Query 006315
Match_columns 651
No_of_seqs 153 out of 203
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 21:29:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2412 Nuclear-export-signal 100.0 5.1E-98 1E-102 804.4 40.6 566 1-615 1-588 (591)
2 PF07817 GLE1: GLE1-like prote 100.0 1.8E-60 4E-65 484.3 17.5 230 350-581 4-256 (256)
3 KOG2412 Nuclear-export-signal 97.6 0.00099 2.1E-08 75.0 13.6 69 213-288 216-284 (591)
4 PTZ00121 MAEBL; Provisional 97.5 0.0064 1.4E-07 74.6 20.8 16 502-517 1798-1813(2084)
5 PTZ00121 MAEBL; Provisional 97.5 0.0023 5.1E-08 78.2 15.8 8 498-505 1922-1929(2084)
6 KOG1029 Endocytic adaptor prot 97.1 0.02 4.4E-07 67.0 18.1 39 148-190 324-362 (1118)
7 KOG0163 Myosin class VI heavy 96.8 0.03 6.6E-07 65.5 16.2 54 228-281 930-984 (1259)
8 PRK09510 tolA cell envelope in 96.6 0.3 6.6E-06 54.1 21.1 13 126-138 48-60 (387)
9 KOG0163 Myosin class VI heavy 96.4 0.18 3.8E-06 59.5 18.6 13 482-494 1168-1180(1259)
10 PTZ00266 NIMA-related protein 96.4 0.038 8.2E-07 67.4 13.8 10 25-34 227-236 (1021)
11 COG3064 TolA Membrane protein 96.3 0.57 1.2E-05 50.6 20.0 13 126-138 48-60 (387)
12 PF02854 MIF4G: MIF4G domain; 96.1 0.13 2.8E-06 48.9 13.1 174 374-583 2-184 (209)
13 PRK09510 tolA cell envelope in 95.7 0.59 1.3E-05 51.8 17.8 8 260-267 183-190 (387)
14 KOG1029 Endocytic adaptor prot 95.7 0.11 2.5E-06 61.0 12.7 14 177-190 318-331 (1118)
15 COG3064 TolA Membrane protein 95.7 1.9 4.2E-05 46.7 20.7 10 245-254 200-209 (387)
16 PTZ00266 NIMA-related protein 95.6 0.14 3E-06 62.7 13.6 8 499-506 779-786 (1021)
17 smart00543 MIF4G Middle domain 94.0 1.5 3.3E-05 41.8 13.8 168 374-583 2-175 (200)
18 PF09726 Macoilin: Transmembra 93.2 2.7 5.8E-05 50.1 16.6 66 334-402 592-657 (697)
19 KOG0742 AAA+-type ATPase [Post 92.7 8.5 0.00018 43.8 18.4 62 137-198 84-146 (630)
20 KOG4364 Chromatin assembly fac 92.3 2.7 5.9E-05 49.4 14.4 23 611-633 768-793 (811)
21 PF05262 Borrelia_P83: Borreli 91.4 3.5 7.7E-05 47.2 14.0 53 66-136 47-101 (489)
22 KOG4364 Chromatin assembly fac 90.7 3.7 8E-05 48.3 13.3 24 234-257 308-331 (811)
23 PF05262 Borrelia_P83: Borreli 90.5 6.2 0.00014 45.3 14.8 8 70-77 155-162 (489)
24 KOG1144 Translation initiation 89.8 1.7 3.6E-05 52.0 9.8 70 434-515 566-646 (1064)
25 KOG2140 Uncharacterized conser 89.6 0.54 1.2E-05 53.9 5.6 170 350-569 140-312 (739)
26 COG4942 Membrane-bound metallo 89.3 26 0.00057 39.6 18.2 25 233-257 222-246 (420)
27 PF05672 MAP7: MAP7 (E-MAP-115 87.8 25 0.00053 35.4 15.1 25 241-265 100-124 (171)
28 KOG2072 Translation initiation 87.0 30 0.00064 42.2 17.5 13 126-138 688-700 (988)
29 PF12037 DUF3523: Domain of un 86.0 55 0.0012 35.3 19.9 22 126-147 27-50 (276)
30 KOG3054 Uncharacterized conser 85.4 5.4 0.00012 42.1 9.5 18 264-281 158-175 (299)
31 KOG2002 TPR-containing nuclear 83.6 17 0.00037 44.8 13.7 14 148-161 773-786 (1018)
32 COG2268 Uncharacterized protei 82.7 87 0.0019 36.8 18.4 13 310-322 482-494 (548)
33 COG4942 Membrane-bound metallo 82.4 96 0.0021 35.3 20.6 6 509-514 400-405 (420)
34 COG5269 ZUO1 Ribosome-associat 82.3 13 0.00027 40.1 10.8 14 411-424 356-369 (379)
35 PRK00247 putative inner membra 81.2 18 0.00038 41.1 12.1 8 9-16 125-132 (429)
36 PRK14471 F0F1 ATP synthase sub 77.4 72 0.0016 30.9 14.8 15 192-206 61-75 (164)
37 PRK06231 F0F1 ATP synthase sub 77.2 88 0.0019 31.9 14.7 13 192-204 101-113 (205)
38 PRK14475 F0F1 ATP synthase sub 77.0 77 0.0017 31.0 15.3 25 191-215 62-86 (167)
39 PRK14472 F0F1 ATP synthase sub 73.7 95 0.0021 30.5 14.8 13 192-204 71-83 (175)
40 KOG3054 Uncharacterized conser 72.9 27 0.00059 37.1 9.9 12 412-423 262-273 (299)
41 KOG2002 TPR-containing nuclear 72.8 1.1E+02 0.0024 38.1 16.1 39 167-210 759-797 (1018)
42 PF12037 DUF3523: Domain of un 72.7 1.5E+02 0.0032 32.2 18.6 25 137-161 52-76 (276)
43 KOG1144 Translation initiation 72.3 24 0.00053 42.7 10.3 23 206-228 214-236 (1064)
44 PF15236 CCDC66: Coiled-coil d 71.7 1.1E+02 0.0024 30.5 13.7 19 190-208 53-71 (157)
45 PRK14474 F0F1 ATP synthase sub 71.5 1.4E+02 0.0029 31.4 14.8 11 193-203 59-69 (250)
46 PRK11637 AmiB activator; Provi 68.2 2E+02 0.0044 32.0 21.3 31 167-197 104-135 (428)
47 PF15236 CCDC66: Coiled-coil d 68.0 1.3E+02 0.0029 29.9 13.4 10 126-135 33-42 (157)
48 PF09726 Macoilin: Transmembra 67.6 2.2E+02 0.0047 34.5 17.0 15 388-402 597-611 (697)
49 PRK13428 F0F1 ATP synthase sub 66.5 1.5E+02 0.0032 33.7 14.8 13 192-204 54-66 (445)
50 CHL00118 atpG ATP synthase CF0 63.7 1.4E+02 0.0031 28.7 14.7 11 194-204 77-87 (156)
51 PLN03086 PRLI-interacting fact 63.4 36 0.00077 40.0 9.4 19 447-465 201-219 (567)
52 PRK13428 F0F1 ATP synthase sub 63.1 1.3E+02 0.0027 34.3 13.4 17 592-608 384-400 (445)
53 TIGR03321 alt_F1F0_F0_B altern 62.4 2E+02 0.0043 29.9 14.8 12 193-204 59-70 (246)
54 PF13904 DUF4207: Domain of un 61.7 2.2E+02 0.0048 30.2 15.4 8 154-161 90-97 (264)
55 PF12128 DUF3584: Protein of u 61.2 4.5E+02 0.0099 33.6 36.1 34 327-360 773-806 (1201)
56 CHL00019 atpF ATP synthase CF0 60.0 1.8E+02 0.004 28.7 12.9 13 192-204 77-89 (184)
57 KOG4715 SWI/SNF-related matrix 59.2 2.4E+02 0.0052 31.3 13.9 28 254-281 289-316 (410)
58 KOG2072 Translation initiation 56.1 4.9E+02 0.011 32.4 20.0 47 148-194 677-724 (988)
59 TIGR03319 YmdA_YtgF conserved 55.1 4E+02 0.0086 31.1 17.9 12 441-452 306-317 (514)
60 PF04747 DUF612: Protein of un 53.9 1.2E+02 0.0027 34.2 10.9 39 213-251 84-123 (510)
61 KOG4661 Hsp27-ERE-TATA-binding 53.7 1.2E+02 0.0026 36.0 11.1 13 340-352 729-741 (940)
62 PTZ00491 major vault protein; 53.4 1.4E+02 0.0029 36.9 12.1 26 213-238 675-700 (850)
63 PRK06568 F0F1 ATP synthase sub 53.1 2.4E+02 0.0052 27.9 15.2 20 184-204 50-69 (154)
64 PF12128 DUF3584: Protein of u 52.8 6.1E+02 0.013 32.5 23.6 25 335-359 767-791 (1201)
65 KOG0742 AAA+-type ATPase [Post 52.8 4.3E+02 0.0094 30.8 17.3 61 557-617 469-540 (630)
66 KOG3654 Uncharacterized CH dom 52.1 78 0.0017 36.9 9.3 33 450-488 615-648 (708)
67 PF10168 Nup88: Nuclear pore c 51.1 5.2E+02 0.011 31.5 16.4 22 199-220 601-622 (717)
68 PRK09174 F0F1 ATP synthase sub 50.3 3E+02 0.0065 28.2 15.2 13 192-204 106-118 (204)
69 PRK02292 V-type ATP synthase s 50.3 2E+02 0.0043 28.4 11.0 23 485-507 149-173 (188)
70 KOG2404 Fumarate reductase, fl 49.0 1.3E+02 0.0028 33.8 10.1 100 521-627 258-394 (477)
71 PRK13455 F0F1 ATP synthase sub 47.9 2.9E+02 0.0063 27.3 12.9 12 193-204 81-92 (184)
72 PRK07352 F0F1 ATP synthase sub 47.7 2.8E+02 0.0061 27.1 14.8 13 192-204 72-84 (174)
73 PRK08475 F0F1 ATP synthase sub 47.2 2.9E+02 0.0063 27.1 12.9 9 194-202 77-85 (167)
74 TIGR01069 mutS2 MutS2 family p 46.9 3.3E+02 0.0071 33.3 14.1 8 460-467 747-754 (771)
75 PRK06569 F0F1 ATP synthase sub 46.5 2.1E+02 0.0045 28.5 10.3 6 222-227 40-45 (155)
76 KOG2441 mRNA splicing factor/p 44.2 1.2E+02 0.0027 34.4 9.1 46 283-328 358-403 (506)
77 PF07946 DUF1682: Protein of u 44.1 92 0.002 33.7 8.2 15 97-113 187-201 (321)
78 KOG2891 Surface glycoprotein [ 42.8 5E+02 0.011 28.6 14.3 17 216-232 335-351 (445)
79 KOG4691 Uncharacterized conser 41.1 4.4E+02 0.0095 27.5 13.3 36 138-178 61-96 (227)
80 PRK13460 F0F1 ATP synthase sub 41.0 3.6E+02 0.0078 26.4 14.7 11 194-204 71-81 (173)
81 PRK14473 F0F1 ATP synthase sub 40.7 3.4E+02 0.0075 26.2 14.8 13 192-204 61-73 (164)
82 PTZ00491 major vault protein; 39.8 8.5E+02 0.018 30.5 17.0 22 217-238 721-742 (850)
83 COG1196 Smc Chromosome segrega 39.3 9.3E+02 0.02 30.8 23.6 8 38-45 53-60 (1163)
84 PF07046 CRA_rpt: Cytoplasmic 39.1 1.2E+02 0.0025 24.1 5.7 21 260-280 10-30 (42)
85 PF15346 ARGLU: Arginine and g 38.5 4.1E+02 0.0089 26.4 15.9 54 143-203 10-63 (149)
86 KOG3654 Uncharacterized CH dom 38.3 2.1E+02 0.0046 33.6 10.0 12 100-111 343-354 (708)
87 cd03404 Band_7_HflK Band_7_Hfl 37.3 2.5E+02 0.0054 28.9 9.9 6 26-31 28-33 (266)
88 COG5269 ZUO1 Ribosome-associat 37.1 3.4E+02 0.0073 29.8 10.7 7 212-218 227-233 (379)
89 KOG3540 Beta amyloid precursor 36.9 1.5E+02 0.0033 34.5 8.6 88 331-418 347-443 (615)
90 PF07946 DUF1682: Protein of u 35.3 1.7E+02 0.0036 31.8 8.5 10 191-200 251-260 (321)
91 KOG0336 ATP-dependent RNA heli 34.7 36 0.00079 38.8 3.4 33 21-53 215-249 (629)
92 PRK08404 V-type ATP synthase s 34.3 3.7E+02 0.008 24.7 10.7 22 260-281 59-80 (103)
93 PF15346 ARGLU: Arginine and g 34.2 4.8E+02 0.01 25.9 13.2 6 233-238 93-98 (149)
94 PF07349 DUF1478: Protein of u 33.2 39 0.00084 33.4 2.9 39 522-560 35-74 (162)
95 PRK07353 F0F1 ATP synthase sub 32.3 4.2E+02 0.0091 24.7 12.9 10 194-203 60-69 (140)
96 PF00769 ERM: Ezrin/radixin/mo 32.0 6.2E+02 0.014 26.6 14.4 26 340-365 179-205 (246)
97 PRK13453 F0F1 ATP synthase sub 31.4 5.2E+02 0.011 25.4 13.2 11 194-204 73-83 (173)
98 PF11208 DUF2992: Protein of u 30.9 2E+02 0.0042 27.9 7.2 9 182-190 72-80 (132)
99 PRK00106 hypothetical protein; 30.9 9.6E+02 0.021 28.4 17.7 6 397-402 285-290 (535)
100 PLN02316 synthase/transferase 30.8 1.4E+02 0.0031 37.6 7.9 16 501-516 689-704 (1036)
101 TIGR03738 PRTRC_C PRTRC system 29.9 33 0.00072 29.6 1.7 19 15-33 12-31 (66)
102 PF06098 Radial_spoke_3: Radia 29.3 7.6E+02 0.016 27.0 12.1 33 126-160 105-137 (291)
103 PF07046 CRA_rpt: Cytoplasmic 29.2 1.6E+02 0.0034 23.4 5.0 11 271-281 27-37 (42)
104 KOG1363 Predicted regulator of 29.2 2.6E+02 0.0056 32.3 9.0 13 48-60 92-104 (460)
105 PRK03963 V-type ATP synthase s 29.0 5.7E+02 0.012 25.2 11.0 70 224-293 9-78 (198)
106 KOG4722 Zn-finger protein [Gen 28.4 9.9E+02 0.022 27.8 13.8 18 406-423 536-554 (672)
107 PF06991 Prp19_bind: Splicing 27.1 5.8E+02 0.013 27.6 10.7 14 112-125 26-39 (276)
108 cd03401 Band_7_prohibitin Band 27.0 1.4E+02 0.0031 29.0 5.8 7 151-157 100-106 (196)
109 KOG2357 Uncharacterized conser 26.9 3E+02 0.0065 31.6 8.7 13 121-134 304-316 (440)
