BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006313
(651 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 151 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 209
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 210 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 269
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 270 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 326
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 327 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 367
>pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
pdb|3SAH|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
Length = 428
Score = 238 bits (608), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 154/221 (69%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 151 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 209
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML AR+DTHYLLYI
Sbjct: 210 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSAARDDTHYLLYI 269
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 270 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 326
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 327 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 367
>pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain
pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn
pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
Length = 410
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 147/271 (54%), Gaps = 23/271 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 128 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 186
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M AR DTH+LL I
Sbjct: 187 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNI 246
Query: 121 YD------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI---- 170
YD I KL+ + ES N V KR ++ + Y S Y I
Sbjct: 247 YDQLRNKLIESNKLAGVLYESRN-------VAKRRFEYSK--YRPLTPSSEVYSPIEKES 297
Query: 171 ---YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 298 PWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 357
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 258
L ++ + + ++I+++++N N
Sbjct: 358 VSLTNGVTEHVRQNAKLLANLIRDALRNIKN 388
>pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
Adolescentis
Length = 440
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 44 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 93
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 93 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 152
Query: 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 150
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 210
Query: 151 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 210
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 211 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 261
Query: 211 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 253
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 262 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 319
Query: 254 QNA 256
Q+A
Sbjct: 320 QDA 322
>pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome
Component 10
Length = 124
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 159 KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 218
K + ++ SYL +Y Q LN QQL L WRD AR +DES GYVLPN +++IA+
Sbjct: 8 KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAE 67
Query: 219 QLP 221
+LP
Sbjct: 68 ELP 70
>pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
Exoribonuclease Involved In Structured Rna Processing
Length = 375
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 18/210 (8%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVLKLERNSLEYLLHHF 83
L+ + +DP+ K +H D+ FG + DT A+ + ++ +
Sbjct: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 143
GV +K DW RPL + YA D YLL I + + E+E S
Sbjct: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMV-------ETEASGW--- 175
Query: 144 EVYKRSYDVCR--QLYEKELLS-ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
+ D CR Q+ +E+++ E+++ I L +QLA + L +WR AR
Sbjct: 176 --LPAALDECRLMQMRRQEVVAPEDAWRDITN--AWQLRTRQLACLQLLADWRLRKARER 231
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
D + +V+ L +A+ +P + +L L
Sbjct: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSL 261
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 148 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG-- 205
R+YD+ L +L + Y H+ + G +A QLA ++ + A D+ TG
Sbjct: 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIV 140
Query: 206 YVLPNRTLIEI--AKQLPTTAAKLRRLLK 232
Y TL + +Q+ T+ K RL+K
Sbjct: 141 YFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 148 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG-- 205
R+YD+ L +L + Y H+ + G +A QLA ++ + A D+ TG
Sbjct: 72 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIV 131
Query: 206 YVLPNRTLIEI--AKQLPTTAAKLRRLLK 232
Y TL + +Q+ T+ K RL+K
Sbjct: 132 YFTDVSTLYDDRGVQQIMDTSDKTGRLIK 160
>pdb|1K42|A Chain A, The Solution Structure Of The Cbm4-2 Carbohydrate Binding
Module From A Thermostable Rhodothermus Marinus
Xylanase.
