Query 006313
Match_columns 651
No_of_seqs 286 out of 1850
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 21:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 2.8E-44 9.5E-49 389.9 23.7 261 1-265 151-411 (428)
2 2hbj_A Exosome complex exonucl 100.0 6.7E-42 2.3E-46 369.1 20.4 245 1-256 128-386 (410)
3 1yt3_A Ribonuclease D, RNAse D 100.0 8.3E-40 2.8E-44 347.5 26.6 242 1-256 44-286 (375)
4 3cym_A Uncharacterized protein 100.0 4.6E-37 1.6E-41 334.2 16.9 243 1-257 60-327 (440)
5 1vk0_A Hypothetical protein; h 99.9 1.7E-22 5.7E-27 200.1 9.8 124 1-126 76-205 (206)
6 2e6m_A Werner syndrome ATP-dep 99.9 6.5E-22 2.2E-26 192.7 11.1 132 1-133 64-200 (208)
7 1wud_A ATP-dependent DNA helic 99.6 1.9E-15 6.6E-20 131.1 6.8 75 180-254 10-84 (89)
8 2rhf_A DNA helicase RECQ; HRDC 99.6 7.1E-15 2.4E-19 123.9 8.3 72 182-253 4-75 (77)
9 2kv2_A Bloom syndrome protein; 99.5 3.5E-14 1.2E-18 122.1 9.1 74 180-253 4-77 (85)
10 2rrd_A BLM HRDC domain, HRDC d 99.5 4.7E-14 1.6E-18 125.5 9.4 74 180-253 19-92 (101)
11 3pv8_A DNA polymerase I; DNA p 99.5 4.2E-14 1.4E-18 159.2 9.1 129 1-132 51-185 (592)
12 2e1f_A Werner syndrome ATP-dep 99.4 2E-13 6.8E-18 121.9 8.5 73 180-253 12-84 (103)
13 2dgz_A Werner syndrome protein 99.4 2.2E-13 7.7E-18 123.5 8.2 72 181-253 20-91 (113)
14 2kfn_A Klenow fragment of DNA 99.3 4.8E-12 1.7E-16 142.5 12.2 128 1-130 48-195 (605)
15 1x9m_A DNA polymerase; DNA plo 99.1 3.1E-11 1.1E-15 138.1 4.6 128 1-132 21-187 (698)
16 4dfk_A DNA polymerase I, therm 98.7 2.8E-08 9.7E-13 111.0 10.0 97 1-128 32-128 (540)
17 1bgx_T TAQ DNA polymerase; DNA 97.4 0.00021 7.2E-09 83.7 7.8 82 23-129 340-421 (832)
18 3v9w_A Ribonuclease T; DEDD nu 96.8 0.0017 5.7E-08 64.0 6.4 86 32-133 133-226 (235)
19 1d8b_A SGS1 RECQ helicase; fiv 96.1 0.019 6.3E-07 49.3 8.0 67 184-250 7-75 (81)
20 2f96_A Ribonuclease T; RNAse, 94.5 0.085 2.9E-06 51.5 8.1 86 33-134 126-219 (224)
21 1y97_A Three prime repair exon 93.9 0.2 6.8E-06 49.0 9.2 91 23-129 101-211 (238)
22 3mxm_B Three prime repair exon 93.3 0.11 3.6E-06 52.0 6.1 91 23-129 106-216 (242)
23 2p1j_A POLIII, DNA polymerase 92.4 0.25 8.7E-06 46.8 7.1 87 24-129 85-177 (186)
24 1wlj_A Interferon stimulated g 92.4 0.35 1.2E-05 46.0 8.2 93 23-132 75-173 (189)
25 3u3y_B Three prime repair exon 90.8 0.63 2.1E-05 48.8 8.7 91 23-129 106-216 (314)
26 2gui_A DNA polymerase III epsi 90.8 0.88 3E-05 43.0 9.1 86 24-126 88-183 (194)
27 1zbh_A 3'-5' exonuclease ERI1; 78.7 5.8 0.0002 40.5 8.6 89 24-128 159-263 (299)
28 1w0h_A 3'-5' exonuclease ERI1; 78.0 7.7 0.00026 36.6 8.7 89 24-128 91-195 (204)
29 3cym_A Uncharacterized protein 74.5 7.6 0.00026 42.1 8.5 71 180-250 360-433 (440)
30 1zbu_A ERI-1 homolog, 3'-5' ex 73.9 8.3 0.00028 40.6 8.4 89 24-128 209-313 (349)
31 2qxf_A Exodeoxyribonuclease I; 69.2 11 0.00039 41.4 8.5 86 24-126 87-199 (482)
32 1yt3_A Ribonuclease D, RNAse D 49.5 7 0.00024 41.1 2.3 69 180-250 301-371 (375)
33 3d45_A Poly(A)-specific ribonu 33.5 47 0.0016 36.6 5.8 102 26-130 269-394 (507)
34 3ikm_A DNA polymerase subunit 32.8 42 0.0014 40.7 5.5 97 33-130 194-349 (1172)
35 4gmj_B CCR4-NOT transcription 31.6 83 0.0028 32.4 6.9 84 30-130 147-247 (285)
36 2a1r_A Poly(A)-specific ribonu 31.0 61 0.0021 35.0 6.1 106 25-130 273-399 (430)
37 3cg7_A CRN-4, cell death-relat 30.0 27 0.00094 35.8 3.0 86 24-127 101-208 (308)
38 1go3_F DNA-directed RNA polyme 27.1 37 0.0013 30.0 2.9 42 208-251 64-105 (107)
39 1noy_A Protein (DNA polymerase 26.1 60 0.002 34.3 4.8 63 59-123 267-334 (388)
40 1qht_A Protein (DNA polymerase 25.6 1E+02 0.0036 35.6 7.1 101 24-125 193-327 (775)
41 2xri_A ERI1 exoribonuclease 3; 23.0 98 0.0033 29.8 5.3 84 24-126 110-212 (224)
42 3ayh_A DNA-directed RNA polyme 22.1 1.2E+02 0.0039 27.8 5.3 48 205-252 86-134 (136)
43 1eca_A Erythrocruorin (AQUO Me 21.2 1.6E+02 0.0056 26.1 6.1 63 210-272 21-89 (136)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=2.8e-44 Score=389.90 Aligned_cols=261 Identities=45% Similarity=0.768 Sum_probs=234.1
Q ss_pred CeeeeCCccEEEecCCccchhhHHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcCceehHHHHHHHhCCCCCcHHHHH
Q 006313 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 80 (651)
Q Consensus 1 IQIAT~~~~~LID~laL~~dL~~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~nlFDTqLAA~lLg~~~~gL~~LV 80 (651)
|||++.+.+|+||++.++.++ ..|+++|+|++|.||+|++++|+.+|++.+|+.+.++|||++|+|+|+++++||+.|+
T Consensus 151 IQLa~~~~~~lidpl~l~~~l-~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~~~gL~~Lv 229 (428)
T 3saf_A 151 MQISTRTEDFIIDTLELRSDM-YILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLL 229 (428)
T ss_dssp EEEECSSCEEEEETTTTGGGG-GGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCSCCSHHHHH
T ss_pred EEEEeCCcEEEEEeccchhhH-HHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCCCCCHHHHH
Confidence 799999999999999986455 4699999999999999999999999988999999999999999999999889999999
Q ss_pred HHHcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhhh
Q 006313 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 160 (651)
Q Consensus 81 e~yLGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e~Gr~~e~~~~wL~Ev~k~s~e~~l~ly~ke 160 (651)
++|||++++|..+++||..|||+.+|+.|||.||+|++.||+.|..+|.+.|+. ...|+..++..+...|.+.|.++
T Consensus 230 ~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~ 306 (428)
T 3saf_A 230 KLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNG---QPVQLQVVWQRSRDICLKKFIKP 306 (428)
T ss_dssp HHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTS---CSHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cccHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999988742 13588888877777777666554
Q ss_pred ccChhHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHHHHhhhCCChhHHHH
Q 006313 161 LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 240 (651)
Q Consensus 161 ~~~e~~y~ri~g~~~~~L~~~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~eeL~~i~G~~~~~v~r 240 (651)
..+...|.++++...+.++++|+++|++|+.||+++|+++|+|+++||+|++|++||+.+|+|..+|.+|.|++.+.+++
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~ 386 (428)
T 3saf_A 307 IFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQ 386 (428)
T ss_dssp CCCTTGGGHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHH
T ss_pred CCCcccHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHH
Confidence 45556677665433358999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccHHHHHHH
Q 006313 241 YMGPVLSIIKNSMQNAANFEVIAQK 265 (651)
Q Consensus 241 ~G~eIL~iI~~Ale~~~~~e~~~~~ 265 (651)
||++||++|+++.+.|-........