110 PF14454 Prok_Ub: Prokaryotic 25.9 43 0.00094 28.7 1.7 20 15-34 13-33 (65)
111 KOG2141 Protein involved in hi 25.3 3.7E+02 0.008 33.0 9.5 171 365-571 312-483 (822)
112 PF07271 Cytadhesin_P30: Cytad 25.1 1E+02 0.0022 33.3 4.5 17 235-251 95-111 (279)
113 smart00582 RPR domain present 25.0 3.7E+02 0.008 24.3 7.7 50 534-583 37-87 (121)
114 KOG0994 Extracellular matrix g 24.4 1.7E+03 0.038 29.3 18.2 17 164-180 1516-1532(1758)
115 KOG2689 Predicted ubiquitin re 24.0 3.6E+02 0.0078 29.4 8.3 11 369-379 208-218 (290)
116 PRK01558 V-type ATP synthase s 23.9 7.6E+02 0.016 24.9 11.1 26 485-510 159-189 (198)
117 PRK13454 F0F1 ATP synthase sub 23.6 7.4E+02 0.016 24.7 13.2 94 164-260 56-149 (181)
118 PRK01005 V-type ATP synthase s 23.6 8.3E+02 0.018 25.2 13.1 9 255-263 72-80 (207)
119 KOG0612 Rho-associated, coiled 22.9 1.8E+03 0.039 29.0 22.1 15 68-82 353-367 (1317)
120 KOG1087 Cytosolic sorting prot 22.7 5.1E+02 0.011 30.1 9.8 39 526-564 34-74 (470)
121 KOG0994 Extracellular matrix g 22.2 1.9E+03 0.041 29.0 19.3 18 338-355 1699-1716(1758)
122 PRK13461 F0F1 ATP synthase sub 22.0 7.1E+02 0.015 23.9 14.7 11 194-204 60-70 (159)
123 KOG2689 Predicted ubiquitin re 22.0 1.1E+03 0.023 26.0 12.8 17 222-238 119-135 (290)
124 PRK00106 hypothetical protein; 21.6 1.4E+03 0.03 27.1 18.3 12 530-541 373-384 (535)
125 PRK09173 F0F1 ATP synthase sub 21.3 7.3E+02 0.016 23.8 15.1 13 192-204 55-67 (159)
126 PF12297 EVC2_like: Ellis van 21.0 1.3E+03 0.029 26.6 14.1 64 148-216 195-261 (429)
127 KOG1999 RNA polymerase II tran 20.5 1E+02 0.0022 38.5 3.8 51 96-146 61-112 (1024)
128 TIGR00570 cdk7 CDK-activating 20.3 5.7E+02 0.012 28.2 9.1 37 134-173 102-138 (309)
No 1
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=100.00 E-value=5.1e-98 Score=804.38 Aligned_cols=566 Identities=36% Similarity=0.550 Sum_probs=482.2
Q ss_pred CCccccccCCCCccCccccCCCCCCCHHHHHHHHHHHHHHhccCC-CCcccccccccccccCccccccccceEEEecccc
Q 006315 1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREISTGKSVESNARAFVIRVSDDE 79 (651)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~dp~p~w~~~~~~~e~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~fv~r~~~~~ 79 (651)
|| +.|+..||.+++|++|||+|+|+|.||++++.|.+.+||+++ +|+|+|.++-+. ++++..|||.|++|+
T Consensus 1 e~-~pl~ep~p~s~~~~~id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~d-------~~~~~~~~~~~~e~e 72 (591)
T KOG2412|consen 1 EG-IPLEEPCPKSVDGISIDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVRD-------GRRGGGFVMHVSEDE 72 (591)
T ss_pred CC-CCCCCCCCCCcccccCCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHHh-------hhccCCccchhHHHH
Confidence 56 789999999999999999999999999999999999999999 999999887776 678999999999999
Q ss_pred ccccc-----cccccccccCccccccceecccccccCCCCCccccccCCcc-ccccccccchhhhHHhhhhhccccHHHH
Q 006315 80 LENDN-----ERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGES-YLMDEVGLADGALVELTHQHQLGVKEEI 153 (651)
Q Consensus 80 ~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~e~~~~~~~~~~e~~ 153 (651)
++++. +...++.+++.+++|++|+|+.||++|.++++ +++++ +.|++.++..+. .++|++.+..++
T Consensus 73 ~~~~~~~~sq~~l~e~~~s~~~~a~t~m~~~qL~~~~~~~~~----~~~e~~~~l~~L~~~~~~----~~q~~~~~~~~~ 144 (591)
T KOG2412|consen 73 MESDEGEESQDELEEEDHSQKCTAGTRMACAQLYLSDESDEE----FDHENEQDLNKLGLKESA----INQRQTEIKSDI 144 (591)
T ss_pred HHhcccccccCcccCcchhHhhhccchhHHHHHHHHHHhhhh----hhcchhhhHHHHHHhhcc----chhhhHhHHhhh
Confidence 98765 55678899999999999999999999988777 77788 888999999888 499999999999
Q ss_pred HHHHHHHHHHHHh-HhhhhHHHHHhhHHHHHhHHHHhhhccHHHHHHHHHHHhhhhhHHhhhHHHHhHHHHHHhhhHHHH
Q 006315 154 RNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAY 232 (651)
Q Consensus 154 r~~~~~~e~~~~~-e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~~ae~~~~~~~~~qr~~e~~~q~~~r~~r~~aa~ 232 (651)
|.++..+..-..+ ++.+..+....++++.++|.|+.+++ .++|+++...+|+|++.++|.+++.+||.+|++++++..
T Consensus 145 ~~ki~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr 223 (591)
T KOG2412|consen 145 RAKILNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKR 223 (591)
T ss_pred hhhhhcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999887765555 78888999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcc
Q 006315 233 EEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSS 312 (651)
Q Consensus 233 eea~r~e~~~~ee~~~q~~ak~eae~~a~~~ae~~~k~a~ea~~k~a~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (651)
+||.|+++++|||+.+++...++++++++.|++|+++ |.+.|++.++.+.+...- ++...+.+ .+.
T Consensus 224 ~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekq---eee~ke~e~~~~k~~q~~-~~~eek~a----------~qk 289 (591)
T KOG2412|consen 224 EEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQ---EEERKEAEEQAEKEVQDP-KAHEEKLA----------EQK 289 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCc-hhcccccc----------ccc
Confidence 9999999999999999999999999999999987662 223333332221111100 00001111 111
Q ss_pred cccccccCCCCCCcchhhhhhHHhhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCcchh-HH
Q 006315 313 VIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN-VR 391 (651)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~sal~~~~~R~k~LKel~~~~~~lks~lkk~~~~~kRqI~~kIGQLTns~~Q-I~ 391 (651)
...|.+...+..|-..--++...++.+.+....-+.++..++++ -..+++|+||+.|||||++..| |.
T Consensus 290 ~~~~~~~~~~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~-----------~~~~~kr~in~~~~qis~~~~q~L~ 358 (591)
T KOG2412|consen 290 AVIEKVTTSSASDSQMFWNSQDAIAQSKLDLVNPILKKDEELKN-----------YNQSLKRAINPPFSQISKSNGQVLR 358 (591)
T ss_pred cccccccCCchhHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHH-----------HHHHHHhhcCCChhhhhhccHHHHH
Confidence 11222222222222222233456677777777777666555444 4458899999999999999998 99
Q ss_pred HHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHhhccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceee
Q 006315 392 TKASELVKILNNPL-----CPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYT 463 (651)
Q Consensus 392 ~Is~eL~~lL~~~q-----lP~~i~Ln~lAKaIVsQaEt~---~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~l 463 (651)
.|++.|..++++.+ +.+.||+|+|||++|+|+|++ +|.+|||||.|++.||++||+|+|+|||||||+|||+
T Consensus 359 qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~l~KkCP~~ 438 (591)
T KOG2412|consen 359 QIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLARLHKKCPYV 438 (591)
T ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHHHHhcCCcc
Confidence 99999999998743 458899999999999999994 6789999999999999999999999999999999999
Q ss_pred ccccccccccccccHHHHHHHcCccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC----CCCCCCCcchHHHHHHHH
Q 006315 464 VPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP----GVQNAHGLKEGWAWLARF 538 (651)
Q Consensus 464 VP~~~~~~k~~~qSeEey~K~mGYr~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~----g~~nP~gi~~~WkWLARI 538 (651)
||||++. ++|.|.|+|||+. ++|+||..+.|++||+||+||||||++++.| +.-||||+.+||.|||||
T Consensus 439 VPf~~~~------~~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAAIi~l~~p~~~~~~~hpf~i~~gW~wLA~i 512 (591)
T KOG2412|consen 439 VPFHIVN------STEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAAIIQLDIPVGNATNVHPFGINHGWAWLARI 512 (591)
T ss_pred ccccccC------cHHHHHHhhcccccccccccccchHHHHhHhHHHHHHHHHHhcccccCCCCCCcchhhcccHHHHHH
Confidence 9999874 3799999999996 6789999999999999999999999999986 345899999999999999
Q ss_pred hCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCchhHHHHHHHHHHHHhcccccCCC
Q 006315 539 LNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPE 615 (651)
Q Consensus 539 LN~~P~~~ita~vL~afLEvAG~~L~~~YG~QF~KLL~lI~~d~~p~L~~~~~p~a~~~v~rLe~~Led~~~l~ePE 615 (651)
||+.|.+++||++|.+||++||+.|++.||+||.|||.+|.++|+|++.++++.|..++.+.|+.|| |+++...|+
T Consensus 513 ln~~p~~~~tatll~s~Lq~aG~~L~q~Yg~Qf~Klli~i~E~y~~r~~a~~~~g~~rl~ill~~~l-~~q~~~~~~ 588 (591)
T KOG2412|consen 513 LNKIPLLDTTATLLNSFLQTAGFGLLQRYGSQFLKLLILIREHYLPRLAAKKDTGDLRLRILLEAWL-DRQYLKEPE 588 (591)
T ss_pred hCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHH-Hhhhhcccc
Confidence 9999999999999999999999999999999999999999999999999998777789999999999 888888887
No 2
>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT). This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm []. ; GO: 0016973 poly(A)+ mRNA export from nucleus, 0005643 nuclear pore; PDB: 3PEV_B 3RRN_B 3PEU_B 3RRM_B.
Probab=100.00 E-value=1.8e-60 Score=484.34 Aligned_cols=230 Identities=35% Similarity=0.550 Sum_probs=182.9
Q ss_pred HHHHHHHHhhh---ccccccccccccccccccccccccCcchhHHHHHHHHHHHhcC--------------CCChHHHHH
Q 006315 350 KLKELDEENQS---LKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNN--------------PLCPQSISL 412 (651)
Q Consensus 350 ~LKel~~~~~~---lks~lkk~~~~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~~--------------~qlP~~i~L 412 (651)
+++++++.+.. -++.+|+.++++||+||++|||||++.+||++|+++|.++|++ +++++.|+|
T Consensus 4 ~i~~~k~~~~~~~~~d~~lKk~~~~~kr~I~~~vgQls~~~~qi~~i~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~l 83 (256)
T PF07817_consen 4 KIKQIKQALKEPVKSDPSLKKLRFDLKRKINPKVGQLSNSSSQINRIINQISNLLSGQPVKSNDLQQSKNDHPLAYKYLL 83 (256)
T ss_dssp HHHHHHHHTHHHHHS-HHHHHHHHHHHHHHCCHHHC--SBHHHHHHHHHHHHHH----------HHTTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHhhhhCcCcHhhccCcHHHHHHHHHHHHHHhhhhhhchhhhhhhccCCchHHHHHH
Confidence 34444445444 2346889999999999999999999999999999999999643 234577899
Q ss_pred HHHHHHHHhhccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCccc
Q 006315 413 ATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE 489 (651)
Q Consensus 413 n~lAKaIVsQaEt~---~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~ 489 (651)
|+|||+||+|||++ ++++|||+|.|++.||+.||+|+|+||||||++|||+||+|+++. .++++|+|+++|||+.
