BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006313
(651 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 448 YDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 246 bits (629), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTRTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMF
Sbjct: 329 MQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMF 387
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYI
Sbjct: 388 DTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYI 447
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 180
YD M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 448 YDKMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 193 bits (490), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 154/263 (58%), Gaps = 21/263 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQIS R +D++VDTL+LR ++ L VF +P KV HGA DI+WLQRDFG+Y+ N+F
Sbjct: 259 MQISNREKDWIVDTLELREELEA-LNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLF 317
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT A++VL E + L +LL +C +A+K YQ ADWR+RPLP EML+YA+ DTHYLLYI
Sbjct: 318 DTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYI 377
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 177
+D ++ +L S K +E + + V+ S + + YE E Y IYGL G
Sbjct: 378 WDHLRNELIS--KSAERKENLMQSVFNSSKQISLRKYELE-----PYDPIYGLGTDGWRN 430
Query: 178 ----------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
+ + L + L +WRD +AR +DES YVLPNR LI IA P AA +
Sbjct: 431 VLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADV 490
Query: 228 RRLLKSKHSYIERYMGPVLSIIK 250
+ K Y+ ++ +++
Sbjct: 491 FSISKQLTPIARMYVEDIVKVVQ 513
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 167/309 (54%), Gaps = 32/309 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
MQISTR D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +F
Sbjct: 254 MQISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLF 312
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 313 DTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNI 372
Query: 121 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSY 167
YD ++ KL K L V S +V ++ +E E+ S + S
Sbjct: 373 YDQLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESP 424
Query: 168 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 425 WKILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGV 483
Query: 228 RRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDT 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T
Sbjct: 484 VSLTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLET 536
Query: 286 SSNLKIPNV 294
S +I +V
Sbjct: 537 ISVPQIRDV 545
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 17/223 (7%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ ++++D L +R GP+ E+ +DP KV+H D+ R G +F
Sbjct: 49 VQVGDGRREWLIDPLLVR-DWGPF-AELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLF 106
Query: 61 DTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 118
DT A+ L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L
Sbjct: 107 DTQLAAAYLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLA 165
Query: 119 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 178
+Y + +LS E L + + ++CR+ +E E G L
Sbjct: 166 QVYLALDARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRL 213
Query: 179 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 214 RPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 256
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 28 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 86
+ +P K++H D++ ++F M DT +R L L ++ L L + V
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 155
Query: 87 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 143
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 215
Query: 144 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 203
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 263
Query: 204 TGYVLPNRTLIEIAKQLPTTAAKL 227
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM
13023 / NCIMB 13966) GN=rnd PE=3 SV=2
Length = 384
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 28/235 (11%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ +++ +VD L + + P+ + K+ KV H A +DI + +F
