BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006316
(650 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 1279 bits (3309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/652 (99%), Positives = 650/652 (99%), Gaps = 2/652 (0%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF
Sbjct: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP
Sbjct: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES
Sbjct: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG
Sbjct: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER
Sbjct: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI
Sbjct: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGP 418
SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL QFSQMRPPVGP
Sbjct: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGP 420
Query: 419 RMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPG 478
RMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPG
Sbjct: 421 RMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPG 480
Query: 479 GRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGM 538
GRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGM
Sbjct: 481 GRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGM 540
Query: 539 PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ
Sbjct: 541 PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 600
Query: 599 TEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
TEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS
Sbjct: 601 TEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 652
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 1096 bits (2834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/657 (81%), Positives = 593/657 (90%), Gaps = 22/657 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQVQPQAPV+ A NG+ +NG QFV TSLYVGDL+ +V ++QLYDLF
Sbjct: 1 MAQVQVQPQAPVS-------APNGVVSNG----VNQFVPTSLYVGDLEQNVTETQLYDLF 49
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ GQVVS+RVCRDL++RRSLGYGYVNYN H+A +A++ LNFTP+NGKPIRIMYSYRDP
Sbjct: 50 NQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIEVLNFTPVNGKPIRIMYSYRDP 109
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
TIRKSG GNI+IKNLDK+IDNKALHDTFS FG+ILSCKVATDSLGQS GYGFVQFDNEES
Sbjct: 110 TIRKSGTGNIYIKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEES 169
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
AK+AIDKLNGMLLNDKQV+VGPFLRKQERES DK FNNVYVKNLSETTTE+DLKKIFG
Sbjct: 170 AKNAIDKLNGMLLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEEDLKKIFG 229
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS VMRD +GKS+CFGFVNF++PDDAA+SVEALNGK FD+KEWYVGKAQKK ER
Sbjct: 230 EYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSER 289
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELKG+FEQ+LKET DKF+GLNLYVKNLDDSI+DDKLKELFSEFGTITSCKVMRDPNG+
Sbjct: 290 EVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGV 349
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----P 414
SRGSGFVAFSTAEEAS+ALTEMNGKMVVSKPLYVALAQRKEERRARL Q+SQ+R P
Sbjct: 350 SRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQIRPAMAP 409
Query: 415 PVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQ 473
P+GPRMP+YPP PG+G QLFYGQGPP I+PPQPGFGYQQQLVPGMRPN+FVPMVQPGQQ
Sbjct: 410 PIGPRMPIYPPGTPGIGHQLFYGQGPPAIVPPQPGFGYQQQLVPGMRPNFFVPMVQPGQQ 469
Query: 474 NQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPY 533
QRP GRRSG G + Q QQP+P+MQP+MLPRGR+YRYPPG ++PDVP+AG+PGGMLP PY
Sbjct: 470 AQRPSGRRSGAGAV-QPQQPLPMMQPQMLPRGRVYRYPPGRSMPDVPMAGLPGGMLPVPY 528
Query: 534 DIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGML 593
D+GGMPFRD AFSQP+QTGALA+ALANA PEQQRTLLGENLYPLVDQLEH+NAAKVTGML
Sbjct: 529 DMGGMPFRDGAFSQPVQTGALATALANAMPEQQRTLLGENLYPLVDQLEHENAAKVTGML 588
Query: 594 LEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
LEMDQTEVLHLLESPE+LKAKVAEAMEVLR V QQ SPTDR+A+LSLND++VS
Sbjct: 589 LEMDQTEVLHLLESPESLKAKVAEAMEVLRTVQQQVN---SPTDRMATLSLNDSLVS 642
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 1086 bits (2808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/657 (82%), Positives = 599/657 (91%), Gaps = 22/657 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
M+QVQ QPQ PV+ A G+A+NGG QFVSTSLYVGDL+ +V ++QLYDLF
Sbjct: 1 MSQVQSQPQGPVS-------APVGMASNGG----NQFVSTSLYVGDLEQNVTETQLYDLF 49
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQ+VS+RVCRDL++RRSLGYGYVNYN H+A +AL+ LNFTP+NGKPIRIMYSYRDP
Sbjct: 50 NQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALEVLNFTPVNGKPIRIMYSYRDP 109
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
TIRKSGAGNI+IKNLDK+IDNKALHDTFS FGNILSCKVATDS GQS GYGFVQFDNEES
Sbjct: 110 TIRKSGAGNIYIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEES 169
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
AK+AIDKLNGMLLNDKQV+VGPFLR+QERES DKT+FNNVYVKNLSETTTE+DLKKIFG
Sbjct: 170 AKNAIDKLNGMLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFG 229
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS VMRD DGKS+CFGFVNF++PDDAARSVEALNGK FD+KEWYVGKAQKK ER
Sbjct: 230 EYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGKAQKKSER 289
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELKG+FEQ+LKET DKFEGLNLYVKNLDDSI+DDKLKELFSEFGTITSCKVMRDPNG+
Sbjct: 290 EVELKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGV 349
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----P 414
S+GSGFVA+STAEEASKALTEMNGKM+VSKPLYVALAQRKEERRARL QFSQMR P
Sbjct: 350 SKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPAMAP 409
Query: 415 PVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQ 473
VGPRMPMYP PG+GQQLFYGQGPP I+PPQPGFGYQQQLVPGMRPN+FVPMVQPGQQ
Sbjct: 410 AVGPRMPMYPHGTPGIGQQLFYGQGPPAIVPPQPGFGYQQQLVPGMRPNFFVPMVQPGQQ 469
Query: 474 NQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPY 533
QRP GRRSG GP+ Q QQP+P+MQP+MLPRGR+YRYPPG ++PDVP+AG+PGGMLP PY
Sbjct: 470 AQRPSGRRSGAGPV-QPQQPLPMMQPQMLPRGRVYRYPPGRSMPDVPMAGLPGGMLPVPY 528
Query: 534 DIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGML 593
D+GGMPFRD AFSQPMQTGALA+ALANA+PEQQRTLLGENLYPLVDQLEH+NAAKVTGML
Sbjct: 529 DMGGMPFRDGAFSQPMQTGALATALANATPEQQRTLLGENLYPLVDQLEHENAAKVTGML 588
Query: 594 LEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
LEMDQTEVLHLLESPE+L+AKVAEAMEVLR V QQQA SPT+R+A+LSLN+N+VS
Sbjct: 589 LEMDQTEVLHLLESPESLEAKVAEAMEVLRTV-QQQAN--SPTNRMATLSLNENLVS 642
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/629 (81%), Positives = 562/629 (89%), Gaps = 16/629 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QFVSTSLYVGDL+ +V DS LYDLF Q+G VVSVRVCRDLSTRRSLGYGYVNY +A
Sbjct: 28 QFVSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAA 87
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD LNFTPLNGKPIRIMYS+RDP+IR+SG NIFIKNLDK+IDNKAL+DTFSTFG IL
Sbjct: 88 RALDMLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAIL 147
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCK+ATD+ GQS+GYGFVQFDNEESAK+A DKLNGMLLNDKQV+VGPF+RKQERES +K
Sbjct: 148 SCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNK 207
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
T+FNNVYVKNL E+TT++DLK IFGE+G ITS VM+D DGKSKCFGFVNF++ DDAARS
Sbjct: 208 TKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARS 267
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALNGKKFDDKEWYVGKAQKK ERE+ELKG+FEQSLKE DKF+GLNLYVKNLDDSI+D
Sbjct: 268 VEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIAD 327
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
DKL+ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS+AL +MNGKMV SKPLYVA
Sbjct: 328 DKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVA 387
Query: 396 LAQRKEERRARL--QFSQMRPP-----VGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQP 447
LAQRKE+RRARL QFSQMRP VGPRM MYPP APGLGQQLFYGQGPP +IPPQP
Sbjct: 388 LAQRKEDRRARLQAQFSQMRPAAMAPSVGPRMSMYPPGAPGLGQQLFYGQGPPALIPPQP 447
Query: 448 GFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM 501
GFGYQ QLVPGMR PN+FVPMVQPGQ NQRPGGRRSGTGP+QQ QQP+PLMQ +M
Sbjct: 448 GFGYQHQLVPGMRPGAAPMPNFFVPMVQPGQPNQRPGGRRSGTGPVQQTQQPLPLMQQQM 507
Query: 502 LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANA 561
LPRGR+YRYPPG N+ DVP+ GVPGGML PYD+ GMPFRDAA SQPM GALA+ALANA
Sbjct: 508 LPRGRVYRYPPGRNMADVPIPGVPGGMLSAPYDMAGMPFRDAAVSQPMPIGALATALANA 567
Query: 562 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
P+QQRTLLGENLYPLVDQLEH+ AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV
Sbjct: 568 PPDQQRTLLGENLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 627
Query: 622 LRNVAQQQATGPSPTDRVASLSLNDNIVS 650
LRNVAQQQA +PTDR+ASLSLND + S
Sbjct: 628 LRNVAQQQAN--NPTDRMASLSLNDTLTS 654
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/662 (75%), Positives = 558/662 (84%), Gaps = 30/662 (4%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQV PQ + A N QFV+TSLYVGDLD +V D+QLYDLF
Sbjct: 1 MAQVQVPPQNAIPGPNGGGAAGN------------QFVTTSLYVGDLDPNVTDAQLYDLF 48
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL++RRSLGYGYVN++ +A RALD LNFTPLN +PIRIMYS+RDP
Sbjct: 49 NQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDP 108
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG GNIFIKNLD++ID+KALHDTFSTFGNILSCKVATDS GQS+GYGFVQFDNEES
Sbjct: 109 SIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEES 168
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AI+KLNGMLLNDKQV+VGPFLRKQERESTADK +FNNV+VKNLSE+TT+D+LK +FG
Sbjct: 169 AQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFG 228
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD DGKSKCFGFVNF++ DDAAR+VEALNGKKFDDKEWYVGKAQKK ER
Sbjct: 229 EFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSER 288
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK +FEQS+KE ADK++G NLYVKNLDDS+ DDKLKELFS FGTITSCKVMRDPNGI
Sbjct: 289 ENELKQRFEQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGI 348
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
SRGSGFVAFST +EAS+AL EMNGKMVVSKPLYV LAQRKE+RRARL QF+QMR
Sbjct: 349 SRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMP 408
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVP 466
P VGPR+PMYPP PG+GQQ+FY QGPP IIP QPGFGYQQQLVPGMR PN+FVP
Sbjct: 409 PSVGPRVPMYPPGGPGIGQQIFYAQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVP 468
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPG 526
MVQ Q Q TG +QQ+QQP+P+M +MLPRGR+YRYPPG +PDV + GV G
Sbjct: 469 MVQ--QGQQGQRPGGRRTGAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGMPDVSMPGVAG 526
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
GM PYD+GGMP RDA+ SQ + GALA+ALANASPEQQRT+LGENLYPLV+QLE DNA
Sbjct: 527 GMFSVPYDVGGMPLRDASISQQIPVGALATALANASPEQQRTMLGENLYPLVEQLEPDNA 586
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRNVAQQQA G + D++ASLSLND
Sbjct: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTA--DQLASLSLND 644
Query: 647 NI 648
N+
Sbjct: 645 NL 646
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/664 (76%), Positives = 564/664 (84%), Gaps = 27/664 (4%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQV PQ + A QFV+TSLYVGDLD +V D+QLYDLF
Sbjct: 1 MAQVQVPPQNAMPGPNGGGGAGG---------AGNQFVTTSLYVGDLDPNVTDAQLYDLF 51
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL++RRSLGYGYVN++ +A RALD LNFTPLN +PIRIMYS+RDP
Sbjct: 52 NQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDP 111
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG GNIFIKNLD++ID+KALHDTFSTFGNILSCKVATDS GQS+GYGFVQFDNEES
Sbjct: 112 SIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEES 171
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AI+KLNGMLLNDKQV+VGPFLRKQERES ADK +FNNV+VKNLSE+TT+D+LK FG
Sbjct: 172 AQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFG 231
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD DGKSKCFGFVNF++ DDAAR+VEALNGK FDDKEWYVGKAQKK ER
Sbjct: 232 EFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSER 291
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK +FEQS+KE ADK++G NLYVKNLDDSI D+KLKELFS FGTITSCKVMRDPNG+
Sbjct: 292 ENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGL 351
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
SRGSGFVAFST EEAS+AL EMNGKMVVSKPLYV LAQRKE+RRARL QF+QMR
Sbjct: 352 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMP 411
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVP 466
P VGPR+PMYPP PG+GQQLFY QGPP IIP QPGFGYQQQL+PGMR PN+FVP
Sbjct: 412 PSVGPRVPMYPPGGPGIGQQLFYSQGPPAIIPSQPGFGYQQQLMPGMRPGAAPVPNFFVP 471
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPG 526
MVQ GQQ QRPGGRR G +QQ+QQP+P+M +MLPRGR+YRYPPG IPDVP+ GV G
Sbjct: 472 MVQQGQQGQRPGGRRPGA--VQQSQQPVPMMPQQMLPRGRVYRYPPGRGIPDVPIPGVAG 529
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
GM PYD+GGMP RDA+ SQ + GALA+ALANASPEQQRT+LGENLYPLV+QLE DNA
Sbjct: 530 GMFSVPYDVGGMPLRDASISQQIPVGALATALANASPEQQRTMLGENLYPLVEQLEPDNA 589
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRNVAQQQA G + D++ASLSLND
Sbjct: 590 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTA--DQLASLSLND 647
Query: 647 NIVS 650
N+VS
Sbjct: 648 NLVS 651
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/664 (76%), Positives = 567/664 (85%), Gaps = 40/664 (6%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+Q A A P NG+AN + SLYVGDLD+++ DSQLYDLF
Sbjct: 1 MAQIQ-------AAVAGP----NGVAN-----------TASLYVGDLDVNITDSQLYDLF 38
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
Q GQV+SVRVCRDLSTRRSLGYGYVNY+ +A RALD LNFTPLNGKPIRIMYS+RDP
Sbjct: 39 IQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDP 98
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG NIFIKNLDKSIDNKALHDTFS FGNILSCK+ATD GQS+GYGFVQFDNEES
Sbjct: 99 SIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEES 158
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQV+VG FLRKQERE+ +KT+FNNVYVKNLSE+TTE+DLK IFG
Sbjct: 159 AQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFG 218
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFGIITS VMRD DGKSKCFGFVNF++ DDAA +VEALNGKKFD+KEWYVGKAQKKYER
Sbjct: 219 EFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYER 278
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELKG+FEQS+KE DKF+G+NLY+KNLDDSI DDKLKELFSEFGTITSCKVMRDP+GI
Sbjct: 279 ELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGI 338
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
SRGSGFVAFST+EEAS+ALTEMNGKMVVSKPLYVALAQRKEERRARL QFSQMR
Sbjct: 339 SRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMA 398
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVP 466
P V PRMPMYPP APGLGQQLFYGQGPP IIPPQ GFGYQQQLVPGMR PN+FVP
Sbjct: 399 PSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVP 458
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR-GRIYRYPPGCNIPDVPVAGVP 525
+VQ Q + G R G GP+QQ QQP+PLMQ +MLPR GR+YRYPPG N+PDVP+ GV
Sbjct: 459 LVQ-QGQQGQRPGGRRGAGPVQQNQQPVPLMQQQMLPRGGRVYRYPPGRNMPDVPMPGVA 517
Query: 526 GGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDN 585
GGML PYD+GG+P RDAA QPM ALASALANA+P+QQRT+LGE+LYPLVDQLEH+
Sbjct: 518 GGMLSIPYDMGGVPLRDAAIGQPMPISALASALANATPDQQRTMLGESLYPLVDQLEHEM 577
Query: 586 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLN 645
AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM+VLRNVAQQQA SPT+++ASLSLN
Sbjct: 578 AAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQAN--SPTEQLASLSLN 635
Query: 646 DNIV 649
D++V
Sbjct: 636 DSLV 639
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/664 (73%), Positives = 566/664 (85%), Gaps = 24/664 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MA++QVQ Q+PV+ A P G+AN +A QFV+TSLYVGDLD +VNDSQLYDLF
Sbjct: 1 MAEIQVQHQSPVSAA---PPPNGGVAN--APNNANQFVTTSLYVGDLDQNVNDSQLYDLF 55
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL+TRRSLGYGYVN++ +A RALD LNFTPLN + IRIMYS+RDP
Sbjct: 56 NQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRSIRIMYSHRDP 115
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG NIFIKNLDK+ID+KALHDTFS+FG ILSCK+ATD+ G S+GYGFVQFDNEE+
Sbjct: 116 SLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEA 175
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQV+VG FLRKQ+RE+ KT+FNNVYVKNLSE+TT+++L FG
Sbjct: 176 AQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFG 235
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS +MRDADGKS+CFGFVNF++PDDAA++VE LNGKKFDDKEWYVGKAQKK ER
Sbjct: 236 EYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSER 295
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELKG+FEQS+KE ADK+ GLNLY+KNLDD+ISD+KLKE+F+++GTITSCKVMRDP GI
Sbjct: 296 EQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGI 355
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
SRGSGFVAFST EEA++AL EMNGKM KPLYVALAQRKEERRARL QFSQMR
Sbjct: 356 SRGSGFVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFSQMRPVAIT 415
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVP 466
P V PRMP+YPP APGLGQQ YGQGPP ++PPQ GFGYQQQLVPGMR P++FVP
Sbjct: 416 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVP 475
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPG 526
MVQ GQQ QRP GRR GTGP+QQ QQP+P+MQ +MLPRGR+YRYPPG N+ DVP+ G
Sbjct: 476 MVQQGQQGQRPVGRR-GTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQVAAG 534
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
GML PYD+GG+P RDA QPM ALA+ALANA PEQQRT+LGE LYPLVDQLEHD+A
Sbjct: 535 GMLSVPYDMGGLPMRDAV-GQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDSA 593
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
AKVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAM+VLRNVAQQQ +P D++ASLSLND
Sbjct: 594 AKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQT---NPADQLASLSLND 650
Query: 647 NIVS 650
N+VS
Sbjct: 651 NLVS 654
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/665 (74%), Positives = 563/665 (84%), Gaps = 31/665 (4%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQV QPQ P + A PA NG AN Q V+TSLYVGDLD++V DSQLYDLF
Sbjct: 1 MAQVPPQPQVPNSGA---DPAANGGAN--------QHVTTSLYVGDLDVNVTDSQLYDLF 49
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL++RRSLGYGYVNY+ +A+RALD LNFTPLNG PIR+MYS+RDP
Sbjct: 50 NQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDP 109
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG+GNIFIKNLDK+ID+KALHDTFS FG+ILSCKVATDS GQS+G+GFVQFD EE+
Sbjct: 110 SVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEA 169
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A AI+KLNGMLLNDKQVFVGPFLRKQERES ++KT+FNNV+VKNL+ETT+E+DLK +FG
Sbjct: 170 ALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFG 229
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD +GKSKCFGFVNF++ DDAARSVEALNGKK D KEWYVGKAQKK ER
Sbjct: 230 EFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSER 289
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELK +FEQS+KE ADK++G NLYVKNLDDSI DDKLKELF+ FGTITSCKVMRDPNGI
Sbjct: 290 EVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGI 349
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRP---- 414
SRGSGFVAFS+ EEA++AL EMNG+M+VSKPLYVALAQRKE+RRARL QFSQM+P
Sbjct: 350 SRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMA 409
Query: 415 -PVGPR-MPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFV 465
V PR MPMYPP PG+GQQ+FYGQ PP II QPGFGYQQQL+PGMR PN+FV
Sbjct: 410 SSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFV 469
Query: 466 PMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVP 525
PMVQ GQQ QR GGRR+G +QQ QQP+PLMQ +MLPRGR+YRYPPG +PD+P+ GV
Sbjct: 470 PMVQQGQQGQRSGGRRAGA--IQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVA 527
Query: 526 GGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDN 585
GGM PY++GGMP RDA QP+ GALASALANA+P+QQRT+LGENLYPLV+QLE DN
Sbjct: 528 GGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDN 587
Query: 586 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLN 645
AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR+VAQQ D++ASLSL
Sbjct: 588 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQSGNA---ADQLASLSLT 644
Query: 646 DNIVS 650
DN+ S
Sbjct: 645 DNLDS 649
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/665 (74%), Positives = 562/665 (84%), Gaps = 31/665 (4%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQV QPQ P + A PA NG AN Q V+TSLYVGDLD++V DSQLYDLF
Sbjct: 1 MAQVPPQPQVPNSGA---DPAANGGAN--------QHVTTSLYVGDLDVNVTDSQLYDLF 49
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL++RRSLGYGYVNY+ +A+RALD LNFTPLNG PIR+MYS+RDP
Sbjct: 50 NQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDP 109
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG+GNIFIKNLDK+ID+KALHDTFS FG+ILSCKVATDS GQS+G+GFVQFD EE+
Sbjct: 110 SVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEA 169
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A AI+KLNGMLLNDKQVFVGPFLRKQERES ++KT+FNNV+VKNL+ETT+E+DLK +FG
Sbjct: 170 ALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFG 229
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD +GKSKCFGFVNF++ DDAARSVEALNGKK D KEWYVGKAQKK ER
Sbjct: 230 EFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSER 289
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELK +FEQS+KE ADK++G NLYVKNLDDSI DDKLKELF+ FGTITSCKVMRDPNGI
Sbjct: 290 EVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGI 349
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRP---- 414
SRGSGFVAFS+ EEA++AL EMNG+M+VSKPLYVALAQRKE+R ARL QFSQM+P
Sbjct: 350 SRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQPMAMA 409
Query: 415 -PVGPR-MPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFV 465
V PR MPMYPP PG+GQQ+FYGQ PP II QPGFGYQQQL+PGMR PN+FV
Sbjct: 410 SSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFV 469
Query: 466 PMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVP 525
PMVQ GQQ QR GGRR+G +QQ QQP+PLMQ +MLPRGR+YRYPPG +PD+P+ GV
Sbjct: 470 PMVQQGQQGQRSGGRRAGA--IQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVA 527
Query: 526 GGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDN 585
GGM PY++GGMP RDA QP+ GALASALANA+P+QQRT+LGENLYPLV+QLE DN
Sbjct: 528 GGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDN 587
Query: 586 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLN 645
AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR+VAQQ D++ASLSL
Sbjct: 588 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQSGNA---ADQLASLSLT 644
Query: 646 DNIVS 650
DN+ S
Sbjct: 645 DNLDS 649
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/646 (75%), Positives = 540/646 (83%), Gaps = 22/646 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQVQPQ A P G A G FV+TSLYVGDLD++V DSQLYDLF
Sbjct: 1 MAQVQVQPQN-----AMTGP-NGGAAAAAAAGGGGNFVTTSLYVGDLDMNVTDSQLYDLF 54
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL+TRRSLGYGYVNY+ +A RALD LNFTPLN +PIRIMYS+RDP
Sbjct: 55 NQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDP 114
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG GNIFIKNLDK+ID+KALHDTFS+FGNILSCKVA D GQS+GYGFVQFD EE+
Sbjct: 115 SIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEA 174
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AI+KLNGMLLNDKQV+VGPFLRKQEREST D+ +FNNV+VKNLSE+TT+D+LKK FG
Sbjct: 175 AQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFG 234
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD DGKSKCFGFVNF+ DDAAR+VEALNGKK DDKEWYVGKAQKK ER
Sbjct: 235 EFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSER 294
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK KFEQS+KE ADK++G NLYVKNLDDSI+D+KLKELFS +GTITSCKVMRDPNG+
Sbjct: 295 EHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGV 354
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
SRGSGFVAFST EEAS+AL EMNGKMV SKPLYV LAQRKE+RRARL QF+QMR
Sbjct: 355 SRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPVSMP 414
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVP 466
P V PRMPMYPP PG+GQQ+FYGQGPP IIP QPGFGYQQQLVPGMR PN+FVP
Sbjct: 415 PSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVP 474
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPG 526
MVQ Q Q G +QQ+QQP+PLM +MLPRGR+YRYPPG +PD P+ GV G
Sbjct: 475 MVQ--QGQQGQRPGGRRGGGVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPDGPMPGVAG 532
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
GM PYD+GGMP RDA+ SQ + GALAS LANASPEQQRT+LGENLYPLV+QLE DNA
Sbjct: 533 GMYSVPYDVGGMPIRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNA 592
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRNVAQQQA G
Sbjct: 593 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGG 638
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 949 bits (2452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/664 (77%), Positives = 563/664 (84%), Gaps = 34/664 (5%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQV Q G NGG +V+TSLYVGDL+ +V DS LYDLF
