bifidobacterium bifidum BGN4]
gi|389890693|gb|AFL04760.1| 3'-5' exonuclease [Bifidobacterium bifidum BGN4]
Length = 456
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 136 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 195
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + M+ +L S K+ +D + R+ +L I
Sbjct: 196 ALDVELLIELRRKMQRELKSQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 247
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R
Sbjct: 248 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFR 305
>gi|427390129|ref|ZP_18884535.1| hypothetical protein HMPREF9233_00038 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425733144|gb|EKU95950.1| hypothetical protein HMPREF9233_00038 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 409
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 33/298 (11%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F+VD + + ++G L E+ T + ++H AD+D+ L + G+ N+FDT A +L
Sbjct: 73 FLVDPVNIEDRLGG-LTELLA--TDQWILHAADQDLPSLY-ELGLRCTNLFDTEIAGMIL 128
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
E SL++ L GV+ KE+ N+DW RPL E+ YA D L+ ++
Sbjct: 129 GFEHLSLQWELEELLGVHLAKEHANSDWSARPLAPELRSYAALDVELLI------PLRDR 182
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL-NAQQLAVVAG 188
+ + T E C + + AG+ + + LA++
Sbjct: 183 LLELLDDAGRTAWCE------QECEHIRTAPPKKPKPDPWRKPAKAAGIRDRRTLAILRE 236
Query: 189 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 248
L RD +AR D +TG V+P++ L +A + P + A + K + +RY P+
Sbjct: 237 LWFARDEVARTMDIATGKVIPDKALGALAARRPRSLADVENTPTLKRAGRKRYARPLWKG 296
Query: 249 IKNSMQNAANFEVIAQKLKE------------ERMEVASEETEVL---VLDTSSNLKI 291
+ + N E+ A +L + EVA+E E++ VL+ ++ L I
Sbjct: 297 VARAW-NLDEAELPAARLPRSSSYPSSTQNWNKHNEVAAERWEIIRPAVLERAAELGI 353
>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
gi|210159428|gb|EEA90399.1| ribonuclease D [Collinsella stercoris DSM 13279]
Length = 377
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 20/232 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E V+D L + + P L E+ D KV H +D+ L G+ +F
Sbjct: 41 VQVATPDECVVIDPLTID-DLSP-LAELMADVDTLKVFHACSQDMEVLVHTLGVCPAPIF 98
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L ER Y L+H FCGV+ K DW RPL + + YA +D YL+
Sbjct: 99 DTQVAAGFLG-ERAQCSYHNLVHSFCGVSLPKTESLTDWSRRPLSPQQIEYAVDDVRYLI 157
Query: 119 YIYDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
Y +++ KL S+ + + D PL + D +++ + +
Sbjct: 158 DAYRVIESKLHSLGRTAWVRDEIRPLADPAHYRSD-----------PRSAFKRVKRINAC 206
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
+QLAV L WR+ A D +V+ + L+ + +++P T R
Sbjct: 207 --TRRQLAVARELAAWREHRAEDRDIPRKWVMSDEVLVALCRRVPKTIEDFR 256
>gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
Length = 422
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L D G++ +FDT A R+L R L L+ G KE+ AD
Sbjct: 106 ILHAATQDLPCLS-DLGLHPAALFDTELAGRLLGYPRVGLGTLVETVLGFTMLKEHSAAD 164
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD L YA D L+ + + + +L + K++ ++ +D R
Sbjct: 165 WSTRPLPDAWLEYAALDVEVLVELREALAAELVAQGKDAWA---------RQEFDWLRGF 215
Query: 157 ---YEKELLSENSYLH-IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
+ S +H + G +G LA V L RD IA+ D + ++P+
Sbjct: 216 EAPVRTDAWRRTSGMHRVRGRRG-------LAAVRELWTERDRIAQQRDVTPSRIIPDAA 268
Query: 213 LIEIAKQLPTTAAKLRRLLKSKHSYIERYM 242
++ A+ LP A L L ERY+
Sbjct: 269 IVAAAQDLPQDKAALLGLKGFHGRGAERYV 298
>gi|424852269|ref|ZP_18276666.1| ribonuclease III [Rhodococcus opacus PD630]
gi|356666934|gb|EHI47005.1| ribonuclease III [Rhodococcus opacus PD630]
Length = 429
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 108 ILHSADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 166
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES----ENSDTPLTEVYKRSYDV 152
W RPLPD L YA D L+ + ++M +L K E L K D
Sbjct: 167 WSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSGWAAQEFEHIRLAGPPKPKADR 226
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R+ HI L+ +QLA L + R+ +AR D S VLP+
Sbjct: 227 WRRTS-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDSA 271
Query: 213 LIEIAKQLPTTAAKLRRL 230
+I+ A + P + LR L
Sbjct: 272 IIDAATKDPRSIEALRAL 289
>gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S]
gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S]
Length = 445
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 129 VLHSADQDLPCLA-ELGLEPAALFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 187
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD L YA D LL + + M +L++ K TE + ++ R
Sbjct: 188 WSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGK---------TEWAAQEFEHVRLA 238
Query: 157 ----YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
+ + S +H + +QLA V L RD IAR D S +LP+
Sbjct: 239 GPPQPKPDRWRRTSQIHSLK------SPRQLAAVRELWTTRDEIARKRDISPSRILPDSA 292
Query: 213 LIEIAKQLPTTAAKLRRL 230
++ A P + LR L
Sbjct: 293 IVTAASADPKSIDTLRAL 310
>gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1]
gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1]
Length = 392
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 127/283 (44%), Gaps = 16/283 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q + + + V+D L + + +L ++ +D + +KV H A +D+ + + G +F
Sbjct: 42 IQAAAPSAEAVIDPLADDIDLSCFL-DILRDESIQKVFHAARQDVE-IFNNLGAMPKPLF 99
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A E+ + + L+ + +K + DW RPL D L YA D +L
Sbjct: 100 DTQVAGMAAGFGEQIAYDALVRQMLKIEIDKSSRFTDWARRPLSDSQLTYALADVTHLAK 159
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +++ +L + + +D +YDV EN++ L+
Sbjct: 160 LYPLLRQRLEREGRLAWVTDEMNDLTDPANYDVE---------PENAWKR---LRPRRHT 207
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
A+ LAV + WR+ A+ D+ G +L + + EIA Q PT A L RL +
Sbjct: 208 AKYLAVYRAVAAWRERTAQLRDQPRGRILKDDAIDEIATQTPTDADALDRLRSVPKGFSG 267
Query: 240 RYMGP-VLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVL 281
GP +L+ ++ ++++ + + +K ++ A E+L
Sbjct: 268 SRFGPDLLAAVREALKDPEGYAPVIEKTRQPASPAAGAVVELL 310
>gi|326384419|ref|ZP_08206099.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
gi|326196764|gb|EGD53958.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
Length = 407
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L R+ G +FDT A R+L + + +L ++ F + K + AD
Sbjct: 103 ILHAADQDLPCL-RELGFTPTTLFDTELAGRLLNIPKVNLAAMVAEFLHLGLAKGHGAAD 161
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD+ L YA D L+ + D + LS ++ + + +Y + R
Sbjct: 162 WSRRPLPDDWLNYAALDVEVLVELRDAVADALSEAGRDEWAAQ-------EFAYVLARPP 214
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ +I+ L+ +A+QLAVV L R+ +A D + G VLP+ +I
Sbjct: 215 SAPKPDRWRRTSNIHDLR----SARQLAVVRELWTAREELAALRDVAPGRVLPDSAIITA 270
Query: 217 AKQLPTTAAKLRRL 230
A P L RL
Sbjct: 271 ATANPVDGKALTRL 284
>gi|171742685|ref|ZP_02918492.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC
27678]
gi|283456244|ref|YP_003360808.1| ribonuclease D [Bifidobacterium dentium Bd1]
gi|171278299|gb|EDT45960.1| 3'-5' exonuclease [Bifidobacterium dentium ATCC 27678]
gi|283102878|gb|ADB09984.1| Ribonuclease D [Bifidobacterium dentium Bd1]
Length = 433
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 34/238 (14%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ ++FDT A+R+L + R L + HF G+ KE+ ADW RPLP + YA
Sbjct: 111 DLGMEPHHLFDTEIAARLLGMHRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYA 170
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSEN 165
D L+ + M+ +L K + + L+E KE
Sbjct: 171 ALDVELLIELEQRMRTELKRQGKRDWAEE-----------EFAYALHEGMGPRKE--HPV 217
Query: 166 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
+L I + + Q LAV L E RD +AR D + +L + ++IE AK+ P AA
Sbjct: 218 PWLRISRITEIAKDRQALAVAKALWEKRDELARRFDIAPALLLSDFSIIEAAKRKPHNAA 277
Query: 226 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 272
+ R + ++ ERY P+ +K S+ + VI Q L R E
Sbjct: 278 QFRAIRSINERVRIQSDAAQEKMFERY-APIQRKVKPSLWKS----VIQQALDMPRSE 330
>gi|90416003|ref|ZP_01223936.1| ribonuclease D [gamma proteobacterium HTCC2207]
gi|90332377|gb|EAS47574.1| ribonuclease D [gamma proteobacterium HTCC2207]
Length = 374
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 16/257 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+S + +++DT + Q+ P L + P V H D+ L + + +F
Sbjct: 46 IQLSDGEQCWLIDTPAIE-QLQP-LTALLNGPQLTLVFHSCGEDLEVLDQVLSVRPKKLF 103
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
D+ A+ ++ + S+ Y L+ + + KE +DW RPL D RYA +D YL
Sbjct: 104 DSQVAAGIVNIG-YSMGYARLVENMLQIELGKEDTRSDWLARPLSDRQKRYAADDVLYLF 162
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
IY ++ L ++S ++ L D+ R E+ + + YL + G L
Sbjct: 163 RIYKLLLELLEQQQRQSWFAEEML--------DLQRVAAERRE-ALDYYLRVKG--AWRL 211
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
+A LAV+ LCEWR+ ARA D+ +++ + L+E+A PT ++L ++ +
Sbjct: 212 DALSLAVLKRLCEWRERAARALDKPRSHIVKDNVLLELANNKPTHMSQLHQIDDWYSRSV 271
Query: 239 ERYMGPVLSIIKNSMQN 255
+R+ VL I N N
Sbjct: 272 KRFGEQVLQEIANVDHN 288
>gi|444911412|ref|ZP_21231587.1| Ribonuclease D [Cystobacter fuscus DSM 2262]
gi|444718170|gb|ELW58986.1| Ribonuclease D [Cystobacter fuscus DSM 2262]
Length = 388
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 115/265 (43%), Gaps = 17/265 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T T+ F+ DTL+ V L V +DP + K H A D+ +L + G+ + +F
Sbjct: 49 LQLATDTDVFLFDTLQPGVHPS-LLARVMEDPERTKFFHAASGDLPFLA-EAGVRVRGLF 106
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A+ +L + L L GV KE+Q +D+ +RPLP M Y D YL
Sbjct: 107 DTHRAATLLGWPKVGLADLARERLGVELPKEHQQSDFALRPLPPGMRDYIANDVRYL--- 163
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
++L +E L EV D R E + L GL
Sbjct: 164 -----VELGRQVREECRKADVLEEVL---LDCQRMCDEAAARPDVGAEFKPKLPKGGLTP 215
Query: 181 QQL----AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 236
QL + L + R A A++ G L N + +IA + P +L R + +
Sbjct: 216 AQLLLANTIAQALHKKRLEWAEAENVPMGRTLSNMAITDIAIKPPGNPKELARAAGVRGA 275
Query: 237 YIERYMGPVLSIIKNSMQNAANFEV 261
++ + V+S+++ ++ + E+
Sbjct: 276 FVRAHGEEVISLVRELLEKSRQGEL 300
>gi|367467634|ref|ZP_09467558.1| Ribonuclease D [Patulibacter sp. I11]
gi|365817309|gb|EHN12283.1| Ribonuclease D [Patulibacter sp. I11]
Length = 388
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 15/208 (7%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 82
L EV DP + V+H A +D+ L+R + + +FDT A+ L R + Y LL
Sbjct: 68 LAEVLADPEIEIVLHAARQDVALLKRTWKTEVRGVFDTQVAAGFAGL-RAQMGYDALLRE 126
Query: 83 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 142
V K W RPL +E RYA ED +LL + + L + ES + +
Sbjct: 127 MLRVKLQKSASFTRWEQRPLSEEQRRYAAEDVQHLLQ----LAVALQNRLVESGRLEWAV 182
Query: 143 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 202
E CR L E + + L + L+ Q AV L EWR+ A D
Sbjct: 183 EE--------CRALEEVHDSRDPADLFPRLPRIDRLDPAQRAVAYALLEWREETAEQVDR 234
Query: 203 STGYVLPNRTLIEIAKQLPTTAAKLRRL 230
VL ++TL+E+AK+ PT+ +L+++
Sbjct: 235 PPSTVLQDQTLVELAKRRPTSRERLKQI 262
>gi|429758726|ref|ZP_19291239.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 181 str. F0379]
gi|429172940|gb|EKY14477.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 181 str. F0379]
Length = 412
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 20/254 (7%)
Query: 3 ISTRTED---FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+ R ED F++DT L P+L + ++H A +D+ L R+ G+ + +
Sbjct: 70 LQLRREDVGSFLIDTAAL-----PHLECLQASMNSTWILHDASQDLPNL-RELGLEIPAL 123
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT ASR+L + L + G+ K++Q ++W VRPLP + LRYA D L
Sbjct: 124 FDTQVASRLLGMTHFGLSAVCEQVLGLTLVKDHQASNWSVRPLPKDWLRYAVLDVELLTA 183
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D ++ +L + + S + + + L +K + + I G+ G +
Sbjct: 184 LKDSLEERLDDLGRTSWAQ-----QEFSHIAEAAPPLPKK-----DRWRSISGI-GKLTS 232
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+ LA+ L RD IAR D + G ++ N +I A++ P T L + + +
Sbjct: 233 KRALAIARELWIERDAIAREIDLAPGRLVRNSGIIHAAQRPPRTRHNLLSIAEFRSPQAR 292
Query: 240 RYMGPVLSIIKNSM 253
RY L + ++
Sbjct: 293 RYAQHFLDAVTRAL 306
>gi|306822549|ref|ZP_07455927.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
gi|304554094|gb|EFM42003.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
Length = 433
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 34/238 (14%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ ++FDT A+R+L + R L + HF G+ KE+ ADW RPLP + YA
Sbjct: 111 DLGMEPHHLFDTEIAARLLGMHRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYA 170
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSEN 165
D L+ + M+ +L K + + L+E KE
Sbjct: 171 ALDVELLIELEQRMRTELKRQGKRDWAEE-----------EFTYALHEGMGPRKE--HPV 217
Query: 166 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
+L I + + Q LAV L E RD +AR D + +L + ++IE AK+ P AA
Sbjct: 218 PWLRISRITEIAKDRQALAVAKALWEKRDELARRFDIAPALLLSDFSIIEAAKRKPHNAA 277
Query: 226 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 272
+ R + ++ ERY P+ +K S+ + VI Q L R E
Sbjct: 278 QFRAIRSINERVRIQADAAQEKMFERY-APIQRKVKPSLWKS----VIQQALDMPRSE 330
>gi|309801464|ref|ZP_07695591.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
gi|308221979|gb|EFO78264.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
Length = 430
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 34/238 (14%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ ++FDT A+R+L + R L + HF G+ KE+ ADW RPLP + YA
Sbjct: 108 DLGMEPHHLFDTEIAARLLGMHRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSEN 165
D L+ + M+ +L K + + L+E KE
Sbjct: 168 ALDVELLIELEQRMRTELKRQGKRDWAEE-----------EFTYALHEGMGPRKE--HPV 214
Query: 166 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 225
+L I + + Q LAV L E RD +AR D + +L + ++IE AK+ P AA
Sbjct: 215 PWLRISRITEIAKDRQALAVAKALWEKRDELARRFDIAPALLLSDFSIIEAAKRKPHNAA 274
Query: 226 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 272
+ R + ++ ERY P+ +K S+ + VI Q L R E
Sbjct: 275 QFRAIRSINERVRIQADAAQEKMFERY-APIQRKVKPSLWKS----VIQQALDMPRSE 327
>gi|254786713|ref|YP_003074142.1| ribonuclease D [Teredinibacter turnerae T7901]
gi|237686111|gb|ACR13375.1| ribonuclease D [Teredinibacter turnerae T7901]
Length = 393
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 12/207 (5%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHF 83
L E+ ++P KV+H D+ R GI +M DT AS + + L+H
Sbjct: 73 LAELMENPGVLKVLHSCSEDLEVFHRFLGIVPKHMLDTQIASALCGYGFSVGFGKLVHAV 132
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 143
G KE +DW RPL + YA D YL + I+ +KL ++ + LT
Sbjct: 133 LGEELPKEETRSDWLHRPLSSAQIDYAAIDVEYLYKLASILVLKLKNLGR--------LT 184
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
V + + RQ + + + +NS I Q L+ +QLA++ L +WR+ +A+ D
Sbjct: 185 WVAEDCEAMLRQFADNQAV-DNSDARIK--QAWRLSQRQLAILKKLAQWREEVAQRRDVP 241
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKLRRL 230
V+ +L+++A++ P A+LR+L
Sbjct: 242 RNRVIKEHSLLDLAQRTPDHVAQLRKL 268
>gi|311064600|ref|YP_003971325.1| ribonuclease D [Bifidobacterium bifidum PRL2010]
gi|310866919|gb|ADP36288.1| Ribonuclease D [Bifidobacterium bifidum PRL2010]
Length = 428
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + M+ +L + K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKAQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFRMI 279
>gi|365824673|ref|ZP_09366747.1| hypothetical protein HMPREF0045_00383 [Actinomyces graevenitzii
C83]
gi|365259733|gb|EHM89718.1| hypothetical protein HMPREF0045_00383 [Actinomyces graevenitzii
C83]
Length = 424
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 32/226 (14%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L + G+ +FDT A+R+L E+ L +L+ G + KE+ AD
Sbjct: 94 ILHAADQDMPCLAK-LGMRPDALFDTELAARILGREKRGLGHLIEDTLGWHLAKEHSAAD 152
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIM--------KIKLSSMPKESENSDTPLTEVYKR 148
W VRPLP L YA D L+ + + K++ + E E + P E
Sbjct: 153 WSVRPLPTSWLNYAALDVELLIDLRSALLTELELAGKLQWALAEFEFERTAPPRPE---- 208
Query: 149 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 208
+ + H++G G A+ A++ L R+ IA+A D VL
Sbjct: 209 --------------RVDPWRHMHG-AGRVTTARGRAILRNLWLTREEIAKAQDLPPVKVL 253
Query: 209 PNRTLIEIAKQLPTTAAKLR--RLLKSK--HSYIERYMGPVLSIIK 250
P+ ++ +AK++P + +LR R + S+ +Y+E++ V S +K
Sbjct: 254 PHYAIVAVAKRMPNSRKQLRAIREMSSRDARAYMEQWWKAVDSAMK 299
>gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1]
gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1]
Length = 389
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 17/258 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T T+ F+ DTL V L + DP + K H A D+ +L + GI + +F
Sbjct: 49 LQVATPTDIFLFDTLAPGVDAS-LLAPLMADPERTKYFHAAQGDLQFLA-EAGIRVRGLF 106
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A+ +L + L + GV KE+Q +D+ +RPLP EM Y D YL
Sbjct: 107 DTHRAATLLGWPKVGLADIARERLGVELPKEHQQSDFSLRPLPPEMREYIANDVRYL--- 163
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+L +E+ + L EV +C + + + + L +GL+
Sbjct: 164 -----CELGRQVREACRTAGILEEVLLDCDRMCEEAVARPDVGADFK---PKLPRSGLSP 215
Query: 181 QQL----AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 236
QL AV L R A + G +L N + +IA +LP +L R +
Sbjct: 216 VQLTLAHAVAHALHTKRLEWAEKANVPMGRMLSNMAIGDIAVKLPANPKELARAAGVRGG 275
Query: 237 YIERYMGPVLSIIKNSMQ 254
++ + L+I++ ++
Sbjct: 276 FVREHGEETLAIVRELLE 293
>gi|111023812|ref|YP_706784.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|397737347|ref|ZP_10504019.1| 3'-5' exonuclease family protein [Rhodococcus sp. JVH1]
gi|110823342|gb|ABG98626.1| probable ribonuclease III [Rhodococcus jostii RHA1]
gi|396926786|gb|EJI94023.1| 3'-5' exonuclease family protein [Rhodococcus sp. JVH1]
Length = 429
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 108 ILHSADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 166
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE----SENSDTPLTEVYKRSYDV 152
W RPLPD L YA D L+ + ++M +L K E L K D
Sbjct: 167 WSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHIRLAGPPKPKADR 226
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R+ HI L+ +QLA L + R+ +AR D S VLP+
Sbjct: 227 WRRTS-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDAA 271
Query: 213 LIEIAKQLPTTAAKLRRL 230
+I+ A + P + LR L
Sbjct: 272 IIDAATKDPRSIEALRAL 289
>gi|33152538|ref|NP_873891.1| ribonuclease D [Haemophilus ducreyi 35000HP]
gi|33148762|gb|AAP96280.1| ribonuclease D [Haemophilus ducreyi 35000HP]
Length = 373
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 15/207 (7%)
Query: 23 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLH 81
P++ ++ +P KV+H D+ Q F L + DT + L + L++
Sbjct: 69 PFI-DLLANPNIVKVLHACSEDLEIFQHQFNQALTPLIDTQIMAAFSGLGLSIGFAKLVN 127
Query: 82 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM-PKESENSDT 140
H+ + +K DW RPL + L+YA D +YLL IY ++ +L+ +E+ N +
Sbjct: 128 HYLNIELDKGASRTDWLARPLTETQLQYAAADVYYLLPIYQKLQAELAQTNWQEAVNQEC 187
Query: 141 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
L V KR+ + L + E SY L QQLA++ L +WR AR
Sbjct: 188 QLL-VNKRN----KTLELNDAYKEISY-------AWTLTRQQLAILKLLAKWRIEEARKR 235
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKL 227
D + +V+ ++LIEIAK P ++L
Sbjct: 236 DLALNFVIKEQSLIEIAKSQPKHTSQL 262
>gi|433603682|ref|YP_007036051.1| 3'-5' exonuclease [Saccharothrix espanaensis DSM 44229]
gi|407881535|emb|CCH29178.1| 3'-5' exonuclease [Saccharothrix espanaensis DSM 44229]
Length = 428
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 100/234 (42%), Gaps = 38/234 (16%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + + +FDT A R+ ER +L L+ G K + AD
Sbjct: 103 VLHAASQDLPCLA-ELDLRPSVLFDTELAGRLAGFERVALGTLVERLLGYRLEKGHGAAD 161
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESENSDT-----PLTEV 145
W RPLP + L YA D L+ + D+++ +L K E E + T P E
Sbjct: 162 WSRRPLPADWLNYAALDVELLVELRDVLEAELKKQGKLEWALEEFEAARTAPLPKPRAEP 221
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++R+ + R + +QLA V L E RD +AR D + G
Sbjct: 222 WRRTSGIHRI----------------------RSPRQLAAVRSLWETRDALARERDIAPG 259
Query: 206 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANF 259
VLP+ L+E A + P A L L + R ++++ ++Q AA
Sbjct: 260 RVLPDSALVEAAVRNPPDEAGLLALPVFRGRAQRR----MVAVWLGALQRAAAL 309
>gi|291454868|ref|ZP_06594258.1| ribonuclease D [Streptomyces albus J1074]
gi|291357817|gb|EFE84719.1| ribonuclease D [Streptomyces albus J1074]
Length = 348
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
L EV +D + ++H A +D+ L RD G+ +FDT A R+ R L ++ +
Sbjct: 111 LGEVVED--AEWLLHAATQDLPCL-RDIGMVPQRLFDTELAGRLAGFARVGLGAMVENVL 167
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
G + K + DW RPLP+ LRYA D L + D ++ +L+ K +
Sbjct: 168 GYSLEKGHSAVDWSTRPLPEPWLRYAALDVELLADLRDALEEELAGQGKLDWAH-----Q 222
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 204
+ K+ S +H +QLAVV L RD IA+ D S
Sbjct: 223 EFDAIASAPPAPPRKDPWRRTSGMHKV------RRRRQLAVVRELWNARDKIAQRRDISP 276
Query: 205 GYVLPNRTLIEIAKQLPTTAAKLRRL 230
G VLP+ ++E A LP L RL
Sbjct: 277 GKVLPDAAIVEAALALPVDVQALGRL 302
>gi|417943263|ref|ZP_12586515.1| Ribonuclease D [Bifidobacterium breve CECT 7263]
gi|376165800|gb|EHS84740.1| Ribonuclease D [Bifidobacterium breve CECT 7263]
Length = 433
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 172 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 224 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 283
>gi|359148168|ref|ZP_09181389.1| ribonuclease D, partial [Streptomyces sp. S4]
Length = 333
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
L EV +D + ++H A +D+ L RD G+ +FDT A R+ R L ++ +
Sbjct: 111 LGEVVED--AEWLLHAATQDLPCL-RDIGMVPQRLFDTELAGRLAGFARVGLGAMVENVL 167
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
G + K + DW RPLP+ LRYA D L + D ++ +L+ K +
Sbjct: 168 GYSLEKGHSAVDWSTRPLPEPWLRYAALDVELLADLRDALEEELAGQGKLDWAH-----Q 222
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 204
+ K+ S +H +QLAVV L RD IA+ D S
Sbjct: 223 EFDAIASAPPAPPRKDPWRRTSGMHKV------RRRRQLAVVRELWNARDKIAQRRDISP 276
Query: 205 GYVLPNRTLIEIAKQLPTTAAKLRRL 230
G VLP+ ++E A LP L RL
Sbjct: 277 GKVLPDAAIVEAALALPVDVQALGRL 302
>gi|291456557|ref|ZP_06595947.1| ribonuclease D [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|291381834|gb|EFE89352.1| ribonuclease D [Bifidobacterium breve DSM 20213 = JCM 1192]
Length = 433
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 172 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 224 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 283
>gi|152965548|ref|YP_001361332.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
gi|151360065|gb|ABS03068.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
Length = 427
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A++D+ L + G+ +FDT SR+ L R L ++ G+ KE+ D
Sbjct: 104 VLHAANQDLPCLA-EVGMRPTRLFDTELGSRIAGLPRVGLGAVVEELLGLRLAKEHSAVD 162
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ L YA D L+ + D + +L++ K E + D +
Sbjct: 163 WSTRPLPEPWLTYAALDVEVLVQVRDALAERLAAQGKLEWA-----LEEFAAVADAPAPV 217
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E S LH A + +QLAVV L + RD AR D S G +LP+ ++
Sbjct: 218 PPAEPWRRVSGLH------AVRSRRQLAVVRALWQARDEEARRRDTSPGRLLPDSAIVAA 271
Query: 217 AKQLPTT 223
A+ P T
Sbjct: 272 ARATPRT 278
>gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
Length = 379
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 17/258 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T T+ F+ DTL V L + DP + K H A D+ +L + GI + +F
Sbjct: 39 LQVATPTDIFLFDTLAPGVDAS-LLAPLMADPERTKYFHAAQGDLQFLA-EAGIRVRGLF 96
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT +A+ +L + L + GV KE+Q +D+ +RPLP EM Y D YL
Sbjct: 97 DTHRAATLLGWPKVGLADIARERLGVELPKEHQQSDFSLRPLPPEMREYIANDVRYL--- 153
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
+L +E+ + L EV +C + + + + L +GL+
Sbjct: 154 -----CELGRQVREACRTAGILEEVLLDCDRMCEEAVARPDVGADFK---PKLPRSGLSP 205
Query: 181 QQL----AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 236
QL AV L R A + G +L N + +IA +LP +L R +
Sbjct: 206 VQLTLAHAVAHALHTKRLEWAEKANVPMGRMLSNMAIGDIAVKLPANPKELARAAGVRGG 265
Query: 237 YIERYMGPVLSIIKNSMQ 254
++ + L+I++ ++
Sbjct: 266 FVREHGEETLAIVRELLE 283
>gi|421734277|ref|ZP_16173355.1| ribonuclease D [Bifidobacterium bifidum LMG 13195]
gi|407077784|gb|EKE50612.1| ribonuclease D [Bifidobacterium bifidum LMG 13195]
Length = 428
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + M+ +L + K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKAQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNARAFRMI 279
>gi|392416035|ref|YP_006452640.1| ribonuclease D [Mycobacterium chubuense NBB4]
gi|390615811|gb|AFM16961.1| ribonuclease D [Mycobacterium chubuense NBB4]
Length = 435
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G+ +++DT A R+ +R +L ++ G+ K + AD
Sbjct: 126 VLHAADQDLPCLA-EIGMRPTSLYDTELAGRLANYDRVNLAAMVQRLLGLQLTKGHGAAD 184
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP + L YA D L + D + L+ K TE ++ ++ R
Sbjct: 185 WSKRPLPHDWLNYAALDVEVLAELRDAIDAVLAEQGK---------TEWARQEFEFLRT- 234
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+E + + G+ + + LA V L RD IAR D + G +LP+ ++
Sbjct: 235 FEGSPTRRDRWRRTSGIHKV-RDPRALAAVRELWMTRDQIARRRDIAPGRILPDSAIVNA 293
Query: 217 AKQLPTTAAKLRRL 230
A P T KL L
Sbjct: 294 ATTDPDTVEKLTAL 307
>gi|295835905|ref|ZP_06822838.1| ribonuclease D [Streptomyces sp. SPB74]
gi|295825772|gb|EFG64472.1| ribonuclease D [Streptomyces sp. SPB74]
Length = 430
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Query: 38 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 97
+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + DW
Sbjct: 121 LHAATQDLPCL-REIGMVPHTLFDTELAGRLAGFPRVGLGAMVENVLGYTLEKGHSAVDW 179
Query: 98 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 157
RPLP+ LRYA D L+ + D ++ +L K E +
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA-----LEEFDAIATAPPPAP 234
Query: 158 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
K+ S +H +QLAVV L RD IAR D S G VLP+ ++E A
Sbjct: 235 RKDPWRRTSGMHRV------RRRRQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAA 288
Query: 218 KQLPT 222
+P
Sbjct: 289 LAVPV 293
>gi|339479014|gb|ABE95475.1| Ribonuclease D [Bifidobacterium breve UCC2003]
Length = 433
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 172 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 224 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 283
>gi|400974698|ref|ZP_10801929.1| ribonuclease [Salinibacterium sp. PAMC 21357]
Length = 418
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 34/225 (15%)
Query: 34 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
++ ++H A +D+ L R+ G++ +FDT +R+ L R L ++ H G++ KE+
Sbjct: 96 EEWILHAATQDLTCL-REVGLHPSRLFDTELGARLAGLPRVGLGTVVEHLLGIHLAKEHS 154
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 153
+ADW RPLP L YA D L+ + + + L S K +D+
Sbjct: 155 SADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADK----------------HDIA 198
Query: 154 RQLYEKELLSENSYLH---------IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 204
+Q ++ L + S + ++ L+G + LA+ L RD A+ D +
Sbjct: 199 QQEFDSVLSRDLSNVRAEPWRRLSGVHSLRG----GKNLAIARELWLARDAYAQEVDTAP 254
Query: 205 GYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 245
G ++P+ L+ A+ LP + +L + ++ + I+R+ +
Sbjct: 255 GRLVPDSALLAAARFLPESKRQLSAMKEFSGRASRTQIDRWWDAI 299
>gi|389865548|ref|YP_006367789.1| 3'-5' exonuclease [Modestobacter marinus]
gi|388487752|emb|CCH89314.1| 3'-5' exonuclease [Modestobacter marinus]
Length = 435
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 24/197 (12%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A++D+ L + G+ +FDT A+R+ L R L ++ G++ K + AD
Sbjct: 126 VLHAANQDLPCLA-ELGLVPTRLFDTELAARLAGLPRVGLGAVVESLLGLSLQKGHSAAD 184
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP++ L YA D L+ + D + L E T + RQ
Sbjct: 185 WSTRPLPEDWLVYAALDVEVLVELRDALAAIL------DEQGKT----------EWARQE 228
Query: 157 YEKELLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+E L + + + G+ G + +QL ++ L + RD +AR D + G VLP+
Sbjct: 229 FEAILAAGPPAPKVDPWRKTSGMHGLR-SRRQLGMLRALWQARDELARRRDIAPGRVLPD 287
Query: 211 RTLIEIAKQLPTTAAKL 227
++ + PTT A L
Sbjct: 288 TAMVSAVQADPTTEAAL 304
>gi|384100730|ref|ZP_10001787.1| ribonuclease D [Rhodococcus imtechensis RKJ300]
gi|383841636|gb|EID80913.1| ribonuclease D [Rhodococcus imtechensis RKJ300]
Length = 429
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 108 ILHSADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 166
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE----SENSDTPLTEVYKRSYDV 152
W RPLPD L YA D L+ + ++M +L K E L K D
Sbjct: 167 WSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHIRLAGPPKPKADR 226
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R+ HI L+ +QLA L + R+ +AR D S VLP+
Sbjct: 227 WRRTS-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDSA 271
Query: 213 LIEIAKQLPTTAAKLRRL 230
+I+ A + P LR L
Sbjct: 272 IIDAATKDPRGIEALRAL 289
>gi|257056403|ref|YP_003134235.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
gi|256586275|gb|ACU97408.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
Length = 413
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + LR P L EV + V+H A +D+ L + G++ ++FDT A R+
Sbjct: 79 FLIDPIPLRDHFTP-LAEVMNQ--VEWVLHAASQDLPCLA-ELGLHPPSLFDTELAGRLA 134
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+R +L L+ G K + ADW RPLP + L YA D LL + + ++ +L+
Sbjct: 135 GYQRVALGTLVESLLGYQLEKGHSAADWSRRPLPLDWLNYAALDVELLLPLREKLEEELA 194
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
+ K E ++ ++ R +E + G+ A+ LA V L
Sbjct: 195 ASGK---------LEWARQEFEAVRTAKPPAPRAE-PWRRTSGIHKVR-TARGLAAVRAL 243
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
E RD +AR D + G +LP+ +I T+A L +L
Sbjct: 244 WEARDELARRRDRAPGRILPDSAIINAVLADARTSADLEKL 284
>gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
Length = 409
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 14/252 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ T+ +D L + + P L + +D + KV H ++D+ + G ++
Sbjct: 69 IQVGDGTKAVAIDPLAKNLNLEP-LWSLMRDESIIKVFHAGNQDMEIFLNEMGGLPSPVY 127
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A V ++ + L+ G N +K + DW RPL D + YA +D YL
Sbjct: 128 DTQIAGLVCGHGDQIGYDSLVKSILGKNVDKTSRFTDWSKRPLTDRQISYALDDVIYLAQ 187
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
IY IM K++ SEN L E +K+ D + + EN++ I + L
Sbjct: 188 IYPIMLDKIA-----SENRTNWLDEEFKKFSDPATYVTK----PENAWKRI---KIRHLK 235
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
A L + L WR++ A+ + V+ + TLI++A P T + ++
Sbjct: 236 APALMRLMRLAAWREIEAQNRNVPRNRVIRDETLIDLAGTAPNTINEFSKIRNFPGGTDG 295
Query: 240 RYMGPVLSIIKN 251
+++ PVL +I++
Sbjct: 296 KFVKPVLKVIQD 307
>gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae
bacterium]
Length = 386
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 135/328 (41%), Gaps = 61/328 (18%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHF 83
L E+ KDPTK KV H A +D+ L R G + +FDT A+ ++ + S +++
Sbjct: 63 LLELLKDPTKVKVFHAARQDLEILVRFCGQVIPPIFDTQIAAALVGWGTQISFAKIVYKA 122
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESEN 137
G +K DW RPL D + YA +D YL+ +Y+ + +L M + E
Sbjct: 123 LGKKIHKSETYTDWCRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGEVNA 182
Query: 138 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 197
+ P T Y ++ I L+ L + LAV+ + WR+ A
Sbjct: 183 WEDPKTFALPDPY--------------QRFMKIKNLR--SLRPRNLAVLQEIAAWREGEA 226
Query: 198 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 257
D ++ + TL+EIA++ P A L + + + G +LS I+ +M+
Sbjct: 227 VKRDCLAKAIIRDETLLEIARKAPRDAKTLSGIRGFYQKELNKGGGSILSAIERAME--- 283
Query: 258 NFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNV-GRESVDGVDALVGTTMPHPPAY 316
L S +++P G + GV+ L+ AY
Sbjct: 284 -------------------------LPESDLVELPESNGHATTRGVEELLS-------AY 311
Query: 317 TQLKQEPPKVGSSVAELDRNGLGSF-AH 343
Q++ E K+ SV DR + SF AH
Sbjct: 312 VQIRSEELKIEPSVLA-DRKQIHSFVAH 338
>gi|419967866|ref|ZP_14483740.1| ribonuclease D [Rhodococcus opacus M213]
gi|414566760|gb|EKT77579.1| ribonuclease D [Rhodococcus opacus M213]
Length = 429
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 108 ILHSADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 166
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE----SENSDTPLTEVYKRSYDV 152
W RPLPD L YA D L+ + ++M +L K E L K D
Sbjct: 167 WSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHIRLAGPPKPKADR 226
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R+ HI L+ +QLA L + R+ +AR D S VLP+
Sbjct: 227 WRRTS-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDSA 271
Query: 213 LIEIAKQLPTTAAKLRRL 230
+I+ A + P LR L
Sbjct: 272 IIDAATKDPRGIEALRAL 289
>gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2]
gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2]
Length = 377
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 20/234 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T +VD L++ + P L + D +K+ H +D+ L + +F
Sbjct: 41 VQVATPEVSALVDPLEIE-DLSP-LAALMADEGTRKIFHACSQDMEVLLNALDVLPNPIF 98
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L ER + Y L+ FCGV+ K DW RPL E + YA +D YL+
Sbjct: 99 DTQVAAAFLG-ERVQMSYDGLVKAFCGVSLPKTASLTDWSHRPLTAEQMDYAEDDVRYLI 157
Query: 119 YIYDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
Y++M +L + S D PL + +D R+L K + S
Sbjct: 158 CAYEVMAERLEQRGRMSWALDEMRPLADESHYRHD--RRLAYKRVKRIGS---------- 205
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+QL V L WR+ A + D +++ + L+ +AK+ P + A+LR++
Sbjct: 206 -CTRRQLGVARELAAWREGRAESHDIPRKWIMSDEVLLALAKRAPHSVAELRQV 258
>gi|440701120|ref|ZP_20883331.1| putative ribonuclease D [Streptomyces turgidiscabies Car8]
gi|440276236|gb|ELP64529.1| putative ribonuclease D [Streptomyces turgidiscabies Car8]
Length = 429
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMIPTQLFDTELAGRLAGFPRVGLGAMVEGVLGFVLEKGHSAVD 176
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +QLAVV L E RD IA+ D S G VL + ++E
Sbjct: 228 PPPE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWETRDRIAQRRDVSPGKVLSDAAIVEA 285
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
A +P L L H R +
Sbjct: 286 ALAVPVNVNALAALTGFGHRMGRRQL 311
>gi|378717672|ref|YP_005282561.1| putative ribonuclease D [Gordonia polyisoprenivorans VH2]
gi|375752375|gb|AFA73195.1| putative ribonuclease D [Gordonia polyisoprenivorans VH2]
Length = 428
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L R+ G + +FDT A R+L L + +L ++ F G K + AD
Sbjct: 107 ILHAADQDLPCL-RELGFHATTLFDTELAGRLLGLTKVNLAAMVEQFLGFGLQKGHGAAD 165
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP E L YA D L+ + D M L +++ SD E +Y + R
Sbjct: 166 WSKRPLPAEWLNYAALDVEVLIELRDAMDAAL----RDAGKSDWAAEEF---AYVLRRPP 218
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+I+ ++ A+ LA V L R+ IA+ D + G VLP+
Sbjct: 219 SPPRTDRWRRTANIHTVK----TARGLAAVRELWSAREEIAQRRDVAPGRVLPD 268
>gi|311739578|ref|ZP_07713413.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305394|gb|EFQ81462.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
Length = 414
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 24/201 (11%)
Query: 37 VMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
++H A D+ WL G++ ++FDT A+R+ ER +L ++ V K Y
Sbjct: 90 IIHAAHSDLPCLGWL----GLFPGSIFDTELAARLAGFERPNLGTMVGELFDVELEKGYG 145
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE----VYKRS 149