T Consensus 387 ~g~~~l~~I~~a~~~p~~~~~~~~~ 411 (428)
T 3saf_A 387 QINEMHLLIQQAREMPLLKSEVAAG 411 (428)
T ss_dssp THHHHHHHHHHHHTSCCCHHHHCC-
T ss_pred HHHHHHHHHHHHHhCCCcCcchhhh
Confidence 9999999999999999876666544
No 2
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=100.00 E-value=6.7e-42 Score=369.11 Aligned_cols=245 Identities=38% Similarity=0.631 Sum_probs=218.0
Q ss_pred CeeeeCCccEEEecCCccchhhHHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcCceehHHHHHHHhCCCCCcHHHHH
Q 006313 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 80 (651)
Q Consensus 1 IQIAT~~~~~LID~laL~~dL~~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~nlFDTqLAA~lLg~~~~gL~~LV 80 (651)
|||++++.+||||++.+...+ ..|+++|+|++|.||+|++++|+.+|++++|+.+.++|||++|+|+|+++++||+.|+
T Consensus 128 iQla~~~~~ylid~l~l~~~l-~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~~~~L~~L~ 206 (410)
T 2hbj_A 128 MQISTRERDYLVDTLKLRENL-HILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLL 206 (410)
T ss_dssp EEEECSSCEEEEETTTTTTTG-GGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHH
T ss_pred EEEEECCcEEEEechhhhhhH-HHHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCCccCHHHHH
Confidence 699999999999987764334 4699999999999999999999999988899999999999999999999889999999
Q ss_pred HHHcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhh-
Q 006313 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK- 159 (651)
Q Consensus 81 e~yLGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e~Gr~~e~~~~wL~Ev~k~s~e~~l~ly~k- 159 (651)
++|||+.++|+.+++||..|||+++|+.|||.||+||+.||+.|..+|.+.| ...|+.+.|+ .+|.+.|+.
T Consensus 207 ~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g-----~~~~~~~e~~---~l~~~~~~~~ 278 (410)
T 2hbj_A 207 ENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESN-----KLAGVLYESR---NVAKRRFEYS 278 (410)
T ss_dssp HHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----CHHHHHHHHH---HHHHCEECCG
T ss_pred HHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----chHhHHHHHH---HHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999877 3467777664 345443321
Q ss_pred -------------hccChhHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHH
Q 006313 160 -------------ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 226 (651)
Q Consensus 160 -------------e~~~e~~y~ri~g~~~~~L~~~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~ee 226 (651)
...++..|+++++. +.|+++++++|++|++||+++|+++|+|+++||+|.+|++||+++|+|.++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~ 356 (410)
T 2hbj_A 279 KYRPLTPSSEVYSPIEKESPWKILMYQ--YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIG 356 (410)
T ss_dssp GGCCSSCCSSEECCCCSSSSSSSCSSC--SCCCSTTHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHH
T ss_pred cccccccccccccCCchhHHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHcCCCCcEEECHHHHHHHHHhCCCCHHH
Confidence 11234568888764 788999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCChhHHHHhHHHHHHHHHHHHhcc
Q 006313 227 LRRLLKSKHSYIERYMGPVLSIIKNSMQNA 256 (651)
Q Consensus 227 L~~i~G~~~~~v~r~G~eIL~iI~~Ale~~ 256 (651)
|.+|.|++.+.+++||++|+++|+.+++.+
T Consensus 357 L~~i~g~~~~~~~~~g~~~l~~I~~~~~~~ 386 (410)
T 2hbj_A 357 VVSLTNGVTEHVRQNAKLLANLIRDALRNI 386 (410)
T ss_dssp HHTCTTCCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999987754
No 3
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=100.00 E-value=8.3e-40 Score=347.53 Aligned_cols=242 Identities=21% Similarity=0.300 Sum_probs=215.1
Q ss_pred CeeeeCCccEEEecCCccchhhHHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcCceehHHHHHHHhCCC-CCcHHHH
Q 006313 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYL 79 (651)
Q Consensus 1 IQIAT~~~~~LID~laL~~dL~~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~nlFDTqLAA~lLg~~-~~gL~~L 79 (651)
|||++++.+||||+..+. ++ ..|+++|+|++|.||+|++++|+.+|++++|+.+.++|||++|+|+|++. .+||+.|
T Consensus 44 iqla~~~~~~lid~~~l~-~~-~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~~~~L~~L 121 (375)
T 1yt3_A 44 IQLFDGEHLALIDPLGIT-DW-SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 (375)
T ss_dssp EEEECSSCEEEECGGGCS-CC-HHHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHH
T ss_pred EEEecCCcEEEEeCCCCC-Ch-HHHHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCCChhHHHH
Confidence 699999999999987663 34 56999999999999999999999999878999999999999999999997 6999999
Q ss_pred HHHHcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 006313 80 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK 159 (651)
Q Consensus 80 Ve~yLGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e~Gr~~e~~~~wL~Ev~k~s~e~~l~ly~k 159 (651)
+++|||+.++|+.+++||..|||+++|+.||+.||+|++.||+.|..+|.+.| ...|+.+.+.. .+...+.
T Consensus 122 ~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g-----~~~l~~~e~E~---pl~~~~~- 192 (375)
T 1yt3_A 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-----WLPAALDECRL---MQMRRQE- 192 (375)
T ss_dssp HHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----CHHHHHHHHHH---HHHHHHC-
T ss_pred HHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----cHHHHHHHHHH---HHhhccc-
Confidence 99999999999999999999999999999999999999999999999999876 23564444432 2222222
Q ss_pred hccChhHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHHHHhhhCCChhHHH
Q 006313 160 ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 239 (651)
Q Consensus 160 e~~~e~~y~ri~g~~~~~L~~~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~eeL~~i~G~~~~~v~ 239 (651)
...++..|+++++. +.|+++++++|++|+.||+++|+++|+||++||+|++|++||+++|+|.++|.++ |++...++
T Consensus 193 ~~~~~~~~~~~~~~--~~l~~~~~~~~~~L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~i-g~~~~~~~ 269 (375)
T 1yt3_A 193 VVAPEDAWRDITNA--WQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIR 269 (375)
T ss_dssp CCCGGGGGGGSTTG--GGSCHHHHHHHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHH
T ss_pred CCCchHHHHhccCc--ccCCHHHHHHHHHHHHHHHHHHHHhCCCcceEECHHHHHHHHHHCCCCHHHHHhc-CCChHHHH
Confidence 23456779988774 6789999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HhHHHHHHHHHHHHhcc
Q 006313 240 RYMGPVLSIIKNSMQNA 256 (651)
Q Consensus 240 r~G~eIL~iI~~Ale~~ 256 (651)
+||+.|+++|+.+.+.|
T Consensus 270 ~~g~~~l~~i~~~~~~~ 286 (375)
T 1yt3_A 270 FHGKTLLALVEKAQTLP 286 (375)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999999998765
No 4
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=100.00 E-value=4.6e-37 Score=334.25 Aligned_cols=243 Identities=23% Similarity=0.324 Sum_probs=207.9
Q ss_pred CeeeeCC-ccEEEecCCcc---chhhHHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcCceehHHHHHHHhCCCCCcH
Q 006313 1 MQISTRT-EDFVVDTLKLR---VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSL 76 (651)
Q Consensus 1 IQIAT~~-~~~LID~laL~---~dL~~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~nlFDTqLAA~lLg~~~~gL 76 (651)
|||++.+ .+|+||++.+. .++ ..|+++|+|+ .||+|++++|+.+|+ ++|+.+.++|||++|+|+|++.++||
T Consensus 60 iQla~~~~~~~lid~l~~~~~~~~l-~~L~~lL~d~--~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~~~gL 135 (440)
T 3cym_A 60 VQFKRDGAGIGLLDPQALAAAGADW-NDFNRAVGDA--VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLKRFGL 135 (440)
T ss_dssp EEEEEETTEEEEECHHHHHHTTCCH-HHHHHHHTTC--EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCSSCSH
T ss_pred EEEEECCCcEEEEEcCCccccccCH-HHHHHHHCCC--CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCCCCCH
Confidence 6999855 48999986532 234 4699999997 699999999999995 99999999999999999999878999
Q ss_pred HHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHH
Q 006313 77 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 156 (651)
Q Consensus 77 ~~LVe~yLGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e~Gr~~e~~~~wL~Ev~k~s~e~~l~l 156 (651)
+.|++.|||+.++|+.++++|..|||+++|+.|||.||+||+.||+.|..+|.+.| ...|+.++|.. +|...
