Query 006315
Match_columns 651
No_of_seqs 153 out of 203
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 21:44:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006315.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006315hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hu3a_ a.118.1.14 (A:) Eukary 86.5 0.51 3.7E-05 43.5 6.5 177 369-565 8-199 (243)
2 d1h2vc1 a.118.1.14 (C:29-290) 52.2 62 0.0045 30.0 12.1 130 412-581 37-174 (262)
3 d1uw4b_ a.118.1.14 (B:) Regula 21.0 2.7E+02 0.02 24.8 15.2 148 380-569 13-172 (248)
4 d1cqxa1 a.1.1.2 (A:1-150) Flav 11.7 2E+02 0.014 23.6 6.3 109 445-583 21-134 (150)
5 d1vf5c3 f.23.23.1 (C:250-286) 9.4 79 0.0058 21.7 2.1 16 502-517 4-19 (37)
6 d1sa0e_ a.137.10.1 (E:) Stathm 9.2 1.8E+02 0.013 24.1 5.1 9 104-112 16-24 (138)
7 d1outa_ a.1.1.2 (A:) Hemoglobi 8.8 3.7E+02 0.027 21.5 6.9 25 445-469 21-45 (142)
8 d1wgwa_ a.24.13.1 (A:) Signal 7.7 1.5E+02 0.011 23.8 3.6 55 370-425 8-66 (99)
9 d1v54l_ f.23.6.1 (L:) Mitochon 6.8 1.4E+02 0.01 21.3 2.6 20 520-539 6-25 (46)
10 d2nsfa1 a.213.1.4 (A:1-160) Mi 6.3 1.4E+02 0.01 24.4 2.9 21 21-41 40-60 (160)
No 1
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.48 E-value=0.51 Score=43.48 Aligned_cols=177 Identities=8% Similarity=0.051 Sum_probs=93.5
Q ss_pred ccccccccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhCcc-
Q 006315 369 FSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQ- 447 (651)
Q Consensus 369 ~~~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~Pe- 447 (651)
...++|+|+-.+|.||. +.+..|..+|..+-.. .+ -.+..++..|+..|-.+ |..+..+|.++..|...+|.
T Consensus 8 ~~~l~r~v~~lLNKLt~--~n~~~i~~ei~~l~~~--~~--~~l~~~v~~I~~kai~e-~~f~~~YA~Lc~~l~~~~~~~ 80 (243)
T d1hu3a_ 8 TQELFRKVRSILNKLTP--QMFNQLMKQVSGLTVD--TE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVPM 80 (243)
T ss_dssp HHHHHHHHHHHHTCSSC--CCHHHHHHHHTTCCCC--SH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHcc--CH--HHHHHHHHHHHHHHHcC-ccccHHHHHHHHHHHHhcCcc
Confidence 34678888888999974 4566777777665322 22 23555666666666543 35777888888888777664
Q ss_pred ---------HHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCccc----CCCcccchhhHHHHHHHHHHHHHHH
Q 006315 448 ---------VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE----EDGKIESLENYLSRLKSYMRLYAAL 514 (651)
Q Consensus 448 ---------f~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~----~dG~~Ese~~YlkRMtGI~rLYAAI 514 (651)
|+..|+.+++.. +-...................++... .+...+.....-.|+.|++++.+-+
T Consensus 81 ~~~~~~~~~F~~~Ll~~~q~~----F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeL 156 (243)
T d1hu3a_ 81 ADKPGNTVNFRKLLLNRCQKE----FEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGEL 156 (243)
T ss_dssp --------CHHHHHHHHHHHH----HHHHTC------------------------------CCSSHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHH----HHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 555665555332 11110000000000000000000000 0011122345678999999999998
Q ss_pred HhcCCCCCCCCCCcchHHHH-HHHHhCCCCCccchHHHHHHHHHHHHHHHHH
Q 006315 515 IQTEIPGVQNAHGLKEGWAW-LARFLNALPANIYTAVALNAFLQLAGFALFK 565 (651)
Q Consensus 515 iqt~~~g~~nP~gi~~~WkW-LARILN~~P~~~ita~vL~afLEvAG~~L~~ 565 (651)
..... .+ ...... +..++.. | .....-+|..+|.++|..|-.