Sbjct: 1 MAQVQVPVQ--------------GQNVNGGANAP--YVTTSLYVGDLEANVTDSHLYDLF 44
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL+TRRSLGYGYVNY++ +A RALD LNFTPLNG PIRIMYS+RDP
Sbjct: 45 NQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARALDMLNFTPLNGSPIRIMYSHRDP 104
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG+GNIFIKNLDK ID+KALHDTFS FGNILSCKVATDS GQS+GYGFVQFDNEES
Sbjct: 105 SVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEES 164
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AI+KLNGMLLNDKQV+VGPFLRKQERES DKTRFNNVYVKNLSETTTE+DLKK FG
Sbjct: 165 AQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFG 224
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS VMRD DGK+KCFGFVNF++ DDAA +VEALNGKKFDDKEW+VGKAQKK ER
Sbjct: 225 EYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNER 284
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK +FEQS+KE ADKF+G NLY+KNLDDSI DD+LK+LFS FGTITSCKVMRDPNGI
Sbjct: 285 ENELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGI 344
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
SRGSGFVAFST EEASKAL EMNGKMVVSKPLYVALAQRKE+RRARL QFSQ+R
Sbjct: 345 SRGSGFVAFSTPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMA 404
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYG-QGPPIIPPQPGFGYQQQLVPGMR------PNYFVP 466
P V PRMPMYPP PGLGQQ+FYG P IIPPQPGFGYQQQLVPGMR PN+FVP
Sbjct: 405 PSVAPRMPMYPPGGPGLGQQIFYGQAPPAIIPPQPGFGYQQQLVPGMRPGGAPMPNFFVP 464
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPG 526
MVQ GQQ QRPGGRR+G QQ+QQP+PLMQ +M+PRGR+YRYPPG IPDVP+ GV G
Sbjct: 465 MVQQGQQGQRPGGRRAGAA--QQSQQPVPLMQQQMVPRGRVYRYPPGRGIPDVPMTGVAG 522
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
GML PYD+ GMP RDAA SQP+ GALASALANASPEQQRT+LGENLYPLV+QLE D A
Sbjct: 523 GMLSVPYDMSGMPMRDAALSQPIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAA 582
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR+V QQQA G + D++ASLSLND
Sbjct: 583 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVQQQQAGGAA--DQLASLSLND 640
Query: 647 NIVS 650
N+VS
Sbjct: 641 NLVS 644
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/665 (76%), Positives = 567/665 (85%), Gaps = 38/665 (5%)
Query: 1 MAQVQV--QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYD 58
MAQVQV QPQ+ A A P+ FV+TSLYVGDL+ SV DSQLYD
Sbjct: 1 MAQVQVPVQPQSVNAGANNPN-----------------FVTTSLYVGDLEASVTDSQLYD 43
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
LFNQ+GQVVSVRVCRDL++RRSLGYGYVNY+ +A RAL+ LNFTPLNG PIR+MYS+R
Sbjct: 44 LFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEMLNFTPLNGSPIRVMYSHR 103
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DPTIRKSGAGNIFIKNLDK+ID+KALHDTFS FGNILSCKVATD GQS+GYGFVQFD+E
Sbjct: 104 DPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSE 163
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E+A+ AI+KLNGMLLNDKQV+VGPFLRKQER++ DK RFNNV+VKNLSETTTE+DL K
Sbjct: 164 EAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKT 223
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
FGEFG ITS VMRD DGKSKCFGFVNF++ +DAA++VEALNGKK DDKEW+VGKAQKKY
Sbjct: 224 FGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVGKAQKKY 283
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE+ELK +FEQS+KE ADKF+G NLY+KNLDDSI D+KLKELFS FGTITSCKVMRDPN
Sbjct: 284 EREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPN 343
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR--- 413
GISRGSGFVAFST EEAS+AL EMNGK+VVSKPLYVALAQRKE+RRARL QFSQMR
Sbjct: 344 GISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQMRPVA 403
Query: 414 --PPVGPRMPMYPPVAPGLGQQLFYG-QGPPIIPPQPGFGYQQQLVPGMR------PNYF 464
P VGPRMPMYPP PGLGQQ+FYG P IIPPQPGFGYQQQLVPGMR PN+F
Sbjct: 404 MAPSVGPRMPMYPPAGPGLGQQIFYGQAPPAIIPPQPGFGYQQQLVPGMRPGGAPMPNFF 463
Query: 465 VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGV 524
VPMVQ GQQ QRPGGRR+G G QQ+QQP+PLMQ +MLPRGR+YRYPPG +PDVP+ GV
Sbjct: 464 VPMVQQGQQGQRPGGRRAGAG--QQSQQPVPLMQQQMLPRGRVYRYPPGRGLPDVPMTGV 521
Query: 525 PGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHD 584
GGMLP PYD+GGMP RDAA SQ + GALA+ALANA+P+QQRT+LGENLYPLV+QLE +
Sbjct: 522 AGGMLPVPYDMGGMPMRDAALSQSIPVGALATALANATPDQQRTMLGENLYPLVEQLEPE 581
Query: 585 NAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSL 644
AAKVTGMLLEMDQTEVLHLLESPEALKAKV EAMEVLR V QQQATG + D++ASLSL
Sbjct: 582 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVNEAMEVLRTV-QQQATGTA--DQLASLSL 638
Query: 645 NDNIV 649
NDN+V
Sbjct: 639 NDNLV 643
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/664 (75%), Positives = 566/664 (85%), Gaps = 20/664 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+QVQ Q+ A AA P P NG A G G ++ TSLYVGDLDL+V DSQLYD+F
Sbjct: 1 MAQIQVQHQS--AAAAAPIPGANGAAAAAGSGSV-PYMPTSLYVGDLDLNVTDSQLYDVF 57
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL+TRRSLGYGYVNY + +A RALD LNFTP N KPIRIMYS+RDP
Sbjct: 58 NQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDILNFTPFNNKPIRIMYSHRDP 117
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG GNIFIKNLDK+ID+KALHDTFS+FGNILSCKVATDS GQSRGYGFVQFDNEE+
Sbjct: 118 SIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEA 177
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGMLLNDKQV+VG FLRK ER+S ++K +FNNVYVKNLSE+TTE+DLK IFG
Sbjct: 178 AQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNK-KFNNVYVKNLSESTTEEDLKNIFG 236
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS +MRDADGKSKCFGFVNF++ D AA++VE+LNGKK DDKEWYVGKAQKK ER
Sbjct: 237 EYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSER 296
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELK +FEQS+KE DK++G+NLY+KNLDDSISD+ LKELFS+FG ITSCKVMRDP+GI
Sbjct: 297 ELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGI 356
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
SRGSGFVAFST EEAS+AL EMNGKMVVSKPLYVALAQRKEERRARL QFSQMR
Sbjct: 357 SRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMA 416
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVP 466
P VGPRMP+Y P APG+GQQ YGQGPP +IPPQ GFGYQQQLVPG+R PN+FVP
Sbjct: 417 PSVGPRMPIYSPGAPGMGQQFLYGQGPPTMIPPQGGFGYQQQLVPGIRPGGAPMPNFFVP 476
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPG 526
MVQ GQQ QR GGRR P+QQ QQP+PLM +MLPRGR+YRYPPG N+PDVP+ GV G
Sbjct: 477 MVQQGQQGQRHGGRRGAV-PVQQNQQPVPLMHQQMLPRGRVYRYPPGRNMPDVPMPGVAG 535
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
GML PYD+GGMP RDAA QP+ ALA+ALANASPE QRTLLGE+LYPLVDQLEH++A
Sbjct: 536 GMLSVPYDMGGMPIRDAAAGQPVPITALATALANASPEHQRTLLGESLYPLVDQLEHESA 595
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR+VA QQ + D++ SLSLND
Sbjct: 596 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAAQQHAN-NTADQLTSLSLND 654
Query: 647 NIVS 650
+VS
Sbjct: 655 GLVS 658
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/668 (74%), Positives = 567/668 (84%), Gaps = 29/668 (4%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANN----GGVGDARQFVSTSLYVGDLDLSVNDSQL 56
MAQ+QVQ Q+PVA A G A GG+ STSLYVGDL+ +V DSQL
Sbjct: 1 MAQIQVQHQSPVAGGNGVVAAAVGGAAAVATPGGL------TSTSLYVGDLEFNVTDSQL 54
Query: 57 YDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116
YDLFNQ+GQVVSVRVCRDLSTRRSLGYGYVNY+ ++A+RA++ LNFTP+NGK IR+MYS
Sbjct: 55 YDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEMLNFTPVNGKSIRVMYS 114
Query: 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFD 176
+RDPT+RKSG+ NIFIKNLDKSIDNKALHDTFS+FGNILSCK+ATDS GQS+GYGFVQ+D
Sbjct: 115 HRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQYD 174
Query: 177 NEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLK 236
NEESA+ AIDKLNGML+NDKQV+VG FLRKQEREST T+F NVYVKNLSE+TT+D+LK
Sbjct: 175 NEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELK 234
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
K+FGEFG ITS VMRDADGKSKCFGF+NF+ +DAA++VE+LNGKKFDDKEWYVGKAQK
Sbjct: 235 KVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQK 294
Query: 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
K ERE ELK KFEQ+ KE DK++GLNLYVKNLDD+I D+KLKELFSEFGTITSCKVMRD
Sbjct: 295 KSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRD 354
Query: 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR- 413
P+GISRGSGFVAFST+EEAS+AL+EMNGKM+VSKPLYVALAQRKEERRA+L QFSQ+R
Sbjct: 355 PSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFSQLRP 414
Query: 414 ----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PN 462
P + PRMP+YPP APG+GQQLFYGQGPP +IPPQ GFGYQQQLVPGMR PN
Sbjct: 415 VAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPN 474
Query: 463 YFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVA 522
+F+P+VQ Q + G R G GP+QQ QQP+PLMQ +MLPRGR+YRYPPG N P+ P+
Sbjct: 475 FFMPLVQ-QGQQGQRPGGRRGAGPVQQTQQPMPLMQQQMLPRGRMYRYPPGRNGPEGPMP 533
Query: 523 GVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLE 582
GVPGGML PYD+GGM RD+A QPM LASALANA PEQQRT+LGE+LYPLVDQLE
Sbjct: 534 GVPGGMLSVPYDMGGMLPRDSAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLE 593
Query: 583 HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASL 642
H++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV QQ T P+ D++ASL
Sbjct: 594 HEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV--QQTTNPA--DQLASL 649
Query: 643 SLNDNIVS 650
SLNDN+VS
Sbjct: 650 SLNDNLVS 657
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 940 bits (2430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/663 (74%), Positives = 556/663 (83%), Gaps = 25/663 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+QV AA P P NG+A G A QFV TSLYVGDLD +V DSQLYDLF
Sbjct: 1 MAQIQVHQ------AAAPVPGPNGVAAGPG---AIQFVPTSLYVGDLDFNVTDSQLYDLF 51
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDLSTRRSLGYGYVNY+ +A RALD LNFTPLN KP+RIMYS+RDP
Sbjct: 52 NQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPLRIMYSHRDP 111
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG NIFIKNLDK+ID+KALHDTFS+FGNILSCKVATD+ GQS+GYGFVQFD+EE+
Sbjct: 112 SIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEA 171
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQV+VG FLRKQER+S +FNN+YVKNL+E+TT++DLK IF
Sbjct: 172 AQNAIDKLNGMLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFE 231
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E G ITS VMRDADGKSKCFGFVNF++ DDAA++VEALNGKKFDDKEWYVGKAQKK ER
Sbjct: 232 EHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSER 291
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELKG+FEQSL E+ +K++ +NLY+KNLDDS++D+KLKELFS+FGTITSCKVM DP+GI
Sbjct: 292 ELELKGRFEQSL-ESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGI 350
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
SRGSGFVAFST EEAS+AL E+NGKMVVSKPLYVA AQRKEERRARL QFSQMR
Sbjct: 351 SRGSGFVAFSTPEEASRALAELNGKMVVSKPLYVAPAQRKEERRARLQAQFSQMRPVAMA 410
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMR------PNYFVPM 467
P V PRM MYPP APGLGQQ YGQGPP + PQ GFGYQQQLVPGMR PN+FVP+
Sbjct: 411 PSVAPRMQMYPPGAPGLGQQFLYGQGPPAMIPQAGFGYQQQLVPGMRPGGAPMPNFFVPL 470
Query: 468 VQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG 527
VQ Q + G R G GP+QQ QQP+PLMQ +MLPRGR+YRYPPG N+PDVP+ GV GG
Sbjct: 471 VQ-QGQQGQRPGGRRGGGPVQQTQQPVPLMQQQMLPRGRVYRYPPGRNMPDVPMPGVAGG 529
Query: 528 MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
ML PYD+G MP RDAA QPM ALA+ALANA+PEQQRT+LGE LYPLVDQLEHD+AA
Sbjct: 530 MLSVPYDMGVMPIRDAAGGQPMPITALATALANATPEQQRTMLGEGLYPLVDQLEHDSAA 589
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDN 647
KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR VA QQ +P D +ASLSLN+N
Sbjct: 590 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVAAQQQIN-NPADHLASLSLNEN 648
Query: 648 IVS 650
+VS
Sbjct: 649 LVS 651
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/638 (74%), Positives = 547/638 (85%), Gaps = 19/638 (2%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
N GGV + QFV TSLYVGDLD++V DSQLYDLFNQ+GQVVSVRVCRDL+++RSLGYGYV
Sbjct: 17 NAGGVNN--QFV-TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYV 73
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
NY +A RAL+ LNFTPL+GKPIRIMYS RDPTIR+SG GNIFIKNLDK+ID+KALHD
Sbjct: 74 NYGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHD 133
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
TFS FGNILSCKVA DS GQS+GYGFVQ+D+EE+A+ AI+KLNGMLLNDKQV+VGPF+RK
Sbjct: 134 TFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRK 193
Query: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
ER+ DKTRF NV+VKNLSE+T E++L+KIFGEFG ITS AVM+D DGKS+CFGFVNF
Sbjct: 194 HERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNF 253
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
++ +DAAR+VEALNG K D+K+W+VG+AQKK EREMELK +FEQS KE DK +GLNLY+
Sbjct: 254 ENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYI 313
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLDDSISD+KLKELFS +GTITSCKVMRDP+G+S+GSGFVAFS EEAS+AL+EMNGKM
Sbjct: 314 KNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKM 373
Query: 387 VVSKPLYVALAQRKEERRARL--QFSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQ- 438
VVSKPLYVALAQRKEERRARL QFSQMRP V PRMPMYPP PGLGQQ+FYGQ
Sbjct: 374 VVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQP 433
Query: 439 GPPIIPPQPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQ 492
P ++PPQ GFGYQQQLVPGMR PN+F+PMVQ GQQ QRPGGRR G P+QQ QQ
Sbjct: 434 QPAMLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQ 493
Query: 493 PIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTG 552
P+PLMQ +M PRGR YRYPPG +PDV GV GGM PYD+GGMP RDA QP+ G
Sbjct: 494 PVPLMQQQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMGGMPVRDAGIVQPIPVG 553
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
ALA+ALAN+SP +QRT+LGENLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPEALK
Sbjct: 554 ALATALANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALK 613
Query: 613 AKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
AKVAEAMEVLRNV+QQQ++ +P D++ASLSLND +VS
Sbjct: 614 AKVAEAMEVLRNVSQQQSS--NPADQLASLSLNDGLVS 649
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/665 (74%), Positives = 562/665 (84%), Gaps = 31/665 (4%)
Query: 3 QVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
QVQ QPQ ++ +PA NG AN FV+TSLYVGDLDL+V DSQLYD+FNQ
Sbjct: 4 QVQAQPQNAISGI---NPAANGGAN---------FVTTSLYVGDLDLNVTDSQLYDIFNQ 51
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+GQVVSVRVCRDL+TRRSLGYGYVNY+ +A RALD LNFTPLNGKPIR+MYS+RDP+I
Sbjct: 52 VGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSI 111
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RKSGAGNIFIKNLDK+ID+KALHDTFS FG+ILSCKVA DS GQS+GYGFVQFDNEESA
Sbjct: 112 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAL 171
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI+KLNGMLLNDKQV+VGPFLRKQER+ DK++FNNV+VKNLSETTTE+DL K F EF
Sbjct: 172 KAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEF 231
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G +TS VMRDADGKS+CFGFVNF++ DDAAR+V+ LNGK DDKEWYVGKAQKK ERE+
Sbjct: 232 GTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREV 291
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
ELK +FEQ++KE ADK++G NLY+KNLDDSI DDKLKELF+ FGTITSCKVMRDPNGISR
Sbjct: 292 ELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISR 351
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR-----PP 415
GSGFVAFST +EAS+AL EMNGKMVVSKPLYVALAQRKE+RRARL QFSQ+R
Sbjct: 352 GSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRSVPMPAS 411
Query: 416 VGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVPMV 468
V PRMP+YPP PG+GQQLFYGQ PP +IP Q GFGYQQQLVPG+R PN+FVPMV
Sbjct: 412 VAPRMPIYPPGGPGIGQQLFYGQAPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMV 471
Query: 469 QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR-GRIYRYPPGCNIPDVPVAGVPGG 527
Q GQQ QRPGGRR+G +QQ QQP+P+MQ +MLPR GR+YRYPPG +PDV + GV GG
Sbjct: 472 QQGQQGQRPGGRRAGA--VQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVAMPGVAGG 529
Query: 528 MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
M PYD+GGMP RDAA SQP+ GALASALANA+P+QQRT+LGENLYPLV+QLE DNAA
Sbjct: 530 MFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAA 589
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV--AQQQATGPSPTDRVASLSLN 645
KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV AQQQ + D++ASLSL
Sbjct: 590 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQQAGNAADQLASLSLT 649
Query: 646 DNIVS 650
+N+VS
Sbjct: 650 ENLVS 654
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/631 (75%), Positives = 542/631 (85%), Gaps = 18/631 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A QFV TSLYVGDLD +V DSQLYD+FNQ+GQVVSVRVCRDLSTRRSLGYGYVNY+ +
Sbjct: 6 AIQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQD 65
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD LNFTPLN KPIRIMYS+RDP+IRKSG NIFIKNLDK ID+KALHDTFS+FGN
Sbjct: 66 AARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGN 125
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVATD+ GQS+GYGFVQFD+EE+A++AIDKLNGML+NDKQV+VG FLRKQ+R+
Sbjct: 126 ILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGAL 185
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+FNNV+VKNL+E+TT+++LK IF E G ITS VMRDADGKSKCFGFVNF+ DDAA
Sbjct: 186 YSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAA 245
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++VEALNGKK D +EWYVGKAQKK ERE+ELKG+FEQS+KET DKF+GLNLY+KNLDDSI
Sbjct: 246 KAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSI 305
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+D+KLKELFS+FG ITSCKVMRDP+GISRGSGFVAFST EEAS+AL EMNGKM++SKPLY
Sbjct: 306 NDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISKPLY 365
Query: 394 VALAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPP 445
VALAQRKEERRARL QFSQMR P V RMPMYPP APG+GQQ YGQGPP ++PP
Sbjct: 366 VALAQRKEERRARLQAQFSQMRPVTMAPSVASRMPMYPPGAPGMGQQFLYGQGPPAMMPP 425
Query: 446 QPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP 499
Q GFGYQQQLVPGMR PN+FVP+VQ Q + G R G GP+QQ QQP+PLMQ
Sbjct: 426 QAGFGYQQQLVPGMRPGGAPMPNFFVPLVQ-QGQQGQRPGGRRGGGPVQQTQQPVPLMQQ 484
Query: 500 RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALA 559
+MLPRGR+YRYPPG N+PDVP+ GV GGML PYD+GGMP RDAA QPM ALA+ALA
Sbjct: 485 QMLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMGGMPIRDAA--QPMPITALATALA 542
Query: 560 NASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
NA+PEQQRT+LGE+LYP+VDQLEHD+AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM
Sbjct: 543 NATPEQQRTMLGESLYPIVDQLEHDSAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 602
Query: 620 EVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
EVLR VA QQ + D++ SLSLNDN+VS
Sbjct: 603 EVLRTVAAQQQIN-NQADQLGSLSLNDNLVS 632
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/664 (75%), Positives = 553/664 (83%), Gaps = 59/664 (8%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+Q A A P NG+AN + SLYVGDLD+++ DSQLYDLF
Sbjct: 1 MAQIQ-------AAVAGP----NGVAN-----------TASLYVGDLDVNITDSQLYDLF 38
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
Q GQV+SVRVCRDLSTRRSLGYGYVNY+ +A RALD LNFTPLNGKPIRIMYS+RDP
Sbjct: 39 IQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDP 98
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG NIFIKNLDKSIDNKALHDTFS FGNILSCK+ATD GQS+GYGFVQFDNEES
Sbjct: 99 SIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEES 158
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQV+VG FLRKQERE+ +KT+FNNVYVKNLSE+TTE+DLK IFG
Sbjct: 159 AQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFG 218
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFGIITS VMRD DGKSKCFGFVNF++ DDAA +VEALNGKKFD+KEWYVGKAQKKYER
Sbjct: 219 EFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYER 278
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELKG+FEQS+KE DKF+G+NLY+KNLDDSI DDKLKELFSEFGTITSCKVMRDP+GI
Sbjct: 279 ELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGI 338
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
SRGSGFVAFST+EEAS+ALTEMNGKMVVSKPLYVALAQRKEERRARL QFSQMR
Sbjct: 339 SRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMA 398
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVP 466
P V PRMPMYPP APGLGQQLFYGQGPP IIPPQ GFGYQQQLVPGMR PN+FVP
Sbjct: 399 PSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVP 458
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR-GRIYRYPPGCNIPDVPVAGVP 525
+VQ Q + G R G GP+QQ QQP+PLMQ +MLPR GR+YRYPPG N+PDVP
Sbjct: 459 LVQ-QGQQGQRPGGRRGAGPVQQNQQPVPLMQQQMLPRGGRVYRYPPGRNMPDVP----- 512
Query: 526 GGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDN 585
MP DAA QPM ALASALANA+P+QQRT+LGE+LYPLVDQLEH+
Sbjct: 513 ------------MP--DAAIGQPMPISALASALANATPDQQRTMLGESLYPLVDQLEHEM 558
Query: 586 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLN 645
AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM+VLRNVAQQQA SPT+++ASLSLN
Sbjct: 559 AAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQAN--SPTEQLASLSLN 616
Query: 646 DNIV 649
D++V
Sbjct: 617 DSLV 620
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/629 (73%), Positives = 539/629 (85%), Gaps = 20/629 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QF +TSLYVGDLD SV DSQLYDLFNQ+GQVVSVRVCRDLST RSLGYGYVNY+ +AT
Sbjct: 36 QFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDAT 95
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RA+D LNFTPLN K IR+ S RDPT RKSGAGNIFIKNLDKSID KALH+TFS+FG I+
Sbjct: 96 RAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTII 155
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCK+ATD+ GQS+GYGFVQ+D+EE+A++AIDKLNGML+NDKQV+VG FLRKQ+R+S K
Sbjct: 156 SCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSK 215
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
T+FNN+YVKNLS++T+EDDL+K FGE+G ITS VMRDADGKSKCFGFVNF++P+DAA++
Sbjct: 216 TKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKA 275
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ALNGKKFDDKEWYVGKAQKK ERE+ELK +FEQ++KE DK++G+NLYVKNLDD+I D
Sbjct: 276 VDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDD 335
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KLKELFSE+GTITSCKVMRDP+GISRGSGFVAFST EEAS+AL EMNGKM+VSKPLYVA
Sbjct: 336 EKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA 395
Query: 396 LAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQP 447
LAQRKEERRARL QFSQMR P +GPRMPMY P APG+GQQLFYGQ PP +I PQ
Sbjct: 396 LAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQA 455
Query: 448 GFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM 501
GFGYQQQLVPGMR PN+F+PMVQ Q + G R G GP QQ QQP+P+M ++
Sbjct: 456 GFGYQQQLVPGMRPGGGPMPNFFMPMVQ-QGQQGQRPGGRRGAGPAQQTQQPVPMMPQQL 514
Query: 502 LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANA 561
+PRGR+YR+PPG N+ DV + GV GGMLP PY++GGM R+AA QPM ALASALANA
Sbjct: 515 MPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANA 574
Query: 562 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
+QQRT+LGENLYPLVDQLEHD+AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+V
Sbjct: 575 PADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 634
Query: 622 LRNVAQQQATGPSPTDRVASLSLNDNIVS 650
LRNV+Q P+ D++ LSLN+N+VS
Sbjct: 635 LRNVSQ-----PNVADQLGGLSLNENLVS 658
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/638 (74%), Positives = 544/638 (85%), Gaps = 25/638 (3%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
N GGV + QFV TSLYVGDLD++V DSQLYDLFNQ+GQVVSVRVCRDL+++RSLGYGYV
Sbjct: 17 NAGGVNN--QFV-TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYV 73
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
NY +A RAL+ LNFTPL+GKPIRIMYS RDPTIR+SG GNIFIKNLDK+ID+KALHD
Sbjct: 74 NYGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHD 133
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
TFS FGNILSCKVA DS GQS+GYGFVQ+D++E+A+ AI+KLNGMLLNDKQV+VGPF+RK
Sbjct: 134 TFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRK 193
Query: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
QER+ DKTRF NV+VKNLSE+T E++L+KIFGEFG ITS AVM+D DGKS+CFGFVNF
Sbjct: 194 QERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNF 253
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
++ +DAAR+VEALNG K D+K+W+VG+AQKK EREMELK +FEQS +E DK +GLNLY+
Sbjct: 254 ENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYL 313
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLDDSISDDKLKELFS +GTITSCKVMRDP+G+S+GSGFVAFST EEAS+AL+EMNGKM
Sbjct: 314 KNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKM 373
Query: 387 VVSKPLYVALAQRKEERRARL--QFSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQG 439
VVSKPLYVALAQRKEERRARL QFSQMRP V PRMPMYPP PGLGQQ+FYGQ
Sbjct: 374 VVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQP 433
Query: 440 PP-IIPPQPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQ 492
PP ++PPQ GFGYQQQLVPGMR PN+F+PMVQ GQQ QRPGGRR G P+QQ QQ
