Query 006315
Match_columns 651
No_of_seqs 153 out of 203
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 21:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pev_B Nucleoporin GLE1; RECA, 100.0 1.8E-64 6.3E-69 522.5 24.1 264 334-608 5-284 (297)
2 3rk6_A Polyadenylate-binding p 88.0 4 0.00014 40.7 11.7 167 371-567 18-195 (234)
3 1hu3_A EIF4GII; heat repeat, t 85.5 5.4 0.00018 39.9 11.2 219 368-614 7-244 (260)
4 2vso_E Eukaryotic initiation f 82.2 19 0.00063 36.5 13.6 174 368-567 32-232 (284)
5 3oja_B Anopheles plasmodium-re 81.2 36 0.0012 36.9 16.4 23 166-188 470-492 (597)
6 2zuo_A MVP, major vault protei 77.5 29 0.001 40.8 14.5 22 217-238 684-705 (861)
7 2i1j_A Moesin; FERM, coiled-co 75.3 7.7 0.00026 43.5 9.0 30 340-369 508-538 (575)
8 2zuo_A MVP, major vault protei 72.6 1.6E+02 0.0054 34.8 19.8 13 99-111 625-637 (861)
9 3vkg_A Dynein heavy chain, cyt 72.1 42 0.0014 45.0 15.7 15 445-459 2242-2256(3245)
10 3iox_A AGI/II, PA; alpha helix 64.4 99 0.0034 34.4 14.4 19 298-316 120-138 (497)
11 2i1j_A Moesin; FERM, coiled-co 52.8 27 0.00092 39.1 7.8 18 175-192 320-337 (575)
12 1i84_S Smooth muscle myosin he 35.6 1.2E+02 0.0041 36.7 10.1 15 31-45 663-677 (1184)
13 2dfs_A Myosin-5A; myosin-V, in 30.4 7.9E+02 0.027 29.6 18.2 9 34-42 644-652 (1080)
14 3v6i_A V-type ATP synthase sub 28.5 3.7E+02 0.013 25.1 11.7 72 222-293 3-74 (187)
15 1i84_S Smooth muscle myosin he 28.1 2E+02 0.0068 34.7 10.3 12 147-158 822-833 (1184)
16 3iox_A AGI/II, PA; alpha helix 27.1 6.9E+02 0.024 27.8 15.9 9 194-202 30-38 (497)
17 1deq_A Fibrinogen (alpha chain 23.8 1.5E+02 0.0053 31.9 7.3 61 143-204 119-188 (390)
18 3vkg_A Dynein heavy chain, cyt 23.5 1.6E+03 0.054 30.8 20.9 18 339-356 2080-2098(3245)
19 3v6i_B V-type ATP synthase, su 21.3 4.4E+02 0.015 23.5 14.9 9 249-257 64-72 (105)
20 4efa_G V-type proton ATPase su 20.2 3.5E+02 0.012 24.4 7.9 12 246-257 36-47 (119)
21 1v9d_A Diaphanous protein homo 20.2 93 0.0032 32.2 4.8 7 27-33 106-112 (340)
22 3cay_A LPD-12; alpha helix, ac 20.1 93 0.0032 21.2 3.0 11 269-279 12-22 (27)
No 1
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=100.00 E-value=1.8e-64 Score=522.47 Aligned_cols=264 Identities=16% Similarity=0.273 Sum_probs=232.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH-HhhhccccccccccccccccccccccccCcchhHHHHHHHHHHHhcCC---CChHH
Q 006315 334 VRATESALNIEQKRLQKLKELDE-ENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP---LCPQS 409 (651)
Q Consensus 334 ~~~~~sal~~~~~R~k~LKel~~-~~~~lks~lkk~~~~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~~~---qlP~~ 409 (651)
|.+.+..+..|+.+++.||..-. ..+..++++|+.++++||+||++|||||+|.+||++|+++|.++|++. ++|+.