T Consensus 136 ~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g-----~~~l~~~e~~~---l~~~~ 207 (440)
T 3cym_A 136 AAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQG-----KMEWAQEEFDY---ALKEG 207 (440)
T ss_dssp HHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-----CHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----cHHHHHHHHHH---Hhccc
Confidence 99999999999999999999999999999999999999999999999999999877 34666666643 33333
Q ss_pred HhhhccChhHHHHHhcccCCCC--CHHHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHHHHhhhCCC
Q 006313 157 YEKELLSENSYLHIYGLQGAGL--NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 234 (651)
Q Consensus 157 y~ke~~~e~~y~ri~g~~~~~L--~~~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~eeL~~i~G~~ 234 (651)
+.+.......|+++++. +.+ +++|+++|++|+.||+++|+++|+|+++||+|++|++||+++|+|.++|.++.|++
T Consensus 208 ~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~ 285 (440)
T 3cym_A 208 LGPRKEHLIPWMHVSHI--TEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSIN 285 (440)
T ss_dssp SSSCCCCSSGGGCCTTG--GGGTTCHHHHHHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGG
T ss_pred cccCCCchHHHHHhccc--cccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCC
Confidence 22122334567766553 355 89999999999999999999999999999999999999999999999999998877
Q ss_pred hhHH------------------HH-hHHHHHHHHHHHHhccc
Q 006313 235 HSYI------------------ER-YMGPVLSIIKNSMQNAA 257 (651)
Q Consensus 235 ~~~v------------------~r-~G~eIL~iI~~Ale~~~ 257 (651)
...+ ++ ||+.|+++|+++.+.|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~i~~~~~~~~ 327 (440)
T 3cym_A 286 ERVRIHTDSEQDKMFERYAPIQRKIKPSMWKNIIQDALALPP 327 (440)
T ss_dssp SCCCCCCSSTHHHHHHTTHHHHTTSCHHHHHHHHHHHHTSCG
T ss_pred chheecccchhhhhhcccchhhhhhhHHHHHHHHHHHHhCCH
Confidence 6666 87 99999999999988653
No 5
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.87 E-value=1.7e-22 Score=200.09 Aligned_cols=124 Identities=18% Similarity=0.206 Sum_probs=109.9
Q ss_pred CeeeeCCccEEEecC-CccchhhHHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcCceehHH-HHHHHhCC---CCCc
Q 006313 1 MQISTRTEDFVVDTL-KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVLKL---ERNS 75 (651)
Q Consensus 1 IQIAT~~~~~LID~l-aL~~dL~~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~nlFDTq-LAA~lLg~---~~~g 75 (651)
||||+++.|+|||+. .+...+. .|+.+|+||+|+||+|++++|+..|+++||+.+.++|||+ +|+.++|. ...|
T Consensus 76 iQla~~~~~~l~~l~~~~~~~L~-~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~g 154 (206)
T 1vk0_A 76 VKLSTRNLCLFLRLPKPFHDNLK-DLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLG 154 (206)
T ss_dssp EEEECSSEEEEEECCSSCCGGGH-HHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCC
T ss_pred EEEecCCCeEEEeccccCCccHH-HHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCcc
Confidence 799999999999982 1222332 3889999999999999999999999999999999999997 88888886 2689
Q ss_pred HHHHHHHHcCCCC-CcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q 006313 76 LEYLLHHFCGVNA-NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 126 (651)
Q Consensus 76 L~~LVe~yLGv~L-dK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~ 126 (651)
|+.|++++||+.+ +|..++|||.. ||+++|+.|||.||+|++.||+.|..
T Consensus 155 L~~Lv~~~lg~~lK~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 155 TRELAHRVLWSDLGQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcCCCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999 44669999999 99999999999999999999999864
No 6
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.86 E-value=6.5e-22 Score=192.73 Aligned_cols=132 Identities=23% Similarity=0.292 Sum_probs=115.4
Q ss_pred CeeeeC-CccEEEecCCccchhhHHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcCceeh-HHHHHHHhCCC-CCcHH
Q 006313 1 MQISTR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD-TGQASRVLKLE-RNSLE 77 (651)
Q Consensus 1 IQIAT~-~~~~LID~laL~~dL~~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~nlFD-TqLAA~lLg~~-~~gL~ 77 (651)
|||++. +.+|+||+..+.. +...|+++|+|++|.||+|++++|+.+|.+++|+.+.++|| |++|+|+|++. .+||+
T Consensus 64 iqla~~~~~~~~i~~~~~~~-~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~ 142 (208)
T 2e6m_A 64 IQLCVSESKCYLFHISSMSV-FPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLN 142 (208)
T ss_dssp EEEECSSSEEEEECGGGCSS-CCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHH
T ss_pred EEEecCCCeEEEEECccccc-chHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHH
Confidence 699985 6899999887642 34579999999999999999999999998789999999999 99999999984 69999
Q ss_pred HHHHHHcCCCCCc--ccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Q 006313 78 YLLHHFCGVNANK--EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 133 (651)
Q Consensus 78 ~LVe~yLGv~LdK--~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e~Gr 133 (651)
.|+++|||..+.| ..+++||..|||+++|+.|||.||++++.||+.|..+|.+.++
T Consensus 143 ~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~ 200 (208)
T 2e6m_A 143 GLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQV 200 (208)
T ss_dssp HHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-----
T ss_pred HHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 9999999999854 5689999999999999999999999999999999999988763
No 7
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=99.57 E-value=1.9e-15 Score=131.11 Aligned_cols=75 Identities=25% Similarity=0.363 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHHHHhhhCCChhHHHHhHHHHHHHHHHHHh
Q 006313 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 254 (651)
Q Consensus 180 ~~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~eeL~~i~G~~~~~v~r~G~eIL~iI~~Ale 254 (651)
+.++++|++|+.||+++|+++|+||++||+|.+|++||+.+|+|.++|..|.|++..++++||+.||++|+.+.+
T Consensus 10 ~~~~~l~~~L~~wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~~ 84 (89)
T 1wud_A 10 NYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVD 84 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999998754
No 8
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=99.55 E-value=7.1e-15 Score=123.94 Aligned_cols=72 Identities=25% Similarity=0.266 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHHHHhhhCCChhHHHHhHHHHHHHHHHHH
Q 006313 182 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 253 (651)
Q Consensus 182 qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~eeL~~i~G~~~~~v~r~G~eIL~iI~~Al 253 (651)
+.++|++|+.||+++|+++|+||++||+|.+|++||+++|+|.++|..|.|++..++++||+.||++|+.+.
T Consensus 4 d~~l~~~L~~wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~ 75 (77)
T 2rhf_A 4 NADLSEALRELRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTVL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999999999999999999999999999999999999999999998864
No 9
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=122.14 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHHHHhhhCCChhHHHHhHHHHHHHHHHHH
Q 006313 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 253 (651)
Q Consensus 180 ~~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~eeL~~i~G~~~~~v~r~G~eIL~iI~~Al 253 (651)
+.+..+|++|+.||+++|+++|+|||+||+|.+|.+||+++|+|.++|..|.|++..++++||+.||++|+.+.
T Consensus 4 ~~~~~l~~~L~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~ 77 (85)
T 2kv2_A 4 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999874
No 10
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=4.7e-14 Score=125.53 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHHHHhhhCCChhHHHHhHHHHHHHHHHHH
Q 006313 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 253 (651)
Q Consensus 180 ~~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~eeL~~i~G~~~~~v~r~G~eIL~iI~~Al 253 (651)
..+.++|++|+.||+++|+++|+|+|+||+|.+|++||+++|+|.++|.+|.|++..++++||++||++|+.+.
T Consensus 19 e~~~~l~~~L~~wR~~~A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~~ 92 (101)
T 2rrd_A 19 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999863
No 11
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.48 E-value=4.2e-14 Score=159.24 Aligned_cols=129 Identities=16% Similarity=0.066 Sum_probs=111.5
Q ss_pred CeeeeCCccEEEecCCccchhhHHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcC-ceehHHHHHHHhCCC--CCcHH
Q 006313 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC-NMFDTGQASRVLKLE--RNSLE 77 (651)
Q Consensus 1 IQIAT~~~~~LID~laL~~dL~~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~-nlFDTqLAA~lLg~~--~~gL~ 77 (651)
|||++.+.+|+|++.... .+ ..|++||+|+++.||+|++++|+.+| ..+|+.+. .+|||++|+|+|++. .++|+
T Consensus 51 isla~~~~a~yIp~~~~~-~l-~~Lk~lLed~~i~KV~hn~K~Dl~vL-~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~ 127 (592)
T 3pv8_A 51 IAVVNEHGRFFLRPETAL-AD-PQFVAWLGDETKKKSMFDSKRAAVAL-KWKGIELCGVSFDLLLAAYLLDPAQGVDDVA 127 (592)
T ss_dssp EEEEETTEEEEECHHHHT-TC-HHHHHHHTCTTSEEEESSHHHHHHHH-HHTTCCCCCEEEEHHHHHHHHCGGGCCCSHH
T ss_pred EEEEcCCceEEEccchhh-HH-HHHHHHHhCCCCeEEEechHHHHHHH-HHcCCCCCCccchHHHHHHHcCCCCCCCCHH
Confidence 588988888999764211 23 56999999999999999999999999 56899885 699999999999985 59999
Q ss_pred HHHHHHcCCCCCcccccccCCC---CCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 006313 78 YLLHHFCGVNANKEYQNADWRV---RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 132 (651)
Q Consensus 78 ~LVe~yLGv~LdK~~q~SDW~~---RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e~G 132 (651)
.|+++|||+.+.+..+..+|+. +|..+.+..||+.||.+++.||+.|..+|.+.+
T Consensus 128 ~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~ 185 (592)
T 3pv8_A 128 AAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNE 185 (592)
T ss_dssp HHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999988777777763 566688999999999999999999999999865
No 12
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=99.43 E-value=2e-13 Score=121.91 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHHHHhhhCCChhHHHHhHHHHHHHHHHHH
Q 006313 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 253 (651)
Q Consensus 180 ~~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~eeL~~i~G~~~~~v~r~G~eIL~iI~~Al 253 (651)
..+.++|++|+.||.++|+++|+|||+||+|.+|++||+++|+|.++|.+|.|++..++++| +.||++|+.+.