Sbjct: 42 IQLAGPSDELIVDPLAPDLDLAPFY-ALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLF 100
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V + E L+ G + +K + DW RPL D+ L+YA D YL
Sbjct: 101 DTQVAAMVCGFGDSVGYETLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRT 160
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE------LLSENSYLHIYGL 173
IY+++ +L+ KR++ V ++ + + EN++ +
Sbjct: 161 IYEVLAKRLTHT---------------KRAHWVAEEMAVLQDPETYAMRPENAWKRV--- 202
Query: 174 QGAGLNAQQ-LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
A Q+ LAV+ + WR+ A+ D V+ + L EIA Q+P T + L
Sbjct: 203 -KARFRGQRGLAVLVEVAAWRERQAQERDLPRSRVMKDDALAEIATQIPRTISDL 256
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=rnd PE=3 SV=2
Length = 399
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 20/234 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA--DRDIVW-LQRDFGIYLC 57
+Q+++ E VD L + + P L E+ DP KV H A D +IVW L + I
Sbjct: 42 VQLASADEAVAVDALASGLDLAP-LFELMADPAVVKVFHAARQDLEIVWNLAK---IIPA 97
Query: 58 NMFDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 116
+FDT A+ V ++ S L+ C V+ +K + DW RPL + YA D Y
Sbjct: 98 PLFDTQVAAMVCGFGDQVSYGDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTY 157
Query: 117 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
L IY I++ KL + SD +Y E +N++ +
Sbjct: 158 LRDIYAILQDKLKETGRLGWLSDEMALLTSPATY---------EQHPDNAWER---FRNR 205
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ L V+ + WR+ A+A D +L + LIE+A P +A L L
Sbjct: 206 VRKPRDLGVLMEVAGWREAEAQARDVPRSRILKDDVLIELALAAPRSADALGNL 259
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 14/231 (6%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+++ ++D + + + P+ ++ + KV H A +DI + G+ +F
Sbjct: 65 IQLASPDTTVLIDPISQDIDLKPFF-DLMVNKKIVKVFHAARQDIETIYHLGGVIPSPLF 123
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A + + S + ++ G +K + DW RPL ++ L YA D YL
Sbjct: 124 DTQIAGSICGFGDSISYDQIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRD 183
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y ++K +L + D + ++YD + EN ++G
Sbjct: 184 VYLLLKKQLEKNKRTHWMDDEIAVLLEPKTYD----------MPENEAWK--KVKGKIKK 231
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
++LAV+ + WR+ AR + +++ + LIEIA Q P A L+RL
Sbjct: 232 PRELAVLQKIAAWRERKARQYNIPRRHIIKDECLIEIAIQQPKDEADLKRL 282
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 14/218 (6%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 70
V+DTL + + P + E+ DP KV H +DI FG MFDT A+ V
Sbjct: 63 VIDTLAPELDLAP-VGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAG 121
Query: 71 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
++ + L+ G + +K ++ +DW RPL + YA D +L +Y+ ++ +L
Sbjct: 122 FGDQVGYDTLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRL- 180
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
E E ++E D + + E L+ N + L ++ +
Sbjct: 181 ----EKEGRLAWVSEEMAVLNDPATYRTDPVTMWER-------LRPRTNNRRYLGLLRAI 229
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
C WR+V A+ + ++ + +L+EIA P A L
Sbjct: 230 CAWREVEAQRLNIPRQRLIKDESLLEIAATSPADAESL 267
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 101/240 (42%), Gaps = 14/240 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ + E VVDTL + + P L + DP KV H A +D+ FG +F
Sbjct: 53 VQLAGQDEVVVVDTLAPGIDLAP-LGVLLDDPEVVKVFHAARQDLEIFLYLFGHLPAALF 111
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V ++ + L+ G + +K ++ +DW RPL + + YA D +L
Sbjct: 112 DTQVAAMVAGFGDQVGYDNLVASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRT 171
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
+Y ++ +L E E + D + E L E ++ N
Sbjct: 172 VYQLLLERL-----EREGRLDWVASDLAVLSDPATFRPDPETLWER-------MRPRTSN 219
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239
+ L V+ + WR+ A+ + +L + +L+EIA P L R+ + E
Sbjct: 220 RRMLGVLRAITAWREREAQRVNVPRQRLLKDESLLEIAATAPADVDALARIRGVSRGFAE 279
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI +V+D +++ + P LR++ + + V H D+ +L R +GI+ F
Sbjct: 39 VQIGDEENTYVIDLYEIQ-DIEP-LRKLINE--RGIVGHNLKFDLKYLYR-YGIFPSATF 93
Query: 61 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 120
DT AS +L ER+SL +++ + G + +K YQ +DW L D L+YA D L +
Sbjct: 94 DTMIASYLLGYERHSLNHIVSNLLGYSMDKSYQTSDWGASVLSDAQLKYAANDVIVLREL 153