T Consensus 5 ~~~~~~~~~~y~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~ 84 (297)
T 3pev_B 5 FDKISKMFWHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYH 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHH
Confidence 78889999999999999987443 233346689999999999999999999999999999999999999864 46688
Q ss_pred HHHHHHHHHHHhhccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcC
Q 006315 410 ISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIG 486 (651)
Q Consensus 410 i~Ln~lAKaIVsQaEt~---~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mG 486 (651)
|+||+|||+||+|||++ ++++|||+|.|++.||..||+|+|+||||||++|||+||||++ .+| ++|+++||
T Consensus 85 ~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~-----~~t-eegr~~mG 158 (297)
T 3pev_B 85 WILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCE-----IDT-EKGRQNMG 158 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCC-----CSS-HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCC-----ccc-HHHHHHcC
Confidence 89999999999999995 6789999999999999999999999999999999999999974 234 67888999
Q ss_pred ccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC-----CCCCCCCcchHHHHHHHHhCCCCCccc---hHHHHHHHHH
Q 006315 487 YRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP-----GVQNAHGLKEGWAWLARFLNALPANIY---TAVALNAFLQ 557 (651)
Q Consensus 487 Yr~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~-----g~~nP~gi~~~WkWLARILN~~P~~~i---ta~vL~afLE 557 (651)
|+. +||+||++++|++||+||++|||||+++++| +.+||||++++|+|||||||++|. .+ |++||++||+
T Consensus 159 ~~~~~dg~~E~~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~-~~t~t~~~vL~~~Le 237 (297)
T 3pev_B 159 WKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQEFITTTSHPFPIALSWHILARICNTPLN-LITNTHFVILGSWWD 237 (297)
T ss_dssp CCBCTTSCBCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGG-GCCHHHHHHHHHHHH
T ss_pred CeeCCCCCcccHHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCchHHHHHHHHHhCCCHH-hhcccHHHHHHHHHH
Confidence 986 5899999999999999999999999999854 467999999999999999999554 44 4559999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCchhHHHHHHHHHHHHhc
Q 006315 558 LAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDK 608 (651)
Q Consensus 558 vAG~~L~~~YG~QF~KLL~lI~~d~~p~L~~~~~p~a~~~v~rLe~~Led~ 608 (651)
+||++|+++||+||.|||++|.++|+|++++++.++ ++||+.+++++
T Consensus 238 ~ag~~l~~~Yg~Qf~KlL~~i~~~~~~~l~~~~~~~----a~RL~~l~e~~ 284 (297)
T 3pev_B 238 AAAVQFLQAYGNQASKLLILIGEELTSRMAEKKYVG----AARLRILLEAW 284 (297)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTHHHHHTGGGCCHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcc----HHHHHHHHHHH
Confidence 999999999999999999999999999999876544 45555555554
No 2
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=87.98 E-value=4 Score=40.70 Aligned_cols=167 Identities=14% Similarity=0.175 Sum_probs=104.1
Q ss_pred ccccccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhC---cc
Q 006315 371 GYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQV---PQ 447 (651)
Q Consensus 371 ~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~---Pe 447 (651)
.+.|+|+-.+|.||...+.+..++.+|..+++.. ....-.|..+++-|+.++-.+ |..+..+|.++..|.... |+
T Consensus 18 ~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~-~~~~~~L~~vi~lIfekAi~e-p~fs~~YA~LC~~l~~~l~~~~~ 95 (234)
T 3rk6_A 18 TLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGC-VTTDDALQELVELIYQQATSI-PNFSYMGARLCNYLSHHLTISPQ 95 (234)
T ss_dssp CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHSS-TTCHHHHHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCCCCc
Confidence 5688888899999977778888888888886531 111234777888888877653 457888899988886543 43
Q ss_pred ---HHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhc-CCCCC-
Q 006315 448 ---VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQT-EIPGV- 522 (651)
Q Consensus 448 ---f~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~~dG~~Ese~~YlkRMtGI~rLYAAIiqt-~~~g~- 522 (651)
|..+|+.+.+.. |- ..... ... +...-.|+-|.+++-+-+... ...+.