T Consensus 12 ~~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~ 84 (103)
T 2e1f_A 12 ETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFC 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 35578999999999999999999999999999999999999999999999999999999999 99999998763
No 13
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=99.42 E-value=2.2e-13 Score=123.51 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHHHHhhhCCChhHHHHhHHHHHHHHHHHH
Q 006313 181 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 253 (651)
Q Consensus 181 ~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~eeL~~i~G~~~~~v~r~G~eIL~iI~~Al 253 (651)
.+.++|++|+.||.++|+++|+|+|+||+|.+|++||+++|+|.++|.+|.|++..++++| ++||++|+.+.
T Consensus 20 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~ 91 (113)
T 2dgz_A 20 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFC 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999 99999998864
No 14
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.32 E-value=4.8e-12 Score=142.53 Aligned_cols=128 Identities=21% Similarity=0.219 Sum_probs=104.7
Q ss_pred Ceeee-CCccEEEecCC--------cc-chhhHHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcCc-eehHHHHHHHh
Q 006313 1 MQIST-RTEDFVVDTLK--------LR-VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN-MFDTGQASRVL 69 (651)
Q Consensus 1 IQIAT-~~~~~LID~la--------L~-~dL~~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~n-lFDTqLAA~lL 69 (651)
||+++ .+..++|.+.. +. .++.+.|+++|+|+.+.||+|++++|+.+| ..+|+.+.+ +|||++|+|+|
T Consensus 48 I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L-~~~Gi~l~~~~~DT~laayLL 126 (605)
T 2kfn_A 48 LSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGIL-ANYGIELRGIAFDTMLESYIL 126 (605)
T ss_dssp EEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHHHHTCTTSCEEESSHHHHHHHH-HTTTCCCCCEEEEHHHHHHHH
T ss_pred EEEEEcCCcEEEEeccccccccccccCHHHHHHHHHHHHcCCCCeEEEECcHHHHHHH-HHCCCCCCCccccHHHHHHHh
Confidence 46775 56666663221 11 122256999999999999999999999999 458998875 89999999999
Q ss_pred CCC--CCcHHHHHHHHcCCCC-------CcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 006313 70 KLE--RNSLEYLLHHFCGVNA-------NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 130 (651)
Q Consensus 70 g~~--~~gL~~LVe~yLGv~L-------dK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e 130 (651)
++. +++|..|+++|||+.. .|+.+.++|..+|| +++..||+.||.+++.||..|..+|.+
T Consensus 127 ~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 127 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp CTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 5999999999999875 35666779998888 779999999999999999999998875
No 15
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.10 E-value=3.1e-11 Score=138.12 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=103.5
Q ss_pred Ceeee--CCccEEEecCCccchhhHHHHHhhcCCCceEEEeec-cccHHHHHHhh------CCCcC--ceehHHHHHHHh
Q 006313 1 MQIST--RTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA-DRDIVWLQRDF------GIYLC--NMFDTGQASRVL 69 (651)
Q Consensus 1 IQIAT--~~~~~LID~laL~~dL~~~L~~lLeDp~I~KV~H~a-k~DL~~L~rdf------GI~p~--nlFDTqLAA~lL 69 (651)
|||.+ .+.+++||+..+...+ +.|+++|+ +.+.||+|++ ++|+.+|.+.+ |+.+. .+|||++|+|+|
T Consensus 21 iqi~~~~~~~~~~~~p~~i~~~l-~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL 98 (698)
T 1x9m_A 21 GVIYDYSTAEYVSYRPSDFGAYL-DALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLI 98 (698)
T ss_dssp EEEEETTTTEEEEECGGGHHHHH-HHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHH
T ss_pred EEEEecCCCcEEEEChHHHHHHH-HHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHh
Confidence 58887 4578999988775334 57999999 9999999999 99999997654 88765 599999999999
Q ss_pred CCC--CCcHHHHHHHHc-------CCCC-----C-----------cccc--c-ccCCCCCCCHHHHHHHHHhHHHHHHHH
Q 006313 70 KLE--RNSLEYLLHHFC-------GVNA-----N-----------KEYQ--N-ADWRVRPLPDEMLRYAREDTHYLLYIY 121 (651)
Q Consensus 70 g~~--~~gL~~LVe~yL-------Gv~L-----d-----------K~~q--~-SDW~~RPLS~eQl~YAA~DV~yLl~Ly 121 (651)
++. .++|+.|+.+|| |+.+ + |+.+ . .+|.. +++.+..||+.||.+++.||
T Consensus 99 ~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~~~~~~~YA~~Da~~t~~L~ 176 (698)
T 1x9m_A 99 HSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN--FNEEMMDYNVQDVVVTKALL 176 (698)
T ss_dssp TTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS--CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccc--cCHHHHHHHHHHHHHHHHHH
Confidence 985 589999999997 4333 1 2222 1 28864 66889999999999999999
Q ss_pred HHHHHHHhcCC
Q 006313 122 DIMKIKLSSMP 132 (651)
Q Consensus 122 d~L~~~L~e~G 132 (651)
..|..+|.+.+
T Consensus 177 ~~L~~~L~~~~ 187 (698)
T 1x9m_A 177 EKLLSDKHYFP 187 (698)
T ss_dssp HHHHTCTTTSC
T ss_pred HHHHHHHHhcc
Confidence 99999998765
No 16
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.71 E-value=2.8e-08 Score=110.97 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=83.2
Q ss_pred CeeeeCCccEEEecCCccchhhHHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcCceehHHHHHHHhCCCCCcHHHHH
Q 006313 1 MQISTRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 80 (651)
Q Consensus 1 IQIAT~~~~~LID~laL~~dL~~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~nlFDTqLAA~lLg~~~~gL~~LV 80 (651)
|||++++++|+|| ..+ +.|++||+| +.||+|++++|+. .+|+.+..+|||++|+|+|++++++|+.|+
T Consensus 32 i~la~~~~a~~i~-----~~l-~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~~fDT~laAyLL~p~~~~L~~La 99 (540)
T 4dfk_A 32 LAAARGGRVHRAP-----EPY-KALRDLKEA--RGLLAKDLSVLAL----REGLGLPPGDDPMLLAYLLDPSNTTPEGVA 99 (540)
T ss_dssp EEEEETTEEEECS-----SHH-HHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCBCCCHHHHHHHHCTTCCCHHHHH
T ss_pred EEEEcCCEEEEeh-----hhH-HHHHHHHcC--CCEEEeccHHHHH----HcCCCCCcceeHHHHHHHhCCCCCCHHHHH
Confidence 5888888888887 124 468999999 8899999999999 578877689999999999998889999999
Q ss_pred HHHcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006313 81 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 128 (651)
Q Consensus 81 e~yLGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L 128 (651)
++|+++ +. .+|+.||.+++.||..|..+|
T Consensus 100 ~~yl~~-~g------------------k~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 100 RRYGGE-WT------------------EEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp HHHTSC-CC------------------SCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhh-hc------------------cchHHHHHHHHHHHHHHHHHH
Confidence 999986 22 146789999999999999999
No 17
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=97.38 E-value=0.00021 Score=83.65 Aligned_cols=82 Identities=17% Similarity=0.093 Sum_probs=70.2
Q ss_pred HHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcCceehHHHHHHHhCCCCCcHHHHHHHHcCCCCCcccccccCCCCCC
Q 006313 23 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 102 (651)
Q Consensus 23 ~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~nlFDTqLAA~lLg~~~~gL~~LVe~yLGv~LdK~~q~SDW~~RPL 102 (651)
+.|++||+|+.+ ++++|+.+| ..+|+.+..+|||++|+|+|++..++|..|+.+| | | +|.
T Consensus 340 ~~Lk~lLed~~i-----n~K~d~~~L-~~~Gi~~~~~~Dt~laayLl~p~~~~l~~l~~~~-g----k-----~~~---- 399 (832)
T 1bgx_T 340 KALRDLKEARGL-----LAKDLSVLA-LREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRY-G----G-----EWT---- 399 (832)
T ss_dssp HHHHHCSSBCBT-----THHHHHHHH-HHHTCCCCBCCCHHHHHHHHCTTCCSTTHHHHHH-S----C-----CCC----
T ss_pred HHHHHHHhCCCC-----ChHHHHHHH-HHcCCccCcccCHHHHHHHcCCCCCCHHHHHHHh-C----C-----Cch----
Confidence 469999999987 999999999 5699998877999999999998668999999999 3 2 241
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006313 103 PDEMLRYAREDTHYLLYIYDIMKIKLS 129 (651)
Q Consensus 103 S~eQl~YAA~DV~yLl~Lyd~L~~~L~ 129 (651)
++ || .||.+++.||..|..+|.