Sbjct: 434 PPAMLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQ 493
Query: 493 PIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTG 552
P+PLMQ +M PRGR YRYPPG +PD GV GGM PYDIGG QP+ G
Sbjct: 494 PVPLMQQQMFPRGRGYRYPPGRGLPDGAFPGVGGGMFSIPYDIGG------RIVQPIPVG 547
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
ALA+ALANASP +QRT+LGENLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPEALK
Sbjct: 548 ALATALANASPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALK 607
Query: 613 AKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
AKVAEAMEVLRNV+QQQ++ +P D++ASLSLND +VS
Sbjct: 608 AKVAEAMEVLRNVSQQQSS--NPADQLASLSLNDGLVS 643
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/664 (72%), Positives = 564/664 (84%), Gaps = 26/664 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+QVQ Q+PV+ +P NG+AN + QFV+TSLYVGDL+ +VND+QLYDLF
Sbjct: 1 MAQIQVQHQSPVS-----APPPNGVAN--APNNPNQFVTTSLYVGDLEQNVNDAQLYDLF 53
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+ QVVSVRVCRDL+TRRSLGYGYVN++ +A RALD LNFTPLN +PIRIMYS+RDP
Sbjct: 54 NQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDP 113
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG NIFIKNLDK+ID+KALHDTFS+FG ILSCK+ATD+ G S+GYGFVQFD+EES
Sbjct: 114 SLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEES 173
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQV+VG FLRKQ+RE+ KT+FNNVYVKNLSE+TT+++L K FG
Sbjct: 174 AQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFG 233
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS +MRDADGKS+CFGFVNF++PDDAA++VE LNGKK DDKEWYVGKAQKK ER
Sbjct: 234 EYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSER 293
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELKG+FEQS+KE+ADK++G+NLY+KNLDD+ISD+KLKE+F+E+GTITSCKVMRDP GI
Sbjct: 294 EQELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGI 353
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
RGSGFVAFST EEAS+AL EMNGKM+ KPLYVALAQRKE+RRARL QFSQMR
Sbjct: 354 GRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPVAIT 413
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVP 466
P V PRMP+YPP APGLGQQ YGQGPP ++PPQ GFGYQQQLVPGMR P++FVP
Sbjct: 414 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVP 473
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPG 526
MVQ Q + G R GTGP+QQ QQP+P+MQ +MLPRGR+YRYPPG N+ DVP+ GV G
Sbjct: 474 MVQ-QGQQGQRPGGRRGTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQGVAG 532
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
GM+ PYD+GG+P RDA QPM ALA+ALANA PEQQRT+LGE LYPLVDQLEHD A
Sbjct: 533 GMMSVPYDMGGLPIRDAV-GQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAA 591
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
AKVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAM+VLRNVAQQQ +P D++ASLSLND
Sbjct: 592 AKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQT---NPADQLASLSLND 648
Query: 647 NIVS 650
N+VS
Sbjct: 649 NLVS 652
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/638 (75%), Positives = 538/638 (84%), Gaps = 25/638 (3%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFN 61
AQVQVQPQ P + A QFV+TSLYVGDL+L+VNDSQLYDLF+
Sbjct: 3 AQVQVQPQGPGPAPNGAAGAG-----------GNQFVTTSLYVGDLELNVNDSQLYDLFS 51
Query: 62 QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPT 121
QMG VVSVRVCRDLSTRRSLGYGYVNY+ +A RALD LNFTPLNGKPIRIMYS+RDP+
Sbjct: 52 QMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRIMYSHRDPS 111
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181
IRKSG GNIFIKNLDK ID+KALHDTFS FGNILSCKVATD+ G S+G+GFVQFD+EE+A
Sbjct: 112 IRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAA 171
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGE 241
+ AIDKLNGMLLNDKQVFVGPF+RKQEREST +K +FNNV+VKN+SE TE+DL +IFGE
Sbjct: 172 QKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGE 231
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
FG ITS VMRD DGKSKCFGFVNF++ DDAA SVEALNG+KFDDKEWYVGKAQKK ERE
Sbjct: 232 FGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSERE 291
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
+ELK +FEQ++KE DKF+G NLY+KNLDDSI DDKLKELF++FGTITSCKVMRDPNG+S
Sbjct: 292 IELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLS 351
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR-----P 414
RGSGFVAFS+ EEAS+AL EMN KMVVSKPLYVALAQRKE+RRARL QFSQMR P
Sbjct: 352 RGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPP 411
Query: 415 PVGPRMPMYPPVAPGLGQQLFYG-QGPPIIPPQPGFGYQQQLVPGMR------PNYFVPM 467
V PR+PMYPP PGLGQQ+FYG P IIPPQPGFGYQQQLVPGMR PN+FVP+
Sbjct: 412 SVVPRLPMYPPSGPGLGQQMFYGQAPPAIIPPQPGFGYQQQLVPGMRPAGPPMPNFFVPI 471
Query: 468 VQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG 527
VQ GQQ QRPGGRR+G PMQQ QQ +PLMQ +MLPRGR++RYPPG + DVP+ GV GG
Sbjct: 472 VQQGQQGQRPGGRRAGAVPMQQTQQQVPLMQQQMLPRGRVFRYPPGRGLSDVPMPGVAGG 531
Query: 528 MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
M+ PYD+GGMP DAA SQ + GALA+ALANA P +QRT+LGENLYPLV+QLE + AA
Sbjct: 532 MVSVPYDMGGMPLHDAAISQSIPVGALATALANAPPAEQRTMLGENLYPLVEQLEPEMAA 591
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625
KVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLRNV
Sbjct: 592 KVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNV 629
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/627 (70%), Positives = 526/627 (83%), Gaps = 21/627 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F Q+G VVSVRVCRD++TR+SLGY YVNYN +A R
Sbjct: 31 FPATSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAAR 90
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NG+PIRIMYS RDP++RKSG NIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 91 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 150
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD+ G+S+GYGFVQ++ +E+A +AI+KLNGML+NDK+V+VGPF+RKQER+++
Sbjct: 151 CKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNV 210
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNV+VKNLSETTTEDDL++IFG+FG ITS VMR+ DG+SKCFGFVNF+ PD+AA +V
Sbjct: 211 KFNNVFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAV 270
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGKKFDDKEWYVG+AQKK EREMELK KFE++L+ETADK++ NLY+KNLDD++ D+
Sbjct: 271 QDLNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDE 330
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+EFG ITSCKVMRD NG SRGSGFVAF +AE+AS+AL EMN KMV SKPLYVAL
Sbjct: 331 KLRELFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVAL 390
Query: 397 AQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPG 448
AQRKE+R+ARL QFSQ+R P VGPRM M+PP PG+GQQLFYGQ PP I PQPG
Sbjct: 391 AQRKEDRKARLQAQFSQLRPVPMAPTVGPRMAMFPPGVPGVGQQLFYGQPPPAFINPQPG 450
Query: 449 FGYQQQLVPGMR-----PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
FG+QQ L+PGMR PN+ +PMVQ GQQ QRP GRR+GTG MQQ+ +P+ Q +M+
Sbjct: 451 FGFQQPLMPGMRPGAPMPNFMMPMVQQGQQPQRPSGRRAGTGGMQQS---MPMGQQQMIA 507
Query: 504 R-GRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANAS 562
R GR YRYP G +PD + GV GGM P PY+IGGMP RDA SQP+ GALA+ALANA
Sbjct: 508 RGGRGYRYPTGRGMPDPAMHGVGGGM-PSPYEIGGMPMRDAGASQPVPIGALATALANAP 566
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
P+QQR +LGENLYPLVDQLEHD AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVL
Sbjct: 567 PDQQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVL 626
Query: 623 RNVAQQQATGPSPTDRVASLSLNDNIV 649
R+ Q T PSP ++ASLSLND+ V
Sbjct: 627 RSA---QHTNPSPEQQLASLSLNDHGV 650
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/663 (70%), Positives = 546/663 (82%), Gaps = 32/663 (4%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+QVQ Q P V P+P +NG+ N A QFV+TSLYVGDL+++VNDSQLYDLF
Sbjct: 1 MAQIQVQHQTPAPV---PAP-SNGVVPNV----ANQFVTTSLYVGDLEVNVNDSQLYDLF 52
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL+TRRSLGYGYVN+ +A RALD LNFTP+N K IR+MYS+RDP
Sbjct: 53 NQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDP 112
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+ RKSG NIFIKNLDK+ID+KALHDTFS+FG I+SCK+ATD GQS+GYGFVQF+ E+S
Sbjct: 113 SSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDS 172
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQVFVG FLRKQ+R++ KT+FNNVYVKNLSE+ TEDDLK FG
Sbjct: 173 AQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFG 232
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+G ITS +MRDADG+SKCFGFVNF++ +DAA++VEALNGKK DDKEWYVGKAQKK ER
Sbjct: 233 AYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSER 292
Query: 301 EMELKGKFEQSLKET-ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
E ELKG+FEQ++KE+ DKF+GLNLY+KNLDDSI+D+KLKE+FSEFGTITS K+MRDPNG
Sbjct: 293 EQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNG 352
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR---- 413
+SRGSGFVAFST EEAS+AL EMNGKM+VSKPLYVA+AQRKE+RRARL QFSQMR
Sbjct: 353 VSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAI 412
Query: 414 -PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFV 465
P V PRMP+YPP PGLGQQ YGQGPP ++PPQ GFGYQQQLVPGMR P+YFV
Sbjct: 413 TPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFV 472
Query: 466 PMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPG-CNIPDVPVAGV 524
PMVQ Q Q GP QQ Q +P+MQ +MLPR R+YRYPPG NI D PV +
Sbjct: 473 PMVQ--QGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQDAPVQNI 530
Query: 525 PGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHD 584
GGM+ YD+GG+P RD PM ALA+ALANA PEQQRT+LGE LYPLVDQLEHD
Sbjct: 531 GGGMM--SYDMGGLPLRDVV--PPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHD 586
Query: 585 NAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSL 644
+AAKVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAMEVLRNV+QQQ G SP D++ASLSL
Sbjct: 587 SAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQ--GNSPADQLASLSL 644
Query: 645 NDN 647
ND+
Sbjct: 645 NDS 647
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/631 (70%), Positives = 526/631 (83%), Gaps = 23/631 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVN+++ +A R
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP+ RKSGA NIFIKNLDKSIDNKAL+DTFS FGNILS
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILS 155
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVAT+ G+S+GYGFVQF+ EE+A++AI KLNGMLLNDK+V+VGPF+RKQERE+ +
Sbjct: 156 CKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNP 215
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNLSE+TTED+LK+IFG+FG ITS VMR+ DGKS+CFGFVNF++PDDAAR+V
Sbjct: 216 KFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAV 275
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGKKFDDKEWYV +AQKK EREMELK KFE+++KE ADK +G NLY+KNLDDSI DD
Sbjct: 276 EDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 337 -KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KLKE+F++FGTITSCKVMRD NG+S+GSGFVAF +AE+AS+AL MNGKM+ SKPLYVA
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
Query: 396 LAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQP 447
LAQRKEERRARL QFSQMR P V PRMPMYPP PG+GQQLFYGQ PP + PQP
Sbjct: 396 LAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVNPQP 455
Query: 448 GFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM 501
GFG+QQ L+PGMR PN+ +PMVQ GQQ QRP GRR+GTG + QQP+P+ +M
Sbjct: 456 GFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGI---QQPMPMGHQQM 512
Query: 502 LPRGRI--YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALA 559
LPRG YRY G +PD GV GG++P PY++G MP DA + GALASALA
Sbjct: 513 LPRGSRGGYRYASGRGMPDNAFRGV-GGLVPSPYEMGRMPLSDAGAPPQVPIGALASALA 571
Query: 560 NASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
N+ P+QQR +LGE+LYPLVDQLEHD AAKVTGMLLEMDQTEVLHL+ESP+ALKAKVAEAM
Sbjct: 572 NSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKVAEAM 631
Query: 620 EVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
EVLRN QQQA +PTD++A+L+L+D +VS
Sbjct: 632 EVLRNAQQQQAN--TPTDQLAALTLSDGVVS 660
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/625 (70%), Positives = 517/625 (82%), Gaps = 20/625 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL+ SV DSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVN+N +A RAL+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF PLNGKPIR+MYS RDP+ R+SG+ NIFIKNLDK+ID+K LHDTFS FGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD +GQS+G+GFVQ+D E+A+SAI LNGML+NDK V+VGPFLRKQERE++ DKT+FNN
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNLSE+TT++DL KIFG +G ITS +M DGKS+CFGF+NF PDDAAR+VE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GKK +DKEWYVG+AQKK ERE+ELK +FEQS+K+ ADK++GLNLY+KNLDDSI DD+L E
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LFS +G ITSCK+MRD NG+S+GSGFVAFST EEAS+ALTEMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 399
Query: 401 EERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQ 452
E+R+A L QFSQ+R P + PR+PMYPP+AP LGQQLFYGQ PP I+PPQPGFG+Q
Sbjct: 400 EDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAP-LGQQLFYGQAPPAIMPPQPGFGFQ 458
Query: 453 QQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
QQLVPGMR PNYFVP+VQ GQQ RPG RRSG G Q QQ Q +MLPRGR
Sbjct: 459 QQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGS-AQGQQSAQPFQQQMLPRGR 517
Query: 507 IYRYPPGCNIPDV-PVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQ 565
+YRYPP N+PDV P+ GV GGM+ YD+GG P RDA S P G L SALANA+PEQ
Sbjct: 518 VYRYPPAHNMPDVPPMPGVAGGMIQS-YDMGGFPVRDAGLS-PAPIGTLTSALANANPEQ 575
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625
QRT+LGE+LYPLV+ LE ++AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM+VLRNV
Sbjct: 576 QRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNV 635
Query: 626 AQQQATGPSPTDRVASLSLNDNIVS 650
AQQ +PT ++A+LSL D I+S
Sbjct: 636 AQQHNAN-TPTSQLAALSLGDAIIS 659
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/625 (69%), Positives = 516/625 (82%), Gaps = 20/625 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL+ SV DSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVN+N +A RAL+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF PLNGKPIR+MYS RDP+ R+SG+ NIFIKNLDK+ID+K LHDTFS FGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD +GQS+G+GFVQ+D E+A+SAI LNGML+NDK V+VGPFLRKQERE++ DKT+FNN
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNLSE+TT++DL KIFG +G ITS +M DGKS+CFGF+NF PDDAAR+VE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GKK +DKEWYVG+AQKK ERE+ELK +FEQS+K+ ADK++GLNLY+KNLDDSI DD+L E
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LFS +G ITSCK+MRD NG+S+GSGFVAFST EEAS+ALTEMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 399
Query: 401 EERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQ 452
E+R+ L QFSQ+R P + PR+PMYPP+AP LGQQLFYGQ PP I+PPQPGFG+Q
Sbjct: 400 EDRKVMLQAQFSQVRPVPMTPSMAPRLPMYPPMAP-LGQQLFYGQAPPAIMPPQPGFGFQ 458
Query: 453 QQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
QQLVPGMR PNYFVP+VQ GQQ RPG RRSG G Q QQ Q +MLPRGR
Sbjct: 459 QQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGS-AQGQQSAQPFQQQMLPRGR 517
Query: 507 IYRYPPGCNIPDV-PVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQ 565
+YRYPP N+PDV P+ GV GGM+ YD+GG P RDA S P G L SALANA+PEQ
Sbjct: 518 VYRYPPAHNMPDVPPMPGVAGGMIQS-YDMGGFPVRDAGLS-PAPIGTLTSALANANPEQ 575
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625
QRT+LGE+LYPLV+ LE ++AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM+VLRNV
Sbjct: 576 QRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNV 635
Query: 626 AQQQATGPSPTDRVASLSLNDNIVS 650
AQQ +PT ++A+LSL D I+S
Sbjct: 636 AQQHNAN-TPTSQLAALSLGDAIIS 659
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/667 (67%), Positives = 531/667 (79%), Gaps = 31/667 (4%)
Query: 1 MAQVQV----QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQL 56
MAQVQ P V + + AT GI GV SLYVGDLD +V DSQL
Sbjct: 1 MAQVQAPSSHSPPPVVNDGSVTASATLGIGGGDGVNHG---ALCSLYVGDLDFNVTDSQL 57
Query: 57 YDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116
YD F ++ QVVSVRVCRD +T SLGYGYVNY+ +A +A+ +LN++ LNGK IRI YS
Sbjct: 58 YDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKLNYSTLNGKMIRITYS 117
Query: 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFD 176
RD + R+SG GN+F+KNLDKS+DNK LH+TFS G I+SCKVA D +GQSRGYGFVQFD
Sbjct: 118 SRDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHMGQSRGYGFVQFD 177
Query: 177 NEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLK 236
E+SAK+AI+KLNG +LNDKQ+FVGPFLRK+ERES ADK +F NVYVKNLSE TT+D+LK
Sbjct: 178 TEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEVTTDDELK 237
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
FG++G I+S VMRD DGKS+CFGFVNF++P+DAAR+VEALNGKKFDDKEWYVGKAQK
Sbjct: 238 TTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQK 297
Query: 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
K ERE+EL ++EQ + +KF+GLNLYVKNLDD+++D+KL+ELF+EFGTITSCKVMRD
Sbjct: 298 KSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD 357
Query: 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRP 414
P+G S+GSGFVAFS A EAS+ L EMNGKMV KPLYVALAQRKEERRA+L QFSQMRP
Sbjct: 358 PSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRP 417
Query: 415 P----VGPRMPMYPPVAPGLGQQLFYGQG-PPIIPPQPGFGYQQQLVPGMRPNYFVPMVQ 469
VGPRMP++P APGLGQQ+FYGQG PPIIP QPGFGYQ QLVPG+RP++F PM+Q
Sbjct: 418 AFIPGVGPRMPIFPGGAPGLGQQIFYGQGSPPIIPHQPGFGYQPQLVPGLRPSFF-PMMQ 476
Query: 470 PGQQNQRPGGRRSGTGPM-QQAQQPIPLMQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGG 527
PGQQ RPGGRRSG GPM Q QQP+P MQP+M+PRGR YRYPPG N+PD P+ GG
Sbjct: 477 PGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPPGGRNMPDGPML---GG 533
Query: 528 MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
M+P YD+ GMP +QPM G LA++LANA+P QQRTLLGE+LYPLVDQ+EH+NAA
Sbjct: 534 MVPVAYDMNGMP-----IAQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIEHENAA 588
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ---QQATG---PSPTDRVAS 641
KVTGMLLEMDQTEVLHLLESPEAL AKV+EA++VLRNV Q Q + G SP+D +AS
Sbjct: 589 KVTGMLLEMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPSTQVSEGNKSGSPSDLMAS 648
Query: 642 LSLNDNI 648
LS+ND+
Sbjct: 649 LSINDHF 655
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/628 (70%), Positives = 523/628 (83%), Gaps = 17/628 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F Q+G VVSVRVCRD++TRRSLGY YVNY++ +A R
Sbjct: 37 FPATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAAR 96
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP++RKSG NIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 97 ALEMLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 156
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD+ G+S+GYGFVQ++ +E+A++AIDKLNGML+NDK+V+VGPF+RKQER+++ +
Sbjct: 157 CKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQV 216
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNLSE TTEDDLK+IFG+FG ITS VMR+ DG+SKCFGFVNF+ PDDAA++V
Sbjct: 217 KFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGKKFDDKEWYVG+AQKK EREMELK KFE++L+E ADK++ NLY+KNLDDS+ DD
Sbjct: 277 QELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDD 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+E+GTITSCKVMRD NG+SRGSGFVAF +AE+AS+AL EMN KMV SKPLYVAL
Sbjct: 337 KLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVAL 396
Query: 397 AQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPG 448
AQRKE+R+ARL QFSQ+R P VGPRMPM+PP PG+GQQLFYGQ PP I QPG
Sbjct: 397 AQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINTQPG 456
Query: 449 FGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML 502
FG+QQ L+PGMR PN+ +PMVQ GQQ QRP GRR+G Q Q M
Sbjct: 457 FGFQQPLMPGMRPGAGPMPNFIMPMVQQGQQPQRPAGRRAGA--GGMQQPMPMGQQQMMA 514
Query: 503 PRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANAS 562
GR YRYP G +PD + GV GG++P PY++GGMP RDAA SQP+ GALA+ALANA+
Sbjct: 515 RGGRGYRYPTGRGMPDPAMHGVGGGVMPSPYEMGGMPMRDAAASQPVPIGALATALANAA 574
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
P+QQR +LGENLYPLVDQLEH+ AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL
Sbjct: 575 PDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 634
Query: 623 RNVAQQQATGPSPTDRVASLSLNDNIVS 650
R AQQ T +P ++ASLSLND +VS
Sbjct: 635 R-TAQQIQTNATPEQQLASLSLNDGVVS 661
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/648 (68%), Positives = 514/648 (79%), Gaps = 29/648 (4%)
Query: 14 VAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
+A P TN A +G + SLYVGDLD VND QLYDLFNQ+ QVVSVR+CR
Sbjct: 1 MAHIPQTPTNDAAASGA---NPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICR 57
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D++T++SLGYGYVN++ A +A +A+D LNFTPLNGK IRIMYS RDP+ RKSGA N+FIK
Sbjct: 58 DVATQQSLGYGYVNFSNARDAAKAIDVLNFTPLNGKTIRIMYSIRDPSARKSGAANVFIK 117
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLDK+ID+KAL DTFS FGNILSCK+ATD+ GQS+G+GFVQF++EESA++AIDKLNGML+
Sbjct: 118 NLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLI 177
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
NDKQV+VGPF RKQ+RES T+FNNVYVKNL E TTE DLK IFGE+G ITS VMRD
Sbjct: 178 NDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRD 237
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
DGKSK FGFVNF + +DAA++VEALNGK FD KEWYVGKAQKK ERE+ELK + EQS K
Sbjct: 238 VDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTK 297
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373
ET DK+ G NLY+KNLDDS+ D++L+ELFSEFGTITSCKVMRDP+GISRGSGFVAFS AE
Sbjct: 298 ETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAE 357
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPP-----VGPRMPMYPPV 426
AS AL EMNGKMV KPLYVALAQRKE+RRARL QFSQ RP V PRMP+YP
Sbjct: 358 GASWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQARPVAITPNVSPRMPLYPLG 417
Query: 427 APGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMR----PNYFVPMVQPGQQNQRPGGRRS 482
APG+GQQL YGQ P + PQ FGYQQ VPGMR PN++VP+VQ Q + G +
Sbjct: 418 APGIGQQLLYGQAAPSMIPQAAFGYQQHFVPGMRPGGAPNFYVPLVQ-QGQQGQRSGGQR 476
Query: 483 GTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRD 542
G GPMQQ QQP+PLM +MLPRG +YRYPPG N+ ++ +AGVPGGM+ Y IG
Sbjct: 477 GAGPMQQLQQPLPLMHQQMLPRGHVYRYPPGSNMQNIQLAGVPGGMV--SYGIG------ 528
Query: 543 AAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVL 602
QPM T ALASALANA+PEQQRT+LGE LYPLVD+LEH+ AAKVTGMLLEMDQ EVL
Sbjct: 529 ----QPMPTQALASALANATPEQQRTMLGEALYPLVDKLEHETAAKVTGMLLEMDQPEVL 584
Query: 603 HLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
HL+ESP+ALKAKV EAM+VLR V QQQ+ SP D++ASLSLNDN+ S
Sbjct: 585 HLIESPDALKAKVVEAMDVLRKVTQQQSN--SPADQLASLSLNDNVES 630
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/625 (69%), Positives = 510/625 (81%), Gaps = 26/625 (4%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VND QLYDLFNQ+ QVVSVR+CRD++T++SLGYGYVN++ AH+A +
Sbjct: 21 LTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAK 80
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A+D LNFTPLNGK IRIMYS RDP+ RKSGA N+FIKNLDK+ID+KAL+DTFS FGNILS
Sbjct: 81 AIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILS 140
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD+ GQS+G+GFVQF++EESA++AIDKLNGML+NDKQVFVGPFLRKQ+RES T
Sbjct: 141 CKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGT 200
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNV+VKNL ++ TE DL++IFGE+G ITS VMRD DGKSK FGFVNF + DDAA++V
Sbjct: 201 KFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAV 260
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALNGK FD KEWYVGKAQKK ERE+ELKG+ EQ KET DK+ G NLY+KNLDDS+ D+
Sbjct: 261 EALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDE 320
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L ELFSEFGTITSCKVMRDPNGISRGSGFV+FS AE A++AL EMNGKMV KPLYVAL
Sbjct: 321 ELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVAL 380
Query: 397 AQRKEERRARL--QFSQMRPP-----VGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF 449
AQRKE+RRARL QFSQ RP V PRMP+YP AP +GQQ YGQ P PQ F
Sbjct: 381 AQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLYPLGAPAIGQQFLYGQAAPATIPQAAF 440
Query: 450 GYQQQLVPGMR----PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRG 505
GYQQ VPGMR PN++VP+VQ GQQ QRPGG R G+GPMQQ QQP+PLM +MLPRG
Sbjct: 441 GYQQHFVPGMRPGGAPNFYVPLVQQGQQGQRPGGHR-GSGPMQQLQQPLPLMHQQMLPRG 499
Query: 506 RIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQ 565
+YRYP G N+ ++ +AGVPGGM+ Y IG Q M T ALASALANA+PEQ
Sbjct: 500 HVYRYPSGSNMQNIQLAGVPGGMV--TYGIG----------QQMPTQALASALANATPEQ 547
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625
QRT+LGE LYPLVD+LEH+ AAKVTGMLLEMDQ EVLHL+ESP+ALKAKV EAM+VL+ V
Sbjct: 548 QRTMLGEALYPLVDKLEHEAAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLKKV 607
Query: 626 AQQQATGPSPTDRVASLSLNDNIVS 650
QQQ+ SP D++ASLSLNDN+ S
Sbjct: 608 TQQQSN--SPADQLASLSLNDNVES 630