+ADW L +E+ YA D LL + D ++ L+ E + D L E V + S
Sbjct: 146 DADWSTPQLSEELKAYAALDVELLLELADALRDILA----EQDKMDWALEEFSAIVQEHS 201
Query: 150 YDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 209
D Q + L S L + +QLA L RD IAR D + G VL
Sbjct: 202 GDFAPQPHTWRDLKGISSLR---------SGRQLAAARELWFKRDAIARRTDTAPGRVLA 252
Query: 210 NRTLIEIAKQLPTTAAKLRRL 230
N+TL+EIA+ LPTTA +L R+
Sbjct: 253 NKTLVEIARTLPTTAGELARV 273
>gi|384197155|ref|YP_005582899.1| 3'-5' exonuclease [Bifidobacterium breve ACS-071-V-Sch8b]
gi|333110648|gb|AEF27664.1| 3'-5' exonuclease [Bifidobacterium breve ACS-071-V-Sch8b]
Length = 415
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 94 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 153
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 154 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 205
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 206 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 265
>gi|255325116|ref|ZP_05366222.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
gi|255297681|gb|EET76992.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
Length = 414
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 95/201 (47%), Gaps = 24/201 (11%)
Query: 37 VMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
++H A D+ WL G++ ++FDT A+R+ ER +L ++ V K Y
Sbjct: 90 IIHAAHSDLPCLGWL----GLFPGSIFDTELAARLAGFERPNLGTMVAELFDVELEKGYG 145
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE----VYKRS 149
+ADW L +E+ YA D LL + D ++ L+ E + D L E V + S
Sbjct: 146 DADWSTPQLSEELKAYAALDVELLLELADALRDILA----EQDKMDWALEEFSAIVQEHS 201
Query: 150 YDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 209
D Q + L S L + QLA L RD IAR D + G VL
Sbjct: 202 GDFAPQPHTWRDLKGISSLR---------SGSQLAAARELWFKRDAIARRTDTAPGRVLA 252
Query: 210 NRTLIEIAKQLPTTAAKLRRL 230
N+TL+EIA+ LPTTA +L R+
Sbjct: 253 NKTLVEIARTLPTTAGELARV 273
>gi|345002758|ref|YP_004805612.1| 3'-5' exonuclease [Streptomyces sp. SirexAA-E]
gi|344318384|gb|AEN13072.1| 3'-5' exonuclease [Streptomyces sp. SirexAA-E]
Length = 424
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L RD G+ ++FDT A R+ R L ++ + G K + D
Sbjct: 114 ILHAATQDLPCL-RDIGMVPTSLFDTELAGRLAGFPRVGLGAIVENLLGYALEKGHSAVD 172
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD LRYA D L+ + D ++ +L E + E +
Sbjct: 173 WSTRPLPDPWLRYAALDVELLVDLRDALEAEL-----ERQGKLEWALEEFDAIASAPPAP 227
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
K+ S +H +Q+AVV L RD +A+ D S G VL + +IE
Sbjct: 228 PRKDPWRRTSGMHKV------RRRRQIAVVRELWTARDQVAQRRDISPGKVLGDAAIIEA 281
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
A +P A L L H R +
Sbjct: 282 ALAMPVNAHALTALPGFGHRMGRRQL 307
>gi|359767832|ref|ZP_09271614.1| putative ribonuclease [Gordonia polyisoprenivorans NBRC 16320]
gi|359314748|dbj|GAB24447.1| putative ribonuclease [Gordonia polyisoprenivorans NBRC 16320]
Length = 428
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L R+ G + +FDT A R+L L + +L ++ F G K + AD
Sbjct: 107 ILHAADQDLPCL-RELGFHATTLFDTELAGRLLGLTKVNLAAMVEQFLGFGLQKGHGAAD 165
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP E L YA D L+ + D M L +++ SD E +Y + R
Sbjct: 166 WSKRPLPAEWLNYAALDVEVLIELRDAMDAAL----RDAGKSDWAAEEF---AYVLRRPP 218
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+I+ ++ A+ LA V L R+ IA+ D + G VLP+
Sbjct: 219 SPPRTDRWRRTANIHTVK----TARGLAAVRELWSAREEIAQRRDVAPGRVLPD 268
>gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
Length = 392
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 27/237 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q +T + +D L+L +Q L +F+DP KV H A +D+ L R+ G +F
Sbjct: 45 VQAATLDQLACIDPLRLDIQ---QLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVF 101
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ +L E+ L+ + +K DW RPL E +RYA +D +L
Sbjct: 102 DTQIAASMLGYGEQVGYANLVKTVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLAT 161
Query: 120 IYDIMKIKLSSMPK------ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 173
+++ + +L + + E E P LYE + E S+ + G+
Sbjct: 162 LFNRLLHELDTHDRMHWLRPEMEALSNP-------------ALYEPD--PEQSWQRVSGV 206
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ L ++ V+ + WR+ A++ + +VL + L++IA++ P A LR L
Sbjct: 207 K--RLKPKERGVLKCVAAWRERTAQSSNRPRRWVLSDDLLLDIARRTPADAQGLREL 261
>gi|302557678|ref|ZP_07310020.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
gi|302475296|gb|EFL38389.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
Length = 430
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMVPSRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 176
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K + ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LDWARQEFDAIASA 227
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +Q+AVV L E RD IAR D S G VL + ++E
Sbjct: 228 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWETRDRIARRRDVSPGKVLSDAAIVEA 285
Query: 217 AKQLPT 222
A LP
Sbjct: 286 ALALPA 291
>gi|385652990|ref|ZP_10047543.1| ribonuclease D [Leucobacter chromiiresistens JG 31]
Length = 396
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 16/214 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
+ H A +D+ L G+ +FDT A+R+L ER L ++ G+ K + AD
Sbjct: 87 IFHAASQDLPCLA-SIGLVPSRIFDTELAARLLGFERVGLGAIVEMLLGIALEKAHSAAD 145
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP E L YA D L + ++ +L K TE + ++ R
Sbjct: 146 WSQRPLPAEWLEYAALDVVLLPELRSVIAEQLDEQGK---------TEFAAQEFEAVRLR 196
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
EK E + + G A + LA+ L E RD +AR D + G ++P+ +++
Sbjct: 197 PEKP-RPEEPWRKLSG-SHALKTPRALALARELWEARDALARERDTAPGRLIPDSSIVAA 254
Query: 217 AKQLPTTAAKLRRLL----KSKHSYIERYMGPVL 246
+ P + L RL ++ S ++R+ +L
Sbjct: 255 SIANPRSPGDLARLRDFKGRASRSELKRWWAAIL 288
>gi|333023774|ref|ZP_08451838.1| putative ribonuclease [Streptomyces sp. Tu6071]
gi|332743626|gb|EGJ74067.1| putative ribonuclease [Streptomyces sp. Tu6071]
Length = 431
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 38 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 97
+H A +D+ L R+ G+ ++FDT A R+ R L ++ + G K + DW
Sbjct: 121 LHAATQDLPCL-REIGMVPHSLFDTELAGRLAGFPRVGLGAMVENVLGYTLEKGHSAVDW 179
Query: 98 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 157
RPLP+ LRYA D L+ + D ++ +L E + E +
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKEL-----ERQGKLEWALEEFDAIASAPPPAP 234
Query: 158 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
K+ S +H + +QLAVV L RD IAR D S G VLP+ ++E A
Sbjct: 235 RKDPWRRTSGMHRVRRR------RQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAA 288
Query: 218 KQLPTTAAKL 227
+P L
Sbjct: 289 LAVPVNVHAL 298
>gi|89274974|gb|ABD65937.1| ribonuclease D [Streptomyces fungicidicus]
Length = 430
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMVPSRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 176
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K + ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LDWARQEFDAIASA 227
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +Q+AVV L E RD IAR D S G VL + ++E
Sbjct: 228 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWETRDRIARRRDVSPGKVLSDAAIVEA 285
Query: 217 AKQLPT 222
A LP
Sbjct: 286 ALALPA 291
>gi|254294269|ref|YP_003060292.1| ribonuclease D [Hirschia baltica ATCC 49814]
gi|254042800|gb|ACT59595.1| ribonuclease D [Hirschia baltica ATCC 49814]
Length = 390
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q +T D ++D L + + P+L ++ D ++ KV H A +D+ + G +F
Sbjct: 50 IQAATLEFDCLIDPLSPNIDLAPFL-DLMADTSRVKVFHAARQDMEIFTKLIGTPPAPIF 108
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
D+ A+ L + S E L+ +K Q DW+ RPL ++ L YAR D +L +
Sbjct: 109 DSQVAAMACGLGDSVSYENLVSQLLKARVDKSSQFTDWQRRPLTEKQLDYARGDVTHLRH 168
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
Y +K KL + + + V +YD +N++ ++
Sbjct: 169 CYVKLKAKLEKLGRMGWIEEETEILVNPDTYDTN---------PKNAWKR---MKIRKPR 216
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL-------LK 232
LA++A + EWR+ +A+ D+ +L + + EIA+Q P + RL K
Sbjct: 217 KDYLALIASVSEWREKLAQELDKPRSRILKDDAVQEIAQQKPIDVNAMERLRAVPKGFAK 276
Query: 233 SKH 235
SKH
Sbjct: 277 SKH 279
>gi|336320604|ref|YP_004600572.1| 3'-5' exonuclease [[Cellvibrio] gilvus ATCC 13127]
gi|336104185|gb|AEI12004.1| 3'-5' exonuclease [[Cellvibrio] gilvus ATCC 13127]
Length = 443
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + + +FDT A+R+L +ER L ++ G+ KE+ D
Sbjct: 130 VLHAASQDLPGLV-EQNLRPSRVFDTELAARLLGMERVGLAAVVADTLGLGLAKEHSAVD 188
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP E LRYA D L+ + ++ +L+ K + + ++ R
Sbjct: 189 WSTRPLPAEWLRYAALDVEVLVEVRQVLAERLAVAGK---------AQWAAQEFEAVRTA 239
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E + + GL A +A++LAVV L RD AR D S G VLP+ ++
Sbjct: 240 PPAPPRVE-PWRRVSGLH-AIRDARRLAVVRELWATRDTNARQRDISPGRVLPDAAIVAA 297
Query: 217 AKQLPTTAAKLRRL 230
A+ LP +L L
Sbjct: 298 AQALPRAVPQLTAL 311
>gi|310287702|ref|YP_003938960.1| ribonuclease D [Bifidobacterium bifidum S17]
gi|309251638|gb|ADO53386.1| Ribonuclease D [Bifidobacterium bifidum S17]
Length = 428
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLAPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTFAKEHSAADWSYRPLPRDWRNYA 167
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + M+ +L K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKVQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFRMI 279
>gi|289768333|ref|ZP_06527711.1| ribonuclease [Streptomyces lividans TK24]
gi|289698532|gb|EFD65961.1| ribonuclease [Streptomyces lividans TK24]
Length = 428
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMVPTRIFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 176
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 228 PPAE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQARDRIAQRRDVSPGKVLGDAAIVEA 285
Query: 217 AKQLPTTAAKLRRL 230
A LP A L L
Sbjct: 286 ALALPPNAHALAAL 299
>gi|392550649|ref|ZP_10297786.1| RNase D, processing tRNA s [Pseudoalteromonas spongiae
UST010723-006]
Length = 375
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 111/260 (42%), Gaps = 26/260 (10%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 84
++ ++P KV+H D+ R +FDT A +L ERN + + ++
Sbjct: 68 QLMENPNIIKVLHSPSEDLEVFARHGNCTPAPLFDTQFALSLLG-ERNCVGFANMVEMLL 126
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
+K +W RPL L YA D YL+ ++I+K KL N D
Sbjct: 127 EEQIDKSESRTNWLQRPLTKAQLDYAAADVFYLMPCFNIIKEKL--------NDDKQGIV 178
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 204
+ + ++ YE L E +YL I LN +QLAV+ L WR AR + +
Sbjct: 179 FGESAVIANKRKYETPL--ELAYLDIKN--AWQLNPKQLAVLQQLAAWRLNRAREKNLAL 234
Query: 205 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK-----------NSM 253
+++ L EIAK PT L+RL + + RY +L+++K +
Sbjct: 235 NFIVKEHILFEIAKTQPTHFGALKRLCEGDQGLLNRYGKTLLNLVKIGLDKDEAEHPEKI 294
Query: 254 QNAANFEVIAQKLKEERMEV 273
Q +F + LKE R E+
Sbjct: 295 QRLIDFHGYKKTLKELRAEL 314
>gi|226366248|ref|YP_002784031.1| ribonuclease [Rhodococcus opacus B4]
gi|226244738|dbj|BAH55086.1| putative ribonuclease [Rhodococcus opacus B4]
Length = 428
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 14/195 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L + G+ +FDT A R+ ER L ++ G K + AD
Sbjct: 108 ILHSADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGFELRKGHGAAD 166
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYDVCRQ 155
W RPLPD L YA D L+ + + M +L E SD E + R R
Sbjct: 167 WSKRPLPDTWLNYAALDVEVLVELRNAMAAELG----EQGKSDWAAQEFEHIRLAGPPRP 222
Query: 156 LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 215
++ + HI L+ +QLA V L + R+ +AR D S VLP+ +I+
Sbjct: 223 KPDRWRRTS----HITSLK----TQRQLAAVRSLWQAREDLARKRDVSPSRVLPDSAIID 274
Query: 216 IAKQLPTTAAKLRRL 230
A + P + LR L
Sbjct: 275 AATKDPRSIEALRAL 289
>gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084]
gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084]
Length = 376
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 26/214 (12%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 82
L + D + KV H +D+ + +FDT A+ L R + Y L+
Sbjct: 63 LARLLTDESITKVFHACSQDLEVIYDALHCVPGPIFDTQLAAAFLG-HRQQIGYGALVDA 121
Query: 83 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD------IMKIKLSSMPKESE 136
CGV K DW RPL E L YA +D YL IYD IM+ +L + E
Sbjct: 122 CCGVRLPKAESLTDWSRRPLDAEQLAYAEDDVRYLPGIYDQMMAELIMRDRLPWLAPEMA 181
Query: 137 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 196
+P + R + E +YLH+ + L +QLA+ +C WR+
Sbjct: 182 ELVSPAH--FMR-------------VPEEAYLHLR--RSGSLTRRQLAIAREVCAWRESA 224
Query: 197 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
A D +V+ + ++E K+ P T +LRR+
Sbjct: 225 AARRDVPRKWVVSDELIVEACKRAPRTLDRLRRI 258
>gi|318061059|ref|ZP_07979780.1| ribonuclease D [Streptomyces sp. SA3_actG]
gi|318079172|ref|ZP_07986504.1| ribonuclease D [Streptomyces sp. SA3_actF]
Length = 431
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 38 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 97
+H A +D+ L R+ G+ ++FDT A R+ R L ++ + G K + DW
Sbjct: 121 LHAATQDLPCL-REIGMVPHSLFDTELAGRLAGFPRVGLGAMVENVLGYTLEKGHSAVDW 179
Query: 98 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 157
RPLP+ LRYA D L+ + D ++ +L E + E +
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKEL-----ERQGKLEWALEEFDAIASAPPPAP 234
Query: 158 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
K+ S +H + +QLAVV L RD IAR D S G VLP+ ++E A
Sbjct: 235 RKDPWRRTSGMHRVRRR------RQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAA 288
Query: 218 KQLPTTAAKL 227
+P L
Sbjct: 289 LAVPVNVHAL 298
>gi|377562762|ref|ZP_09792130.1| ribonuclease D [Gordonia sputi NBRC 100414]
gi|377530059|dbj|GAB37295.1| ribonuclease D [Gordonia sputi NBRC 100414]
Length = 426
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 5 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 64
T + F++D + + P + E P + V+H AD+D+ L R+ G +FDT
Sbjct: 75 TGSGSFLLDPISEPETLAPVI-EALDGP--EWVLHAADQDLPCL-RELGFRCETVFDTEL 130
Query: 65 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 124
A R+L + +L ++ + + K + ADW RPLPD+ L YA D L+ + D +
Sbjct: 131 AGRLLGEPKVNLAAMVATYLELGLQKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAV 190
Query: 125 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 184
+ L K+ E + V R R +K + N +H N++ LA
Sbjct: 191 QQALVEQGKD-EWARQEFRYVLDRPAPAPR--VDKWRRTAN--VHTVK------NSRSLA 239
Query: 185 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
V L R+ +A+ D + G +LP+ ++ A +PT+ A+L RL
Sbjct: 240 AVRELWAAREELAQRRDVAPGRILPDSAIVTAANAMPTSQAELTRL 285
>gi|302522528|ref|ZP_07274870.1| ribonuclease D [Streptomyces sp. SPB78]
gi|302431423|gb|EFL03239.1| ribonuclease D [Streptomyces sp. SPB78]
Length = 431
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 38 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 97
+H A +D+ L R+ G+ ++FDT A R+ R L ++ + G K + DW
Sbjct: 121 LHAATQDLPCL-REIGMVPHSLFDTELAGRLAGFPRVGLGAMVENVLGYTLEKGHSAVDW 179
Query: 98 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 157
RPLP+ LRYA D L+ + D ++ +L E + E +
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKEL-----ERQGKLEWALEEFDAIASAPPPAP 234
Query: 158 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
K+ S +H + +QLAVV L RD IAR D S G VLP+ ++E A
Sbjct: 235 RKDPWRRTSGMHRVRRR------RQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAA 288
Query: 218 KQLPTTAAKL 227
+P L
Sbjct: 289 LAVPVNVHAL 298
>gi|213692580|ref|YP_002323166.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|384199780|ref|YP_005585523.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|213524041|gb|ACJ52788.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|320458732|dbj|BAJ69353.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
Length = 433
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + +M+ L + K+ ++ + S+ + L ++ L +L I
Sbjct: 172 ALDVEVLIELETLMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-LHPIPWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLTDSSIIEAATNKPHNAAQFRAL 283
>gi|359773330|ref|ZP_09276728.1| putative ribonuclease, partial [Gordonia effusa NBRC 100432]
gi|359309527|dbj|GAB19506.1| putative ribonuclease, partial [Gordonia effusa NBRC 100432]
Length = 427
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 5 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 64
T + F++D ++ +GP + E P + ++H AD+D+ L R+ + ++DT
Sbjct: 86 TGSGSFLIDPIEHPEALGPII-EALDGP--EWILHAADQDLPCL-RELDFHCAALYDTEL 141
Query: 65 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 124
A R+L L R +L ++ HF G+ K + ADW RPLP + L YA D L+ + + +
Sbjct: 142 AGRLLGLPRVNLAAMIAHFLGLGLAKGHGAADWSRRPLPADWLNYAALDVEVLVELREAI 201
Query: 125 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 184
+L++ K S+ + V R R + S +H Q + LA
Sbjct: 202 ADELAATGK-SDWAAQEFDYVLHRPPSPPR----TDRWRRTSNIHSIKTQ------RGLA 250
Query: 185 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
V L R+ +A D + G VLP+ ++ A P + ++L L
Sbjct: 251 TVRELWTAREDMAARRDIAPGRVLPDSAIVTAATADPKSMSELTGL 296
>gi|319784197|ref|YP_004143673.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170085|gb|ADV13623.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 383
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 24/226 (10%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 65
++D L + + P+ R + + KV H A +DI + ++L ++ FDT A
Sbjct: 52 LIDPLAPDIDLKPFFR-LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVA 105
Query: 66 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 124
+ V + S + L+ G +K + DWR RPL D+ L YA D +L+ +Y +
Sbjct: 106 AMVCGFGDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHL 165
Query: 125 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 184
+L E EN L E + R+ Y+ E+++ L+ Q+LA
Sbjct: 166 SAEL-----ERENRAHWLNE--EMEVLTSRETYDPH--PEDAWKR---LKMRLRKPQELA 213
Query: 185 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+V G+ WR+ AR D G VL + + E+A+Q P AA L +L
Sbjct: 214 IVQGVAAWREREARERDVPRGRVLKDDAIYEVAQQAPRDAAALGKL 259
>gi|350563555|ref|ZP_08932376.1| ribonuclease D [Thioalkalimicrobium aerophilum AL3]
gi|349778690|gb|EGZ33041.1| ribonuclease D [Thioalkalimicrobium aerophilum AL3]
Length = 390
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 126/267 (47%), Gaps = 17/267 (6%)
Query: 1 MQISTRT-EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI+T T +++D L ++ + L ++F + KV H A +D+ L + +
Sbjct: 44 IQIATPTLAVYIIDPLSIKNLIP--LWQLFSNTNITKVFHAARQDLEILYQQAECMPLPI 101
Query: 60 FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
FDT AS L L ++ S L+ CG N NK+ W RPL DE L YA D +L
Sbjct: 102 FDTQIASVFLGLGDQASYARLIEKLCGENINKDQARTQWLDRPLLDEQLEYAAADVWHLA 161
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
Y I+ L+ +++ +D + D LY E ++L + + L
Sbjct: 162 QAYPILLKSLTPTQRQAIQAD------FNNLTDPS--LYRTE--PAQAWLRMKP--SSSL 209
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
+ +QL ++ L WR+ A ++ +++ + LI++AK+ L +L + I
Sbjct: 210 SNKQLGLLKHLAAWREEQAVTLNQPRKWIVNDEALIQLAKRPVREVQDLHKLNQFDGETI 269
Query: 239 ERYMGPVLSIIKNSMQNAANFEVIAQK 265
++ ++ ++ +MQ+A N+ V AQK
Sbjct: 270 RQHGESLIRVLDKAMQDAENWPV-AQK 295
>gi|357021611|ref|ZP_09083842.1| 3'-5' exonuclease [Mycobacterium thermoresistibile ATCC 19527]
gi|356479359|gb|EHI12496.1| 3'-5' exonuclease [Mycobacterium thermoresistibile ATCC 19527]
Length = 437
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 20/211 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G+ ++DT A R+ R +L ++ G+ K + AD
Sbjct: 125 VLHAADQDLPCLA-ELGMRPPRLYDTELAGRLAGFARVNLATMVQQLLGLQLMKGHGAAD 183
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP E L YA D LL + + L K E ++ R
Sbjct: 184 WSKRPLPAEWLNYAALDVEVLLELRAAIAEVLDDQGK---------AEWAAEEFEYLRT- 233
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
YE + + G+ N + LA V L RD IAR D + G +LP+ +I+
Sbjct: 234 YEAPPTRRDRWRRTSGIHKV-RNGRALAAVRELWVTRDQIARRRDIAPGRILPDSAIIDA 292
Query: 217 AKQLPTTAAKLRRL--------LKSKHSYIE 239
A P T ++L L +S H ++E
Sbjct: 293 ATTDPKTISELTALPVFGGAKQRRSAHIWLE 323
>gi|417840732|ref|ZP_12486840.1| Ribonuclease D [Haemophilus haemolyticus M19501]
gi|341950543|gb|EGT77130.1| Ribonuclease D [Haemophilus haemolyticus M19501]
Length = 382
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P KV+H D++ ++F C M DT +R L L ++ L L + V
Sbjct: 77 LLANPKVLKVLHSCSEDLLVFLQEFDQLPCPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELILA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|229820453|ref|YP_002881979.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333]
gi|229566366|gb|ACQ80217.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333]
Length = 416
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A++D+ L + G+ ++FDT A R+L ER L ++ G+ KE+ D
Sbjct: 90 VLHAANQDLPCLA-EVGLVPRHVFDTELAGRLLGRERVGLAAIVEQELGLTLAKEHSAVD 148
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPL ++ LRYA D L+ + D ++ L K E ++
Sbjct: 149 WSTRPLREDWLRYAALDVEVLVELRDALERDLVRAGKAEWAR-----EEFEALRLAPPPA 203
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E S H A + +QLAV+ L RD + + D + G VLP+R ++
Sbjct: 204 PRPEPWRRTSGSH------AVRDPRQLAVMRALWVERDAVGQERDIAPGRVLPDRAIVAA 257
Query: 217 AKQLPTTAAKL 227
A LP T A L
Sbjct: 258 ATALPRTEAAL 268
>gi|213964497|ref|ZP_03392697.1| ribonuclease D [Corynebacterium amycolatum SK46]
gi|213952690|gb|EEB64072.1| ribonuclease D [Corynebacterium amycolatum SK46]
Length = 433
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+ L G+Y + DT A R+L LER +L L GV K + D
Sbjct: 98 IIHAAHSDLPCLA-ALGLYPTKVIDTELAGRLLGLERVNLAALTERLLGVGLAKGHGRED 156
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP + L YA D L+ + +++ L+ + + + Q
Sbjct: 157 WSTRPLPADWLDYAALDVELLIELAEVLCQALTELDR----------------LEWLEQE 200
Query: 157 YEKELLSENSYL------HIY-GLQGAG--LNAQQLAVVAGLCEWRDVIARADDESTGYV 207
E+EL YL H + GL+G G +QL V L RD IA+ D S +V
Sbjct: 201 CERELAINRKYLDGLHVGHSWQGLKGIGKLRTPEQLHVARALWTERDEIAQQRDVSPTHV 260
Query: 208 LPNRTLIEIAKQLPTTAAKL 227
+ + L IA+QLP T +L
Sbjct: 261 MGHSVLRTIAEQLPGTQREL 280
>gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
Length = 377
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 20/232 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T E V+D L + +GP L E+ D KV H +D+ L G +F
Sbjct: 41 VQVATPDECVVIDPLAID-DLGP-LAELMTDVDTLKVFHACSQDMEVLCHALGSVPAPIF 98
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L ER Y L+ FCGV+ K DW RPL + + YA +D YL+
Sbjct: 99 DTQVAAGFLG-ERAQCSYHNLVSTFCGVSLPKTESLTDWSRRPLSPKQIEYALDDVRYLI 157
Query: 119 YIYDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
Y +++ KL S+ + + D PL + D ++ + +
Sbjct: 158 DAYRVIESKLHSLGRTAWVRDEIRPLADPAHYRSD-----------PRAAFKRVKRVNAC 206
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
+QLAV L WR+ A D +V+ + L+ + K+ P T R
Sbjct: 207 --TRRQLAVARELASWREQRAETRDIPRKWVMSDEVLLALCKRAPQTVEDFR 256
>gi|29828773|ref|NP_823407.1| ribonuclease D [Streptomyces avermitilis MA-4680]
gi|29605878|dbj|BAC69942.1| putative ribonuclease D [Streptomyces avermitilis MA-4680]
Length = 426
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 114 VLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFPRVGLGAMVESVLGFVLEKGHSAVD 172
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 173 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWAQQEFDAIASA 223
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +Q+AVV L E RD IA+ D S G VL + ++E
Sbjct: 224 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWETRDRIAQRRDVSPGKVLGDTAIVEA 281
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
A LP L L H R +
Sbjct: 282 ALALPANTHALAALNGFGHRMGRRQL 307
>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 406
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 6/123 (4%)
Query: 1 MQISTRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 58
+QI++ +++++D LK+ +GP +F+DP K+ H A DI L+RDFG N
Sbjct: 48 IQINSNGKNYLIDPLKITNLSALGP----LFEDPNILKIFHSAQDDIKALKRDFGFKFVN 103
Query: 59 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT +SR+L LE++SL +++ H+ V +K Q ++W +RPL + L+YA DT YL
Sbjct: 104 TADTMISSRLLSLEQSSLSFVVEHYHKVTLSKVEQKSNWEIRPLQKQQLKYAALDTAYLE 163
Query: 119 YIY 121
I+
Sbjct: 164 SIW 166
>gi|381397371|ref|ZP_09922783.1| 3'-5' exonuclease [Microbacterium laevaniformans OR221]
gi|380775356|gb|EIC08648.1| 3'-5' exonuclease [Microbacterium laevaniformans OR221]
Length = 398
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 18/225 (8%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
L+E D T ++H A +D+ L R+ + +FDT A+R+L ER L ++
Sbjct: 69 LQEAIGDITW--ILHAASQDLPSL-REENLEPPQIFDTELAARLLGHERVGLGAVVEDTL 125
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
G+ K + ADW RPLP L YA D +L+ ++++++ +L K T+
Sbjct: 126 GITLAKAHSAADWSTRPLPQPWLEYAALDVLHLVDVFEVLRDELEEQGK---------TD 176
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 204
+ + ++ R K E + + GL + LA+ L R+ AR D S
Sbjct: 177 IAAQEFETVRTRPVKP-PREEPWRRLSGLHTVR-GRRALAIARALWIAREEYAREQDTSP 234
Query: 205 GYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 245
G ++P+R L+ + P T L R+ ++ S ++R+ +
Sbjct: 235 GRLVPDRALVAVVIADPKTKQDLARVKDFTGRASRSQLDRWWAAI 279
>gi|441513674|ref|ZP_20995502.1| ribonuclease D [Gordonia amicalis NBRC 100051]
gi|441451620|dbj|GAC53463.1| ribonuclease D [Gordonia amicalis NBRC 100051]
Length = 424
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 16/255 (6%)
Query: 1 MQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R F++D + + P + + + P + V+H AD+D+ L R+ G +
Sbjct: 70 IQIKRRGAGSFLLDPIADPGALAPVI-DALRGP--EWVLHAADQDLPCL-RELGFECVEL 125
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+L L + +L ++ F G+ K + ADW RPLPDE L YA D L+
Sbjct: 126 YDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRRPLPDEWLNYAALDVEVLVE 185
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D M L+ K+ + V R R + + S +H +
Sbjct: 186 LRDAMDAALAESGKDGWAREE-FAYVLSRPPAPPR----TDRWRKTSNIHTVK------S 234
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
A+ LA V L R+ +A D + G VLP+ ++ A P + ++L RL
Sbjct: 235 ARALAAVRELWMAREELAERRDVAPGRVLPDTAIVNAATADPRSNSELTRLPIFGGPRQR 294
Query: 240 RYMGPVLSIIKNSMQ 254
R G LS ++ + +
Sbjct: 295 RQAGIWLSALQRARE 309
>gi|359790885|ref|ZP_09293762.1| ribonuclease D, partial [Mesorhizobium alhagi CCNWXJ12-2]
gi|359253146|gb|EHK56314.1| ribonuclease D, partial [Mesorhizobium alhagi CCNWXJ12-2]
Length = 355
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 70
+VD L L + + P+ + + KV H A +DI + G+ +FDT A+ V
Sbjct: 52 LVDPLSLDIDLAPFF-ALMANEAVTKVFHAARQDIEIVFHLGGLLPHPVFDTQVAAMVCG 110
Query: 71 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+ S + L+ G + +K + DWR RPL D+ L YA D +L+ +Y +K +L
Sbjct: 111 FGDSVSYDQLVQRITGAHLDKSSRFTDWRHRPLSDKQLEYALADVTHLIEVYQHLKTQL- 169
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
E +N L E + R+ Y+ ++++ L+ +LAVV +
Sbjct: 170 ----ERDNRAHWLNE--EMEILTSRETYDPH--PDDAWKR---LKMRLRKPVELAVVQAV 218
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
WR+ AR + G VL + + E+A+Q P AA L RL
Sbjct: 219 AAWREREARDRNVPRGRVLKDDAIYEVAQQQPRDAAALARL 259
>gi|375094980|ref|ZP_09741245.1| ribonuclease D [Saccharomonospora marina XMU15]
gi|374655713|gb|EHR50546.1| ribonuclease D [Saccharomonospora marina XMU15]
Length = 402
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 14/221 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
++D + LR + P L V D + V+H A +D+ L D G+ ++FDT A R+
Sbjct: 67 LLIDPIPLRDHLEP-LGAVLAD--TEWVLHAASQDLPCLA-DLGLRPPSLFDTELAGRLA 122
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
ER +L L+ + G K + ADW RPLP + L YA D L+ + + ++ +L+
Sbjct: 123 GHERVALGTLVENLLGYKLEKGHSAADWSKRPLPTDWLNYAALDVELLVPLREKLEAELA 182
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
+ K E ++ ++ R + + G+ A+ LA V L
Sbjct: 183 AQGK---------LEWARQEFEWVRTSGGQPAPRSEPWRRTSGIHKVR-TARGLAAVRAL 232
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ RD +AR D + +LP+ +I P T A L+ L
Sbjct: 233 WQARDELARKRDRAPSRILPDSAIINAVLADPRTTADLQAL 273
>gi|239917797|ref|YP_002957355.1| ribonuclease D [Micrococcus luteus NCTC 2665]
gi|239839004|gb|ACS30801.1| ribonuclease D [Micrococcus luteus NCTC 2665]
Length = 416
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 12/231 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G+ +FDT A+RV L R L +L GV KE+ AD
Sbjct: 100 ILHAASQDLPCLA-EQGLRPDRLFDTELAARVAGLPRVGLVAVLEELLGVTLAKEHSAAD 158
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W VRPLP+ ML YA D L+ + + + +L +D L + V +
Sbjct: 159 WSVRPLPEAMLTYAALDVELLVPLREALIARL--------EADGKLAWAEQEFEHV--RT 208
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
++ + G Q Q+ AV+ L E R+ +AR D + G ++P+R+++
Sbjct: 209 APPPAPKKDPWRGTSGSQTLRRPVQR-AVLKRLWEAREDLARHRDVAPGRLIPDRSIVAA 267
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLK 267
A P T LR+ R ++ I+ +++A + A +++
Sbjct: 268 AAAQPRTVPALRQTSGFHGRAASREAPRWIAAIRAGVEDAERGDAPAAQIR 318
>gi|419839681|ref|ZP_14363087.1| ribonuclease D [Haemophilus haemolyticus HK386]
gi|386909259|gb|EIJ73935.1| ribonuclease D [Haemophilus haemolyticus HK386]
Length = 380
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P KV+H D++ ++F +M DT +R L L ++ L L H + V
Sbjct: 77 LLSNPKVLKVLHSCSEDLLVFLQEFDQLPHSMIDTQIMARFLGLGTSAGLAKLAHQYLNV 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLKYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSDNLWKVAKNNPRNTSEM 268
>gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1]
gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1]
Length = 374
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 47 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 104
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 105 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 163
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 164 QVYLALDTRLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 211
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 212 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 254
>gi|315604318|ref|ZP_07879384.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
gi|315314024|gb|EFU62075.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
Length = 414
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 99/235 (42%), Gaps = 37/235 (15%)
Query: 18 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD----------FGIYLCNMFDTGQASR 67
R VG +L + P + G D VWL D G+ ++FDT A+R
Sbjct: 74 REDVGTFLIDTHALPDLSALAPGVDD--VWLLHDCLQDLPNLRQVGLVPSSLFDTEIAAR 131
Query: 68 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 127
++ LER L + G+ K++Q +DW +RPLP E LRYA D L +Y + +
Sbjct: 132 LVGLERFGLAAVAEQVLGLGLVKDHQASDWSLRPLPPEWLRYAALDVELLTELYYRLSKR 191
Query: 128 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL---HIYGLQGAG--LNAQQ 182
L M + ++ +Q + L S L GAG + +
Sbjct: 192 LDQMGR----------------WEWAQQEFSHALSVRPSPAKPDRWRSLPGAGKVRSRRG 235
Query: 183 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 237
LAV+ L E R+ IAR D S G ++ N L+ A P RR L S + +
Sbjct: 236 LAVLQALWETREEIARRVDISPGRLVRNAALVRAASAPPRN----RRALMSINEF 286
>gi|408528598|emb|CCK26772.1| ribonuclease [Streptomyces davawensis JCM 4913]
Length = 382
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 93/222 (41%), Gaps = 22/222 (9%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
L EV D + V+H A +D+ L R+ G+ +FDT A R+ R L ++ +
Sbjct: 64 LGEVLAD--AEWVLHAATQDLPCL-REIGMIPSRIFDTELAGRLAGFPRVGLGPMVENVL 120
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
G K + DW RPLP+ LRYA D L+ + D ++ +L K E
Sbjct: 121 GFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LE 171
Query: 145 VYKRSYDVCRQL----YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
++ +D KE S +H + +QL VV L E RD IA+
Sbjct: 172 WARQEFDAIASAPPPEPRKEPWRRTSGMHKVRRR------RQLGVVRELWETRDRIAQRR 225
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 242
D S G VL + ++E A LP L L H R +
Sbjct: 226 DVSPGKVLSDAAIVEAALGLPANVHALSALSGFGHRMGRRQL 267
>gi|169630071|ref|YP_001703720.1| hypothetical protein MAB_2988 [Mycobacterium abscessus ATCC 19977]
gi|420910597|ref|ZP_15373909.1| ribonuclease III [Mycobacterium abscessus 6G-0125-R]
gi|420917049|ref|ZP_15380353.1| ribonuclease III [Mycobacterium abscessus 6G-0125-S]
gi|420922214|ref|ZP_15385511.1| ribonuclease III [Mycobacterium abscessus 6G-0728-S]
gi|420927876|ref|ZP_15391158.1| ribonuclease III [Mycobacterium abscessus 6G-1108]
gi|420967485|ref|ZP_15430689.1| ribonuclease III [Mycobacterium abscessus 3A-0810-R]
gi|420978216|ref|ZP_15441394.1| ribonuclease III [Mycobacterium abscessus 6G-0212]
gi|420983601|ref|ZP_15446768.1| ribonuclease III [Mycobacterium abscessus 6G-0728-R]
gi|421007806|ref|ZP_15470917.1| ribonuclease III [Mycobacterium abscessus 3A-0119-R]
gi|421013569|ref|ZP_15476650.1| ribonuclease III [Mycobacterium abscessus 3A-0122-R]
gi|421018518|ref|ZP_15481576.1| ribonuclease III [Mycobacterium abscessus 3A-0122-S]
gi|421025191|ref|ZP_15488235.1| ribonuclease III [Mycobacterium abscessus 3A-0731]
gi|421029834|ref|ZP_15492866.1| ribonuclease III [Mycobacterium abscessus 3A-0930-R]
gi|421035103|ref|ZP_15498123.1| ribonuclease III [Mycobacterium abscessus 3A-0930-S]
gi|169242038|emb|CAM63066.1| Conserved hypothetical protein (putative exonuclease)
[Mycobacterium abscessus]
gi|392112591|gb|EIU38360.1| ribonuclease III [Mycobacterium abscessus 6G-0125-R]
gi|392121189|gb|EIU46955.1| ribonuclease III [Mycobacterium abscessus 6G-0125-S]
gi|392132050|gb|EIU57796.1| ribonuclease III [Mycobacterium abscessus 6G-0728-S]
gi|392135109|gb|EIU60850.1| ribonuclease III [Mycobacterium abscessus 6G-1108]
gi|392166490|gb|EIU92175.1| ribonuclease III [Mycobacterium abscessus 6G-0212]
gi|392168597|gb|EIU94275.1| ribonuclease III [Mycobacterium abscessus 6G-0728-R]
gi|392199259|gb|EIV24869.1| ribonuclease III [Mycobacterium abscessus 3A-0119-R]
gi|392201917|gb|EIV27515.1| ribonuclease III [Mycobacterium abscessus 3A-0122-R]
gi|392208393|gb|EIV33967.1| ribonuclease III [Mycobacterium abscessus 3A-0122-S]
gi|392211988|gb|EIV37554.1| ribonuclease III [Mycobacterium abscessus 3A-0731]
gi|392224586|gb|EIV50106.1| ribonuclease III [Mycobacterium abscessus 3A-0930-R]
gi|392225835|gb|EIV51350.1| ribonuclease III [Mycobacterium abscessus 3A-0930-S]
gi|392249992|gb|EIV75466.1| ribonuclease III [Mycobacterium abscessus 3A-0810-R]
Length = 400
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 16/228 (7%)
Query: 1 MQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R V+ D + +GP + + D + ++H AD+D+ L + + ++
Sbjct: 63 IQIRRRGAGTVLLDPTNVPGSLGPIVDALGAD---EWILHAADQDLPCLA-ELAMKPPSL 118
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+ E+ +L ++H G+ K + ADW RPLPD+ L YA D L+
Sbjct: 119 YDTELAGRLAGFEKVNLASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVE 178
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D + L+ K +E + + R ++ S +H G
Sbjct: 179 LRDKIAEVLAEQGK-TEWARQEFEHLAHTPVPATR----RDNWRRTSGIHKVRKPG---- 229
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
QLA V L RD +ARA D + G LP+ ++E A P T A+L
Sbjct: 230 --QLAAVRELWLSRDELARARDVAPGRTLPDSAIVEAALADPKTRAEL 275
>gi|418421090|ref|ZP_12994266.1| hypothetical protein MBOL_28120 [Mycobacterium abscessus subsp.