T Consensus 400 --~~--ya-~da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 400 --EE--AG-ERAALSERLFANLWGRLE 421 (832)
T ss_dssp --SS--HH-HHHHHHHHHHHHHHHHHT
T ss_pred --HH--HH-HHHHHHHHHHHHHHHHHh
Confidence 12 88 699999999999999997
No 18
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=96.77 E-value=0.0017 Score=64.03 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=66.7
Q ss_pred CCceEEEeeccccHHHHHHh---hCCCc-----CceehHHHHHHHhCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCC
Q 006313 32 PTKKKVMHGADRDIVWLQRD---FGIYL-----CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLP 103 (651)
Q Consensus 32 p~I~KV~H~ak~DL~~L~rd---fGI~p-----~nlFDTqLAA~lLg~~~~gL~~LVe~yLGv~LdK~~q~SDW~~RPLS 103 (651)
...+.|+|+++.|+.+|.+. +|+.. ..++||+.+++.+.+ .++|..|++.| |+.++.
T Consensus 133 ~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p-~~~L~~l~~~~-gi~~~~------------- 197 (235)
T 3v9w_A 133 NRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG-QTVLSKACQTA-GMDFDS------------- 197 (235)
T ss_dssp CEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS-CCSHHHHHHHH-TCCCCT-------------
T ss_pred CCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC-CCCHHHHHHHc-CCCCCC-------------
Confidence 46789999999999998544 37742 258999999987654 47999999876 554321
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Q 006313 104 DEMLRYAREDTHYLLYIYDIMKIKLSSMPK 133 (651)
Q Consensus 104 ~eQl~YAA~DV~yLl~Lyd~L~~~L~e~Gr 133 (651)
....+|..||.++..||..|..+|.+.+.
T Consensus 198 -~~~H~Al~DA~~ta~l~~~l~~~l~~~~~ 226 (235)
T 3v9w_A 198 -TQAHSALYDTERTAVLFCEIVNRWKRLGG 226 (235)
T ss_dssp -TTTTCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -CCCcChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 12367999999999999999999998763
No 19
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=96.12 E-value=0.019 Score=49.26 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCHHHHHhhhCCChhHHHH--hHHHHHHHHH
Q 006313 184 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER--YMGPVLSIIK 250 (651)
Q Consensus 184 aVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~eeL~~i~G~~~~~v~r--~G~eIL~iI~ 250 (651)
..+..|.+.|..++.+.+.|...+++|..|.+||...|.|.+++..|.|..+..+++ |-..++-.++
T Consensus 7 ~ay~~Lr~~~i~~s~~~~p~~s~~m~d~~Lrk~A~~LP~~e~eF~~L~g~~~~~~~~fk~FK~~l~~L~ 75 (81)
T 1d8b_A 7 MTYERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRFKYFKATIADLS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHHGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCchhhhccHHHHHHHHHHCCCCHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999998877775 5555554444
No 20
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=94.54 E-value=0.085 Score=51.47 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=63.0
Q ss_pred CceEEEeeccccHHHHHH---hhCCC--c---CceehHHHHHHHhCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCH
Q 006313 33 TKKKVMHGADRDIVWLQR---DFGIY--L---CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPD 104 (651)
Q Consensus 33 ~I~KV~H~ak~DL~~L~r---dfGI~--p---~nlFDTqLAA~lLg~~~~gL~~LVe~yLGv~LdK~~q~SDW~~RPLS~ 104 (651)
..+.|+|++..|+.+|.+ .+|+. + ...+||+..++.+- +.++|..|++. +|+.+...
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~-~~~~L~~l~~~-~gi~~~~~------------- 190 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY-GQTVLAKACQA-AGMEFDNR------------- 190 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH-SCCSHHHHHHH-TTCCCCTT-------------
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHc-CCCCHHHHHHH-cCCCcCCC-------------
Confidence 456899999999998864 35664 2 35899987766543 34789999876 57765311
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCC
Q 006313 105 EMLRYAREDTHYLLYIYDIMKIKLSSMPKE 134 (651)
Q Consensus 105 eQl~YAA~DV~yLl~Lyd~L~~~L~e~Gr~ 134 (651)
....|..||.++..|+..|..++.+.|.|
T Consensus 191 -~~H~Al~Da~~ta~l~~~l~~~~~~~~~~ 219 (224)
T 2f96_A 191 -EAHSARYDTEKTAELFCGIVNRWKEMGGW 219 (224)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11347899999999999999999987744
No 21
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=93.86 E-value=0.2 Score=49.02 Aligned_cols=91 Identities=26% Similarity=0.243 Sum_probs=64.6
Q ss_pred HHHHHhhcCC--CceEEEeec-cccHHHHHH---hhCCCcC---ceehHHHHHHHhC---------C--CCCcHHHHHHH
Q 006313 23 PYLREVFKDP--TKKKVMHGA-DRDIVWLQR---DFGIYLC---NMFDTGQASRVLK---------L--ERNSLEYLLHH 82 (651)
Q Consensus 23 ~~L~~lLeDp--~I~KV~H~a-k~DL~~L~r---dfGI~p~---nlFDTqLAA~lLg---------~--~~~gL~~LVe~ 82 (651)
..|..+|.+- ..+.|+|++ ..|+.+|.+ .+|+... .++||+..++.+. + ..++|..|+++
T Consensus 101 ~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~ 180 (238)
T 1y97_A 101 RTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 180 (238)
T ss_dssp HHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHH
Confidence 4567788762 256789999 999998864 3566542 4899987666442 2 36899999998
Q ss_pred HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006313 83 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129 (651)
Q Consensus 83 yLGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~ 129 (651)
++|+... ....|..||.++..|+..|..++.
T Consensus 181 ~~gi~~~----------------~~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 181 YFRAEPS----------------AAHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp HHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred HhCCCCc----------------cCccHHHHHHHHHHHHHHHHHHHH
Confidence 8887642 135688999999999988776654
No 22
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=93.27 E-value=0.11 Score=51.99 Aligned_cols=91 Identities=20% Similarity=0.112 Sum_probs=65.3
Q ss_pred HHHHHhhcC--CCceEEEeec-cccHHHHHHh---hCCCc--C--ceehHHHHHHHhC----------CCCCcHHHHHHH
Q 006313 23 PYLREVFKD--PTKKKVMHGA-DRDIVWLQRD---FGIYL--C--NMFDTGQASRVLK----------LERNSLEYLLHH 82 (651)
Q Consensus 23 ~~L~~lLeD--p~I~KV~H~a-k~DL~~L~rd---fGI~p--~--nlFDTqLAA~lLg----------~~~~gL~~LVe~ 82 (651)
+.|..++.+ +..+.|+|++ ..|+.+|.+. +|+.. . .++||+..++.+. ..+++|..|+++
T Consensus 106 ~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~ 185 (242)
T 3mxm_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (242)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHH
Confidence 456677766 2256799996 9999888653 46653 2 5799997776432 246899999999
Q ss_pred HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006313 83 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129 (651)
Q Consensus 83 yLGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~ 129 (651)
++|+..... .-|..||.++..|+..+..++.
T Consensus 186 ~~gi~~~~~----------------H~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 186 LYWQAPTDS----------------HTAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHSSCCSST----------------TSHHHHHHHHHHHHTSSHHHHH
T ss_pred HhCCCCCCC----------------cChHHHHHHHHHHHHHHHHHHH
Confidence 999876421 3378899999999887766655
No 23
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=92.38 E-value=0.25 Score=46.76 Aligned_cols=87 Identities=18% Similarity=0.133 Sum_probs=62.3
Q ss_pred HHHHhhcCCCceEEEeeccccHHHHHHh---hCCCc--CceehHHHHHHHh-CCCCCcHHHHHHHHcCCCCCcccccccC
Q 006313 24 YLREVFKDPTKKKVMHGADRDIVWLQRD---FGIYL--CNMFDTGQASRVL-KLERNSLEYLLHHFCGVNANKEYQNADW 97 (651)
Q Consensus 24 ~L~~lLeDp~I~KV~H~ak~DL~~L~rd---fGI~p--~nlFDTqLAA~lL-g~~~~gL~~LVe~yLGv~LdK~~q~SDW 97 (651)
.|..++.+ .+.|+|++..|+.+|.+. +|+.+ ..++||+..++.+ +...++|..|++. +|+....
T Consensus 85 ~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~-~gi~~~~------- 154 (186)
T 2p1j_A 85 EFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVVEK-LGLGPFR------- 154 (186)
T ss_dssp HHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHHHH-TTCCSTT-------
T ss_pred HHHHHHCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHHHH-cCCCCCC-------
Confidence 45667764 468999999999988643 46653 3689998776655 3456899999985 5766431
Q ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006313 98 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129 (651)
Q Consensus 98 ~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~ 129 (651)
...|..||.++..|+..|..+..
T Consensus 155 ---------~H~Al~Da~~t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 155 ---------HHRALDDARVTAQVFLRFVEMMK 177 (186)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHTTCC-
T ss_pred ---------CcCHHHHHHHHHHHHHHHHHHHH
Confidence 25688999999999887654433
No 24
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=92.37 E-value=0.35 Score=45.97 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=65.5
Q ss_pred HHHHHhhcCCCceEEEeeccccHHHHHHhhCCCcCceehHHHHHHH---hCC---CCCcHHHHHHHHcCCCCCccccccc
Q 006313 23 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV---LKL---ERNSLEYLLHHFCGVNANKEYQNAD 96 (651)
Q Consensus 23 ~~L~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~p~nlFDTqLAA~l---Lg~---~~~gL~~LVe~yLGv~LdK~~q~SD 96 (651)
+.|..++.+ .+.|+|++..|+.+|...+ ....++||+....+ .+. ..++|..|++.++|+.+....