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 161/294 (54%), Gaps = 17/294 (5%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ + ++++ +LD +++ LYD F+ G ++S +V D S +S G+G+V + +
Sbjct: 106 ARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASG-QSKGHGFVQFESEES 164
Query: 94 ATRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
A A+D+LN +N K + + R+ + + N+F+KNL S+ L F
Sbjct: 165 AQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFG 224
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
+G I S V D G+S+G+GFV F N + A A++ LNG + K+ +VG +K ER
Sbjct: 225 EYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSER 284
Query: 210 E------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
E T DK N+Y+KNL ++ +++L ++F EFG ITS VMRD +G
Sbjct: 285 ELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGI 344
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
S+ GFV+F + A R++ +NGK K YV AQ+K +R L+ +F QS
Sbjct: 345 SRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQS 398
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/625 (69%), Positives = 513/625 (82%), Gaps = 24/625 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDLD +V DSQLYD F ++ QVVSVRVCRD +T SLGYGYVNY+ +A +A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LN++ LNGK IRI YS RD + R+SG GN+F+KNLDKS+DNK LH+ FS G I+SCKV
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATD +GQSRGYGFVQFD E+SAK+AI+KLNG +LNDKQ+FVGPFLRK+ERES ADK +F
Sbjct: 166 ATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFT 225
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNLSE TT+D+LK FG++G I+S VMRD DGKS+CFGFVNF++P+DAAR+VEAL
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGKKFDDKEWYVGKAQKK ERE+EL ++EQ + +KF+GLNLYVKNLDD+++D+KL+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
ELF+EFGTITSCKVMRDP+G S+GSGFVAFS A EAS+ L EMNGKMV KPLYVALAQR
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 400 KEERRARL--QFSQMRPP----VGPRMPMYPPVAPGLGQQLFYGQG-PPIIPPQPGFGYQ 452
KEERRA+L QFSQMRP VGPRMP++ APGLGQQ+FYGQG PPIIP QPGFGYQ
Sbjct: 406 KEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQ 465
Query: 453 QQLVPGMRPNYF-VPMVQPGQQNQRPGGRRSGTGPM-QQAQQPIPLMQPRMLPRGRIYRY 510
QLVPGMRP +F PM+QPGQQ RPGGRRSG GPM Q QQP+P MQP+M+PRGR YRY
Sbjct: 466 PQLVPGMRPAFFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRY 525
Query: 511 PPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTL 569
P G N+PD P +PGGM+P YD+ MP +SQPM G LA++LANA+P QQRTL
Sbjct: 526 PSGGRNMPDGP---MPGGMVPVAYDMNVMP-----YSQPMSAGQLATSLANATPAQQRTL 577
Query: 570 LGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
LGE+LYPLVDQ+E ++AAKVTGMLLEMDQTEVLHLLESPEAL AKV+EA++VLRNV Q
Sbjct: 578 LGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPS 637
Query: 630 ATGP------SPTDRVASLSLNDNI 648
+ G SP+D +ASLS+ND++
Sbjct: 638 SQGSDGNKSGSPSDLLASLSINDHL 662
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/625 (69%), Positives = 513/625 (82%), Gaps = 24/625 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDLD +V DSQLYD F ++ QVVSVRVCRD +T SLGYGYVNY+ +A +A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LN++ LNGK IRI YS RD + R+SG GN+F+KNLDKS+DNK LH+ FS G I+SCKV
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATD +GQSRGYGFVQFD E+SAK+AI+KLNG +LNDKQ+FVGPFLRK+ERES ADK +F
Sbjct: 166 ATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFT 225
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNLSE TT+D+LK FG++G I+S VMRD DGKS+CFGFVNF++P+DAAR+VEAL
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGKKFDDKEWYVGKAQKK ERE+EL ++EQ + +KF+GLNLYVKNLDD+++D+KL+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
ELF+EFGTITSCKVMRDP+G S+GSGFVAFS A EAS+ L EMNGKMV KPLYVALAQR
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 400 KEERRARL--QFSQMRPP----VGPRMPMYPPVAPGLGQQLFYGQG-PPIIPPQPGFGYQ 452
KEERRA+L QFSQMRP VGPRMP++ APGLGQQ+FYGQG PPIIP QPGFGYQ
Sbjct: 406 KEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQ 465
Query: 453 QQLVPGMRPNYF-VPMVQPGQQNQRPGGRRSGTGPM-QQAQQPIPLMQPRMLPRGRIYRY 510
QLVPGMRP +F PM+QPGQQ RPGGRRSG GPM Q QQP+P MQP+M+PRGR YRY
Sbjct: 466 PQLVPGMRPAFFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRY 525
Query: 511 PPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTL 569
P G N+PD P +PGGM+P YD+ MP +SQPM G LA++LANA+P QQRTL
Sbjct: 526 PSGGRNMPDGP---MPGGMVPVAYDMNVMP-----YSQPMSAGQLATSLANATPAQQRTL 577
Query: 570 LGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
LGE+LYPLVDQ+E ++AAKVTGMLLEMDQTEVLHLLESPEAL AKV+EA++VLRNV Q
Sbjct: 578 LGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPS 637
Query: 630 ATGP------SPTDRVASLSLNDNI 648
+ G SP+D +ASLS+ND++
Sbjct: 638 SQGSEGNKSGSPSDLLASLSINDHL 662
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/652 (72%), Positives = 539/652 (82%), Gaps = 26/652 (3%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
A V V AQP NG ANN FV+TSLYVGDL+ +V DSQLYDLFNQ+GQVVSV
Sbjct: 2 AQVQVPAQPQ-NVNGGANN------PNFVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSV 54
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRDL++RRSLGYGYVNY+ +A RAL+ LNFTP+NG PIR+MYS+RDP++RKSGAGN
Sbjct: 55 RVCRDLTSRRSLGYGYVNYSNPQDAARALEVLNFTPVNGSPIRVMYSHRDPSVRKSGAGN 114
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLDK+ID+KALHDTFS FGNILSCKVATD GQS+GYGFVQFD+EE+A+ AI+KLN
Sbjct: 115 IFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLN 174
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GMLLNDKQV+VGPFLRKQER++ DKTRFNNV+VKNLSETT E+DL K FGEFG ITS
Sbjct: 175 GMLLNDKQVYVGPFLRKQERDTATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVV 234
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VMRD DGKS+CFGFVNF++ DDAA++ EALNGKKFDDKEW+VGKAQKKYERE+ELK +FE
Sbjct: 235 VMRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFE 294
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
QS+KE ADKF+G NLY+KNLDDSI D+K+KELFS FGTITSCKVMRDPNGISRGSGFVAF
Sbjct: 295 QSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAF 354
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQF-------SQMRPPVGPRMPM 422
ST EEAS+AL EMNGKMV SKPLYVALAQRKE+RRARL F ++ V P+
Sbjct: 355 STPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLSFLKCDQLQWHLQLVVCQCTPL 414
Query: 423 YPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQR 476
PV + P PGFGYQQQLVPGMR PN+FVPMVQ GQQ QR
Sbjct: 415 LVPVLDN-KYSMDKAHLLSCHPRLPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQR 473
Query: 477 PGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIG 536
PGGRR+GTG QQ+QQP+ LMQ +MLPRGR+YRYPPG +PDVP+ GV GGML PYD+G
Sbjct: 474 PGGRRAGTG--QQSQQPVQLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLSVPYDMG 531
Query: 537 GMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEM 596
GMP RDAA SQP+ GALA+ALANA+P+QQRT+LGENLYPLV+QLE + AAKVTGMLLEM
Sbjct: 532 GMPMRDAALSQPIPIGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEM 591
Query: 597 DQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNI 648
DQTEVLHLLESPEALK+KV EAMEVLR V QQQATG + D++ASLSLNDN+
Sbjct: 592 DQTEVLHLLESPEALKSKVNEAMEVLRTV-QQQATGTA--DQLASLSLNDNL 640
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/625 (69%), Positives = 511/625 (81%), Gaps = 22/625 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL+ SV DSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVN+N +A RAL+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF PLNGKPIR+MYS RDP+ R+SG+ NIFIKNLDK+ID+K LHDTFS FGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD +GQS+G+GFVQ+D E+A+SAI LNGML+NDK V+VGPFLRKQERE++ DKT+FNN
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNLSE+TT++DL KIFG +G ITS +M DGKS+CFGF+NF PDDAAR+VE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GKK +DKEWYVG+AQKK ERE+ELK +FEQS+K+ ADK++GLNLY+KNLDDSI DD+L E
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LFS +G ITSCK+MRD NG+S+GSGFVAFST LTEMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTLPFIQ--LTEMNGKMISGKPLYVAFAQRK 397
Query: 401 EERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQ 452
E+R+A L QFSQ+R P + PR+PMYPP+AP LGQQLFYGQ PP I+PPQPGFG+Q
Sbjct: 398 EDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAP-LGQQLFYGQAPPAIMPPQPGFGFQ 456
Query: 453 QQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
QQLVPGMR PNYFVP+VQ GQQ RPG RRSG G Q QQ Q +MLPRGR
Sbjct: 457 QQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGS-AQGQQSAQPFQQQMLPRGR 515
Query: 507 IYRYPPGCNIPDV-PVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQ 565
+YRYPP N+PDV P+ GV GGM+ YD+GG P RDA S P G L SALANA+PEQ
Sbjct: 516 VYRYPPAHNMPDVPPMPGVAGGMIQS-YDMGGFPVRDAGLS-PAPIGTLTSALANANPEQ 573
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625
QRT+LGE+LYPLV+ LE ++AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM+VLRNV
Sbjct: 574 QRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNV 633
Query: 626 AQQQATGPSPTDRVASLSLNDNIVS 650
AQQ +PT ++A+LSL D I+S
Sbjct: 634 AQQHNAN-TPTSQLAALSLGDAIIS 657
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/627 (68%), Positives = 509/627 (81%), Gaps = 18/627 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F Q+G VVSVRVCRD+++R+SLGY YVNYN +A R
Sbjct: 122 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 181
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NG+PIRIMYS RDP++RKSG NIFIKNLDKSIDNKALHDTF FGNILS
Sbjct: 182 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILS 241
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+GYGFVQ++ +E+A +AI+KLNGML+NDK+V+VGPF+RKQER+++
Sbjct: 242 CKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSV 301
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNL+ETTTEDDLK+IFG+FG ITS VMRD DG+SKCFGFVNF+ PD+AA +V
Sbjct: 302 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 361
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGKKF DKEWYVG+AQKK EREMELK KFE++L+E ADK++ NLY+KNLDD++ D+
Sbjct: 362 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDE 421
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+EFGTITSCKVMRD NG SRGSGFVAF +A++AS+AL EMN KMV +KPLYVAL
Sbjct: 422 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVAL 481
Query: 397 AQRKEERRARL--QFSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF 449
AQRKE+R+ARL QFSQMRP VGPRM M PP P +GQQ+FYGQ P I PQPGF
Sbjct: 482 AQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQPPAFINPQPGF 540
Query: 450 GYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
G+QQ +PGMR PN+ +PMVQ GQQ QRP GRR+G G Q + Q
Sbjct: 541 GFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGRRAGAG-GMQQSMQMGQQQMMGRG 599
Query: 504 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASP 563
GR YRYP G +PD + GV GG++ PY++GGMP RDA SQP+ GALASALAN+ P
Sbjct: 600 GGRGYRYPTGRGMPDPAMHGV-GGVMTSPYEMGGMPMRDAGASQPVPIGALASALANSPP 658
Query: 564 EQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E QR +LGENLYPLVDQLEHD AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEV R
Sbjct: 659 ETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVFR 718
Query: 624 NVAQQQATGPSPTDRVASLSLNDNIVS 650
+ QQ T SP ++ASLSLND ++S
Sbjct: 719 SA--QQHTNQSPEQQLASLSLNDGLIS 743
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/628 (68%), Positives = 515/628 (82%), Gaps = 24/628 (3%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVGDL+ SV+DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVN++ +A RAL
Sbjct: 45 TTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARAL 104
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LNF LN KPIR+MYS RDP+ R+SG+ NIFIKNLDK+IDNK LH+TFS+FG ILSCK
Sbjct: 105 EVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCK 164
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D GQS+G+GFVQ++ EE+A++AI LNGML+NDK VFVGPFLRKQER+ + DKT+F
Sbjct: 165 VAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKF 224
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNV+VKNLSE+TT++DL K+FGE+G ITS VM DGKS+CFGF+NF++PD A+R+V+
Sbjct: 225 NNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQE 284
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNGKK +DKEWYVG+AQKK EREMELK +FEQSLK+ ADK++GLNLY+KNLDDSI DD+L
Sbjct: 285 LNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQL 344
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ELFS FG ITS KVMRD NG+S+GSGFVAFST EEAS+ALTEMNGKM+ KPLYVA AQ
Sbjct: 345 RELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ 404
Query: 399 RKEERRARL--QFSQMRPPV------GPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGF 449
RKE+R+A L QFSQMRP V PR+PMYPP+AP QQLFYGQ PP +IPPQPGF
Sbjct: 405 RKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMAP---QQLFYGQAPPAMIPPQPGF 461
Query: 450 GYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
G+QQQLVPGMR PNYFVP+VQ GQQ RPG RR G G Q P Q +++P
Sbjct: 462 GFQQQLVPGMRPGGPHMPNYFVPVVQQGQQGPRPGMRR-GAGAQGQQPVPP--FQQQIVP 518
Query: 504 RGRIYRYPPGCNIPDVP-VAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANAS 562
RGR+YRYP G N+P+ P + GV GGM+ YD+GG P RDAA S Q G L SALANA+
Sbjct: 519 RGRMYRYPTGRNMPEAPAMPGVAGGMIQA-YDMGGFPVRDAAVSPAAQIGTLTSALANAN 577
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
PEQQRT+LGENLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESP+ALK+KVAEAM+VL
Sbjct: 578 PEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLHLLESPDALKSKVAEAMDVL 637
Query: 623 RNVAQQQATGPSPTDRVASLSLNDNIVS 650
RNVA QQ +PT+++A+LSL + I+S
Sbjct: 638 RNVAHQQNPN-TPTNQLAALSLTEGIIS 664
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/637 (68%), Positives = 520/637 (81%), Gaps = 20/637 (3%)
Query: 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA 90
VG A+ +TSLYVGDL+ SV DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVN++
Sbjct: 28 VGVAQPLPTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSN 87
Query: 91 AHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
+A RAL+ LNF PLN KPIR+MYS RDP+ R+SG+ NIFIKNLDK+IDNK LHDTFS
Sbjct: 88 PMDAARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSA 147
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG ILSCKVATD +GQS+G+GFVQ++ EE A+SA+ LNGML+NDK V+VGPFLRKQER+
Sbjct: 148 FGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERD 207
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
++ DK RFNNV+VKNLSE+TT++DL KIF E+G ITS VM DGKS+CFGF+NF+ PD
Sbjct: 208 NSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPD 267
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DA R+VE LNGKK +DKEWY G+AQKK EREM+LK +FEQS+K+ ADK++G NLY+KNLD
Sbjct: 268 DAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLD 327
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D ISDD+L+ELFS FG ITSCKVMRD NG+S+GSGFVAFST EEAS+A+TEMNGKM+ K
Sbjct: 328 DGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGK 387
Query: 391 PLYVALAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQG-PPI 442
PLYVA AQRKEER+A L QFSQMR P + PR+PMYPP+AP LGQQLFYGQ PP+
Sbjct: 388 PLYVAFAQRKEERKAMLQAQFSQMRPVPITPSMTPRLPMYPPMAP-LGQQLFYGQAPPPM 446
Query: 443 IPPQPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL 496
+PPQPGFG+QQQLVPGMR PNYFVP+VQ GQQ RPG RRSG G +Q Q
Sbjct: 447 MPPQPGFGFQQQLVPGMRPSGAHMPNYFVPVVQQGQQGPRPGMRRSGAGSVQGQQS-AQS 505
Query: 497 MQPRMLPRGRIYRYP--PGCNIPDV-PVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA 553
Q +M+PRGR+YRYP PG N+P+V P+AGV G + PYD+GG P RDA S G
Sbjct: 506 YQQQMVPRGRVYRYPPGPGRNMPEVQPMAGVGAGGMIQPYDMGGFPVRDAGLSPAAPIGT 565
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
L SALANA+P+QQRTLLGE+LYPLV+ LEH+ AAKVTGMLLEMDQTEVLHLLESPEALK+
Sbjct: 566 LTSALANATPDQQRTLLGESLYPLVELLEHNQAAKVTGMLLEMDQTEVLHLLESPEALKS 625
Query: 614 KVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
KVAEAM+VLRNVAQQQ +PT ++A LS+ D+I+S
Sbjct: 626 KVAEAMDVLRNVAQQQNPN-APTSQLAGLSMTDSIIS 661
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/626 (67%), Positives = 511/626 (81%), Gaps = 22/626 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDLD+SV D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVN+++ +A RAL+
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEM 102
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNFTP+NGKPIRIMYS RDP+ RKSGA NIFIKNLDKSIDNKAL+DTFS FGNILSCKVA
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVA 162
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
T+ G+S+GYGFVQ++ +ESA++AI++LNGMLLNDK+V+VGPF+RKQERE+ +FNN
Sbjct: 163 TEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNN 222
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VYVKNLSE+TTED+LK++FG FG ITS V+R DGKS+CFGFVNF++PDDA +VE LN
Sbjct: 223 VYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLN 282
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD-KLK 339
GKKFDDKE YVG+AQKK EREM+LK FE+S KETAD+ +G NLY+KNLD S+ DD KLK
Sbjct: 283 GKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLK 342
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
ELF+EFGTITSCKVMRD NG+++GSGFVAF ++E+A++AL MNGKMV SKPLYVALAQR
Sbjct: 343 ELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQR 402
Query: 400 KEERRARL--QFSQMR----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQ 452
KEERRARL QFSQMR PPV PRMPMYPP PG+GQQLFYGQ PP + PQPG+G+Q
Sbjct: 403 KEERRARLQAQFSQMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAFVNPQPGYGFQ 462
Query: 453 QQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
Q ++PGMR PN+ +PMVQ GQQ QRP GRR+G G M QQP+P+ +M+PRG
Sbjct: 463 QHMIPGMRPGVAPMPNFVMPMVQQGQQPQRPSGRRAGAGGM---QQPMPMGHQQMVPRGG 519
Query: 507 I--YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPE 564
YRY G +P+ GV GGM P Y++G M D Q + +GALASALAN+ PE
Sbjct: 520 RGGYRYASGRGMPEAAFRGV-GGMAPSLYEMGRMTPGDTGAPQQVSSGALASALANSPPE 578
Query: 565 QQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRN 624
QQR +LGE+LYPLVDQLEHD AAKVTGMLLEMDQTEVLHL+ESP+ALK+KVAEAMEVLR+
Sbjct: 579 QQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKSKVAEAMEVLRS 638
Query: 625 VAQQQATGPSPTDRVASLSLNDNIVS 650
QQQ P D++A+LSL+D V+
Sbjct: 639 AQQQQTN--VPADQLAALSLSDGFVA 662
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/625 (67%), Positives = 510/625 (81%), Gaps = 22/625 (3%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVGDLD+SV D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVN+++ +A RAL+ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
NFTP+NGKPIRIMYS RDP+ RKSGA NIFIKNLDKSIDNKAL+DTFS FGNILSCKVAT
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVAT 163
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNV 221
+ G+S+GYGFVQ++ +ESA++AI++LNGMLLNDK+V+VGPF+RKQERE+ +FNNV
Sbjct: 164 EMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNV 223
Query: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
YVKNLSE+TTED+LK++FG FG ITS V+R DGKS+CFGFVNF++PDDA +VE LNG
Sbjct: 224 YVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNG 283
Query: 282 KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD-KLKE 340
KKFDDKE YVG+AQKK EREM+LK FE+S KETAD+ +G NLY+KNLD S+ DD KLKE
Sbjct: 284 KKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKE 343
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LF+EFGTITSCKVMRD NG+++GSGFVAF ++E+A++AL MNGKMV SKPLYVALAQRK
Sbjct: 344 LFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRK 403
Query: 401 EERRARL--QFSQMR----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQ 453
EERRARL QFSQMR PPV PRMPMYPP PG+GQQLFYGQ PP + PQPG+G+QQ
Sbjct: 404 EERRARLQAQFSQMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAFVNPQPGYGFQQ 463
Query: 454 QLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRI 507
++PGMR PN+ +PMVQ GQQ QRP GRR+G G M QQP+P+ +M+PRG
Sbjct: 464 HMIPGMRPGVAPMPNFVMPMVQQGQQPQRPSGRRAGAGGM---QQPMPMGHQQMVPRGGR 520
Query: 508 --YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQ 565
YRY G +P+ GV GGM P Y++G M D Q + +GALASALAN+ PEQ
Sbjct: 521 GGYRYASGRGMPEAAFRGV-GGMAPSLYEMGRMTPGDTGAPQQVSSGALASALANSPPEQ 579
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625
QR +LGE+LYPLVDQLEHD AAKVTGMLLEMDQTEVLHL+ESP+ALK+KVAEAMEVLR+
Sbjct: 580 QRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKSKVAEAMEVLRSA 639
Query: 626 AQQQATGPSPTDRVASLSLNDNIVS 650
QQQ P D++A+LSL+D V+
Sbjct: 640 QQQQTN--VPADQLAALSLSDGFVA 662
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/629 (66%), Positives = 517/629 (82%), Gaps = 22/629 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDL SV D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVNYN +A R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP+ RKSG GNIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ATD G+SRGYGFVQF+ +ESA+SAIDKLNGML+NDK+VFVGPF+RKQ+RE+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F+NVYVKNLS+T T+D+LK++FG++G ITS VMRD+DGKS+CFGFVNF++ D AA++V
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGK F+DKE YVG+AQKK EREMELK KFE++++E A+KF+ NLY+KNL+++I D+
Sbjct: 272 QELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDE 331
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+E+G ITSCKVMRD NG+SRGSGFVAF +AE+A++ALTEMNGKMV SKPLYVAL
Sbjct: 332 KLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVAL 391
Query: 397 AQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPG 448
AQRKE+R+A+L QFSQMR P VGPRMPM+PP PG+GQQLFYGQ PP I PQ G
Sbjct: 392 AQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQAG 451
Query: 449 FGYQQQLVPGMR-----PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL-MQPRML 502
F +QQ L+PGMR PN+ +PMVQ GQQ QRP GRR+G QQP+P+ Q ++
Sbjct: 452 FAFQQPLMPGMRPGGPMPNFMMPMVQQGQQPQRPAGRRAGG-----MQQPMPMGGQQQVF 506
Query: 503 PR-GRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANA 561
PR GR YRYP G +PD + V G ++P Y++GGMP R+AA QP+ GALA+ALANA
Sbjct: 507 PRGGRGYRYPTGRGMPDPGMHSV-GAVMPPSYEMGGMPMREAA-PQPVPIGALATALANA 564
Query: 562 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
P+QQR +LGENLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEV
Sbjct: 565 PPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEV 624
Query: 622 LRNVAQQQATGPSPTDRVASLSLNDNIVS 650
LR+ Q + S ++A+LSLND +VS
Sbjct: 625 LRSAQHLQQSNVSTEQQLANLSLNDGVVS 653
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/659 (66%), Positives = 525/659 (79%), Gaps = 30/659 (4%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
+P AV A SP G+ G+G A+ +TSLYVGDL+ SV+DSQLY+LF+Q GQVVSV
Sbjct: 14 SPGAVPAVVSPGAVGV----GLGVAQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSV 69
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD+++RRSLGY YVN+N +A RAL+ LNF PLN KPIR+MYS RDP+ R+SG+ N
Sbjct: 70 RVCRDVTSRRSLGYAYVNFNNPLDAARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSAN 129
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLDK IDNK+LH+TFS+FG ILSCKVA D GQS+G+GFVQ++ EE+A++AI LN
Sbjct: 130 IFIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLN 189
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML+NDK VFVGPFLRKQER+ + DKT+FNNV+VKNLSE+TT++DL KIFGE+G ITS
Sbjct: 190 GMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAV 249
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VM DGKS+CFGF+NF++PD A+R+V+ LNGKK +DKEWYVG+AQKK EREMELK +FE
Sbjct: 250 VMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFE 309
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
Q LK+ ADK++GLNLY+KNLDDSI DD+L+ELFS FG ITSCKVMRD NG+S+GSGFVAF
Sbjct: 310 QILKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAF 369
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPV------GPRMP 421
ST EEAS+ALTEMNGKM+ KPLYVA AQRKE+R+A L QFSQMRP V PR+P
Sbjct: 370 STREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLP 429
Query: 422 MYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYF--VPMVQPGQ 472
MYPP+AP QQLFYGQ PP +IPPQPGFG+QQQLVPGMR PNYF V Q GQ
Sbjct: 430 MYPPMAP---QQLFYGQAPPAMIPPQPGFGFQQQLVPGMRPGGPHMPNYFVPVVQHQQGQ 486
Query: 473 QNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVP-VAGVPGGMLPG 531
Q RPG RR G G Q P Q +++PRGR+YRYP G N+P+ P + GV GGM+
Sbjct: 487 QGPRPGIRR-GAGAQGQQPVPP--FQQQIVPRGRMYRYPTGRNMPEAPAMPGVAGGMMQA 543
Query: 532 PYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTG 591
YD+GG P RDAA S Q G L SALANA+PEQQRT+LGENLYPLV+QLE + AAKVTG
Sbjct: 544 -YDMGGFPVRDAALSPAAQIGTLTSALANANPEQQRTILGENLYPLVEQLEPNQAAKVTG 602
Query: 592 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
MLLEMDQTEVLHLLESP+ALK+KVAEAM+VL NVA QQ +PT ++A+LSL + I+S
Sbjct: 603 MLLEMDQTEVLHLLESPDALKSKVAEAMDVLHNVAHQQNAN-TPTSQLAALSLTEGIIS 660
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/617 (73%), Positives = 512/617 (82%), Gaps = 36/617 (5%)
Query: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 82
+G + +G +R F S SLYVGDLDL+V DSQL+DLF+Q+ QVVS+RVCRD +T RSLG
Sbjct: 153 SGTNDEPNIGPSR-FASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLG 211
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNK 142
YGYVNY +A RALD LNFTPLNGKPIRIMYS+RDP+IRKSG GNIFIKNLDK ID+K
Sbjct: 212 YGYVNYTDLEDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHK 271