bolletii BD]
gi|363997557|gb|EHM18768.1| hypothetical protein MBOL_28120 [Mycobacterium abscessus subsp.
bolletii BD]
Length = 400
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 16/228 (7%)
Query: 1 MQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R V+ D + +GP + + D + ++H AD+D+ L + + ++
Sbjct: 63 IQIRRRGAGTVLLDPTNVPGSLGPIVDALGAD---EWILHAADQDLPCLA-ELAMKPPSL 118
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+ E+ +L ++H G+ K + ADW RPLPD+ L YA D L+
Sbjct: 119 YDTELAGRLAGFEKVNLASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVE 178
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D + L+ K +E + + R ++ S +H G
Sbjct: 179 LRDKIAEVLAKQGK-TEWARQEFEHLAHTPVPATR----RDNWRRTSGIHKVRKPG---- 229
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
QLA V L RD +ARA D + G LP+ ++E A P T A+L
Sbjct: 230 --QLAAVRELWLSRDELARARDVAPGRTLPDSAIVEAALADPKTRAEL 275
>gi|281413711|ref|ZP_06245453.1| ribonuclease D [Micrococcus luteus NCTC 2665]
Length = 415
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G+ +FDT A+RV L R L +L GV KE+ AD
Sbjct: 100 ILHAASQDLPCLA-EQGLRPDRLFDTELAARVAGLPRVGLVAVLEELLGVTLAKEHSAAD 158
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W VRPLP+ ML YA D L+ + + + +L +D L + V +
Sbjct: 159 WSVRPLPEAMLTYAALDVELLVPLREALIARL--------EADGKLAWAEQEFEHV--RT 208
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
++ + G Q Q+ AV+ L E R+ +AR D + G ++P+R+++
Sbjct: 209 APPPAPKKDPWRGTSGSQTLRRPVQR-AVLKRLWEAREDLARHRDVAPGRLIPDRSIVAA 267
Query: 217 AKQLPTTAAKLR 228
A P T LR
Sbjct: 268 AAAQPRTVPALR 279
>gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192]
gi|386059670|ref|YP_005976192.1| ribonuclease D [Pseudomonas aeruginosa M18]
gi|421181719|ref|ZP_15639210.1| ribonuclease D [Pseudomonas aeruginosa E2]
gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192]
gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
gi|347305976|gb|AEO76090.1| ribonuclease D [Pseudomonas aeruginosa M18]
gi|404543287|gb|EKA52574.1| ribonuclease D [Pseudomonas aeruginosa E2]
Length = 374
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 17/229 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 47 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 104
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 105 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 163
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 164 QVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 211
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
QQLAV+ LC WR+ AR + +VL RTL +A+ LP L
Sbjct: 212 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLPKNKTDL 260
>gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2]
gi|421515925|ref|ZP_15962611.1| ribonuclease D [Pseudomonas aeruginosa PAO579]
gi|404349653|gb|EJZ75990.1| ribonuclease D [Pseudomonas aeruginosa PAO579]
Length = 380
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 53 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 110
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 111 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 169
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 170 QVYLALDTRLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 217
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 218 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 260
>gi|419709773|ref|ZP_14237241.1| 3'-5' exonuclease [Mycobacterium abscessus M93]
gi|419716748|ref|ZP_14244143.1| 3'-5' exonuclease [Mycobacterium abscessus M94]
gi|420864384|ref|ZP_15327774.1| ribonuclease III [Mycobacterium abscessus 4S-0303]
gi|420869175|ref|ZP_15332557.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RA]
gi|420873619|ref|ZP_15336996.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RB]
gi|420989830|ref|ZP_15452986.1| ribonuclease III [Mycobacterium abscessus 4S-0206]
gi|421040139|ref|ZP_15503148.1| ribonuclease III [Mycobacterium abscessus 4S-0116-R]
gi|421043974|ref|ZP_15506975.1| ribonuclease III [Mycobacterium abscessus 4S-0116-S]
gi|382940309|gb|EIC64633.1| 3'-5' exonuclease [Mycobacterium abscessus M94]
gi|382943654|gb|EIC67968.1| 3'-5' exonuclease [Mycobacterium abscessus M93]
gi|392068645|gb|EIT94492.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RA]
gi|392071359|gb|EIT97205.1| ribonuclease III [Mycobacterium abscessus 4S-0303]
gi|392072647|gb|EIT98488.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RB]
gi|392184109|gb|EIV09760.1| ribonuclease III [Mycobacterium abscessus 4S-0206]
gi|392225231|gb|EIV50750.1| ribonuclease III [Mycobacterium abscessus 4S-0116-R]
gi|392237826|gb|EIV63320.1| ribonuclease III [Mycobacterium abscessus 4S-0116-S]
Length = 400
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 16/228 (7%)
Query: 1 MQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R V+ D + +GP + + D + ++H AD+D+ L + + ++
Sbjct: 63 IQIRRRGAGTVLLDPTNVPGSLGPIVDALGAD---EWILHAADQDLPCLA-ELAMKPPSL 118
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+ E+ +L ++H G+ K + ADW RPLPD+ L YA D L+
Sbjct: 119 YDTELAGRLAGFEKVNLASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVE 178
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D + L+ K +E + + R ++ S +H G
Sbjct: 179 LRDKIAEVLAEQGK-TEWARQEFEHLAHTPVPATR----RDNWRRTSGIHKVRKPG---- 229
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
QLA V L RD +ARA D + G LP+ ++E A P T A+L
Sbjct: 230 --QLAAVRELWLSRDELARARDVAPGRTLPDSAIVEAALADPKTRAEL 275
>gi|416856557|ref|ZP_11912131.1| ribonuclease D [Pseudomonas aeruginosa 138244]
gi|420140701|ref|ZP_14648441.1| ribonuclease D [Pseudomonas aeruginosa CIG1]
gi|421161990|ref|ZP_15620882.1| ribonuclease D [Pseudomonas aeruginosa ATCC 25324]
gi|424940506|ref|ZP_18356269.1| ribonuclease D [Pseudomonas aeruginosa NCMG1179]
gi|451988440|ref|ZP_21936569.1| Ribonuclease D [Pseudomonas aeruginosa 18A]
gi|334841819|gb|EGM20440.1| ribonuclease D [Pseudomonas aeruginosa 138244]
gi|346056952|dbj|GAA16835.1| ribonuclease D [Pseudomonas aeruginosa NCMG1179]
gi|403246543|gb|EJY60259.1| ribonuclease D [Pseudomonas aeruginosa CIG1]
gi|404537329|gb|EKA46933.1| ribonuclease D [Pseudomonas aeruginosa ATCC 25324]
gi|451753938|emb|CCQ89092.1| Ribonuclease D [Pseudomonas aeruginosa 18A]
Length = 374
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 47 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 104
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 105 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 163
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 164 QVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 211
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 212 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 254
>gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016]
gi|355645431|ref|ZP_09054144.1| ribonuclease D [Pseudomonas sp. 2_1_26]
gi|386065119|ref|YP_005980423.1| ribonuclease D [Pseudomonas aeruginosa NCGM2.S1]
gi|421155212|ref|ZP_15614693.1| ribonuclease D [Pseudomonas aeruginosa ATCC 14886]
gi|421169151|ref|ZP_15627193.1| ribonuclease D [Pseudomonas aeruginosa ATCC 700888]
gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016]
gi|348033678|dbj|BAK89038.1| ribonuclease D [Pseudomonas aeruginosa NCGM2.S1]
gi|354828894|gb|EHF12994.1| ribonuclease D [Pseudomonas sp. 2_1_26]
gi|404520842|gb|EKA31492.1| ribonuclease D [Pseudomonas aeruginosa ATCC 14886]
gi|404527609|gb|EKA37756.1| ribonuclease D [Pseudomonas aeruginosa ATCC 700888]
Length = 374
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 47 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 104
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 105 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 163
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 164 QVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 211
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 212 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 254
>gi|306818778|ref|ZP_07452500.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
gi|304648464|gb|EFM45767.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
Length = 422
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 24/191 (12%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+ WL + G+ +FDT A+++L ER L L G+ KE+ AD
Sbjct: 110 ILHDATTDMPWLA-EIGMRPKLLFDTELAAKLLNFERFGLGSLTEQVLGIMLEKEHSAAD 168
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D +L+ + + ++L K+ D Q
Sbjct: 169 WSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKD----------------DWAEQE 212
Query: 157 YEKELLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+E L E + + H+ G G + + LA + L + R+ I A++ + VL N
Sbjct: 213 FEHLLYFEPPAPKPDPWRHVPG-SGKVYSPRNLAALRELWQTREKICAAENLAPTKVLSN 271
Query: 211 RTLIEIAKQLP 221
LI +A LP
Sbjct: 272 PALIALAVALP 282
>gi|418583147|ref|ZP_13147217.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P1]
gi|375047367|gb|EHS39913.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P1]
Length = 376
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 49 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 106
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 107 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 165
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 166 QVYLALDTRLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 213
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 214 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 256
>gi|269977281|ref|ZP_06184254.1| ribonuclease D [Mobiluncus mulieris 28-1]
gi|307701108|ref|ZP_07638133.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
gi|269934584|gb|EEZ91145.1| ribonuclease D [Mobiluncus mulieris 28-1]
gi|307614103|gb|EFN93347.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
Length = 422
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 24/191 (12%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+ WL + G+ +FDT A+++L ER L L G+ KE+ AD
Sbjct: 110 ILHDATTDMPWLA-EIGMRPKLLFDTELAAKLLNFERFGLGSLTEQVLGIMLEKEHSAAD 168
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D +L+ + + ++L K+ D Q
Sbjct: 169 WSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKD----------------DWAEQE 212
Query: 157 YEKELLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+E L E + + H+ G G + + LA + L + R+ I A++ + VL N
Sbjct: 213 FEHLLYFEPPAPKPDPWRHVPG-SGKVYSPRNLAALRELWQTREKICAAENLAPTKVLSN 271
Query: 211 RTLIEIAKQLP 221
LI +A LP
Sbjct: 272 PALIALAVALP 282
>gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719]
gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719]
Length = 374
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 47 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 104
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 105 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 163
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 164 QVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 211
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 212 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 254
>gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1]
gi|416873541|ref|ZP_11917580.1| ribonuclease D [Pseudomonas aeruginosa 152504]
gi|421175630|ref|ZP_15633306.1| ribonuclease D [Pseudomonas aeruginosa CI27]
gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
gi|334844716|gb|EGM23287.1| ribonuclease D [Pseudomonas aeruginosa 152504]
gi|404532027|gb|EKA41953.1| ribonuclease D [Pseudomonas aeruginosa CI27]
Length = 374
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 47 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 104
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 105 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 163
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 164 QVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 211
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 212 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 254
>gi|256832621|ref|YP_003161348.1| 3'-5' exonuclease [Jonesia denitrificans DSM 20603]
gi|256686152|gb|ACV09045.1| 3'-5' exonuclease [Jonesia denitrificans DSM 20603]
Length = 406
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
+ H A +D+ L RD G+ +FDT A+R+L L+R +L + HF GV K++ + D
Sbjct: 96 IFHAAIQDLGPL-RDQGLTPGTIFDTEVAARLLGLDRVNLAAVTAHFLGVTLEKQHSHQD 154
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT-PLTEVYKRSYDVCRQ 155
W RPLP L YA D L + S+T LTE K +
Sbjct: 155 WSTRPLPSSWLTYAALDVELL---------------GDLAISETDALTETRKLRWAHEEF 199
Query: 156 LY---EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
Y ++ + + + G+Q + ++LAVV L R+ IAR+ D + +L +R
Sbjct: 200 AYIQAQRAIHRPDPWRRTSGIQRVT-DRRRLAVVQHLWNEREKIARSKDLAPSRILSDRG 258
Query: 213 LIEIAKQLPTTAAKL 227
+IE A LP T L
Sbjct: 259 IIEAAITLPRTVGAL 273
>gi|385674396|ref|ZP_10048324.1| ribonuclease D [Amycolatopsis sp. ATCC 39116]
Length = 407
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 15/234 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
+VD + L ++GP L++V ++ V+H A +D+ L + + ++FDT A R+
Sbjct: 73 VLVDPIALEGRLGP-LQDVLNG--EEWVLHAASQDLPCLA-ELDLVPGSLFDTELAGRLA 128
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
ER +L L+ G + K + ADW RPLP + L YA D L+ + + ++ +L
Sbjct: 129 GYERVALGTLVEKLLGYHLEKGHSAADWSKRPLPVDWLNYAALDVELLIPLREKLEAELD 188
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
+ K + ++ ++ R + SE + G+ A+ LA V L
Sbjct: 189 AQGK---------LDWARQEFEAVRTAPQPPPRSE-PWRRTSGIHKVR-TARGLAAVRAL 237
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 243
E RD +AR D + VLP+ ++ P + A+L+ L RY G
Sbjct: 238 WEARDELARKRDRAPSRVLPDSAIVNAVLAEPKSVAELQALPVFGGRVQRRYTG 291
>gi|21224360|ref|NP_630139.1| ribonuclease [Streptomyces coelicolor A3(2)]
gi|3169042|emb|CAA19240.1| putative ribonuclease [Streptomyces coelicolor A3(2)]
Length = 394
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 84 VLHAATQDLPCL-REIGMVPTRIFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 142
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 143 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 193
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 194 PPAE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQARDRIAQRRDVSPGKVLGDAAIVEA 251
Query: 217 AKQLPTTAAKLRRL 230
A LP A L L
Sbjct: 252 ALALPPNAHALAAL 265
>gi|418594535|ref|ZP_13158323.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P2]
gi|375043331|gb|EHS35959.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P2]
Length = 393
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 66 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 123
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 124 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 182
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 183 QVYLALDTRLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 230
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 231 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 273
>gi|365870911|ref|ZP_09410452.1| hypothetical protein MMAS_28540 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679858|ref|YP_006521393.1| ribonuclease D [Mycobacterium massiliense str. GO 06]
gi|414584634|ref|ZP_11441774.1| ribonuclease III [Mycobacterium abscessus 5S-1215]
gi|418247873|ref|ZP_12874259.1| 3'-5' exonuclease [Mycobacterium abscessus 47J26]
gi|420878742|ref|ZP_15342109.1| ribonuclease III [Mycobacterium abscessus 5S-0304]
gi|420885673|ref|ZP_15349033.1| ribonuclease III [Mycobacterium abscessus 5S-0421]
gi|420889577|ref|ZP_15352925.1| ribonuclease III [Mycobacterium abscessus 5S-0422]
gi|420896274|ref|ZP_15359613.1| ribonuclease III [Mycobacterium abscessus 5S-0708]
gi|420899545|ref|ZP_15362877.1| ribonuclease III [Mycobacterium abscessus 5S-0817]
gi|420906083|ref|ZP_15369401.1| ribonuclease III [Mycobacterium abscessus 5S-1212]
gi|420932091|ref|ZP_15395366.1| ribonuclease III [Mycobacterium massiliense 1S-151-0930]
gi|420938975|ref|ZP_15402244.1| ribonuclease III [Mycobacterium massiliense 1S-152-0914]
gi|420942348|ref|ZP_15405605.1| ribonuclease III [Mycobacterium massiliense 1S-153-0915]
gi|420946622|ref|ZP_15409872.1| ribonuclease III [Mycobacterium massiliense 1S-154-0310]
gi|420952608|ref|ZP_15415852.1| ribonuclease III [Mycobacterium massiliense 2B-0626]
gi|420956777|ref|ZP_15420014.1| ribonuclease III [Mycobacterium massiliense 2B-0107]
gi|420961845|ref|ZP_15425070.1| ribonuclease III [Mycobacterium massiliense 2B-1231]
gi|420972953|ref|ZP_15436146.1| ribonuclease III [Mycobacterium abscessus 5S-0921]
gi|420992736|ref|ZP_15455883.1| ribonuclease III [Mycobacterium massiliense 2B-0307]
gi|420998587|ref|ZP_15461724.1| ribonuclease III [Mycobacterium massiliense 2B-0912-R]
gi|421003024|ref|ZP_15466148.1| ribonuclease III [Mycobacterium massiliense 2B-0912-S]
gi|421049988|ref|ZP_15512982.1| ribonuclease III [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|353452366|gb|EHC00760.1| 3'-5' exonuclease [Mycobacterium abscessus 47J26]
gi|363994714|gb|EHM15932.1| hypothetical protein MMAS_28540 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392081436|gb|EIU07262.1| ribonuclease III [Mycobacterium abscessus 5S-0421]
gi|392083651|gb|EIU09476.1| ribonuclease III [Mycobacterium abscessus 5S-0304]
gi|392087325|gb|EIU13147.1| ribonuclease III [Mycobacterium abscessus 5S-0422]
gi|392095586|gb|EIU21381.1| ribonuclease III [Mycobacterium abscessus 5S-0708]
gi|392100892|gb|EIU26683.1| ribonuclease III [Mycobacterium abscessus 5S-0817]
gi|392103987|gb|EIU29773.1| ribonuclease III [Mycobacterium abscessus 5S-1212]
gi|392119786|gb|EIU45554.1| ribonuclease III [Mycobacterium abscessus 5S-1215]
gi|392136850|gb|EIU62587.1| ribonuclease III [Mycobacterium massiliense 1S-151-0930]
gi|392144490|gb|EIU70215.1| ribonuclease III [Mycobacterium massiliense 1S-152-0914]
gi|392149775|gb|EIU75489.1| ribonuclease III [Mycobacterium massiliense 1S-153-0915]
gi|392153652|gb|EIU79358.1| ribonuclease III [Mycobacterium massiliense 1S-154-0310]
gi|392157920|gb|EIU83617.1| ribonuclease III [Mycobacterium massiliense 2B-0626]
gi|392165845|gb|EIU91531.1| ribonuclease III [Mycobacterium abscessus 5S-0921]
gi|392185520|gb|EIV11169.1| ribonuclease III [Mycobacterium massiliense 2B-0307]
gi|392186399|gb|EIV12046.1| ribonuclease III [Mycobacterium massiliense 2B-0912-R]
gi|392194482|gb|EIV20102.1| ribonuclease III [Mycobacterium massiliense 2B-0912-S]
gi|392238591|gb|EIV64084.1| ribonuclease III [Mycobacterium massiliense CCUG 48898]
gi|392249310|gb|EIV74785.1| ribonuclease III [Mycobacterium massiliense 2B-1231]
gi|392253676|gb|EIV79144.1| ribonuclease III [Mycobacterium massiliense 2B-0107]
gi|395458123|gb|AFN63786.1| Ribonuclease D [Mycobacterium massiliense str. GO 06]
Length = 400
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 16/228 (7%)
Query: 1 MQISTRTEDFVV-DTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R V+ D + +GP + + D + ++H AD+D+ L + + ++
Sbjct: 63 IQIRRRGAGTVLLDPTNVPGSLGPIVEALGAD---EWILHAADQDLPCLA-ELDMKPPSL 118
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+ E+ +L ++H G+ K + ADW RPLPD+ L YA D L+
Sbjct: 119 YDTELAGRLAGFEKVNLASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVE 178
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D + L+ K +E + + R ++ S +H G
Sbjct: 179 LRDKIAEVLAEQGK-TEWARQEFEHLAHTPVPATR----RDNWRRTSGIHKVRKPG---- 229
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
QLA V L RD +ARA D + G LP+ ++E A P T A+L
Sbjct: 230 --QLAAVRELWLSRDELARARDVAPGRTLPDSAIVEAALADPKTRAEL 275
>gi|392985222|ref|YP_006483809.1| ribonuclease D [Pseudomonas aeruginosa DK2]
gi|419751377|ref|ZP_14277789.1| ribonuclease D [Pseudomonas aeruginosa PADK2_CF510]
gi|384402151|gb|EIE48502.1| ribonuclease D [Pseudomonas aeruginosa PADK2_CF510]
gi|392320727|gb|AFM66107.1| ribonuclease D [Pseudomonas aeruginosa DK2]
Length = 376
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 49 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 106
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 107 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 165
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 166 QVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 213
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 214 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 256
>gi|403727735|ref|ZP_10947771.1| ribonuclease D [Gordonia rhizosphera NBRC 16068]
gi|403203798|dbj|GAB92102.1| ribonuclease D [Gordonia rhizosphera NBRC 16068]
Length = 426
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 15/221 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + + P + E K P + V+H AD+D+ L R+ G +FDT A R+L
Sbjct: 86 FLLDPIAEPEGLAPVI-EALKGP--EWVLHAADQDLPCL-RELGFVCDTLFDTELAGRLL 141
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+ +L ++ F G K + ADW RPLPDE L YA D L+ + + L+
Sbjct: 142 GAGKVNLAAMVADFLGFGLVKGHGAADWSRRPLPDEWLNYAALDVEVLVDLRHAVHAALT 201
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
K+ + +Y + R +I+ ++ +++ LA V L
Sbjct: 202 EAGKDEWARQ-------EFAYILDRPPTPPRPDRWRKTSNIHAVK----SSRALAAVREL 250
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
R+ +A+ D + G +LP+ ++ A P +A +L RL
Sbjct: 251 WTAREELAQRRDVAPGRILPDSAIVTAATANPKSADELTRL 291
>gi|419849744|ref|ZP_14372771.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 35B]
gi|419851666|ref|ZP_14374588.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 2-2B]
gi|386411097|gb|EIJ25853.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 35B]
gi|386413096|gb|EIJ27721.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 2-2B]
Length = 433
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 20/252 (7%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
Query: 231 LK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 279
+ ERY P+ ++K + A IA K + A E+ E
Sbjct: 284 RSLNERVRIHTGTEQDKMFERY-APIQRVVKPKVWKQAIDRAIALKPTQWPTMPAPEQDE 342
Query: 280 VLVLDTSSNLKI 291
V++ ++++
Sbjct: 343 NGVVNAPRSMRL 354
>gi|453046792|gb|EME94507.1| ribonuclease D [Pseudomonas aeruginosa PA21_ST175]
Length = 393
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++++D L +Q E+ +D KV+H D+ R G +F
Sbjct: 66 VQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLF 123
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 124 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 182
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 183 QVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 230
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 231 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 273
>gi|296270237|ref|YP_003652869.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
gi|296093024|gb|ADG88976.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
Length = 403
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 34/202 (16%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G +FDT A+R+L ER L ++ G+ K + AD
Sbjct: 92 VLHAATQDLPCLA-ELGFRPRRLFDTELAARLLGYERVGLATMVEVVLGLRLEKGHSAAD 150
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-----------ESENSDTPLTEV 145
W RPLP++ LRYA D L+ + D + +L K S + P ++
Sbjct: 151 WSRRPLPEDWLRYAALDVEVLVELRDALYEQLVESGKLEWALEEFAAILSAPASPPKSDP 210
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++R+ + R + L+G LA+V L RD IAR D + G
Sbjct: 211 WRRTSGIHR---------------VRSLRG-------LAIVRELWTLRDEIAREADLAPG 248
Query: 206 YVLPNRTLIEIAKQLPTTAAKL 227
VLP+ +++ A + P T L
Sbjct: 249 RVLPDSAIVQAALEQPRTTKAL 270
>gi|348171326|ref|ZP_08878220.1| ribonuclease D [Saccharopolyspora spinosa NRRL 18395]
Length = 415
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + + +FDT A R+ ER SL L+ G K + AD
Sbjct: 103 VLHAASQDLPCLA-ELDLRPARLFDTELAGRLAGFERVSLGALVERMLGYRLEKGHSAAD 161
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP + L YA D L + D M+ +L K + ++ R
Sbjct: 162 WSRRPLPQDWLVYAALDVELLTALRDAMRDELERQGK---------LDWAHEEFEAVRT- 211
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ G+ + +QLA V L E RD +AR D + G VLP+ ++++
Sbjct: 212 AAPAPPRAEPWRRTSGIHRVR-SPRQLAAVRALWETRDNVARDRDLAPGRVLPDSSIVQA 270
Query: 217 AKQLPTTAAKL 227
A+ P T A L
Sbjct: 271 AQANPKTEADL 281
>gi|294815677|ref|ZP_06774320.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064]
gi|326444024|ref|ZP_08218758.1| ribonuclease D [Streptomyces clavuligerus ATCC 27064]
gi|294328276|gb|EFG09919.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064]
Length = 428
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L RD G+ +FDT A R+ R L ++ G K + D
Sbjct: 118 ILHAATQDLPCL-RDIGMAPALLFDTELAGRLAGFPRVGLGAMVESVLGYALEKGHSAVD 176
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L+ K + +
Sbjct: 177 WSTRPLPEPWLRYAALDVELLIDLRDALEEELAEQGKLEWAR-----QEFAAIAAAPPPA 231
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
K+ S +H + +Q+AVV L RD +A+ D S G VL + +IE
Sbjct: 232 PRKDPWRRTSGMHKVRRR------RQMAVVRELWTARDAVAQRRDVSPGKVLSDSAIIEA 285
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
A +P T L L H R +
Sbjct: 286 ALAVPPTVQALTALPGFGHRMGRRQL 311
>gi|227875468|ref|ZP_03993609.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
gi|227844022|gb|EEJ54190.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
Length = 397
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 24/191 (12%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+ WL + G+ +FDT A+++L ER L L G+ KE+ AD
Sbjct: 85 ILHDATTDMPWLA-EIGMRPKLLFDTELAAKLLNFERFGLGSLTEQVLGIMLEKEHSAAD 143
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D +L+ + + ++L K+ D Q
Sbjct: 144 WSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKD----------------DWAEQE 187
Query: 157 YEKELLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+E L E + + H+ G G + + LA + L + R+ I A++ + VL N
Sbjct: 188 FEHLLYFEPPAPKPDPWRHVPG-SGKVYSPRNLAALRELWQTREKICAAENLAPTKVLSN 246
Query: 211 RTLIEIAKQLP 221
LI +A LP
Sbjct: 247 PALIALAVALP 257
>gi|410624162|ref|ZP_11334969.1| ribonuclease D [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410156244|dbj|GAC30343.1| ribonuclease D [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 388
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 20/236 (8%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 84
E+ +P+ KV+H D+ L + + +FD+ A+ +L + + +L Y L+
Sbjct: 68 EILVNPSIIKVLHSCSEDLDALWFNLKVIPAPLFDSQFAANLLDMGQ-TLGYANLVEQML 126
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-ESENSDTPLT 143
V+ +K DW RPL E L+YA D YLL +Y + K+ + + E +++
Sbjct: 127 NVHVDKGESRTDWIARPLSVEQLKYAAADVFYLLPVYRQLAAKIQEIGQTEWVFAESDFL 186
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ KR+ E+ S+ +YL I G ++Q + + WR A+ D +
Sbjct: 187 SLKKRA----------EVPSDLAYLSIKNNWKIGAQSRQ--ALKEIASWRLQQAQKRDMA 234
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKLRRL--LKSKHSYIERYMGPVLSIIKNSMQNAA 257
+VL + ++E+A +LP AKL +L + K + I + +L +++N++ AA
Sbjct: 235 INFVLREQGMLEVAMKLPENKAKLFQLESITPKEARI--HTDTLLELVQNALNTAA 288
>gi|363420406|ref|ZP_09308498.1| ribonuclease D [Rhodococcus pyridinivorans AK37]
gi|359735648|gb|EHK84605.1| ribonuclease D [Rhodococcus pyridinivorans AK37]
Length = 417
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
++D + R + P L EV D + V+H AD+D+ L + G+ ++DT A R+
Sbjct: 80 VLLDPIPTRDDLAP-LTEVIND--LEWVLHSADQDLPGLA-ELGLRPAKLYDTELAGRLA 135
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
R L ++ G+ K + ADW RPLPD L YA D L+ + D M +L
Sbjct: 136 GFPRVGLAAIVAETLGLELRKGHGAADWSTRPLPDSWLNYAALDVEPLVELRDAMAREL- 194
Query: 130 SMPKESENSDTPLTEVYKRSYDVCR----QLYEKELLSENSYLHIYGLQGAGLNAQQLAV 185
E +N TE + ++ R + + S +H A + ++LA+
Sbjct: 195 ----ERQNK----TEWAAQEFEHIRLAGPPAPKPDRWRRTSKIH------AIKDRRRLAI 240
Query: 186 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
V L RD IA D + G +LP+ +I A+ PT+ +L+ L
Sbjct: 241 VRELWTTRDEIAARRDIAPGRILPDSAIIAAAEANPTSVEQLQEL 285
>gi|332670632|ref|YP_004453640.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484]
gi|332339670|gb|AEE46253.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484]
Length = 424
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L G+ +FDT +R+L +ER L ++ G+ KE+ D
Sbjct: 111 VLHAASQDLPGLTEQ-GMRPTRIFDTELGARLLGMERVGLAAVVADALGLGLAKEHSAVD 169
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP E LRYA D L+ + +++ +L+ K E + ++ R
Sbjct: 170 WSTRPLPQEWLRYAALDVEVLVPLREVLAERLAVAGK---------AEWAAQEFEAVRTA 220
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + + GL +A++LAVV L RD AR D S G VLP+ ++
Sbjct: 221 PTPP-PRVDPWRRVSGLHQVK-DARRLAVVRELWLTRDQNARQRDISPGRVLPDAAIVAA 278
Query: 217 AKQLPTTAAKLRRL 230
A+ LP + +L L
Sbjct: 279 AQALPRSVPQLTAL 292
>gi|152996550|ref|YP_001341385.1| ribonuclease D [Marinomonas sp. MWYL1]
gi|150837474|gb|ABR71450.1| ribonuclease D [Marinomonas sp. MWYL1]
Length = 384
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 22/227 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS + ++D L + + P LR + DP+ KV H D+ R G+ +
Sbjct: 56 IQISEGDKAVLIDPLSID-EWEP-LRNLMVDPSVMKVFHACSEDLDVFDRLLGVLPTPFY 113
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT Q + SL Y L+H + + K+ +DW RPL D RYA D YL
Sbjct: 114 DT-QIGEAYASAQWSLSYVKLIHEYLQIEVAKDETRSDWVQRPLTDAQKRYAALDVVYLA 172
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI---YGLQG 175
+Y + +L E++N + E D + Y+ E ++ I + L
Sbjct: 173 KVYPMQIARL-----EAKNMLGWVME----DCDSLKWQYQMNSDPEQNWDGIKTAWRLTP 223
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
AGL +L + WRD AR +D G +L +RTL +AK LPT
Sbjct: 224 AGLTLLRLLFI-----WRDGQARKEDVPKGQILKDRTLWSLAKTLPT 265
>gi|25028351|ref|NP_738405.1| hypothetical protein CE1795 [Corynebacterium efficiens YS-314]
gi|23493636|dbj|BAC18605.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 413
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 34 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 90
++ ++H A D+ WL ++ +FDT A R+ E +L ++ ++ K
Sbjct: 93 QEWIIHAAATDLPSLAWLD----LHPGTLFDTELAGRLAGFELVNLAAMVEQIFDLHLLK 148
Query: 91 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM------KIKLSSMPKESENSDTPLTE 144
+ DW RPLP+E L YA D LL + D+M + KL +E E+ T +
Sbjct: 149 GHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWAEQEFEHIRTQFAD 208
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL--NAQQLAVVAGLCEWRDVIARADDE 202
V +E L ++G G +QL V + RD IA A D
Sbjct: 209 V-----------------TEAPTLSWTDMKGVGTLKRPEQLVVAREMWMARDSIAAARDL 251
Query: 203 STGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ G VL N+ ++E A+ LP T L R+
Sbjct: 252 AAGKVLSNKVIVETARTLPRTFGDLARV 279
>gi|377575254|ref|ZP_09804248.1| ribonuclease D [Mobilicoccus pelagius NBRC 104925]
gi|377535831|dbj|GAB49413.1| ribonuclease D [Mobilicoccus pelagius NBRC 104925]
Length = 540
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 14/205 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L R+ G+ +FDT +R+ L R L ++ H+ G + KE+ D
Sbjct: 230 ILHAATQDLGCL-REVGLSPDALFDTELGARLAGLPRVGLAAVVEHYLGFSLAKEHSAVD 288
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP++ L YA D L + + M L++ K E ++ ++
Sbjct: 289 WSTRPLPEDWLIYAALDVECLAEVREAMIEDLTAQGK---------IEWARQEFEALTS- 338
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + + + + G++ + A++ L RD +AR D + G + P+ + +
Sbjct: 339 FTGHPVRTDPWRRVSGMRRL-RTPRAAAILRELWYVRDDLARDRDTAPGRIAPDAVIGAL 397
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERY 241
A PTT+A++ S H + R+
Sbjct: 398 AGAAPTTSAEV--TAASSHRAVRRH 420
>gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94]
gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1]
gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94]
gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1]
Length = 385
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM- 59
+Q+++ +VD L + + P+ R + D KV H A +DI + +L N+
Sbjct: 42 IQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLI 95
Query: 60 ----FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
FDT A+ V + S + L+ G + +K + DWR RPL D+ L YA D
Sbjct: 96 PSPVFDTQVAAMVCGFGDAISYDQLMQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADV 155
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YL IY +K +L + ++ +++YD L ++++ +
Sbjct: 156 TYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARV 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 207 RKPL---ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|343924647|ref|ZP_08764191.1| ribonuclease D [Gordonia alkanivorans NBRC 16433]
gi|343765447|dbj|GAA11117.1| ribonuclease D [Gordonia alkanivorans NBRC 16433]
Length = 428
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 16/253 (6%)
Query: 1 MQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R + F++D + + P + + + P + V+H AD+D+ L R+ G +
Sbjct: 75 IQIKRRGSGSFLLDPIADPEALAPVI-DALRGP--EWVLHAADQDLPCL-RELGFECVEL 130
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+L L + +L ++ F G+ K + ADW RPLPD+ L YA D L+
Sbjct: 131 YDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRRPLPDDWLNYAALDVEVLVE 190
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D M L+ K+ + V R R + + S +H +
Sbjct: 191 LRDAMDAALAESGKDGWAREE-FAYVLSRPPAPPR----TDRWRKTSNIHTVK------S 239
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
A+ LA V L R+ +A D + G VLP+ ++ A P + ++L RL
Sbjct: 240 ARALAAVRELWTAREELAERRDVAPGRVLPDTAIVNAATVDPKSNSELTRLPVFGGPRQR 299
Query: 240 RYMGPVLSIIKNS 252
R G LS ++ +
Sbjct: 300 RQAGIWLSALQRA 312
>gi|451336100|ref|ZP_21906661.1| Ribonuclease D [Amycolatopsis azurea DSM 43854]
gi|449421292|gb|EMD26724.1| Ribonuclease D [Amycolatopsis azurea DSM 43854]
Length = 422
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 101/225 (44%), Gaps = 23/225 (10%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + L Q+ P L EV D + V+H A +D+ L + ++ ++FDT A R+
Sbjct: 86 FLIDPIPLEGQLAP-LAEVLND--AEWVLHAASQDLPCLA-ELDLHPKSLFDTELAGRLA 141
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
ER +L L+ G K + ADW RPLP + L YA D L+ + + ++ L+
Sbjct: 142 GYERVALGTLVELLLGYQLEKGHSAADWSKRPLPVDWLNYAALDVELLIELREKLEADLA 201
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEK----ELLSENSYLHIYGLQGAGLNAQQLAV 185
+ K E ++ ++ R E S +H +A+ LA
Sbjct: 202 AQGK---------LEWAQQEFEAVRTAPPPAPRVEPWRRTSGVHKIR------SARGLAA 246
Query: 186 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
V L + RD +AR D + +LP+ +I P T +L+ L
Sbjct: 247 VRELWQARDELARKRDRAPSRILPDSAIINAVTADPKTVEQLQAL 291
>gi|259507406|ref|ZP_05750306.1| ribonuclease D [Corynebacterium efficiens YS-314]
gi|259165031|gb|EEW49585.1| ribonuclease D [Corynebacterium efficiens YS-314]
Length = 407
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 34 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 90
++ ++H A D+ WL ++ +FDT A R+ E +L ++ ++ K