T Consensus 96 ~~~Fr~lLL~rcQ~e------Fe---------~~~~~------~~~------d~~~k~r~lg~i~FIgELf~~l~~~~~~ 148 (234)
T 3rk6_A 96 SGNFRQLLLQRCRTE------YE---------VKDQA------AKG------DEVTRKRFHAFVLFLGELYLNLEIKGTN 148 (234)
T ss_dssp TCCHHHHHHHHHHHH------HT---------THHHH------TSS------CHHHHHHHHHHHHHHHHHHHHCCEECTT
T ss_pred hhHHHHHHHHHHHHH------HH---------hhHHh------hhc------cHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 788888777664 11 00000 011 124557999999999998863 22110
Q ss_pred CCCCCcchHHHHHHHHhCC---CCCccchHHHHHHHHHHHHHHHHHHH
Q 006315 523 QNAHGLKEGWAWLARFLNA---LPANIYTAVALNAFLQLAGFALFKKY 567 (651)
Q Consensus 523 ~nP~gi~~~WkWLARILN~---~P~~~ita~vL~afLEvAG~~L~~~Y 567 (651)
..+....-.=..+-.+|+. .| .+-...++..+|..+|..|-..+
T Consensus 149 ~~~l~e~I~~~ci~~Ll~~l~~~p-~ee~vE~l~~lL~tvG~~Ld~~~ 195 (234)
T 3rk6_A 149 GQVTRADILQVGLRELLNALFSNP-MDDNLICAVKLLKLTGSVLEDAW 195 (234)
T ss_dssp SSEECCHHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHhhcc
Confidence 0122221222233444432 24 34567777889999999988754
No 3
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=85.53 E-value=5.4 Score=39.95 Aligned_cols=219 Identities=10% Similarity=0.105 Sum_probs=111.6
Q ss_pred cccccccccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHh-hCc
Q 006315 368 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVAS-QVP 446 (651)
Q Consensus 368 ~~~~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~-~~P 446 (651)
.+..++|+|+-.+|.||. +.+..|+.+|..+-.. .+ -.+.-++..|+.++-.+ |..+.-+|.++..|.. ..|
T Consensus 7 ~~~~l~r~v~giLNKLT~--~nf~~i~~ql~~~~i~--~~--~~l~~vi~~if~kA~~e-p~f~~~YA~Lc~~L~~~~~p 79 (260)
T 1hu3_A 7 KTQELFRKVRSILNKLTP--QMFNQLMKQVSGLTVD--TE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVP 79 (260)
T ss_dssp HHHHHHHHHHHHHTCSSC--CCHHHHHHHHTTCCCC--SH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHhcCC--CH--HHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhhCC
Confidence 456788999999999985 4566777766554211 22 23555566666655443 3356667778877765 355
Q ss_pred c---------HHHHHHHHhhhcceeecccccc--c--ccccc---ccHHHHHHHcCcccCCCcc-cchhhHHHHHHHHHH
Q 006315 447 Q---------VMDILLGEFHRACIYTVPKHIV--F--SEAAF---ESEEAYYKTIGYREEDGKI-ESLENYLSRLKSYMR 509 (651)
Q Consensus 447 e---------f~DILLArf~kkCP~lVP~~~~--~--~k~~~---qSeEey~K~mGYr~~dG~~-Ese~~YlkRMtGI~r 509 (651)
. |+.+|+-+++... --++... . ..... .+.++ .+.+. ..+ +.....-.|+-|.++
T Consensus 80 ~~~~~~~~~~Fr~~LL~rcq~eF--e~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~-----~e~ee~~~~~k~r~lg~i~ 151 (260)
T 1hu3_A 80 MADKPGNTVNFRKLLLNRCQKEF--EKDKADDDVFEKKQKELEAASAPEE-RTRLH-----DELEEAKDKARRRSIGNIK 151 (260)
T ss_dssp ---------CHHHHHHHHHHHHH--HHHTC------------------------------------CCSSHHHHHHHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHH--hcccchhhhHHHHhhhhcccCCHHH-HHHhh-----hHHHHHHHHHHHHHHhHHH
Confidence 4 5566655543321 0011000 0 00000 00000 00000 000 111245578999999
Q ss_pred HHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 006315 510 LYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAR 589 (651)
Q Consensus 510 LYAAIiqt~~~g~~nP~gi~~~WkWLARILN~~P~~~ita~vL~afLEvAG~~L~~~YG~QF~KLL~lI~~d~~p~L~~~ 589 (651)
+-+-+.... -.+..-....|-.+|.. | +.-..-+|..+|.++|..|-.--++. .|..+...+-..+...