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
ALHDTFS FGNILSCKVATD+ G S+G+GFVQFD+EE+A+ AIDKLNGMLLNDKQVFVGP
Sbjct: 272 ALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGP 331
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
F+RKQEREST +K +FNNV+VKN+SE TE+DL +IFGEFG ITS VMRD DGKSKCFG
Sbjct: 332 FVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFG 391
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
FVNF++ DDAA SVEALNG+KFDDKEWYVGKAQKK ERE+ELK +FEQ++KE DKF+G
Sbjct: 392 FVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGA 451
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
NLY+KNLDDSI DDKLKELF++FGTITSCKVMRDPNG+SRGSGFVAFS+ EEAS+AL EM
Sbjct: 452 NLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEM 511
Query: 383 NGKMVVSKPLYVALAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLF 435
N KMVVSKPLYVALAQRKE+RRARL QFSQMR P V PR+PMYPP PGLGQQ+F
Sbjct: 512 NSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPPSGPGLGQQMF 571
Query: 436 YG-QGPPIIPPQPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQ 488
YG P IIPPQPGFGYQQQLVPGMR PN+FVP+VQ GQQ QRPGGRR+G PMQ
Sbjct: 572 YGQAPPAIIPPQPGFGYQQQLVPGMRPAGPPMPNFFVPIVQQGQQGQRPGGRRAGAVPMQ 631
Query: 489 QAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQP 548
Q QQ +PLMQ +MLPRGR++RYPPG + DVP MP A SQ
Sbjct: 632 QTQQQVPLMQQQMLPRGRVFRYPPGRGLSDVP-----------------MP----AISQS 670
Query: 549 MQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 608
+ GALA+ALANA P +QRT+LGENLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESP
Sbjct: 671 IPVGALATALANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESP 730
Query: 609 EALKAKVAEAMEVLRNV 625
+ALKAKVAEAMEVLRNV
Sbjct: 731 DALKAKVAEAMEVLRNV 747
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 164/459 (35%), Positives = 233/459 (50%), Gaps = 79/459 (17%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFN 61
AQVQVQPQ P + A QFV+TSLYVGDL+L+VNDSQLYDLF+
Sbjct: 3 AQVQVQPQGPGPAPNGAAGAG-----------GNQFVTTSLYVGDLELNVNDSQLYDLFS 51
Query: 62 QMGQVVSVRVCRDLSTRRSLGYGYVNY--------------------------------- 88
QMG VVSVRVCRDLSTRRSLGYGYVNY
Sbjct: 52 QMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDEKEKETIYEGFCVFCLIPSNYAIFFVLG 111
Query: 89 -NAAHEATRALD--------ELNFTPLNGKPIRIM-------YSYRDPTIRKS--GAGNI 130
+ H+ R + ELNF + G+ + + +P I S + ++
Sbjct: 112 FSYIHKKRRGKERGGELQKRELNFLRVGGEMAEVQDHEGLLSGTNDEPNIGPSRFASASL 171
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKLN 189
++ +LD ++ + LHD FS ++S +V DS S GYG+V + + E A A+D LN
Sbjct: 172 YVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDVLN 231
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LN K + + R+ + K+ N+++KNL + L F FG I S
Sbjct: 232 FTPLNGKPIRI----MYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCK 287
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V DA G SK GFV FD + A ++++ LNG +DK+ +VG +K ERE
Sbjct: 288 VATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERE-------- 339
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T +K + N++VKN+ + ++++ L +F EFG ITS VMRD +G S+ GFV F
Sbjct: 340 ----STINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNF 395
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
++A+ ++ +NG+ K YV AQ+K ER L+
Sbjct: 396 ENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELK 434
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/627 (67%), Positives = 509/627 (81%), Gaps = 18/627 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F Q+G VVSVRVCRD+++R+SLGY YVNYN +A R
Sbjct: 29 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NG+PIRIMYS RDP++RKSG NIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 89 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 148
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+GYGFVQ++ +E+A +AI+KLNGML+NDK+V+VGPF+RKQER+++
Sbjct: 149 CKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGNV 208
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNL+ETTTEDDLK+IFG+FG ITS VMRD DG+SKCFGFVNF+ PD+AA +V
Sbjct: 209 KFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 268
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGKKF DKEWYVG+AQKK ERE+ELK KFE++L+E ADK++ NLY+KNLDD++ D+
Sbjct: 269 QDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDE 328
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+EFGTITSCKVMRD NG SRGSGFVAF +A++AS+AL EMN KMV +KPLYVAL
Sbjct: 329 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVAL 388
Query: 397 AQRKEERRARL--QFSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF 449
AQRKE+R+ARL QFSQMRP VGPRM M PP P +GQQ+FYGQ P I PQPGF
Sbjct: 389 AQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQPPAFINPQPGF 447
Query: 450 GYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
G+QQ +PGMR PN+ +PMVQ GQQ QRP GRR+G G Q + Q
Sbjct: 448 GFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGRRAGAG-GMQQSMQMGQQQMLGRG 506
Query: 504 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASP 563
GR YRY G +PD + GV GG++ PY++GGMP RDA SQP+ GALASALAN+ P
Sbjct: 507 GGRGYRYQTGRGMPDPAMHGV-GGVMTSPYEMGGMPMRDAGESQPVPIGALASALANSPP 565
Query: 564 EQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E QR +LGENLYPLVDQLEHD AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLR
Sbjct: 566 ETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLR 625
Query: 624 NVAQQQATGPSPTDRVASLSLNDNIVS 650
+ QQ T SP ++ASLSLND ++S
Sbjct: 626 SA--QQHTNQSPEQQLASLSLNDGLIS 650
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/627 (68%), Positives = 506/627 (80%), Gaps = 36/627 (5%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q +TSLYVGDLD V DSQLYDLFNQ+GQVVSVR+CRDL++++SLGYGYVN++ H+A
Sbjct: 20 QLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAA 79
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+A+D LNFTPLN KPIRIMYS+RDP++RKSGA NIFIKNLD++ID+KAL+DTFS FGNIL
Sbjct: 80 KAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNIL 139
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCK+A D+ G S+GYGFVQF+NEESA+SAIDKLNGMLLNDK V+VG F RKQ+R++
Sbjct: 140 SCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSN 199
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+FNNVYVKNLSE+ T+DDLK FGE+G ITS VMRD DGKSKCFGFVNF++ D AA +
Sbjct: 200 AKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEA 259
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALNGKKFDDKEWYVGKA KKYERE+ELK + EQS+KET DKF G NLY+KNLDDS++D
Sbjct: 260 VEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTD 319
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KL ELFSEFGT+TSCK++RDP GISRGSGFVAFST EEA++AL EMNGKMV KPLYVA
Sbjct: 320 EKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Query: 396 LAQRKEERRARL--QFSQMRP----PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF 449
AQ+KEER+ARL QFSQ+RP P+ PR+P YP PG+GQQ+ YGQ PP Q GF
Sbjct: 380 PAQKKEERKARLQAQFSQVRPVTMAPIAPRLPFYPAGVPGMGQQIMYGQAPPAFISQAGF 439
Query: 450 GYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
GY QQLVPGMR PN+F+PMVQ GQQ QRPGGRR + PMQQ +P+MQ +M P
Sbjct: 440 GYPQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRGAS-PMQQLPHSLPMMQQQMHP 498
Query: 504 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASP 563
RGR+YRYP G N +P+ GV GG PMQ ALA+ALANA P
Sbjct: 499 RGRVYRYPTGRNPQGIPMPGVAGGT-------------------PMQ--ALATALANAPP 537
Query: 564 EQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
EQQRT+LGE LYPLV+++EH AAKVTGMLLEMDQ EVLHL+ESPEALK KVAEA++VLR
Sbjct: 538 EQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEMDQPEVLHLIESPEALKTKVAEAVDVLR 597
Query: 624 NVAQQQATGPSPTDRVASLSLNDNIVS 650
NVAQQQ+ SPTD++ASLSLNDN+ S
Sbjct: 598 NVAQQQSN--SPTDQLASLSLNDNLES 622
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 167/292 (57%), Gaps = 17/292 (5%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD +++ LYD F+ G ++S ++ D S S GYG+V + A
Sbjct: 107 RKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASG-LSKGYGFVQFENEESA 165
Query: 95 TRALDELNFTPLNGKPIRIMY----SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A+D+LN LN KP+ + + RD + + N+++KNL +S+ + L +TF
Sbjct: 166 QSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGE 225
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
+G I S V D G+S+ +GFV F+N ++A A++ LNG +DK+ +VG L+K ERE
Sbjct: 226 YGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERE 285
Query: 211 ------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
T DK N+Y+KNL ++ T++ L ++F EFG +TS ++RD G S
Sbjct: 286 LELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGIS 345
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ GFV F P++A R++ +NGK K YV AQKK ER+ L+ +F Q
Sbjct: 346 RGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQ 397
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/631 (67%), Positives = 512/631 (81%), Gaps = 24/631 (3%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVGDL+ +V DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVNY+ +A RA+
Sbjct: 121 TTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAM 180
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LNF PLN KPIR+MYS RDP+ R+SG+ NIFIKNLDK+IDNK LHDTFS FG ILSCK
Sbjct: 181 EALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCK 240
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D +GQS+G+GFVQ++ EESA+SA+ LNGML+NDK V+VGPFLRKQER++++DK +F
Sbjct: 241 VAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKF 300
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNV+VKNLSE+TT++DL K+F E+G ITS VM DGKS+CFGFVNF+ PDDAAR+VE
Sbjct: 301 NNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEE 360
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNGKK +DKEWYVG+AQKK EREM+LK +FEQS+K+ ADK++G NLY+KNLDD I+DD+L
Sbjct: 361 LNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQL 420
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ELFS FG ITSCK+MRD NG+S+GSGFV+FST EEAS+ALTEMNGKM+ KPLYVA AQ
Sbjct: 421 RELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQ 480
Query: 399 RKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYG-QGPPIIPPQPGFG 450
RKEER+A L QFSQMR P + PR+PMYPP+ P LGQQLFYG P ++PPQPG+G
Sbjct: 481 RKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYPPM-PTLGQQLFYGQAPPAMMPPQPGYG 539
Query: 451 YQQQLVPGMR-------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
+QQQLVPGMR PNYFVP+VQPGQQ RPG RRSG G Q Q Q +M+P
Sbjct: 540 FQQQLVPGMRPGGGAHMPNYFVPVVQPGQQGPRPGMRRSGPGSAQGQQT-PQPFQQQMVP 598
Query: 504 RGRIYRYPPG----CNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALA 559
RGR+YRYPPG + +P GV GGM+ PYD+G P RDA S G L SALA
Sbjct: 599 RGRVYRYPPGPRHMAEVQQMPGVGV-GGMVQ-PYDMGSFPVRDAGVSPAPPIGTLTSALA 656
Query: 560 NASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
NA+PEQQRT+LGE+LYPLV++LEH AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM
Sbjct: 657 NATPEQQRTILGESLYPLVEKLEHQQAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAM 716
Query: 620 EVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
+VLRNVAQQQ +PT ++A LSL+D I+S
Sbjct: 717 DVLRNVAQQQNPN-APTSQLAGLSLSDGIIS 746
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/636 (68%), Positives = 518/636 (81%), Gaps = 30/636 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVGDLD +V DSQL++ F+Q GQVVSVRVCRD++TRRSLGYGYVNY +A+RAL
Sbjct: 38 TTSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 97
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELNF LNG+ IR+MYS RDP++RKSG GNIFIKNLDKSID+KALH+TFS FG ILSCK
Sbjct: 98 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 157
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D GQS+GYGFVQ+D +E+A+ AIDKLNGMLLNDKQV+VGPF+ K +R+ + +K +F
Sbjct: 158 VAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKF 217
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKNLSE+ ++++L K+FGEFG+ TS +MRD +GKSK FGFVNF++ DDAAR+V+A
Sbjct: 218 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 277
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNGK FDDKEW+VGKAQKK ERE ELK KFEQSLKE ADK +G NLYVKNLD+S++DDKL
Sbjct: 278 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 337
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+E F+ FGTITSCKVMRDP G+SRGSGFVAFST EEAS+A+TEMNGKM+V+KPLYVALAQ
Sbjct: 338 REHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQ 397
Query: 399 RKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFG 450
RKE+R+ARL QFSQMR P VGPRM MYPP P +GQQLFYGQGPP +IPPQPGFG
Sbjct: 398 RKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIPPQPGFG 457
Query: 451 YQQQLVPGMR------PNYFVPMV--------QPGQQNQRPGGRRSGTGPMQQAQQPIPL 496
YQQQLVPGMR PN+F+PM+ Q QQ Q+ G G + Q QQP P+
Sbjct: 458 YQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQQQRPGGGRRGGALPQPQQPSPM 517
Query: 497 MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDI---GGMPFRDAAFSQPMQTGA 553
MQ +M PRGR+YRYP ++ +P G+ ML PYD+ GG+ RD+ SQ + GA
Sbjct: 518 MQQQMHPRGRMYRYPQ-RDVNTMP--GLTPNMLSVPYDVSSGGGVHHRDSPASQSVPIGA 574
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
LA+ LANA+PEQQRT+LGENLYPLV+QLE ++AAKVTGMLLEMDQTEVLHLLESPEALKA
Sbjct: 575 LATQLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKA 634
Query: 614 KVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIV 649
KV EAM+VLR+VAQQQA G + D++ASLSL DNIV
Sbjct: 635 KVTEAMDVLRSVAQQQAGGAA--DQLASLSLGDNIV 668
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/641 (69%), Positives = 530/641 (82%), Gaps = 35/641 (5%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G A QF +TSLYVGDLD +V DSQL+D F+QMGQVVSVRVCRDL+TRRSLGYGYVN+
Sbjct: 30 GAAAAAQFGTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFT 89
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+ +A RA+ ELN+ PLNGKP+R+MYS+RDP++R+SGAGNIFIKNLDKSID+KALHDTFS
Sbjct: 90 SPQDAARAIQELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFS 149
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNI+SCKVA DS GQS+GYGFVQ++ EESA+ A+ +LNGMLLNDKQV+VGPFLR+QER
Sbjct: 150 VFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQER 209
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+ST +KT F NVYVKNL+E+TT+DDLK IFGEFG ITS VM+D +GK K FGFVNF++
Sbjct: 210 DSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENA 269
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
DDAA++VE+LNGK FDDKEW+VG+AQKK EREMELK ++EQSLKE ADKF+ NLYVKNL
Sbjct: 270 DDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNL 329
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DDS+SD+KLKELF+ +GT+TSCKVMRDPNG+SRGSGFVAFST EEA+KA++EM+GKM+ +
Sbjct: 330 DDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIEN 389
Query: 390 KPLYVALAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP- 441
KPLYVA+AQRKE+RRARL QFSQMR PPVGPRMP+YPP PG+GQ +FYGQ PP
Sbjct: 390 KPLYVAVAQRKEDRRARLQAQFSQMRPVAMPPPVGPRMPIYPPGGPGIGQPMFYGQAPPT 449
Query: 442 IIPPQPGFGYQQQLVPGMRP------NYFVPMVQPGQQNQRPGGRRSG--TGPMQQAQQP 493
+I QPGFGYQQQLVPGMRP N+F+PMVQ GQ QRPGGR G QQ Q P
Sbjct: 450 MISSQPGFGYQQQLVPGMRPGGAPMHNFFMPMVQQGQ--QRPGGRHPGGIQQSQQQQQVP 507
Query: 494 IPLMQPRMLPRGRIYRYPPGCNI---PDVPVAGVPGGMLPGPYDIGG-MPFRDAAFSQPM 549
+ Q +M PRGR++RYP G PDVP GML PY++G MP RD SQ +
Sbjct: 508 MMQQQHQMHPRGRMFRYPQGRGSGGPPDVP------GML--PYEMGSNMPLRDPVLSQHV 559
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
GALAS+LANA+PE QRTLLGENLYPLV+QLE ++AAKVTGMLLEMDQTEVLHLLESPE
Sbjct: 560 PIGALASSLANAAPELQRTLLGENLYPLVEQLEAESAAKVTGMLLEMDQTEVLHLLESPE 619
Query: 610 ALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
ALKAKVAEAM+VLR+VA A G + +++ASL+LNDN+VS
Sbjct: 620 ALKAKVAEAMDVLRSVA---AGGSA--EQLASLNLNDNLVS 655
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/629 (66%), Positives = 513/629 (81%), Gaps = 28/629 (4%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDL SV D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVNYN +A R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP+ RKSG GNIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ATD G+SRGYGFVQF+ +ESA+SAIDKLNGML+NDK+VFVGPF+RKQ+RE+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F+NVYVKNLS+T T+D+LK++FG++G ITS VMRD+DGKS+CFGFVNF++ D AA++V
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGK F+DKE YVG+AQKK EREMELK KFE++++E A+KF+ NLY+KNL+++I D+
Sbjct: 272 QELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDE 331
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+E+G ITSCKVMRD NG+SRGSGFVAF +AE+A++ALTEMNGKMV SKPLYVAL
Sbjct: 332 KLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVAL 391
Query: 397 AQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPG 448
AQRKE+R+A+L QFSQMR P VGPRMPM+PP PG+GQQLFYGQ PP I P
Sbjct: 392 AQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINP--- 448
Query: 449 FGYQQQLVPGMR-----PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL-MQPRML 502
QQ L+PGMR PN+ +PMVQ GQQ QRP GRR+G QQP+P+ Q ++
Sbjct: 449 ---QQPLMPGMRPGGPMPNFMMPMVQQGQQPQRPAGRRAGG-----MQQPMPMGGQQQVF 500
Query: 503 PR-GRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANA 561
PR GR YRYP G +PD + V G ++P Y++GGMP R+AA QP+ GALA+ALANA
Sbjct: 501 PRGGRGYRYPTGRGMPDPGMHSV-GAVMPPSYEMGGMPMREAA-PQPVPIGALATALANA 558
Query: 562 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
P+QQR +LGENLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEV
Sbjct: 559 PPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEV 618
Query: 622 LRNVAQQQATGPSPTDRVASLSLNDNIVS 650
LR+ Q + S ++A+LSLND +VS
Sbjct: 619 LRSAQHLQQSNVSTEQQLANLSLNDGVVS 647
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/635 (67%), Positives = 513/635 (80%), Gaps = 32/635 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVGDLD +V DSQL++ F Q GQVVSVRVCRD++TRRSLGYGYVNY +A+RAL
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELNF LNG+ IR+MYS RDP++RKSG GNIFIKNLDKSID+KALH+TFS FG ILSCK
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D GQS+GYGFVQ+D +E+A+ AIDKLNGMLLNDKQV+VGPF+ K +R+ + +K +F
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKF 223
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKNLSE+ ++++L K+FGEFG+ TS +MRD +GKSK FGFVNF++ DDAAR+V+A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNGK FDDKEW+VGKAQKK ERE ELK KFEQSLKE ADK +G NLYVKNLD+S++DDKL
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+E F+ FGTITSCKVMRDP+G+SRGSGFVAFST EEA++A+TEMNGKM+V+KPLYVALAQ
Sbjct: 344 REHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
Query: 399 RKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 451
RKE+R+ARL QFSQMR P VGPRM MYPP P +GQQLFYGQGPP + PQPGFGY
Sbjct: 404 RKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIPQPGFGY 463
Query: 452 QQQLVPGMR------PNYFVPMV-----QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPR 500
QQQLVPGMR PN+F+PM+ Q QQ Q+ G + Q QQP P+MQ +
Sbjct: 464 QQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQPSPMMQQQ 523
Query: 501 MLPRGRIYRYPPGCNIPDVPVAGVPG---GMLPGPYDI---GGMPFRDAAFSQPMQTGAL 554
M PRGR+YRY P V +PG ML PYD+ GG+ RD+ SQP+ AL
Sbjct: 524 MHPRGRMYRY------PQRDVNTMPGPTQNMLSVPYDVSSGGGVHHRDSPTSQPVPIVAL 577
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
A+ LANA+PEQQRT+LGENLYPLV+QLE ++AAKVTGMLLEMDQTEVLHLLESPEALKAK
Sbjct: 578 ATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAK 637
Query: 615 VAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIV 649
V EAM+VLR+VAQQQA G + D++ASLSL DNIV
Sbjct: 638 VTEAMDVLRSVAQQQAGGAA--DQLASLSLGDNIV 670
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/662 (65%), Positives = 525/662 (79%), Gaps = 50/662 (7%)
Query: 1 MAQVQVQPQAP--VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYD 58
MAQVQ+Q Q P A +PAT+G A A QF +TSLYVGDLD +V DSQL+D
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGAT------ATQFGNTSLYVGDLDFNVTDSQLFD 54
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
F QMG VV+VRVCRDL TRRSLGYGYVN+ +A RA+ ELN+ PL GKPIR+MYS+R
Sbjct: 55 AFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR 114
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DP++R+SGAGNIFIKNLD+SID+KALHDTFS+FGNI+SCKVA DS GQS+GYGFVQ+ NE
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANE 174
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
ESA+ AI+KLNGMLLNDKQV+VGPFLR+QER+STA+KT+F NVYVKNL+E+TT+DDLK
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
FGE+G ITS VM+D +GKSK FGFVNF++ DDAAR+VE+LNG KFDDKEWYVG+AQKK
Sbjct: 235 FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL+ ++EQ+LKE ADKF+ NLYVKNLD SISD+KLKE+FS FGT+TS KVMRDPN
Sbjct: 295 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 354
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR--- 413
G S+GSGFVAF+T EEA++A+++++GKM+ SKPLYVA+AQRKE+RR RL QFSQ+R
Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVA 414
Query: 414 --PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYF 464
P VGPRMP+YPP PG+GQQ+FYGQ PP +IPPQPG+GYQQQLVPGMR P++F
Sbjct: 415 MQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFF 474
Query: 465 VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPG-CNIPDVPVAG 523
+PMVQP QQ G +Q +QQ P+MQ +M PRGR++RYP G DVP
Sbjct: 475 MPMVQPQQQRPG---GGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVP--- 528
Query: 524 VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEH 583
PYD+G + P+ GALAS L+NA+PEQQRT+LGE LYPLV+Q+E
Sbjct: 529 --------PYDMGN--------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEA 572
Query: 584 DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLS 643
++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA A T+++ASL+
Sbjct: 573 ESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGA-----TEQLASLN 627
Query: 644 LN 645
L+
Sbjct: 628 LS 629
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/659 (66%), Positives = 522/659 (79%), Gaps = 48/659 (7%)
Query: 1 MAQVQVQPQAP--VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYD 58
MAQVQ+Q Q P VA +P T+G A G G +TSLYVGDLD++V DSQL+D
Sbjct: 1 MAQVQLQGQTPNGSTVAVTSAPVTSGGATAAGFG------TTSLYVGDLDVNVTDSQLFD 54
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
F+QMG VVSVRVCRDL+TRRSLGYGYVN+ +A RA+ ELN+ PL GKPIR+MYS+R
Sbjct: 55 AFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR 114
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DP++R+SGAGNIFIKNLD+SID+KALHDTFS FGNI+SCKVA DS GQS+GYGFVQ+ NE
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANE 174
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
ESA+ AI+KLNGMLLNDKQV+VGPFLR+QER+STA+KT+F NVYVKNL+E+TT+DDLK
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
FGE+G ITS VM+D DGKSK FGFVNF++ DDAAR+VE+LNG KFDDKEWYVG+AQKK
Sbjct: 235 FGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL+ ++EQ+LKE ADKF+ NLYVKNLD SISD+KLKE+FS FGT+TSCKVMRDPN
Sbjct: 295 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPN 354
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR----- 413
G S+GSGFVAFST EEA++A+++++GKM+ SKPLYVA+AQRKE+RRA QFSQ+R
Sbjct: 355 GTSKGSGFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRA--QFSQVRPVAMQ 412
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLV------PGMRPNYFVP 466
P VGPRMP+YPP PG+GQQ+FYGQGPP +IPPQPGFGYQQQLV G PN+F+P
Sbjct: 413 PSVGPRMPVYPPGGPGIGQQMFYGQGPPTMIPPQPGFGYQQQLVPGMRPGGGPGPNFFMP 472
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPG 526
MVQ QQ G +Q QQ P+MQ +M PRGR++RYP G
Sbjct: 473 MVQQQQQRPG---GGRRPGGIQHPQQQNPMMQQQMHPRGRMFRYPQGRG---------GS 520
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
G +P PYD+G + P+ GALAS LANASPEQQRT+LGE+LYPLV+QLE ++A
Sbjct: 521 GEVP-PYDMGN--------NMPLPIGALASHLANASPEQQRTMLGESLYPLVEQLEAESA 571
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLN 645
AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA A +++ASL+L+
Sbjct: 572 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGA-----AEQLASLNLS 625
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/628 (68%), Positives = 517/628 (82%), Gaps = 24/628 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDLD+SV D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVN+++ +A RA++
Sbjct: 42 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME 101
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNFTP+NGKPIRIMYS RDP+ RKSGA NIFIKNLDKSIDNKAL DTFS FG ILSCKV
Sbjct: 102 MLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILSCKV 161
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
AT+ G+S+GYGFVQ++ +ESA++AI++LNGMLLNDK+V+VGPF+RKQERE+ +FN
Sbjct: 162 ATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFN 221
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNLSE+TTED+LK++FG+FG ITS V+R DGKS+CFGFVNF++PDDAAR+VE L
Sbjct: 222 NVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDL 281
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD-KL 338
NGKK DDKE YVG+AQKK EREM+LK KFE+S KETADK +G NLY+KNLD S+ DD KL
Sbjct: 282 NGKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEKL 341