Sbjct: 87 QEWIIHAAATDLPSLAWLD----LHPGTLFDTELAGRLAGFELVNLAAMVEQIFDLHLLK 142
Query: 91 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM------KIKLSSMPKESENSDTPLTE 144
+ DW RPLP+E L YA D LL + D+M + KL +E E+ T +
Sbjct: 143 GHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWAEQEFEHIRTQFAD 202
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL--NAQQLAVVAGLCEWRDVIARADDE 202
V +E L ++G G +QL V + RD IA A D
Sbjct: 203 V-----------------TEAPTLSWTDMKGVGTLKRPEQLVVAREMWMARDSIAAARDL 245
Query: 203 STGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ G VL N+ ++E A+ LP T L R+
Sbjct: 246 AAGKVLSNKVIVETARTLPRTFGDLARV 273
>gi|345850282|ref|ZP_08803281.1| ribonuclease D [Streptomyces zinciresistens K42]
gi|345638219|gb|EGX59727.1| ribonuclease D [Streptomyces zinciresistens K42]
Length = 385
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 74 VLHAATQDLPCL-REIGMAPTRLFDTELAGRLAGFPRVGLGAMVESVLGFVLEKGHSAVD 132
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 133 WSTRPLPEPWLRYATLDVELLVDLRDALEKELDRQGK---------LEWAHQEFDAIASA 183
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 184 PPAE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQTRDRIAQRRDVSPGKVLSDTAIVEA 241
Query: 217 AKQLPTTAAKL 227
A LP T L
Sbjct: 242 ALALPATVQAL 252
>gi|209694623|ref|YP_002262551.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
gi|208008574|emb|CAQ78749.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
Length = 374
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 12/195 (6%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHF 83
L ++ K+ + KV+H D+ Q G M DT + L ++ L+ +
Sbjct: 66 LWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAKLVSDY 125
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 143
GV+ +K DW RPL D+ L YA D HYLL +++ ++ +L+ E L
Sbjct: 126 LGVDLDKGESRTDWMARPLSDKQLDYAAADVHYLLPLFEKLQAELAQTEWEKAAYQESLL 185
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
V KR EK+ E +YL I LN +QLA++ +WR AR D +
Sbjct: 186 AVKKR---------EKQPDPEKAYLDIKN--AWQLNGKQLAILKMAAQWRLEEARKRDLA 234
Query: 204 TGYVLPNRTLIEIAK 218
+V+ L ++A+
Sbjct: 235 VNFVVQELNLWKLAR 249
>gi|13476899|ref|NP_108468.1| ribonuclease D [Mesorhizobium loti MAFF303099]
gi|14027660|dbj|BAB53929.1| ribonuclease D [Mesorhizobium loti MAFF303099]
Length = 383
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 28/228 (12%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 65
++D L + + P+ R + + KV H A +DI + ++L ++ FDT A
Sbjct: 52 LIDPLSPDINLAPFFR-LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVA 105
Query: 66 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 124
+ V + S + L+ G +K + DWR RPL D+ L YA D +L+ +Y +
Sbjct: 106 AMVCGFGDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHL 165
Query: 125 KIKLSSMPKESENSDTPLTEVYKRSYDVC--RQLYEKELLSENSYLHIYGLQGAGLNAQQ 182
+L+ EN L E DV R+ Y+ E+++ L+ Q+
Sbjct: 166 SAELA-----RENRAHWLNE----EMDVLTSRETYDPH--PEDAWKR---LKMRLRKPQE 211
Query: 183 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
LA+V + WR+ AR D G VL + + E+A+Q P AA L +L
Sbjct: 212 LAIVQAVAAWREREARERDVPRGRVLKDDAIYEVAQQAPRDAAALAKL 259
>gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457]
gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
gi|384211128|ref|YP_005600210.1| ribonuclease D [Brucella melitensis M5-90]
gi|384408226|ref|YP_005596847.1| ribonuclease D [Brucella melitensis M28]
gi|384444837|ref|YP_005603556.1| ribonuclease D [Brucella melitensis NI]
gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457]
gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28]
gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90]
gi|349742833|gb|AEQ08376.1| ribonuclease D [Brucella melitensis NI]
Length = 385
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM- 59
+Q+++ +VD L + + P+ R + D KV H A +DI + +L N+
Sbjct: 42 IQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLI 95
Query: 60 ----FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
FDT A+ V + S + L+ G + +K + DWR RPL D+ L YA D
Sbjct: 96 PSPVFDTQVAAMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADV 155
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YL IY +K +L + ++ +++YD L ++++ +
Sbjct: 156 TYLRDIYLYLKEELQKEGRSEWVNEEIAVLTARQTYD---------LHPDDAWRRVKARV 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 207 RKPL---ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|418051050|ref|ZP_12689135.1| 3'-5' exonuclease [Mycobacterium rhodesiae JS60]
gi|353184707|gb|EHB50231.1| 3'-5' exonuclease [Mycobacterium rhodesiae JS60]
Length = 425
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K + AD
Sbjct: 113 ILHAADQDLPCLA-EVGMRPPRLYDTELAGRLAGFERVNLAAMVQRLLGLGLAKGHGAAD 171
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLPD L YA D L+ + + ++ + ++ +D E Y C
Sbjct: 172 WSKRPLPDAWLNYAALDVEVLIALQE----AIADVLRQQHKTDWAAEEF---EYLRC--- 221
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E + + G+ N Q LA V L RD IAR D + G +LP+ +I
Sbjct: 222 AEATPTRRDRWRKTSGIHKVR-NRQALAAVRELWTVRDQIARRRDIAPGRILPDSAIIAA 280
Query: 217 AKQLPTTAAKLRRL 230
A P T L +L
Sbjct: 281 AVADPKTVEDLTKL 294
>gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840]
gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445]
gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19]
gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo]
gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A]
gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915]
gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1]
gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1]
gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33]
gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513]
gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99]
gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
gi|340790381|ref|YP_004755846.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|376273517|ref|YP_005152095.1| ribonuclease D [Brucella abortus A13334]
gi|423167117|ref|ZP_17153820.1| ribonuclease D [Brucella abortus bv. 1 str. NI435a]
gi|423170507|ref|ZP_17157182.1| ribonuclease D [Brucella abortus bv. 1 str. NI474]
gi|423173412|ref|ZP_17160083.1| ribonuclease D [Brucella abortus bv. 1 str. NI486]
gi|423177302|ref|ZP_17163948.1| ribonuclease D [Brucella abortus bv. 1 str. NI488]
gi|423179938|ref|ZP_17166579.1| ribonuclease D [Brucella abortus bv. 1 str. NI010]
gi|423183070|ref|ZP_17169707.1| ribonuclease D [Brucella abortus bv. 1 str. NI016]
gi|423185988|ref|ZP_17172602.1| ribonuclease D [Brucella abortus bv. 1 str. NI021]
gi|423189128|ref|ZP_17175738.1| ribonuclease D [Brucella abortus bv. 1 str. NI259]
gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840]
gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445]
gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19]
gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo]
gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A]
gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915]
gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1]
gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1]
gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33]
gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99]
gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513]
gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
gi|340558840|gb|AEK54078.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|363401123|gb|AEW18093.1| ribonuclease D [Brucella abortus A13334]
gi|374540555|gb|EHR12055.1| ribonuclease D [Brucella abortus bv. 1 str. NI474]
gi|374542005|gb|EHR13495.1| ribonuclease D [Brucella abortus bv. 1 str. NI435a]
gi|374542741|gb|EHR14228.1| ribonuclease D [Brucella abortus bv. 1 str. NI486]
gi|374549783|gb|EHR21225.1| ribonuclease D [Brucella abortus bv. 1 str. NI010]
gi|374550302|gb|EHR21741.1| ribonuclease D [Brucella abortus bv. 1 str. NI016]
gi|374550586|gb|EHR22022.1| ribonuclease D [Brucella abortus bv. 1 str. NI488]
gi|374558786|gb|EHR30179.1| ribonuclease D [Brucella abortus bv. 1 str. NI259]
gi|374559376|gb|EHR30764.1| ribonuclease D [Brucella abortus bv. 1 str. NI021]
Length = 385
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM- 59
+Q+++ +VD L + + P+ R + D KV H A +DI + +L N+
Sbjct: 42 IQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLI 95
Query: 60 ----FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
FDT A+ V + S + L+ G + +K + DWR RPL D+ L YA D
Sbjct: 96 PSPVFDTQVAAMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADV 155
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YL IY +K +L + ++ +++YD L ++++ +
Sbjct: 156 TYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARV 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 207 RKPL---ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|331696705|ref|YP_004332944.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190]
gi|326951394|gb|AEA25091.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190]
Length = 394
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 23/215 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ ++FDT A R+ L R L ++ G+ K + AD
Sbjct: 87 VLHAASQDLPCLA-EVGLAPTSLFDTELAGRLAGLPRVGLGPMVEQLLGLALEKGHGAAD 145
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP++ L YA D L+ + D++ L+ K +E + ++ R
Sbjct: 146 WSRRPLPEDWLVYAALDVEVLIELRDLLAGMLAEQGK---------SEFAAQEFEAVRTA 196
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ G+ + LAVV L E RD +A D + G VLP+ +++
Sbjct: 197 AAPAP-RAEPWRRTSGIHKV-RKPRALAVVRALWEARDKLAAERDIAPGRVLPDAAIVDA 254
Query: 217 AKQLPTTAAKL-----------RRLLKSKHSYIER 240
A P T L RRL + +ER
Sbjct: 255 AVNAPATPGALAAMPVFRGRSQRRLTSYWFAALER 289
>gi|374608159|ref|ZP_09680958.1| 3'-5' exonuclease [Mycobacterium tusciae JS617]
gi|373553691|gb|EHP80278.1| 3'-5' exonuclease [Mycobacterium tusciae JS617]
Length = 439
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 12/198 (6%)
Query: 33 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 92
T + V+H AD+D+ L + G+ ++DT A R+ ++ +L ++ G+ K +
Sbjct: 106 TDEWVLHAADQDLPCLA-EIGMRPTTLYDTELAGRLAGYDKVNLATMVQKLLGLQLTKGH 164
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 152
ADW RPLP + L YA D LL + + L E +N TE + ++
Sbjct: 165 GAADWSQRPLPHDWLNYAALDVEVLLDLRHAIAAVL-----EEQNK----TEWAAQEFEH 215
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R YE + + G+ +A+ LA V L RD IA+ D + G +LP+
Sbjct: 216 LRA-YEAMPTRRDRWRRTSGIHKIR-DARALAAVRELWTTRDNIAQRRDIAPGRILPDAA 273
Query: 213 LIEIAKQLPTTAAKLRRL 230
++ A P T KL L
Sbjct: 274 IVNAATVSPDTVEKLTAL 291
>gi|118379202|ref|XP_001022768.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89304535|gb|EAS02523.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 645
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 102/220 (46%), Gaps = 27/220 (12%)
Query: 17 LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL-KLERNS 75
+ VQ LRE ++ K+ DIVWLQRD+ I + N FD A+ L K E S
Sbjct: 29 ILVQTKEQLRECIQEI--KQFNKIGQTDIVWLQRDYDILISNYFDIQTAAIFLNKDESWS 86
Query: 76 LEYLLHHFCGVNA----NKEYQNADWRVRPLPDEMLRYAREDTHYLLYI-YDIMKIKLSS 130
L YLL +C K+ Q ++W RPL +E L YA D+H+L+ I Y++ L
Sbjct: 87 LTYLLQKYCDYTLEKKEKKQLQLSEWSDRPLSEEQLNYAALDSHFLIKIRYEL----LHE 142
Query: 131 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ--------GAGLNA-- 180
M K + T L +YK ++ YEK+ E Y + Q GAGL +
Sbjct: 143 MIKRLDFQRT-LELLYKMQKATSKK-YEKKPFDELFYFQAFEKQSKIQVNSIGAGLKSTT 200
Query: 181 --QQLAVV-AGLCEWRDVIARADDESTGYVLPNRTLIEIA 217
+ L ++ L E R+ + + VL +L++IA
Sbjct: 201 EWKILNIIFLELAELRESYSEQQNRYIQSVLTEESLLQIA 240
>gi|323359928|ref|YP_004226324.1| ribonuclease D [Microbacterium testaceum StLB037]
gi|323276299|dbj|BAJ76444.1| ribonuclease D [Microbacterium testaceum StLB037]
Length = 398
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V H A +D+ L R+ G+ +FDT +R+L ER L ++ G+ K + AD
Sbjct: 79 VFHAASQDLPSL-RERGLEPPRIFDTELGARLLGHERVGLGAVVEQTLGITLAKAHSAAD 137
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D +L+ + D++ +L K TE ++ + +
Sbjct: 138 WSTRPLPASWLEYAALDVEHLIDVRDVLVAELEEQQK---------TEFARQEFQAVLER 188
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 214
K E+ + + GL + LAV L + R+ AR D + G ++P+R LI
Sbjct: 189 LPKP-PREDPWRRMSGLHTVR-GRRALAVARALWQAREEYAREQDVAPGRLVPDRALI 244
>gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330]
gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686]
gi|376280430|ref|YP_005154436.1| ribonuclease D [Brucella suis VBI22]
gi|384224424|ref|YP_005615588.1| ribonuclease D [Brucella suis 1330]
gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330]
gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686]
gi|343382604|gb|AEM18096.1| ribonuclease D [Brucella suis 1330]
gi|358258029|gb|AEU05764.1| ribonuclease D [Brucella suis VBI22]
Length = 385
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM- 59
+Q+++ +VD L + + P+ R + D KV H A +DI + +L N+
Sbjct: 42 IQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLI 95
Query: 60 ----FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
FDT A+ V + S + L+ G + +K + DWR RPL D+ L YA D
Sbjct: 96 PSPVFDTQVAAMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADV 155
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YL IY +K +L + ++ +++YD L ++++ +
Sbjct: 156 TYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARV 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 207 RKPL---ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365]
gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|376274500|ref|YP_005114939.1| ribonuclease D [Brucella canis HSK A52141]
gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365]
gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|363403067|gb|AEW13362.1| ribonuclease D [Brucella canis HSK A52141]
Length = 382
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM- 59
+Q+++ +VD L + + P+ R + D KV H A +DI + +L N+
Sbjct: 42 IQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLI 95
Query: 60 ----FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
FDT A+ V + S + L+ G + +K + DWR RPL D+ L YA D
Sbjct: 96 PSPVFDTQVAAMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADV 155
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YL IY +K +L + ++ +++YD L ++++ +
Sbjct: 156 TYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARV 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 207 RKPL---ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
Length = 384
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM- 59
+Q+++ +VD L + + P+ R + D KV H A +DI + +L N+
Sbjct: 42 IQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLI 95
Query: 60 ----FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
FDT A+ V + S + L+ G + +K + DWR RPL D+ L YA D
Sbjct: 96 PSPVFDTQVAAMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADV 155
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YL IY +K +L + ++ +++YD L ++++ +
Sbjct: 156 TYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARV 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 207 RKPL---ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13]
gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653]
gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13]
gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653]
Length = 385
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM- 59
+Q+++ +VD L + + P+ R + D KV H A +DI + +L N+
Sbjct: 42 IQMASPDHTALVDALAPGLDLAPFFR-LMADEKIVKVFHAARQDI-----EIVFHLGNLI 95
Query: 60 ----FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
FDT A+ V + S + L+ G + +K + DWR RPL D+ L YA D
Sbjct: 96 PSPVFDTQVAAMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADV 155
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YL IY +K +L + ++ +++YD L ++++ +
Sbjct: 156 TYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARV 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 207 RKPL---ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|72162300|ref|YP_289957.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX]
gi|71916032|gb|AAZ55934.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX]
Length = 420
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 14/225 (6%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 84
LR+ D + V+H A +D+ L + + +FDT A R+L +R L ++
Sbjct: 99 LRDAVGD--AEMVLHAAHQDLPCLT-EVHLRPRRLFDTELAGRLLGYQRVGLGAMVERVL 155
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
GV KE+ DW RPLP++ LRYA D L+ + D + E+E ++T E
Sbjct: 156 GVRLAKEHAAVDWSTRPLPEDWLRYAALDVEVLIELRDAL---------EAELAETGKLE 206
Query: 145 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 204
++ + KE + + G+ + + L VV L RD IAR D S
Sbjct: 207 WARQEFAAVLAAPPKEP-RPDPWRRTSGIHRVR-SQRGLGVVRELWLERDRIARERDLSP 264
Query: 205 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 249
G VL + ++E A +P T +L + RY+ L I
Sbjct: 265 GRVLQDSAIVEAALAMPRTPQELTAIKTFTVRLARRYVPVWLKAI 309
>gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2]
gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella inopinata BO1]
gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella inopinata BO1]
gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2]
Length = 385
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM- 59
+Q+++ +VD L + + P+ R + D KV H A +DI + +L N+
Sbjct: 42 IQMASPDHTALVDALAPGLDLAPFFR-LMADEKIVKVFHAARQDI-----EIVFHLGNLI 95
Query: 60 ----FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
FDT A+ V + S + L+ G + +K + DWR RPL D+ L YA D
Sbjct: 96 PSPVFDTQVAAMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADV 155
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YL IY +K +L + ++ +++YD L ++++ +
Sbjct: 156 TYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARV 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 207 RKPL---ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|419847060|ref|ZP_14370262.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 1-6B]
gi|419854794|ref|ZP_14377570.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 44B]
gi|386412369|gb|EIJ27041.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 1-6B]
gi|386417071|gb|EIJ31562.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 44B]
Length = 433
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 20/252 (7%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
Query: 231 LK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 279
+ ERY P+ +K+ + A IA K + A E+ E
Sbjct: 284 RSLNERVRIHTGTEQDKMFERY-APIQRAVKSKVWKQAIDRAIALKPTQWPTMPAPEQDE 342
Query: 280 VLVLDTSSNLKI 291
V++ ++++
Sbjct: 343 NGVVNAPRSMRL 354
>gi|455644936|gb|EMF24027.1| ribonuclease D [Streptomyces gancidicus BKS 13-15]
Length = 388
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 74 VLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFPRVGLGAMVENVLGFLLEKGHSAVD 132
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K + + +D
Sbjct: 133 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LDWAWQEFDAIASA 183
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +Q+AVV L + RD IAR D S G VLP+ ++E
Sbjct: 184 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWQTRDRIARRRDVSPGKVLPDAAIVEA 241
Query: 217 AKQLPT 222
A +P
Sbjct: 242 ALAMPA 247
>gi|409390093|ref|ZP_11241864.1| ribonuclease D [Gordonia rubripertincta NBRC 101908]
gi|403199920|dbj|GAB85098.1| ribonuclease D [Gordonia rubripertincta NBRC 101908]
Length = 427
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 16/255 (6%)
Query: 1 MQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R + F++D + + P + + + P + V+H AD+D+ L R+ G +
Sbjct: 74 IQIKRRGSGSFLLDPIGDPEALAPVI-DALRGP--EWVLHAADQDLPCL-RELGFECVEL 129
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+L L + +L ++ F G+ K + ADW RPLPD+ L YA D L+
Sbjct: 130 YDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRRPLPDDWLNYAALDVEVLVE 189
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D M L+ K+ + V R R + + S +H +
Sbjct: 190 LRDAMDAALAESGKDGWAREE-FAYVLSRPPAPPR----TDRWRKTSNIHTVK------S 238
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
A+ LA V L R+ +A D + G VLP+ ++ A P + +L RL
Sbjct: 239 ARALAAVRELWTAREELAERRDVAPGRVLPDTAIVNAATVDPKSNNELTRLPIFGGPRQR 298
Query: 240 RYMGPVLSIIKNSMQ 254
R G LS ++ + +
Sbjct: 299 RQAGIWLSALQRARE 313
>gi|441169030|ref|ZP_20969102.1| ribonuclease D [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440615515|gb|ELQ78703.1| ribonuclease D [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 385
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 88/207 (42%), Gaps = 14/207 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L RD G+ +FDT A R+ R L ++ + G K + D
Sbjct: 74 VLHAATQDLPCL-RDIGMVPSRLFDTELAGRLAGFARVGLGAMVENVLGYALEKGHSAVD 132
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-ESENSDTPLTEVYKRSYDVCRQ 155
W RPLP+ LRYA D L+ + D ++ +LS K E + + +
Sbjct: 133 WSTRPLPEPWLRYAALDVELLVDLRDALEDELSRQGKLEWAHQE------FAAIAAAPPA 186
Query: 156 LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 215
K+ S +H + +Q+AVV L RD +A+ D S G VL + +IE
Sbjct: 187 PPRKDPWRRTSGMHKVRRR------RQMAVVRELWTTRDEVAQRRDISPGKVLGDAAIIE 240
Query: 216 IAKQLPTTAAKLRRLLKSKHSYIERYM 242
A LP L L H R +
Sbjct: 241 AALNLPPNTHALAALAGFGHRMGRRQL 267
>gi|379736670|ref|YP_005330176.1| ribonuclease D (modular protein) [Blastococcus saxobsidens DD2]
gi|378784477|emb|CCG04146.1| Ribonuclease D (modular protein) [Blastococcus saxobsidens DD2]
Length = 443
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A++D+ L + G+ +FDT A+R+ L R L ++ G + K + AD
Sbjct: 134 VLHAANQDLPCLA-EIGLVPARIFDTELAARLAGLPRVGLGAVVESLLGYSLQKGHSAAD 192
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+E L YA D L+ + D + L K + RQ
Sbjct: 193 WSTRPLPEEWLVYAALDVEVLVDLRDALAAILGEQGKT----------------EWARQE 236
Query: 157 YEKELLS------ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+E L + ++ + G+ G + +QL ++ + E RD +AR D + G VLP+
Sbjct: 237 FEAILAAGPPAPKQDPWRRTSGVHGL-RSRRQLGMLRAIWEARDDLARRRDIAPGRVLPD 295
Query: 211 RTLIEIAKQLPTTAAKLRRL 230
++ + P L L
Sbjct: 296 SAMVAAVQADPKNEGALLEL 315
>gi|197335934|ref|YP_002156528.1| ribonuclease D [Vibrio fischeri MJ11]
gi|423686479|ref|ZP_17661287.1| ribonuclease D [Vibrio fischeri SR5]
gi|197317424|gb|ACH66871.1| ribonuclease D [Vibrio fischeri MJ11]
gi|371494547|gb|EHN70145.1| ribonuclease D [Vibrio fischeri SR5]
Length = 373
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 12/195 (6%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHF 83
L ++ K+ + KV+H D+ Q G M DT + L ++ L+ +
Sbjct: 66 LWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAKLVSDY 125
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 143
G+ +K DW RPL D+ L YA D HYLL +++ ++ +LS E
Sbjct: 126 LGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAYQESTL 185
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
V KR EK+ +E +YL I LN +QLA++ +WR AR D +
Sbjct: 186 AVKKR---------EKQPDAEKAYLDIKN--AWQLNPKQLAILKMAAKWRLEEARKRDLA 234
Query: 204 TGYVLPNRTLIEIAK 218
+V+ +L ++A+
Sbjct: 235 VNFVVKELSLWKLAR 249
>gi|383819190|ref|ZP_09974466.1| 3'-5' exonuclease [Mycobacterium phlei RIVM601174]
gi|383337161|gb|EID15542.1| 3'-5' exonuclease [Mycobacterium phlei RIVM601174]
Length = 420
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 15/210 (7%)
Query: 21 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 80
+GP + EV + T + ++H AD+D+ L + G+ ++DT A R+ E+ +L ++
Sbjct: 97 LGP-VAEVLR--TDEWILHAADQDLPCLA-ELGMRPTRLYDTELAGRLAGYEKVNLAAMV 152
Query: 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 140
G+ K + ADW RPLPDE L YA D L+ + + L K + ++
Sbjct: 153 QRLLGLQLMKGHGAADWSKRPLPDEWLNYAALDVEVLIDLRHAVAAVLEEQGKSAWAAE- 211
Query: 141 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
++ R +E + + G+ N + LA V L RD IA+
Sbjct: 212 --------EFEHLRT-FEPTPTRRDRWRRTSGIHKVR-NQRALAAVRELWITRDQIAQRR 261
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
D + G +LP+ +I+ A P T +L L
Sbjct: 262 DIAPGRILPDSAIIQAATADPDTVERLTAL 291
>gi|417845412|ref|ZP_12491441.1| Ribonuclease D [Haemophilus haemolyticus M21639]
gi|341955248|gb|EGT81709.1| Ribonuclease D [Haemophilus haemolyticus M21639]
Length = 380
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P KV+H D++ + F C M DT +R L L ++ L L + +
Sbjct: 77 LLSNPKVLKVLHSCSEDLLVFLQKFDQLPCPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVIDDCELALA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR + D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNLLELSRLRILAQWRQNVGIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSDNLWKVAKNNPRNTSEM 268
>gi|374623203|ref|ZP_09695717.1| ribonuclease D [Ectothiorhodospira sp. PHS-1]
gi|373942318|gb|EHQ52863.1| ribonuclease D [Ectothiorhodospira sp. PHS-1]
Length = 381
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 20/256 (7%)
Query: 3 ISTRTEDFV--VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNM 59
I T D V +D L L + P L + + P KV+H A +D+ ++ RD G +
Sbjct: 45 IQVATPDLVACIDPLALE-DLAP-LDRLLRRPDLLKVLHAAGQDLEIFYHRD-GTVPAPI 101
Query: 60 FDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 117
FDT A+ +L + + Y L+ GV K + DW RPL E L YA +D YL
Sbjct: 102 FDTQVAASLLG-HGDQIGYGKLIQAVLGVELEKGHSRTDWARRPLDPEQLTYAADDVRYL 160
Query: 118 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 177
Y +++ L E T L E ++R D YE + + + G+
Sbjct: 161 AQAYPLIRDAL-----ERSGRLTWLEEDFRRLADPTG--YEPA--PDAMWRRLKGINT-- 209
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 237
L QLA+ L WR+ A D ++L + ++++A++ P+T A L R+ +
Sbjct: 210 LRGIQLAIARELARWREQEAMRADRPRRWLLQDEVILDLARRKPSTPADLERIRGLQEQT 269
Query: 238 IERYMGPVLSIIKNSM 253
+ R+ +L +++ +
Sbjct: 270 LRRHGQTLLDLVRTGL 285
>gi|59712314|ref|YP_205090.1| ribonuclease D [Vibrio fischeri ES114]
gi|59480415|gb|AAW86202.1| ribonuclease D [Vibrio fischeri ES114]
Length = 373
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 12/195 (6%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHF 83
L ++ K+ + KV+H D+ Q G M DT + L ++ L+ +
Sbjct: 66 LWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAKLVSDY 125
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 143
G+ +K DW RPL D+ L YA D HYLL +++ ++ +LS E
Sbjct: 126 LGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAYQESAL 185
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
V KR EK+ +E +YL I LN +QLA++ +WR AR D +
Sbjct: 186 AVKKR---------EKQPDAEKAYLDIKN--AWQLNPKQLAILKMAAKWRLEEARKRDLA 234
Query: 204 TGYVLPNRTLIEIAK 218
+V+ +L ++A+
Sbjct: 235 VNFVVKELSLWKLAR 249
>gi|404214776|ref|YP_006668971.1| Ribonuclease D [Gordonia sp. KTR9]
gi|403645575|gb|AFR48815.1| Ribonuclease D [Gordonia sp. KTR9]
Length = 425
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 16/253 (6%)
Query: 1 MQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R + F++D + + P + + P + V+H AD+D+ L R+ G +
Sbjct: 71 IQIKRRGSGSFLLDPIGDPAALAPVI-GALRGP--EWVLHAADQDLPCL-RELGFECVEL 126
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+L L + +L ++ F G+ K + ADW RPLPDE L YA D L+
Sbjct: 127 YDTELAGRLLGLAKVNLAAMVAEFLGLGLLKGHGAADWSRRPLPDEWLNYAALDVEVLVE 186
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D M L+ +E D E + +Y + R +I+ ++ +
Sbjct: 187 LRDAMDAALA-----AEGKDGWAREEF--AYILTRPPAPPRTDRWRKTSNIHTVK----S 235
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+ LA V L R+ +A+ D + G VLP+ ++ A P + A L +L
Sbjct: 236 TRALAAVRELWTAREELAQRRDVAPGRVLPDTAIVNAATVNPESIADLTKLPVFGGPRQR 295
Query: 240 RYMGPVLSIIKNS 252
R G LS ++ +
Sbjct: 296 RQAGIWLSALQRA 308
>gi|335420266|ref|ZP_08551304.1| ribonuclease D [Salinisphaera shabanensis E1L3A]
gi|334894625|gb|EGM32810.1| ribonuclease D [Salinisphaera shabanensis E1L3A]
Length = 382
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 16/229 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+ E ++D + L + P L + D + KV H A++D+ L + FG +F
Sbjct: 50 VQIADAHEIGLIDVIALD-DLEP-LAALLTDTSVLKVFHSAEQDLEVLYQRFGTMPAPLF 107
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ ++ L+ + + Y L+ + K + DW RPLP L YA +D YL
Sbjct: 108 DTQVAAPLVGLD-DQMGYARLIKALLDIELPKAHTRTDWSKRPLPTGALDYAADDVRYLA 166
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
Y ++ L +E+ D V +DV + + S + L
Sbjct: 167 LAYHVIGNTLVEHEREAWLVDDFEQMVQPERFDVDTSAAWRRIKSWHR-----------L 215
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
N Q +A + +WR+ A A D ++L + +IE+AK+ P A L
Sbjct: 216 NPAQQQALAEIADWREREAMASDRPRRWILADDIVIELAKRRPQNADAL 264
>gi|433459110|ref|ZP_20416963.1| ribonuclease D [Arthrobacter crystallopoietes BAB-32]
gi|432192276|gb|ELK49175.1| ribonuclease D [Arthrobacter crystallopoietes BAB-32]
Length = 442
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 116 ILHAATQDLPCLS-ALGMWPDRLFDTELAARLAGLPRVGLAAVIETLLGYTLAKEHSAAD 174
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + M L+ K + ++ R+
Sbjct: 175 WSTRPLPEPWLRYAALDVEVLIELRAAMVELLTKQDK---------LRFAEEEFEALRK- 224
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E + + GL + +QLA V L + R+ +A D + G ++P+ ++
Sbjct: 225 TEPAPPRPDPWRRTSGLHQIR-DRRQLAAVRELWQEREQLAAKRDVAPGRLIPDSAIVAA 283
Query: 217 AKQLPTTAAKL 227
A+ +P T +L
Sbjct: 284 ARAMPATVPQL 294
>gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis
biovar Abortus 2308]
Length = 385
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM- 59
+Q+++ +VD L + + P+ R + D KV H A +DI + +L N+
Sbjct: 42 IQMASPDHTALVDELAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLI 95
Query: 60 ----FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
FDT A+ V + S + L+ G + +K + DWR RPL D+ L YA D
Sbjct: 96 PSPVFDTQVAAMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADV 155
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YL IY +K +L + ++ +++YD L ++++ +
Sbjct: 156 TYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARV 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 207 RKPL---ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|317482293|ref|ZP_07941314.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
gi|316916309|gb|EFV37710.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
Length = 433
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 20/252 (7%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
Query: 231 LK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 279
+ ERY P+ +K + A IA K + A E+ E
Sbjct: 284 RSLNERVRIHTGTEQDKMFERY-APIQRAVKPKVWKQAIDRAIALKPTQWPTMPAPEQDE 342
Query: 280 VLVLDTSSNLKI 291
V++ ++++
Sbjct: 343 NGVVNAPRSMRL 354
>gi|291448576|ref|ZP_06587966.1| ribonuclease D [Streptomyces roseosporus NRRL 15998]
gi|291351523|gb|EFE78427.1| ribonuclease D [Streptomyces roseosporus NRRL 15998]
Length = 373
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 20/210 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L RD G+ ++FDT A R+ R L ++ + G K + D
Sbjct: 114 ILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAGFPRVGLGAMVENVLGYALEKGHSAVD 172
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC--- 153
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 173 WSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGK---------LEWAREEFDAIAAA 223
Query: 154 -RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
K+ S +H +Q+AVV L RD +A+ D S G VL +
Sbjct: 224 PPAPPRKDPWRRTSGMHKV------RRRRQMAVVRELWTTRDQVAQRRDVSPGKVLGDAA 277
Query: 213 LIEIAKQLPTTAAKLRRLLKSKHSYIERYM 242
++E A LP L L H R +
Sbjct: 278 IVEAALALPVDVQALTALPGFGHRMGRRQL 307
>gi|336117961|ref|YP_004572729.1| ribonuclease D [Microlunatus phosphovorus NM-1]
gi|334685741|dbj|BAK35326.1| putative ribonuclease D [Microlunatus phosphovorus NM-1]
Length = 413
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 10/181 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G+ ++FDT A+R+L R +L +L GV KE+ AD
Sbjct: 103 IIHAASQDLPCLA-EIGMTPLHLFDTELAARLLNYPRVALGTMLTELLGVRLLKEHSAAD 161
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP E L YA D L+ + D + +L + K++ ++ + R+
Sbjct: 162 WSTRPLPAEWLTYAALDVELLVELRDRLADQLVAAGKDAWAAEEFAALAAGAGAPIERR- 220
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + G+ + LA VA L + RD IAR D + +LP+ + E+
Sbjct: 221 -------TDPWRRTSGIHRVR-TRRGLAYVAELWQIRDEIARDTDRAPSRILPDVAIAEL 272
Query: 217 A 217
A
Sbjct: 273 A 273
>gi|431805515|ref|YP_007232416.1| ribonuclease D [Liberibacter crescens BT-1]
gi|430799490|gb|AGA64161.1| Ribonuclease D [Liberibacter crescens BT-1]
Length = 383
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 41/249 (16%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+T ++D L + + + + +P+ KV H A +DI + +F
Sbjct: 42 IQIATPKMGIIIDPLDSEINLSAFFN-LMLNPSIVKVFHAARQDIEIIFHMSRQIPTPIF 100
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ V R S+ Y L+ G +K + +W RPL + L YA D YL
Sbjct: 101 DTQVAAMVCGF-RESISYDTLVRKLLGQQIDKSSRFTNWHQRPLSSKQLDYALADVTYLC 159
Query: 119 YIYDIMKIKLS------------SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS 166
IY I+K +L S+ + + + P E++KR + ++
Sbjct: 160 EIYTILKAELEQTKRSEWLKEEMSILENPQTYNLPPEEIWKRIKNRLKK----------- 208
Query: 167 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226
Q+LAV+ + WR+ AR+ + ++ + TLIEIA+Q P T+
Sbjct: 209 -------------PQELAVLKYITTWREHEARSQNVPRNRIIKDETLIEIAQQQPRTSKD 255
Query: 227 LRRLLKSKH 235
+ + L+S H
Sbjct: 256 IEK-LRSIH 263
>gi|383638903|ref|ZP_09951309.1| ribonuclease D [Streptomyces chartreusis NRRL 12338]
Length = 395
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 84 VLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFPRVGLGAMVEGVLGFVLEKGHSAVD 142
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 143 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 193
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 194 PPPE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQTRDRIAQRRDVSPGKVLGDAAIVEA 251
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
A +P L L H +R +
Sbjct: 252 ALAIPANVHALAALNGFGHRMSKRQL 277
>gi|46190415|ref|ZP_00206459.1| COG0349: Ribonuclease D [Bifidobacterium longum DJO10A]
gi|189439553|ref|YP_001954634.1| ribonuclease D [Bifidobacterium longum DJO10A]
gi|189427988|gb|ACD98136.1| Ribonuclease D [Bifidobacterium longum DJO10A]
Length = 433
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 20/252 (7%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
Query: 231 LK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 279
+ ERY P+ +K + A IA K + A E+ E
Sbjct: 284 RSLNERVRIHTGTEQDKMFERY-APIQRAVKPKVWKQAIDRAIALKPTQWPTMPAPEQDE 342
Query: 280 VLVLDTSSNLKI 291
V++ ++++
Sbjct: 343 NGVVNAPRSMRL 354
>gi|227546007|ref|ZP_03976056.1| ribonuclease D [Bifidobacterium longum subsp. longum ATCC 55813]
gi|239621937|ref|ZP_04664968.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|322688886|ref|YP_004208620.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
gi|322690861|ref|YP_004220431.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