T Consensus 75 ~~~~~~l~~--~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~---- 146 (189)
T 1wlj_A 75 LEILQLLKG--KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSL---- 146 (189)
T ss_dssp HHHHHHHTT--SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCT----
T ss_pred HHHHHHHCC--CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCC----
Confidence 346677864 5789999999999994332 22358999753221 132 368999999999998765321
Q ss_pred CCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 006313 97 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 132 (651)
Q Consensus 97 W~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e~G 132 (651)
....|..||.++..|+..|...+...+
T Consensus 147 ---------~~H~Al~Da~ata~l~~~l~~~~~~~~ 173 (189)
T 1wlj_A 147 ---------LGHSSVEDARATMELYQISQRIRARRG 173 (189)
T ss_dssp ---------TCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---------CCcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 013478999999999999998888765
No 25
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=90.84 E-value=0.63 Score=48.77 Aligned_cols=91 Identities=18% Similarity=0.085 Sum_probs=65.5
Q ss_pred HHHHHhhcC--CCceEEEee-ccccHHHHHHh---hCCCc----CceehHHHHHH-HhC---------CCCCcHHHHHHH
Q 006313 23 PYLREVFKD--PTKKKVMHG-ADRDIVWLQRD---FGIYL----CNMFDTGQASR-VLK---------LERNSLEYLLHH 82 (651)
Q Consensus 23 ~~L~~lLeD--p~I~KV~H~-ak~DL~~L~rd---fGI~p----~nlFDTqLAA~-lLg---------~~~~gL~~LVe~ 82 (651)
+.|..++.+ ...+.|.|+ +.+|+.+|.+. +|+.. ..++||....+ +.. ..+++|+.|+++
T Consensus 106 ~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~ 185 (314)
T 3u3y_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (314)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHH
Confidence 446677766 225789999 89999998653 46553 23789987655 322 135899999999
Q ss_pred HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006313 83 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 129 (651)
Q Consensus 83 yLGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~ 129 (651)
|+|+..... .-|..||..+..|+..+.+++.
T Consensus 186 l~gi~~~~a----------------HrAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 186 LYWQAPTDS----------------HTAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp HHSSCCSCS----------------SSHHHHHHHHHHHHHSSHHHHH
T ss_pred hcCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 999876422 2377899999999988777665
No 26
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=90.82 E-value=0.88 Score=42.98 Aligned_cols=86 Identities=23% Similarity=0.268 Sum_probs=59.4
Q ss_pred HHHHhhcCCCceEEEeeccccHHHHHHh---hCCC-c-----CceehHHHHHHHhCCC-CCcHHHHHHHHcCCCCCcccc
Q 006313 24 YLREVFKDPTKKKVMHGADRDIVWLQRD---FGIY-L-----CNMFDTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQ 93 (651)
Q Consensus 24 ~L~~lLeDp~I~KV~H~ak~DL~~L~rd---fGI~-p-----~nlFDTqLAA~lLg~~-~~gL~~LVe~yLGv~LdK~~q 93 (651)
.|..++.+ ...|+|++..|+.+|.+. +|+. | ..++||+..++.+-+. .++|..|++. +|+.....
T Consensus 88 ~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~-~gi~~~~~-- 162 (194)
T 2gui_A 88 EFMDYIRG--AELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCAR-YEIDNSKR-- 162 (194)
T ss_dssp HHHHHHTT--SEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHH-TTCCCTTC--
T ss_pred HHHHHHCC--CeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHH-cCcCCCCC--
Confidence 46677765 357899999999988643 4665 2 3689998666655443 5799999876 57665321
Q ss_pred cccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q 006313 94 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 126 (651)
Q Consensus 94 ~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~ 126 (651)
...-|..||.++..||..|..
T Consensus 163 ------------~~H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 163 ------------TLHGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp ------------SSCCHHHHHHHHHHHHHHHTC
T ss_pred ------------CCCChHHHHHHHHHHHHHHHh
Confidence 013378899999999877543
No 27
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=78.72 E-value=5.8 Score=40.51 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=60.6
Q ss_pred HHHHhhcCC-----CceEEEeeccccHH-HHHHh---hCCCcC----ceehHHHHH-HHhCCCC--CcHHHHHHHHcCCC
Q 006313 24 YLREVFKDP-----TKKKVMHGADRDIV-WLQRD---FGIYLC----NMFDTGQAS-RVLKLER--NSLEYLLHHFCGVN 87 (651)
Q Consensus 24 ~L~~lLeDp-----~I~KV~H~ak~DL~-~L~rd---fGI~p~----nlFDTqLAA-~lLg~~~--~gL~~LVe~yLGv~ 87 (651)
.|..++.+. ..+.|+|++..|+. +|.+. +|+... .++||+... .+++... ++|..|++. +|+.
T Consensus 159 ~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi~ 237 (299)
T 1zbh_A 159 KVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMD 237 (299)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCC
T ss_pred HHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHH-cCCC
Confidence 455677653 14679999999998 88543 465532 589997543 3455443 899999876 5766
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006313 88 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 128 (651)
Q Consensus 88 LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L 128 (651)
.... ..-|..||.++..|+..|..+.
T Consensus 238 ~~g~---------------~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 238 YDGR---------------PNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CCSC---------------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC---------------CCChHHHHHHHHHHHHHHHHhC
Confidence 4310 1337889999999998876554
No 28
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=77.99 E-value=7.7 Score=36.55 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=59.3
Q ss_pred HHHHhhcCCC-----ceEEEeeccccHH-HHHH---hhCCCcC----ceehHHHHHH-HhCCC--CCcHHHHHHHHcCCC
Q 006313 24 YLREVFKDPT-----KKKVMHGADRDIV-WLQR---DFGIYLC----NMFDTGQASR-VLKLE--RNSLEYLLHHFCGVN 87 (651)
Q Consensus 24 ~L~~lLeDp~-----I~KV~H~ak~DL~-~L~r---dfGI~p~----nlFDTqLAA~-lLg~~--~~gL~~LVe~yLGv~ 87 (651)
.|..++.+.. ...|+|++..|+. +|.+ .+|+... .++||+..+. +++.. .++|..|++. +|+.
T Consensus 91 ~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~-~gi~ 169 (204)
T 1w0h_A 91 KVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMD 169 (204)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCC
T ss_pred HHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHH-cCCC
Confidence 3555666432 3579999999996 8854 3565532 5899986554 45432 4899999876 5766
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006313 88 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 128 (651)
Q Consensus 88 LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L 128 (651)
.... ..-|..||.++..|+..|..+.
T Consensus 170 ~~~~---------------~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 170 YDGR---------------PHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp CCSC---------------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC---------------ccCcHHHHHHHHHHHHHHHHCC
Confidence 4310 1237889999999988876543
No 29
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=74.46 E-value=7.6 Score=42.12 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhC---CCCHHHHHhhhCCChhHHHHhHHHHHHHHH
Q 006313 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL---PTTAAKLRRLLKSKHSYIERYMGPVLSIIK 250 (651)
Q Consensus 180 ~~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~---P~S~eeL~~i~G~~~~~v~r~G~eIL~iI~ 250 (651)
+...++++.|..++..+|.+.++|+..|++.+.|..|+-.. +....++.+..|...=..+-.|+.++.+|+
T Consensus 360 ~~~~~~~~~l~~~~~~~a~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~l~~~g~~~Wr~~~~~~~~~~~~~ 433 (440)
T 3cym_A 360 PERLQVLNRVRKAVSQIAEDTRTPVEIVIKPQYLRNLCWTDEPRKRDVARFLSEQGARDWQVSLVAESVSRAIE 433 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHSCHHHHHHHHCSSCGGGCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHcCCHHHHHHHhCcCCCChhhHhHHHhhccCCCchHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999432 345667776667666555667888877765
No 30
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=73.94 E-value=8.3 Score=40.61 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=60.3
Q ss_pred HHHHhhcCC-----CceEEEeeccccHH-HHHHh---hCCCc----CceehHHHHHH-HhCCCC--CcHHHHHHHHcCCC
Q 006313 24 YLREVFKDP-----TKKKVMHGADRDIV-WLQRD---FGIYL----CNMFDTGQASR-VLKLER--NSLEYLLHHFCGVN 87 (651)
Q Consensus 24 ~L~~lLeDp-----~I~KV~H~ak~DL~-~L~rd---fGI~p----~nlFDTqLAA~-lLg~~~--~gL~~LVe~yLGv~ 87 (651)
.|..|+.+. ..+.|+|++..|+. +|... +|+.. ..++||+.... +++... ++|..|++. +|+.