T Consensus 84 ~~lAk~iv~Q~e~ev~~~~~~A~PlA~v~~~l~~~~p~~~dillA~l~k~Cp~~vP~~~~~~--~~~~~e~~~k~lGyk~ 161 (256)
T PF07817_consen 84 NFLAKKIVSQAETEVSANPESAFPLARVAVQLWSQHPEFGDILLARLHKKCPYLVPKYPGFT--CDQSTEEYRKRLGYKR 161 (256)
T ss_dssp HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHHHHHSTCHHHHHHHHHHHH-GGGG----T-------SSHHHHHHTT--B
T ss_pred HHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHcCCcHHHHHHHHHHHcCceeEeecCccc--CCCCHHHHHHHcCCcc
Confidence 99999999999995 678999999999999999999999999999999999999998764 3568899999999999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHH
Q 006315 490 EDGKIESLENYLSRLKSYMRLYAALIQTEIPGV-Q--NAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKK 566 (651)
Q Consensus 490 ~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~g~-~--nP~gi~~~WkWLARILN~~P~~~ita~vL~afLEvAG~~L~~~ 566 (651)
+||+||++++|++||+||++|||||+++++++. . ||||++++|+|||||||++|.+++|++||++||++||++|+++
T Consensus 162 ~~~~~E~~~~y~~Rm~Gi~~lyaAi~~~~~~~~~~~~~p~~~~~~W~wlAr~lN~~p~~~~~~~lL~~~Le~ag~~l~~~ 241 (256)
T PF07817_consen 162 DDGGWESEDQYLKRMTGIIRLYAAIIQTPPPKGQKTSNPHGLEHGWRWLARILNLPPAPNITATLLHSFLEVAGFRLLQI 241 (256)
T ss_dssp -TTSB--HHHHHHHHHHHHHHHHHHHHS---CCCCTT-SS-THHHHHHHHHHHCS-CC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCCcHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 877799999999999999999999999998743 2 7999999999999999998888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006315 567 YKSQFRKILDNIYDN 581 (651)
Q Consensus 567 YG~QF~KLL~lI~~d 581 (651)
||+||.|||.+|.++
T Consensus 242 Yg~Qf~Kll~~i~~~ 256 (256)
T PF07817_consen 242 YGRQFVKLLQLISEH 256 (256)
T ss_dssp HTHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999864
No 3
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.55 E-value=0.00099 Score=75.00 Aligned_cols=69 Identities=25% Similarity=0.355 Sum_probs=44.2
Q ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006315 213 RDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAA 288 (651)
Q Consensus 213 r~~e~~~q~~~r~~r~~aa~eea~r~e~~~~ee~~~q~~ak~eae~~a~~~ae~~~k~a~ea~~k~a~e~~e~e~~ 288 (651)
+..+.++++|.++.|. +.+|++|+...+++++..||+.|++.|+ ++|++|++.++++|++.-.++.|.+
T Consensus 216 ~~~~e~kr~Eaerk~~--~~qEe~Rqk~d~~~~~~eqekiR~~eek-----qeee~ke~e~~~~k~~q~~~~~eek 284 (591)
T KOG2412|consen 216 KERSEEKREEAERKRR--AHQEELRQKEDEEAELQEQEKIRAEEEK-----QEEERKEAEEQAEKEVQDPKAHEEK 284 (591)
T ss_pred HHHHHhhhhhhHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCchhcccc
Confidence 3444566666655543 2356666655666777778888887663 6677788888877777665555444
No 4
>PTZ00121 MAEBL; Provisional
Probab=97.54 E-value=0.0064 Score=74.57 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 006315 502 SRLKSYMRLYAALIQT 517 (651)
Q Consensus 502 kRMtGI~rLYAAIiqt 517 (651)
+++...+.-|.+|+..
T Consensus 1798 QqV~dEVdkY~AIIeq 1813 (2084)
T PTZ00121 1798 KKIKDIFDNFANIIEG 1813 (2084)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555543
No 5
>PTZ00121 MAEBL; Provisional
Probab=97.46 E-value=0.0023 Score=78.16 Aligned_cols=8 Identities=25% Similarity=0.609 Sum_probs=4.3
Q ss_pred hhHHHHHH
Q 006315 498 ENYLSRLK 505 (651)
Q Consensus 498 ~~YlkRMt 505 (651)
+.|..|=.
T Consensus 1922 ~eY~~Rdv 1929 (2084)
T PTZ00121 1922 DEYIKRDA 1929 (2084)
T ss_pred HHHhhcch
Confidence 55665543
No 6
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.02 Score=66.99 Aligned_cols=39 Identities=18% Similarity=0.361 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHHHHhHhhhhHHHHHhhHHHHHhHHHHhh
Q 006315 148 GVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDR 190 (651)
Q Consensus 148 ~~~e~~r~~~~~~e~~~~~e~~~~~~~~~~~~k~~~~r~e~~r 190 (651)
+=|.|+..++.+|| +|-||.++.+++.|++++.|||-+|
T Consensus 324 kGqaELerRRq~le----eqqqreree~eqkEreE~ekkerer 362 (1118)
T KOG1029|consen 324 KGQAELERRRQALE----EQQQREREEVEQKEREEEEKKERER 362 (1118)
T ss_pred hhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888 7777778889999999999988776
No 7
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.85 E-value=0.03 Score=65.47 Aligned_cols=54 Identities=39% Similarity=0.481 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 006315 228 SDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAK-RAALEAEKRAAKE 281 (651)
Q Consensus 228 ~~aa~eea~r~e~~~~ee~~~q~~ak~eae~~a~~~ae~~~-k~a~ea~~k~a~e 281 (651)
.+.++-|.+|||-..|+.++-.|++++++||++++|+||++ |+..|.+.+.+.+
T Consensus 930 qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e 984 (1259)
T KOG0163|consen 930 QELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALE 984 (1259)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46666666777777777777788888999999999988766 4444444444433
No 8
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=96.60 E-value=0.3 Score=54.06 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=6.3
Q ss_pred ccccccccchhhh
Q 006315 126 YLMDEVGLADGAL 138 (651)
Q Consensus 126 ~l~~~~~~~~~~l 138 (651)
-.++-+=+.++..
T Consensus 48 ~~i~AVmvD~~~v 60 (387)
T PRK09510 48 SVIDAVMVDPGAV 60 (387)
T ss_pred ccccceecChHHH
Confidence 3444444555544
No 9
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.44 E-value=0.18 Score=59.48 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=7.8
Q ss_pred HHHcCcccCCCcc
Q 006315 482 YKTIGYREEDGKI 494 (651)
Q Consensus 482 ~K~mGYr~~dG~~ 494 (651)
.+.|||--=||.|
T Consensus 1168 k~gmWyaHFdGq~ 1180 (1259)
T KOG0163|consen 1168 KRGMWYAHFDGQW 1180 (1259)
T ss_pred ccceEEEecCcHH
Confidence 3457777656654
No 10
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.40 E-value=0.038 Score=67.43 Aligned_cols=10 Identities=30% Similarity=0.973 Sum_probs=6.7
Q ss_pred CCHHHHHHHH
Q 006315 25 WSFDALLSEL 34 (651)
Q Consensus 25 w~~~~~~~e~ 34 (651)
||||-++-||
T Consensus 227 WSLG~ILYEL 236 (1021)
T PTZ00266 227 WALGCIIYEL 236 (1021)
T ss_pred HHHHHHHHHH
Confidence 6777666665
No 11
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=96.27 E-value=0.57 Score=50.64 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=5.4
Q ss_pred ccccccccchhhh
Q 006315 126 YLMDEVGLADGAL 138 (651)
Q Consensus 126 ~l~~~~~~~~~~l 138 (651)
-+|+-+=+.+++.
T Consensus 48 ~vi~AVmVDpgav 60 (387)
T COG3064 48 SVIDAVMVDPGAV 60 (387)
T ss_pred ceeeeeEeCcHHH
Confidence 3444444444433
No 12
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=96.07 E-value=0.13 Score=48.90 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=114.6
Q ss_pred cccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhCc-cHHHHH
Q 006315 374 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP-QVMDIL 452 (651)
Q Consensus 374 RqI~~kIGQLTns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~P-ef~DIL 452 (651)
|+|+--+|+|| ...+..++.+|.++.... ....+..+++.|+..+... |..+-.+|.++..|-..+| +|+..|
T Consensus 2 r~v~~~lnklt--~~n~~~~~~~l~~~~~~~---~~~~~~~i~~~i~~~a~~~-~~~~~~~a~l~~~l~~~~~~~f~~~l 75 (209)
T PF02854_consen 2 RKVRGILNKLT--PSNFESIIDELIKLNWSD---DPETLKEIVKLIFEKAVEE-PNFSPLYARLCAALNSRFPSEFRSLL 75 (209)
T ss_dssp HHHHHHHHHCS--STTHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHCC--HHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHhhhhhcC-chHHHHHHHHHHHHhccchhhHHHHH
Confidence 56777788888 456667777777777542 2345777788887776553 2467788889999999999 999988
Q ss_pred HHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHH
Q 006315 453 LGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGW 532 (651)
Q Consensus 453 LArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~g~~nP~gi~~~W 532 (651)
+.+++...-...+.. .. + +....+..|+.|++++.+-+..... .+....-
T Consensus 76 l~~~~~~f~~~~~~~--------~~-~---------------~~~~~~~~~~~~~~~fl~eL~~~~v------v~~~~i~ 125 (209)
T PF02854_consen 76 LNRCQEEFEERYSNE--------EL-E---------------ENRQSSKQRRRGNIRFLAELFNFGV------VSEKIIF 125 (209)
T ss_dssp HHHHHHHHHHHT-HH--------HH-H---------------HHHHHHHHHHHHHHHHHHHHHHTTS------SCHHHHH
T ss_pred HHHHHHHHHHhhhhh--------hH-H---------------HHHHHHHHHHhhhhhHHHhhHhhcc------ccchhHH
Confidence 887765542211000 00 0 1234667899999999999987542 2222333
Q ss_pred HHHHHHhCCC------CCccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 006315 533 AWLARFLNAL------PANIYTAVALNAFLQLAGFALF--KKYKSQFRKILDNIYDNFL 583 (651)
Q Consensus 533 kWLARILN~~------P~~~ita~vL~afLEvAG~~L~--~~YG~QF~KLL~lI~~d~~ 583 (651)
..+..++... |.......++..+|..+|..|. ......+..++..+.....
T Consensus 126 ~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~~~~~~~~~~ 184 (209)
T PF02854_consen 126 DILRELLSDGTDECQPPPDEENIECLCTLLKTCGKKLENSEESPKALDEIFERLQKYAN 184 (209)
T ss_dssp HHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Confidence 3444444432 2234568888999999999999 6666666666666555444
No 13
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=95.71 E-value=0.59 Score=51.84 Aligned_cols=8 Identities=50% Similarity=0.509 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 006315 260 AKLRAEEA 267 (651)
Q Consensus 260 a~~~ae~~ 267 (651)
|+++++++
T Consensus 183 a~k~a~~~ 190 (387)
T PRK09510 183 AKKKAEAE 190 (387)
T ss_pred HHHHHHHH
Confidence 33444433
No 14
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.11 Score=61.04 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=7.3
Q ss_pred hhHHHHHhHHHHhh
Q 006315 177 QVEKDRDMRREMDR 190 (651)
Q Consensus 177 ~~~k~~~~r~e~~r 190 (651)
|-+-|..---|+||
T Consensus 318 rkeNy~kGqaELer 331 (1118)
T KOG1029|consen 318 RKENYEKGQAELER 331 (1118)
T ss_pred hHHhHhhhhHHHHH
Confidence 34444445556666
No 15
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=95.67 E-value=1.9 Score=46.75 Aligned_cols=10 Identities=50% Similarity=0.471 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 006315 245 EKIRQEKVKA 254 (651)
Q Consensus 245 e~~~q~~ak~ 254 (651)
.+..-++||.
T Consensus 200 Akaa~ekAk~ 209 (387)
T COG3064 200 AKAAAEKAKA 209 (387)
T ss_pred HHHHHHHhhh
Confidence 3333333333
No 16
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.58 E-value=0.14 Score=62.69 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 006315 499 NYLSRLKS 506 (651)
Q Consensus 499 ~YlkRMtG 506 (651)
.|.+-|..
T Consensus 779 ~~~~~~~~ 786 (1021)
T PTZ00266 779 MYKEAVNP 786 (1021)
T ss_pred HHhhhccc
Confidence 34444433
No 17
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=94.02 E-value=1.5 Score=41.82 Aligned_cols=168 Identities=19% Similarity=0.215 Sum_probs=105.9
Q ss_pred cccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhCccHHHHHH
Q 006315 374 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILL 453 (651)
Q Consensus 374 RqI~~kIGQLTns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~Pef~DILL 453 (651)
++|+.-+|.|| .+.+..++.+|..+..+. + -....+++.|+..+..+ |...-.+|.++..+...+|+|+..|+
T Consensus 2 ~~v~~~lnkLs--~~n~~~~~~~l~~~~~~~--~--~~~~~l~~~i~~~~~~~-~~~~~~ya~L~~~l~~~~~~f~~~ll 74 (200)
T smart00543 2 KKVKGLINKLS--PSNFESIIKELLKLNNSD--K--NLRKYILELIFEKAVEE-PNFIPAYARLCALLNAKNPDFGSLLL 74 (200)
T ss_pred hHHHHHHhhCC--HHHHHHHHHHHHHHHccC--H--HHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788887 468888899998888652 2 24555666666666553 24567778888888878887777776
Q ss_pred HHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHH
Q 006315 454 GEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWA 533 (651)
Q Consensus 454 Arf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~g~~nP~gi~~~Wk 533 (651)
..++..- -... + +......+|..|.+++.+-+..... .+....-.
T Consensus 75 ~~~~~~f--~~~~------------e---------------~~~~~~~~~~~~~i~fl~eL~~~~~------i~~~~i~~ 119 (200)
T smart00543 75 ERLQEEF--EKGL------------E---------------SEEESDKQRRLGLVRFLGELYNFQV------LTSKIILE 119 (200)
T ss_pred HHHHHHH--HHHH------------H---------------HHHHHhhhhHHhHHHHHHHHHHccc------CcHHHHHH
Confidence 6654331 0000 0 0112445788999999998876432 11222333
Q ss_pred HHHHHhCCC--C---CccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 006315 534 WLARFLNAL--P---ANIYTAVALNAFLQLAGFALF-KKYKSQFRKILDNIYDNFL 583 (651)
Q Consensus 534 WLARILN~~--P---~~~ita~vL~afLEvAG~~L~-~~YG~QF~KLL~lI~~d~~ 583 (651)
.+..+++.. | .......++..+|..+|..|. .....-+..++..+...+.
T Consensus 120 ~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~~~~~~~~~~~l~~l~~~~~ 175 (200)
T smart00543 120 LLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYLL 175 (200)
T ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcCcccHHHHHHHHHHHHHHHh
Confidence 444444431 1 124678899999999999999 6666666666666555443
No 18
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.24 E-value=2.7 Score=50.06 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=44.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCcchhHHHHHHHHHHHhc
Q 006315 334 VRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILN 402 (651)
Q Consensus 334 ~~~~~sal~~~~~R~k~LKel~~~~~~lks~lkk~~~~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~ 402 (651)
+.++.+|+-..+.++.. -|-.++. +|-.|=.-+|+-||+|...-+||..--.+|...-..|.+++.