gi|384201762|ref|YP_005587509.1| exonuclease [Bifidobacterium longum subsp. longum KACC 91563]
gi|227213641|gb|EEI81490.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
gi|239515128|gb|EEQ54995.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|320455717|dbj|BAJ66339.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
1217]
gi|320460222|dbj|BAJ70842.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
gi|338754769|gb|AEI97758.1| exonuclease [Bifidobacterium longum subsp. longum KACC 91563]
Length = 433
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 20/252 (7%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
Query: 231 LK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 279
+ ERY P+ +K + A IA K + A E+ E
Sbjct: 284 RSLNERVRIHTGTEQDKMFERY-APIQRAVKPKVWKQAIDRAIALKPTQWPTMPAPEQDE 342
Query: 280 VLVLDTSSNLKI 291
V++ ++++
Sbjct: 343 NGVVNAPRSMRL 354
>gi|23465521|ref|NP_696124.1| hypothetical protein BL0948 [Bifidobacterium longum NCC2705]
gi|23326181|gb|AAN24760.1| narrowly conserved hypothetical protein [Bifidobacterium longum
NCC2705]
Length = 433
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
>gi|171910647|ref|ZP_02926117.1| ribonuclease D, putative [Verrucomicrobium spinosum DSM 4136]
Length = 381
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 20/217 (9%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 70
++D L L +GP L V + H AD D+ L+R ++ DT A+R+
Sbjct: 71 LIDPLVLS-DLGPLLEVV---DNAEVWFHSADYDLTLLKRTCNWTPTHLKDTQVAARLTG 126
Query: 71 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 130
L L+ CGV K Q DW +RPLP +M YA +D YL + DI L +
Sbjct: 127 HRTFGLAALVEQHCGVTLCKSSQKEDWSLRPLPAKMQAYAVDDVRYLGRLVDIFMTDLVA 186
Query: 131 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLS--ENSYLHIYGLQGAG-LNAQQLAVVA 187
+ +++S + R +++LS E + + G+G L LA++
Sbjct: 187 KDR---------VTWFEQSCESLR----RDVLSRQEKDRDEAWRISGSGRLRPAGLAILR 233
Query: 188 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 224
+ WRD IAR D VL N+ ++ +A + T+
Sbjct: 234 EVWNWRDGIAREKDVPPFRVLNNQQMLTMATEFETSG 270
>gi|408791723|ref|ZP_11203333.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463133|gb|EKJ86858.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 406
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 6/123 (4%)
Query: 1 MQISTRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 58
+QI++ +++++D LK+ +GP +FKD K+ H A DI L+RDFG N
Sbjct: 48 IQINSNGKNYLIDPLKITNLSALGP----LFKDENILKIFHSAQDDIKALKRDFGFEFVN 103
Query: 59 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT +SR+L LE++SL +++ H+ V +K Q ++W +RPL + L+YA DT YL
Sbjct: 104 TADTMISSRLLSLEQSSLSHVVEHYHKVTLSKVEQKSNWEIRPLQKQQLKYAALDTAYLE 163
Query: 119 YIY 121
I+
Sbjct: 164 SIW 166
>gi|407983300|ref|ZP_11163957.1| 3'-5' exonuclease family protein [Mycobacterium hassiacum DSM
44199]
gi|407375193|gb|EKF24152.1| 3'-5' exonuclease family protein [Mycobacterium hassiacum DSM
44199]
Length = 426
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 12/198 (6%)
Query: 33 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 92
T + V+H AD+D+ L + G+ ++DT A R+ ++ +L + G+ K +
Sbjct: 102 TDEWVLHAADQDLPCLA-ELGMRPPKLYDTELAGRLAGHDKVNLAAEVQRLLGLQLTKGH 160
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 152
ADW RPLP E L YA D LL + + + L+ K TE + ++
Sbjct: 161 GAADWSKRPLPPEWLNYAALDVEVLLELREAIAKVLAEQGK---------TEWAAQEFEY 211
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R L E + + + G+ + + LA V L RD IA+ D + G +LP+
Sbjct: 212 LRTL-EPQPTRRDRWRRTSGIHKVR-DRRALAAVRELWLVRDQIAQRRDIAPGRILPDSA 269
Query: 213 LIEIAKQLPTTAAKLRRL 230
+IE A P T KL L
Sbjct: 270 IIEAALADPDTVEKLTAL 287
>gi|328543996|ref|YP_004304105.1| ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
Length = 394
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 26/237 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ + +VD L + + P+L ++ ++ KV H A +DI + G+ +F
Sbjct: 42 IQMAGPDDAVIVDALADGLDLAPFL-DLMRNERVTKVFHAARQDIEIVYHLGGLIPHPLF 100
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ G +K + DW RPL + L YA D YL
Sbjct: 101 DTQVAAMVCGFGDSISYDQLVQRITGARIDKSSRFTDWARRPLTQKQLDYALADVTYLRD 160
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-SENSYLH--IYGLQGA 176
+Y +K L+ + D E E+L SE +Y + Q
Sbjct: 161 VYRFLKANLAEQDRSHWVED------------------EMEILTSEGTYRTEPVNAWQRL 202
Query: 177 GLNAQ---QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + +LAV+ + WR++ A++ D VL + + EIA Q P TA L RL
Sbjct: 203 KMRVRKPVELAVLMEVAAWREIEAQSRDVPRSRVLKDDAIYEIAAQQPQTAEALSRL 259
>gi|408681544|ref|YP_006881371.1| Ribonuclease D [Streptomyces venezuelae ATCC 10712]
gi|328885873|emb|CCA59112.1| Ribonuclease D [Streptomyces venezuelae ATCC 10712]
Length = 427
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L RD G+ ++FDT A R+ R L ++ G K + D
Sbjct: 117 ILHAATQDLPCL-RDIGMLPTSLFDTELAGRLAGFPRVGLGAMVESVLGYALEKGHSAVD 175
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC--- 153
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 176 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWAHQEFDAIAAA 226
Query: 154 -RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
K+ S +H +Q+AVV L RD +A+ D S G VL +
Sbjct: 227 PPAPPRKDPWRRTSGMHKV------RRRRQMAVVRELWTARDKVAQRRDVSPGKVLSDAA 280
Query: 213 LIEIAKQLPTTAAKLRRLLKSKHSYIERYM 242
++E A +P L L H R +
Sbjct: 281 IVEAALAVPVNVTALMALPGYGHRMGRRQL 310
>gi|254514489|ref|ZP_05126550.1| ribonuclease D [gamma proteobacterium NOR5-3]
gi|219676732|gb|EED33097.1| ribonuclease D [gamma proteobacterium NOR5-3]
Length = 372
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 24/257 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ + +++D LK+ G LR + D KV+H D+ + G+ +
Sbjct: 44 LQLCSDDHAWLIDPLKVTDLDG--LRALMTDTGCWKVLHSCSEDLEVFRHWLGVVPSPLI 101
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT +A+ +L + L Y L+ GV +K +DW RPL D YA D L+
Sbjct: 102 DTQRATALLG-KGFGLGYRALIELLLGVELDKGETRSDWLKRPLSDSQCHYAALDVLKLV 160
Query: 119 YIYDIMK-IKLSS--MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG 175
+ I+K + LS M + + + + +R D+ R++
Sbjct: 161 PAWKILKDLALSQGRMEWILDEGEEAIRLLNERDRDIYRRVK----------------SA 204
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 235
+ L+ +QL + LCEWR+ +AR+ D+ G+++ ++ I IA+ +P L L
Sbjct: 205 SRLSPRQLDALRRLCEWREALARSVDKPRGWIVEDKACIAIAQSMPADIEALTDLDVLPA 264
Query: 236 SYIERYMGPVLSIIKNS 252
S I + +L+ ++ +
Sbjct: 265 SVIRKQGDTLLACVRGA 281
>gi|398781584|ref|ZP_10545613.1| ribonuclease D [Streptomyces auratus AGR0001]
gi|396997313|gb|EJJ08278.1| ribonuclease D [Streptomyces auratus AGR0001]
Length = 385
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ RD G+ +FDT A R+ R L ++ + G K + D
Sbjct: 74 VLHAATQDLP-CMRDIGMVPTRLFDTELAGRLAGFARVGLGAMVENVLGFALEKGHSAVD 132
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L E + + +
Sbjct: 133 WSTRPLPEPWLRYAALDVELLVDLRDALEEEL-----ERQGKREWARQEFAAIAAAPPPP 187
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
K+ S +H +Q+AVV L RD +A+ D S G VL + ++E
Sbjct: 188 PRKDPWRRTSGMHKV------RRRRQMAVVRELWTARDQVAQRRDVSPGKVLGDAAIVEA 241
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
A LP + L L H R +
Sbjct: 242 ALSLPPNSHALAALPGFGHRMGRRQL 267
>gi|375264824|ref|YP_005022267.1| ribonuclease D [Vibrio sp. EJY3]
gi|369840148|gb|AEX21292.1| ribonuclease D [Vibrio sp. EJY3]
Length = 388
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 14/239 (5%)
Query: 21 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYL 79
+ P++ E+ KD + KV+H D+ Q FG M DT + L ++ L
Sbjct: 79 MSPFV-ELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATL 137
Query: 80 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 139
+ + GV +K DW RPL + L YA D HYLL +Y+I+ K+ ++
Sbjct: 138 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEILLDKV---------TE 188
Query: 140 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 199
++ D+ +E+ EN+YL I G L +LAV+ L WR A
Sbjct: 189 AGWWHAVQQESDLLVSKRIREVNEENAYLDIKG--AWQLKPAELAVLKPLATWRYRQAIK 246
Query: 200 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
D + +V L+ +A+ L T+ K + R+ + I+K + Q A+
Sbjct: 247 RDLALNFVFKEGDLLTVAR-LGLTSFKKMEAEGIDIRAVNRHGAKIADIVKKAKQTPAD 304
>gi|329940178|ref|ZP_08289460.1| ribonuclease [Streptomyces griseoaurantiacus M045]
gi|329301004|gb|EGG44900.1| ribonuclease [Streptomyces griseoaurantiacus M045]
Length = 428
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 23/215 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMRPTRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 176
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWALQEFDAIASA 227
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +Q+AVV L + RD IA+ D S G VL + ++E
Sbjct: 228 PPAE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWQTRDRIAQRRDVSPGKVLGDTAIVEA 285
Query: 217 AKQLPTTAAKL-----------RRLLKSKHSYIER 240
A LP L RR L+ S ++R
Sbjct: 286 ALALPPNVHALAGLNGFGHRMGRRQLEQWQSAVDR 320
>gi|296453936|ref|YP_003661079.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
gi|296183367|gb|ADH00249.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
Length = 433
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETLMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARRYDIAPSLLLTDSSIIEAATNKPHNAAQFRAL 283
>gi|220912416|ref|YP_002487725.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6]
gi|219859294|gb|ACL39636.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6]
Length = 443
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAATQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 152
W RPLP+ LRYA D L + + + L + K E E + + D
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLSELREELVELLQADGKLEYAEQEFAAILAAGIAPPRLDP 238
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R+ S LH + +QLA V L RD +AR D + G ++P+
Sbjct: 239 WRK---------TSGLHQIR------DRRQLAAVRELWLERDSLARKRDVAPGRLIPDSA 283
Query: 213 LIEIAKQLPTTAAKL 227
L+ AK +P+T +L
Sbjct: 284 LVSAAKAMPSTVPQL 298
>gi|291517068|emb|CBK70684.1| Ribonuclease D [Bifidobacterium longum subsp. longum F8]
Length = 398
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 77 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 136
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 137 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 188
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 189 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 248
>gi|404258462|ref|ZP_10961781.1| ribonuclease D [Gordonia namibiensis NBRC 108229]
gi|403402976|dbj|GAC00191.1| ribonuclease D [Gordonia namibiensis NBRC 108229]
Length = 426
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 16/231 (6%)
Query: 1 MQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI R + F++D + + P + + + P + V+H AD+D+ L R+ G +
Sbjct: 74 IQIKRRGSGSFLLDPIADPEALAPVI-DALRGP--EWVLHAADQDLPCL-RELGFECVEL 129
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
+DT A R+L L + +L ++ F G+ K + ADW RPLPD+ L YA D L+
Sbjct: 130 YDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRRPLPDDWLNYAALDVEVLVE 189
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D M L+ K+ + V R R + + S +H +
Sbjct: 190 LRDAMDAALAESGKDGWAREE-FAYVLARPPAPPR----TDRWRKTSNIHTVK------S 238
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
A+ LA V L R+ +A D + G VLP+ ++ A P + +L RL
Sbjct: 239 ARALAAVRELWTAREELAERRDVAPGRVLPDTAIVNAATVDPKSNNELTRL 289
>gi|306836261|ref|ZP_07469243.1| ribonuclease D [Corynebacterium accolens ATCC 49726]
gi|304567853|gb|EFM43436.1| ribonuclease D [Corynebacterium accolens ATCC 49726]
Length = 406
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 16/197 (8%)
Query: 37 VMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
++H A D+ WL G++ +FDT A+R R +L ++ V K +
Sbjct: 90 IIHAAPSDLPSLGWL----GLFPGTLFDTELAARFTGFPRTNLGAIIAELFDVQLGKGHG 145
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 153
+ DW + L +EM YA D LL + ++ L+ K + V K ++D
Sbjct: 146 DDDWSIPQLSEEMRAYAALDVELLLELATTLRDILAEQEKLEWMLEECAAIVAKHAHDTS 205
Query: 154 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
Q S+ I G+ N Q A L RD I+R D + G VLPN+ L
Sbjct: 206 PQ--------PGSWRDIKGVSSLK-NGNQRAAAQSLWNLRDDISRRTDTAPGRVLPNKVL 256
Query: 214 IEIAKQLPTTAAKLRRL 230
+EIA+ LP+T +L R+
Sbjct: 257 VEIARVLPSTQPQLTRI 273
>gi|399524453|ref|ZP_10764999.1| 3'-5' exonuclease [Atopobium sp. ICM58]
gi|398374379|gb|EJN52034.1| 3'-5' exonuclease [Atopobium sp. ICM58]
Length = 414
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 24/224 (10%)
Query: 3 ISTRTED---FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+ R ED F++DT L P L + ++H + +D+ L R G+ ++
Sbjct: 70 VQIRREDVGTFLIDTHAL-----PDLSVLQPGVEDVWLLHDSLQDLPNL-RQVGLRAPSL 123
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+R++ LER L + G+ K++Q +DW VRPLP E LRYA D L
Sbjct: 124 FDTEVAARLVGLERFGLAAVAEQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTE 183
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-- 177
+Y + +L M + E ++ + + S+ L GAG
Sbjct: 184 LYYRLSRRLDQMGR---------WEWAQQEFAYALTVAPPAAKSD----RWRSLPGAGKI 230
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
+ + L V+ L E R+ IAR D S G ++ N L+ A P
Sbjct: 231 RSRRGLGVLKALWETRESIARRIDMSPGRLVRNAALVRAASNPP 274
>gi|402849302|ref|ZP_10897541.1| Ribonuclease D [Rhodovulum sp. PH10]
gi|402500432|gb|EJW12105.1| Ribonuclease D [Rhodovulum sp. PH10]
Length = 406
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 26/233 (11%)
Query: 2 QISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 61
Q++ E VVD L + + P+ + D KV H A +DI + G+ +FD
Sbjct: 67 QMACVGEAVVVDALADGIDLSPFW-ALMADQRVVKVFHAARQDIEIVWHMAGLIPQPLFD 125
Query: 62 TGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
T A+ VL + S + L+ CG N +K ++ DW RPL + YA D +L +
Sbjct: 126 TQVAAMVLGYGDAISYDQLVQRVCGTNLDKSHRFTDWSRRPLTPAQIMYATSDVTHLRDV 185
Query: 121 YDIMKIKLSS------MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
Y + L+ + +E E +P T Y E E ++ L+
Sbjct: 186 YVALSADLAKRGRANWVDEEMEVLTSPST-------------YRAE--PETAWER---LK 227
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
++LA++ + WR+ A+A D G VL + + EIA Q PTT +L
Sbjct: 228 SRVRKPKELAILIEVAAWREREAQARDVPRGRVLKDDVIGEIALQAPTTPERL 280
>gi|403526765|ref|YP_006661652.1| ribonuclease D [Arthrobacter sp. Rue61a]
gi|403229192|gb|AFR28614.1| putative ribonuclease D [Arthrobacter sp. Rue61a]
Length = 453
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAASQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L + + + L + K E ++ + R
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLAELREELIELLEADGK-LEYAEQEFAGILAAGLPAPR-- 235
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + S LH + +QLA V L RD +AR D + G ++P+ L+
Sbjct: 236 --VDPWRKTSGLHQI------RDRRQLAAVRELWLERDQLARKRDVAPGRLIPDSALVAA 287
Query: 217 AKQLPTTAAKL 227
AK +PTT +L
Sbjct: 288 AKAMPTTVPQL 298
>gi|421615623|ref|ZP_16056645.1| ribonuclease D [Pseudomonas stutzeri KOS6]
gi|409782427|gb|EKN61988.1| ribonuclease D [Pseudomonas stutzeri KOS6]
Length = 359
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 17/232 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++D L +R V +DP KV+H D+ L R G +F
Sbjct: 46 VQVGDGRRAYLIDPLAVRNWTA--FAGVLQDPAVVKVLHACSEDLEVLLRLTGSLPQPLF 103
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + S+ Y L+ G+ K +DW RPL + +RYA ED +L
Sbjct: 104 DTQLAAGYLNIG-FSMGYSRLVQAVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLA 162
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y+ + +PK SE+ L E ++ L ++E E +Y + Q L
Sbjct: 163 ELYEAL------LPKLSEDKRAWLLE---DGAELVANL-QRESDPEEAYREVK--QAWRL 210
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
QQLAV+ L WR+ ARA ++ VL +L +A+ P L R+
Sbjct: 211 KPQQLAVLKALTAWRERQARARNQPRNRVLREASLWPLARTQPRDLVTLARI 262
>gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
17982]
gi|153798567|gb|EDN80987.1| putative ribonuclease D [Actinomyces odontolyticus ATCC 17982]
Length = 414
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 3 ISTRTED---FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+ R ED F++DT L P L + ++H +D+ L R G+ +
Sbjct: 70 VQIRREDVGTFLIDTHAL-----PDLSVLQPGVEDVWLLHDCLQDLPNL-RQVGLRPSTL 123
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+R++ LER L ++ G+ K++Q +DW VRPLP E LRYA D L
Sbjct: 124 FDTEIAARLIGLERFGLAAVVEQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTE 183
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGL 173
+Y + +L M + ++ +Q + L + + I G
Sbjct: 184 LYYRLSKRLDEMGR----------------WEWAQQEFGYALSVTPPGPKPDRWRSIPG- 226
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
G + + LAV+ L E R+ IAR D S G ++ N L+ A P
Sbjct: 227 AGKIRSRRGLAVLKALWETRESIARRIDLSPGRLVRNAALVRAASNPP 274
>gi|119962304|ref|YP_947556.1| ribonuclease D [Arthrobacter aurescens TC1]
gi|119949163|gb|ABM08074.1| putative ribonuclease D [Arthrobacter aurescens TC1]
Length = 453
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAASQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L + + + L + K E ++ + R
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLAELREELIELLEADGK-LEYAEQEFAGILAAGLPAPR-- 235
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + S LH + +QLA V L RD +AR D + G ++P+ L+
Sbjct: 236 --VDPWRKTSGLHQI------RDRRQLAAVRELWLERDQLARKRDVAPGRLIPDSALVAA 287
Query: 217 AKQLPTTAAKL 227
AK +PTT +L
Sbjct: 288 AKAMPTTVPQL 298
>gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries]
gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries]
Length = 401
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 29/227 (12%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ + VVD L R+ + P L+E+F D KV H +D+ L + F +F
Sbjct: 48 LQMAYQGGQCVVDVLDERLDLSP-LQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIF 106
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTHYL 117
DT AS + + NS+ Y L+ F GV NK ++ DW RPL + +RYA +D YL
Sbjct: 107 DTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYL 166
Query: 118 LYIYDIM------KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 171
+Y+++ K +L+ +E EN + E + +YD LL +
Sbjct: 167 HELYEVLLGILTAKERLTWFLEEMEN----IAEAFVDNYD--------SLLEGMDFF--- 211
Query: 172 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 218
L + + + EWR+ +AR + + V+ +++++ K
Sbjct: 212 ----PELGESEAIIARSIIEWREKVARLFNVNRNIVMHSKSVLLATK 254
>gi|373252634|ref|ZP_09540752.1| ribonuclease D [Nesterenkonia sp. F]
Length = 417
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 21/196 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G++ +FDT A+R+ L R L ++ V KE+ AD
Sbjct: 103 ILHAASQDLPCLA-ELGMHPHRLFDTELAARMAGLPRVGLGAVVETLLNVRLAKEHSAAD 161
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY-----D 151
W RPLP + LRYA D L+ ++ +L+ M L E KRS+ +
Sbjct: 162 WSRRPLPKDWLRYAALDVELLVE----LRTELTRM----------LDEQGKRSWADEEFE 207
Query: 152 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 211
R + + ++ + G+ + ++LAV+ L RD +A D S G++LP+
Sbjct: 208 HLRTHRPQTVPRKDRWRKTSGINKIK-SPRRLAVLRELWRARDHLAERRDVSPGHILPDS 266
Query: 212 TLIEIAKQLPTTAAKL 227
L+ A +P T L
Sbjct: 267 ALVAAAAAMPRTVPDL 282
>gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
Length = 381
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 23/226 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+ + V+D L + + P L+E+F + KV H +D+ L F +F
Sbjct: 44 LQIAYENKQCVIDALAEGIDLTP-LQEIFDNTQIFKVFHDCRQDLDALSLLFESLPRPIF 102
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTHYL 117
DT A+ + + NS+ Y L+ F GV NK ++ DW RPL + +RYA +D YL
Sbjct: 103 DTQIAAMLCEYHENSVGYSKLVEQFLGVKLNKMPFKRVDWSKRPLTESEVRYALDDVIYL 162
Query: 118 LYIYDIMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
+Y I++ L+S + S E D + V Y L S Y
Sbjct: 163 YKLYGILRDILTSKGRLSWYMEEMDCIVDSVSDN--------YTTILESMECY------- 207
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 220
A L Q+ + + EWR+ +AR + + ++ R ++ I K
Sbjct: 208 -ADLTEQEANIARSVVEWRERVARLLNINRNIIMNARDVLNITKDF 252
>gi|333369485|ref|ZP_08461599.1| ribonuclease D [Psychrobacter sp. 1501(2011)]
gi|332971116|gb|EGK10083.1| ribonuclease D [Psychrobacter sp. 1501(2011)]
Length = 437
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 51 DFGIY--------LCNMFDTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRP 101
D GI+ L N+FDT A L + + + L V+ +K +DW RP
Sbjct: 130 DLGIFYLLSESPALTNVFDTQIALSYLTGQLQMGYQQALSQELDVHVDKGESQSDWLARP 189
Query: 102 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 161
L E YA +D YLL +YDI++ +L+ K+S + + + C QLY KEL
Sbjct: 190 LTHEQESYAIDDVRYLLNLYDILQQQLT---KQS---------LLDKVIEDC-QLYTKEL 236
Query: 162 L------SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 215
+ +YL + + G +Q+AV+ + WR+ +ARA ++ ++L + + +
Sbjct: 237 YEAANIEDDATYLAMADFRYTG---EQMAVLQAVSSWREALARATNQPKTFILKKQAVRD 293
Query: 216 IAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
+ + P + +L + S I Y ++ II +
Sbjct: 294 VVVEFPKSVKQLTQKTTMHRSMIHLYGEELIDIINKA 330
>gi|302541899|ref|ZP_07294241.1| putative ribonuclease D [Streptomyces hygroscopicus ATCC 53653]
gi|302459517|gb|EFL22610.1| putative ribonuclease D [Streptomyces himastatinicus ATCC 53653]
Length = 425
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 88/207 (42%), Gaps = 14/207 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L RD G+ +FDT A R+ R L ++ + G K + D
Sbjct: 114 VLHAATQDLPCL-RDIGMVPDRLFDTELAGRLAGFARVGLGAMVENILGYALEKGHSAVD 172
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-ESENSDTPLTEVYKRSYDVCRQ 155
W RPLP+ L YA D L+ + D ++ +L+ K E + + +
Sbjct: 173 WSTRPLPEPWLHYAALDVELLVDLRDALEEELTRQGKLEWAHQE------FAAIAAAPPA 226
Query: 156 LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 215
K+ S +H + +Q+AVV L RD IA+ D S G VL + ++E
Sbjct: 227 PPRKDPWRRTSGMHKVRRR------RQMAVVRELWTARDRIAQRRDVSPGKVLGDAAIVE 280
Query: 216 IAKQLPTTAAKLRRLLKSKHSYIERYM 242
A LP A L L H R +
Sbjct: 281 AALALPVNARALSALSGFGHRMSRRQL 307
>gi|302846316|ref|XP_002954695.1| hypothetical protein VOLCADRAFT_106481 [Volvox carteri f.
nagariensis]
gi|300260114|gb|EFJ44336.1| hypothetical protein VOLCADRAFT_106481 [Volvox carteri f.
nagariensis]
Length = 1044
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 67
++VD L LR VG L + DP KV+HG D+VWLQRDF +YL N+FDT +AS+
Sbjct: 280 WLVDALALRGHVGAALGGLMADPRVVKVLHGGGNDVVWLQRDFRVYLVNVFDTEKASQ 337
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 52 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY---QNADWRVRPLPDEMLR 108
F ++C +VL E +L LL G++ E Q ADWR RPLP +LR
Sbjct: 384 FEAHMCGPACFWLFLKVLGYENRALASLLSRIVGLDVGAEKAAGQRADWRRRPLPPALLR 443
Query: 109 YAREDTHYLLYIYDIMKIKLSSM 131
YA D YL Y+ D+++ +L+++
Sbjct: 444 YAAADVAYLPYLADVLRRELAAL 466
>gi|359421116|ref|ZP_09213046.1| putative ribonuclease [Gordonia araii NBRC 100433]
gi|358242981|dbj|GAB11115.1| putative ribonuclease [Gordonia araii NBRC 100433]
Length = 402
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L R+ G ++DT A R+L LER +L + HF G K + AD
Sbjct: 94 VLHAADQDLPCL-RELGFECGTLYDTELAGRLLGLERVNLAAMTAHFLGRELRKGHGAAD 152
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP + L YA D L+ + D M L K + + Y R
Sbjct: 153 WSKRPLPADWLNYAALDVELLVELRDAMDSALRGAGKNDWAAQ-------EFEYIRQRPP 205
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+I+ L+ +QLA V L R+ +A+ D + G VLP+ +++
Sbjct: 206 APPRPDRWRRTSNIHSLK----TPRQLAAVRELWLAREDLAQHRDVAPGRVLPDAAIVDA 261
Query: 217 AKQLPTTAAKLRRL 230
A PTT +L L
Sbjct: 262 AAANPTTVDELTAL 275
>gi|453050614|gb|EME98147.1| ribonuclease D [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 395
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 84 VLHAATQDLPCL-REIGMTPARLFDTELAGRLAGFARVGLGAMVENVLGYALEKGHSAVD 142
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + + ++ +L K E ++ +D
Sbjct: 143 WSTRPLPEPWLRYAALDVELLIDLRNALEKELDRQGK---------LEWARQEFDAI-AA 192
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
++ + G+ +Q+AVV L RD IA+ D S G VL + +IE
Sbjct: 193 APPAPPRKDPWRRTSGMHKV-RRRRQMAVVRELWTARDQIAQKRDVSPGKVLGDGAIIEA 251
Query: 217 AKQLPTTAAKLRRL 230
A +P A L L
Sbjct: 252 ALNMPANAHALAAL 265
>gi|302537554|ref|ZP_07289896.1| ribonuclease D [Streptomyces sp. C]
gi|302446449|gb|EFL18265.1| ribonuclease D [Streptomyces sp. C]
Length = 428
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L R+ G+ ++FDT A R+ R L ++ G K + D
Sbjct: 118 ILHAATQDLPCL-REIGMVPTSLFDTELAGRLAGFPRVGLGAMVEGVLGYALEKGHSAVD 176
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYD----V 152
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
K+ S +H +Q+AVV L E RD IA+ D S G VL +
Sbjct: 228 PPAPPRKDPWRRTSGMHKV------RRRRQMAVVRELWESRDRIAQRRDVSPGKVLGDAA 281
Query: 213 LIEIAKQLPTTAAKLRRL 230
++E A LP L L
Sbjct: 282 IVEAALALPVNVHALSSL 299
>gi|418295976|ref|ZP_12907820.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
gi|355539408|gb|EHH08646.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
Length = 386
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P L E+ +P KV H A +DI + G+ +F
Sbjct: 40 VQMASPTLEVLVDPLAKGIDLTP-LFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V +K + DW RPL ++ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L E E LTE D+ ++ ++++L L+
Sbjct: 159 VYLALKAQL-----EREGRSLWLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 207 PTELAILKFVAAWREREARSRNVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|302846314|ref|XP_002954694.1| hypothetical protein VOLCADRAFT_106479 [Volvox carteri f.
nagariensis]
gi|300260113|gb|EFJ44335.1| hypothetical protein VOLCADRAFT_106479 [Volvox carteri f.
nagariensis]
Length = 756
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 67
++VD L LR VG L + DP KV+HG D+VWLQRDF +YL N+FDT +AS+
Sbjct: 280 WLVDALALRGHVGAALGGLMADPRVVKVLHGGGNDVVWLQRDFRVYLVNVFDTEKASQ 337
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 52 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY---QNADWRVRPLPDEMLR 108
F ++C +VL E +L LL G++ E Q ADWR RPLP +LR
Sbjct: 384 FEAHMCGPACFWLFLKVLGYENRALASLLSRIVGLDVGAEKAAGQRADWRRRPLPPALLR 443
Query: 109 YAREDTHYLLYIYDIMKIKLSSM 131
YA D YL Y+ D+++ +L+++
Sbjct: 444 YAAADVAYLPYLADVLRRELAAL 466
>gi|312132962|ref|YP_004000301.1| rnd [Bifidobacterium longum subsp. longum BBMN68]
gi|311773944|gb|ADQ03432.1| Rnd [Bifidobacterium longum subsp. longum BBMN68]
Length = 408
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 51 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 110
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 87 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 146
Query: 111 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 170
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 147 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 198
Query: 171 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 199 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 258
>gi|359776723|ref|ZP_09280026.1| putative ribonuclease D [Arthrobacter globiformis NBRC 12137]
gi|359305860|dbj|GAB13855.1| putative ribonuclease D [Arthrobacter globiformis NBRC 12137]
Length = 443
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAASQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L + + + L + K E ++ + R
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLTELREELIELLEADGK-LEYAEQEFAAILSAGLAAPR-- 235
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + S LH + +QLA V L RD +A+ D + G ++P+ L+
Sbjct: 236 --VDPWRKTSGLHQIR------DRRQLAAVRELWLERDALAQKRDVAPGRLIPDSALVAA 287
Query: 217 AKQLPTTAAKL 227
AK +PTT +L
Sbjct: 288 AKAMPTTVPQL 298
>gi|163841118|ref|YP_001625523.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209]
gi|162954594|gb|ABY24109.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209]
Length = 480
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 34/202 (16%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G++ +FDT A+R+ L + L ++ G KE+ AD
Sbjct: 155 ILHAASQDLPCLS-ELGMWPSALFDTELAARIAGLPKVGLAAVVEQLLGFGLAKEHSAAD 213
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKI------KLSSMPKE-----SENSDTPLTEV 145
W RPLP+ LRYA D L + + + KL +E + P +
Sbjct: 214 WSTRPLPEPWLRYAALDVEVLAELREELIELLEADGKLEWATQEFQAILAAGPPPPRIDP 273
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++R+ V QL ++ +QLA V L RD +A+ D + G
Sbjct: 274 WRRTSGV-HQLRDR---------------------KQLAAVRQLWLERDALAQNRDVAPG 311
Query: 206 YVLPNRTLIEIAKQLPTTAAKL 227
+LP+ L+ A+ +P T +L
Sbjct: 312 RLLPDSALVAAARAMPDTVPQL 333
>gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
Length = 386
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 29/227 (12%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ + VVD L R+ + P L+E+F D KV H +D+ L + F +F
Sbjct: 48 LQMAYQGGQCVVDVLDERLDLSP-LQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIF 106
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTHYL 117
DT AS + + NS+ Y L+ F GV NK ++ DW RPL + +RYA +D YL
Sbjct: 107 DTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYL 166
Query: 118 LYIYDIM------KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 171
+Y+++ K +L+ +E EN + E + +YD LL +
Sbjct: 167 HELYEVLLGILTAKGRLTWFLEEMEN----IAEAFVDNYD--------SLLEGMDFF--- 211
Query: 172 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 218
L + + + EWR+ +AR + + V+ +++++ K
Sbjct: 212 ----PELGESEAIIARSIIEWREKVARLFNVNRNIVMHSKSVLLATK 254
>gi|359298919|ref|ZP_09184758.1| ribonuclease D [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305636|ref|ZP_10824695.1| ribonuclease D [Haemophilus sputorum HK 2154]
gi|400376749|gb|EJP29636.1| ribonuclease D [Haemophilus sputorum HK 2154]
Length = 370
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 87/204 (42%), Gaps = 18/204 (8%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGV 86
+ D KV+H D+ Q F M DT + L L + L+ H+ +
Sbjct: 71 LLADEQVIKVLHACSEDLEVFQHRFQQLPTPMIDTQIMAGFLGLGASIGFAKLVAHYLEI 130
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 146
+K DW RPL + L YA D YLL IY M+ + EN P
Sbjct: 131 ELDKGASRTDWLARPLSEVQLDYAAADVWYLLPIYQKMQEAM------QENRWMPAVR-- 182
Query: 147 KRSYDVCRQLYEKELLSEN---SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ C QL +K + N +YL I Q L QQLAV+ L +WR A+ D +
Sbjct: 183 ----EECEQLLQKRQKTVNPNKAYLDIS--QAWQLTPQQLAVLQVLAKWRLEEAQKRDLA 236
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
+V+ ++L EIAK P ++L
Sbjct: 237 LNFVVKEQSLFEIAKTQPKHTSEL 260
>gi|227503491|ref|ZP_03933540.1| ribonuclease D [Corynebacterium accolens ATCC 49725]
gi|227075994|gb|EEI13957.1| ribonuclease D [Corynebacterium accolens ATCC 49725]
Length = 406
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 89/197 (45%), Gaps = 16/197 (8%)
Query: 37 VMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
++H A D+ WL G++ +FDT A+R R +L ++ V K +
Sbjct: 90 IIHAAPSDLPSLGWL----GLFPGTLFDTELAARFAGFHRTNLGAIIAELFDVQLEKGHG 145
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 153
+ DW + L +EM YA D LL + ++ L+ K + V K + D
Sbjct: 146 DDDWSIPRLSEEMRAYAALDVELLLELATTLRDILAEQEKLDWMVEECAAIVAKHANDTA 205
Query: 154 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
Q +S+ I G+ N +Q A L RD I+R D + G VLPN+ L
Sbjct: 206 PQ--------PHSWRDIKGVSSLK-NGKQRAAAQSLWALRDDISRRTDTAPGRVLPNKVL 256
Query: 214 IEIAKQLPTTAAKLRRL 230
+EIA+ LP+T +L R+
Sbjct: 257 VEIARVLPSTQPQLTRI 273
>gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365]
gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365]
Length = 400
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 27/238 (11%)
Query: 23 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLH 81
P LR + DP V H A +D+ L F I+ N +DT A+ + + E+ L+
Sbjct: 73 PVLR-LIGDPAVVSVAHAAKQDLGILAARFDIFAENFWDTQIAAAFVGMAEQIGYGKLVD 131
Query: 82 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 141
GV +K Q W RPL LRYA +D YL ++ + +L + + + +
Sbjct: 132 ALLGVQLDKASQFTKWLERPLSPAQLRYAADDVRYLPRVWAHLSQRLDELGRRAWVGE-- 189
Query: 142 LTEVYKRSYDVCRQLYEKELLSENSY------LHIYGLQGAG-LNAQQLAVVAGLCEWRD 194
E LL+ ++ L + L+GAG L + L +A L WR
Sbjct: 190 ----------------ESALLARDAMPYGPAELAYHSLKGAGALRGKALGRLAALAAWRQ 233
Query: 195 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
A AD+ +VLP++ L+E++++ +R + RY ++S ++ +
Sbjct: 234 ERALADNLPLSWVLPDKALLELSRRGARGPGDVRNAPGVTGTIARRYADAIVSALQGA 291
>gi|297571370|ref|YP_003697144.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
gi|296931717|gb|ADH92525.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
Length = 398
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L R+ G+ N+FDT A +L +R SL+ ++ G KE+ +AD
Sbjct: 92 ILHAADQDLPCL-RELGLEPSNVFDTELAGLILGYDRVSLQSMIAEELGFVLAKEHSDAD 150
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPL E+ YA D L+ + + + KL KE+ + L+E C ++
Sbjct: 151 WSARPLGPELRAYAALDVDLLIELRESLTGKL----KEAGRYEWFLSE--------CEEV 198
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQ-LAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 215
+ L + ++ A Q+ LA++ L E R+ +A D + G VLPN L
Sbjct: 199 RRRPLPPAHPQPWRKAVKHAKFPDQRSLAMLKALWEAREKLAEDRDLAPGKVLPNNVLAN 258
Query: 216 IAKQLPTTAAKLRR--LLKSK 234
+A + P + + + + LL+S+
Sbjct: 259 LAARKPRSRSDVAQSSLLRSR 279
>gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
Length = 386
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 29/227 (12%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ + VVD L R+ + P L+E+F D KV H +D+ L + F +F
Sbjct: 48 LQMAYQGGQCVVDVLDERLDLSP-LQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIF 106
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTHYL 117
DT AS + + NS+ Y L+ F GV NK ++ DW RPL + +RYA +D YL
Sbjct: 107 DTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYL 166
Query: 118 LYIYDIM------KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 171
+Y+++ K +L+ +E EN + E + +YD LL +
Sbjct: 167 HELYEVLLGILTAKERLTWFLEEMEN----IAEAFVDNYD--------SLLEGMDFF--- 211
Query: 172 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 218
L + + + EWR+ +AR + + V+ +++++ K
Sbjct: 212 ----PELGESEAIIARSIIEWREKVARLFNVNRNIVMHSKSVLLATK 254
>gi|50954730|ref|YP_062018.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951212|gb|AAT88913.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 398
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A+R+L + R L ++ G++ KE+ AD
Sbjct: 79 VLHAATQDLTCL-REVGLDPVTIFDTELAARLLGMPRVGLGTVVEELLGIHLTKEHSAAD 137
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D L + D + L + K ++ RQ
Sbjct: 138 WSTRPLPGPWLEYAALDVELLPDLRDAVAGLLDAADKT----------------EIARQE 181
Query: 157 YEKELLSENSYLH---------IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 207
+E EL E + + I+ ++G + LA L RD +AR D + G +
Sbjct: 182 FEDELTRELTTVRSDPWRRLSGIHSIRG----VRNLATARELWLSRDALARQLDIAPGRL 237
Query: 208 LPN 210
+P+
Sbjct: 238 VPD 240
>gi|153009869|ref|YP_001371084.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
gi|404320174|ref|ZP_10968107.1| ribonuclease D [Ochrobactrum anthropi CTS-325]
gi|151561757|gb|ABS15255.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
Length = 385