T Consensus 209 ~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi~ 287 (349)
T 1zbu_A 209 KVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMD 287 (349)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-TTCC
T ss_pred HHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-cCCC
Confidence 355677653 14679999999998 88543 46553 25889985443 455443 899999876 5766
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006313 88 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 128 (651)
Q Consensus 88 LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L 128 (651)
.... ..-|..||.++..|+..|..+.
T Consensus 288 ~~g~---------------~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 288 YDGR---------------PHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCSC---------------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC---------------CCCHHHHHHHHHHHHHHHHHhc
Confidence 4310 1337889999999988876544
No 31
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=69.21 E-value=11 Score=41.40 Aligned_cols=86 Identities=15% Similarity=0.034 Sum_probs=55.8
Q ss_pred HHHHhhcCCCceEEEee-ccccHHHHHHh---hCCCc--------CceehHHHHHHHh---------------CCCCCcH
Q 006313 24 YLREVFKDPTKKKVMHG-ADRDIVWLQRD---FGIYL--------CNMFDTGQASRVL---------------KLERNSL 76 (651)
Q Consensus 24 ~L~~lLeDp~I~KV~H~-ak~DL~~L~rd---fGI~p--------~nlFDTqLAA~lL---------------g~~~~gL 76 (651)
.|..++..+..+.|+|+ +..|+.+|.+. +|+.+ ...+||.-.++.+ +...++|
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL 166 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL 166 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCH
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCH
Confidence 35567764567889998 89999887543 34432 3478887555432 2235789
Q ss_pred HHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q 006313 77 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 126 (651)
Q Consensus 77 ~~LVe~yLGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~ 126 (651)
..|++. +|+..... .-|..||.++..|+..|..
T Consensus 167 ~~L~~~-~Gi~~~~a----------------HrAL~DA~aTa~l~~~l~~ 199 (482)
T 2qxf_A 167 EHLTKA-NGIEHSNA----------------HDAMADVYATIAMAKLVKT 199 (482)
T ss_dssp HHHHHH-TTCCCC-------------------CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCC----------------CCHHHHHHHHHHHHHHHHH
Confidence 999865 57654321 3366788888888887654
No 32
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=49.51 E-value=7 Score=41.07 Aligned_cols=69 Identities=7% Similarity=-0.012 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccchhHHHHHHHhCCCCH--HHHHhhhCCChhHHHHhHHHHHHHHH
Q 006313 180 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA--AKLRRLLKSKHSYIERYMGPVLSIIK 250 (651)
Q Consensus 180 ~~qlaVL~~L~~WRe~iAr~~DiPp~~VLsD~~LleIAk~~P~S~--eeL~~i~G~~~~~v~r~G~eIL~iI~ 250 (651)
+...++++.|..|+..+|.+.++|+..|++.+.|..|+...|.+. .++-.+ +..=..+-.|+.+++++.
T Consensus 301 ~~~~~~~~~l~~~~~~~a~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~--l~~Wr~~~~~~~l~~~l~ 371 (375)
T 1yt3_A 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPEL--ISGWRGELMAEALHNLLQ 371 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHHTTCSCCSSCCGG--GSHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHcCCHHHHHHHHhhcccCCCcchhhhh--hcchHHHHHHHHHHHHHh
Confidence 566789999999999999999999999999999999997533211 111111 112123346777776664
No 33
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=33.52 E-value=47 Score=36.64 Aligned_cols=102 Identities=18% Similarity=0.057 Sum_probs=62.8
Q ss_pred HHhhcCCCceEEEeeccccHHHHHHhhCCC-c--------------CceehHHHHHHHhC----CCCCcHHHHHHHHcCC
Q 006313 26 REVFKDPTKKKVMHGADRDIVWLQRDFGIY-L--------------CNMFDTGQASRVLK----LERNSLEYLLHHFCGV 86 (651)
Q Consensus 26 ~~lLeDp~I~KV~H~ak~DL~~L~rdfGI~-p--------------~nlFDTqLAA~lLg----~~~~gL~~LVe~yLGv 86 (651)
.+.|...+++.|+|++-.|+..|++.|--. | +.++||...+.... ....+|..|.+.+-..
T Consensus 269 ~~~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~ 348 (507)
T 3d45_A 269 IHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKET 348 (507)
T ss_dssp HHHHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTST
T ss_pred HHHHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhcc
Confidence 344555678899999999997776655322 2 35899997765321 1247899998876422
Q ss_pred C--CCcc---cccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 006313 87 N--ANKE---YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 130 (651)
Q Consensus 87 ~--LdK~---~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e 130 (651)
. .... .....|. .......-|+-|++..-.++-.|...|..
T Consensus 349 ~~~~p~i~~~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l~~ 394 (507)
T 3d45_A 349 PFDPPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYLGS 394 (507)
T ss_dssp TCCCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCeEEecccccccc---cCCCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 1 1110 0111121 11223355889999999999999887763
No 34
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=32.77 E-value=42 Score=40.69 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=67.1
Q ss_pred CceEEEeeccccHHHHHHhhCCCcC--ceehHHHHHHH-h------------------------------------CC--
Q 006313 33 TKKKVMHGADRDIVWLQRDFGIYLC--NMFDTGQASRV-L------------------------------------KL-- 71 (651)
Q Consensus 33 ~I~KV~H~ak~DL~~L~rdfGI~p~--nlFDTqLAA~l-L------------------------------------g~-- 71 (651)
..+.|+|+..+|-..+...|.+... ..+|||-.+.. - ++
T Consensus 194 ~rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~ 273 (1172)
T 3ikm_A 194 EQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAI 273 (1172)
T ss_dssp CCCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC------------------------
T ss_pred ccEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCccc
Confidence 3567999999999777678887764 36788743210 0 01
Q ss_pred --------C-CC--cHHHHHHHHcCC-CCCcccccccCCCCCCC------HHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 006313 72 --------E-RN--SLEYLLHHFCGV-NANKEYQNADWRVRPLP------DEMLRYAREDTHYLLYIYDIMKIKLSS 130 (651)
Q Consensus 72 --------~-~~--gL~~LVe~yLGv-~LdK~~q~SDW~~RPLS------~eQl~YAA~DV~yLl~Lyd~L~~~L~e 130 (651)
. -. ||.++...|||+ .++|.. +..|..-.+. .+.+.|+|.||.....+|..|.....+
T Consensus 274 ~~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~-Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~e 349 (1172)
T 3ikm_A 274 SSWDWLDISSVNSNSLAEVHRLYVGGPPLEKEP-RELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLE 349 (1172)
T ss_dssp --CCCCCCCCTTSHHHHHHHTCSSCSCS--SCS-SSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcccccCCCcCCHHHHHHHhCCCcccChhh-HhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0 14 788999999997 888754 3334333333 667899999999999999999887654
No 35
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=31.59 E-value=83 Score=32.35 Aligned_cols=84 Identities=11% Similarity=0.026 Sum_probs=57.9
Q ss_pred cCCCceEEEeeccccHHHHHHhh-CCC---------------cCceehHHHHHHHhCCCCCcHHHHHHHHcCCC-CCccc
Q 006313 30 KDPTKKKVMHGADRDIVWLQRDF-GIY---------------LCNMFDTGQASRVLKLERNSLEYLLHHFCGVN-ANKEY 92 (651)
Q Consensus 30 eDp~I~KV~H~ak~DL~~L~rdf-GI~---------------p~nlFDTqLAA~lLg~~~~gL~~LVe~yLGv~-LdK~~ 92 (651)
-++++.+|.|....|+..|.+.+ |-. .+.++||...+..+..-.-||++|++. |++. +.+.
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~-L~v~r~g~~- 224 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQ-LELERIGPQ- 224 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHH-TTCCCCSCT-
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHh-CCCCCCCCC-
Confidence 46789999888888885554322 211 145899998877765545789999876 4543 1111
Q ss_pred ccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 006313 93 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 130 (651)
Q Consensus 93 q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e 130 (651)
.-|..|+.....+|-.|++.+-.
T Consensus 225 ---------------HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 225 ---------------HQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp ---------------TSHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------CcchhHHHHHHHHHHHHHHHHhc
Confidence 22788999999999999887764
No 36
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=31.00 E-value=61 Score=35.00 Aligned_cols=106 Identities=16% Similarity=0.057 Sum_probs=61.4
Q ss_pred HHHhhcCCCceEEEeeccccHHHHHHhh-CCCc--------------CceehHHHHHHHhCC----CCCcHHHHHHHHcC
Q 006313 25 LREVFKDPTKKKVMHGADRDIVWLQRDF-GIYL--------------CNMFDTGQASRVLKL----ERNSLEYLLHHFCG 85 (651)
Q Consensus 25 L~~lLeDp~I~KV~H~ak~DL~~L~rdf-GI~p--------------~nlFDTqLAA~lLg~----~~~gL~~LVe~yLG 85 (651)
+.+.|...+.+.|+|++-.|+..+++.| |-.| +.++||.+.+..... ...+|..|.+.+..
T Consensus 273 V~~~L~~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~ 352 (430)
T 2a1r_A 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKE 352 (430)
T ss_dssp HHHHHHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTS
T ss_pred HHHHHHhCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHHh
Confidence 3344545566789999999997665544 3222 458999977754322 23689998776533
Q ss_pred CCC--CcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 006313 86 VNA--NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 130 (651)
Q Consensus 86 v~L--dK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~L~e 130 (651)
... .....-.....-.-..++..-|+-|++..-.++-.|...|..