T Consensus 152 FIgeLy~~~------~l~~~i~~~~l~~Ll~~-~-~e~~iE~l~~lL~tvG~~L~~~~~~~---~l~~~f~~l~~~~~~~ 220 (260)
T 1hu3_A 152 FIGELFKLK------MLTEAIMHDCVVKLLKN-H-DEESLECLCRLLTTIGKDLDFEKAKP---RMDQYFNQMEKIVKER 220 (260)
T ss_dssp HHHHHHTTT------CSCHHHHHHHHHHHHHS-C-SHHHHHHHHHHHHHHHHHHCCTTTHH---HHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcC------CCCHHHHHHHHHHHhCC-C-CHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHHHhCC
Confidence 999988643 23333455677777775 4 44567888899999999997522222 2332222222222222
Q ss_pred CCchhHHHHHHHHHHHHhc-ccccCC
Q 006315 590 EDSKLNLVIAEIQYYIEDK-KFLEEP 614 (651)
Q Consensus 590 ~~p~a~~~v~rLe~~Led~-~~l~eP 614 (651)
. -..+..-.|++.++-+ ..|.++
T Consensus 221 ~--ls~Rirfmi~~l~dLR~~~W~~~ 244 (260)
T 1hu3_A 221 K--TSSRIRFMLQDVIDLRLCNWVSR 244 (260)
T ss_dssp S--SCHHHHHHHHHHHHHHHTTTCC-
T ss_pred C--CCHHHHHHHHHHHHHHHcCCCCC
Confidence 1 2234455566666644 444443
No 4
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=82.16 E-value=19 Score=36.50 Aligned_cols=174 Identities=14% Similarity=0.153 Sum_probs=95.5
Q ss_pred cccccccccccccccccCcchhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhCc
Q 006315 368 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPL-CPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP 446 (651)
Q Consensus 368 ~~~~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~~~q-lP~~i~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~P 446 (651)
.+..++|+|+-.+|.||. +.+..|+.+|..+-.... ....-.|.-+++-|+.++-.+ |..+.-+|.++..|....|
T Consensus 32 ~~e~l~r~vkgiLNKLT~--~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~e-p~fs~~YA~Lc~~l~~~l~ 108 (284)
T 2vso_E 32 DKDEVERKMKSLLNKLTL--EMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDE-PHWSSMYAQLCGKVVKELN 108 (284)
T ss_dssp CHHHHHHHHHHHHHSCCS--TTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 466789999999999974 467788888887753210 011112444455555555433 3466677888887776544
Q ss_pred -c--------------HHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCccc----ch-----hhHHH
Q 006315 447 -Q--------------VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIE----SL-----ENYLS 502 (651)
Q Consensus 447 -e--------------f~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~~dG~~E----se-----~~Ylk 502 (651)
+ |..+|+.+++.. +-.... .+- .+.+ ++...| ++ ...-.
T Consensus 109 ~~i~~e~~~~k~g~~~Fr~~LL~rcq~e----Fe~~~~-~~~--~~~~----------~~~~~e~e~~~~e~~~~~~~k~ 171 (284)
T 2vso_E 109 PDITDETNEGKTGPKLVLHYLVARCHAE----FDKGWT-DKL--PTNE----------DGTPLEPEMMSEEYYAAASAKR 171 (284)
T ss_dssp TTCCBCC---CCTHHHHHHHHHHHHHHH----HHHCCC-SSC--C----------------------CCTTHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHH----Hhhhhh-hhh--hhcc----------ccchhhhhhhhhHHHHHHHHHH
Confidence 2 334444443322 111000 000 0000 000111 11 23446
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCC--CCccchHHHHHHHHHHHHHHHHHHH
Q 006315 503 RLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNAL--PANIYTAVALNAFLQLAGFALFKKY 567 (651)
Q Consensus 503 RMtGI~rLYAAIiqt~~~g~~nP~gi~~~WkWLARILN~~--P~~~ita~vL~afLEvAG~~L~~~Y 567 (651)
|+-|.+++-+-+..... .+..-....+-.+|+.. .+..-..-+|+.+|.++|..|-..-
T Consensus 172 r~lg~i~FIgeLyk~~~------l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~ 232 (284)
T 2vso_E 172 RGLGLVRFIGFLYRLNL------LTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDS 232 (284)
T ss_dssp HHHHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHhhHHHHHHHHHhccC------CcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999986431 22334556677777520 1345567888899999999986543
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.24 E-value=36 Score=36.93 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=10.4
Q ss_pred hHhhhhHHHHHhhHHHHHhHHHH
Q 006315 166 SENEQSNSALAQVEKDRDMRREM 188 (651)
Q Consensus 166 ~e~~~~~~~~~~~~k~~~~r~e~ 188 (651)
++.+.....+...+++.+.+++.