T Consensus 157 y~~~~------v~-~~~i~~~l~~Ll~~-~-~e~~ie~l~~lL~~~G~~L~~ 199 (243)
T d1hu3a_ 157 FKLKM------LT-EAIMHDCVVKLLKN-H-DEESLECLCRLLTTIGKDLDF 199 (243)
T ss_dssp HTTTC------SC-HHHHHHHHHHHHHS-C-SHHHHHHHHHHHHHHHHHHCC
T ss_pred Hcccc------ch-HHHHHHHHHHhcCC-C-CHHHHHHHHHHHHHHHHHHhc
Confidence 86542 11 123333 3334433 3 344677888899999998843
No 2
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.16 E-value=62 Score=30.01 Aligned_cols=130 Identities=12% Similarity=0.177 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhccC-CCCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccC
Q 006315 412 LATFSKKVVSRCET-PDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 490 (651)
Q Consensus 412 Ln~lAKaIVsQaEt-~~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~~ 490 (651)
-+.|.+.|+.++.. |. ++++ +|.++..+-..+|+|+..++-+++..- ..+++
T Consensus 37 ~~~il~~l~~~~~~~P~-k~~~-yA~Lv~llN~~~~e~g~~~l~~~~~~f------------------~~~l~------- 89 (262)
T d1h2vc1 37 KSKILRLLCTVARLLPE-KLTI-YTTLVGLLNARNYNFGGEFVEAMIRQL------------------KESLK------- 89 (262)
T ss_dssp HHHHHHHHHHHHHHCGG-GHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHH------------------HHHHH-------
T ss_pred HHHHHHHHHHHHHhCcc-hHHH-HHHHHHHHccCcHHHHHHHHHHHHHHH------------------HHHHH-------
Confidence 33344444443333 32 3344 888888888899999999998886652 11111
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCC-----CCc--cchHHHHHHHHHHHHHHH
Q 006315 491 DGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNAL-----PAN--IYTAVALNAFLQLAGFAL 563 (651)
Q Consensus 491 dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~g~~nP~gi~~~WkWLARILN~~-----P~~--~ita~vL~afLEvAG~~L 563 (651)
.|.| ++..+++++.+.++... -++....-..|..++... |.. +..+.++-..|--+|..+
T Consensus 90 ~~~~-------~~~~~llrFla~L~n~~------Vv~~~~i~~ll~~ll~~~~e~~~~~~~~d~~~~~vL~~LP~~g~~l 156 (262)
T d1h2vc1 90 ANNY-------NEAVYLVRFLSDLVNCH------VIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKEL 156 (262)
T ss_dssp TTCH-------HHHHHHHHHHHHHHHTT------SBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hCCH-------HHHHHHHHHHHHHccCC------CCcHhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 1222 46778999999986432 233445667777777431 211 112333334566789999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006315 564 FKKYKSQFRKILDNIYDN 581 (651)
Q Consensus 564 ~~~YG~QF~KLL~lI~~d 581 (651)
.+....++..||.-|..-
T Consensus 157 ~~~~~~~~~~ll~~i~~y 174 (262)
T d1h2vc1 157 YEKKDAEMDRIFANTESY 174 (262)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 999999999999876543
No 3
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.98 E-value=2.7e+02 Score=24.81 Aligned_cols=148 Identities=8% Similarity=0.009 Sum_probs=83.5
Q ss_pred cccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhCccHHHHHHHHhhhc
Q 006315 380 IRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRA 459 (651)
Q Consensus 380 IGQLTns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kk 459 (651)
+|.||.. .+..|..+|.++=-+ -| =.++.+.+.|++-+-.+ +...--+|.+++.|...+|+|+..++-.+..