pdb|1K45|A Chain A, The Solution Structure Of The Cbm4-2 Carbohydrate Binding
Module From A Thermostable Rhodothermus Marinus Xylanase
Length = 168
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 297 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIA 349
E V+G D VG+++ +PP + L+ G+ V + NG+G+ EA A
Sbjct: 23 EGVEGWDLNVGSSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGNNPWDIEATA 75
>pdb|3JXS|A Chain A, Crystal Structure Of Xg34, An Evolved Xyloglucan Binding
Cbm
pdb|3JXS|B Chain B, Crystal Structure Of Xg34, An Evolved Xyloglucan Binding
Cbm
pdb|3JXS|C Chain C, Crystal Structure Of Xg34, An Evolved Xyloglucan Binding
Cbm
Length = 174
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 297 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGS 340
E V+G D VG+++ +PP + L+ G+ V + NG+G+
Sbjct: 23 EGVEGWDLNVGSSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGN 66
>pdb|2Y6J|A Chain A, X-2 Engineered Mutated Cbm4-2 Carbohydrate Binding Module
From A Thermostable Rhodothermus Marinus Xylanase
pdb|2Y6K|A Chain A, Xylotetraose Bound To X-2 Engineered Mutated Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
pdb|2Y6L|A Chain A, Xylopentaose Binding X-2 Engineered Mutated Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
Length = 167
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 297 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGS 340
E V+G D VG+++ +PP + L+ G+ V + NG+G+
Sbjct: 23 EGVEGWDLNVGSSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGN 66
>pdb|2Y64|A Chain A, Xylopentaose Binding Mutated (X-2 L110f) Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
pdb|2Y6G|A Chain A, Cellopentaose Binding Mutated (X-2 L110f) Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
pdb|2Y6H|A Chain A, X-2 L110f Cbm4-2 Carbohydrate Binding Module From A
Thermostable Rhodothermus Marinus Xylanase
Length = 167
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 297 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGS 340
E V+G D VG+++ +PP + L+ G+ V + NG+G+
Sbjct: 23 EGVEGWDLNVGSSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGN 66
>pdb|2E6L|A Chain A, Structure Of Mouse Wrn Exonuclease Domain
pdb|2E6M|A Chain A, Structure Of Mouse Werner Exonuclease Domain
Length = 208
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD-TGQASRVLKL-ERNSLEYLLHH 82
L+ + ++ + KK G + D L RDF + L + + T A+ LK E SL L+ H
Sbjct: 88 LKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKH 147
Query: 83 FCG--VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 121
G + +K + ++W PL ++ YA D + L IY
Sbjct: 148 VLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIY 188
>pdb|1F0K|A Chain A, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1F0K|B Chain B, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1NLM|A Chain A, Crystal Structure Of Murg:glcnac Complex
pdb|1NLM|B Chain B, Crystal Structure Of Murg:glcnac Complex
Length = 364
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 50/247 (20%)
Query: 164 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES---------TGYVLPNRTLI 214
E ++ I GL+G G+ A A + WR ARA ++ GYV L
Sbjct: 57 EIDFIRISGLRGKGIKALIAAPLRIFNAWRQ--ARAIMKAYKPDVVLGMGGYVSGPGGLA 114
Query: 215 EIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA------ANFEVIAQKLKE 268
+ +P + + + ++ + V+ + NA +V+A L +
Sbjct: 115 AWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQ 174
Query: 269 ERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGS 328
+R+ VLV+ S +I N TMP Q K+G
Sbjct: 175 QRLAGREGPVRVLVVGGSQGARILN--------------QTMP---------QVAAKLGD 211
Query: 329 SVAELDRNGLGS-------FAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVT 381
SV ++G GS +A G+ ++K I ++++ D+ C+S + V+
Sbjct: 212 SVTIWHQSGKGSQQSVEQAYAEAGQ---PQHKVTEFIDDMAAAYAWADVVVCRSGALTVS 268
Query: 382 EAAVQAL 388
E A L
Sbjct: 269 EIAAAGL 275
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 196 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 255
++ ADD + Y+LP + L+ + K + AA + + K+ ++R + +L+ +K ++
Sbjct: 501 LSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKMLQRAL-ELLAFLKEDLEK 559
Query: 256 AA 257
A
Sbjct: 560 LA 561
>pdb|2FJA|A Chain A, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|C Chain C, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|A Chain A, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|C Chain C, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|A Chain A, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|C Chain C, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|A Chain A, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|C Chain C, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 643
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 196 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 255
++ ADD + Y+LP + L+ + K + AA + + K+ ++R + +L+ +K ++
Sbjct: 501 LSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKMLQRAL-ELLAFLKEDLEK 559
Query: 256 AA 257
A
Sbjct: 560 LA 561
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,658,557
Number of Sequences: 62578
Number of extensions: 773531
Number of successful extensions: 1428
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1399
Number of HSP's gapped (non-prelim): 37
length of query: 651
length of database: 14,973,337
effective HSP length: 105
effective length of query: 546
effective length of database: 8,402,647
effective search space: 4587845262
effective search space used: 4587845262
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)