T Consensus 592 L~~aL~amqdk~~~LE~--sLsaEtr-iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLEN--SLSAETR-IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHH--hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555544431 1211111 455566788999999999999998877888887777777775
No 19
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=8.5 Score=43.77 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=39.7
Q ss_pred hhHHhhhhhcc-ccHHHHHHHHHHHHHHHHhHhhhhHHHHHhhHHHHHhHHHHhhhccHHHHH
Q 006315 137 ALVELTHQHQL-GVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQR 198 (651)
Q Consensus 137 ~l~e~~~~~~~-~~~e~~r~~~~~~e~~~~~e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr 198 (651)
+|-|+++-.+- .|-|-+|.+-..+..++..+.+.-.+..+...-++-.--..|+|...+.|.
T Consensus 84 Alrein~s~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qa 146 (630)
T KOG0742|consen 84 ALREINHSPYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEET 146 (630)
T ss_pred HHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 46677765554 556677777777777777777766666666666665555556655555544
No 20
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=92.27 E-value=2.7 Score=49.36 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=11.6
Q ss_pred ccCCCccccCCC---CCCCccccccc
Q 006315 611 LEEPEGRTLQAP---PLSSTLVPEAD 633 (651)
Q Consensus 611 l~ePEG~~m~~~---~~s~~~~~~~~ 633 (651)
-+.|.|-.++.| +.|....|...
T Consensus 768 sp~~d~~~~p~t~pt~~~p~~lp~s~ 793 (811)
T KOG4364|consen 768 SPDKDGKRLPKTIPTFFSPRCLPPST 793 (811)
T ss_pred CCCCccccCCCCCCcccCcccCCCcC
Confidence 455666666653 33444444433
No 21
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=91.42 E-value=3.5 Score=47.19 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=31.0
Q ss_pred ccccceEEEeccccccccccccccccccCccccccceecccccccCCCCCccccccCC--ccccccccccchh
Q 006315 66 SNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGG--ESYLMDEVGLADG 136 (651)
Q Consensus 66 ~~~~~fv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 136 (651)
+.++-||+|+=|... +..|.+|=+.|.+..+-||=.++.- .+|||..-||.+.
T Consensus 47 ~~~~y~ii~~vd~~~------------------~~~~~ADi~~ig~~a~vdhI~nlrrIiagyl~~aygY~~~ 101 (489)
T PF05262_consen 47 SYGRYYIIHAVDPEE------------------KKKLDADIFIIGENARVDHINNLRRIIAGYLEAAYGYSDE 101 (489)
T ss_pred ccCcEEEEEecCccc------------------ccCCCCcEEEEcCCCCccHHHHHHHHHHHHHHHhcCCChh
Confidence 448889999865543 3334555566666666665444432 3366666666543
No 22
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=90.69 E-value=3.7 Score=48.33 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006315 234 EAKRKERALQEEKIRQEKVKAEAE 257 (651)
Q Consensus 234 ea~r~e~~~~ee~~~q~~ak~eae 257 (651)
+-+++|++++++|-.+|+++...+
T Consensus 308 qqkekEkeEKrrKdE~Ek~kKqee 331 (811)
T KOG4364|consen 308 QQKEKEKEEKRRKDEQEKLKKQEE 331 (811)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 334444444444444555444444
No 23
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=90.46 E-value=6.2 Score=45.26 Aligned_cols=8 Identities=50% Similarity=0.667 Sum_probs=3.6
Q ss_pred ceEEEecc
Q 006315 70 AFVIRVSD 77 (651)
Q Consensus 70 ~fv~r~~~ 77 (651)
--|+=+.+
T Consensus 155 qI~IPL~~ 162 (489)
T PF05262_consen 155 QIVIPLSD 162 (489)
T ss_pred eEEEeccc
Confidence 34454443
No 24
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=89.78 E-value=1.7 Score=51.96 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=40.5
Q ss_pred HHHHHHHHHhh-CccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccC-CCcc---------cchhhHHH
Q 006315 434 CGYVIVLVASQ-VPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE-DGKI---------ESLENYLS 502 (651)
Q Consensus 434 LA~V~v~L~~~-~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~~-dG~~---------Ese~~Ylk 502 (651)
||.+++-|+.+ -|.-+.-|-=.=.++|||+|...- --|++||+.. ++.+ -....|..
T Consensus 566 ~aIlvvdImhGlepqtiESi~lLR~rktpFivALNK------------iDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~ 633 (1064)
T KOG1144|consen 566 LAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNK------------IDRLYGWKSCPNAPIVEALKKQKKDVQNEFKE 633 (1064)
T ss_pred eEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehh------------hhhhcccccCCCchHHHHHHHhhHHHHHHHHH
Confidence 34344444433 233333333333788999997751 1257888863 3321 23567899
Q ss_pred HHHHHHHHHHHHH
Q 006315 503 RLKSYMRLYAALI 515 (651)
Q Consensus 503 RMtGI~rLYAAIi 515 (651)
|+.-|+-=|+-.-
T Consensus 634 R~~~ii~efaEQg 646 (1064)
T KOG1144|consen 634 RLNNIIVEFAEQG 646 (1064)
T ss_pred HHHHHHHHHHHcc
Confidence 9999987776543
No 25
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=89.59 E-value=0.54 Score=53.89 Aligned_cols=170 Identities=17% Similarity=0.238 Sum_probs=101.5
Q ss_pred HHHHHHHHhhhcccc--ccccccccccccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHh-hccCC
Q 006315 350 KLKELDEENQSLKLS--SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVS-RCETP 426 (651)
Q Consensus 350 ~LKel~~~~~~lks~--lkk~~~~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKaIVs-QaEt~ 426 (651)
+|+.+.+++.+..+. ...+|-.+|+.|+..||.++.+ +|..|..+ +++. +-..--++|++.||. |+-+|
T Consensus 140 KL~~mq~qi~Dk~s~~yQRmnWEalkksInglInkvn~s--Ni~~ii~e---Lfqe---NiirgRgl~crsv~~aq~asp 211 (739)
T KOG2140|consen 140 KLRMMQAQITDKNSIEYQRMNWEALKKSINGLINKVNAS--NIQEIIRE---LFQE---NIIRGRGLLCRSVMQAQAASP 211 (739)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHhhhhHH--HHHHHHHH---HHHH---HHHhccchhHHHHHHHHhcCC
Confidence 455556666665542 4568999999999999998754 33344433 3332 111124566777665 55555
Q ss_pred CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHH
Q 006315 427 DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKS 506 (651)
Q Consensus 427 ~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~~dG~~Ese~~YlkRMtG 506 (651)
. ..-.+|.+++.|-+.||++|.+|+-+|..- |. -+|+..| +=|++
T Consensus 212 ~--ft~vyaALvAviNskfP~IgElLlkrLilq------f~-----------------r~f~RnD----------k~~c~ 256 (739)
T KOG2140|consen 212 G--FTPVYAALVAVINSKFPQIGELLLKRLILQ------FK-----------------RSFRRND----------KVSCL 256 (739)
T ss_pred C--CcHHHHHHHHHHccCCchHHHHHHHHHHHH------HH-----------------HHhcccc----------hHHHH
Confidence 3 556678888999999999999999887421 21 1222222 23455
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 006315 507 YMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKS 569 (651)
Q Consensus 507 I~rLYAAIiqt~~~g~~nP~gi~~~WkWLARILN~~P~~~ita~vL~afLEvAG~~L~~~YG~ 569 (651)
-+.=|.|++... +-.|-+ -+-..|.-+|-. |. +-...|..+||..||..|..+=.+
T Consensus 257 ~~~kfiahLinq----~VahEI-v~Leil~lLLe~-PT-ddSvevaI~flkecGakL~~VSpr 312 (739)
T KOG2140|consen 257 NASKFIAHLINQ----QVAHEI-VALEILTLLLER-PT-DDSVEVAIAFLKECGAKLAEVSPR 312 (739)
T ss_pred HHHHHHHHHHHH----HHHHHH-HHHHHHHHHhcC-CC-CchHHHHHHHHHHHHHHHHHhChH
Confidence 444455544311 101111 245566666665 43 334566678999999998876443
No 26
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.30 E-value=26 Score=39.64 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006315 233 EEAKRKERALQEEKIRQEKVKAEAE 257 (651)
Q Consensus 233 eea~r~e~~~~ee~~~q~~ak~eae 257 (651)
++-+-++.+.++...+++-+++|++
T Consensus 222 ~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 222 DQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444455566667777777777765
No 27
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=87.84 E-value=25 Score=35.42 Aligned_cols=25 Identities=48% Similarity=0.458 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006315 241 ALQEEKIRQEKVKAEAEMQAKLRAE 265 (651)
Q Consensus 241 ~~~ee~~~q~~ak~eae~~a~~~ae 265 (651)
..+|+..+..+-|-+|+++|...|+
T Consensus 100 ~e~Ee~e~~~kQkeeae~ka~EeAe 124 (171)
T PF05672_consen 100 KEQEEQERLQKQKEEAEAKAREEAE 124 (171)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455666666666677755555555
No 28
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=87.02 E-value=30 Score=42.18 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=5.4
Q ss_pred ccccccccchhhh
Q 006315 126 YLMDEVGLADGAL 138 (651)
Q Consensus 126 ~l~~~~~~~~~~l 138 (651)
|++-|..+-|-|+
T Consensus 688 ~q~KkiDh~ERA~ 700 (988)
T KOG2072|consen 688 YQEKKIDHLERAK 700 (988)
T ss_pred HHHhhhhHHHHHH
Confidence 3444444444333
No 29
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=85.95 E-value=55 Score=35.30 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=10.7
Q ss_pred ccccccccchh--hhHHhhhhhcc
Q 006315 126 YLMDEVGLADG--ALVELTHQHQL 147 (651)
Q Consensus 126 ~l~~~~~~~~~--~l~e~~~~~~~ 147 (651)
|-||-.+|.-+ +|.||.+-.+-
T Consensus 27 ~~FDP~aLERaAkAlrel~~S~~A 50 (276)
T PF12037_consen 27 SGFDPEALERAAKALRELNSSPHA 50 (276)
T ss_pred CCCCcHHHHHHHHHHHHHhcChhH
Confidence 44555555433 35566554443
No 30
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.45 E-value=5.4 Score=42.12 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006315 264 AEEAKRAALEAEKRAAKE 281 (651)
Q Consensus 264 ae~~~k~a~ea~~k~a~e 281 (651)
.++++|+.-|.+.|+..|
T Consensus 158 ee~~RkakEE~arkeheE 175 (299)
T KOG3054|consen 158 EEKERKAKEEEARKEHEE 175 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556655555555555
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=83.60 E-value=17 Score=44.76 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=6.8
Q ss_pred ccHHHHHHHHHHHH
Q 006315 148 GVKEEIRNLISTLE 161 (651)
Q Consensus 148 ~~~e~~r~~~~~~e 161 (651)
+.-|++...+..||
T Consensus 773 ~t~eev~~a~~~le 786 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELE 786 (1018)
T ss_pred ccHHHHHHHHHHHH
Confidence 44455555544444
No 32
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.73 E-value=87 Score=36.79 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=6.1
Q ss_pred CcccccccccCCC
Q 006315 310 DSSVIAGAQSRGS 322 (651)
Q Consensus 310 ~~~~~~~~~~~~~ 322 (651)
+.+.+.++-++|+
T Consensus 482 ~~kV~~i~~~~~~ 494 (548)
T COG2268 482 SEKVRVIGGANGG 494 (548)
T ss_pred ceeEEecCCcccc
Confidence 3444444444554
No 33
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.43 E-value=96 Score=35.33 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.8
Q ss_pred HHHHHH
Q 006315 509 RLYAAL 514 (651)
Q Consensus 509 rLYAAI 514 (651)
.||+-|
T Consensus 400 ~LYfEi 405 (420)
T COG4942 400 ALYFEI 405 (420)
T ss_pred chhhhh
Confidence 345444
No 34
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=82.29 E-value=13 Score=40.13 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhcc
Q 006315 411 SLATFSKKVVSRCE 424 (651)
Q Consensus 411 ~Ln~lAKaIVsQaE 424 (651)
.+.-+||-+|..+-
T Consensus 356 v~~~~ak~~id~g~ 369 (379)
T COG5269 356 VFDEFAKMFIDRGK 369 (379)
T ss_pred HHHHHHHHHHhcCC
Confidence 35666777666544
No 35
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=81.20 E-value=18 Score=41.08 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=3.1
Q ss_pred CCCCccCc
Q 006315 9 RCPQKVDG 16 (651)
Q Consensus 9 ~~~~~~~~ 16 (651)
+++..+.|
T Consensus 125 ~ma~~~~G 132 (429)
T PRK00247 125 RMARPEGG 132 (429)
T ss_pred hccccCCc
Confidence 33333344
No 36
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=77.40 E-value=72 Score=30.86 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=9.2
Q ss_pred ccHHHHHHHHHHHhh
Q 006315 192 NDTVYQRKIAEALDN 206 (651)
Q Consensus 192 ~~~~~qr~~ae~~~~ 206 (651)
+..+|+.+++++..+
T Consensus 61 ~~~e~e~~l~~A~~e 75 (164)
T PRK14471 61 LQADNERLLKEARAE 75 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455667777776533
No 37
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=77.17 E-value=88 Score=31.88 Aligned_cols=13 Identities=15% Similarity=-0.015 Sum_probs=7.9
Q ss_pred ccHHHHHHHHHHH
Q 006315 192 NDTVYQRKIAEAL 204 (651)
Q Consensus 192 ~~~~~qr~~ae~~ 204 (651)
+-.+|+.+++++.
T Consensus 101 ~l~e~e~~L~~A~ 113 (205)
T PRK06231 101 LLENAKQRHENAL 113 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 4456666666655
No 38
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=76.99 E-value=77 Score=30.97 Aligned_cols=25 Identities=8% Similarity=-0.108 Sum_probs=13.3
Q ss_pred hccHHHHHHHHHHHhhhhhHHhhhH
Q 006315 191 KNDTVYQRKIAEALDNHLTAVQRDH 215 (651)
Q Consensus 191 ~~~~~~qr~~ae~~~~~~~~~qr~~ 215 (651)
.+..+|+.+++.+..+....+...+
T Consensus 62 ~~~~~~e~~L~~A~~ea~~Ii~~A~ 86 (167)
T PRK14475 62 ALLADVKAEREEAERQAAAMLAAAK 86 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777776644444333333
No 39
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=73.72 E-value=95 Score=30.46 Aligned_cols=13 Identities=15% Similarity=-0.138 Sum_probs=6.5
Q ss_pred ccHHHHHHHHHHH
Q 006315 192 NDTVYQRKIAEAL 204 (651)
Q Consensus 192 ~~~~~qr~~ae~~ 204 (651)
+..+|+.+++++.