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ +VD L + + P+ R + D T KV H A +DI + + +F
Sbjct: 42 IQMASPDHTALVDALAPGLDLAPFFR-LMADETIVKVFHAARQDIEIVFHLGDLIPSPVF 100
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
D+ A+ V + S + L+ G +K + DWR RPL D+ L YA D YL
Sbjct: 101 DSQVAAMVCGFGDAISYDQLVQKVTGKQIDKSSRFTDWRRRPLSDKQLDYALADVTYLRD 160
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
IY +K +L + ++ + +YD + ++++ + L
Sbjct: 161 IYLYLKEELEKEGRSEWVNEEMAVLTSRETYD---------MHPDDAWRRVKARVRKPL- 210
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 211 --ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|418472457|ref|ZP_13042195.1| ribonuclease, partial [Streptomyces coelicoflavus ZG0656]
gi|371546925|gb|EHN75347.1| ribonuclease, partial [Streptomyces coelicoflavus ZG0656]
Length = 298
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 74 VLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 132
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +
Sbjct: 133 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFHAIASA 183
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 184 PPPE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQTRDRIAQRRDVSPGKVLGDAAIVEA 241
Query: 217 AKQLPTTAAKLRRL 230
A LP A L L
Sbjct: 242 ALALPPNAHALAAL 255
>gi|396585245|ref|ZP_10485670.1| 3'-5' exonuclease [Actinomyces sp. ICM47]
gi|395546974|gb|EJG14494.1| 3'-5' exonuclease [Actinomyces sp. ICM47]
Length = 414
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 50 RDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRY 109
R G+ +FDT A+R++ LER L + G+ K++Q +DW VRPLP E LRY
Sbjct: 114 RQVGLRPSALFDTEIAARLVGLERFGLAAVAEQVLGLGLVKDHQASDWSVRPLPKEWLRY 173
Query: 110 AREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL- 168
A D L +Y + +L M + ++ +Q + L +
Sbjct: 174 AALDVELLTELYYRLSKRLDQMGR----------------WEWAQQEFAHALSVKPPTAK 217
Query: 169 --HIYGLQGAG--LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
L GAG + + L V+ L E R+ IAR D S G ++ N L+ A P
Sbjct: 218 PDRWRSLPGAGKIRSRRGLGVLKALWETRESIARRIDMSPGRLVRNAALVRAASNPP 274
>gi|337269427|ref|YP_004613482.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
gi|336029737|gb|AEH89388.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
Length = 383
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 28/228 (12%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 65
++D L + + P+ + + + KV H A +DI + ++L ++ FDT A
Sbjct: 52 LIDPLSSDIDLRPFFK-LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVA 105
Query: 66 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 124
+ V + S + L+ G +K + DWR RPL D+ L YA D +L+ +Y +
Sbjct: 106 AMVCGFGDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHL 165
Query: 125 KIKLSSMPKESENSDTPLTEVYKRSYDVC--RQLYEKELLSENSYLHIYGLQGAGLNAQQ 182
+L+ EN L E DV R+ Y+ E+++ L+ Q+
Sbjct: 166 NAELA-----RENRAHWLNE----EMDVLTSRETYDPH--PEDAWKR---LKMRLRKPQE 211
Query: 183 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
LA+V + WR+ AR D G VL + + E+A+Q P AA L +L
Sbjct: 212 LAIVQAVAAWREREARERDVPRGRVLKDDAIYEVAQQAPRDAAALAKL 259
>gi|120403469|ref|YP_953298.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1]
gi|119956287|gb|ABM13292.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1]
Length = 426
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 14/204 (6%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 86
EV D + V+H AD+D+ L + G+ +++DT A R+ ER +L ++ G+
Sbjct: 106 EVLSD--AEWVLHAADQDLPCLA-EIGMRPPSLYDTELAGRLANYERVNLAAMVQRLLGL 162
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 146
K + ADW RPLP + L YA D L+ + + L KE ++
Sbjct: 163 QLTKGHGAADWSKRPLPQDWLNYAALDVEVLVDLRHAISEVLQEQGKEGWAAE------- 215
Query: 147 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 206
++ R + E + + G+ + + LA V L RD IAR D + G
Sbjct: 216 --EFEYLRTV-EATPTRRDRWRRTSGIHKVR-DPRALAAVRELWTTRDQIARRRDIAPGR 271
Query: 207 VLPNRTLIEIAKQLPTTAAKLRRL 230
+LP+ ++ A P T KL L
Sbjct: 272 ILPDSAIVNAATANPDTIEKLTAL 295
>gi|417860412|ref|ZP_12505468.1| ribonuclease D [Agrobacterium tumefaciens F2]
gi|338823476|gb|EGP57444.1| ribonuclease D [Agrobacterium tumefaciens F2]
Length = 386
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P L E+ +P KV H A +DI + G+ +F
Sbjct: 40 VQMASPTLEVLVDPLAKGLDLTP-LFELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V +K + DW RPL ++ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L E E LTE D+ ++ ++++L L+
Sbjct: 159 VYLALKAQL-----EREGRSLWLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 207 PTELAILKFVAAWREREARSRNVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|332667981|ref|YP_004450769.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100]
gi|332336795|gb|AEE53896.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100]
Length = 395
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 20/232 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++TR F++D L+ + P+L E+ ++P KV H + D L FG N F
Sbjct: 45 IQVATRHGLFLIDPFPLK-NLDPFL-EMIENPNIVKVTHAGENDYRLLYASFGTIPKNTF 102
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L R L + L+ +N NK + ADW RP L+YA +D L
Sbjct: 103 DTQIAAGFLGY-RYPLAFKKLVETELKINMNKSFTVADWEARPFNQNQLKYAIQDIEPL- 160
Query: 119 YIYDIMKIKLSSM--PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
YD+ K++ + + K ++ + + SY YE + NS L
Sbjct: 161 --YDLWKMQEADLLRKKRLHWAEEEFKVLERESYYAKEPHYE----ALNSDLM------K 208
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
LN ++ + L EWR A + S VLP++ + +I + + + A LR
Sbjct: 209 SLNKRERLFLLRLFEWRRNTAEDKNYSKEMVLPSKFMSQIVRSMRSGRAGLR 260
>gi|284990407|ref|YP_003408961.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160]
gi|284063652|gb|ADB74590.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160]
Length = 418
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A+R+ L R L ++ G K + AD
Sbjct: 109 VLHAASQDLPSLA-EVGLVPARLFDTELAARLAGLPRVGLGAVVESLLGYRLEKGHSAAD 167
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+E L YA D L+ + D + L K +E + + R
Sbjct: 168 WSTRPLPEEWLVYAALDVEVLVDLRDALAAVLEEQGK-TEWARQEFAAILAAGPPAPRA- 225
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + G+ G + +QL ++ L + RD +AR D + G VLP+ ++
Sbjct: 226 --------DPWRRTSGVHGLR-SRRQLGMLRSLWQARDELARRRDIAPGRVLPDAAMVSA 276
Query: 217 AKQLPTTAAKLRRL 230
+ P T A L L
Sbjct: 277 VQADPRTEAALLEL 290
>gi|433775810|ref|YP_007306277.1| ribonuclease D [Mesorhizobium australicum WSM2073]
gi|433667825|gb|AGB46901.1| ribonuclease D [Mesorhizobium australicum WSM2073]
Length = 383
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 28/228 (12%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 65
++D L + + P+ R + + KV H A +DI + ++L ++ FDT A
Sbjct: 52 LIDPLSPDIDLAPFFR-LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVA 105
Query: 66 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 124
+ V + S + L+ G +K + DWR RPL D+ L YA D +L+ +Y +
Sbjct: 106 AMVCGFGDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHL 165
Query: 125 KIKLSSMPKESENSDTPLTEVYKRSYDVC--RQLYEKELLSENSYLHIYGLQGAGLNAQQ 182
+L+ EN L E DV R+ Y+ E+++ L+ Q+
Sbjct: 166 NAELA-----RENRAHWLNE----EMDVLTSRETYDPH--PEDAWKR---LKMRLRKPQE 211
Query: 183 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
LA+V + WR+ AR D G VL + + EIA+Q P A L +L
Sbjct: 212 LAIVQAVAAWREREARERDVPRGRVLKDDAIYEIAQQGPRDAPALAKL 259
>gi|332533384|ref|ZP_08409249.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
gi|332037093|gb|EGI73550.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
Length = 304
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 22/210 (10%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 84
E+ KDP+ KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 37 EILKDPSVLKVLHSPSEDIEVFQKYAGFVPSPLFDTQFALQLLG-EGNCMGFALMVKELQ 95
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
G+ +K +W RPL + L YA DT YLL ++++ ++++ + D + E
Sbjct: 96 GIEIDKSESRTNWLQRPLTKKQLDYAAADTFYLLPCFELIIERINA----AGFFDIVINE 151
Query: 145 ----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
KR++ +L K++ +N++ L +LAV+ L WR A
Sbjct: 152 SELIAKKRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRRNKAIKK 200
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + +VL + EIAK+ P++ LR++
Sbjct: 201 NLALNFVLKEHNMTEIAKRGPSSLNALRQI 230
>gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51]
gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51]
Length = 377
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 21/234 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPY--LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN 58
+QI F++D L +G + L E+ ++ KV+H D+ L R G
Sbjct: 46 IQIGDGQRAFLIDPLL----IGNWQPLAELLENSGVVKVLHACSEDLEVLLRLTGKLPQP 101
Query: 59 MFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 116
+FDT A+ L L S+ Y L+ G++ K +DW RPL D + YA ED +
Sbjct: 102 LFDTQLAAGYLNLG-FSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSDTQVSYAAEDAVH 160
Query: 117 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
L ++ +++ P+ S++ + E R+ E L + L
Sbjct: 161 LAELFTVLR------PRLSDDKYAWVLEDGAELVAALRREVEPATLYRDVKL------AW 208
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L QQLAV+ LC WR+ AR+ D VL +L IAK P+ + L ++
Sbjct: 209 KLAPQQLAVLRELCAWRERTARSRDVPRNRVLKEHSLWPIAKNQPSNLSALAKV 262
>gi|148653524|ref|YP_001280617.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1]
gi|148572608|gb|ABQ94667.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1]
Length = 431
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 31/217 (14%)
Query: 51 DFGIY--------LCNMFDTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRP 101
D GI+ L N+FDT A L + + + L V+ K +DW RP
Sbjct: 127 DLGIFYLLSESPALTNVFDTQIALSYLTGQLQMGYQQALSQELDVHVEKAESQSDWLARP 186
Query: 102 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 161
L E YA +D YLL +YDI++ +LS LT+ + + C QLY KEL
Sbjct: 187 LSHEQENYAIDDVRYLLNLYDILQQQLSKQ---------GLTD---KVVEDC-QLYAKEL 233
Query: 162 L------SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 215
+ +YL + +QLAV+ + WR+ +ARA ++ +VL + + +
Sbjct: 234 YESANIEDDATYL---AMADFRYTPEQLAVLQAVSSWREALARATNQPKTFVLKKQAVRD 290
Query: 216 IAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
+ ++PT+ +L + S + Y ++ +I +
Sbjct: 291 LVVEMPTSIKQLTQKTTMHRSIVRLYGDELIQVINQA 327
>gi|395786188|ref|ZP_10465915.1| ribonuclease D [Bartonella tamiae Th239]
gi|423716919|ref|ZP_17691109.1| ribonuclease D [Bartonella tamiae Th307]
gi|395422486|gb|EJF88682.1| ribonuclease D [Bartonella tamiae Th239]
gi|395428993|gb|EJF95068.1| ribonuclease D [Bartonella tamiae Th307]
Length = 386
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 47/261 (18%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QIS+ ++D L + + + + D KV H A +DI + + G+ +F
Sbjct: 42 IQISSDELSVLIDPLSENIDLSSFF-TLISDTQVVKVFHSARQDIEIIYKMAGLIPTPLF 100
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ + E S + +++ G +K + DW RPL + L YA D YL
Sbjct: 101 DTQIAAAICGYGETISYDQIVNRITGDTIDKTSRFTDWSARPLSENQLSYALADVTYLRQ 160
Query: 120 IYDIMKIKLS------------SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSY 167
+Y ++ +L S+ K + D P E +K+
Sbjct: 161 VYRVLNEELEKKGRSDWLNEEMSVLKTPKTYDLPEDEAWKK------------------- 201
Query: 168 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP---TTA 224
++G +++LAV+ + WR+ A+ + G VL + LIEIA Q P +
Sbjct: 202 -----VKGRLRKSRELAVLQKIAAWREREAKMRNIPRGRVLKDEALIEIATQQPKDEASL 256
Query: 225 AKLRRLLK------SKHSYIE 239
AKLR + K S HS +E
Sbjct: 257 AKLRTITKGWERSSSAHSLLE 277
>gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026]
gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026]
Length = 385
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 24/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM- 59
+Q+++ +VD L + + P+ R + D KV H A +DI + +L N+
Sbjct: 42 IQMASPDHTALVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLI 95
Query: 60 ----FDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDT 114
FDT A+ V + S + L+ + +K + DWR RPL D+ L YA D
Sbjct: 96 PSPVFDTQVAAMVCGFGDAISYDQLVQKVTSKHLDKSSRFTDWRRRPLSDKQLDYALADV 155
Query: 115 HYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 174
YL IY +K +L + ++ +++YD L ++++ +
Sbjct: 156 TYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARV 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
L +LA+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 207 RKPL---ELAIVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|159037106|ref|YP_001536359.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
gi|157915941|gb|ABV97368.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
Length = 451
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A+R+ ER L L H G + K + AD
Sbjct: 136 VLHAASQDLPCLA-ELGLRPRRLFDTELAARLAGFERVGLAALTEHLLGFSLEKHHSAAD 194
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ L YA D L+ + D ++ +L+ K ++ + R
Sbjct: 195 WSSRPLPESWLTYAALDVELLVELRDALEAELTRQGKAEWAAEE--------FAALVRNG 246
Query: 157 YEKELLSENSYLHIYGLQGA-GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 215
+ + G+ G AQ A V L RD IA D + G VLP+ ++
Sbjct: 247 ARPPRVRAEPWRRTSGIHRVRGARAQ--ARVRSLWYARDQIAARRDAAPGRVLPDSAIVA 304
Query: 216 IAK 218
A+
Sbjct: 305 AAE 307
>gi|38233981|ref|NP_939748.1| ribonuclease [Corynebacterium diphtheriae NCTC 13129]
gi|376293406|ref|YP_005165080.1| ribonuclease D [Corynebacterium diphtheriae HC02]
gi|38200243|emb|CAE49927.1| Putative ribonuclease [Corynebacterium diphtheriae]
gi|372110729|gb|AEX76789.1| ribonuclease D [Corynebacterium diphtheriae HC02]
Length = 407
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D L+ + + MK+ L + K E +K+ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHKQE---CAHL 196
Query: 157 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
L ++ S+ I G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INTSSHGLDTQRSWQDIKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 214 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 251
I +A++ P + A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|376243001|ref|YP_005133853.1| ribonuclease D [Corynebacterium diphtheriae CDCE 8392]
gi|372106243|gb|AEX72305.1| ribonuclease D [Corynebacterium diphtheriae CDCE 8392]
Length = 407
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D L+ + + MK+ L + K E +K+ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHKQE---CAHL 196
Query: 157 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
L ++ S+ + G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INTSSHGLDTQRSWQDMKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 214 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 251
I +A++ P T A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNTQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|116670217|ref|YP_831150.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
gi|116610326|gb|ABK03050.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
Length = 449
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAASQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 152
W RPLP+ LRYA D L + + + L K E E + + D
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLTELREELIELLQGDGKLEYAEQEFAAILAAGLAPPRVDP 238
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R+ S LH + +QLA V L RD +AR D + G ++P+
Sbjct: 239 WRK---------TSGLHQI------RDRRQLAAVRELWLERDSLARKRDVAPGRLIPDSA 283
Query: 213 LIEIAKQLPTTAAKL 227
L+ AK +P+T +L
Sbjct: 284 LVAAAKAMPSTVPQL 298
>gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H]
gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H]
Length = 396
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 19/241 (7%)
Query: 7 TEDFV-VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 65
TED V +DTL + + P L + P KV H A +D+ F ++FDT A
Sbjct: 57 TEDVVLIDTLAPGIDLAP-LGALLAKPDCTKVFHAARQDLEIFLHIFDRLPASVFDTQVA 115
Query: 66 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 124
+ V ++ + L+ G + +K ++ +DW RPL + YA D +L +YD +
Sbjct: 116 AMVAGFGDQVGYDSLVGAITGRSIDKAHRFSDWSARPLSKAQIAYAATDVTHLRTVYDAL 175
Query: 125 KIKLSSMPK--ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 182
+ +L+ + +++ LTE D R+L+EK L+ N +
Sbjct: 176 RKQLAEQDRLHWADSEQAILTEEKTFRPD-PRRLWEK-------------LKARTSNRRM 221
Query: 183 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 242
L ++ + WR+ A+ D V+ + +L+EIA P T L R+ + E M
Sbjct: 222 LGILREVTAWREQEAQNADIPRQRVIRDESLLEIAAVHPDTVEALSRIRGVTRGFAEGKM 281
Query: 243 G 243
G
Sbjct: 282 G 282
>gi|408788884|ref|ZP_11200598.1| ribonuclease D [Rhizobium lupini HPC(L)]
gi|408485322|gb|EKJ93662.1| ribonuclease D [Rhizobium lupini HPC(L)]
Length = 386
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P L E+ +P KV H A +DI + G+ +F
Sbjct: 40 VQMASPTLEVLVDPLAKGLDLTP-LFELMANPGVVKVFHAARQDIEIIYHLGGLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V +K + DW RPL ++ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L E E LTE D+ ++ ++++L L+
Sbjct: 159 VYLSLKAQL-----EREGRSLWLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 207 PTELAILKFIAAWREREARSRNVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|407715500|ref|YP_006836780.1| ribonuclease D [Cycloclasticus sp. P1]
gi|407255836|gb|AFT66277.1| Ribonuclease D [Cycloclasticus sp. P1]
Length = 383
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 25/227 (11%)
Query: 3 ISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA--DRDIVWLQRDFGIYLCNMF 60
I T D V + + P L ++ + KV H A D++I + R G L +F
Sbjct: 45 IQIATADIVAIIDPIACDIKPLL-DILYNQNILKVFHAARQDQEIFYDLR--GKPLAPVF 101
Query: 61 DTGQASRVL-KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ +L E+ L+ GV +K + DW RPL +E + YA +D YL
Sbjct: 102 DTQIAAPILGHPEQAGYARLVDDILGVQLSKAHSRTDWLRRPLSEEQITYAADDVIYLAK 161
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR-QLYEKELLSENSYLHIYG---LQG 175
+Y +++ +L K+ N P D+C+ LY E ++ I L+G
Sbjct: 162 LYPLLENQLKE--KDRLNWLAPAFA------DLCKPSLYSNP--PELAWKRIRAAKRLKG 211
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
L+A Q L EWR+ +A+ D G+++ + LIE+AK PT
Sbjct: 212 GALSALQ-----KLAEWREDLAQQKDIPRGWIIKDDILIEVAKLKPT 253
>gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
Length = 382
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 16/232 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++R E VVDTL + + P+ ++ + KV H A +DI + GI +F
Sbjct: 42 VQMASRDEAVVVDTLAPGIDLKPFF-DLMANENVLKVFHAARQDIEIVWHRAGIVPHPIF 100
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ VL +S+ Y L+ G +K ++ DW RPL DE L YA D +L
Sbjct: 101 DTQVAAMVLGYG-DSIAYDQLVERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLR 159
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
++ + L + S+ ++YD + E E L+
Sbjct: 160 DVFAALDADLKQRGRSDWVSEEMEVLTSPKTYD-----FHPESAWER-------LKTRVR 207
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
++LAV+ + WR+ A+ D VL + L +IA PT+ +L L
Sbjct: 208 KPKELAVLMEVAAWREQEAQTRDVPRSRVLKDDALGDIATHAPTSLERLANL 259
>gi|333892430|ref|YP_004466305.1| ribonuclease D [Alteromonas sp. SN2]
gi|332992448|gb|AEF02503.1| ribonuclease D [Alteromonas sp. SN2]
Length = 385
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 20/219 (9%)
Query: 36 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQ 93
KV+H D+ F +FD+ A+ +L L SL Y L+ C V+ +K
Sbjct: 77 KVLHSCSEDLETFLTAFNTVPTPVFDSQFAASILGLG-ASLGYAKLVELLCDVSLDKGES 135
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 153
DW RPL + L YA D YLL Y+ + K+ N L VY+
Sbjct: 136 RTDWIARPLREAQLSYAANDVLYLLPCYEHLVEKI--------NEAGKLEWVYQE----I 183
Query: 154 RQLYEK---ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
QL +K ++ E +Y+ I L+ +QL V+ L WR AR D + +V
Sbjct: 184 AQLADKKRSQMPEEFAYMQIKN--NWRLSKEQLTVLQALAAWRLATARKKDMALNFVFKE 241
Query: 211 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 249
L E A+ +P++ + L +L I RY ++++I
Sbjct: 242 IHLYEAARLMPSSKSGLSQLHGVNPQSIRRYGETIITLI 280
>gi|145634613|ref|ZP_01790322.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
gi|145268158|gb|EDK08153.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
Length = 362
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R + L ++ L L + V
Sbjct: 59 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFIGLGASAGLAKLAQQYLNV 118
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 146
+K +W RPL D L+YA D YLL +Y I++ +L+ P E SD +
Sbjct: 119 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALA 178
Query: 147 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 206
K +L E++ SE +YL I LN +L+ + L +WR +A D + Y
Sbjct: 179 K-----THKLQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLALSY 229
Query: 207 VLPNRTLIEIAKQLPTTAAKL 227
++ + L ++AK P +++
Sbjct: 230 IVKSEHLWKVAKNNPRNTSEM 250
>gi|21324671|dbj|BAB99294.1| Ribonuclease D [Corynebacterium glutamicum ATCC 13032]
Length = 421
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 34 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 90
++ ++H A D+ WL G+ +FDT A R+ + +L ++ ++ K
Sbjct: 105 QEWIIHAASTDLPSLAWLDLHPGL----LFDTELAGRLAGFDHVNLAAMVEQIFDLHLLK 160
Query: 91 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 150
+ + DW RPLP+ L YA D LL + D+M L + P E +
Sbjct: 161 GHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL------DQQGKLPWAE--QEFV 212
Query: 151 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+ Q SE S+ + GL QL V + RD A + D + G VL N
Sbjct: 213 HIVDQFATMTEPSETSWQDLKGLSTLK-RPDQLVVAREMWLERDSFAASRDLAPGKVLSN 271
Query: 211 RTLIEIAKQLPTTAAKL 227
+ ++E+A+ LP T A+L
Sbjct: 272 KVIVEVARVLPRTPAEL 288
>gi|358445415|ref|ZP_09156025.1| putative ribonuclease D [Corynebacterium casei UCMA 3821]
gi|356608861|emb|CCE54274.1| putative ribonuclease D [Corynebacterium casei UCMA 3821]
Length = 411
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 10/197 (5%)
Query: 34 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
++ ++H A D+ L G+Y +FDT A R+L + +L Y+ F G+ +K Y
Sbjct: 87 EEWIVHAAATDLTCLAW-LGLYPGKLFDTEVAGRLLGIPNPNLAYVTEEFLGIELDKGYG 145
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 153
DW PL L YA D L+ + + M L E E+ E + +
Sbjct: 146 ATDWSRFPLSKAQLAYAALDVETLIDLAEEMAYDL-----EQEDKTDWAREEFAAIANHF 200
Query: 154 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
+ E + S++ G++G + LAV + E R+ A D + G ++ N +L
Sbjct: 201 GSITEP---TPRSWIDSRGIRGI-YEPEGLAVAKAVWEEREQQAYDADIAPGQIISNSSL 256
Query: 214 IEIAKQLPTTAAKLRRL 230
++IA+ +P + +LRR+
Sbjct: 257 VDIARHIPRSINQLRRI 273
>gi|256372386|ref|YP_003110210.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
gi|256008970|gb|ACU54537.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
Length = 396
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 18/229 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQ-VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+Q++ +++D L++ + + + EV + V H AD+D+ ++R G +
Sbjct: 62 VQVAIDRRVWLIDPLRVDLSPIAAWFDEV------ELVFHAADQDLEIIERAVGARPRRI 115
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A L SL LL + GV+ +K + +DW RPL L YA D YL
Sbjct: 116 FDTQVAGGFLGAGHASLGALLDRYLGVSISKAERTSDWLRRPLEPGQLAYAANDVRYLAA 175
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+ D + +L + +E V +R D+ E EL ++ I +G
Sbjct: 176 LADRLLEELHARGREDWARSEMARLVERRRRDI-----EPEL----AWTRIRECRGLDPT 226
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
+++A A + WR+ A+ DD VL + + +AK P++ +LR
Sbjct: 227 GRRIA--ASVAAWRERTAQRDDVPVRTVLSDLAVASVAKARPSSLTELR 273
>gi|19553105|ref|NP_601107.1| ribonuclease D [Corynebacterium glutamicum ATCC 13032]
gi|62390740|ref|YP_226142.1| ribonuclease D protein [Corynebacterium glutamicum ATCC 13032]
gi|41326078|emb|CAF20241.1| PROBABLE RIBONUCLEASE D PROTEIN [Corynebacterium glutamicum ATCC
13032]
gi|385144007|emb|CCH25046.1| ribonuclease D [Corynebacterium glutamicum K051]
Length = 403
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 34 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 90
++ ++H A D+ WL G+ +FDT A R+ + +L ++ ++ K
Sbjct: 87 QEWIIHAASTDLPSLAWLDLHPGL----LFDTELAGRLAGFDHVNLAAMVEQIFDLHLLK 142
Query: 91 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 150
+ + DW RPLP+ L YA D LL + D+M L + P E +
Sbjct: 143 GHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL------DQQGKLPWAE--QEFV 194
Query: 151 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+ Q SE S+ + GL QL V + RD A + D + G VL N
Sbjct: 195 HIVDQFATMTEPSETSWQDLKGLSTLK-RPDQLVVAREMWLERDSFAASRDLAPGKVLSN 253
Query: 211 RTLIEIAKQLPTTAAKL 227
+ ++E+A+ LP T A+L
Sbjct: 254 KVIVEVARVLPRTPAEL 270
>gi|399043184|ref|ZP_10737609.1| ribonuclease D [Rhizobium sp. CF122]
gi|398058431|gb|EJL50329.1| ribonuclease D [Rhizobium sp. CF122]
Length = 381
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P+ E+ +P KV H A +DI + G+ +F
Sbjct: 40 IQMASPTTEVLVDPLAKGLDLKPFF-ELMANPAVLKVFHAARQDIEIIYNRGGLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L++ GV +K + DW RPL ++ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSVSYDQLVNRTKGVQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L E E + L E D+ ++ ++++ L+
Sbjct: 159 VYLYLKAEL-----EREGRSSWLRE----EMDILEARETYDMHPDDAWQR---LKMRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
Q+LA++ + WR+ AR+ + VL + + E+A+Q P A L RL
Sbjct: 207 PQELAILKYVAAWREREARSRNVPRSRVLKDDAIYEVAQQQPKDAEALGRL 257
>gi|317125038|ref|YP_004099150.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043]
gi|315589126|gb|ADU48423.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043]
Length = 418
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 34/185 (18%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+V L + G+ +FDT R+ L R L ++ H+ G+ KE+ D
Sbjct: 103 ILHAATHDLVCLA-EVGLQPRVLFDTELGGRLAGLPRVGLGAMVEHYLGLQLAKEHSAVD 161
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD-----------TPLTEV 145
W +RPLP+ LRYA D L+ + + L K ++ P +
Sbjct: 162 WSIRPLPEPWLRYAALDVEVLVDLRHAVHADLERQGKAGWAAEEFQSLLQFTGPEPRVDP 221
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++R+ + R I +G A+V L WRD +AR D S G
Sbjct: 222 WRRTSGIHR---------------IRARRGT-------AIVRELWVWRDELARQRDVSPG 259
Query: 206 YVLPN 210
++P+
Sbjct: 260 RIVPD 264
>gi|424910030|ref|ZP_18333407.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392846061|gb|EJA98583.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 386
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P L E+ +P KV H A +DI + G+ +F
Sbjct: 40 VQMASPTLEVLVDPLAKGLDLTP-LFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V +K + DW RPL ++ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L E E LTE D+ ++ ++++L L+
Sbjct: 159 VYLSLKAQL-----EREGRSLWLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 207 PTELAILKFVAAWREREARSRNVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|376248685|ref|YP_005140629.1| ribonuclease D [Corynebacterium diphtheriae HC04]
gi|376251484|ref|YP_005138365.1| ribonuclease D [Corynebacterium diphtheriae HC03]
gi|376257299|ref|YP_005145190.1| ribonuclease D [Corynebacterium diphtheriae VA01]
gi|372112988|gb|AEX79047.1| ribonuclease D [Corynebacterium diphtheriae HC03]
gi|372115253|gb|AEX81311.1| ribonuclease D [Corynebacterium diphtheriae HC04]
gi|372119816|gb|AEX83550.1| ribonuclease D [Corynebacterium diphtheriae VA01]
Length = 407
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 20/221 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D L+ + + MK+ L + K E +K+ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHKQE---CAHL 196
Query: 157 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
L +++S+ + G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INTSSHGLDTQHSWQDMKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 214 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 251
I +A++ P + A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|418244284|ref|ZP_12870707.1| ribonuclease D [Corynebacterium glutamicum ATCC 14067]
gi|354511690|gb|EHE84596.1| ribonuclease D [Corynebacterium glutamicum ATCC 14067]
Length = 403
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 20/214 (9%)
Query: 20 QVGPYLREVFKDPT---KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLER 73
QV P L + K P ++ ++H A D+ WL G+ +FDT A R+ +
Sbjct: 71 QVRPELTQALK-PVLNGQEWIIHAASTDLPSLAWLDLHPGL----LFDTELAGRLAGFDH 125
Query: 74 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 133
+L ++ ++ K + + DW RPLP+ L YA D LL + D+M L
Sbjct: 126 VNLAAMVEQIFDLHLLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL----- 180
Query: 134 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 193
+ P E + + Q +E S+ + GL QL V + R
Sbjct: 181 -DQQGKLPWAE--QEFVHIVDQFATMTEPAETSWQDLKGLSTLK-RPDQLVVAREMWLER 236
Query: 194 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
D A + D + G VL N+ ++E+A+ LP T A+L
Sbjct: 237 DSFAASRDLAPGKVLSNKVIVEVARVLPRTPAEL 270
>gi|239991576|ref|ZP_04712240.1| putative ribonuclease D [Streptomyces roseosporus NRRL 11379]
Length = 384
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L RD G+ ++FDT A R+ R L ++ + G K + D
Sbjct: 74 ILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAGFPRVGLGAMVENVLGYALEKGHSAVD 132
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 133 WSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGK---------LEWAREEFDAIAA- 182
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
++ + G+ +Q+AVV L RD +A+ D S G VL + ++E
Sbjct: 183 APPAPPRKDPWRRTSGMHKV-RRRRQMAVVRELWTTRDQVAQRRDVSPGKVLGDAAIVEA 241
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
A LP L L H R +
Sbjct: 242 ALALPVDVQALTALPGFGHRMGRRQL 267
>gi|424890947|ref|ZP_18314546.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393173165|gb|EJC73210.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 381
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P+ E+ DP KV H A +DI + + +F
Sbjct: 40 IQMASPTTEVLVDPLAKGIDLAPFF-ELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V+ +K + DW RPL D+ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSVSYDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L + E + L+E D+ ++ ++++ L+
Sbjct: 159 VYLSLKAEL-----DREGRTSWLSE----EMDILEARETYDMHPDDAWQR---LKMRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
Q+LA++ + WR+ ARA + VL + + EIA+Q P L RL
Sbjct: 207 PQELAILKYVAAWREREARARNVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|83645396|ref|YP_433831.1| ribonuclease D [Hahella chejuensis KCTC 2396]
gi|83633439|gb|ABC29406.1| ribonuclease D [Hahella chejuensis KCTC 2396]
Length = 398
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 119/271 (43%), Gaps = 25/271 (9%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYL-CNM 59
+Q+ R ++VD LK+ G + +F+ KV+H D+ L G+ C +
Sbjct: 58 LQLYDRQCVYLVDMLKITDWSG--VSRLFESRDILKVVHACSEDLE-LFNCVGLSQPCGL 114
Query: 60 FDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ +L E N L+ L+ G+ K +DW RPL D+ ++YA+ED L
Sbjct: 115 IDTQVANALLDGELNEGLQSLVRQNLGIELEKHATRSDWTQRPLTDKQIQYAQEDVVVLW 174
Query: 119 YIYDIM--KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
+Y + ++LS + + + D+ R YL + G
Sbjct: 175 PLYQKLAEALRLSGKYEIALEEGEAMRLAAAGVQDMGR-----------YYLKLRGGWRL 223
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 236
AQQL +A L WR+ AR D + P+ LI IA++ P T +L + + +
Sbjct: 224 RKGAQQL--LAKLAAWREQEARGRDIPRKKICPDDELIAIAQRRPRTLGQLTEITSIQGA 281
Query: 237 YIERYMGPVLSIIKNSMQNAAN-----FEVI 262
+ RY ++ +++ M+ + FE+I
Sbjct: 282 GLRRYGAELVGMVREHMKADGDEPETGFEMI 312
>gi|411003023|ref|ZP_11379352.1| ribonuclease D [Streptomyces globisporus C-1027]
Length = 384
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L RD G+ ++FDT A R+ R L ++ + G K + D
Sbjct: 74 ILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAGFPRVGLGAMVENVLGYALEKGHSAVD 132
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 133 WSTRPLPEPWLRYAALDVELLIDLRDALEEELERQGK---------LEWAREEFDAIAA- 182
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
++ + G+ +Q+AVV L RD +A+ D S G VL + ++E
Sbjct: 183 APPAPPRKDPWRRTSGMHKV-RRRRQMAVVRELWTTRDQVAQRRDVSPGKVLGDAAIVEA 241
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
A LP L L H R +
Sbjct: 242 ALALPADVQALTALPGFGHRMGRRQL 267
>gi|325963026|ref|YP_004240932.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3]
gi|323469113|gb|ADX72798.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3]
Length = 444
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAASQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L + + + L + K E ++ + R
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLTELREELIELLQADGK-LEYAEQEFAAILAAGLPPAR-- 235
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + S LH + +QLA V L RD +A+ D + G ++P+ L+
Sbjct: 236 --VDPWRKTSGLHQIR------DRRQLAAVRELWLERDSLAQKRDVAPGRLIPDSALVAA 287
Query: 217 AKQLPTTAAKL 227
AK +P+T +L
Sbjct: 288 AKAMPSTVPQL 298
>gi|453363937|dbj|GAC80252.1| ribonuclease D [Gordonia malaquae NBRC 108250]
Length = 404
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 15/226 (6%)
Query: 5 TRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 64
T + F++D + + P + +V P + ++H AD+D+ L R+ G ++FDT
Sbjct: 70 TGSGSFLLDPIDHPDALTPVI-DVLTGP--QWILHAADQDLPCL-RELGFVCESVFDTEL 125
Query: 65 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 124
A R+L + + +L ++ F + K + ADW RPLPD+ L YA D L+ + D +
Sbjct: 126 AGRLLNVPKVNLAAMVAGFLHLGLAKGHGAADWSQRPLPDDWLNYAALDVEVLVELRDAV 185
Query: 125 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 184
L +E+ + V R + + + N+ ++ A
Sbjct: 186 SAALREAGRETWAAQE-FAAVLARPAPEPKPDRWRRTSNLNTL----------KTTREYA 234
Query: 185 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
VV L R+ +AR D + VLP+ ++ AK P A+L L
Sbjct: 235 VVRELWTEREEVARRRDVAPSRVLPDAAIVNAAKSAPRNTAELTSL 280
>gi|145636341|ref|ZP_01792010.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
gi|145270506|gb|EDK10440.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
Length = 382
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P KV+H D++ ++F M DT +R L L ++ L L + V
Sbjct: 77 LLANPKVLKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|424894461|ref|ZP_18318035.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393178688|gb|EJC78727.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 381
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P+ E+ DP KV H A +DI + + +F
Sbjct: 40 IQMASPTTEVLVDPLAKGIDLAPFF-ELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V+ +K + DW RPL D+ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSVSYDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L + E + L+E D+ ++ ++++ L+
Sbjct: 159 VYLSLKAEL-----DREGRTSWLSE----EMDILEARETYDMHPDDAWQR---LKMRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
Q+LA++ + WR+ ARA + VL + + EIA+Q P L RL
Sbjct: 207 PQELAILKYVAAWREREARARNVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|209548705|ref|YP_002280622.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209534461|gb|ACI54396.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 381
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P+ E+ DP KV H A +DI + + +F