Query: 121 YDIMKIKLSSMPKE 134
+ M+ L+ + E
Sbjct: 154 FPKMRDMLNELDAE 167
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 20/221 (9%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL- 69
++D L + V P+ ++ DP K +H D+ FG+ DT L
Sbjct: 54 LIDPLSITVW-QPFC-DLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLG 111
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
K L+ + V +K DW RPL ++ +YA D +YLL M I+L
Sbjct: 112 KPLSYGFAALVADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLL----PMAIRLV 167
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKE---LLSENSYLHIYGLQGAGLNAQQLAVV 186
+T ++ + D CRQL +++ L E +Y I L + LA +
Sbjct: 168 --------EETTSAGWWEAALDECRQLCQRKQDVLAPEQAYREIGN--AWQLKGRHLACL 217
Query: 187 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
L +WR AR D + +++ L ++A+ LP + +L
Sbjct: 218 QKLADWRLRKARERDSAVNFIVREEHLGQVARYLPGSLGEL 258
>sp|A5G127|RND_ACICJ Ribonuclease D OS=Acidiphilium cryptum (strain JF-5) GN=rnd PE=3
SV=1
Length = 392
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 26/237 (10%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q+ + V+D + + P L +F +P KV H +DI FG +F
Sbjct: 51 VQLGGANDVAVIDAQAEGLDLAP-LGALFANPAVTKVFHACRQDIEIFLLKFGAVPAPLF 109
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ V ++ + L+ G +K ++ +DW RPL + YA D +L
Sbjct: 110 DTQVAAMVAGFGDQVGYDTLVSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRP 169
Query: 120 IYDIMKIKLSS------MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL 173
+Y+ ++ +L+ + +E+ P T Y E E+++ L
Sbjct: 170 VYEGLRARLTREGRLDWVAEEAAVLADPAT-------------YRTE--PEDAWRR---L 211
Query: 174 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ G N +QLA+V + WR+ A + ++ + + E+A P A L R+
Sbjct: 212 KLRGGNRRQLALVKAIAAWREREAMRVNVPRQRIVRDEQIPELAALAPADAEGLTRV 268
>sp|P09155|RND_ECOLI Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1
Length = 375
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 18/210 (8%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVLKLERNSLEYLLHHF 83
L+ + +DP+ K +H D+ FG + DT A+ + ++ +
Sbjct: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125
Query: 84 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 143
GV +K DW RPL + YA D YLL I + + E+E S
Sbjct: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMV-------ETEASGW--- 175
Query: 144 EVYKRSYDVCR--QLYEKELLS-ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 200
+ D CR Q+ +E+++ E+++ I L +QLA + L +WR AR
Sbjct: 176 --LPAALDECRLMQMRRQEVVAPEDAWRDITN--AWQLRTRQLACLQLLADWRLRKARER 231
Query: 201 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
D + +V+ L +A+ +P + +L L
Sbjct: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSL 261
>sp|Q28RA7|RND_JANSC Ribonuclease D OS=Jannaschia sp. (strain CCS1) GN=rnd PE=3 SV=1
Length = 386
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 21/232 (9%)
Query: 7 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 66
T+ ++D L + + P L E+F++ KV H A +D+ + G+ +FDT A+
Sbjct: 53 TDAVLIDPLAEGLSLEP-LYELFRNVNVVKVFHAARQDLEIFFVEGGLVPTPLFDTQVAA 111
Query: 67 RVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 125
V ++ E L+ N +K + DW RPL D YA D YL IY+ +
Sbjct: 112 MVCGFGDQVGYETLVRRIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLS 171
Query: 126 IKLSSMPKES--ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 183
+L+ + E LT D EN++ + +G + +
Sbjct: 172 AELARTDRTHWLEEELAQLTNADAYVVD-----------PENAWKRLKLRSNSG---RVV 217
Query: 184 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL---RRLLK 232
A+ L +R+ A+ + VL + L+E+A P T A L R LL+
Sbjct: 218 AIAQQLAAFRETYAQEKNVPRNRVLKDDALLELAGTKPKTVADLGKSRLLLR 269
>sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG
23827 / z3032) GN=rnd PE=3 SV=2
Length = 369
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 20/221 (9%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVL 69
++D L + + P+ + + +D K +H D+ Q FG+ DT AS V
Sbjct: 50 LIDPLTI-TEWAPF-QALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVG 107
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
L+ H GV +K DW RPL + YA D YLL I KL
Sbjct: 108 HPLSCGFATLVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAH----KLM 163
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEK--ELLS-ENSYLHIYGLQGAGLNAQQLAVV 186