T Consensus 71 ~~~e~e~~L~~a~ 83 (175)
T PRK14472 71 ILRKNRELLAKAD 83 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555544
No 40
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.90 E-value=27 Score=37.12 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhc
Q 006315 412 LATFSKKVVSRC 423 (651)
Q Consensus 412 Ln~lAKaIVsQa 423 (651)
|+.+||-|-.+.
T Consensus 262 l~AVAkfIkqrG 273 (299)
T KOG3054|consen 262 LAAVAKFIKQRG 273 (299)
T ss_pred HHHHHHHHHHcC
Confidence 667777655444
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=72.76 E-value=1.1e+02 Score=38.09 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=18.6
Q ss_pred HhhhhHHHHHhhHHHHHhHHHHhhhccHHHHHHHHHHHhhhhhH
Q 006315 167 ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTA 210 (651)
Q Consensus 167 e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~~ae~~~~~~~~ 210 (651)
..++..+.+.|.++ +-+|+.+....+.+.|-..=++|+.
T Consensus 759 v~kkla~s~lr~~k-----~t~eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 759 VLKKLAESILRLEK-----RTLEEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555444 3344444455555555544444443
No 42
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=72.73 E-value=1.5e+02 Score=32.17 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=16.9
Q ss_pred hhHHhhhhhccccHHHHHHHHHHHH
Q 006315 137 ALVELTHQHQLGVKEEIRNLISTLE 161 (651)
Q Consensus 137 ~l~e~~~~~~~~~~e~~r~~~~~~e 161 (651)
-.+|+++.+-.--|.|.+.++...+
T Consensus 52 ~afel~k~QE~TkQ~E~~ak~~e~e 76 (276)
T PF12037_consen 52 KAFELMKKQEETKQAELQAKIAEYE 76 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777766655777777776655
No 43
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=72.25 E-value=24 Score=42.74 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=11.4
Q ss_pred hhhhHHhhhHHHHhHHHHHHhhh
Q 006315 206 NHLTAVQRDHELKSQIEERKIRS 228 (651)
Q Consensus 206 ~~~~~~qr~~e~~~q~~~r~~r~ 228 (651)
+|+++.|+.-+.+.+.+||+.|.
T Consensus 214 Kgv~~~qe~La~~qe~eE~qkre 236 (1064)
T KOG1144|consen 214 KGVRAMQEALAKRQEEEERQKRE 236 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554445555443
No 44
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=71.73 E-value=1.1e+02 Score=30.45 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=10.1
Q ss_pred hhccHHHHHHHHHHHhhhh
Q 006315 190 RKNDTVYQRKIAEALDNHL 208 (651)
Q Consensus 190 r~~~~~~qr~~ae~~~~~~ 208 (651)
|....++|+.|....++..
T Consensus 53 R~kq~E~q~ai~~QieEk~ 71 (157)
T PF15236_consen 53 RQKQLEHQRAIKQQIEEKR 71 (157)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556777666444333
No 45
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=71.52 E-value=1.4e+02 Score=31.45 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=4.8
Q ss_pred cHHHHHHHHHH
Q 006315 193 DTVYQRKIAEA 203 (651)
Q Consensus 193 ~~~~qr~~ae~ 203 (651)
..+|+.+++++
T Consensus 59 ~~e~e~~l~~a 69 (250)
T PRK14474 59 AERYRQKQQSL 69 (250)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 46
>PRK11637 AmiB activator; Provisional
Probab=68.17 E-value=2e+02 Score=32.04 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=14.3
Q ss_pred HhhhhHHHHHhhHHHH-HhHHHHhhhccHHHH
Q 006315 167 ENEQSNSALAQVEKDR-DMRREMDRKNDTVYQ 197 (651)
Q Consensus 167 e~~~~~~~~~~~~k~~-~~r~e~~r~~~~~~q 197 (651)
++.+....|...++.- ..+..+.+++...|+
T Consensus 104 ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 104 QIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444432 344455555555555
No 47
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=68.01 E-value=1.3e+02 Score=29.90 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=5.0
Q ss_pred ccccccccch
Q 006315 126 YLMDEVGLAD 135 (651)
Q Consensus 126 ~l~~~~~~~~ 135 (651)
||-.-..+..
T Consensus 33 ~LR~~tallD 42 (157)
T PF15236_consen 33 FLRGMTALLD 42 (157)
T ss_pred ccccccccCC
Confidence 6655444443
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=67.61 E-value=2.2e+02 Score=34.54 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHhc
Q 006315 388 DNVRTKASELVKILN 402 (651)
Q Consensus 388 ~QI~~Is~eL~~lL~ 402 (651)
.-++.+...|-+-|.
T Consensus 597 ~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 597 SAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHhhh
Confidence 344444444444443
No 49
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=66.55 E-value=1.5e+02 Score=33.74 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=6.4
Q ss_pred ccHHHHHHHHHHH
Q 006315 192 NDTVYQRKIAEAL 204 (651)
Q Consensus 192 ~~~~~qr~~ae~~ 204 (651)
...+|+.+++++.
T Consensus 54 ~~~~~e~~L~~Ak 66 (445)
T PRK13428 54 ADQAHTKAVEDAK 66 (445)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555544
No 50
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=63.73 E-value=1.4e+02 Score=28.73 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 006315 194 TVYQRKIAEAL 204 (651)
Q Consensus 194 ~~~qr~~ae~~ 204 (651)
.+|+.+++++.
T Consensus 77 ~e~e~~L~~A~ 87 (156)
T CHL00118 77 KQYEQELSKAR 87 (156)
T ss_pred HHHHHHHHHHH
Confidence 34555555544
No 51
>PLN03086 PRLI-interacting factor K; Provisional
Probab=63.35 E-value=36 Score=40.01 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=8.7
Q ss_pred cHHHHHHHHhhhcceeecc
Q 006315 447 QVMDILLGEFHRACIYTVP 465 (651)
Q Consensus 447 ef~DILLArf~kkCP~lVP 465 (651)
+...+|-..|..-+.+++|
T Consensus 201 npKavLE~~Lr~~stLT~G 219 (567)
T PLN03086 201 NHKAVLETALRQHATLSED 219 (567)
T ss_pred cHHHHHHHHhhcCccccCC
Confidence 3345555555444444433
No 52
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=63.05 E-value=1.3e+02 Score=34.28 Aligned_cols=17 Identities=0% Similarity=-0.121 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHHHHhc
Q 006315 592 SKLNLVIAEIQYYIEDK 608 (651)
Q Consensus 592 p~a~~~v~rLe~~Led~ 608 (651)
|-......+|...|...
T Consensus 384 pLs~~q~~~L~~~L~k~ 400 (445)
T PRK13428 384 ELSDAQRTRLTEVLSRI 400 (445)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 44455677777777653
No 53
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=62.37 E-value=2e+02 Score=29.87 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=6.2
Q ss_pred cHHHHHHHHHHH
Q 006315 193 DTVYQRKIAEAL 204 (651)
Q Consensus 193 ~~~~qr~~ae~~ 204 (651)
..+|+.+++++.
T Consensus 59 ~~e~e~~l~~a~ 70 (246)
T TIGR03321 59 RREYEEKNEELD 70 (246)
T ss_pred HHHHHHHHHHHH
Confidence 335555555543
No 54
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=61.70 E-value=2.2e+02 Score=30.16 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 006315 154 RNLISTLE 161 (651)
Q Consensus 154 r~~~~~~e 161 (651)
.+|+..=+
T Consensus 90 e~Wl~~K~ 97 (264)
T PF13904_consen 90 EEWLSAKE 97 (264)
T ss_pred HHHHHHHH
Confidence 34444433
No 55
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=61.19 E-value=4.5e+02 Score=33.62 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=16.7
Q ss_pred chhhhhhHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 006315 327 TKKLQSAVRATESALNIEQKRLQKLKELDEENQS 360 (651)
Q Consensus 327 ~~~~~~~~~~~~sal~~~~~R~k~LKel~~~~~~ 360 (651)
|.++...+......+..-..+...+.+++.+++.
T Consensus 773 I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~ 806 (1201)
T PF12128_consen 773 IQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQE 806 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444444444444444444555555555554
No 56
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=60.02 E-value=1.8e+02 Score=28.72 Aligned_cols=13 Identities=8% Similarity=0.000 Sum_probs=6.5
Q ss_pred ccHHHHHHHHHHH
Q 006315 192 NDTVYQRKIAEAL 204 (651)
Q Consensus 192 ~~~~~qr~~ae~~ 204 (651)
+..+|+.+++++.
T Consensus 77 ~~~e~e~~L~~A~ 89 (184)
T CHL00019 77 KLEKARARLRQAE 89 (184)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555544
No 57
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=59.20 E-value=2.4e+02 Score=31.34 Aligned_cols=28 Identities=39% Similarity=0.476 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006315 254 AEAEMQAKLRAEEAKRAALEAEKRAAKE 281 (651)
Q Consensus 254 ~eae~~a~~~ae~~~k~a~ea~~k~a~e 281 (651)
+++|.+++++-||-+|.|.++|.+.|.-
T Consensus 289 ~q~eeq~rkr~eE~~k~a~~~A~~~ass 316 (410)
T KOG4715|consen 289 AQAEEQARKRQEEREKEAAEQAEQSASS 316 (410)
T ss_pred HHHHHHHHHhHhHHHhhHhhhhhhhhcc
Confidence 5555557777777777777776666554
No 58
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=56.06 E-value=4.9e+02 Score=32.43 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHHHHHHH-hHhhhhHHHHHhhHHHHHhHHHHhhhccH
Q 006315 148 GVKEEIRNLISTLETQLI-SENEQSNSALAQVEKDRDMRREMDRKNDT 194 (651)
Q Consensus 148 ~~~e~~r~~~~~~e~~~~-~e~~~~~~~~~~~~k~~~~r~e~~r~~~~ 194 (651)
+-.-|..+++..++.-+- -|.-...++|--.+++-..|.+-|+.+=-
T Consensus 677 Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~e 724 (988)
T KOG2072|consen 677 KERKELQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDRELYE 724 (988)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 334455555555553322 13334466777777777777777776543
No 59
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=55.15 E-value=4e+02 Score=31.07 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=5.3
Q ss_pred HHhhCccHHHHH
Q 006315 441 VASQVPQVMDIL 452 (651)
Q Consensus 441 L~~~~Pef~DIL 452 (651)
|...||++..+|
T Consensus 306 ~~~~~~~~~~~l 317 (514)
T TIGR03319 306 VHGLHPELIKLL 317 (514)
T ss_pred CCcCCHHHHHHH
Confidence 333455544443
No 60
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=53.90 E-value=1.2e+02 Score=34.22 Aligned_cols=39 Identities=36% Similarity=0.504 Sum_probs=16.0
Q ss_pred hhHHHHhHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 006315 213 RDHELKSQIEERKIR-SDAAYEEAKRKERALQEEKIRQEK 251 (651)
Q Consensus 213 r~~e~~~q~~~r~~r-~~aa~eea~r~e~~~~ee~~~q~~ 251 (651)
+|||...+.-..+-- .+|.+-||.-+-++.|||..++=+
T Consensus 84 kd~eae~~~~akk~a~kea~ra~~~akkraa~eee~k~wk 123 (510)
T PF04747_consen 84 KDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKKWK 123 (510)
T ss_pred hhhHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 466665544433321 122222222233355555544443
No 61
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=53.73 E-value=1.2e+02 Score=36.02 Aligned_cols=13 Identities=38% Similarity=0.217 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 006315 340 ALNIEQKRLQKLK 352 (651)
Q Consensus 340 al~~~~~R~k~LK 352 (651)
||+-+..|...+.
T Consensus 729 aYwpe~kr~a~~d 741 (940)
T KOG4661|consen 729 AYWPESKRKAVLD 741 (940)
T ss_pred ccCchhhhhhHhh
Confidence 3444444444333
No 62
>PTZ00491 major vault protein; Provisional
Probab=53.45 E-value=1.4e+02 Score=36.94 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=15.7
Q ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHH
Q 006315 213 RDHELKSQIEERKIRSDAAYEEAKRK 238 (651)
Q Consensus 213 r~~e~~~q~~~r~~r~~aa~eea~r~ 238 (651)
++.|.|-.+|-.||-++++-|++|++
T Consensus 675 ~eQea~g~Lerqk~~d~~~aE~~r~~ 700 (850)
T PTZ00491 675 LEQEARGRLERQKMHDKAKAEEQRTK 700 (850)
T ss_pred HHHHhhchhHHHhhhhHHHHHHHHHH
Confidence 35556666666666566666666554
No 63
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=53.07 E-value=2.4e+02 Score=27.89 Aligned_cols=20 Identities=5% Similarity=-0.049 Sum_probs=10.8
Q ss_pred hHHHHhhhccHHHHHHHHHHH
Q 006315 184 MRREMDRKNDTVYQRKIAEAL 204 (651)
Q Consensus 184 ~r~e~~r~~~~~~qr~~ae~~ 204 (651)
.|.|++ .+..+|+..+.++.
T Consensus 50 ~r~eA~-~l~~e~e~~L~~Ar 69 (154)
T PRK06568 50 LKEDAA-LLFEQTNAQIKKLE 69 (154)
T ss_pred HHHHHH-HHHHHHHHHHHHHH
Confidence 333433 35556666666655
No 64
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.82 E-value=6.1e+02 Score=32.52 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=13.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhh
Q 006315 335 RATESALNIEQKRLQKLKELDEENQ 359 (651)
Q Consensus 335 ~~~~sal~~~~~R~k~LKel~~~~~ 359 (651)
+++...+...+.+++.|++..+.+.