Sbjct: 40 IQMASPTTEVLVDPLAKGIDLAPFF-ELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V+ +K + DW RPL D+ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSVSYDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L + E + L+E D+ +L ++++ L+
Sbjct: 159 VYLSLKAEL-----DREGRTSWLSE----EMDILEARETYDLHPDDAWQR---LKMRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
Q+LA++ + WR+ AR+ + VL + + EIA+Q P L RL
Sbjct: 207 PQELAILKFVAAWREREARSRNVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|145632638|ref|ZP_01788372.1| ribonuclease D [Haemophilus influenzae 3655]
gi|386265214|ref|YP_005828706.1| Ribonuclease D [Haemophilus influenzae R2846]
gi|144986833|gb|EDJ93385.1| ribonuclease D [Haemophilus influenzae 3655]
gi|309972450|gb|ADO95651.1| Ribonuclease D [Haemophilus influenzae R2846]
Length = 380
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R + L ++ L L + +
Sbjct: 77 LLANPKVLKILHSCSEDLLVFLQEFDQLPHPMIDTQIMARFIGLGASAGLAKLAQQYLNI 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L+
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALS 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN+ +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNSLELSRLRILSQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|319775680|ref|YP_004138168.1| ribonuclease D [Haemophilus influenzae F3047]
gi|317450271|emb|CBY86487.1| ribonuclease D [Haemophilus influenzae F3047]
Length = 380
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P KV+H D++ ++F M DT +R L L ++ L L + +
Sbjct: 77 LLSNPKVLKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|145640347|ref|ZP_01795931.1| ribonuclease D [Haemophilus influenzae R3021]
gi|145274933|gb|EDK14795.1| ribonuclease D [Haemophilus influenzae 22.4-21]
Length = 380
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R + L ++ L L + V
Sbjct: 77 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFIGLGASAGLAKLAQQYLNV 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 146
+K +W RPL D L+YA D YLL +Y I++ +L+ P E SD +
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALA 196
Query: 147 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 206
K +L E++ SE +YL I LN +L+ + L +WR +A D + Y
Sbjct: 197 K-----THKLQERD--SEKAYLDIPN--AWKLNPLELSRLRILAKWRQNVAIERDLALSY 247
Query: 207 VLPNRTLIEIAKQLPTTAAKL 227
++ + L ++AK P +++
Sbjct: 248 IVKSDNLWKVAKNNPRNTSEM 268
>gi|417842935|ref|ZP_12489013.1| Ribonuclease D [Haemophilus haemolyticus M21127]
gi|341950811|gb|EGT77396.1| Ribonuclease D [Haemophilus haemolyticus M21127]
Length = 399
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
E+ +P K++H D++ ++F M DT +R L L ++ L L +
Sbjct: 95 ELLVNPNVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLN 154
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE---SENSDTPL 142
V +K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 155 VEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWERAVRDDCELAL 214
Query: 143 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 202
++ +K L E++ SE +YL I LN +L+ + L +WR + D
Sbjct: 215 SKTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVGIERDL 262
Query: 203 STGYVLPNRTLIEIAKQLPTTAAKL 227
+ Y++ + L ++AK P +++
Sbjct: 263 ALSYIVKSDNLWKVAKNNPRNTSEM 287
>gi|444306267|ref|ZP_21142036.1| ribonuclease D [Arthrobacter sp. SJCon]
gi|443481414|gb|ELT44340.1| ribonuclease D [Arthrobacter sp. SJCon]
Length = 444
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L + G++ +FDT A+R+ L R L ++ G + KE+ AD
Sbjct: 120 ILHAATQDLPCLL-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFSLAKEHSAAD 178
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 152
W RPLP+ LRYA D L + + + L + K E E + V D
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLSELREELVELLEADGKLGYAEQEFAAILAAGVAPPRVDP 238
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R+ S LH + +QLA V L RD +A+ D + G ++P+
Sbjct: 239 WRK---------TSGLHQI------RDRRQLAAVRELWLERDSLAQKRDVAPGRLIPDSA 283
Query: 213 LIEIAKQLPTTAAKL 227
L+ AK +P T +L
Sbjct: 284 LVAAAKAMPATVPQL 298
>gi|293192610|ref|ZP_06609564.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
gi|292820117|gb|EFF79114.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
Length = 414
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 3 ISTRTED---FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+ R ED F++DT L P L + ++H +D+ L R G+ +
Sbjct: 70 VQIRREDVGTFLIDTHAL-----PDLSVLQPGVEDVWLLHDCLQDLPNL-RQVGLRPSAL 123
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+R++ LER L ++ G+ K++Q +DW VRPLP E LRYA D L
Sbjct: 124 FDTEIAARLIGLERFGLAAVVEQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTE 183
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGL 173
+Y + +L M + ++ +Q + L + + I G
Sbjct: 184 LYYRLSKRLDEMGR----------------WEWAQQEFAYALSVTPPGPKPDRWRSIPG- 226
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
G + + LAV+ L E R+ IA+ D S G ++ N L+ A P
Sbjct: 227 AGKIRSRRGLAVLKALWETRESIAQRIDLSPGRLVRNAALVRAASNPP 274
>gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20]
gi|1173094|sp|P44442.1|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D
gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20]
Length = 399
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L ++ L L + V
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 155
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 215
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 263
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW]
gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW]
Length = 399
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L ++ L L + V
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 155
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 215
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 263
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|148825327|ref|YP_001290080.1| ribonuclease D [Haemophilus influenzae PittEE]
gi|148715487|gb|ABQ97697.1| translation-associated GTPase [Haemophilus influenzae PittEE]
Length = 380
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R + L ++ L L + +
Sbjct: 77 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFIGLGASAGLAKLAQQYLNI 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE---SENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E S++ + L+
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALS 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAKWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSDNLWKVAKNNPRNISEM 268
>gi|94500848|ref|ZP_01307374.1| ribonuclease D [Bermanella marisrubri]
gi|94426967|gb|EAT11949.1| ribonuclease D [Oceanobacter sp. RED65]
Length = 382
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 1 MQISTRTEDFVVDTLKL--------RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDF 52
+QI+ +E ++VD +++ R +V L EV + KV+H D +
Sbjct: 42 IQINDGSETYLVDPVRINRAHRGEPREEVWGPLIEVLSNQNVVKVLHSPSEDFDAFYSNL 101
Query: 53 GIYLCNMFDTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAR 111
G+ + DT A+ + ++ + L+ ++ K +DW RPL DE + YA
Sbjct: 102 GVVPSPIIDTQWAAAMASIDGIMGYQKLVKQLLDIDLEKGATRSDWLQRPLTDEQIHYAA 161
Query: 112 EDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 171
+D +LL I ++ +L + + + + C ++ E L+ + I
Sbjct: 162 DDVEHLLEITKRLETQLVTQGR------------WTWLLEDCERMVEDWLIGQEQGYGIE 209
Query: 172 GLQGAG-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
++ A L +QL + L WR+ R ++ G++L + L+++A +LPT+ +L
Sbjct: 210 RIKKAWMLKPKQLFTLEKLLAWRERRCRTVNKPRGHILNDSLLVDLAMRLPTSTKQL 266
>gi|408375119|ref|ZP_11172795.1| ribonuclease D [Alcanivorax hongdengensis A-11-3]
gi|407765000|gb|EKF73461.1| ribonuclease D [Alcanivorax hongdengensis A-11-3]
Length = 357
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 16/192 (8%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCG 85
+F D T VMH D+ + G Y + DT Q + L E L Y ++ G
Sbjct: 68 LFADHTL--VMHACSEDLEAIAAFSGAYPAAIEDT-QIAAALSGEDMQLGYQKIVQMLLG 124
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
V K +W RPL DE L YA +D YL + I++ +L ++ + E
Sbjct: 125 VELPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVTAILRERLDTLGRRHW-----WQEE 179
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
+R D R + L E ++ + G A L Q LAV+A L WRD +AR D
Sbjct: 180 CQRLLDQAR----RPSLPEKAWRQVKG--AAYLQGQSLAVLAELAAWRDAMARQRDLPKS 233
Query: 206 YVLPNRTLIEIA 217
+V+ + L+E+A
Sbjct: 234 FVVKDAQLLELA 245
>gi|284046840|ref|YP_003397180.1| ribonuclease D [Conexibacter woesei DSM 14684]
gi|283951061|gb|ADB53805.1| Ribonuclease D [Conexibacter woesei DSM 14684]
Length = 396
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 17/219 (7%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHF 83
L V DP + V+H A +D+ ++R + + +FDT A+ + LL
Sbjct: 76 LAAVLADPEIEIVLHAARQDVAIMRRAWRTDVREVFDTQVAAGFAGYGAQTGYGNLLGAA 135
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 143
G K W RPL +E L YA ED +LL + D + KLS+ +
Sbjct: 136 LGQRVGKTASYTRWDARPLTEEQLSYAAEDVLHLLQLSDALHDKLSAHGR---------- 185
Query: 144 EVYKRSYDVCRQLYEK--ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 201
+ + + CR++ E E E +Y + + L+ + AV + WR+ A+ +D
Sbjct: 186 --LQWAQEECRRMDEATDERDPETAYERLP--RSGQLDPRARAVAREVAAWRERTAQQED 241
Query: 202 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240
+ G +LP+ L+EIAK+ P++ +L ++ ++ R
Sbjct: 242 KPVGTILPDPALVEIAKRKPSSPRELEQIRGLHGGHLRR 280
>gi|145628753|ref|ZP_01784553.1| ribonuclease D [Haemophilus influenzae 22.1-21]
gi|144979223|gb|EDJ88909.1| ribonuclease D [Haemophilus influenzae 22.1-21]
Length = 399
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L ++ L L + V
Sbjct: 96 LLSNPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 155
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 215
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 263
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|290956585|ref|YP_003487767.1| exonuclease [Streptomyces scabiei 87.22]
gi|260646111|emb|CBG69204.1| putative exonuclease [Streptomyces scabiei 87.22]
Length = 397
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ + +FDT A R+ R L ++ G K + D
Sbjct: 84 VLHAATQDLPCL-REIDMVPTRIFDTELAGRLAGFPRVGLGAMVEGVLGYVLEKGHSAVD 142
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 143 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 193
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +Q+AVV + E RD IA+ D S G VL + ++E
Sbjct: 194 PPAE-PRKDPWRRTSGMHKV-RRRRQMAVVREMWEARDRIAQRRDVSPGKVLSDAAIVEA 251
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
+ LP A L L H R +
Sbjct: 252 SLALPVNATALAALNGFGHRMGRRQL 277
>gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476]
gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
Length = 384
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 111/247 (44%), Gaps = 14/247 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ ++D + + + P+ ++ D KV H A +DI + G+ +F
Sbjct: 43 IQLASPDVTVLIDPIAPDIDLQPFF-DLMIDKKIVKVFHSARQDIETIYYLGGVIPSPLF 101
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A + + S + ++ H G + +K + DW RPL ++ L YA D YL
Sbjct: 102 DTQIAGSICGFGDSISYDQIVQHCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRD 161
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y ++K +L + D + ++YD + E E + G
Sbjct: 162 VYLLLKKRLEKNQRTHWMDDEVTILLNPKTYD----MPEDEAWKKVK--------GKVKK 209
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
++LAV+ + WR+ AR + +++ + LIEIA Q P + L+RL ++ +
Sbjct: 210 PRELAVLQKIAAWREREARKYNMPRRHLMKDECLIEIAIQQPKDESALKRLRSLNKNWDK 269
Query: 240 RYMGPVL 246
R + P L
Sbjct: 270 RSIAPSL 276
>gi|414071398|ref|ZP_11407368.1| ribonuclease D [Pseudoalteromonas sp. Bsw20308]
gi|410806239|gb|EKS12235.1| ribonuclease D [Pseudoalteromonas sp. Bsw20308]
Length = 376
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 18/208 (8%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 84
++ KDPT KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 68 QILKDPTVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLG-EGNCMGFALMVKELL 126
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM--KIKLSSMPKESENSDTPL 142
G+ +K +W RPL + L YA DT +LL + ++ +IK + + N +
Sbjct: 127 GIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFKLIIERIKAADLFDIVINESELI 186
Query: 143 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 202
KR++ +L K++ +N++ L +LAV+ L WR A +
Sbjct: 187 AN--KRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRRNKAIRKNL 233
Query: 203 STGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ +VL + EIAK+ P++ LR++
Sbjct: 234 ALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|375293272|ref|YP_005127811.1| ribonuclease D [Corynebacterium diphtheriae INCA 402]
gi|376254487|ref|YP_005142946.1| ribonuclease D [Corynebacterium diphtheriae PW8]
gi|376284905|ref|YP_005158115.1| ribonuclease D [Corynebacterium diphtheriae 31A]
gi|376287914|ref|YP_005160480.1| ribonuclease D [Corynebacterium diphtheriae BH8]
gi|371578420|gb|AEX42088.1| ribonuclease D [Corynebacterium diphtheriae 31A]
gi|371582943|gb|AEX46609.1| ribonuclease D [Corynebacterium diphtheriae INCA 402]
gi|371585248|gb|AEX48913.1| ribonuclease D [Corynebacterium diphtheriae BH8]
gi|372117571|gb|AEX70041.1| ribonuclease D [Corynebacterium diphtheriae PW8]
Length = 407
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D L+ + + MK+ L + K E +K+ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHKQE---CAHL 196
Query: 157 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
L ++ S+ + G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INTSSHGLDTQRSWQDMKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 214 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 251
I +A++ P + A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|392545413|ref|ZP_10292550.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
rubra ATCC 29570]
Length = 377
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 22/231 (9%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 82
L + +D KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 66 LWHLLRDEQIVKVLHSPSEDIEVFQKFAGFVPAPLFDTQFALQLLG-EGNCVGFANMVKM 124
Query: 83 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 142
V +K DW RPL L YA D YLL Y+ + K++ E SD +
Sbjct: 125 MLDVELDKSMSRTDWLKRPLQASQLEYAAADVFYLLPCYESLSKKIA----EKGLSDIVI 180
Query: 143 TE----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 198
+E KR++ + ++YL++ L + LAV+ L WR A
Sbjct: 181 SESQLIAQKRAFR-----------TPDAYLYLSVKNVWQLKPRDLAVLRELASWRQSKAE 229
Query: 199 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 249
+ + +VL + ++EIAK+ P++ LR + + + R +L+ I
Sbjct: 230 KKNLALNFVLKEQNMVEIAKRRPSSLNSLRNVPGVEQMEVNRSGKEILACI 280
>gi|359427082|ref|ZP_09218157.1| ribonuclease D [Gordonia amarae NBRC 15530]
gi|358237695|dbj|GAB07739.1| ribonuclease D [Gordonia amarae NBRC 15530]
Length = 409
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L R+ G +FDT A R+L + +L ++ F G+ +K + AD
Sbjct: 92 VLHAADQDLPCL-REAGFTCTALFDTELAGRLLGRPKVNLATMVEEFLGLGLSKGHGAAD 150
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP + L YA D LL + D L+ K+ + V R R
Sbjct: 151 WSRRPLPHDWLVYAALDVEVLLELRDATAAALTDAGKDDWAREE-FAAVLARPAPAARV- 208
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + G+ +A+ LA V L R+ +A+ D + G +LP+ ++
Sbjct: 209 --------DRWRRTAGIHTVK-SARGLAAVRELWLTREEVAQRRDIAPGRILPDSAIVTA 259
Query: 217 AKQLPTTAAKLRRL 230
A P T L RL
Sbjct: 260 ASADPATVKDLTRL 273
>gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
25986]
gi|133776892|gb|EBA40712.1| ribonuclease D [Collinsella aerofaciens ATCC 25986]
Length = 377
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 20/232 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+T E VD L + + P L E+ D + KV H +D+ + G+ +F
Sbjct: 41 VQIATPAESVAVDPLVID-DLSP-LAELMADESVTKVFHACSQDMEVMLHTVGVLPRPIF 98
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L ER + Y L+ FCGV+ K DW RPL D+ + YA +D YL+
Sbjct: 99 DTQVAAAFLG-ERQQISYGALVQTFCGVSLPKTESLTDWSRRPLTDKQIEYAIDDVKYLI 157
Query: 119 YIYDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
Y M +L + + D PL + + Y R +++ NS
Sbjct: 158 VAYTEMMSRLRELGRVDWVLDELRPLAD--ESHYRADRHEAFRKVKRINS---------- 205
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
+ QL + L WR+ A + +V+ + TL+ + K+ P + R
Sbjct: 206 -CSRHQLGIARELAAWREDRAERRNIPRKWVMSDDTLLALVKRNPVRVEEFR 256
>gi|409040136|gb|EKM49624.1| hypothetical protein PHACADRAFT_214164 [Phanerochaete carnosa
HHB-10118-sp]
Length = 431
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 30/187 (16%)
Query: 106 MLRYAREDTHYLLYIYDIMKIKL-------------SSMPKESENS-----DTPLTEVYK 147
ML YAR DTH+LL+IYD ++ L +S P S +S + EV
Sbjct: 1 MLNYARSDTHFLLFIYDHLRNALLDRAQSRAQSPSTASEPAPSTSSAVNPSHALVREVLS 60
Query: 148 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE------------WRDV 195
RS + ++ E+E+ G + A++AG E WRD
Sbjct: 61 RSEETALRVLEREVYDAEGGSGPAGWDTLARKWNKGALMAGERETVRRRIYKAVHAWRDR 120
Query: 196 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 255
AR +DEST YVLPN L +A+Q P A L L + + R + I+ +
Sbjct: 121 AAREEDESTRYVLPNHYLFVLAEQPPADIAGLLSLFQHVPPVVRRRAKELFEAIRQAAAV 180
Query: 256 AANFEVI 262
++ V+
Sbjct: 181 SSEESVV 187
>gi|386852024|ref|YP_006270037.1| ribonuclease D [Actinoplanes sp. SE50/110]
gi|359839528|gb|AEV87969.1| ribonuclease D [Actinoplanes sp. SE50/110]
Length = 411
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A+R+ ER L L H G + K + AD
Sbjct: 98 VLHAASQDLPCLA-ELGMKPRRLFDTELAARLAGFERVGLAALTEHLLGYSLEKHHSAAD 156
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCR 154
W RPLP+ L YA D L + D++ +L K ++ L R V
Sbjct: 157 WSTRPLPESWLTYAALDVELLTDLRDLLATELDKQGKAGWAAEEFASLVASADRPPRVRP 216
Query: 155 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 214
+ + S +H + G AQ + V L RD IA D + G VLP+ ++
Sbjct: 217 DPWRR-----TSGIH----RVRGARAQ--SRVRALWYARDAIAARKDSAPGRVLPDSAIV 265
Query: 215 EIAKQLP 221
A+ P
Sbjct: 266 AAAEADP 272
>gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3]
gi|418406679|ref|ZP_12979998.1| ribonuclease D [Agrobacterium tumefaciens 5A]
gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3]
gi|358007172|gb|EHJ99495.1| ribonuclease D [Agrobacterium tumefaciens 5A]
Length = 386
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P L E+ +P KV H A +DI + G+ +F
Sbjct: 40 VQMASPTLEVLVDPLAKGLDLTP-LFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V +K + DW RPL ++ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSISYDQLVQRIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L E E LTE D+ ++ ++++L L+
Sbjct: 159 VYLALKAQL-----EREGRSLWLTE----EMDILESRETYDMHPDDAWLR---LKSRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+LA++ + WR+ AR+ + VL + + EIA+Q P L RL
Sbjct: 207 PTELAILKFVAAWREREARSRNVPRSRVLKDDAIFEIAQQQPKDTEALSRL 257
>gi|359452611|ref|ZP_09241954.1| ribonuclease D [Pseudoalteromonas sp. BSi20495]
gi|358050322|dbj|GAA78203.1| ribonuclease D [Pseudoalteromonas sp. BSi20495]
Length = 376
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 18/208 (8%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 84
++ KDPT KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 68 QILKDPTVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLG-EGNCMGFALMVKELL 126
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM--KIKLSSMPKESENSDTPL 142
G+ +K +W RPL + L YA DT +LL + ++ +IK + + N +
Sbjct: 127 GIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFKLIIERIKAADLFDIVINESELI 186
Query: 143 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 202
KR++ +L K++ +N++ L +LAV+ L WR A +
Sbjct: 187 AN--KRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRRNKAIRKNL 233
Query: 203 STGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ +VL + EIAK+ P++ LR++
Sbjct: 234 ALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|375291066|ref|YP_005125606.1| ribonuclease D [Corynebacterium diphtheriae 241]
gi|376245898|ref|YP_005136137.1| ribonuclease D [Corynebacterium diphtheriae HC01]
gi|371580737|gb|AEX44404.1| ribonuclease D [Corynebacterium diphtheriae 241]
gi|372108528|gb|AEX74589.1| ribonuclease D [Corynebacterium diphtheriae HC01]
Length = 407
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D L+ + + MK+ L + K E +K+ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHKQE---CAHL 196
Query: 157 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
L ++ S+ + G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INASSHGLDTQRSWQDMKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 214 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 251
I +A++ P + A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|386390385|ref|ZP_10075174.1| ribonuclease D [Haemophilus paraphrohaemolyticus HK411]
gi|385693110|gb|EIG23765.1| ribonuclease D [Haemophilus paraphrohaemolyticus HK411]
Length = 372
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 14/231 (6%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGV 86
+ D KV+H D+ + F + DT + L L + L+ H+ +
Sbjct: 73 LLADQNVIKVLHACSEDLEVFECSFNQLPTPLVDTQVMANFLNLGISVGFAKLVLHYLDI 132
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 146
+K DW RPL + L+YA D YLL IY M+ +L+ ++ ++ +
Sbjct: 133 ELDKGASRTDWLARPLSETQLQYATADVWYLLPIYQKMQTELAQTNWQNAVNEECSAFLT 192
Query: 147 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 206
KR E+E + +Y+ I L QQLAV+ L +WR AR+ + + +
Sbjct: 193 KR---------EREDDLDKAYIKISN--AWRLEPQQLAVLKLLAKWRVEEARSRNLALNF 241
Query: 207 VLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 257
V+ +L EIA+ LP ++L + + R+ +L +++ M A
Sbjct: 242 VVKEASLYEIARILPKNPSQLLDFMHPNE--VRRHGKKILRLVEQGMNTPA 290
>gi|399527748|ref|ZP_10767435.1| 3'-5' exonuclease [Actinomyces sp. ICM39]
gi|398361684|gb|EJN45426.1| 3'-5' exonuclease [Actinomyces sp. ICM39]
Length = 414
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 3 ISTRTED---FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+ R ED F++DT L P L + ++H +D+ L R G+ ++
Sbjct: 70 VQIRREDVGTFLIDTHAL-----PDLSVLQPGVEDVWLLHDCLQDLPNL-RQVGLRPSSL 123
Query: 60 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
FDT A+R++ LER L + G+ K++Q +DW VRPLP E LRYA D L
Sbjct: 124 FDTEIAARLIGLERFGLAAVAEQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTE 183
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGL 173
+Y + +L M + ++ +Q + L + + + G
Sbjct: 184 LYYRLSKRLDQMGR----------------WEWAQQEFAYALSVTPPGPKADRWRSVPG- 226
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
G + + LAV+ L E R+ IA+ D S G ++ N L+ A P
Sbjct: 227 AGKIRSRRGLAVLKALWETRESIAQRIDLSPGRLVRNAALVRAASNPP 274
>gi|380302273|ref|ZP_09851966.1| ribonuclease D [Brachybacterium squillarum M-6-3]
Length = 428
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 18/191 (9%)
Query: 34 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
++ V+H A +D+ L + G++ +FDT A+R+L + + L ++ G++ KE+
Sbjct: 114 REWVLHAAVQDLPSLA-ELGLHPGRLFDTELAARLLGMSKVGLGAVVEETLGLSLAKEHS 172
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYDV 152
ADW RPLP L YA D L+ + D ++ +L +E+ + L E ++R+ +V
Sbjct: 173 AADWSKRPLPAAWLVYAALDVEVLVQVRDELERRL----REAGKHEWALAEFEHERTREV 228
Query: 153 CRQLYEKELLSENSYLHIYGLQGAG--LNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
GL G G + +QLA + RD IA +D S V+ +
Sbjct: 229 ----------GPTRSADWRGLHGIGSLRSTRQLAAARAMWTARDEIAAREDLSPHRVIRD 278
Query: 211 RTLIEIAKQLP 221
R ++ K+ P
Sbjct: 279 REIVAAVKEAP 289
>gi|407700585|ref|YP_006825372.1| ribonuclease D [Alteromonas macleodii str. 'Black Sea 11']
gi|407249732|gb|AFT78917.1| ribonuclease D [Alteromonas macleodii str. 'Black Sea 11']
Length = 385
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 20/222 (9%)
Query: 36 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQ 93
KV+H DI F +FDT A +L + SL Y L+ C ++ +K
Sbjct: 77 KVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMG-PSLGYAKLVELLCDISLDKGES 135
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 153
DW RPL + L YA D YLL Y +L+S +E+ E+
Sbjct: 136 RTDWLARPLREAQLSYAANDVLYLLPCYQ----QLASKVQEAGKVHWIYQEI-------- 183
Query: 154 RQLYEK---ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
L +K ++ + +YL I LN++QL V+ L WR AR D + +V
Sbjct: 184 ALLVDKKRAQMPEDFAYLSIKN--NWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFKE 241
Query: 211 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
L E A++L + + L R+ H + RY ++++I+ +
Sbjct: 242 GHLFEAAQRLIDSKSGLSRINGVNHQSVRRYGDTIITLIEEA 283
>gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
Length = 383
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 10/205 (4%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
E+ +D K++H + D++ ++F M DT +R L ++ L L+ H+ G
Sbjct: 76 ELLRDQQVTKILHACNEDLLVFLQEFDALPQLMMDTQIMARFLGFANSAGLAKLVLHYLG 135
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
+ +K +W RPL L+YA D YLL +Y M+I+L+ P D +
Sbjct: 136 IEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQSPWLQAVIDDCQLAI 195
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
K S +L +++ +YL I + LN +LA + L +WR A A + +
Sbjct: 196 SKTS-----KLDDRD--PNKAYLDIPNVW--KLNPLELARLQLLAKWRQETAMARNLALS 246
Query: 206 YVLPNRTLIEIAKQLPTTAAKLRRL 230
YV+ + L ++AK P +++ L
Sbjct: 247 YVVKSDNLWKVAKNNPRNTSEMLAL 271
>gi|409436727|ref|ZP_11263897.1| Ribonuclease D [Rhizobium mesoamericanum STM3625]
gi|408751651|emb|CCM75051.1| Ribonuclease D [Rhizobium mesoamericanum STM3625]
Length = 381
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P+ E+ +P KV H A +DI + G+ +F
Sbjct: 40 IQMASPTTEVLVDPLAKGLDLKPFF-ELMANPAVLKVFHAARQDIEIIYNRGGLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ GV +K + DW RPL ++ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSVSYDQLVSRTKGVQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L+ +E +S + D+ ++ ++++ L+
Sbjct: 159 VYLYLKAELA---REGRSS------WLREEMDILEARDTYDMHPDDAWQR---LKMRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
Q+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 207 PQELAILKFVAAWREREARSRNVPRSRVLKDDAIYEIAQQQPKDAEALGRL 257
>gi|433657124|ref|YP_007274503.1| Ribonuclease D [Vibrio parahaemolyticus BB22OP]
gi|432507812|gb|AGB09329.1| Ribonuclease D [Vibrio parahaemolyticus BB22OP]
Length = 388
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 206 YVLPNRTLIEIAKQLPTTAAKL 227
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|345430292|ref|YP_004823412.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
Length = 383
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 10/205 (4%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
E+ +D K++H + D++ ++F M DT +R L ++ L L+ H+ G
Sbjct: 76 ELLRDQLVTKILHACNEDLLVFLQEFDALPQPMMDTQIMARFLGFANSAGLAKLVLHYLG 135
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
+ +K +W RPL L+YA D YLL +Y M+I+L+ P D +
Sbjct: 136 IEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQSPWLQAVIDDCQLAI 195
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
K S +L +++ +YL I + LN +LA + L +WR A A + +
Sbjct: 196 SKTS-----KLDDRD--PNKAYLDIPNVW--KLNPLELARLQLLAKWRQETAIARNLALS 246
Query: 206 YVLPNRTLIEIAKQLPTTAAKLRRL 230
YV+ + L ++AK P +++ L
Sbjct: 247 YVVKSDNLWKVAKNNPRNTSEMLAL 271
>gi|330466515|ref|YP_004404258.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
gi|328809486|gb|AEB43658.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
Length = 438
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A++D+ L + G+ +FDT A+R+ ER L L G + K + AD
Sbjct: 128 VLHAANQDLPCLA-ELGLRPRRLFDTELAARLAGFERVGLAALTEQLLGYSLEKHHSAAD 186
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE--SENSDTPLTEVYKRSYDVCR 154
W RPLP+ L YA D L + D + +L+ K +E L + R V
Sbjct: 187 WSSRPLPESWLTYAALDVELLTDLRDALDAELTRQGKSQWAEEEFAALVQAGTRPPRVRA 246
Query: 155 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 214
+ + + S +H + G AQ A V L RD IA D + G VLP+ ++
Sbjct: 247 EPWRR-----TSGIH----RVRGARAQ--ARVRSLWYARDQIAARRDSAPGRVLPDSAIV 295
Query: 215 EIAK 218
A+
Sbjct: 296 AAAE 299
>gi|378696574|ref|YP_005178532.1| ribonuclease D [Haemophilus influenzae 10810]
gi|301169093|emb|CBW28690.1| ribonuclease D [Haemophilus influenzae 10810]
Length = 382
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P KV+H D++ ++F M DT +R L L ++ L L + V
Sbjct: 77 LLSNPKVLKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I + LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPNVW--KLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|145295805|ref|YP_001138626.1| hypothetical protein cgR_1730 [Corynebacterium glutamicum R]
gi|140845725|dbj|BAF54724.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 403
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 34 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 90
++ ++H A D+ WL G+ +FDT A R+ + +L ++ ++ K
Sbjct: 87 QEWIIHAASTDLPSLAWLDLHPGL----LFDTELAGRLAGFDHVNLAAMVEQIFDLHLLK 142
Query: 91 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 150
+ + DW RPLP+ L YA D LL + D+M L + P E +
Sbjct: 143 GHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL------DQQGKLPWAE--QEFV 194
Query: 151 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+ Q +E S+ + GL QL V + RD A + D + G VL N
Sbjct: 195 HIVDQFATMTEPAETSWQDLKGLSTLK-RPDQLVVAREMWLERDSFAASRDLAPGKVLSN 253
Query: 211 RTLIEIAKQLPTTAAKL 227
+ ++E+A+ LP T A+L
Sbjct: 254 KVIVEVARVLPRTPAEL 270
>gi|386843175|ref|YP_006248233.1| ribonuclease D [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103476|gb|AEY92360.1| ribonuclease D [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796466|gb|AGF66515.1| ribonuclease D [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 384
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 12/185 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 74 VLHAATQDLPCL-REIGMVPSRLFDTELAGRLAGFPRVGLGAMVEGVLGFVLEKGHSAVD 132
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E +D
Sbjct: 133 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWALEEFDAIASA 183
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 184 PPAE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQTRDRIAQRRDVSPGKVLSDTAIVEA 241
Query: 217 AKQLP 221
A LP
Sbjct: 242 ALALP 246
>gi|110834629|ref|YP_693488.1| ribonuclease D [Alcanivorax borkumensis SK2]
gi|110647740|emb|CAL17216.1| ribonuclease D [Alcanivorax borkumensis SK2]
Length = 357
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 24/203 (11%)
Query: 22 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 79
GP L VF++ T VMH D+ + G Y + DT Q + L E Y +
Sbjct: 62 GPTLLPVFQNHTL--VMHACSEDLEAIATFTGQYPAAIEDT-QIAAALSGEDMQWGYQKV 118
Query: 80 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 139
+ GV+ K +W RPL DE L YA +D YL + I+ +L + + + +
Sbjct: 119 VQMLLGVDLPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWWEE 178
Query: 140 TPLTEVYKRSYDVCRQLYEK---ELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDV 195
C +L ++ ++L ++++ ++ +GAG L + LAV+A L WRD
Sbjct: 179 E------------CARLLKQARSQVLPQDAWRNV---KGAGLLQGESLAVLAALAPWRDQ 223
Query: 196 IARADDESTGYVLPNRTLIEIAK 218
+AR D +VL + L+++A+
Sbjct: 224 MARERDLPKSFVLKDAQLLDLAR 246
>gi|453077526|ref|ZP_21980272.1| ribonuclease D [Rhodococcus triatomae BKS 15-14]
gi|452759201|gb|EME17574.1| ribonuclease D [Rhodococcus triatomae BKS 15-14]
Length = 399
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ + D G+ ++FDT A R+ +R L ++ G+ K + D
Sbjct: 75 VLHSADQDLPGMA-DLGLRPASLFDTELAGRLAGFDRVGLAAVVERLLGLELQKGHGADD 133
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 152
W RPLP+ L YA D L+ + D M +L S K E L K D
Sbjct: 134 WSRRPLPESWLNYAALDVEVLVELRDAMAAELDSQGKTDWAAQEFEHIRLAGPPKPKPDR 193
Query: 153 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
R+ + I+ L+ + +QLA V L RD IA D + G +LP+
Sbjct: 194 WRRTSQ-----------IHSLK----SPRQLAAVRELWRARDEIAARRDIAPGRILPDSA 238
Query: 213 LIEIAKQLPTTAAKLRRL 230
+ A P + LR L
Sbjct: 239 ITAAAAANPMSVDALRAL 256
>gi|399073593|ref|ZP_10750582.1| ribonuclease D [Caulobacter sp. AP07]
gi|398041375|gb|EJL34440.1| ribonuclease D [Caulobacter sp. AP07]
Length = 389
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 114/267 (42%), Gaps = 16/267 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ + +D L + + P L ++ +DP KV H A +D+ + + +F
Sbjct: 42 IQVASPDTEACIDPLAEGLDLAPLL-DILRDPAVLKVFHAARQDVE-IFNNLNAMPTPLF 99
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A E+ + + L+ + +K + DW RPL + L YA D +L
Sbjct: 100 DTQVAGMAAGFGEQIAYDALVRQMLKIELDKSSRFTDWARRPLSEAQLTYAVADVTHLAT 159
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
++ I++ +L + + + +YDV + + L +
Sbjct: 160 LFPILRERLEKAGRLAWVEEEMKALNDPAAYDVDPEKAWRRLRPRKT------------A 207
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+ LAV + WR+ A+ D+ G +L + + E+A Q PT+ L L +
Sbjct: 208 PKYLAVFKAVAAWRERTAQTRDQPRGRILKDEAIDELATQAPTSLEGLNTLRSVPKGFGG 267
Query: 240 RYMGP-VLSIIKNSMQNAANFEVIAQK 265
GP +L+ IK+++ + + + +K
Sbjct: 268 SKFGPDLLAAIKSALADPEGYAPVLEK 294
>gi|333996298|ref|YP_004528911.1| putative 3'-5' exonuclease [Treponema azotonutricium ZAS-9]
gi|333735924|gb|AEF81873.1| putative 3'-5' exonuclease [Treponema azotonutricium ZAS-9]
Length = 282
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI F++D L + +++ D K+M+GA+ D + +G + N+F
Sbjct: 47 IQIFDGKTYFIIDPLNIE---NDEIKKFLLDKNTVKIMYGAESDASLVYSQYGTQIQNLF 103
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNA--NKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
D A VL ERN L++ L HF + K+YQ+ +W RP+ + + YA D +L
Sbjct: 104 DLQIAVDVLDAERNGLDFALDHFLDIEIKNKKKYQSHNWTTRPIRIDAMEYALNDVAHLF 163
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 150
+ DI+ ++ S K E L E+ ++++
Sbjct: 164 KLKDILMEQVKSKNKYEE----LLYEILRKNF 191
>gi|397670259|ref|YP_006511794.1| putative ribonuclease D [Propionibacterium propionicum F0230a]
gi|395143550|gb|AFN47657.1| putative ribonuclease D [Propionibacterium propionicum F0230a]
Length = 403
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 10/184 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ D GI +FDT A R+L L LL G+ K + +
Sbjct: 93 IIHAASQDLP-CMLDVGIRPPALFDTELAGRLLGAPSVGLAALLETKLGIRLRKAHSADN 151
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D YL+ + D+++ +L + + + + R
Sbjct: 152 WATRPLPTSWLIYAALDVDYLIELADLLRTELVAGNR--------IAWAEEEFIHTLRVF 203
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
+ + G+QG + +QLAV L + RD++AR D +L + +IE
Sbjct: 204 STPPAPRREPWRRLSGIQGLK-HPRQLAVARALWQERDLVARRRDRPPSRILADAAIIEF 262
Query: 217 AKQL 220
A +
Sbjct: 263 ASGI 266
>gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
gi|417320410|ref|ZP_12106956.1| ribonuclease D [Vibrio parahaemolyticus 10329]
gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329]
Length = 388
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 206 YVLPNRTLIEIAKQLPTTAAKL 227
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|430003114|emb|CCF18897.1| Ribonuclease D (RNase D) [Rhizobium sp.]