T Consensus 470 ~~~~~~~~~l~~~~~~i~~~~~~ 492 (597)
T 3oja_B 470 NEQIQQEQLLQGLHAEIDTNLRR 492 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 34444444444444444444443
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=77.49 E-value=29 Score=40.81 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=10.3
Q ss_pred HHhHHHHHHhhhHHHHHHHHHH
Q 006315 217 LKSQIEERKIRSDAAYEEAKRK 238 (651)
Q Consensus 217 ~~~q~~~r~~r~~aa~eea~r~ 238 (651)
.|-.+|-.||..+++.|++|++
T Consensus 684 a~g~Lerqki~d~a~aE~~r~~ 705 (861)
T 2zuo_A 684 ARGRLERQKILDQSEAEKARKE 705 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444445455554555444
No 7
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=75.29 E-value=7.7 Score=43.47 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=19.2
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhccccccccc
Q 006315 340 ALNIEQKR-LQKLKELDEENQSLKLSSNEDF 369 (651)
Q Consensus 340 al~~~~~R-~k~LKel~~~~~~lks~lkk~~ 369 (651)
.+..-++| .+.|+.|...+..++...+++=
T Consensus 508 ~~~ekn~~lq~qL~~L~~el~~~r~~~k~t~ 538 (575)
T 2i1j_A 508 TLAERNERLHNQLKALKQDLARSCDETKETA 538 (575)
T ss_dssp CHHHHCHHHHHHHHHHHHHHHTTBCGGGCCH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhcch
Confidence 34444455 5578888888888776555433
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=72.55 E-value=1.6e+02 Score=34.83 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=7.7
Q ss_pred ccceecccccccC
Q 006315 99 VKRFTCDALYLSE 111 (651)
Q Consensus 99 ~~~f~~~~~~l~~ 111 (651)
+-+|..|.|+++.
T Consensus 625 ~~~F~~N~lvits 637 (861)
T 2zuo_A 625 QAVFPQNGLVVSS 637 (861)
T ss_dssp CEECTTTCEEEEE
T ss_pred ceEEccCCeEEEE
Confidence 4556666666653
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.13 E-value=42 Score=45.03 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred CccHHHHHHHHhhhc
Q 006315 445 VPQVMDILLGEFHRA 459 (651)
Q Consensus 445 ~Pef~DILLArf~kk 459 (651)
.|-+..+|.-.+++.
T Consensus 2242 DP~L~pvL~k~~~k~ 2256 (3245)
T 3vkg_A 2242 DPVLNPVLNKEIRKK 2256 (3245)
T ss_dssp ---------------
T ss_pred chhHHHHHHHHHHhc
Confidence 344455555555444
No 10
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=64.42 E-value=99 Score=34.37 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=9.7
Q ss_pred cccCCCCCCCCCCcccccc
Q 006315 298 VSQDGACGRQPDDSSVIAG 316 (651)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~ 316 (651)
.+|.=.=..-|++...|.|
T Consensus 120 ~aQ~Lvf~sEpnA~lsi~~ 138 (497)
T 3iox_A 120 SAQNLVYDLEPNANLSLTT 138 (497)
T ss_dssp CCBCEECSCCTTCEEEEEE
T ss_pred hcccceecCCCCceEEEec
Confidence 4444444444566665654
No 11
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.82 E-value=27 Score=39.12 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=10.2
Q ss_pred HHhhHHHHHhHHHHhhhc
Q 006315 175 LAQVEKDRDMRREMDRKN 192 (651)
Q Consensus 175 ~~~~~k~~~~r~e~~r~~ 192 (651)
..++.+++..|.++++..
T Consensus 320 ~~~l~~~~~~~~~~~~~~ 337 (575)
T 2i1j_A 320 REKLQLEIAARERAEKKQ 337 (575)
T ss_dssp HTTCCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 344555566666666653
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=35.64 E-value=1.2e+02 Score=36.65 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhccCC
Q 006315 31 LSELNSLETRLNASS 45 (651)
Q Consensus 31 ~~e~~~~~~~~~~~~ 45 (651)
..-|+.|-.+|+...