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KELF+EFGTITSCKVMRD NG+++GSGFVAF ++E+AS+AL MNGKMV SKPLYVALAQ
Sbjct: 342 KELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLYVALAQ 401
Query: 399 RKEERRARL--QFSQ-----MRPPVGPRMPMYPPVAPGLGQQLFYGQ-GPPIIPPQPGFG 450
RKEERRARL QFSQ M PPV PRMPMYPP PG+GQQ+FYGQ PP + PQPGFG
Sbjct: 402 RKEERRARLQAQFSQMRPVVMPPPVAPRMPMYPPGVPGMGQQMFYGQPPPPFVNPQPGFG 461
Query: 451 YQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+QQ ++PGMR PN+ +PMVQ GQQ QRP GRR+G G M QQP+P+ +MLPR
Sbjct: 462 FQQHMIPGMRPGVAPMPNFVMPMVQQGQQPQRPSGRRAGAGGM---QQPMPMGHQQMLPR 518
Query: 505 GRI--YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANAS 562
G YRY G +PD P GV GGM+P PY++G M D Q + +G LASALAN+
Sbjct: 519 GGRGGYRYASGRGMPDSPFRGV-GGMVPSPYEMGRMTLNDNGAPQQVPSGTLASALANSP 577
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
PEQQR +LGE+LYPLVDQLEHD AAKVTGMLLEMDQTEVLHL+ESP+ALK+KVAEAM+VL
Sbjct: 578 PEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKSKVAEAMDVL 637
Query: 623 RNVAQQQATGPSPTDRVASLSLNDNIVS 650
R+ AQQQ + +P D++A+LSL+D V+
Sbjct: 638 RS-AQQQTS--APADQLAALSLSDGFVA 662
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/574 (76%), Positives = 493/574 (85%), Gaps = 19/574 (3%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD LNFTP NGKPIR+MYS+RDP+IRKSGAGNIFIKNLDK+ID+KALHDTFS FG+
Sbjct: 5 AARALDVLNFTPXNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGS 64
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA DS GQS+GYGFVQFDNEESA AI+KLNGMLLNDKQV+VGPFLRKQER+
Sbjct: 65 ILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVV 124
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
DK++FNNV+VKNLSETTTE+DL K F EFG +TS VMRDADGKS+CFGFVNF++ DDAA
Sbjct: 125 DKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAA 184
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+V+ LNGK DDKEWYVGKAQKK ERE+ELK +FEQ++KE ADK++G NLY+KNLDDSI
Sbjct: 185 RAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSI 244
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DDKLKELF+ FGTITSCKVMRDPNGISRGSGFVAFST +EAS+AL EMNGKMVVSKPLY
Sbjct: 245 GDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLY 304
Query: 394 VALAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPP 445
VALAQRKE+RRARL QFSQ+R V PRMP+YPP PG+GQQLFYGQ PP +IP
Sbjct: 305 VALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYPPGGPGIGQQLFYGQAPPAMIPS 364
Query: 446 QPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP 499
Q GFGYQQQLVPG+R PN+FVPMVQ GQQ QRPGGRR+G +QQ QQP+P+MQ
Sbjct: 365 QGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGA--VQQTQQPVPMMQQ 422
Query: 500 RMLPR-GRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASAL 558
+MLPR GR+YRYPPG +PDV + GV GGM PYD+GGMP RDAA SQP+ GALASAL
Sbjct: 423 QMLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASAL 482
Query: 559 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
ANA+P+QQRT+LGENLYPLV+QLE DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 483 ANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 542
Query: 619 MEVLRNV--AQQQATGPSPTDRVASLSLNDNIVS 650
MEVLRNV AQQQ + D++ASLSL +N+VS
Sbjct: 543 MEVLRNVAAAQQQQQAGNAADQLASLSLTENLVS 576
Score = 198 bits (504), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 171/292 (58%), Gaps = 17/292 (5%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD +++ L+D F+ G ++S +V D S+ +S GYG+V ++ A
Sbjct: 34 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALD-SSGQSKGYGFVQFDNEESA 92
Query: 95 TRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
+A+++LN LN K + + RD + KS N+F+KNL ++ + L+ FS
Sbjct: 93 LKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSE 152
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG + S V D+ G+SR +GFV F+N + A A+D LNG L++DK+ +VG +K ERE
Sbjct: 153 FGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSERE 212
Query: 211 ------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
ADK + N+Y+KNL ++ +D LK++F FG ITS VMRD +G S
Sbjct: 213 VELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGIS 272
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ GFV F PD+A+R++ +NGK K YV AQ+K +R L+ +F Q
Sbjct: 273 RGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQ 324
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ +LY+ +LD S+ D +L +LF G + S +V RD S G G+V ++ E
Sbjct: 227 ADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRD-PNGISRGSGFVAFSTPDE 285
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A+RAL E+N + KP+ + + R
Sbjct: 286 ASRALVEMNGKMVVSKPLYVALAQR 310
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/646 (65%), Positives = 516/646 (79%), Gaps = 48/646 (7%)
Query: 15 AAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
A +PAT+G A A QF +TSLYVGDLD +V DSQL+D F QMG VV+VRVCRD
Sbjct: 1 AVTSAPATSGGAT------ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRD 54
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
L TRRSLGYGYVN+ +A RA+ ELN+ PL GKPIR+MYS+RDP++R+SGAGNIFIKN
Sbjct: 55 LVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKN 114
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD+SID+KALHDTFS+FGNI+SCKVA DS GQS+GYGFVQ+ NEESA+ AI+KLNGMLLN
Sbjct: 115 LDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLN 174
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
DKQV+VGPFLR+QER+STA+KT+F NVYVKNL+E+TT+DDLK FGE+G ITS VM+D
Sbjct: 175 DKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG 234
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKE 314
+GKSK FGFVNF++ DDAAR+VE+LNG KFDDKEWYVG+AQKK ERE EL+ ++EQ+LKE
Sbjct: 235 EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE 294
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374
ADKF+ NLYVKNLD SISD+KLKE+FS FGT+TS KVMRDPNG S+GSGFVAF+T EE
Sbjct: 295 AADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEE 354
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVA 427
A++A+++++GKM+ SKPLYVA+AQRKE+RR RL QFSQ+R P VGPRMP+YPP
Sbjct: 355 ATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGG 414
Query: 428 PGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGR 480
PG+GQQ+FYGQ PP +IPPQPG+GYQQQLVPGMR P++F+PMVQP QQ
Sbjct: 415 PGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPG---G 471
Query: 481 RSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPG-CNIPDVPVAGVPGGMLPGPYDIGGMP 539
G +Q +QQ P+MQ +M PRGR++RYP G DVP PYD+G
Sbjct: 472 GRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVP-----------PYDMGN-- 518
Query: 540 FRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQT 599
+ P+ GALAS L+NA+PEQQRT+LGE LYPLV+Q+E ++AAKVTGMLLEMDQT
Sbjct: 519 ------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQT 572
Query: 600 EVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLN 645
EVLHLLESPEALKAKVAEAM+VLR+VA A T+++ASL+L+
Sbjct: 573 EVLHLLESPEALKAKVAEAMDVLRSVAAGGA-----TEQLASLNLS 613
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/617 (65%), Positives = 475/617 (76%), Gaps = 50/617 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL+ SV DSQLY+ F GQV+SVRVCRD+ RS G YVN+N +A RAL+
Sbjct: 40 SLYVGDLEASVTDSQLYE-FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALEL 98
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF PLNGKPIR+MYS RDP+ R+SG+ NIFIKNLDK+ID+K LHDTFS FGNILSCKVA
Sbjct: 99 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 158
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD +GQS+G+GFVQ+D E+A+SAI LNGML+NDK V+VGPFLRKQERE++ DKT+FNN
Sbjct: 159 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 218
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNLSE+TT++DL KIFG +G ITS +M DGKS+CFGF+NF PDDAAR+VE LN
Sbjct: 219 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 278
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GKK +DKEWYVG+AQKK ERE+ELK +FEQS+K+ ADK++GLNLY+KNLDDSI DD+L E
Sbjct: 279 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 338
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LFS +G ITSCK+MRD NG+S+GSGFVAFST EEAS+ALTEMNGKM+ KPLYVA AQRK
Sbjct: 339 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 398
Query: 401 EERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMR 460
E+R+A L QPGFG+QQQLVPGMR
Sbjct: 399 EDRKAML--------------------------------------QPGFGFQQQLVPGMR 420
Query: 461 ------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 514
PNYFVP+VQ GQQ RPG RRSG G Q QQ Q +MLPRGR+YRYPP
Sbjct: 421 PGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSA-QGQQSAQPFQQQMLPRGRVYRYPPAH 479
Query: 515 NIPDV-PVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGEN 573
N+PDV P+ GV GGM+ YD+GG P RDA S P G L SALANA+PEQQRT+LGE+
Sbjct: 480 NMPDVPPMPGVAGGMIQS-YDMGGFPVRDAGLS-PAPIGTLTSALANANPEQQRTILGES 537
Query: 574 LYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGP 633
LYPLV+ LE ++AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM+VLRNVAQQ
Sbjct: 538 LYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQH-NAN 596
Query: 634 SPTDRVASLSLNDNIVS 650
+PT ++A+LSL D I+S
Sbjct: 597 TPTSQLAALSLGDAIIS 613
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/629 (63%), Positives = 488/629 (77%), Gaps = 25/629 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
FVSTSLYVGDLD +V+++QLYDLFNQ+GQV+S+RVCRDL TRRSLGY YVNYN +ATR
Sbjct: 1 FVSTSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATR 60
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGK +RIM+S+RDP+IRKSG NIFIKNLD++IDNKALHDTF +FGNILS
Sbjct: 61 ALELLNFTPVNGKAVRIMFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNILS 120
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATDS GQS+GYGFVQF+ EESA+ AIDK+NGML+ +KQVFVGPF+R+QERE
Sbjct: 121 CKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQEREQNG--- 177
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNV+VKNL E+TT+D+LK++FG FG ITS VMRD+DGKSKCFGFVNF++PD+AA++V
Sbjct: 178 KFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAV 237
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LNGKK +DKEWYVG+AQKK ERE EL+ K+EQ KE D+++G NLY+KNLDD + D+
Sbjct: 238 VGLNGKKIEDKEWYVGRAQKKSEREAELRAKYEQERKERIDRYQGANLYLKNLDDDVDDE 297
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L+E+F++FG+ITSCKVMRD G S+GSGFVA+S EEA++A EMNGKM+ SKP+YVA+
Sbjct: 298 RLREIFADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAM 357
Query: 397 AQRKEERRARL--QFSQMRPPVG--PRMPMYPPVAPGLGQQLFYGQGPPIIPPQP-GFGY 451
AQRKEERRA+L QF+QMR PVG MPMY P APGLGQQLFYGQ P ++PPQP GF Y
Sbjct: 358 AQRKEERRAKLQAQFAQMRSPVGVATTMPMYHPGAPGLGQQLFYGQPPALMPPQPAGFAY 417
Query: 452 QQQLVPGMR------PNYFVPMVQ-PGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
QQQ++ GMR P+YFVP+VQ G Q + Q + + R
Sbjct: 418 QQQML-GMRPGGGQLPSYFVPVVQRQGPQGGQRAAGARRGAAGTPVPQQQLPPPQQQMIR 476
Query: 505 G-RIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPF-RDAAFSQPMQTGALASALANA 561
G R +RY P N P+VPV +LP P +I +P + + GALASALA+A
Sbjct: 477 GNRNFRYTPSARNTPEVPVPPQLVNVLPVPLEIPSVPLTPVSPLPPSLPIGALASALASA 536
Query: 562 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
SPE QR +LGE LYPLVDQLEHD+A KVTGMLLEMDQTE+LHLLE+P+ALKAKVAEAMEV
Sbjct: 537 SPEHQRVMLGEQLYPLVDQLEHDHAGKVTGMLLEMDQTEILHLLEAPDALKAKVAEAMEV 596
Query: 622 LRNVAQQQATGPSPTDRVASLSLNDNIVS 650
LR + SP+ +ASLSLN+ I S
Sbjct: 597 LRQAQR------SPSTELASLSLNEPIPS 619
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 14/289 (4%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD ++++ L+D F G ++S +V D S +S GYG+V + A
Sbjct: 87 RKSGTANIFIKNLDRAIDNKALHDTFVSFGNILSCKVATD-SNGQSKGYGFVQFEQEESA 145
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGN 153
A+D++N + K + + R ++G N+F+KNL +S + L + F FG
Sbjct: 146 QVAIDKVNGMLVAEKQVFVGPFVRRQEREQNGKFNNVFVKNLGESTTDDELKEVFGAFGK 205
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
I S V DS G+S+ +GFV F+N + A A+ LNG + DK+ +VG +K ERE+
Sbjct: 206 ITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLNGKKIEDKEWYVGRAQKKSEREAEL 265
Query: 213 -----------ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
D+ + N+Y+KNL + ++ L++IF +FG ITS VMRDA G+SK
Sbjct: 266 RAKYEQERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQSKGS 325
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
GFV + P++A R+ +NGK K YV AQ+K ER +L+ +F Q
Sbjct: 326 GFVAYSAPEEANRATIEMNGKMIGSKPIYVAMAQRKEERRAKLQAQFAQ 374
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/632 (64%), Positives = 494/632 (78%), Gaps = 29/632 (4%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
FVSTSLYVGDL+ +V+++QLY++F+Q+GQVVS+RVCRDL TRRSLGY YVNYN A +ATR
Sbjct: 21 FVSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATR 80
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF +NGKPIRIM+S+RDP+IRKSG NIFIKNLDKSIDNKALHDTF+ FG ILS
Sbjct: 81 ALELLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILS 140
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD GQS+GYGFVQF+ EESA++AI+K+NGMLLNDKQVFVGPF+R+QER+ + +
Sbjct: 141 CKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGVVS 200
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNL+++TT+D+LKK+F +G I+S VMRD +GKSKCFGFVNF+ DDAA++V
Sbjct: 201 KFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAV 260
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALNGKKFD+KEWYVG+AQKK ERE EL+ KFEQ KE +K++G+NLY+KNLDD+I D+
Sbjct: 261 EALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDE 320
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E+FSE+GTI SCKVMRDP G SRGSGFVAFS+ +EA++A+TEMNGKMV SKPLYVAL
Sbjct: 321 KLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYVAL 380
Query: 397 AQRKEERRARLQ--FSQMRPPVGP----RMPMYPPVAPGLGQQL-FYGQGPP-IIPPQP- 447
AQRKEERR RLQ F+Q R PVGP +PMY P PG+G + +YGQ PP IP QP
Sbjct: 381 AQRKEERRNRLQAAFAQ-RTPVGPAVPTSLPMYHPAGPGMGPGMSYYGQHPPGPIPLQPA 439
Query: 448 GFGYQQQLV-PG--MRPNYF-VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
FGYQ QL+ PG PNY P V P +Q Q+ G Q QQ Q +M+
Sbjct: 440 AFGYQPQLIRPGGAQFPNYMGFPNVPPLRQGQQGQRAGGRRGGAPQQQQ----PQQQMIQ 495
Query: 504 RG--RIYRYPPGC-NIPD--VPVAGVPGGMLPGPYDIGGMPFRDA---AFSQPMQTGALA 555
RG R +RY N PD VP G+ G MLP P +IGG+P +A QP+ ALA
Sbjct: 496 RGGNRNFRYTTNARNTPDVAVPPQGIMGAMLPVPIEIGGVPVANADAGVPQQPLPISALA 555
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
SALA+A PEQQR +LGE LYPLVDQLEHD A KVTGMLLEMDQTEVLHL+ESPEALKAKV
Sbjct: 556 SALASAPPEQQRAMLGEQLYPLVDQLEHDFAGKVTGMLLEMDQTEVLHLIESPEALKAKV 615
Query: 616 AEAMEVLRNVAQQQATGPSPTDRVASLSLNDN 647
AEAM+VLR QA PTD++ +L++ D+
Sbjct: 616 AEAMDVLR---MAQAVPSPPTDQLGNLAIGDS 644
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/634 (64%), Positives = 491/634 (77%), Gaps = 34/634 (5%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
FVSTSLYVGDL+ +V+++QLY+LF Q+GQVVS+RVCRDL TRRSLGY YVNYN+A +ATR
Sbjct: 25 FVSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATR 84
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF+ LNG PIRIM+S+RDP+IRKSG NIFIKNLDK+IDNKALHDTFS FG ILS
Sbjct: 85 ALELLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILS 144
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA D GQS+GYGFVQF+ EESA +AI+K+NGMLLNDKQVFVGPF+R+QER+ + +
Sbjct: 145 CKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVS 204
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNL E TTEDDLK +FG +G I+S VMRD+DGKSKCFGFVNF+ PD+AA++V
Sbjct: 205 KFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAV 264
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALNGKK D+KEWYVG+AQKK ERE EL+ KFEQ KE +K++G+NLY+KNLDD++ D+
Sbjct: 265 EALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDE 324
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+++GTITSCKVMRDP G SRGSGFVAFS+ EEA++A+TEMNGKMV SKPLYVAL
Sbjct: 325 KLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVAL 384
Query: 397 AQRKEERRARLQ--FSQMRPPVGP----RMPMYPPVAPGLGQQL-FYGQGPP-IIPPQP- 447
AQRKEERRARLQ F+QMR V P +PMY P PG+ Q+ +YGQ P IP QP
Sbjct: 385 AQRKEERRARLQAAFAQMRTSVSPAVPTSLPMYHP-GPGMSPQMPYYGQHPSGPIPLQPA 443
Query: 448 GFGYQQQLV-PG--MRPNYF----VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPR 500
FGYQ Q++ PG PNY VP+ Q Q + +G QQ +Q +
Sbjct: 444 AFGYQPQIIRPGGAQFPNYIGYANVPLRQGQQGQR------AGGRRGGAPQQQQQQLQQQ 497
Query: 501 MLPRG--RIYRYPPGC-NIPD--VPVAGVPGGMLPGPYDIGGMPFRDA---AFSQPMQTG 552
M+ RG R RY P N+PD VP G+ G M+P P +IGG+P + QP+
Sbjct: 498 MIQRGGNRNLRYTPNARNMPDTAVPPQGIMGAMVPVPLEIGGLPVANVDSGVPQQPLPIS 557
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
ALASALA+A PEQQR +LGE LYPLVDQLEHD A KVTGMLLEMDQTEVLHL+ESPEAL+
Sbjct: 558 ALASALASAPPEQQRAMLGEQLYPLVDQLEHDYAGKVTGMLLEMDQTEVLHLIESPEALR 617
Query: 613 AKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
AKVAEAM+VLR QA +PTD + +LS+++
Sbjct: 618 AKVAEAMDVLR---MAQAAPVAPTDELGNLSISN 648
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/634 (64%), Positives = 492/634 (77%), Gaps = 29/634 (4%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QFVSTS+YVGDL+ +V+++QLY++F+Q G VVS+RVCRDL TRRSLGY YVNY++A +AT
Sbjct: 20 QFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDAT 79
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RAL+ LNFTP+NGKPIRIM+S+RDP++RKSGA NIFIKNLDK+IDNKALHDTFS FG IL
Sbjct: 80 RALELLNFTPVNGKPIRIMFSHRDPSLRKSGAANIFIKNLDKAIDNKALHDTFSAFGGIL 139
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVATDS GQS+GYGFVQF+ EESA+SAI+K+NGMLLNDKQVFVGPF+R+QER+ +
Sbjct: 140 SCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQERDLSGGV 199
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
++FNNVYVKNL E TT+D+LKK+FG +G I+S VMRD +GKSKCFGFVNF+ DDAA++
Sbjct: 200 SKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAKA 259
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALNGKK D+KEWYVG+AQKK ERE EL+ KFEQ K +K++G+NLY+KNLDD++ D
Sbjct: 260 VEALNGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNLDDAVDD 319
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KL+ELF+E+GTITSCKVM+DP G SRGSGFVAFST EEA++A+TEMN KMV SKPLYVA
Sbjct: 320 EKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLYVA 379
Query: 396 LAQRKEERRARLQ--FSQMRPPVGP----RMPMYPPVAPGLGQQL-FYGQGPP-IIPPQP 447
LAQRKEERR RLQ F+QMR PVGP +PMY P PGLG Q+ +YGQ P IP QP
Sbjct: 380 LAQRKEERRVRLQAAFAQMRTPVGPTVPTSLPMYHP-GPGLGPQMPYYGQHPSGPIPLQP 438
Query: 448 -GFGYQQQLV-PG--MRPNYF-VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML 502
FGY Q++ PG PNY P V Q Q +R+G QQ Q +M+
Sbjct: 439 AAFGYPPQIMRPGGAQIPNYIGYPNVSLSQGQQG---QRAGGRRGGAPQQQQQQSQQQMI 495
Query: 503 PRG--RIYRYPPGC-NIPD---VPVAGVPGGMLPGPYDIGGMPFRD---AAFSQPMQTGA 553
RG R +RY P N D P G+ G MLP P +IGGMP + QP+ A
Sbjct: 496 QRGGNRNFRYTPNVRNASDGTAPPPQGMMGVMLPVPLEIGGMPAANVDSGVPQQPLPISA 555
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
LASALA+A P+QQR +LGE LYPLVDQLEH+ A KVTGMLLEMDQTEVLHL+ESPEALKA
Sbjct: 556 LASALASAPPDQQRAMLGEQLYPLVDQLEHEFAGKVTGMLLEMDQTEVLHLIESPEALKA 615
Query: 614 KVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDN 647
KV EAMEVLR QA +PT+ + +LS++++
Sbjct: 616 KVNEAMEVLR---MAQAVPSAPTEELGNLSISNS 646
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/655 (59%), Positives = 476/655 (72%), Gaps = 55/655 (8%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDA-------RQFVSTSLYVGDLDLSVND 53
MAQ+QVQP SP + G QF STSLYVGDLD +V +
Sbjct: 1 MAQIQVQP----------SPGSAGAVPVPVPVSVPVSPAAPNQFFSTSLYVGDLDPNVTE 50
Query: 54 SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
QLYD+FNQ+ V+S+RVCRDL ++RSLGY YVNYN +A+RAL+ LNF+ +NGKPIRI
Sbjct: 51 GQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEMLNFSLVNGKPIRI 110
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S+RDP+IRKSG NIFIKNLDKSIDNKAL+DTF+ FGNILSCKVA DS GQSRGYGFV
Sbjct: 111 MFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFV 170
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
QF+ E++A+SAI ++NGMLL +KQVFVGPF+R+QER+ T +FNNVYVKNL + TT+D
Sbjct: 171 QFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGIAKFNNVYVKNLGDATTDD 230
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
DLK++FGEFG I+S VMRD +GKSKCFGFVNF++ DDAA +VE LNGKK DDKEWYVG+
Sbjct: 231 DLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGR 290
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK ERE EL+ +++Q KE +DK++G+NLY+KNLDD+I DDKL+ELF FGTI SCKV
Sbjct: 291 AQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKV 350
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR----ARLQF 409
MRDP G S+GSGFVAFST EEA++A+TEMNG+MV +KP+YVALAQ+++ERR A+ QF
Sbjct: 351 MRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKRDERRRFNAAQAQF 410
Query: 410 SQMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQP-GFGYQQQLVPGMRPN 462
+ R PVG +PM+ P A G+GQ +FYGQ PP PPQP GF YQQQ++ GMRP
Sbjct: 411 APFRVPVGLGPAVASSVPMFHPGA-GMGQPVFYGQHPPAFPPQPAGFAYQQQMMSGMRPG 469
Query: 463 ------YFVPMVQPGQQN------QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRY 510
Y +P+VQ Q +R G + QQ QQP LM ++ RGR +RY
Sbjct: 470 GPQLPFYSLPIVQRQPQPQQRPNARRGGAPQQQQQQQQQQQQPPQLMSQQVCCRGRNFRY 529
Query: 511 PPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTL 569
P N D GGMLP P + + P+ LASALA+ASP QR +
Sbjct: 530 TPTSRNSSDA------GGMLPVPLEAS-----ETGILPPINV--LASALASASPTDQRVM 576
Query: 570 LGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRN 624
LGE LYPLVD LEH+ A KVTGMLLEMDQTEVLHL+ESPEALKAKVAEAM+VLRN
Sbjct: 577 LGEQLYPLVDNLEHECAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLRN 631
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/662 (59%), Positives = 478/662 (72%), Gaps = 62/662 (9%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDA-------RQFVSTSLYVGDLDLSVND 53
MAQ+QVQP SP + G QF STSLYVGDLD +V +
Sbjct: 1 MAQIQVQP----------SPGSAGAVPVPVPVSVPVSPAAPNQFFSTSLYVGDLDPNVTE 50
Query: 54 SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
QLYD+FNQ+ V+S+RVCRDL ++RSLGY YVNYN +A+RAL+ LNF+ +NGKPIRI
Sbjct: 51 GQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEMLNFSLVNGKPIRI 110
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S+RDP+IRKSG NIFIKNLDKSIDNKAL+DTF+ FGNILSCKVA DS GQSRGYGFV
Sbjct: 111 MFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFV 170
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
QF+ E++A+SAI ++NGMLL +KQVFVGPF+R+QER+ T T+FNNVYVKNL + TT+D
Sbjct: 171 QFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGVTKFNNVYVKNLGDATTDD 230
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
DLK++FGEFG I+S VMRD +GKSKCFGFVNF++ DDAA +VE LNGKK DDKEWYVG+
Sbjct: 231 DLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGR 290
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK ERE EL+ +++Q KE +DK++G+NLY+KNLDD+I DDKL+ELF FGTI SCKV
Sbjct: 291 AQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKV 350
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR----ARLQF 409
MRDP G S+GSGFVAFST EEA++A+TEMNG+MV +KP+YVALAQ+++ERR A+ QF
Sbjct: 351 MRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKRDERRRFNAAQAQF 410
Query: 410 SQMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQP-GFGYQQQLVPGMRPN 462
+ R PVG +PM+ P A G+GQ +FYGQ PP PPQP GF YQQQ++ GMRP
Sbjct: 411 APFRVPVGLGPAVASSVPMFHPGA-GMGQPVFYGQHPPAFPPQPAGFAYQQQMMSGMRPG 469
Query: 463 ------YFVPMV-----QPGQQNQRPGG--------RRSGTGPMQQAQQPIPLMQPRMLP 503
Y +P+V + N R GG ++ QQ QQP LM ++
Sbjct: 470 GPQLPFYSLPIVQRQPQPQQRPNARRGGAPQQQQQQQQQQQQQQQQQQQPPQLMSQQVCC 529
Query: 504 RGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANAS 562
RGR +RY P N D GGMLP P + + P+ LASALA+AS
Sbjct: 530 RGRNFRYTPTSRNSSDA------GGMLPVPLEAS-----ETGILPPINV--LASALASAS 576
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
P QR +LGE LYPLVD LEH+ A KVTGMLLEMDQTEVLHL+ESPEALKAKVAEAM+VL
Sbjct: 577 PTDQRVMLGEQLYPLVDNLEHECAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVL 636
Query: 623 RN 624
RN
Sbjct: 637 RN 638
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/636 (60%), Positives = 471/636 (74%), Gaps = 42/636 (6%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+V+ SLYVGDLD V++S+LY++FNQ+GQVVS+RVCRDL T++SLGY YVNY +A++
Sbjct: 23 YVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQ 82
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFT + GKPIRIMYS+RDP+IRKSGA NIFIKNL+KSIDNKALHDTFS FG ILS
Sbjct: 83 ALELLNFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILS 142
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
C+V D G S+GYGFVQF+ EESA+ AI+K+NGML+ND+QV V PF+RKQER+ + K
Sbjct: 143 CRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQVSVAPFIRKQERDMASSKN 202
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
FNNVYVKNL+E TT++DL+K+F FG I+S VMRDADGKSKCFGFVNF++ DDAA +V
Sbjct: 203 -FNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAV 261
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK ++KEWYVG+AQKK ERE ELK KFEQ KE +KF+G+NLY+KN+DDSI D+
Sbjct: 262 ENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDE 321
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+ FGT+TSCKVM+ P G S GSGFV FS EEA +A+ +MNGKMV SKPLYVAL