+E+ + E CR + ++ E+L + ++ I L +QLA +
Sbjct: 164 EQVREAGWLTAAINE--------CRLMTQRRGEVLDPDEAWREITN--AWQLRPRQLACL 213
Query: 187 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
L WR AR D + +V+ L ++A+ +P + +L
Sbjct: 214 KLLAGWRLRKARERDMAVNFVVREENLWKVARHMPGSLGEL 254
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 20/234 (8%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI--VWLQRDFGIYLCN 58
+Q+++ E VVD L + + P+ ++ + KV H A +DI VW Q GI
Sbjct: 42 VQMASPDEAVVVDALAEGIDLKPFF-DLMSNERVLKVFHAARQDIEIVWHQA--GIIPHP 98
Query: 59 MFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 116
+FDT A+ VL +S+ Y L+ G +K ++ DW RPL + L YA D +
Sbjct: 99 IFDTQVAAMVLGYG-DSIAYDALVERVNGHRPDKTHRFTDWSRRPLTKDQLEYAVADVTH 157
Query: 117 LLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 176
L ++ + L + S+ ++YD + E E L+
Sbjct: 158 LRDVFAALDADLKKRGRGDWVSEEMEVLTSPKTYD-----FHPERAWER-------LKTR 205
Query: 177 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
+ LAV+ + WR+ A++ + VL + + +IA P T +L L
Sbjct: 206 VRKPKDLAVMMEVAAWREQEAQSRNIPRSRVLKDDAVGDIAIHAPATPERLATL 259
>sp|Q6AJF4|RND_DESPS Ribonuclease D OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnd PE=3 SV=1
Length = 374
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 26/230 (11%)
Query: 1 MQISTRTED-FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 59
+QI+ E+ + +D L ++ + P L E+ D K++H A +D++ + + G N+
Sbjct: 45 IQIALSDEECYAIDPLSIK-DLSP-LGELLADRNTIKILHDAPQDLIIMSQATGATPQNI 102
Query: 60 FDTGQASRVL-KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL- 117
FDT A+ + SL L+ +K +W RPL ++ L Y+ D YL
Sbjct: 103 FDTRLAAGFAGSISTISLLQLVSEQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYLR 162
Query: 118 ----LYIYDIMKIKLSSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG 172
+ + I+ K+ S +E N + P Y D E+ Y + G
Sbjct: 163 ATRVILLSKIIGPKIKSWLQEELNLLNNPAN--YSTIAD------------ESRYKKVKG 208
Query: 173 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 222
+ L+ + + V + WR+ AR + G+V+ + L+EIA PT
Sbjct: 209 VNK--LDRKSIGVAQEIATWREQKARELNRPRGHVIKDDILLEIAAIRPT 256
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 14/221 (6%)
Query: 11 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVL 69
++D L ++ Q P++ E+ + K +H D+ F M DT A+
Sbjct: 54 LIDPLPIK-QWQPFI-ELLSNTQVVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFTG 111
Query: 70 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
+ L+ + V +K DW RPL ++ YA D YLL + + +
Sbjct: 112 RPMSCGFATLVAEYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRLVQETE 171
Query: 130 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 189
+ S+ L +RS + +L +E+ N++ L +QL + L
Sbjct: 172 EAGWTAAASNECLLLCQRRSETLAPELAYREI--TNAW---------QLRPRQLGCLQKL 220
Query: 190 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 230
EWR AR D + +V+ L ++A+ +PT+ +L L
Sbjct: 221 AEWRLRQARERDLAVNFVVREENLWQVARHMPTSLGELDSL 261
>sp|D4Z694|RND_SPHJU Ribonuclease D OS=Sphingobium japonicum (strain NBRC 101211 /
UT26S) GN=rnd PE=3 SV=2
Length = 388
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 13/228 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+Q++ E +D + + P L + + KV H +D+ + G +F
Sbjct: 45 VQVADEHEAAAIDPKAPGLDLSPLLDLMVDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLF 104
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L L E+ L+ + GV +K + DW RPL + YA D YL+
Sbjct: 105 DTQIAAMALGLGEQIGYGNLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQ 164
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
I+ M +L + + D L + +R D YE + E ++ + + A
Sbjct: 165 IFPKMLEEL----RRTGRGDW-LDQEMERISDPSN--YENK--PEEAWQRV---RIASRK 212
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 227
A L + L WR++ A+ + G ++ + TL +IA P T L
Sbjct: 213 ADVLGRLKALAAWREMEAQDKNLPRGRIVKDETLADIASHPPRTQEDL 260
>sp|Q5GZ75|RND_XANOR Ribonuclease D OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=rnd PE=3 SV=2
Length = 363
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 82
L+E KVMH A D+V + G+ +FDT Q + L + Y L+
Sbjct: 64 LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDT-QIAAALAGVGGGMGYQKLVQE 122
Query: 83 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129