T Consensus 767 GvD~~~I~~l~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 767 GVDPERIQQLKQEIEQLEKELKRIE 791 (1201)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665555444443
No 65
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.78 E-value=4.3e+02 Score=30.80 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhHhhhhc-------CCchhHHHHHHHHHHHHhcccccCCCcc
Q 006315 557 QLAGFALFKKYKSQFRKILDNIYDN----FLNALKAR-------EDSKLNLVIAEIQYYIEDKKFLEEPEGR 617 (651)
Q Consensus 557 EvAG~~L~~~YG~QF~KLL~lI~~d----~~p~L~~~-------~~p~a~~~v~rLe~~Led~~~l~ePEG~ 617 (651)
..+=..|+=.-|.|-.+++-++..+ |-..++++ .-|+...-...|..||+.+..-+.++|-
T Consensus 469 RsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~ 540 (630)
T KOG0742|consen 469 RSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGK 540 (630)
T ss_pred HHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCC
Confidence 3344444445677777776554432 22233333 2267777777888888877666666665
No 66
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=52.06 E-value=78 Score=36.87 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=15.8
Q ss_pred HHHHHHhhhc-ceeeccccccccccccccHHHHHHHcCcc
Q 006315 450 DILLGEFHRA-CIYTVPKHIVFSEAAFESEEAYYKTIGYR 488 (651)
Q Consensus 450 DILLArf~kk-CP~lVP~~~~~~k~~~qSeEey~K~mGYr 488 (651)
..|++.|... |-|---|++. .+ +++.++..||-
T Consensus 615 n~FliLfrds~cqfralyT~~-----~E-Teei~kl~gmg 648 (708)
T KOG3654|consen 615 NHFLILFRDSGCQFRALYTYM-----PE-TEEIRKLTGMG 648 (708)
T ss_pred hhhhhhhhhccceeecccccC-----cc-HHHHhhhhccC
Confidence 3455555443 4444444332 13 35566666654
No 67
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.10 E-value=5.2e+02 Score=31.51 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=11.8
Q ss_pred HHHHHHhhhhhHHhhhHHHHhH
Q 006315 199 KIAEALDNHLTAVQRDHELKSQ 220 (651)
Q Consensus 199 ~~ae~~~~~~~~~qr~~e~~~q 220 (651)
++.++.|+|-.=++|-......
T Consensus 601 R~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 601 RYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555433
No 68
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=50.30 E-value=3e+02 Score=28.19 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=7.8
Q ss_pred ccHHHHHHHHHHH
Q 006315 192 NDTVYQRKIAEAL 204 (651)
Q Consensus 192 ~~~~~qr~~ae~~ 204 (651)
+..+|+.+++++.
T Consensus 106 ~~~~ye~~L~~Ar 118 (204)
T PRK09174 106 AVAAYEQELAQAR 118 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666655
No 69
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=50.26 E-value=2e+02 Score=28.37 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=12.1
Q ss_pred cCccc--CCCcccchhhHHHHHHHH
Q 006315 485 IGYRE--EDGKIESLENYLSRLKSY 507 (651)
Q Consensus 485 mGYr~--~dG~~Ese~~YlkRMtGI 507 (651)
+|+.. .+|.++-.-.|..||.-+
T Consensus 149 GGvil~~~~g~I~~dnT~~~rl~~~ 173 (188)
T PRK02292 149 GGVVVESEDGRVRVNNTFDSILEDV 173 (188)
T ss_pred ceEEEEecCCceEEeccHHHHHHHH
Confidence 55554 356655555555555433
No 70
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=48.98 E-value=1.3e+02 Score=33.80 Aligned_cols=100 Identities=23% Similarity=0.296 Sum_probs=61.4
Q ss_pred CCCCCCCcchHHHHHH-----------------HHhCCCCCcc-chHHHHH----------------HHHHHHHHHHHHH
Q 006315 521 GVQNAHGLKEGWAWLA-----------------RFLNALPANI-YTAVALN----------------AFLQLAGFALFKK 566 (651)
Q Consensus 521 g~~nP~gi~~~WkWLA-----------------RILN~~P~~~-ita~vL~----------------afLEvAG~~L~~~ 566 (651)
+.-.|...+..|++|| ||.|.+.-.+ +|..++. +..+..|. ++++
T Consensus 258 gfidpndr~~~wKfLAAEalRG~GaiLl~s~GrRF~nELg~RDyvTgei~kl~~P~ednrallVmnea~~e~~~n-~inF 336 (477)
T KOG2404|consen 258 GFIDPNDRTALWKFLAAEALRGLGAILLNSTGRRFGNELGTRDYVTGEIQKLKCPIEDNRALLVMNEANYEAFGN-NINF 336 (477)
T ss_pred CccCCCCchhHHHHHHHHHhccCceEEEeccchhhhcccccchhhhHhHHhhcCCcccceeEEEecHhHHHHHhh-hhhh
Confidence 4456788889999998 4555432222 2333332 33444444 6777
Q ss_pred HHHHHHHHHHHH-HHHHhHhhhhcCCchhHHHHHHHHHHHHhc-ccccCCCcccc-CCCCCCCc
Q 006315 567 YKSQFRKILDNI-YDNFLNALKAREDSKLNLVIAEIQYYIEDK-KFLEEPEGRTL-QAPPLSST 627 (651)
Q Consensus 567 YG~QF~KLL~lI-~~d~~p~L~~~~~p~a~~~v~rLe~~Led~-~~l~ePEG~~m-~~~~~s~~ 627 (651)
| -|.||+.-+ ..++...++ -....+...|+.|-.-. +..+.|=||++ +.++||.+
T Consensus 337 Y--~~K~l~kK~~~~el~s~ln----~t~sel~ttl~eY~~~~~g~~~D~fgrk~f~~s~is~t 394 (477)
T KOG2404|consen 337 Y--MFKKLFKKYESAELASALN----ITESELKTTLEEYSKSFTGKSEDPFGRKVFPVSDISPT 394 (477)
T ss_pred H--hHHHHHHHhhHHHHHHHhC----CCHHHHHHHHHHHHHhhcCCCCCcCCCccccCCCCCcc
Confidence 7 777777543 455665555 23455677888886533 67889999975 45777754
No 71
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=47.86 E-value=2.9e+02 Score=27.32 Aligned_cols=12 Identities=33% Similarity=0.351 Sum_probs=5.7
Q ss_pred cHHHHHHHHHHH
Q 006315 193 DTVYQRKIAEAL 204 (651)
Q Consensus 193 ~~~~qr~~ae~~ 204 (651)
..+|+.+++++.
T Consensus 81 l~e~e~~L~~A~ 92 (184)
T PRK13455 81 LASYERKQREVQ 92 (184)
T ss_pred HHHHHHHHHHHH
Confidence 344555555543
No 72
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=47.72 E-value=2.8e+02 Score=27.15 Aligned_cols=13 Identities=31% Similarity=0.189 Sum_probs=7.0
Q ss_pred ccHHHHHHHHHHH
Q 006315 192 NDTVYQRKIAEAL 204 (651)
Q Consensus 192 ~~~~~qr~~ae~~ 204 (651)
+..+|+.+++++.
T Consensus 72 ~~~~~~~~L~~a~ 84 (174)
T PRK07352 72 ALAEAQQKLAQAQ 84 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 3345566666554
No 73
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=47.16 E-value=2.9e+02 Score=27.15 Aligned_cols=9 Identities=22% Similarity=0.206 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 006315 194 TVYQRKIAE 202 (651)
Q Consensus 194 ~~~qr~~ae 202 (651)
.+|+..+.+
T Consensus 77 ~e~e~~L~~ 85 (167)
T PRK08475 77 EDALKKLEE 85 (167)
T ss_pred HHHHHHHHH
Confidence 334444444
No 74
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.93 E-value=3.3e+02 Score=33.31 Aligned_cols=8 Identities=0% Similarity=-0.413 Sum_probs=4.3
Q ss_pred ceeecccc
Q 006315 460 CIYTVPKH 467 (651)
Q Consensus 460 CP~lVP~~ 467 (651)
+|++..|+
T Consensus 747 ~~~V~~f~ 754 (771)
T TIGR01069 747 HPKVKSFR 754 (771)
T ss_pred Ccceeeec
Confidence 45555554
No 75
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=46.48 E-value=2.1e+02 Score=28.46 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.3
Q ss_pred HHHHhh
Q 006315 222 EERKIR 227 (651)
Q Consensus 222 ~~r~~r 227 (651)
++|+-+
T Consensus 40 e~R~~~ 45 (155)
T PRK06569 40 NNRQTN 45 (155)
T ss_pred HHHHHH
Confidence 334333
No 76
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=44.21 E-value=1.2e+02 Score=34.40 Aligned_cols=46 Identities=26% Similarity=0.169 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhhhcccccCCCCCCCCCCcccccccccCCCCCCcch
Q 006315 283 AEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTK 328 (651)
Q Consensus 283 ~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (651)
.++++.-|+++++..-..+-..++-+|-|-.|+=.-.++|.+..+-
T Consensus 358 ke~~~~~nlsra~~dKrsKl~r~r~RDiSEkIaLG~~~~~~~~e~q 403 (506)
T KOG2441|consen 358 KEREKDRNLSRAAPDKRSKLQRDRGRDISEKIALGLAKPSESGEVQ 403 (506)
T ss_pred HHHHHhhhhhhhccchhhhhhhccCcchHhhhhhccCCCCCCCcch
Confidence 4555555666555444444445556666655543233555555543
No 77
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=44.10 E-value=92 Score=33.72 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=10.4
Q ss_pred ccccceecccccccCCC
Q 006315 97 VAVKRFTCDALYLSESD 113 (651)
Q Consensus 97 ~~~~~f~~~~~~l~~~~ 113 (651)
..|..|.+ |++||-.
T Consensus 187 ~~~~~l~~--i~~TDq~ 201 (321)
T PF07946_consen 187 KAGDYLEY--IHFTDQP 201 (321)
T ss_pred hhhhheeE--EEEECCC
Confidence 35777777 8888653
No 78
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=42.78 E-value=5e+02 Score=28.58 Aligned_cols=17 Identities=41% Similarity=0.456 Sum_probs=7.4
Q ss_pred HHHhHHHHHHhhhHHHH
Q 006315 216 ELKSQIEERKIRSDAAY 232 (651)
Q Consensus 216 e~~~q~~~r~~r~~aa~ 232 (651)
|+..+-||.+.|.+.|+
T Consensus 335 eleqmaeeekkr~eeae 351 (445)
T KOG2891|consen 335 ELEQMAEEEKKREEEAE 351 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444555544443
No 79
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.14 E-value=4.4e+02 Score=27.51 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=23.9
Q ss_pred hHHhhhhhccccHHHHHHHHHHHHHHHHhHhhhhHHHHHhh
Q 006315 138 LVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQV 178 (651)
Q Consensus 138 l~e~~~~~~~~~~e~~r~~~~~~e~~~~~e~~~~~~~~~~~ 178 (651)
.+||.+.|+ .-++.+..|-..+..|+++-.++-+++
T Consensus 61 ~~eLm~r~~-----~Y~~~vrslR~~fr~Ev~r~~e~~~g~ 96 (227)
T KOG4691|consen 61 FFELMERYQ-----HYRQTVRSLRMEFRSEVQRVHEARAGV 96 (227)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 556665554 356677777777788888776666664
No 80
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=41.03 E-value=3.6e+02 Score=26.45 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 006315 194 TVYQRKIAEAL 204 (651)
Q Consensus 194 ~~~qr~~ae~~ 204 (651)
.+|+.+++++.
T Consensus 71 ~e~e~~l~~a~ 81 (173)
T PRK13460 71 KDYEARLNSAK 81 (173)
T ss_pred HHHHHHHHHHH
Confidence 34455555544
No 81
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=40.70 E-value=3.4e+02 Score=26.17 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=6.2
Q ss_pred ccHHHHHHHHHHH
Q 006315 192 NDTVYQRKIAEAL 204 (651)
Q Consensus 192 ~~~~~qr~~ae~~ 204 (651)
+..+|+.+++++.
T Consensus 61 ~~~e~e~~l~~A~ 73 (164)
T PRK14473 61 AKRDYEAELAKAR 73 (164)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555543
No 82
>PTZ00491 major vault protein; Provisional
Probab=39.78 E-value=8.5e+02 Score=30.46 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=10.8
Q ss_pred HHhHHHHHHhhhHHHHHHHHHH
Q 006315 217 LKSQIEERKIRSDAAYEEAKRK 238 (651)
Q Consensus 217 ~~~q~~~r~~r~~aa~eea~r~ 238 (651)
..+.-|+++|-.+++.+.|+=|
T Consensus 721 a~a~aea~~ie~e~~v~~a~lr 742 (850)
T PTZ00491 721 ALAEAEARLIEAEAEVEQAELR 742 (850)
T ss_pred HHHHHHHHhhhhhhHHHHHHhh
Confidence 3344445555555555555444
No 83
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=39.27 E-value=9.3e+02 Score=30.76 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=5.2
Q ss_pred HHHhccCC
Q 006315 38 ETRLNASS 45 (651)
Q Consensus 38 ~~~~~~~~ 45 (651)
.+.|++++
T Consensus 53 ~k~lRa~~ 60 (1163)
T COG1196 53 AKNLRASK 60 (1163)
T ss_pred hhhhhccC
Confidence 56666666
No 84
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=39.08 E-value=1.2e+02 Score=24.08 Aligned_cols=21 Identities=43% Similarity=0.322 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006315 260 AKLRAEEAKRAALEAEKRAAK 280 (651)
Q Consensus 260 a~~~ae~~~k~a~ea~~k~a~ 280 (651)
|.+-+|.+++.++||.+.+.+
T Consensus 10 a~k~aEaeKqraAEA~k~aEa 30 (42)
T PF07046_consen 10 ATKVAEAEKQRAAEATKAAEA 30 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 85
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=38.48 E-value=4.1e+02 Score=26.40 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=23.4
Q ss_pred hhhccccHHHHHHHHHHHHHHHHhHhhhhHHHHHhhHHHHHhHHHHhhhccHHHHHHHHHH
Q 006315 143 HQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEA 203 (651)
Q Consensus 143 ~~~~~~~~e~~r~~~~~~e~~~~~e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~~ae~ 203 (651)
.+-.-+|-+.|+.++-..=. ..+|+..+. .| ..+.|+.|...+..+..+.-..+
T Consensus 10 EE~akRvEe~V~krVee~l~--~eei~~ei~--rR---vee~r~~me~~v~~ele~ek~~~ 63 (149)
T PF15346_consen 10 EETAKRVEEAVRKRVEEELN--SEEIEKEIQ--RR---VEEERKKMEKQVAEELEREKEEA 63 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666666666543221 223332221 11 23455555555554444444443
No 86
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=38.27 E-value=2.1e+02 Score=33.55 Aligned_cols=12 Identities=25% Similarity=0.210 Sum_probs=6.9
Q ss_pred cceecccccccC
Q 006315 100 KRFTCDALYLSE 111 (651)
Q Consensus 100 ~~f~~~~~~l~~ 111 (651)
---.-|++-|||
T Consensus 343 ~p~a~~evdlsd 354 (708)
T KOG3654|consen 343 DPAAEDEVDLSD 354 (708)
T ss_pred CCccccccCccc
Confidence 334456777774
No 87
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=37.33 E-value=2.5e+02 Score=28.95 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.6
Q ss_pred CHHHHH
Q 006315 26 SFDALL 31 (651)
Q Consensus 26 ~~~~~~ 31 (651)
.||.+.