Sbjct: 322 KLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVAL 381
Query: 397 AQRKEERRARL--QFSQMR-------PPVGPRMPMYPPVAPGLGQQLFYGQ-GPPIIPPQ 446
AQRKEERRARL QF+QM+ P MY P G+G Q+FYGQ P ++P Q
Sbjct: 382 AQRKEERRARLQAQFAQMQIVAPNAPPMAPNPPSMYHPGPQGMGHQMFYGQPAPGLLPSQ 441
Query: 447 P-GFGYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP 499
GFGYQQ +VP MR PNYF+P+ +PGQQ QRP RR G GP+Q P
Sbjct: 442 ANGFGYQQPMVPTMRPTSAGVPNYFMPVQRPGQQIQRPVNRRGGVGPLQPQHH---QPPP 498
Query: 500 RMLPRG--RIYRYPP-GCNIPDVPVAGVPGGML--PGPYDIGGMPFRDAAFSQPMQTGAL 554
+ PRG R RY +PD + G GM+ +IG MP AL
Sbjct: 499 QQFPRGGNRSMRYSQFSRTMPDSTMQGF--GMMGAANASNIGLMP-------------AL 543
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
ASALA+ASPE+QR +LGE LYPLVD+LEHD+A KVTGMLLEMDQ EVLHL++ LKAK
Sbjct: 544 ASALASASPEEQRVMLGEQLYPLVDRLEHDHAGKVTGMLLEMDQPEVLHLIDLLRQLKAK 603
Query: 615 VAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
VAEAM+VLR +AQ + SP D++ASLSL +++ S
Sbjct: 604 VAEAMDVLR-MAQGSISSNSPLDQLASLSLTESLTS 638
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/674 (57%), Positives = 485/674 (71%), Gaps = 50/674 (7%)
Query: 1 MAQVQVQPQA-PVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDL 59
MA P A VA AA P A G+A GG F + SLYVGDL+ +VN+ QLYDL
Sbjct: 1 MAAAISSPMAQSVAAAATPVIAP-GVALGGG-----PFANASLYVGDLEGNVNEEQLYDL 54
Query: 60 FNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119
F+Q+ Q+ S+RVCRD + R SLGY YVN+ A +A+ A++ LNFTPLNGKPIRIM+S RD
Sbjct: 55 FSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQRD 114
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179
P+IRKSG GN+FIKNLD SIDNKALHDTF+ FG +LSCKVA DS GQS+GYGFVQFDNEE
Sbjct: 115 PSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEE 174
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
+A++AI +LNGML+NDKQV+VG F+R+QERE T +F NVYVKNLSET T++DLKK+F
Sbjct: 175 AAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLF 234
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKY 298
G +G ITS VM+D +GKS+CFGFVNF +PD AA +VE LNG +D+ YVG+AQ+K
Sbjct: 235 GPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKA 294
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE ELK K EQ +K +G NLY+KNLDDS SD+KLK+LFSEFGTITSCKVM D N
Sbjct: 295 EREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSN 354
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPV 416
G S+GSGFV+FST EEASKAL EMNGK++ KPLYVA+AQRKEER+A L QF+Q+R P
Sbjct: 355 GRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQIRAPG 414
Query: 417 G-----PRMPMYPPVAPGLG-QQLFYGQGPP-IIPPQP-GFGYQQQLVPGMR----PNYF 464
G +P+Y P AP L QQL+YGQG P +PPQP GF +QQQ++PGMR PN+
Sbjct: 415 GMAPLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSFQQQILPGMRPGVAPNFI 474
Query: 465 VP--MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR--GRIYRY-PPGCN--IP 517
+P + + GQ QR G RR+G QQ Q Q +ML R + +RY P G N P
Sbjct: 475 MPYHLQRQGQLGQRTGVRRNGN--FQQVQ------QNQMLHRNSNQGFRYMPNGRNGMDP 526
Query: 518 DVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA----LASALANASPEQQRTLLGEN 573
+ G+ G M+P P+D G+ AA + + GA LASALA+A+PE QR +LGE+
Sbjct: 527 SLVPHGLMGPMMPMPFDGSGV---TAAPNDNQRPGALSTTLASALASATPENQRMMLGEH 583
Query: 574 LYPLVDQLE-HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
LYPLV++L + AKVTGMLLEMDQ+EV++L+ESPE LK KV+EAM+VL VA
Sbjct: 584 LYPLVERLAPNQYTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLHEVASG---- 639
Query: 633 PSPTDRVASLSLND 646
S D++ S+SLN+
Sbjct: 640 -SEVDQLGSMSLNE 652
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/635 (58%), Positives = 462/635 (72%), Gaps = 34/635 (5%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F + SLYVGDLD ++ + QLYDLF Q+ V+S+RVCRD + R SLGY YVN+ + +AT
Sbjct: 469 RFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDAT 528
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
AL+ LNFTPLNGKPIRIM+S+RDP+IRKSG N+FIKNLD SIDNKAL DTF+ FG +L
Sbjct: 529 NALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVL 588
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCK+A D+ GQS+GYGFVQF+ EE+A++AI +LNGML+NDKQV+VG F+R QER
Sbjct: 589 SCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGS 648
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+F NVYVKNLSETTT+DDLK IFG++G ITS VMRDA G SKCFGFVNF D AA +
Sbjct: 649 PKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAA 708
Query: 276 VEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
VE LNG F DDK WYVGKAQ+K ERE EL+ KFEQ K +KF+G NLY+KNLDDS++
Sbjct: 709 VEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVN 768
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+KLKELFSEFGTITSCKVM DP G+S+GSGFVAF T EEA++AL MNGKM+ KPLYV
Sbjct: 769 DEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYV 828
Query: 395 ALAQRKEERRARL--QFSQMRPPVGPRMPMYPPV------APGLG-QQLFYGQGPP-IIP 444
A+AQRKEER+ARL QF+Q+R P G P+ V AP L QQL++GQG P +IP
Sbjct: 829 AVAQRKEERKARLQAQFAQIRSP-GAMTPLQSGVPGFHSGAPRLAPQQLYFGQGTPGLIP 887
Query: 445 PQP-GFGYQQQLVPGMR----PNYFVP--MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
QP G+G+QQQL+PGMR PN+ +P + + GQ QR G RR G Q Q PL+
Sbjct: 888 TQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNS-QQMQHQQQPLL 946
Query: 498 QPRMLPRGRIYRYPP----GCNIPDVPVAGVPGGMLPGPYDIGGMPFR--DAAFSQPMQT 551
+ YRY G + VP G+ G ++P P+D+ GMP D + P+
Sbjct: 947 HRN---SNQSYRYMANGRNGVDPSMVP-QGLMGPVMPLPFDVSGMPVSPMDIQRTGPVPM 1002
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
LASALA+ +P+ QR +LGE L+PLV+++E + A KVTGMLLEMDQTEVLHL+ESP+AL
Sbjct: 1003 STLASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIESPDAL 1062
Query: 612 KAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
K KVAEAM+VLR ++G D++ SL LN+
Sbjct: 1063 KNKVAEAMDVLR----ASSSGNDVGDQLGSLMLNE 1093
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/637 (58%), Positives = 462/637 (72%), Gaps = 34/637 (5%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A F + SLYVGDLD ++ + QLYDLF Q+ V+S+RVCRD + R SLGY YVN+ + +
Sbjct: 7 AAGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQD 66
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
AT AL+ LNFTPLNGKPIRIM+S+RDP+IRKSG N+FIKNLD SIDNKAL DTF+ FG
Sbjct: 67 ATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGT 126
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
+LSCK+A D+ GQS+GYGFVQF+ EE+A++AI +LNGML+NDKQV+VG F+R QER
Sbjct: 127 VLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGN 186
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+F NVYVKNLSETTT+DDLK IFG++G ITS VMRDA G SKCFGFVNF D AA
Sbjct: 187 GSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAA 246
Query: 274 RSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+VE LNG F DDK WYVGKAQ+K ERE EL+ KFEQ K +KF+G NLY+KNLDDS
Sbjct: 247 AAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDS 306
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
++D+KLKELFSEFGTITSCKVM DP G+S+GSGFVAF T EEA++AL MNGKM+ KPL
Sbjct: 307 VNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPL 366
Query: 393 YVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPV------APGLG-QQLFYGQGPP-I 442
YVA+AQRKEER+ARL QF+Q+R P G P+ V AP L QQL++GQG P +
Sbjct: 367 YVAVAQRKEERKARLQAQFAQIRSP-GAMTPLQSGVPGFHSGAPRLAPQQLYFGQGTPGL 425
Query: 443 IPPQP-GFGYQQQLVPGMR----PNYFVP--MVQPGQQNQRPGGRRSGTGPMQQAQQPIP 495
IP QP G+G+QQQL+PGMR PN+ +P + + GQ QR G RR G Q Q P
Sbjct: 426 IPTQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNS-QQMQHQQQP 484
Query: 496 LMQPRMLPRGRIYRYPP----GCNIPDVPVAGVPGGMLPGPYDIGGMPFR--DAAFSQPM 549
L+ + YRY G + VP G+ G ++P P+D+ GMP D + P+
Sbjct: 485 LLHRN---SNQSYRYMANGRNGVDPSMVP-QGLMGPVMPLPFDVSGMPVSPMDIQRTGPV 540
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
LASALA+ +P+ QR +LGE L+PLV+++E + A KVTGMLLEMDQTEVLHL+ESP+
Sbjct: 541 PMSTLASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIESPD 600
Query: 610 ALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
ALK KVAEAM+VLR ++G D++ SL LN+
Sbjct: 601 ALKNKVAEAMDVLR----ASSSGNDVGDQLGSLMLNE 633
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/659 (56%), Positives = 460/659 (69%), Gaps = 59/659 (8%)
Query: 8 PQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
PQ+ VA Q S A G G F + SLYVGDLD ++ + QLYDLF Q+ V+
Sbjct: 13 PQSLSPVAVQQSTAMTGHTAAAG------FANASLYVGDLDTAIGEGQLYDLFQQVAPVL 66
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRD + R SLGY YVN+ + +AT AL+ LNFTPLNGKPIRIM+S+RDP+IRKSG
Sbjct: 67 SIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGF 126
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
N+FIKNLD SIDNKAL DTF+ FG +LSCK+A D+ GQS+GYGFVQF+ EE+A++AI +
Sbjct: 127 ANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKR 186
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LNGML+NDKQV+VG F+R QER +F NVYVKNLSETTT+DDLK IFG++G ITS
Sbjct: 187 LNGMLINDKQVYVGLFVRHQERNXGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITS 246
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKG 306
VMRDA G SKCFGFVNF D AA +VE LNG F DDK WYVGKAQ+K ERE EL+
Sbjct: 247 AVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRA 306
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
KFEQ K +KF+G NLY+KNLDDS++D+KL ELFSEFGTITSCKVM DP G+S+GSGF
Sbjct: 307 KFEQERKNKFEKFKGXNLYLKNLDDSVNDEKLXELFSEFGTITSCKVMLDPQGLSKGSGF 366
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYP 424
VAF T EEA++AL MNGKM+ KPLYVA+AQRKEER+ARL QF+Q+R P G P+
Sbjct: 367 VAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSP-GAMTPLQS 425
Query: 425 PV------APGLG-QQLFYGQGPP-IIPPQP-GFGYQQQLVPGMR----PNYFVP--MVQ 469
V AP L QQL++GQG P +IP QP G+G+QQQL+PGMR PN+ +P + +
Sbjct: 426 GVPGFHSGAPRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQR 485
Query: 470 PGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
GQ QR G RR G Q QQ P + P ++
Sbjct: 486 QGQPGQRMGVRRGGNSQQMQHQQ--------------------------QPASWGP--VM 517
Query: 530 PGPYDIGGMPFR--DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
P P+D+ GMP D + P+ LASALA+ +P+ QR +LGE L+PLV+++E + A
Sbjct: 518 PLPFDVSGMPVSPMDIQRTGPVPMSTLASALASTTPDNQRLMLGEQLFPLVERIERETAG 577
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
KVTGMLLEMDQTEVLHL+ESP+ALK KVAEAM+VLR ++G D++ SL LN+
Sbjct: 578 KVTGMLLEMDQTEVLHLIESPDALKNKVAEAMDVLR----ASSSGNDVGDQLGSLXLNE 632
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/484 (75%), Positives = 414/484 (85%), Gaps = 19/484 (3%)
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AIDKLNGML+NDKQV+VG FLRKQEREST T+F NVYVKNLSE+TT+D LKK+FG
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDGLKKVFG 60
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRDADGKSKCFGF+NF+ +DAA++VE+LNGKKFDDKEWYVGKAQKK ER
Sbjct: 61 EFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSER 120
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK KFEQ+ KE DK++GLNLYVKNLDD+I D+KLKELFSEFGTITSCKVMRDP+GI
Sbjct: 121 EQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGI 180
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR----- 413
SRGSGFVAFST+EEAS+AL+EMNGKM+VSKPLYVALAQRKEERRA+L QFSQ+R
Sbjct: 181 SRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQLRPVAMP 240
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVP 466
P + PRMP+YPP APG+GQQLFYGQGPP +IPPQ GFGYQQQLVPGMR PN+F+P
Sbjct: 241 PSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPNFFMP 300
Query: 467 MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPG 526
+VQ Q + G R G GP+QQ QQP+PLMQ +MLPRGR+YRYPPG N P+ P+ GVPG
Sbjct: 301 LVQ-QGQQGQRPGGRRGAGPVQQTQQPMPLMQQQMLPRGRMYRYPPGRNGPEGPMPGVPG 359
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
GML PYD+GGM RD+A QPM LASALANA PEQQRT+LGE+LYPLVDQLEH++A
Sbjct: 360 GMLSVPYDMGGMLPRDSAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHEHA 419
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV QQ T +P D++ASLSLND
Sbjct: 420 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV--QQTT--NPADQLASLSLND 475
Query: 647 NIVS 650
N+VS
Sbjct: 476 NLVS 479
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 130/234 (55%), Gaps = 18/234 (7%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTF 148
A A+D+LN +N K + + + R R+S G N+++KNL +S + L F
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQE-RESTTGMTKFQNVYVKNLSESTTDDGLKKVF 59
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FGNI S V D+ G+S+ +GF+ F+ E A A++ LNG +DK+ +VG +K E
Sbjct: 60 GEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSE 119
Query: 209 RE------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE DK + N+YVKNL +T ++ LK++F EFG ITS VMRD G
Sbjct: 120 REQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSG 179
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
S+ GFV F ++A+R++ +NGK K YV AQ+K ER +L+ +F Q
Sbjct: 180 ISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQ 233
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++YV +L S D L +F + G + S V RD + +S +G++N+ A +A +A++
Sbjct: 40 NVYVKNLSESTTDDGLKKVFGEFGNITSAVVMRD-ADGKSKCFGFINFETAEDAAKAVES 98
Query: 101 LNFTPLNGKPIRI----MYSYRDPTIR------------KSGAGNIFIKNLDKSIDNKAL 144
LN + K + S R+ ++ K N+++KNLD +ID++ L
Sbjct: 99 LNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKL 158
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
+ FS FG I SCKV D G SRG GFV F E A A+ ++NG ++ K ++V
Sbjct: 159 KELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQ 218
Query: 205 RKQERES 211
RK+ER +
Sbjct: 219 RKEERRA 225
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L +LF++ G + S +V RD S S G G+V ++ + EA+
Sbjct: 138 KYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSG-ISRGSGFVAFSTSEEAS 196
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RAL E+N + KP+ + + R
Sbjct: 197 RALSEMNGKMIVSKPLYVALAQR 219
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/652 (58%), Positives = 473/652 (72%), Gaps = 44/652 (6%)
Query: 1 MAQVQVQPQA-PVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDL 59
MA P A VA AA P A G+A GG F + SLYVGDL+ +VN+ QLYDL
Sbjct: 1 MAAAISSPMAQSVAAAATPVIAP-GVALGGG-----PFANASLYVGDLEGNVNEEQLYDL 54
Query: 60 FNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119
F+Q+ Q+ S+RVCRD + R SLGY YVN+ A +A+ A++ LNFTPLNGKPIRIM+S RD
Sbjct: 55 FSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQRD 114
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179
P+IRKSG GN+FIKNLD SIDNKALHDTF+ FG +LSCKVA DS GQS+GYGFVQFDNEE
Sbjct: 115 PSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEE 174
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
+A++AI +LNGML+NDKQV+VG F+R+QERE T +F NVYVKNLSET T++DLKK+F
Sbjct: 175 AAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLF 234
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKY 298
G +G ITS VM+D +GKS+CFGFVNF +PD AA +VE LNG +D+ YVG+AQ+K
Sbjct: 235 GPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKA 294
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE ELK K EQ +K +G NLY+KNLDDS SD+KLK+LFSEFGTITSCKVM D N
Sbjct: 295 EREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSN 354
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPV 416
G S+GSGFV+FST EEASKAL EMNGK++ KPLYVA+AQRKEER+A L QF+Q+R P
Sbjct: 355 GRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQIRAPG 414
Query: 417 G-----PRMPMYPPVAPGLG-QQLFYGQGPP-IIPPQP-GFGYQQQLVPGMR----PNYF 464
G +P+Y P AP L QQL+YGQG P +PPQP GF +QQQ++PGMR PN+
Sbjct: 415 GMAPLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSFQQQILPGMRPGVAPNFI 474
Query: 465 VP--MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR--GRIYRY-PPGCN--IP 517
+P + + GQ QR G RR+G Q Q +ML R + +RY P G N P
Sbjct: 475 MPYHLQRQGQLGQRTGVRRNGNFQQVQQNQ-------QMLHRNSNQGFRYMPNGRNGMDP 527
Query: 518 DVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA----LASALANASPEQQRTLLGEN 573
+ G+ G M+P P+D G+ AA + + GA LASALA+A+PE QR +LGE+
Sbjct: 528 SLVPHGLMGPMMPMPFDGSGV---TAAPNDNQRPGALSTTLASALASATPENQRMMLGEH 584
Query: 574 LYPLVDQLE-HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRN 624
LYPLV++L + AKVTGMLLEMDQ+EV++L+ESPE LK KV+EAM+VL++
Sbjct: 585 LYPLVERLAPNQYTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLQS 636
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/634 (57%), Positives = 459/634 (72%), Gaps = 24/634 (3%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G +A QF ++SLYVGDL+ +VN+ QL+DLF+Q+ QVVS+RVCRD + R SLGY YVN++
Sbjct: 23 GTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFS 82
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+A+ A++ LNFTPLNGK IRIM S+RDP++RKSG N+FIKNLD SIDNKAL +TF+
Sbjct: 83 NPQDASNAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFA 142
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
+FG++LSCKVA D+ GQS+GYGFVQF+NEE+A+SAI++LNGML+NDK+VFVG F+R QER
Sbjct: 143 SFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 202
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+F NVYVKNLSETT+++DLKK F +G ITS VM+D GKSK FGFVNF P
Sbjct: 203 IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSP 262
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
D AA +VE LNG F+DK WYVG+AQ+K ERE ELK +FEQ +K + NLY+KNL
Sbjct: 263 DSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNL 322
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DD I D+KLKELFSEFG+ITSCKVM D G+S+GSGFVAFST EEAS+AL MNGKM+
Sbjct: 323 DDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGK 382
Query: 390 KPLYVALAQRKEERRARLQ--FSQMRPP-VGPR---MPMYPPVAPGLG-QQLFYGQGPP- 441
KPLYVA+AQR+EER+ARLQ F+Q++ P + P +P Y P AP L QQLF+GQG
Sbjct: 383 KPLYVAVAQRREERKARLQAHFTQIQAPGLSPMPSGLPGYHPGAPRLAPQQLFFGQGTAG 442
Query: 442 IIPPQP-GFGYQQQLVPGMR----PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL 496
++PPQP G+G+QQQL+PGMR PN+ +P Q Q G QQ QQ L
Sbjct: 443 MMPPQPAGYGFQQQLLPGMRAGVGPNFVMPYQMQRQGQQGQRMGIRRGGNHQQIQQQQQL 502
Query: 497 MQPRMLPRGRIY--RYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPF--RDAAFSQPMQTG 552
+ R +G Y G + P G G ++P P++ GMP DA + P+
Sbjct: 503 LH-RNTNQGLRYMGNARNGIDSSAAP-QGFVGPVVPFPFEASGMPVTPSDAQRTAPVPIS 560
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
AL +ALA+A+PE++ +LGE LYPLV++LE D AKVTGMLLEMDQTEVLHL+ESP+ALK
Sbjct: 561 ALTTALASATPEKRMVMLGEQLYPLVERLEPDQVAKVTGMLLEMDQTEVLHLIESPDALK 620
Query: 613 AKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
KVAEAM+VL Q+ S D++ SL+LN+
Sbjct: 621 KKVAEAMQVL-----QEVGASSVGDQLGSLALNE 649
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/628 (57%), Positives = 455/628 (72%), Gaps = 28/628 (4%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QF + SLYVGDL+ +VN+ QLYDLF+Q+ QVVSVRVCRD + R SLGYGYVN++ +A
Sbjct: 41 QFANLSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAA 100
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+ LNFTPLNGKPIRIM+S+RDP+IRKSG GN+FIKNLD ++DNK LH+TF+ FG +L
Sbjct: 101 NAMKALNFTPLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVL 160
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA DS GQS+GYGFVQF+NEESA+ AI L+GM LNDKQV+VG F+R+QER T
Sbjct: 161 SCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGS 220
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+F NVYVKNLSET T +DL+K+FG +G ITS VM+D GKS+ FGFVNF DPD AA +
Sbjct: 221 PKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAA 280
Query: 276 VEALNGKK-FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
VE LNG DDK WYVG+AQ+K ERE ELK KFEQ ++ + NLY+KNLDD+I+
Sbjct: 281 VEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNIN 340
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D KLKELFSEFG+ITSCKVM D G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLYV
Sbjct: 341 DVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYV 400
Query: 395 ALAQRKEERRARLQ--FSQMRPP--VGPR---MPMYPPVAPGLG-QQLFYGQGPP-IIPP 445
A+AQRKEER+ARLQ F+ +R P + P +P Y AP L QQL++GQG P ++PP
Sbjct: 401 AIAQRKEERKARLQAHFALVRAPGALAPLPSGIPGYNAGAPRLAPQQLYFGQGTPGMMPP 460
Query: 446 Q-PGFGYQQQLVPGMR----PNYFVP--MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
Q G+G+QQQ++ MR PN+ +P + + GQ QR G RR G P Q QQ L +
Sbjct: 461 QHAGYGFQQQILTSMRPAVGPNFIIPYHLQRQGQPGQRMGMRRGGN-PQQMQQQQQLLHR 519
Query: 499 PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASAL 558
+ N VP G+ G M+P P+++ G P+ LASAL
Sbjct: 520 NNNQGLRYVGNARNSGNSSVVP-QGLAGPMVPLPFEVSGA---SVDVQPPVTISTLASAL 575
Query: 559 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
A+A+PE++ +LG++LYPLV++L+ D+ AKVTGMLLEMDQTEVLHL+ESP++LK KVAEA
Sbjct: 576 ASATPEKRTEMLGDHLYPLVERLQPDHVAKVTGMLLEMDQTEVLHLIESPDSLKKKVAEA 635
Query: 619 MEVLRNVAQQQATGPSPTDRVASLSLND 646
M+VLR +AT + D++ SL LN+
Sbjct: 636 MQVLR-----EATA-NVGDQLGSLVLNE 657
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/475 (70%), Positives = 395/475 (83%), Gaps = 13/475 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q +TSLYVGDLD V DSQLYDLFNQ+GQVVSVR+CRDL++++SLGYGYVN++ H+A
Sbjct: 20 QLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAA 79
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+A+D LNFTPLN KPIRIMYS+RDP++RKSGA NIFIKNLD++ID+KAL+DTFS FGNIL
Sbjct: 80 KAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNIL 139
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCK+A D+ G S+GYGFVQF+NEESA+SAIDKLNGMLLNDK V+VG F RKQ+R++
Sbjct: 140 SCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSN 199
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+FNNVYVKNLSE+ T+DDLK FGE+G ITS VMRD DGKSKCFGFVNF++ D AA +
Sbjct: 200 AKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEA 259
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALNGKKFDDKEWYVGKA KKYERE+ELK + EQS+KET DKF G NLY+KNLDDS++D
Sbjct: 260 VEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTD 319
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KL ELFSEFGT+TSCK++RDP GISRGSGFVAFST EEA++AL EMNGKMV KPLYVA
Sbjct: 320 EKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Query: 396 LAQRKEERRARL--QFSQMRP----PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF 449
AQ+KEER+ARL QFSQ+RP P+ PR+P YP PG+GQQ+ YGQ PP Q GF
Sbjct: 380 PAQKKEERKARLPAQFSQVRPVTMAPIAPRLPFYPAGVPGMGQQIMYGQAPPAFISQAGF 439
Query: 450 GYQQQLVPGMR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
GY QQLVPGMR PN+F+PMVQ GQQ QRPGGRR + PMQQ +P+MQ
Sbjct: 440 GYPQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRGAS-PMQQLPHSLPMMQ 493
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 166/293 (56%), Gaps = 17/293 (5%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
R+ + ++++ +LD +++ LYD F+ G ++S ++ D S S GYG+V +
Sbjct: 106 VRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASG-LSKGYGFVQFENEES 164
Query: 94 ATRALDELNFTPLNGKPIRIMY----SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
A A+D+LN LN KP+ + + RD + + N+++KNL +S+ + L +TF
Sbjct: 165 AQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFG 224
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
+G I S V D G+S+ +GFV F+N ++A A++ LNG +DK+ +VG L+K ER
Sbjct: 225 EYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYER 284
Query: 210 E------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
E T DK N+Y+KNL ++ T++ L ++F EFG +TS ++RD G
Sbjct: 285 ELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGI 344
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
S+ GFV F P++A R++ +NGK K YV AQKK ER+ L +F Q
Sbjct: 345 SRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLPAQFSQ 397
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/635 (56%), Positives = 451/635 (71%), Gaps = 52/635 (8%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G +A QF ++SLYVGDL+ +VN+ QL+DLF+Q+ QVVS+RVCRD + R SLGY YVN++
Sbjct: 13 GTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFS 72
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+A A++ LNFTPLNGK IRIM S+RDP++RKSG N+FIKNLD SIDNKAL +TF+
Sbjct: 73 NPQDAANAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFA 132
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
+FG +LSCKVA D+ GQS+GYGFVQF+NEE+A+SAI++LNGML+NDK+VFVG F+R QER
Sbjct: 133 SFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 192
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+F NVYVKNLSETT+++DLKK F +G ITS VM+D GKSK FGFVNF P
Sbjct: 193 IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSP 252
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
D AA +VE LNG F+DK WYVG+AQ+K ERE ELK +FEQ +K + NLY+KNL
Sbjct: 253 DSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNL 312
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DD I D+KLKELFSEFG+ITSCKVM D G+S+GSGFVAFST EEAS+AL MNGKM+
Sbjct: 313 DDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGK 372
Query: 390 KPLYVALAQRKEERRARLQ--FSQMRPP-VGPR---MPMYPPVAPGLG-QQLFYGQGPP- 441
KPLYVA+AQR+EER+ARLQ F+Q++ P + P +P Y P AP L QQLF+GQG
Sbjct: 373 KPLYVAVAQRREERKARLQAHFTQIQAPGLSPMPSGLPGYHPGAPRLAPQQLFFGQGTAG 432
Query: 442 IIPPQP-GFGYQQQLVPGMR----PNYFVPMVQPGQQNQ------RPGGRRSGTGPMQQA 490