G K +DW RPL L YA +D YL I+D + +L+
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLT 169
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1
Length = 388
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 96 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ 155
DW RPL + L YA D YL +Y + KL + + L +Y+ +
Sbjct: 158 DWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDR--------LGWLYEEG----ER 205
Query: 156 LYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 212
+ E L + + +YL + L QLA + L +WR A A D + G+V+ +
Sbjct: 206 MTEGRLATPDMDTAYLRVKN--AFQLTEHQLAYLKVLAKWRLEKALARDLALGFVIKDHG 263
Query: 213 LIEIAKQLPTTAAKLRRL 230
LI +AK+ P + L +L
Sbjct: 264 LIALAKKQPKSMGDLLKL 281
>sp|Q5NPM2|RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=rnd PE=3 SV=1
Length = 390
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 13/222 (5%)
Query: 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 60
+QI+ E +D L + + P + + KV H +D+ + G +F
Sbjct: 45 IQIADDKEAAAIDPLAPGLDMTPLTDLLVNNEDILKVFHAGGQDLEIILHHTGKMPFPLF 104
Query: 61 DTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 119
DT A+ L + E+ L+ + + +K + DW RPL L YA D +L
Sbjct: 105 DTQIAAMALGVGEQVGYSNLVERYLSIKLDKGARFTDWSHRPLDRRQLDYAIADVTHLAT 164
Query: 120 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 179
++ ++ +L + L + +R D + + + E S+L I +
Sbjct: 165 LFPMLLKEL-----RDKGRGAWLDQEMERLADPSQYIND----PEKSWLRI---RMPNRK 212
Query: 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 221
A L + L WR++ A+ + G + + TL ++A P
Sbjct: 213 ADILGRLKALAAWREIEAQNRNIPRGRIAKDETLADLAIHPP 254
>sp|Q2JB35|LIPB_FRASC Octanoyltransferase OS=Frankia sp. (strain CcI3) GN=lipB PE=3 SV=1
Length = 221
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 296 RESVDGVDALVGTTMPHPPAYTQLKQEPPK------VGSSVAELDRNGLGSFAHPGEAIA 349
RE +DGV + HPP YT K+ PP+ +G V E +R GL ++ PG+ +
Sbjct: 9 RERIDGVRPDTLWFLSHPPVYTVGKRTPPEHRPLAGLGIPVHETNRGGLLTYHAPGQLVG 68
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527
PE=3 SV=1
Length = 719
Score = 36.2 bits (82), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 131
G +K Q ++W RPL E LRYA D LL IYD ++ +L+ +
Sbjct: 585 GKKLDKSNQFSNWAQRPLRKEQLRYAALDAFCLLEIYDAIEKQLTHI 631
>sp|A1SVE6|RND_PSYIN Ribonuclease D OS=Psychromonas ingrahamii (strain 37) GN=rnd PE=3
SV=1
Length = 369
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 34 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKE 91
K ++H + D+ ++ G +FDT A L + SL Y ++ V +K
Sbjct: 72 KNIILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGA-SLGYAKMVETLEAVIVDKG 130
Query: 92 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT-PLTEVYKRSY 150
DW RPL ++ + YA D YL + L + ++ EN P E
Sbjct: 131 ESRTDWCARPLSEKQINYAGVDVLYL-------QPCLEKLQQQLENKKMFPFFE------ 177
Query: 151 DVCRQLYEKELLSEN---SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 207
C+ + ++++ ++ +Y + L L+ Q LA++ L +WR + A+ + + +V
Sbjct: 178 QECQSVLAQKMVKQDPDKAYKLLNNL--FKLDRQGLAIIKALAKWRLLTAQERNLALNFV 235
Query: 208 LPNRTLIEIAKQLPTT 223
+ L +A PT+
Sbjct: 236 VKADHLWLLAYYQPTS 251
>sp|P74933|DPO1_TREPA DNA polymerase I OS=Treponema pallidum (strain Nichols) GN=polA
PE=3 SV=2
Length = 997
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 25 LREVFKDPTKKKVMHGADRDIVWLQRDFGIY---LCNMFDTGQASRVLKLERNS--LEYL 79
LR ++ D T VMH D + R G++ CN+FDT A+ +L +R + ++ L
Sbjct: 478 LRRLWNDETLTLVMHNGKFDYHVMHRA-GVFEHCACNIFDTMVAAWLLDPDRGTYGMDVL 536
Query: 80 LHHFCGVNA--NKEYQNADWRVRPLPDEM-LRYAREDTHYLLYIYDIMKIKL--SSMPKE 134
F + +E +P E +RYA ED +Y +K++L + +
Sbjct: 537 AASFFQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSV 596
Query: 135 SENSDTPLTEVYKRSYDV 152
E + PL + R +V
Sbjct: 597 FETIEMPLLPILARMEEV 614
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,324,786
Number of Sequences: 539616
Number of extensions: 10853033
Number of successful extensions: 27671
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 27471
Number of HSP's gapped (non-prelim): 261
length of query: 651
length of database: 191,569,459
effective HSP length: 124
effective length of query: 527
effective length of database: 124,657,075
effective search space: 65694278525
effective search space used: 65694278525
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)