T Consensus 353 ~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~~ 399 (430)
T 2a1r_A 353 TPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGS 399 (430)
T ss_dssp TTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 211 111100000000001234455888999999999888887754
No 37
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=30.02 E-value=27 Score=35.80 Aligned_cols=86 Identities=8% Similarity=-0.047 Sum_probs=52.3
Q ss_pred HHHHhhcCCCceEEEeec------cccH-HHHHH---hhCCCcC----ceehHHHHHH-HhCC-------CCCcHHHHHH
Q 006313 24 YLREVFKDPTKKKVMHGA------DRDI-VWLQR---DFGIYLC----NMFDTGQASR-VLKL-------ERNSLEYLLH 81 (651)
Q Consensus 24 ~L~~lLeDp~I~KV~H~a------k~DL-~~L~r---dfGI~p~----nlFDTqLAA~-lLg~-------~~~gL~~LVe 81 (651)
.|..++.+..+ |.|++ ..|+ .+|.+ .+|+... ..+||+..++ +++. +.++|..|++
T Consensus 101 ~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~ 178 (308)
T 3cg7_A 101 QFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNE 178 (308)
T ss_dssp HHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHH
T ss_pred HHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHHH
Confidence 35556655322 33443 8998 56643 4566543 4789985443 3321 1478999994
Q ss_pred HHcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHH
Q 006313 82 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 127 (651)
Q Consensus 82 ~yLGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~~ 127 (651)
++|+..... ..-|..||.++..|+..|..+
T Consensus 179 -~~gi~~~~~---------------~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 179 -YYDLPTIGR---------------AHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp -HTTCCCCSC---------------TTCHHHHHHHHHHHHHHHHHT
T ss_pred -HcCCCCCCC---------------CcCHHHHHHHHHHHHHHHHHc
Confidence 567665321 133778999999998887653
No 38
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=27.14 E-value=37 Score=30.00 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=34.7
Q ss_pred cchhHHHHHHHhCCCCHHHHHhhhCCChhHHHHhHHHHHHHHHH
Q 006313 208 LPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 251 (651)
Q Consensus 208 LsD~~LleIAk~~P~S~eeL~~i~G~~~~~v~r~G~eIL~iI~~ 251 (651)
|+...++.||--+|.|.++++.|...-. + ....++||++|..
T Consensus 64 l~e~~a~~I~nl~P~t~dElraii~~~~-~-~eel~~ILd~l~k 105 (107)
T 1go3_F 64 IDEKTAVKIADILPEDLDDLRAIYYKRE-L-PENAEEILEIVRK 105 (107)
T ss_dssp CCHHHHHHHHHHCCCSHHHHHHHSTTSC-C-CTTHHHHHHHHTT
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHhccc-C-cHHHHHHHHHHHH
Confidence 7888999999999999999999975543 2 6678888888764
No 39
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=26.11 E-value=60 Score=34.26 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=43.5
Q ss_pred eehHHHHHHHh--C-CCCCcHHHHHHHHcCCCC-Cccccccc-CCCCCCCHHHHHHHHHhHHHHHHHHHH
Q 006313 59 MFDTGQASRVL--K-LERNSLEYLLHHFCGVNA-NKEYQNAD-WRVRPLPDEMLRYAREDTHYLLYIYDI 123 (651)
Q Consensus 59 lFDTqLAA~lL--g-~~~~gL~~LVe~yLGv~L-dK~~q~SD-W~~RPLS~eQl~YAA~DV~yLl~Lyd~ 123 (651)
++|+...++.+ . ...++|..+++++||..- +-...... |. . -....+.|+..||...+.|+..
T Consensus 267 ~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~-~-~~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 267 ILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRE-T-NHQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp ECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHH-H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcHHHHHHHHH-h-CHHHHHHHHHHHHHHHHHHHHH
Confidence 78999888764 3 447999999999999642 11112222 22 1 1145789999999999998876
No 40
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=25.55 E-value=1e+02 Score=35.62 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=65.3
Q ss_pred HHHHhh--cCCCceEEEeec-cccHHHHHHh---hCCCc------------------------CceehHHHHHH-HhCCC
Q 006313 24 YLREVF--KDPTKKKVMHGA-DRDIVWLQRD---FGIYL------------------------CNMFDTGQASR-VLKLE 72 (651)
Q Consensus 24 ~L~~lL--eDp~I~KV~H~a-k~DL~~L~rd---fGI~p------------------------~nlFDTqLAA~-lLg~~ 72 (651)
.|..++ .||.+ .|+|+. ..|+..|..+ +|+.. ...+|+...+. .+...
T Consensus 193 ~f~~~i~~~dPDi-ivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~ 271 (775)
T 1qht_A 193 RFLRVVREKDPDV-LITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLP 271 (775)
T ss_dssp HHHHHHHHHCCSE-EEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCS
T ss_pred HHHHHHHhcCCCE-EEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcC
Confidence 344555 36774 578876 6788776543 34331 23679986665 44556
Q ss_pred CCcHHHHHHHHcCCCCCc--cccc-ccCCCCCCCHHHHHHHHHhHHHHHHHHHHHH
Q 006313 73 RNSLEYLLHHFCGVNANK--EYQN-ADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 125 (651)
Q Consensus 73 ~~gL~~LVe~yLGv~LdK--~~q~-SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~ 125 (651)
.++|..+++++||..... .... .-|...+--...+.|...||..++.|+..+.
T Consensus 272 sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 272 TYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp CCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 799999999999975321 0111 1244333116789999999999999987664
No 41
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=23.00 E-value=98 Score=29.75 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=51.7
Q ss_pred HHHHhhcCCCceEEEeec--------cccHHH-HH---HhhCCCcC----ceehHHH---HHHHhCCCCCcHHHHHHHHc
Q 006313 24 YLREVFKDPTKKKVMHGA--------DRDIVW-LQ---RDFGIYLC----NMFDTGQ---ASRVLKLERNSLEYLLHHFC 84 (651)
Q Consensus 24 ~L~~lLeDp~I~KV~H~a--------k~DL~~-L~---rdfGI~p~----nlFDTqL---AA~lLg~~~~gL~~LVe~yL 84 (651)
.|..++.+.. .|+|++ ..|+.. |. +.+|+... ..+|++- .++-+ .+.++|..|++ ++
T Consensus 110 ~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~-~p~~~L~~l~~-~~ 185 (224)
T 2xri_A 110 RVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGC-WPKNGLLDMNK-GL 185 (224)
T ss_dssp HHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTS-CCTTTHHHHHH-HT
T ss_pred HHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhcc-CCCCCHHHHHH-Hc
Confidence 4556676532 356777 899884 53 24566542 5789542 22222 23589999987 56
Q ss_pred CCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q 006313 85 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 126 (651)
Q Consensus 85 Gv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~ 126 (651)
|+.... ...-|..||.++..|+..|..
T Consensus 186 gi~~~~---------------~~H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 186 SLQHIG---------------RPHSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp TCCCCS---------------CTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC---------------CCcChHHHHHHHHHHHHHHHH
Confidence 765421 113478899999999887654
No 42
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=22.15 E-value=1.2e+02 Score=27.80 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=38.4
Q ss_pred ccccchhHHHHHHHhCCCCHHHHHhhhCCCh-hHHHHhHHHHHHHHHHH
Q 006313 205 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH-SYIERYMGPVLSIIKNS 252 (651)
Q Consensus 205 ~~VLsD~~LleIAk~~P~S~eeL~~i~G~~~-~~v~r~G~eIL~iI~~A 252 (651)
.|-|....++.|+-.+|+|..+|..|..... ++-+...++||++|++.
T Consensus 86 ~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfsee~ie~IL~~i~~~ 134 (136)
T 3ayh_A 86 EFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKLVEKINTT 134 (136)
T ss_dssp TTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTTTHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999998865433 23345788899999875
No 43
>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A {Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A* 1ecn_A* 1eco_A*
Probab=21.19 E-value=1.6e+02 Score=26.10 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=46.6
Q ss_pred hhHHHHHHHhCCCCHHHHHhhhC------CChhHHHHhHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Q 006313 210 NRTLIEIAKQLPTTAAKLRRLLK------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 272 (651)
Q Consensus 210 D~~LleIAk~~P~S~eeL~~i~G------~~~~~v~r~G~eIL~iI~~Ale~~~~~e~~~~~~k~~~~~ 272 (651)
...+..|-...|.+..-+....+ .+.+.++.||..++..|..++.+-+..+..+.+|-+-|..
T Consensus 21 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~~~~~~~~~Hg~~V~~~l~~~v~~l~~l~~~l~~L~~~H~~ 89 (136)
T 1eca_A 21 VGILYAVFKADPSIMAKFTQFAGKDLESIKGTAPFETHANRIVGFFSKIIGELPNIEADVNTFVASHKP 89 (136)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHChHHHHHhHHhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhc
Confidence 35677777777866544332211 1457889999999999999999988888888888776665
Done!