Length = 381
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P+ E+ D KV H A +DI + + +F
Sbjct: 40 IQMASPTMEVLVDPLAKGLDLKPFF-ELMADRKVIKVFHAARQDIEIIHHLGNLVPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ G + +K + DW RPL D+ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSVSYDQLVQRTTGAHIDKTSRFTDWSRRPLSDKQLEYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L E E LTE + ++ ++++L L+
Sbjct: 159 VYAALKAQL-----EREGRAGWLTE----EMAILESANTYDIHPDDAWLR---LKARLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+LA+V + WR+ AR+ + VL + + EIA+Q P L RL
Sbjct: 207 PTELAIVKFVAAWREREARSRNVPRSRVLKDDAIYEIAQQQPKDTDALSRL 257
>gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 396
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 22/257 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++T +D + L +GP L + DP KV+H A +D+ L + G +F
Sbjct: 55 VQVATPDALACIDPIAL-PDLGP-LAALLHDPAVTKVVHAAHQDMEILLQSTGRVPTPVF 112
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A +L + + Y ++ + + +K + DW RPL LRYA +D +L
Sbjct: 113 DTQVAVSLLG-HGDQIGYARMVQIYLDLELDKGHTRTDWSQRPLETAQLRYAADDVRHLA 171
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG---LQG 175
+Y ++ L E + L+E + + R L + +N++ I G L+G
Sbjct: 172 RVYPMILKDL-----EEKGRLDWLSEDFAAISEESRYLPD----PDNAWRRIKGQKYLKG 222
Query: 176 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 235
A QLAV+ L WR+ A D ++L + L E++++ PT A L ++ +
Sbjct: 223 A-----QLAVLQALAAWRERQAMEKDLPKRWILSDDVLTELSQRSPTDLASLAKVRGLED 277
Query: 236 SYIERYMGPVLSIIKNS 252
++R+ +L++++ +
Sbjct: 278 KTLQRHGETLLALVREA 294
>gi|452948511|gb|EME53989.1| ribonuclease D [Amycolatopsis decaplanina DSM 44594]
Length = 421
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 15/221 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + L Q+ P L EV + + V+H A +D+ L + + ++FDT A R+
Sbjct: 86 FLIDPIPLEGQLEP-LAEVLNN--AEWVLHAASQDLPCLA-ELDLRPKSLFDTELAGRLA 141
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
ER +L L+ G K + ADW RPLP + L YA D L+ + + ++ L+
Sbjct: 142 GYERVALGTLVELLLGYQLEKGHSAADWSKRPLPVDWLNYAALDVELLIELREKLEADLA 201
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
+ K E ++ ++ R + G+ +A+ LA V L
Sbjct: 202 AQGK---------LEWAQQEFEAVRT-APPPAPRAEPWRRTSGVHKIR-SARGLAAVREL 250
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ RD +AR D + +LP+ +I P T +L+ L
Sbjct: 251 WQARDELARKRDRAPSRILPDSAIINAVTADPKTVEQLQAL 291
>gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
Length = 372
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 206 YVLPNRTLIEIAKQLPTTAAKL 227
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|153840116|ref|ZP_01992783.1| ribonuclease D, partial [Vibrio parahaemolyticus AQ3810]
gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
Length = 341
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 206 YVLPNRTLIEIAKQLPTTAAKL 227
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|68248994|ref|YP_248106.1| ribonuclease D [Haemophilus influenzae 86-028NP]
gi|68057193|gb|AAX87446.1| ribonuclease D [Haemophilus influenzae 86-028NP]
Length = 380
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 77 LLSNPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPFELSRLRILAQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSDNLWKVAKNNPRNTSEM 268
>gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
Length = 354
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 206 YVLPNRTLIEIAKQLPTTAAKL 227
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|456387927|gb|EMF53417.1| exonuclease [Streptomyces bottropensis ATCC 25435]
Length = 399
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L R+ + +FDT A R+ R L ++ G K + D
Sbjct: 84 VLHAATQDLPCL-REIDMVPTRIFDTELAGRLAGFPRVGLGAMVEGVLGYVLEKGHSAVD 142
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 143 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 193
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E ++ + G+ +Q+AVV + E RD IA+ D S G VL + ++E
Sbjct: 194 PPAE-PRKDPWRRTSGMHKV-RRRRQMAVVREMWEARDRIAQRRDVSPGKVLSDAAIVEA 251
Query: 217 AKQLPTTAAKLRRLLKSKHSYIERYM 242
+ LP A L L H R +
Sbjct: 252 SLALPVNAQALAALNGFGHRMGRRQL 277
>gi|417971554|ref|ZP_12612477.1| ribonuclease D [Corynebacterium glutamicum S9114]
gi|344044036|gb|EGV39717.1| ribonuclease D [Corynebacterium glutamicum S9114]
Length = 403
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 34 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 90
++ ++H A D+ WL G+ +FDT A R+ + +L ++ ++ K
Sbjct: 87 QEWIIHAASTDLPSLAWLDLHPGL----LFDTELAGRLAGFDHVNLAAMVEQIFDLHLLK 142
Query: 91 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 150
+ + DW RPLP+ L YA D LL + D+M L + P E +
Sbjct: 143 GHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL------DQQGKLPWAE--QEFV 194
Query: 151 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
+ Q +E S+ + GL QL V + RD A + D + G VL N
Sbjct: 195 HIVDQFATMTEPAETSWQDLKGLSTLK-RPDQLVVAREMWLERDSFAASRDLAPGKVLSN 253
Query: 211 RTLIEIAKQLPTTAAKL 227
+ ++E+A+ LP T A+L
Sbjct: 254 KVIVEVARVLPRTPAEL 270
>gi|335035213|ref|ZP_08528556.1| ribonuclease D [Agrobacterium sp. ATCC 31749]
gi|333793644|gb|EGL64998.1| ribonuclease D [Agrobacterium sp. ATCC 31749]
Length = 388
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P E+ +P KV H A +DI + G+ +F
Sbjct: 40 VQMASPTLEVLVDPLAKGIDLTPMF-ELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V +K + DW RPL ++ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L E E LTE ++ ++ ++++L L+
Sbjct: 159 VYLALKAQL-----EREGRSLWLTE----EMNILESRDTYDMHPDDAWLR---LKSRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 207 PTELAILKFVAAWREREARSRNVPRSRVLKDDGIFEIAQQQPKDAEALSRL 257
>gi|406597337|ref|YP_006748467.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
gi|407684351|ref|YP_006799525.1| ribonuclease D [Alteromonas macleodii str. 'English Channel 673']
gi|407688279|ref|YP_006803452.1| ribonuclease D [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|406374658|gb|AFS37913.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
gi|407245962|gb|AFT75148.1| ribonuclease D [Alteromonas macleodii str. 'English Channel 673']
gi|407291659|gb|AFT95971.1| ribonuclease D [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 385
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 36 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQ 93
KV+H DI F +FDT A +L + SL Y L+ C ++ +K
Sbjct: 77 KVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMG-PSLGYAKLVELLCDISLDKGES 135
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY-----KR 148
DW RPL + L YA D YLL Y +L+S +E+ E+ KR
Sbjct: 136 RTDWLARPLREAQLSYAANDVLYLLPCYQ----QLASKVQEAGKVHWIYQEIALLVDKKR 191
Query: 149 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 208
+ ++ + +YL I LN++QL V+ L WR AR D + +V
Sbjct: 192 A----------QMPEDFAYLSIKN--NWRLNSEQLTVLQALAAWRLNTARKKDLALNFVF 239
Query: 209 PNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 252
L E A++L + + L R+ H + RY ++++I+ +
Sbjct: 240 KEGHLFEAAQRLIDSKSGLSRINGVNHQSVRRYGDTIITLIEEA 283
>gi|259908266|ref|YP_002648622.1| ribonuclease D [Erwinia pyrifoliae Ep1/96]
gi|387871111|ref|YP_005802484.1| protein rnd [Erwinia pyrifoliae DSM 12163]
gi|224963888|emb|CAX55391.1| Ribonuclease D [Erwinia pyrifoliae Ep1/96]
gi|283478197|emb|CAY74113.1| rnd [Erwinia pyrifoliae DSM 12163]
Length = 369
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 24/213 (11%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT----GQASRVLKLERNSLEYLL 80
R++ D K +H D+ Q +FG+ M DT + R L ++
Sbjct: 62 FRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLSC---GFATIV 118
Query: 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 140
F G+ +K DW RPL ++ RYA D YLL I S + E+E +
Sbjct: 119 ESFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIA-------SKLVDETEAAGQ 171
Query: 141 PLTEVYKRSYDVCRQLYEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 197
+ D CR L ++ L + +Y I L QQLA + + WR IA
Sbjct: 172 -----MAAALDECRLLCQRRTSVLKPQEAYREITN--AWQLRPQQLAALRLMAAWRLEIA 224
Query: 198 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
R D + +V+ L ++A+ +P T +L L
Sbjct: 225 REKDMAVNFVVREENLWKVARFMPGTLGELDHL 257
>gi|424914689|ref|ZP_18338053.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392850865|gb|EJB03386.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 381
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P+ E+ DP KV H A +DI + + +F
Sbjct: 40 IQMASPTTEVLVDPLAKGIDLTPFF-ELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V+ +K + DW RPL D+ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSVSYDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L + E + L+E D+ +L ++++ L+
Sbjct: 159 VYLSLKAEL-----DREGRTSWLSE----EMDILEARETYDLHPDDAWQR---LKMRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
Q+LA++ + WR+ AR+ + VL + + EIA+Q P L RL
Sbjct: 207 PQELAILKFVAAWREREARSRNVPRSRVLKDDAIYEIAQQQPKDTEALGRL 257
>gi|260582345|ref|ZP_05850138.1| ribonuclease D [Haemophilus influenzae NT127]
gi|260094713|gb|EEW78608.1| ribonuclease D [Haemophilus influenzae NT127]
Length = 380
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 77 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|392532926|ref|ZP_10280063.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
arctica A 37-1-2]
Length = 376
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 22/210 (10%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 84
E+ KDP KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 68 EILKDPAVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLG-EGNCMGFALMVKELQ 126
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
G+ +K +W RPL + L YA DT YLL ++++ ++++ + D + E
Sbjct: 127 GIEIDKSESRTNWLQRPLTKKQLDYAAADTFYLLPCFELIIDRINA----AGFFDIVINE 182
Query: 145 ----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
KR++ +L K++ +N++ L +LAV+ L WR A
Sbjct: 183 SELIAKKRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRRNKAIKK 231
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + +VL + EIAK+ P++ LR++
Sbjct: 232 NLALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|385788545|ref|YP_005819654.1| ribonuclease D [Erwinia sp. Ejp617]
gi|310767817|gb|ADP12767.1| ribonuclease D [Erwinia sp. Ejp617]
Length = 369
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 24/213 (11%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT----GQASRVLKLERNSLEYLL 80
R++ D K +H D+ Q +FG+ M DT + R L ++
Sbjct: 62 FRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS---CGFATIV 118
Query: 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 140
F G+ +K DW RPL ++ RYA D YLL I S + E+E +
Sbjct: 119 ESFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIA-------SKLVDETEAAGQ 171
Query: 141 PLTEVYKRSYDVCRQLYEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 197
+ D CR L ++ L + +Y I L QQLA + + WR IA
Sbjct: 172 -----MAAALDECRLLCQRRTSVLKPQEAYREITN--AWQLRPQQLAALRLMAAWRLEIA 224
Query: 198 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
R D + +V+ L ++A+ +P T +L L
Sbjct: 225 REKDMAVNFVVREENLWKVARFMPGTLGELDHL 257
>gi|333919445|ref|YP_004493026.1| ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
gi|333481666|gb|AEF40226.1| Ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
Length = 417
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 15/219 (6%)
Query: 10 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 69
F++D + LR P + +P + V+H AD+D+ L + G+ +FDT ASR+
Sbjct: 76 FLIDPIPLRGSFEPLAAVI--NPLEW-VLHAADQDLPGLA-ELGLTPTALFDTELASRLA 131
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
LER L + G + K + ADW RPLP L YA D LL + + + +L+
Sbjct: 132 GLERVGLAAISESLLGFSLAKGHGAADWSSRPLPTSWLNYAALDVEILLDLREALDRELT 191
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
K ++ + R+ E+ + N I+ ++ + + LA L
Sbjct: 192 YQGKREWATE---EFEFVRTRPALAPSPERWRRTAN----IHTIR----DKRGLATAREL 240
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 228
RD+IA +D + +LP+ ++ A + P TAA LR
Sbjct: 241 WFTRDMIAEQEDIAPKRILPDAAIVAAAVRRPRTAADLR 279
>gi|359441689|ref|ZP_09231579.1| ribonuclease D [Pseudoalteromonas sp. BSi20429]
gi|358036517|dbj|GAA67828.1| ribonuclease D [Pseudoalteromonas sp. BSi20429]
Length = 376
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 22/210 (10%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 84
E+ KDP KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 68 EILKDPAVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLG-EGNCMGFALMVKELQ 126
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
G+ +K +W RPL + L YA DT YLL ++++ ++++ + D + E
Sbjct: 127 GIEIDKSESRTNWLQRPLTKKQLDYAAADTFYLLPCFELIIDRINA----AGFFDIVINE 182
Query: 145 ----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
KR++ +L K++ +N++ L +LAV+ L WR A
Sbjct: 183 SELIAKKRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRRNKAIKK 231
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + +VL + EIAK+ P++ LR++
Sbjct: 232 NLALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|365538247|ref|ZP_09363422.1| ribonuclease D [Vibrio ordalii ATCC 33509]
Length = 371
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 16/240 (6%)
Query: 21 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYL 79
+ P++ E+ +D + KV+H D+ FG M DT + L ++ L
Sbjct: 63 MAPFV-ELLQDTSVLKVLHACGEDLEVFHNAFGCTPFPMVDTQVMAAFLGHGLSTGFAAL 121
Query: 80 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM-PKESENS 138
++ F G+ +K DW RPL + L YA D YLL IY+ + K++ ++
Sbjct: 122 VNEFLGIEVDKSESRTDWLARPLSQKQLDYAAADVFYLLPIYEKLLDKVTQAGWWQAAQQ 181
Query: 139 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 198
++ L V KR K+ + +YL I G L Q+LA++ L WR A
Sbjct: 182 ESELLSV-KRI---------KQTHPDLAYLDIKG--AWQLTPQELAILKPLATWRYEEAV 229
Query: 199 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
D + +V+ L+ IA+ T+A+++ S I+R+ +++++K Q A+
Sbjct: 230 RRDLALNFVVKETDLLTIARLGLTSASRMIDAGADPRS-IQRHSAKIIALVKAGQQTPAD 288
>gi|159163846|pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome
Component 10
Length = 124
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 159 KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 218
K + ++ SYL +Y Q LN QQL L WRD AR +DES GYVLPN +++IA+
Sbjct: 8 KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAE 67
Query: 219 QLP 221
+LP
Sbjct: 68 ELP 70
>gi|388599678|ref|ZP_10158074.1| ribonuclease D [Vibrio campbellii DS40M4]
Length = 372
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 13/233 (5%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 68 ELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 127
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
V +K DW RPL + L YA D HYL+ +Y+ + K+ ++ E
Sbjct: 128 VELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKV---------NEAGWWEA 178
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++ D+ + + EN+YL I G L A +LA++ L WR A D +
Sbjct: 179 VQQESDLLVSKRIRNVNEENAYLDIKG--AWQLRASELAILKPLATWRYREAIKRDLALN 236
Query: 206 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
++ L+ +A+ L T K I R+ + I+K + Q A+
Sbjct: 237 FIFKEGDLLTVAR-LGLTGFKKMEAEGIDIRAINRHGAKIAGIVKQAKQTPAD 288
>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
Length = 388
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P E+ +P KV H A +DI + G+ +F
Sbjct: 40 VQMASPTLEVLVDPLAKGIDLTPMF-ELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V +K + DW RPL ++ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L E E LTE ++ ++ ++++L L+
Sbjct: 159 VYLSLKAQL-----EREGRSLWLTE----EMNILESRDTYDMHPDDAWLR---LKSRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 207 PTELAILKFVAAWREREARSRNVPRSRVLKDDGIFEIAQQQPKDAEALSRL 257
>gi|227495500|ref|ZP_03925816.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
gi|226831047|gb|EEH63430.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
Length = 402
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 18/190 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+DI L R G+ + +FDT A+R+L +R L + GV +K +Q+ D
Sbjct: 92 ILHDADQDIASL-RMCGLEIPELFDTMLAARLLGFQRFGLAAVCEQILGVTLDKNHQSDD 150
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMK---IKLSSMPKESENSDTPLTEVYKRSYDVC 153
W RPLP LRYA D L +Y+ M K + + LT K+
Sbjct: 151 WSTRPLPRPWLRYAALDVELLTDLYEKMSHSLFKANRWEWAQQEFHNILTRPTKKP---- 206
Query: 154 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
+ ++ G+ G + + LA++ L + R+ IA D ++ NRTL
Sbjct: 207 ---------DSEPWRNLRGM-GKIRSRRHLAILEELWKTRERIAAEIDLEPTRLIKNRTL 256
Query: 214 IEIAKQLPTT 223
+ +A P T
Sbjct: 257 VALAFNPPRT 266
>gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619]
gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619]
Length = 377
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 110/255 (43%), Gaps = 19/255 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI +++D L L V P L E+ +D KV+H D+ L R G +F
Sbjct: 46 IQIGDGERAYLIDPL-LIVDWQP-LGELLEDAGVVKVLHACSEDLEVLLRLTGKLPQPLF 103
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L L S+ Y L+ G+ K +DW RPL D + YA ED +L
Sbjct: 104 DTQLAAGYLNLG-FSMGYSRLVQEVLGLELPKGETRSDWLQRPLSDTQVSYAAEDAVHLA 162
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
++ ++ P+ S++ + E R+ E E L + L L
Sbjct: 163 ELFAALR------PRLSDDKYAWVLEDGAELVAALRREVEPETLYRDVKL------AWKL 210
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 238
QQLAV+ LC WR+ AR+ D +L +L +AK P + L + + H
Sbjct: 211 GRQQLAVLRELCAWREREARSRDVPRNRILKEHSLWPMAKNQPDNLSALAK-IDEMHPRT 269
Query: 239 ERYMGPVL-SIIKNS 252
R GP L +IK +
Sbjct: 270 IRQDGPFLIELIKRA 284
>gi|154253761|ref|YP_001414585.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
gi|154157711|gb|ABS64928.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
Length = 427
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 28/235 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ +++ +VD L + + P+ + K+ KV H A +DI + +F
Sbjct: 85 IQLAGPSDELIVDPLAPDLDLAPFY-ALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLF 143
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + E L+ G + +K + DW RPL D+ L+YA D YL
Sbjct: 144 DTQVAAMVCGFGDSVGYETLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRT 203
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE------LLSENSYLHIYGL 173
IY+++ +L+ KR++ V ++ + + EN++ +
Sbjct: 204 IYEVLAKRLTHT---------------KRAHWVAEEMAVLQDPETYAMRPENAWKRV--- 245
Query: 174 QGAGLNAQQ-LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
A Q+ LAV+ + WR+ A+ D V+ + L EIA Q+P T + L
Sbjct: 246 -KARFRGQRGLAVLVEVAAWRERQAQERDLPRSRVMKDDALAEIATQIPRTISDL 299
>gi|376290603|ref|YP_005162850.1| ribonuclease D [Corynebacterium diphtheriae C7 (beta)]
gi|372103999|gb|AEX67596.1| ribonuclease D [Corynebacterium diphtheriae C7 (beta)]
Length = 407
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP L YA D L+ + + MK+ L + K E +++ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHRQE---CAHL 196
Query: 157 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
L ++ S+ + G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INTSSHGLDTQRSWQDMKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 214 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 251
I +A++ P + A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|409397310|ref|ZP_11248230.1| ribonuclease D [Pseudomonas sp. Chol1]
gi|409398328|ref|ZP_11249142.1| ribonuclease D [Pseudomonas sp. Chol1]
gi|409117258|gb|EKM93693.1| ribonuclease D [Pseudomonas sp. Chol1]
gi|409118194|gb|EKM94598.1| ribonuclease D [Pseudomonas sp. Chol1]
Length = 405
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 121/279 (43%), Gaps = 29/279 (10%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCG 85
+ +D KV+H D+ L R G +FDT A L L S+ Y L+H G
Sbjct: 101 LLQDTAVVKVLHACGEDLEVLSRLTGQLPAPLFDTQLAGGYLNLG-FSMGYSRLVHAVLG 159
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
++ K+ +DW RPL + +RYA ED +L +Y + +P+ SE+ + E
Sbjct: 160 LDLPKDETRSDWLQRPLSEMQMRYAAEDVQHLAELYAAL------LPRLSEDKRRWVVE- 212
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++ L ++E + +Y + Q L QQLAV+ L WR+ ARA ++
Sbjct: 213 --DGAELVANL-QRETDPDEAYREVK--QAWRLRPQQLAVLRVLTAWRERQARARNQPRN 267
Query: 206 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQK 265
+L +L +A+ P L R ++ H R G L E+I Q
Sbjct: 268 RILREASLWPLARTQPKDLVALAR-IEDMHPRTVRQDGETL------------LELIRQA 314
Query: 266 LKEERMEVASEETEVLVLDTSSNL-KIPNVGRESVDGVD 303
E + E L L+ +S L K+ VG+ + + +D
Sbjct: 315 AALPAQEWPAALPEPLPLEAASVLKKLRAVGQRTANELD 353
>gi|342179231|sp|A7HYE5.2|RND_PARL1 RecName: Full=Ribonuclease D; Short=RNase D
Length = 384
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 28/235 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ +++ +VD L + + P+ + K+ KV H A +DI + +F
Sbjct: 42 IQLAGPSDELIVDPLAPDLDLAPFY-ALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLF 100
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + E L+ G + +K + DW RPL D+ L+YA D YL
Sbjct: 101 DTQVAAMVCGFGDSVGYETLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRT 160
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE------LLSENSYLHIYGL 173
IY+++ +L+ KR++ V ++ + + EN++ +
Sbjct: 161 IYEVLAKRLTHT---------------KRAHWVAEEMAVLQDPETYAMRPENAWKRV--- 202
Query: 174 QGAGLNAQQ-LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
A Q+ LAV+ + WR+ A+ D V+ + L EIA Q+P T + L
Sbjct: 203 -KARFRGQRGLAVLVEVAAWRERQAQERDLPRSRVMKDDALAEIATQIPRTISDL 256
>gi|425734728|ref|ZP_18853045.1| 3'-5' exonuclease family protein [Brevibacterium casei S18]
gi|425480664|gb|EKU47828.1| 3'-5' exonuclease family protein [Brevibacterium casei S18]
Length = 390
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H +D+ LQ D G+ +FDT A+R+L E+ L + GV KE+ D
Sbjct: 91 VIHSVTQDLPCLQ-DRGMVPTALFDTELAARLLGWEKFGLAAVAERTLGVRLAKEHSAVD 149
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 133
W RPLP+E L YA D LL I D + +L + K
Sbjct: 150 WSTRPLPEEWLNYAALDVEVLLPIRDALAAELVAAGK 186
>gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
Length = 325
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 206 YVLPNRTLIEIAKQLPTTAAKL 227
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|397565072|gb|EJK44464.1| hypothetical protein THAOC_36991 [Thalassiosira oceanica]
Length = 735
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 8 EDFVVDTLKLRVQ--VGPYLREVFKDPTKKKVMHG-ADRDIVWLQRDFGIYLCNMFDTGQ 64
+DFV+D L V + L +F DP+ K+ H D L +DFGI + N FDT +
Sbjct: 334 KDFVIDPLAPGVWDAIPSILGPIFADPSVVKIGHAIGGMDTKSLHQDFGILVVNAFDTYE 393
Query: 65 ASRVLKLERNS---LEYLLHHFCGVNANK------EYQNADWRVRPLPDEMLRYAREDTH 115
+ RVL R+ L L + + K YQ +DWR+RPL D L Y R D
Sbjct: 394 SCRVLMGARDGGLGLAKLCRRYGLPDWEKYQALKNRYQKSDWRMRPLDDGALTYGRYDVR 453
Query: 116 YLLYIYDIM 124
YL + ++
Sbjct: 454 YLCALRRLL 462
>gi|343497084|ref|ZP_08735165.1| ribonuclease D [Vibrio nigripulchritudo ATCC 27043]
gi|342820106|gb|EGU54936.1| ribonuclease D [Vibrio nigripulchritudo ATCC 27043]
Length = 371
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 19/232 (8%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 85
++ KD + KV+H D+ FG M DT + L ++ L+ + G
Sbjct: 68 DLLKDTSVLKVLHACGEDLEVFAHVFGTIPVPMMDTQIMAAFLGHGLSTGFAALVKEYLG 127
Query: 86 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 145
V +K DW RPL D+ L YA D HYLL +Y+ + E+ D E
Sbjct: 128 VELDKSEARTDWLARPLTDKQLEYAAADVHYLLPMYEKL---------EAAVKDAGWWEA 178
Query: 146 YKRSYDVCRQLYEKELLSEN---SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 202
++ D+ + K +++ N +YL I G L QLA++ L +WR A D
Sbjct: 179 AQQESDL---IASKRVVTHNPEKAYLDIKG--AWQLRPNQLAILKILAQWRLEEALKRDL 233
Query: 203 STGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 254
+ +V + L A+ K H I R+ V+S++K Q
Sbjct: 234 ALNFVFREQNLWACAR-FGIKGLKQMEQQGFDHREIRRHGNTVISMVKKGEQ 284
>gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
Length = 382
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 25/236 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q +T T + ++D + + P+L ++ +DP KV H A +D + G MF
Sbjct: 42 IQAATPTHEAIIDPQADGLDLTPFL-DILRDPAIVKVFHAARQDTEIFVK-LGAMPKPMF 99
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ ++ + + L+ ++ +K + DW RPL D L YA D +L
Sbjct: 100 DTQVAAMAAGFGDQVAYDGLVRQMLKIDLDKGSRFTDWSRRPLSDAQLTYAIGDVTHLAA 159
Query: 120 IYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYD-VCRQLYEKELLSENSYLHIYGLQ 174
+Y ++ +L+ + SE D E+Y + D ++L K+
Sbjct: 160 LYPKLRDRLAREGRLDWVTSEMEDLVNPELYDTTPDKAWKRLKPKKY------------- 206
Query: 175 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
NA+ LA WR+ A+ D+ G +L + + EIA Q+PT RL
Sbjct: 207 ----NAKYLAAFKATAVWREQAAQDRDQPRGRILKDEAIDEIATQVPTDVEAFNRL 258
>gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222]
gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222]
Length = 397
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 14/193 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ KD + KV+H D+ Q FG M DT + L ++ L+ F GV
Sbjct: 94 LLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAALVSEFVGV 153
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD-IMKIKLSSMPKESENSDTPLTEV 145
+ +K DW RPL + L YA D HYL+ +Y+ I++ + + E+ ++ L +V
Sbjct: 154 DLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKILEKVMEAGWWEAAQQESDL-QV 212
Query: 146 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 205
KR ++ +N+YL I G L QQLA++ L WR A D +
Sbjct: 213 AKRI---------RKANPDNAYLDIKG--AWQLKPQQLAILRPLATWRLKEAIKRDLALN 261
Query: 206 YVLPNRTLIEIAK 218
+V + L +A+
Sbjct: 262 FVFKEQDLWAVAR 274
>gi|85712692|ref|ZP_01043738.1| Ribonuclease D [Idiomarina baltica OS145]
gi|85693542|gb|EAQ31494.1| Ribonuclease D [Idiomarina baltica OS145]
Length = 367
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 18/234 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNM 59
+Q++ E F++D L + + + L ++ DP V+H DI ++ + G +
Sbjct: 34 VQLNVDGETFIIDPL-IDIDLTA-LWQLIADPDVVTVLHAGGEDIELFYHQSNGQKPRAV 91
Query: 60 FDTGQASRVLKLERNSLEY---LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 116
FDT A+ + + +SL Y + F GV +K DW RPL +E L YA D Y
Sbjct: 92 FDTQIAAGFIGMG-SSLGYASLVEQLFDGVTLDKSQSRTDWLKRPLSEEQLTYAAADVSY 150
Query: 117 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
L +Y + +++ + +V KR+ + R L L+++
Sbjct: 151 LNSMYPWLVEQVAQAHVADIVVEESQLQVSKRTQVIPRHL-----------LYLFVGNAW 199
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
LN +QL V+ L WR A +++ G++ + L+E+A+++P + + L ++
Sbjct: 200 QLNQKQLQVMKALAAWRLDKAMSENMPLGFIFKDGVLLELARKMPQSKSDLYKI 253
>gi|417839505|ref|ZP_12485683.1| Ribonuclease D [Haemophilus haemolyticus M19107]
gi|341952473|gb|EGT78999.1| Ribonuclease D [Haemophilus haemolyticus M19107]
Length = 380
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L + L L + V
Sbjct: 77 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSVGLAKLAQQYLNV 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 146
+K +W RPL D L+YA D YLL +Y I++ +L+ P E D +
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQALRDDCELAIS 196
Query: 147 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 206
K +L E++ SE +YL I + LN +L+ + L +WR +A D + Y
Sbjct: 197 K-----THKLQERD--SEKAYLDIPNVW--KLNPLELSRLRILAQWRQNVAIERDLALSY 247
Query: 207 VLPNRTLIEIAKQLPTTAAKL 227
++ + L ++AK P +++
Sbjct: 248 IVKSDNLWKVAKNNPRNTSEM 268
>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium fabrum str. C58]
gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium fabrum str. C58]
Length = 388
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P E+ +P KV H A +DI + G+ +F
Sbjct: 40 VQMASPTLEVLVDPLAKGIDLTPMF-ELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V +K + DW RPL ++ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L E E LTE ++ ++ ++++L L+
Sbjct: 159 VYLSLKAQL-----EREGRSLWLTE----EMNILESRDTYDMHPDDAWLR---LKSRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 207 PTELAILKFVAAWREREARSRNVPRSRVLKDDGIFEIAQQQPKDAEALSRL 257
>gi|319898087|ref|YP_004136284.1| ribonuclease d [Haemophilus influenzae F3031]
gi|317433593|emb|CBY81977.1| ribonuclease D [Haemophilus influenzae F3031]
Length = 380
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 77 LLSNPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLGQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|145638698|ref|ZP_01794307.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
gi|145272293|gb|EDK12201.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
gi|309750190|gb|ADO80174.1| Ribonuclease D [Haemophilus influenzae R2866]
Length = 380
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P KV+H D++ ++F M DT +R L L ++ L L + V
Sbjct: 77 LLANPKVLKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL + L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSNIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|392420519|ref|YP_006457123.1| ribonuclease D [Pseudomonas stutzeri CCUG 29243]
gi|390982707|gb|AFM32700.1| ribonuclease D [Pseudomonas stutzeri CCUG 29243]
Length = 374
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 17/232 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++D L +R + +DP KV+H D+ L R G +F
Sbjct: 46 IQVGDGRRAYLIDPLSVRDWSA--FAALLQDPAVVKVLHACSEDLEVLLRLTGSLPQPLF 103
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + S+ Y L+ G+ K +DW RPL D +RYA ED +L
Sbjct: 104 DTQLAAGYLNIG-FSMGYSRLVQAVLGIELPKGETRSDWLQRPLSDMQVRYAAEDAQHLA 162
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y+ + +PK SE+ V + ++ L ++E + +Y + Q L
Sbjct: 163 ELYEAL------LPKLSEDKR---AWVLEDGAELVANL-QRESDPDEAYRDVK--QAWRL 210
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
QQLAV+ L WR+ ARA ++ VL +L +A+ P L R+
Sbjct: 211 KPQQLAVLKVLAAWRERQARARNQPRNRVLREASLWPLARTQPRDLVTLARI 262
>gi|229846478|ref|ZP_04466586.1| ribonuclease D [Haemophilus influenzae 7P49H1]
gi|229810571|gb|EEP46289.1| ribonuclease D [Haemophilus influenzae 7P49H1]
Length = 380
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R + L ++ L L + +
Sbjct: 77 LLSNPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFIGLGTSAGLAKLAQQYLNI 136
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|329122266|ref|ZP_08250854.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
gi|327473827|gb|EGF19244.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
Length = 399
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 96 LLSNPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 155
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 215
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLGQWRQNVAIERDLA 263
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|408827128|ref|ZP_11212018.1| ribonuclease D [Streptomyces somaliensis DSM 40738]
Length = 384
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 12/194 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 73 ILHAATQDLPCL-REIGMVPSELFDTELAGRLAGFPRVGLGAMVESVLGYVLEKGHSAVD 131
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP+ LRYA D L+ + D ++ +L K + +
Sbjct: 132 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWAR-----QEFAAIAAAPPPP 186
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
K+ S +H +QLAVV L RD IA+ D S G VL + ++E
Sbjct: 187 PRKDPWRRTSGMHKV------RRRRQLAVVRELWTVRDRIAQRRDVSPGKVLSDAAIVEA 240
Query: 217 AKQLPTTAAKLRRL 230
A LP L L
Sbjct: 241 ALALPADVQALTAL 254
>gi|443289631|ref|ZP_21028725.1| 3'-5' exonuclease [Micromonospora lupini str. Lupac 08]
gi|385887246|emb|CCH16799.1| 3'-5' exonuclease [Micromonospora lupini str. Lupac 08]
Length = 441
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H A +D+ L + G+ +FDT A+R+ ER L L G K + AD
Sbjct: 128 VLHAASQDLACLA-EVGLRPRRLFDTELAARLAGFERVGLAALTEQLLGFTLEKHHSAAD 186
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCR 154
W RPLP+ L YA D L + D + +L+ K + ++ L R V
Sbjct: 187 WSSRPLPESWLTYAALDVEMLTDLRDALDAELTRQGKSAWAAEEFAALVRTGARPPRVRA 246
Query: 155 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 214
+ + + S +H + G AQ A V L RD IA D + G VLP+ ++
Sbjct: 247 EPWRR-----TSGIH----RVRGARAQ--ARVRSLWYARDQIAARRDAAPGRVLPDSAIV 295
Query: 215 EIAKQLP 221
A+ P
Sbjct: 296 AAAELDP 302
>gi|423712809|ref|ZP_17687107.1| ribonuclease D [Bartonella washoensis Sb944nv]
gi|395410505|gb|EJF77059.1| ribonuclease D [Bartonella washoensis Sb944nv]
Length = 384
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ ++D + + + P+ ++ D KV H A +DI + GI +F
Sbjct: 43 IQLASPDTTMLIDPIAPDIDLKPFF-DLMADKKIVKVFHAARQDIETIYHLGGIVPYPLF 101
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A + + S + ++ G + +K + DW RPL ++ L YA D YL
Sbjct: 102 DTQIAGSICGFGDSISYDQIVQRCTGHHIDKSSRFTDWSCRPLSEKQLLYALADVTYLRD 161
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
IY ++K +L + D + ++YD + E+ + L
Sbjct: 162 IYLLLKKQLEKNKRTHWMDDEIAILLNPKTYD----------MPEDEAWKKVKGKVKKL- 210
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
++LA++ + WR+ AR + +++ + LIEIA Q PT + L RL
Sbjct: 211 -RELAILQKIAAWREREARKHNVPRRHIMKDEHLIEIAIQQPTDESALNRL 260
>gi|417749597|ref|ZP_12397989.1| ribonuclease D [Mycobacterium avium subsp. paratuberculosis S397]
gi|336458819|gb|EGO37776.1| ribonuclease D [Mycobacterium avium subsp. paratuberculosis S397]
Length = 428
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 33 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 92
+ + ++H AD+D+ L + G+ ++DT A R+ ER +L ++ G K +
Sbjct: 103 SDEWILHSADQDLPCLA-EVGMRPPALYDTELAGRLAGFERVNLATMVERLLGFGLAKGH 161
Query: 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 152
ADW RPLP E L YA D L+ + + L+ K T+ + +D
Sbjct: 162 GAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGK---------TDWAAQEFDY 212
Query: 153 CRQLYEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 209
R+ KE + + G+ + + LA V L RD IA+ D + +LP
Sbjct: 213 LREAGSKEPGPAARRDRWRRTSGIHRV-RDQRGLAAVRELWLTRDRIAQRRDIAPRRILP 271
Query: 210 NRTLIEIAKQLPTTAAKL 227
+ +IE A PTT +L
Sbjct: 272 DSAIIEAALANPTTIEEL 289
>gi|190891177|ref|YP_001977719.1| ribonuclease III protein [Rhizobium etli CIAT 652]
gi|190696456|gb|ACE90541.1| ribonuclease III protein [Rhizobium etli CIAT 652]
Length = 381
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ T + +VD L + + P+ E+ D KV H A +DI + + +F
Sbjct: 40 IQMASPTLEVLVDPLAKGIDLAPFF-ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIF 98
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + S + L+ V+ +K + DW RPL D+ L YA D +L
Sbjct: 99 DTQVAAMVCGFGDSVSYDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRD 158
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y +K +L + E + LTE + + R+ Y ++ ++++ L+
Sbjct: 159 VYLSLKAEL-----DREGRTSWLTE--EMNILEARETY--DMHPDDAWQR---LKMRLRK 206
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
Q+LA++ + WR+ ARA + VL + + EIA+Q P A L RL
Sbjct: 207 PQELAILKYVAAWREREARARNVPRSRVLKDDAIYEIAQQQPKDAEALGRL 257
>gi|372269240|ref|ZP_09505288.1| ribonuclease D [Alteromonas sp. S89]
Length = 386
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 18/230 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ +++D L + V L+E+ +D K+MH D+ L+R G+ +F
Sbjct: 63 VQVGDGKHCYLIDNLAIDNLVP--LKELLQDTRVVKIMHSCSEDLETLERLLGVIPDPIF 120
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ + + L Y + ++ K +DW RPL D YA D +L
Sbjct: 121 DTQIAAAISGMG-AGLGYAATVSQLLQIDLPKSETRSDWLQRPLSDSQKNYAALDVVWLP 179
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG- 177
+Y I+ +L +E + D ++ C + E L+ ++GA
Sbjct: 180 LVYGILVKRL----REQDRLDW--------LWEDCTAMVAAARQPEPPALYYRKVKGAWR 227
Query: 178 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
L QLAV+ LC WR+ ARA D +++ + +A+ +P A L
Sbjct: 228 LRQNQLAVLQDLCAWREREARARDMPRNHLIKENVCMALAQHMPKYLATL 277
>gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
gi|384041701|ref|YP_005480445.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
gi|384050216|ref|YP_005477279.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
gi|384053326|ref|YP_005486420.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
gi|384056558|ref|YP_005489225.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
gi|384059199|ref|YP_005498327.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
gi|384062493|ref|YP_005483135.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
gi|384118569|ref|YP_005501193.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
Length = 217
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 23 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK--LERNSLEYLL 80
P L+ V DP+ K+MH A D+ LQ GI + + T A+R+++ +R+ L L
Sbjct: 73 PNLKRVLADPSITKIMHFARFDVAILQHALGITVSPVVCTKIAARLVRTFTDRHGLAALC 132
Query: 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 128
GV +K+ Q +DW + L E L YA D YL ++D M L
Sbjct: 133 RDMLGVELSKQQQTSDWGAKELKPEQLAYAASDVLYLHALWDKMSALL 180
>gi|395779818|ref|ZP_10460287.1| ribonuclease D [Bartonella washoensis 085-0475]
gi|395420193|gb|EJF86478.1| ribonuclease D [Bartonella washoensis 085-0475]
Length = 384
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ ++D + + + P+ ++ D KV H A +DI + GI +F
Sbjct: 43 IQLASPDTTVLIDPIASDIDLKPFF-DLMADKKIVKVFHAARQDIETIYHLGGIIPYPLF 101
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A + + S + ++ G + +K + DW RPL ++ L YA D YL
Sbjct: 102 DTQIAGSICGFGDSISYDQIVQRCTGHHIDKSSRFTDWSCRPLSEKQLLYALADVTYLRD 161
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
IY ++K +L + D + ++YD + E+ + L
Sbjct: 162 IYLLLKKQLEKNKRTHWMDDEIAILLNPKTYD----------MPEDEAWKKVKGKVKKL- 210
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
++LA++ + WR+ AR + +++ + LIEIA Q PT + L RL
Sbjct: 211 -RELAILQKIAAWREREARKHNVPRRHIMKDEHLIEIAIQQPTDESALNRL 260
>gi|118463563|ref|YP_882753.1| ribonuclease D [Mycobacterium avium 104]
gi|118164850|gb|ABK65747.1| ribonuclease D [Mycobacterium avium 104]
Length = 428
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
++H AD+D+ L + G+ ++DT A R+ ER +L ++ G K + AD
Sbjct: 107 ILHSADQDLPCLA-EVGMRPPALYDTELAGRLAGFERVNLATMVERLLGFGLAKGHGAAD 165
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP E L YA D L+ + + L+ K T+ + +D R+
Sbjct: 166 WSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGK---------TDWAAQEFDYLREA 216
Query: 157 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 213
KE + + G+ + + LA V L RD IA+ D + +LP+ +
Sbjct: 217 GSKEPGPAARRDRWRRTSGIHRV-RDQRGLAAVRELWLTRDRIAQRRDIAPRRILPDSAI 275
Query: 214 IEIAKQLPTTAAKL 227
IE A PTT +L
Sbjct: 276 IEAALANPTTIEEL 289
>gi|268589713|ref|ZP_06123934.1| ribonuclease D [Providencia rettgeri DSM 1131]
gi|291314943|gb|EFE55396.1| ribonuclease D [Providencia rettgeri DSM 1131]
Length = 373
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 14/221 (6%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 70
++D L L P+ + + +P + K +H D+ DF M DT + L
Sbjct: 54 LIDPL-LMTDFSPF-KALLTNPEQLKFLHAGSEDLEVFMHDFDCVPEPMIDTQVVAAFLG 111
Query: 71 LERNS-LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+ L+ G+ +K DW RPL ++ YA D YLL + +I+ K++
Sbjct: 112 YPISCGFASLVAEHLGIELDKSESRTDWLARPLSEKQCDYAAADVLYLLPLAEILMEKVT 171
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
+ D V +R +K L E +Y++I+ L +QLA + L
Sbjct: 172 EAGYLEDAKDECQRVVARR---------QKALKPEKAYMNIHN--AWQLRDEQLACLQLL 220
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
EWR A+A D + +V+ L ++A+ LP++ +L L
Sbjct: 221 AEWRLNQAKARDMAVNFVVKEEHLWKVARYLPSSLGELDAL 261
>gi|315123522|ref|YP_004065528.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
SM9913]
gi|315017282|gb|ADT70619.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
SM9913]
Length = 376
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 22/210 (10%)
Query: 27 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 84
++ KDP KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 68 QILKDPKVLKVLHSPSEDIEVFQKYAGFVPYPLFDTQFALQLLG-EGNCMGFALMVKTLL 126
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 144
+ +K +W RPL + L YA DT++LL ++++ + S+ K ++ D + E
Sbjct: 127 NIEIDKSESRTNWLQRPLTQKQLEYAAADTYHLLPCFELI---IDSI-KAADLFDIVINE 182
Query: 145 ----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
KR++ + +L KE+ +N++ L +LAV+ L WR A
Sbjct: 183 SELVANKRAFQIPDELLYKEI--KNAW---------QLKPHELAVLKELAVWRRNKAIRK 231
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ + +VL + EIAK+ P++ LR++
Sbjct: 232 NLALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1]
gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1]
Length = 399
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 155
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALA 215
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAKWRQNVAIERDLA 263
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG]
gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG]
Length = 401
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 155
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELILA 215
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 263
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|296394326|ref|YP_003659210.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985]
gi|296181473|gb|ADG98379.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985]
Length = 470
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 37 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 96
V+H AD+D+ L + G+ +FDT R+ ER L L+ GV K + AD
Sbjct: 117 VLHAADQDLPCLA-ELGLRPAKLFDTELGGRIAGFERVGLAALVEALLGVGLAKGHGAAD 175
Query: 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156
W RPLP E L YA D L+ + + + L+ K ++ + V R +
Sbjct: 176 WSQRPLPPEWLNYAALDVELLIPMREALLAVLAEQGK-TQWALEEFEHVRTRPPNPA--- 231
Query: 157 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 216
E +H + G A LAVV L R+ +A+ D + G VLP+ ++
Sbjct: 232 -NPERWRRTGRIH----EAKGRRA--LAVVRELWLAREELAKKRDIAPGRVLPDTAVVAA 284
Query: 217 AKQLP 221
A P
Sbjct: 285 ANNTP 289
>gi|381404322|ref|ZP_09929006.1| ribonuclease D [Pantoea sp. Sc1]
gi|380737521|gb|EIB98584.1| ribonuclease D [Pantoea sp. Sc1]
Length = 373
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 24/231 (10%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVL 69
++D L +R P++ + D K +H D+ V+L R FG+ M DT Q
Sbjct: 54 LIDPLNIR-DWSPFV-ALLTDTAVTKFLHAGGEDLEVFLHR-FGVLPTPMIDT-QILAAF 109
Query: 70 KLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 127
+ S + ++ HF V +K DW RPL + YA D HYLL I + +
Sbjct: 110 SGQPLSWGFAAMVAHFTQVELDKSESRTDWLARPLTERQCVYAAADVHYLLPIARQLMVN 169
Query: 128 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLA 184
+E+ N L+E C L ++ L S E ++ I L +QLA
Sbjct: 170 ----TEEAGNMAAALSE--------CDNLCQRRLDSLAPEEAWRDITN--AWQLRPRQLA 215
Query: 185 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 235
+ L WR +AR D + +V+ L ++A+ +P + +L L S H
Sbjct: 216 ALQRLAAWRLTLAREKDMAVNFVVREENLWKVARFMPGSLGELDHLGLSGH 266
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,227,906,172
Number of Sequences: 23463169
Number of extensions: 448109633
Number of successful extensions: 1099793
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 2102
Number of HSP's that attempted gapping in prelim test: 1093798
Number of HSP's gapped (non-prelim): 4966
length of query: 651
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 502
effective length of database: 8,863,183,186
effective search space: 4449317959372
effective search space used: 4449317959372
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 80 (35.4 bits)