T Consensus 28 ~fGk~~ 33 (266)
T cd03404 28 RFGKYS 33 (266)
T ss_pred EcCccc
Confidence 344443
No 88
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=37.07 E-value=3.4e+02 Score=29.77 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=2.9
Q ss_pred hhhHHHH
Q 006315 212 QRDHELK 218 (651)
Q Consensus 212 qr~~e~~ 218 (651)
.||-.++
T Consensus 227 ~~DPRIK 233 (379)
T COG5269 227 KRDPRIK 233 (379)
T ss_pred hcCcchh
Confidence 3444443
No 89
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=36.87 E-value=1.5e+02 Score=34.45 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=42.4
Q ss_pred hhhHHhhHHHHHHH-HHHHHHHHHHHHHhhh--ccc-cccccccccccccccccccccCcchh----HHHHHHHHHHHhc
Q 006315 331 QSAVRATESALNIE-QKRLQKLKELDEENQS--LKL-SSNEDFSGYEKDISRLIRQIRGLKDN----VRTKASELVKILN 402 (651)
Q Consensus 331 ~~~~~~~~sal~~~-~~R~k~LKel~~~~~~--lks-~lkk~~~~~kRqI~~kIGQLTns~~Q----I~~Is~eL~~lL~ 402 (651)
|.++.+-+.++..+ +.|.-.|+.++--+.+ -|. ..+-++-.+=|-|--.|||--+-.-+ ...|..++..+|+
T Consensus 347 ~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAaqmk~qV~thLrvIeeR~NqsLslL~~~P~vaqeirdev~ell~ 426 (615)
T KOG3540|consen 347 HRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAAQMKSQVMTHLRVIEERINQSLSLLYDVPAVAQEIRDEVDELLQ 426 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcchhHHHhcChHHHHHHHHHHHHHHh
Confidence 45666666666544 5666677776554433 111 23334445555555556554322211 2345555556665
Q ss_pred CCC-ChHHHHHHHHHHH
Q 006315 403 NPL-CPQSISLATFSKK 418 (651)
Q Consensus 403 ~~q-lP~~i~Ln~lAKa 418 (651)
..+ .+--|.-|+.++-
T Consensus 427 ~e~~~~de~~an~~~~P 443 (615)
T KOG3540|consen 427 VEDSHDDEFSANTTAKP 443 (615)
T ss_pred hhhcChhhhccccccCC
Confidence 322 2233444544444
No 90
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=35.34 E-value=1.7e+02 Score=31.76 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=3.9
Q ss_pred hccHHHHHHH
Q 006315 191 KNDTVYQRKI 200 (651)
Q Consensus 191 ~~~~~~qr~~ 200 (651)
++..+..+++
T Consensus 251 ~l~~e~~~K~ 260 (321)
T PF07946_consen 251 KLSPEAKKKA 260 (321)
T ss_pred eeCHHHHHHH
Confidence 3333333333
No 91
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.67 E-value=36 Score=38.85 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=26.2
Q ss_pred CCCCCCHHHHHHHHHHHHH--HhccCCCCcccccc
Q 006315 21 PEPDWSFDALLSELNSLET--RLNASSKPVPFTKT 53 (651)
Q Consensus 21 p~p~w~~~~~~~e~~~~~~--~~~~~~~~~p~~~~ 53 (651)
|.|.|||++-...--++-+ +-+++++|+|++-+
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQ 249 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQ 249 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhc
Confidence 9999999998877666533 56788899999655
No 92
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=34.30 E-value=3.7e+02 Score=24.65 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006315 260 AKLRAEEAKRAALEAEKRAAKE 281 (651)
Q Consensus 260 a~~~ae~~~k~a~ea~~k~a~e 281 (651)
|++..+.++..+....+...+.
T Consensus 59 Ak~eie~Ek~~a~~elk~eia~ 80 (103)
T PRK08404 59 KKKEGEEEAKKILEEGEKEIEE 80 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555554
No 93
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=34.21 E-value=4.8e+02 Score=25.93 Aligned_cols=6 Identities=83% Similarity=1.055 Sum_probs=2.5
Q ss_pred HHHHHH
Q 006315 233 EEAKRK 238 (651)
Q Consensus 233 eea~r~ 238 (651)
|||.+|
T Consensus 93 EEAQrk 98 (149)
T PF15346_consen 93 EEAQRK 98 (149)
T ss_pred HHHHHH
Confidence 444444
No 94
>PF07349 DUF1478: Protein of unknown function (DUF1478); InterPro: IPR009949 This family consists of several hypothetical Sapovirus VP3 proteins of around 165 residues in length. The function of this family is unknown.
Probab=33.18 E-value=39 Score=33.40 Aligned_cols=39 Identities=28% Similarity=0.583 Sum_probs=27.1
Q ss_pred CCCCCCcchHHHHHHHHhCCCCCcc-chHHHHHHHHHHHH
Q 006315 522 VQNAHGLKEGWAWLARFLNALPANI-YTAVALNAFLQLAG 560 (651)
Q Consensus 522 ~~nP~gi~~~WkWLARILN~~P~~~-ita~vL~afLEvAG 560 (651)
..||.|+.++|+||--.+-.+|-.. -.+++|.+|.-..|
T Consensus 35 ~nNpmgp~nAW~WLL~lvqsn~MSl~qy~taL~S~~llLG 74 (162)
T PF07349_consen 35 RNNPMGPHNAWSWLLPLVQSNQMSLMQYATALQSFVLLLG 74 (162)
T ss_pred hcCCCCCchHHHHhcccCCCCcccHHHHHHHHHHHHHHHc
Confidence 4589999999999987777654332 35677776654444
No 95
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=32.30 E-value=4.2e+02 Score=24.68 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 006315 194 TVYQRKIAEA 203 (651)
Q Consensus 194 ~~~qr~~ae~ 203 (651)
.+|+.+++++
T Consensus 60 ~~~e~~L~~a 69 (140)
T PRK07353 60 AQYEQQLASA 69 (140)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 96
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=32.01 E-value=6.2e+02 Score=26.58 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=15.0
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhccccc
Q 006315 340 ALNIEQKRL-QKLKELDEENQSLKLSS 365 (651)
Q Consensus 340 al~~~~~R~-k~LKel~~~~~~lks~l 365 (651)
.+..-+.|+ +.|+.|...+..++-.-
T Consensus 179 t~~EKnk~lq~QL~~L~~EL~~~kde~ 205 (246)
T PF00769_consen 179 TYAEKNKRLQEQLKELKSELEQLKDEE 205 (246)
T ss_dssp -HHHH-HHHHHHHHHHHHHHHTTB-CC
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhh
Confidence 444445554 57888888887776533
No 97
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=31.38 E-value=5.2e+02 Score=25.43 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 006315 194 TVYQRKIAEAL 204 (651)
Q Consensus 194 ~~~qr~~ae~~ 204 (651)
.+|+.+++++.
T Consensus 73 ~e~e~~l~~a~ 83 (173)
T PRK13453 73 EENKQKLKETQ 83 (173)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 98
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.93 E-value=2e+02 Score=27.90 Aligned_cols=9 Identities=33% Similarity=0.859 Sum_probs=5.7
Q ss_pred HHhHHHHhh
Q 006315 182 RDMRREMDR 190 (651)
Q Consensus 182 ~~~r~e~~r 190 (651)
|++++|+..
T Consensus 72 R~a~ke~~~ 80 (132)
T PF11208_consen 72 REAKKEMKK 80 (132)
T ss_pred HHHHHhhhc
Confidence 566667655
No 99
>PRK00106 hypothetical protein; Provisional
Probab=30.86 E-value=9.6e+02 Score=28.39 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.7
Q ss_pred HHHHhc
Q 006315 397 LVKILN 402 (651)
Q Consensus 397 L~~lL~ 402 (651)
|..|+.
T Consensus 285 le~Li~ 290 (535)
T PRK00106 285 LESLIK 290 (535)
T ss_pred HHHHHH
Confidence 444443
No 100
>PLN02316 synthase/transferase
Probab=30.85 E-value=1.4e+02 Score=37.61 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 006315 501 LSRLKSYMRLYAALIQ 516 (651)
Q Consensus 501 lkRMtGI~rLYAAIiq 516 (651)
..|+.-+++..+.+++
T Consensus 689 ~~RF~~F~~Aale~l~ 704 (1036)
T PLN02316 689 GERFGFFCHAALEFLL 704 (1036)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777666666554
No 101
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=29.90 E-value=33 Score=29.62 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=14.5
Q ss_pred Ccc-ccCCCCCCCHHHHHHH
Q 006315 15 DGI-AIDPEPDWSFDALLSE 33 (651)
Q Consensus 15 ~~~-~~dp~p~w~~~~~~~e 33 (651)
+|| --||+|.||.+++++=
T Consensus 12 ~gi~L~DP~p~~spe~V~df 31 (66)
T TIGR03738 12 NGVRLADPSPAMSPEQVRDF 31 (66)
T ss_pred CCeEcCCCCCCCCHHHHHHH
Confidence 453 3599999999998763
No 102
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=29.32 E-value=7.6e+02 Score=26.98 Aligned_cols=33 Identities=12% Similarity=0.361 Sum_probs=15.2
Q ss_pred ccccccccchhhhHHhhhhhccccHHHHHHHHHHH
Q 006315 126 YLMDEVGLADGALVELTHQHQLGVKEEIRNLISTL 160 (651)
Q Consensus 126 ~l~~~~~~~~~~l~e~~~~~~~~~~e~~r~~~~~~ 160 (651)
|+=.|.|..-+-=. .-..-..-..|+.=-+.+|
T Consensus 105 fvP~ktG~D~~TQI--~~gdLFDFd~EV~PiLeVL 137 (291)
T PF06098_consen 105 FVPAKTGIDVETQI--EEGDLFDFDEEVKPILEVL 137 (291)
T ss_pred CCCCCCCCCcceee--ccccccchHhhhhhHHHHH
Confidence 66677775433221 1112234455555554443
No 103
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=29.19 E-value=1.6e+02 Score=23.40 Aligned_cols=11 Identities=64% Similarity=0.622 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 006315 271 ALEAEKRAAKE 281 (651)
Q Consensus 271 a~ea~~k~a~e 281 (651)
++|++++.++|
T Consensus 27 ~aEaeKqraaE 37 (42)
T PF07046_consen 27 AAEAEKQRAAE 37 (42)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 104
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=29.16 E-value=2.6e+02 Score=32.33 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=5.1
Q ss_pred ccccccccccccc
Q 006315 48 VPFTKTKSREIST 60 (651)
Q Consensus 48 ~p~~~~~~~~~~~ 60 (651)
+|-+...+..|++
T Consensus 92 ~~~s~~~l~~~~~ 104 (460)
T KOG1363|consen 92 VPSSNGLLGGWSD 104 (460)
T ss_pred ccccccccccccc
Confidence 3333333444444
No 105
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=29.03 E-value=5.7e+02 Score=25.23 Aligned_cols=70 Identities=20% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006315 224 RKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKR 293 (651)
Q Consensus 224 r~~r~~aa~eea~r~e~~~~ee~~~q~~ak~eae~~a~~~ae~~~k~a~ea~~k~a~e~~e~e~~~~~~~ 293 (651)
.+|..+|..|-.+--+.|.++...-.+.++.+|+..+..-.+.+++.+....+++...+...-+.+....
T Consensus 9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~a 78 (198)
T PRK03963 9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAV 78 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 106
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=28.40 E-value=9.9e+02 Score=27.79 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=8.5
Q ss_pred ChHHHH-HHHHHHHHHhhc
Q 006315 406 CPQSIS-LATFSKKVVSRC 423 (651)
Q Consensus 406 lP~~i~-Ln~lAKaIVsQa 423 (651)
.|+.|. |-+++=.|++-|
T Consensus 536 eevehlSle~~~idi~~e~ 554 (672)
T KOG4722|consen 536 EEVEHLSLEHLAIDICSEC 554 (672)
T ss_pred cccccccHHhhhhHHHHhc
Confidence 344442 555554444444
No 107
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=27.06 E-value=5.8e+02 Score=27.59 Aligned_cols=14 Identities=29% Similarity=0.200 Sum_probs=6.7
Q ss_pred CCCCccccccCCcc
Q 006315 112 SDDSDDDVALGGES 125 (651)
Q Consensus 112 ~~~~~~~~~~~~~~ 125 (651)
+|||+++...-.-|
T Consensus 26 ~SdSEde~~~~lKP 39 (276)
T PF06991_consen 26 SSDSEDEEEPLLKP 39 (276)
T ss_pred cccccccccccccc
Confidence 34454444444455
No 108
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=26.99 E-value=1.4e+02 Score=29.01 Aligned_cols=7 Identities=14% Similarity=0.563 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 006315 151 EEIRNLI 157 (651)
Q Consensus 151 e~~r~~~ 157 (651)
+-+|+-+
T Consensus 100 ~~lR~vi 106 (196)
T cd03401 100 EVLKAVV 106 (196)
T ss_pred HHHHHHH
Confidence 3344333
No 109
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.88 E-value=3e+02 Score=31.55 Aligned_cols=13 Identities=15% Similarity=0.003 Sum_probs=6.7
Q ss_pred cCCccccccccccc
Q 006315 121 LGGESYLMDEVGLA 134 (651)
Q Consensus 121 ~~~~~~l~~~~~~~ 134 (651)
..+-| ++++.|.-
T Consensus 304 Q~sgP-~~~~E~~t 316 (440)
T KOG2357|consen 304 QFSGP-IDQEEGET 316 (440)
T ss_pred CCCCC-cccccccc
Confidence 44445 55555544
No 110
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=25.93 E-value=43 Score=28.74 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=15.3
Q ss_pred Cccc-cCCCCCCCHHHHHHHH
Q 006315 15 DGIA-IDPEPDWSFDALLSEL 34 (651)
Q Consensus 15 ~~~~-~dp~p~w~~~~~~~e~ 34 (651)
+|+- -||.|.||.+++++=.