T Consensus 663 ~~~l~~L~~~l~~t~ 677 (1184)
T 1i84_S 663 KEQLTKLMTTLRNTN 677 (1184)
T ss_dssp HHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHhcC
Confidence 345666666666554
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.41 E-value=7.9e+02 Score=29.60 Aligned_cols=9 Identities=44% Similarity=0.468 Sum_probs=3.6
Q ss_pred HHHHHHHhc
Q 006315 34 LNSLETRLN 42 (651)
Q Consensus 34 ~~~~~~~~~ 42 (651)
|+.|-.+|+
T Consensus 644 L~~Lm~~L~ 652 (1080)
T 2dfs_A 644 LHLLMETLN 652 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 14
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=28.47 E-value=3.7e+02 Score=25.08 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006315 222 EERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKR 293 (651)
Q Consensus 222 ~~r~~r~~aa~eea~r~e~~~~ee~~~q~~ak~eae~~a~~~ae~~~k~a~ea~~k~a~e~~e~e~~~~~~~ 293 (651)
.++.||.+|..+-.+=...+..+...=.+.|+++|+.......+++.+.+.....+....+...-+....++
T Consensus 3 ~~~~l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~a 74 (187)
T 3v6i_A 3 LEAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQA 74 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.14 E-value=2e+02 Score=34.74 Aligned_cols=12 Identities=8% Similarity=0.470 Sum_probs=6.7
Q ss_pred cccHHHHHHHHH
Q 006315 147 LGVKEEIRNLIS 158 (651)
Q Consensus 147 ~~~~e~~r~~~~ 158 (651)
+.+|--+|.++.
T Consensus 822 ~~iQ~~~r~~~~ 833 (1184)
T 1i84_S 822 FCIQYNVRSFMN 833 (1184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345666666543
No 16
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=27.09 E-value=6.9e+02 Score=27.81 Aligned_cols=9 Identities=22% Similarity=0.545 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 006315 194 TVYQRKIAE 202 (651)
Q Consensus 194 ~~~qr~~ae 202 (651)
..|+.+++|
T Consensus 30 a~Ye~~~ae 38 (497)
T 3iox_A 30 AAYEAAVAA 38 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.76 E-value=1.5e+02 Score=31.88 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=43.8
Q ss_pred hhhccccHHHHHHHHHHHHHHHHhHhhhhHHHHHhhHHHHH---------hHHHHhhhccHHHHHHHHHHH
Q 006315 143 HQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRD---------MRREMDRKNDTVYQRKIAEAL 204 (651)
Q Consensus 143 ~~~~~~~~e~~r~~~~~~e~~~~~e~~~~~~~~~~~~k~~~---------~r~e~~r~~~~~~qr~~ae~~ 204 (651)
+.|+.-+|+-|++++. .-..|+.-|..-++.|.|+|...+ -.+.+++++|...+-++.+.|
T Consensus 119 e~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL 188 (390)
T 1deq_A 119 RSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQL 188 (390)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHH
Confidence 5666667777777766 444556666777788888888764 346789999988888877765
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.46 E-value=1.6e+03 Score=30.75 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=8.9
Q ss_pred HHHHHHHHH-HHHHHHHHH
Q 006315 339 SALNIEQKR-LQKLKELDE 356 (651)
Q Consensus 339 sal~~~~~R-~k~LKel~~ 356 (651)
+.|.-|+.| ...++++..
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHH
Confidence 456666666 333444443
No 19
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=21.34 E-value=4.4e+02 Score=23.54 Aligned_cols=9 Identities=22% Similarity=0.003 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 006315 249 QEKVKAEAE 257 (651)
Q Consensus 249 q~~ak~eae 257 (651)
.+-+++.++
T Consensus 64 ~Et~ri~~e 72 (105)
T 3v6i_B 64 AETEALLAR 72 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444444
No 20
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=20.23 E-value=3.5e+02 Score=24.44 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 006315 246 KIRQEKVKAEAE 257 (651)
Q Consensus 246 ~~~q~~ak~eae 257 (651)
+.+|+|..|++|
T Consensus 36 rLKqAK~EA~~E 47 (119)
T 4efa_G 36 KLKQAKTDAAKE 47 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444333333
No 21
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=20.16 E-value=93 Score=32.16 Aligned_cols=7 Identities=14% Similarity=0.420 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 006315 27 FDALLSE 33 (651)
Q Consensus 27 ~~~~~~e 33 (651)
|++.+.+
T Consensus 106 f~~~~~~ 112 (340)
T 1v9d_A 106 FSEQVEN 112 (340)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4443433
No 22
>3cay_A LPD-12; alpha helix, acyl chains, detergent, amphiphilic, lipopeptide, SELF-assembling peptide, de novo protein; HET: O12 LMT; 1.20A {Synthetic} PDB: 3cba_A*
Probab=20.14 E-value=93 Score=21.16 Aligned_cols=11 Identities=45% Similarity=0.498 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 006315 269 RAALEAEKRAA 279 (651)
Q Consensus 269 k~a~ea~~k~a 279 (651)
|-++||++|++
T Consensus 12 kyaaeaaekaa 22 (27)
T 3cay_A 12 KYAAEAAEKAA 22 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
Done!