T Consensus 13 ~n~Ls~~--n~~~i~~~i~kl~~~--n~--e~~~~li~~i~~~~~~~-~~~i~~yA~l~a~L~~~~~~f~~~~id~l~e- 84 (248)
T d1uw4b_ 13 YKDLSKV--TTEKVLRQMRKLPWQ--DQ--EVKDYVICCMINIWNVK-YNSIHCVANLLAGLVLYQEDVGIHVVDGVLE- 84 (248)
T ss_dssp HTTCSTT--SHHHHHHHHHTSCTT--SH--HHHHHHHHHHHCGGGSC-GGGHHHHHHHHHHHTTTCHHHHHHHHHHHHH-
T ss_pred HhhCCHh--HHHHHHHHHHHCCCC--CH--HHHHHHHHHHhhhhcCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence 4677654 344555555544111 12 24677777777654443 2344566778888888899987777655422
Q ss_pred ceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHh
Q 006315 460 CIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFL 539 (651)
Q Consensus 460 CP~lVP~~~~~~k~~~qSeEey~K~mGYr~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~g~~nP~gi~~~WkWLARIL 539 (651)
+..+ |+.. ....+.+|+-|.+++-+-+..... .+....-..+-.+|
T Consensus 85 --------------------~f~~--~~e~------~~~~~~~r~~~~v~figeLy~~~~------v~~~~i~~~l~~Ll 130 (248)
T d1uw4b_ 85 --------------------DIRL--GMEV------NQPKFNQRRISSAKFLGELYNYRM------VESAVIFRTLYSFT 130 (248)
T ss_dssp --------------------HHHH--HHHH------CCGGGHHHHHHHHHHHHHHHHTTS------SCHHHHHHHHHHHH
T ss_pred --------------------HHHH--HHHH------hhHHHHHHHHHHHHHHHHHHHHcc------CcHHHHHHHHHHHH
Confidence 1111 1111 122567888899999888876431 22222233333333
Q ss_pred C----C-------CCC-ccchHHHHHHHHHHHHHHHHHHHHH
Q 006315 540 N----A-------LPA-NIYTAVALNAFLQLAGFALFKKYKS 569 (651)
Q Consensus 540 N----~-------~P~-~~ita~vL~afLEvAG~~L~~~YG~ 569 (651)
. . .|. +.....++..+|+++|..|-.-.++
T Consensus 131 ~~~~~~~~~~~~~d~~~d~~rIe~l~~lL~t~G~~l~~~~~~ 172 (248)
T d1uw4b_ 131 SFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSK 172 (248)
T ss_dssp HTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHHHH
T ss_pred hcCCCcccccccCCCCcchhHHHHHHHHHHHHhHHhcCccch
Confidence 1 1 011 2234778999999999988765554
No 4
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=11.69 E-value=2e+02 Score=23.56 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=62.5
Q ss_pred CccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 006315 445 VPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQN 524 (651)
Q Consensus 445 ~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~g~~n 524 (651)
..+|+..|+.+|...+|-+-++++.. +. ....+..|+.+.+. .+|...+ +
T Consensus 21 ~~~~~~~ff~rlF~~~P~~~~~F~~~--------------------~~---~~~~h~~~~~~~l~--~~V~~Ld-----~ 70 (150)
T d1cqxa1 21 GYDIIKCFYQRMFEAHPELKNVFNMA--------------------HQ---EQGQQQQALARAVY--AYAENIE-----D 70 (150)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGTSCCS--------------------CC---CHHHHHHHHHHHHH--HHHHHTT-----C
T ss_pred HHHHHHHHHHHHHHHCHhHHHHhhhh--------------------hh---hhHHHHHHHHHHHH--HHHHhcc-----C
Confidence 44688889999999999998887421 00 11123334433332 2333222 2
Q ss_pred CCCcchHHHHHHHH---hCCCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006315 525 AHGLKEGWAWLARF---LNALPAN--IYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFL 583 (651)
Q Consensus 525 P~gi~~~WkWLARI---LN~~P~~--~ita~vL~afLEvAG~~L~~~YG~QF~KLL~lI~~d~~ 583 (651)
|-.+....++|++. .+..|.+ .+..+++.++=+..|..+-......|.|++.+|..-++
T Consensus 71 ~~~l~~~l~~lg~~H~~~gV~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~li 134 (150)
T d1cqxa1 71 PNSLMAVLKNIANKHASLGVKPEQYPIVGEHLLAAIKEVLGNAATDDIISAWAQAYGNLADVLM 134 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHH
Confidence 22344556666663 4443332 33455666666666666666667777888888877665
No 5
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.42 E-value=79 Score=21.74 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 006315 502 SRLKSYMRLYAALIQT 517 (651)
Q Consensus 502 kRMtGI~rLYAAIiqt 517 (651)
.|+.|++.++++++.+
T Consensus 4 ~Rv~gl~~F~~~v~la 19 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLA 19 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5999999999999874
No 6
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.23 E-value=1.8e+02 Score=24.12 Aligned_cols=9 Identities=11% Similarity=0.028 Sum_probs=4.5
Q ss_pred cccccccCC
Q 006315 104 CDALYLSES 112 (651)
Q Consensus 104 ~~~~~l~~~ 112 (651)
|++|.|.+-
T Consensus 16 ~fevil~~p 24 (138)
T d1sa0e_ 16 SFEVILKPP 24 (138)
T ss_dssp EEECCCSCC
T ss_pred ceEeeeCCC
Confidence 334566643
No 7
>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=8.83 E-value=3.7e+02 Score=21.55 Aligned_cols=25 Identities=20% Similarity=-0.043 Sum_probs=21.6
Q ss_pred CccHHHHHHHHhhhcceeecccccc
Q 006315 445 VPQVMDILLGEFHRACIYTVPKHIV 469 (651)
Q Consensus 445 ~Pef~DILLArf~kkCP~lVP~~~~ 469 (651)
..++|..|+.+|...+|.+-++++.
T Consensus 21 ~~~~G~~~~~rLF~~~P~~~~~F~~ 45 (142)
T d1outa_ 21 ADVVGAEALGRMLTAYPQTKTYFSH 45 (142)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGGTT
T ss_pred HHHHHHHHHHHHHHHChhHHHHccc
Confidence 4468999999999999999999854
No 8
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.67 E-value=1.5e+02 Score=23.77 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=38.9
Q ss_pred cccccccccccccccCc----chhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccC
Q 006315 370 SGYEKDISRLIRQIRGL----KDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCET 425 (651)
Q Consensus 370 ~~~kRqI~~kIGQLTns----~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKaIVsQaEt 425 (651)
.++-+.|+..|+.|++. .+.|.....+|...|-+..++..+ ..-|.+.|-..+..
T Consensus 8 a~L~~~i~~a~~~l~~~~~i~E~~I~~~l~eI~~ALLeADVn~~v-V~~f~~~Ik~k~~~ 66 (99)
T d1wgwa_ 8 ADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKL-VKQLRENVKSAIDL 66 (99)
T ss_dssp SHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTTCCHHH-HHHHHHHHHTTSCC
T ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHhc
Confidence 34566777777777654 467999999999999887887664 45566666666654
No 9
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.82 E-value=1.4e+02 Score=21.28 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=16.0
Q ss_pred CCCCCCCCcchHHHHHHHHh
Q 006315 520 PGVQNAHGLKEGWAWLARFL 539 (651)
Q Consensus 520 ~g~~nP~gi~~~WkWLARIL 539 (651)
||..-||++++-|+-+|.++
T Consensus 6 PG~NLPFsv~Nk~rLla~m~ 25 (46)
T d1v54l_ 6 PGKNIPFSVENKWRLLAMMT 25 (46)
T ss_dssp TTTSSSSCCSSHHHHHHHHH
T ss_pred CCCCCCccchhHHHHHHHHH
Confidence 45566999999999888764
No 10
>d2nsfa1 a.213.1.4 (A:1-160) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=6.33 E-value=1.4e+02 Score=24.36 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHh
Q 006315 21 PEPDWSFDALLSELNSLETRL 41 (651)
Q Consensus 21 p~p~w~~~~~~~e~~~~~~~~ 41 (651)
|+|.||..+||.=|...+..+
T Consensus 40 ~c~gWtvrdlv~Hl~~~~~~~ 60 (160)
T d2nsfa1 40 LLEGWTRSHLIAHVAYNAIAL 60 (160)
T ss_dssp SSTTCBHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Done!