T Consensus 13 ~g~~L~DP~p~~spe~V~~~y 33 (65)
T PF14454_consen 13 NGITLPDPNPSLSPEEVRDFY 33 (65)
T ss_pred CCEECCCCCCCCCHHHHHHHH
Confidence 5643 4899999999997643
No 111
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=25.34 E-value=3.7e+02 Score=32.96 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=86.8
Q ss_pred ccccccccccccccccccccCcchhHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHh
Q 006315 365 SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQ-SISLATFSKKVVSRCETPDDNVAMSCGYVIVLVAS 443 (651)
Q Consensus 365 lkk~~~~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~~~qlP~-~i~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~ 443 (651)
-..++..++|+|+-.+|.||.+ .|..|+..|..+-...+-.+ .-+|..+-..++.+-..-.-..+.-+|.+++.+.
T Consensus 312 ~sE~l~rl~rkv~g~LNKLSda--Ni~~I~~~i~~Ly~~~sr~~v~~sLtk~l~~~~~~~~~~ld~~~~~y~AL~~~l~- 388 (822)
T KOG2141|consen 312 ESEQLQRLRRKVNGSLNKLSDA--NIIKIIAGIAELYMNNSRYDVTSSLTKLLLKALLGPFRLLDSLLTTYAALAAMLH- 388 (822)
T ss_pred chHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-
Confidence 4456778999999999999764 57788888888776421111 1123333333343333311124445555555443
Q ss_pred hCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 006315 444 QVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ 523 (651)
Q Consensus 444 ~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~g~~ 523 (651)
...+.-+=|||+.+..-.+-.++- .++. .+.-.+-|.+|+.|.+-+....+
T Consensus 389 --~~vg~eigahf~q~~ve~f~~~~~-------~~~~----------------~~~~~K~~~Nl~~~l~ylynF~i---- 439 (822)
T KOG2141|consen 389 --TMVGNEIGAHFLQTFVEDFLKSYK-------EEEE----------------MDLKDKSLNNIVLFLSYLYNFGI---- 439 (822)
T ss_pred --HHHhhHHHHHHHHHHHHHHHHHHH-------HHHh----------------cccccchhhhHHHHHHHHHHhhc----
Confidence 334455556664433222222221 1110 00114567788877766654221
Q ss_pred CCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 006315 524 NAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQF 571 (651)
Q Consensus 524 nP~gi~~~WkWLARILN~~P~~~ita~vL~afLEvAG~~L~~~YG~QF 571 (651)
+...-..-.|-.++-. ++.+...+|-.++..||+.|-.-=...+
T Consensus 440 --vs~~LiydiI~kl~~~--l~e~~ve~ll~ii~~~G~~LRkDDp~al 483 (822)
T KOG2141|consen 440 --VSCSLIYDIIRKLAEN--LNETNVEALLTIIANCGFSLRKDDPLAL 483 (822)
T ss_pred --ccHHHHHHHHHHHHhc--hhhhhHHHHHHHHHHccchhcCCChHHH
Confidence 1122223333333332 3446666777889999988765444333
No 112
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=25.14 E-value=1e+02 Score=33.30 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006315 235 AKRKERALQEEKIRQEK 251 (651)
Q Consensus 235 a~r~e~~~~ee~~~q~~ 251 (651)
+||||+.+=||++++++
T Consensus 95 ~krkek~~iee~e~~~q 111 (279)
T PF07271_consen 95 YKRKEKRMIEEKEEHEQ 111 (279)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 34666677776666555
No 113
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=25.04 E-value=3.7e+02 Score=24.25 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHhCCCCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006315 534 WLARFLNALPANIY-TAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFL 583 (651)
Q Consensus 534 WLARILN~~P~~~i-ta~vL~afLEvAG~~L~~~YG~QF~KLL~lI~~d~~ 583 (651)
|+-.+.+.+|...+ ..+|+.+++..++......|...|.+++.-+..+..
T Consensus 37 i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~ 87 (121)
T smart00582 37 WEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVL 87 (121)
T ss_pred HHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 45556665444444 578899999988765434444444444444443333
No 114
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.38 E-value=1.7e+03 Score=29.29 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=9.2
Q ss_pred HHhHhhhhHHHHHhhHH
Q 006315 164 LISENEQSNSALAQVEK 180 (651)
Q Consensus 164 ~~~e~~~~~~~~~~~~k 180 (651)
|..+|+.+.+.|..|+.
T Consensus 1516 L~~~I~e~v~sL~nVd~ 1532 (1758)
T KOG0994|consen 1516 LTGEIQERVASLPNVDA 1532 (1758)
T ss_pred HHHHHHHHHHhcccHHH
Confidence 44555555555555543
No 115
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.00 E-value=3.6e+02 Score=29.42 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=5.2
Q ss_pred ccccccccccc
Q 006315 369 FSGYEKDISRL 379 (651)
Q Consensus 369 ~~~~kRqI~~k 379 (651)
.+.++=||+.-
T Consensus 208 ys~crlQiRl~ 218 (290)
T KOG2689|consen 208 YSQCRLQIRLP 218 (290)
T ss_pred ccceEEEEEcC
Confidence 34455555543
No 116
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=23.93 E-value=7.6e+02 Score=24.93 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=14.0
Q ss_pred cCcccC--CCcc---cchhhHHHHHHHHHHH
Q 006315 485 IGYREE--DGKI---ESLENYLSRLKSYMRL 510 (651)
Q Consensus 485 mGYr~~--dG~~---Ese~~YlkRMtGI~rL 510 (651)
+|+... ||.+ -|.+...+++.++++-
T Consensus 159 gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~ 189 (198)
T PRK01558 159 KGFKIQQKDGSLYYDFSAEAIADILFSYLNP 189 (198)
T ss_pred cceEEEEcCCCeEEeCcHHHHHHHHHHHhcH
Confidence 466643 5654 3455555666555543
No 117
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=23.63 E-value=7.4e+02 Score=24.66 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHhHhhhhHHHHHhhHHHHHhHHHHhhhccHHHHHHHHHHHhhhhhHHhhhHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Q 006315 164 LISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQ 243 (651)
Q Consensus 164 ~~~e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~~ae~~~~~~~~~qr~~e~~~q~~~r~~r~~aa~eea~r~e~~~~ 243 (651)
+.+=++.....+..--...+..++--..+..+|+.+++++..+....+...++...++.++.+ .++..|-++.. +.-
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~-~~A~~e~~~~~--aea 132 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAI-AKADAEIAAKA--AES 132 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006315 244 EEKIRQEKVKAEAEMQA 260 (651)
Q Consensus 244 ee~~~q~~ak~eae~~a 260 (651)
++++.+++.++-.++..
T Consensus 133 ~~~I~~~k~~a~~~l~~ 149 (181)
T PRK13454 133 EKRIAEIRAGALESVEE 149 (181)
T ss_pred HHHHHHHHHHHHHHHHH
No 118
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=23.57 E-value=8.3e+02 Score=25.21 Aligned_cols=9 Identities=11% Similarity=-0.108 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 006315 255 EAEMQAKLR 263 (651)
Q Consensus 255 eae~~a~~~ 263 (651)
.+++.+++.
T Consensus 72 ~a~l~~R~~ 80 (207)
T PRK01005 72 ALVQAGKRS 80 (207)
T ss_pred HHHHHHHHH
Confidence 333333333
No 119
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.93 E-value=1.8e+03 Score=28.98 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=12.2
Q ss_pred ccceEEEeccccccc
Q 006315 68 ARAFVIRVSDDELEN 82 (651)
Q Consensus 68 ~~~fv~r~~~~~~~~ 82 (651)
.-|||=-|+-|+|++
T Consensus 353 ~pP~vPevssd~DTs 367 (1317)
T KOG0612|consen 353 VPPVVPEVSSDDDTS 367 (1317)
T ss_pred CCCCCCcCCCCCccc
Confidence 567888898888876
No 120
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.73 E-value=5.1e+02 Score=30.14 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=27.3
Q ss_pred CCcchHHHHHHHHhCC-CCC-ccchHHHHHHHHHHHHHHHH
Q 006315 526 HGLKEGWAWLARFLNA-LPA-NIYTAVALNAFLQLAGFALF 564 (651)
Q Consensus 526 ~gi~~~WkWLARILN~-~P~-~~ita~vL~afLEvAG~~L~ 564 (651)
.+...+=+.|.+-||. .|. ..++.+||.+..+-||+.|+
T Consensus 34 ~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh 74 (470)
T KOG1087|consen 34 GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFH 74 (470)
T ss_pred cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444666666666664 232 34578899999999999998
No 121
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.22 E-value=1.9e+03 Score=28.96 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006315 338 ESALNIEQKRLQKLKELD 355 (651)
Q Consensus 338 ~sal~~~~~R~k~LKel~ 355 (651)
+.-|-..++.++.||.|.
T Consensus 1699 ~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1699 EKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555566666666665
No 122
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=22.05 E-value=7.1e+02 Score=23.89 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 006315 194 TVYQRKIAEAL 204 (651)
Q Consensus 194 ~~~qr~~ae~~ 204 (651)
.+|+.+++++.
T Consensus 60 ~e~~~~l~~a~ 70 (159)
T PRK13461 60 LKNERELKNAK 70 (159)
T ss_pred HHHHHHHHHHH
Confidence 34444554443
No 123
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=1.1e+03 Score=25.95 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=7.5
Q ss_pred HHHHhhhHHHHHHHHHH
Q 006315 222 EERKIRSDAAYEEAKRK 238 (651)
Q Consensus 222 ~~r~~r~~aa~eea~r~ 238 (651)
+.+++|+......|+++
T Consensus 119 ~k~~~ks~~~~~~a~~r 135 (290)
T KOG2689|consen 119 EKQRRKSGDEMSAAKRR 135 (290)
T ss_pred HHhhhhcccHHHHHHHH
Confidence 33444444444445444
No 124
>PRK00106 hypothetical protein; Provisional
Probab=21.62 E-value=1.4e+03 Score=27.11 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=6.7
Q ss_pred hHHHHHHHHhCC
Q 006315 530 EGWAWLARFLNA 541 (651)
Q Consensus 530 ~~WkWLARILN~ 541 (651)
.-|-++|.+|..
T Consensus 373 ~e~a~~AGLLHD 384 (535)
T PRK00106 373 VALARRAGFLHD 384 (535)
T ss_pred HHHHHHHHHHHh
Confidence 355556666554
No 125
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=21.29 E-value=7.3e+02 Score=23.78 Aligned_cols=13 Identities=46% Similarity=0.271 Sum_probs=6.8
Q ss_pred ccHHHHHHHHHHH
Q 006315 192 NDTVYQRKIAEAL 204 (651)
Q Consensus 192 ~~~~~qr~~ae~~ 204 (651)
+..+|+.+++.+.
T Consensus 55 ~~~~~e~~L~~A~ 67 (159)
T PRK09173 55 LLAEYQRKRKEAE 67 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 126
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=21.03 E-value=1.3e+03 Score=26.64 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHHHHHHHhHhhhhHHHHHhhHHHHHhHHHHhhhccHHHHHHHH---HHHhhhhhHHhhhHH
Q 006315 148 GVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIA---EALDNHLTAVQRDHE 216 (651)
Q Consensus 148 ~~~e~~r~~~~~~e~~~~~e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~~a---e~~~~~~~~~qr~~e 216 (651)
|+..-+..++..+|..+++|.++...++.. +=..|+|++++ .++||.-| |+++....+-+|+.-
T Consensus 195 rl~~~~kkq~l~le~~l~eEy~rkm~aL~~-~c~lE~r~k~e----~~~qre~a~~~eaeel~k~~~e~~a~ 261 (429)
T PF12297_consen 195 RLSSVFKKQFLGLEKRLQEEYDRKMVALTA-ECNLETRKKME----AQHQREMAEMEEAEELLKHASERSAA 261 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH----HHHHHHHHHHHHHHHHHhCccHhhHH
Confidence 567778899999999999999988777753 23346666655 48888877 455444444444443
No 127
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=20.51 E-value=1e+02 Score=38.47 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=27.6
Q ss_pred cccccceecccccccCC-CCCccccccCCccccccccccchhhhHHhhhhhc
Q 006315 96 LVAVKRFTCDALYLSES-DDSDDDVALGGESYLMDEVGLADGALVELTHQHQ 146 (651)
Q Consensus 96 ~~~~~~f~~~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~~~~~l~e~~~~~~ 146 (651)
..+|.-|--++...-|+ +|+|++++.+.++-+++..-..+.++.+...++-
T Consensus 61 ~~s~~gf~~~e~dvDdeveddd~~~edEed~~~~~~ie~~e~~~~d~~~~~R 112 (1024)
T KOG1999|consen 61 KESGGGFIDREADVDDEVEDDDDDEEDEEDIELHNDIEESEEDLPDERGDRR 112 (1024)
T ss_pred ccccccccccccccccccccccchhccCcchhhcccchhccccccccccccc
Confidence 45788888877765544 2233333444444555555555555544444443
No 128
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.30 E-value=5.7e+02 Score=28.20 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=22.1
Q ss_pred chhhhHHhhhhhccccHHHHHHHHHHHHHHHHhHhhhhHH
Q 006315 134 ADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNS 173 (651)
Q Consensus 134 ~~~~l~e~~~~~~~~~~e~~r~~~~~~e~~~~~e~~~~~~ 173 (651)
+|.+.+.|.+.- .+ +....+|..-|..|..+|++...
T Consensus 102 vEdii~nL~~~~--d~-~~te~~l~~y~~~n~~~I~~n~~ 138 (309)
T TIGR00570 102 VEDIVYNLTNNI--DL-ENTKKKIETYQKENKDVIQKNKE 138 (309)
T ss_pred HHHHHHHhhcCC--cH-HHHHHHHHHHHHHhHHHHHHHHH
Confidence 455555555432 22 45777777777777777775443
Done!