++PPQP G+G+QQQL+PGMR PN+ +P Q Q R GG QQ
Sbjct: 433 MMPPQPAGYGFQQQLLPGMRAGVGPNFVMPYQMQRQGQQGQRMGIRRGGNHQQIQQQQQV 492
Query: 491 QQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQ 550
+ + Q R+PP + +G+P + P DA + P+
Sbjct: 493 HYRLNVFQ----------RFPP------LTASGMP--VTPS----------DAQRTAPVP 524
Query: 551 TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEA 610
AL +ALA+A+PE++ +LGE LYPLV++LE D+ AKVTGMLLEMDQTEVLHL+ESP+A
Sbjct: 525 ISALTTALASATPEKRMVMLGEQLYPLVERLEPDHVAKVTGMLLEMDQTEVLHLIESPDA 584
Query: 611 LKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLN 645
LK KVAEAM+VL Q+ S D++ SL+LN
Sbjct: 585 LKKKVAEAMQVL-----QEVGASSVGDQLGSLALN 614
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/634 (54%), Positives = 446/634 (70%), Gaps = 37/634 (5%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QF + SLYVGDL+ +V + QL+DLF+Q+ VVS RVCRD + SLGY YVN++ +A
Sbjct: 29 QFPNRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAA 88
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+A++ LNFTPLNGKPIRIM+S+RDPT R+SG N+FIKNLD IDNKAL++TF++FG +L
Sbjct: 89 KAMEVLNFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVL 148
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA D+ GQS+GYGF+QF+NEE A+SAI++LNGML+ND++V+VGPF+R+ ER
Sbjct: 149 SCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLERIEANGS 208
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+F NVYVKNLSETT+++DLKKIF +G ITS VM+D +GKS+ FGFVNF PD AA +
Sbjct: 209 PKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAA 268
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LNG F DK WYVG+AQ+K ERE ELK KFEQ +K + NLY+KNL D+I +
Sbjct: 269 VEKLNGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDE 328
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++LKELFSEFG+ITSCKVM D G+S+GSGFVAFST EEAS+AL+EMNGKM+ KPLYVA
Sbjct: 329 ERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVA 388
Query: 396 LAQRKEERRARLQ--FSQMRPPVGPRMPM----YPPVAPGLG-QQLFYGQGPP-IIPPQP 447
+AQR+EER ARLQ FSQ++ P P +P Y P P L QL++GQG P ++PPQP
Sbjct: 389 IAQRREERMARLQAHFSQIQAPGLPTLPSGLPGYHPGTPRLAPHQLYFGQGTPGMMPPQP 448
Query: 448 -GFGYQQQLVPGMR----PNYFVP------MVQPGQQNQRPGGRRSGTGPMQQAQQPIPL 496
G+ +Q QL+PGMR PN+ +P Q + RPGG Q
Sbjct: 449 AGYSFQPQLLPGMRAAVGPNFVMPYQLQRQGQQGQRMGMRPGG--------NHQQMQQQQ 500
Query: 497 MQPRMLPRGRIY--RYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPF--RDAAFSQPMQTG 552
+ R +G Y G + VP G G ++P P++ GMP A + P+
Sbjct: 501 LLHRNTNQGVRYVGNARNGIDSSVVP-QGFVGPVMPLPFEASGMPITPSHAQPTTPVPIS 559
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
L +ALA+A+PE + +LGE LYPLV+ LE D+ AKVTGMLLEMDQTEVLHL+ESP+ALK
Sbjct: 560 TLTTALASATPENRMMMLGEQLYPLVECLEPDHVAKVTGMLLEMDQTEVLHLIESPDALK 619
Query: 613 AKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 646
KVAEAM+VL Q+A S D+ SL+LN+
Sbjct: 620 KKVAEAMQVL-----QEAGASSVGDQPGSLALNE 648
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/617 (55%), Positives = 432/617 (70%), Gaps = 64/617 (10%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F ST+LYVGDLD SVN++Q++D+F Q+G V+SVR+CRD+ T+RSLGY YVNYN +A+R
Sbjct: 12 FASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASR 71
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A++ELNF P+NGKP+RIM+SYRDP+IRKSG+GN+F+KNLDKSIDNKALHD FS +G ILS
Sbjct: 72 AIEELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILS 131
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+A D S+G+GFVQFD E++A +AI+K+NG L+DKQ+FVGPF+R+QER+ A K
Sbjct: 132 CKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERDPPASK- 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
FNNV+VKNLSE TT++DL+K+FG FG I+S VM++ DGKSKCFGFVNF++P+DA ++V
Sbjct: 191 -FNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E L+G F DKE YV +AQKK ERE ELK KFE K+T DK NLY+KNLDD I D+
Sbjct: 250 EDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDK-SPTNLYLKNLDDGIDDE 308
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLK++FS FG +TSCKVMRDP G S+GSGFVAFST++ A +A+ +MNGKM+ SKPLYVA+
Sbjct: 309 KLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAM 368
Query: 397 AQRKEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQP-GFGYQQ 453
AQ+KEER+A+L QF+ P P P+Y V GQQL Y + P++P QP GF +
Sbjct: 369 AQKKEERKAKLEAQFASRGPVNFPPPPLYSAV----GQQLLYSRPAPMVPQQPAGFAMVR 424
Query: 454 QLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPG 513
V G P +F P Q G P QQ MQ G R P
Sbjct: 425 PNV-GQMPGFFPPQRQQGH----------ARVPFQQ------FMQRESTFHGSNSRTP-- 465
Query: 514 CNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGEN 573
A+ LAS LA+A+PEQQR +LGE
Sbjct: 466 ------------------------------AYGNNSFLAVLASHLASATPEQQRIMLGEQ 495
Query: 574 LYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGP 633
LYPLVD +EH++A K+TGMLLEMDQTEVLHLLESPEAL KV+EAMEVLR+ +QQ+ P
Sbjct: 496 LYPLVDCIEHNHAGKITGMLLEMDQTEVLHLLESPEALNLKVSEAMEVLRD-SQQRLIPP 554
Query: 634 SPTDRVASLSLNDNIVS 650
+ASLSL+D ++S
Sbjct: 555 D----LASLSLDDPLMS 567
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 162/290 (55%), Gaps = 20/290 (6%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ S +L+V +LD S+++ L+DLF+ G+++S ++ D+S S G+G+V ++ A
Sbjct: 98 RKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILSCKIALDVSN-VSKGHGFVQFDTEDAA 156
Query: 95 TRALDELNFTPLNGKPI----RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A++++N T L+ K + + RDP K N+F+KNL + ++ L F
Sbjct: 157 HTAIEKINGTTLHDKQLFVGPFVRRQERDPPASK--FNNVFVKNLSEITTDEDLQKLFGV 214
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG I S V + G+S+ +GFV F+N E A A++ L+G DK+++V +K ERE
Sbjct: 215 FGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQKKNERE 274
Query: 211 S------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
+ T DK+ N+Y+KNL + ++ LK +F FG +TS VMRD G S
Sbjct: 275 AELKAKFEHERKDTEDKSP-TNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHS 333
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K GFV F D A R+V +NGK K YV AQKK ER+ +L+ +F
Sbjct: 334 KGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAMAQKKEERKAKLEAQF 383
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/648 (56%), Positives = 458/648 (70%), Gaps = 41/648 (6%)
Query: 20 PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
P T +A GG F+S+SLYVGDLD SVN+ QL +LF Q+ QVVS+RVCRD + R+
Sbjct: 21 PPTVAVATGGG------FLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQ 74
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
SLGY YVN+++ +A A++ LNFTP+NGKPIRIM S RDP+IRKSG N+FIKNLD SI
Sbjct: 75 SLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSI 134
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
DNKAL DTF+ FG +LSCKVA DS GQS+GYGFVQF++EESA+ +I+KLNGMLLNDKQV+
Sbjct: 135 DNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVY 194
Query: 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
VG F+R QER A+ ++F NVYVKNL ETTT+DDLK +F G ITS VM D++GKSK
Sbjct: 195 VGHFIRHQER-IRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSK 253
Query: 260 CFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
CFGFVNF + D AA +VE L+G DDK YVG+AQ+K ERE ELK KFEQ K +K
Sbjct: 254 CFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEK 313
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378
+G NLY+KNLDD I D+KLKELFSE+GTITSCKVM D +G+S+GSGFVAFS+ +EA+KA
Sbjct: 314 LQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKA 373
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGPR-----MPMYPPVAPGLG 431
L EMNGKM KPLYVA+AQRKEER+ARL QF+Q+R G +P + P A +
Sbjct: 374 LNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVS 433
Query: 432 -QQLFYGQGPP-IIPPQP-GFGYQQQLVPGMR----PNYFVP--MVQPGQQNQRPGGRRS 482
QQ++YGQG P + PPQP G+G+Q QL+ GMR PN+ +P + GQ R G RR
Sbjct: 434 PQQMYYGQGNPGLAPPQPAGYGFQPQLMSGMRPGMGPNFLMPYQFQRQGQPGPRLGVRRG 493
Query: 483 GTGPMQQAQQPIPLMQPRMLPRGRIYRY----PPGCNIPDVPVAGVPGGMLPGPYDIGGM 538
G Q + G+ +RY G P +P G+ M+P +D G+
Sbjct: 494 GNSQPLPQ------QQLPLRGYGQSFRYMNNARNGLETPVLP-QGLVSPMMPLAFDGSGV 546
Query: 539 --PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEM 596
P D S+ + T LASALA+AS E QR +LGE LYPLV++LE +AAKVTGMLLEM
Sbjct: 547 SSPPNDIQRSRAVPTSTLASALASASLENQRVMLGEQLYPLVERLEPSHAAKVTGMLLEM 606
Query: 597 DQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSL 644
DQ EVLHL+ESP+ LK+KVAEAMEVLR + + P +D++ +L+L
Sbjct: 607 DQPEVLHLIESPDDLKSKVAEAMEVLRKASSE----PELSDQLGALTL 650
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/648 (56%), Positives = 458/648 (70%), Gaps = 41/648 (6%)
Query: 20 PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
P T +A GG F+S+SLYVGDLD SVN+ QL +LF Q+ QVVS+RVCRD + R+
Sbjct: 21 PPTVAVATGGG------FLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQ 74
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
SLGY YVN+++ +A A++ LNFTP+NGKPIRIM S RDP+IRKSG N+FIKNLD SI
Sbjct: 75 SLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSI 134
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
DNKAL DTF+ FG +LSCKVA DS GQS+GYGFVQF++EESA+ +I+KLNGMLLNDKQV+
Sbjct: 135 DNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVY 194
Query: 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
VG F+R QER A+ ++F NVYVKNL ETTT+DDLK +F G ITS VM D++GKSK
Sbjct: 195 VGHFIRHQER-IRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSK 253
Query: 260 CFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
CFGFVNF + D AA +VE L+G DDK YVG+AQ+K ERE EL+ KFEQ K +K
Sbjct: 254 CFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEK 313
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378
+G NLY+KNLDD I D+KLKELFSE+GTITSCKVM D +G+S+GSGFVAFS+ +EA+KA
Sbjct: 314 LQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKA 373
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVG-----PRMPMYPPVAPGLG 431
L EMNGKM KPLYVA+AQRKEER+ARL QF+Q+R G +P + P A +
Sbjct: 374 LNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVS 433
Query: 432 -QQLFYGQGPP-IIPPQP-GFGYQQQLVPGMR----PNYFVP--MVQPGQQNQRPGGRRS 482
QQ++YGQG P + PPQP G+G+Q QL+ GMR PN+ +P + GQ R G RR
Sbjct: 434 PQQMYYGQGNPGLAPPQPAGYGFQPQLMSGMRPGMGPNFLMPYQFQRQGQPGPRSGVRRG 493
Query: 483 GTGPMQQAQQPIPLMQPRMLPRGRIYRY----PPGCNIPDVPVAGVPGGMLPGPYDIGGM 538
G Q + G+ +RY G P +P G+ M+P +D G+
Sbjct: 494 GNSQPLPQ------QQLPLRGYGQSFRYMNNARNGLESPVLP-QGLVSPMMPLAFDGSGV 546
Query: 539 --PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEM 596
P D S+ + T LASALA+AS E QR +LGE LYPLV++LE +AAKVTGMLLEM
Sbjct: 547 SSPPNDIQRSRAVPTSTLASALASASLENQRVMLGEQLYPLVERLEPSHAAKVTGMLLEM 606
Query: 597 DQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSL 644
DQ EVLHL+ESP+ LK+KVAEAMEVLR + + P +D++ +L+L
Sbjct: 607 DQPEVLHLIESPDDLKSKVAEAMEVLRKASSE----PELSDQLGALTL 650
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 310/421 (73%), Positives = 366/421 (86%), Gaps = 9/421 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVN+++ +A R
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP+ RKSGA NIFIKNLDKSIDNKAL+DTFS FGNILS
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILS 155
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVAT+ G+S+GYGFVQF+ EE+A++AI KLNGMLLNDK+V+VGPF+RKQERE+ +
Sbjct: 156 CKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNP 215
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNLSE+TTED+LK+IFG+FG ITS VMR+ DGKS+CFGFVNF++PDDAAR+V
Sbjct: 216 KFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAV 275
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGKKFDDKEWYV +AQKK EREMELK KFE+++KE ADK +G NLY+KNLDDSI DD
Sbjct: 276 EDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 337 -KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KLKE+F++FGTITSCKVMRD NG+S+GSGFVAF +AE+AS+AL MNGKM+ SKPLYVA
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
Query: 396 LAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQP 447
LAQRKEERRARL QFSQMR P V PRMPMYPP PG+GQQLFYGQ PP + PQ
Sbjct: 396 LAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVNPQL 455
Query: 448 G 448
G
Sbjct: 456 G 456
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 333/501 (66%), Positives = 400/501 (79%), Gaps = 23/501 (4%)
Query: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDN 177
RDP+ R+SG+ NIFIKNLDK+IDNK LHDTFS FG ILSCKVA D +GQS+G+GFVQ++
Sbjct: 1 RDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEK 60
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
EESA+SA+ LNGML+NDK V+VGPFLRKQER+++ DK +FNNV+VKNLSE+TT+DDL K
Sbjct: 61 EESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVK 120
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
+F +G ITS VM DGKS+CF FVNF+ PDDAAR+VE LNGKK +DKEWYVG+AQKK
Sbjct: 121 VFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKK 180
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
EREM+LK +FEQS+K+ ADK++G NLY+KNLDD I+DD+L+ELFS FG ITSCK+MRD
Sbjct: 181 SEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQ 240
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR-- 413
NG+S+GSGFV+FST EEAS+ALTEMNGKM+ KPLYVA AQRKE+R+A L QFSQMR
Sbjct: 241 NGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPV 300
Query: 414 ---PPVGPRMPMYPPVAPGLGQQLFYG-QGPPIIPPQPGFGYQQQLVPGMR-------PN 462
P + PR+PMYPP+ P LGQQLFYG P ++PPQPG+G+QQQLVPGMR PN
Sbjct: 301 PMTPSMTPRLPMYPPM-PTLGQQLFYGQAPPAMMPPQPGYGFQQQLVPGMRPGGGAHMPN 359
Query: 463 YFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC-NIPDV-- 519
YFVP+VQPGQQ RPG RR+G G Q Q Q +M+PRG +YRYPPG ++P+V
Sbjct: 360 YFVPVVQPGQQGPRPGIRRNGPGSAQGQQT-PQPFQQQMVPRGCVYRYPPGPRHMPEVQQ 418
Query: 520 -PVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV 578
P GV GGM+ PYD+G P RDA S G L SALANA+PEQQRT+LGE+LYPLV
Sbjct: 419 MPGVGV-GGMVQ-PYDMGSFPVRDAGVSPAPPIGTLTSALANATPEQQRTILGESLYPLV 476
Query: 579 DQLEHDNAAKVTGMLLEMDQT 599
++LEH AAKVTGMLLEMDQT
Sbjct: 477 EKLEHQQAAKVTGMLLEMDQT 497
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 164/293 (55%), Gaps = 17/293 (5%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
+R+ S ++++ +LD ++++ L+D F+ G ++S +V D +S G+G+V Y
Sbjct: 5 SRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMD-DIGQSKGFGFVQYEKEES 63
Query: 94 ATRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
A A+ LN +N KP+ + RD + K+ N+F+KNL +S L FS
Sbjct: 64 AQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFS 123
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
+G I S V G+SR + FV F++ + A A+++LNG +NDK+ +VG +K ER
Sbjct: 124 GYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSER 183
Query: 210 E------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
E ADK + N+Y+KNL + T+D L+++F FG ITS +MRD +G
Sbjct: 184 EMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGV 243
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
SK GFV+F ++A++++ +NGK K YV AQ+K +R+ L+ +F Q
Sbjct: 244 SKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQ 296
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 294/413 (71%), Positives = 360/413 (87%), Gaps = 7/413 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QFVSTSLYVGDL+ +V+++QLY++F+Q+GQVVS+RVCRDL TRRSLGY YVNYN A +AT
Sbjct: 20 QFVSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDAT 79
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RAL+ LNFT +NGKPIRIM+S+RDP+IRKSG NIFIKNLDKSIDNKALHDTF+ FGNIL
Sbjct: 80 RALELLNFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGNIL 139
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVATD+ GQS+GYGFVQF+ EESA++AI+K+NGMLLNDKQVFVGPF+R+QER+
Sbjct: 140 SCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERDQAGGV 199
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
++FNNVYVKNL++ TT+D+LKK+FG +G I+S VMRD DGKSKCFGFVNF+ PDDAA++
Sbjct: 200 SKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKA 259
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEAL GKKFD+KEWYVG+AQKK ERE EL+ KFEQ KE +K++G+NLY+KNLDD++ D
Sbjct: 260 VEALQGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDD 319
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+K++ELF+E+GTITSCKVMRD G S+GSGFVAFS+ +EA++A+TEMNGKMV +KPLYVA
Sbjct: 320 EKIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLYVA 379
Query: 396 LAQRKEERRARLQ--FSQMRPPVGP----RMPMYPPVAPGLGQQL-FYGQGPP 441
LAQRKEERR RLQ F+QMR VGP +PMY P APG+G Q+ +YGQ PP
Sbjct: 380 LAQRKEERRMRLQAAFAQMRTHVGPAVPTSLPMYHPGAPGMGPQMSYYGQHPP 432
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 287/409 (70%), Positives = 349/409 (85%), Gaps = 8/409 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVGDL+ +V DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVNY+ +A RA+
Sbjct: 121 TTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAM 180
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LNF PLN KPIR+MYS RDP+ R+SG+ NIFIKNLDK+IDNK LHDTFS FG ILSCK
Sbjct: 181 EALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCK 240
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D +GQS+G+GFVQ++ EESA+SA+ LNGML+NDK V+VGPFLRKQER++++DK +F
Sbjct: 241 VAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKF 300
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNV+VKNLSE+TT++DL K+F E+G ITS VM DGKS+CFGFVNF+ PDDAAR+VE
Sbjct: 301 NNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEE 360
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNGKK +DKEWYVG+AQKK EREM+LK +FEQS+K+ ADK++G NLY+KNLDD I+DD+L
Sbjct: 361 LNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQL 420
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ELFS FG ITSCK+MRD NG+S+GSGFV+FST EEAS+ALTEMNGKM+ KPLYVA AQ
Sbjct: 421 RELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQ 480
Query: 399 RKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGP 440
RKEER+A L QFSQMR P + PR+PMYPP+ P LGQQLFYGQ P
Sbjct: 481 RKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYPPM-PTLGQQLFYGQAP 528
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 335/640 (52%), Positives = 423/640 (66%), Gaps = 60/640 (9%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVGDL+ +V+++QL+ LF ++G + S+RVCRD T RSLGY YVN+ +A A+
Sbjct: 5 NASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRD-ETNRSLGYAYVNFVNPQDAANAM 63
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LNFTPLNGK IR+M+S RDP+IRKSG N+FIKNLD SIDNK LHDTF+ FG +LS K
Sbjct: 64 EHLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGFVLSSK 123
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA DS+GQS+GYGFVQFDNEESA++AI +LNGML+NDK+V+VG F+ +QER +F
Sbjct: 124 VAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGSPKF 183
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN SET T++DL+++F +G ITS VM+D DGKS+CFGFVNF+ PD A +VE
Sbjct: 184 TNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVER 243
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNG DDK YVG+AQ+K ERE ELK +FE +K+ G NLYVKNLD +I+DDK
Sbjct: 244 LNGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNINDDK 303
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKELFSEFGTITSCKVM +PNG S+G GFVAFS A++AL EMNGKM+ +PLYVA+A
Sbjct: 304 LKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYVAVA 363
Query: 398 QRKEERRARL--QFSQMRP-------PVGPRMPMYPPVAPGLG-QQLFYGQGPP-IIPPQ 446
QRKEER+A L QFSQM P G +P+Y P AP G Q L YGQG P ++ PQ
Sbjct: 364 QRKEERKALLEAQFSQMHALYAITHLPTG--IPVYHPGAPRHGPQALHYGQGAPSLVAPQ 421
Query: 447 P-GFGYQQQLVPGMRPNYFVPMVQP-GQQNQRPGGRRS-------------GTGPMQQAQ 491
P G+G+QQQL+PGM P + P +Q Q P R+ G G M Q
Sbjct: 422 PTGYGFQQQLLPGMHPGVAPNFIMPYHRQRQVPPRLRNLHRNQMLHLNSSQGFGYMGNGQ 481
Query: 492 QPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQP--M 549
M P ++P G+ M+P P+D G+ P
Sbjct: 482 NG---MDPSVVPH------------------GIVAPMMPLPFDGSGISAAPTYNQHPGGS 520
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQL--EHDNAAKVTGMLLEMDQTEVLHLLES 607
+ ASALA+A+PE Q +L E+LYPLVD++ H KVTGMLLEMDQ+EV+HL ES
Sbjct: 521 LSNTFASALASATPENQHLMLAEHLYPLVDEITKNHHQTEKVTGMLLEMDQSEVIHLTES 580
Query: 608 PEALKAKVAEAMEVLRNVA-QQQATGPSPTDRVASLSLND 646
PE LK KV EAM+ L A + G D++ S+SL +
Sbjct: 581 PEDLKIKVFEAMQALGEAAPDSEEVG----DQLGSVSLKE 616
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ T+LYV +LD ++ND +L +LF++ G + S +V + RS GYG+V ++A A
Sbjct: 284 KYHGTNLYVKNLDYNINDDKLKELFSEFGTITSCKVMLE-PNGRSKGYGFVAFSAPRNAN 342
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RAL E+N + +P+ + + R
Sbjct: 343 RALHEMNGKMIGRRPLYVAVAQR 365
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 337/614 (54%), Positives = 426/614 (69%), Gaps = 35/614 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SV++ QL DLFNQ+ V +VRVCRDL TRRSLGY YVN+ +A+RA+
Sbjct: 57 NSSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDL-TRRSLGYAYVNFANPEDASRAM 115
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS FG ILSCK
Sbjct: 116 DSLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCK 175
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-- 216
VA D++G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R +
Sbjct: 176 VAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVP 235
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
RF NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF+ P+ AA +V
Sbjct: 236 RFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAV 295
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E +NG + YVG+AQKK ERE EL+ KFEQ +K +G NLY+KNLDDS++D+
Sbjct: 296 EKMNGISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDE 355
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE+FSE+G +TSCKVM + G+SRG GFVA+S+ EEAS+AL+EMNGKM+ KPLYVA
Sbjct: 356 KLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAF 415
Query: 397 AQRKEERRARLQ--FSQMR-----PPVGPRMP---MYPPVAPGLGQQ---LFYGQ-GPPI 442
AQRKEERRA LQ F+ +R P+ MP +PP P G ++ GQ G +
Sbjct: 416 AQRKEERRAHLQTLFTHIRSPGTMSPIPSPMPGFHHHPPGGPMSGPHHPTMYIGQNGQGL 475
Query: 443 IPPQP-GFGYQQQLVPGMRP-----NYFVPMVQPGQQNQRPGGR---RSGTGPMQQAQQP 493
+PPQP G+GYQ Q +PG+RP NY +P P Q+ +PG R R G MQQ Q
Sbjct: 476 VPPQPMGYGYQVQFMPGVRPGAGPANYMMPF--PLQRQTQPGPRVGFRRGANNMQQHFQQ 533
Query: 494 IPLMQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQ--PMQ 550
++Q P RY G N + A P G++P P + + P+
Sbjct: 534 QQILQQNASPG---MRYMGGAGNRRNGMEASAPQGIIPLPLNASAISHNAPQHPHKPPLL 590
Query: 551 T-GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
T LAS LA A PE+ +LGENLYPLV Q E + AAKVTGMLLEMDQ E+LHLLESPE
Sbjct: 591 TISKLASDLALAPPEKHPQMLGENLYPLVAQQEPEYAAKVTGMLLEMDQAEILHLLESPE 650
Query: 610 ALKAKVAEAMEVLR 623
ALKAKV+EA++VLR
Sbjct: 651 ALKAKVSEALDVLR 664
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 337/640 (52%), Positives = 428/640 (66%), Gaps = 40/640 (6%)
Query: 5 QVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
Q Q PV++ A PSPA V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 24 QTSVQVPVSIPA-PSPA--------AVAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHVA 73
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 74 NVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFERPIRIMLSNRDPSTRL 132
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
IDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+SR
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGLSR 372
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPPVGPRM 420
G GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA LQ FSQ+R P GP
Sbjct: 373 GFGFVAYSNPEEALRALSEMNGKMIGKKPLYIALAQRKEDRRAHLQALFSQIRAP-GPMS 431
Query: 421 PMY---PPVAPGLGQQLFYGQ-GPPIIPPQP-GFGYQQQLVPGMRP-----NYFV--PMV 468
+ G Q ++ GQ G ++P QP G+G+Q Q +PGMRP N+ + P+
Sbjct: 432 GFHHPPGGPMSGPPQHMYVGQNGASLVPSQPIGYGFQPQFMPGMRPGSGPGNFVMPYPLQ 491
Query: 469 QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGG 527
+ Q R G RR T MQ Q LM P RY G N + + VP G
Sbjct: 492 RQPQTGPRMGFRRGATN-MQHHIQQQQLMNRNPTPG---MRYMNGAGNGRNGMDSSVPQG 547
Query: 528 MLPG----PYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEH 583
+LP P D + + A + L S+LA+ASP + +LGE LYPLV++ E
Sbjct: 548 ILPPIMPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEP 604
Query: 584 DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 605 LHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 419/619 (67%), Gaps = 33/619 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SVN+S L DLFNQ+ V ++RVCRDL T RSLGY YVN+ +A+RA+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS+FG ILSCK
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-- 216
VA D +G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R +
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF P+ AA +V
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E +NG + YVG+AQKK +RE EL+ KFEQ +K +G NLY+KNLDDS++D+
Sbjct: 297 EKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDE 356
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE+FSE+G +TSCKVM + G+SRG GFVA+S EEA A+ EMNGKM+ KPLYVAL
Sbjct: 357 KLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Query: 397 AQRKEERRARLQ--FSQMRPPVGPRMPM---------YPPVAP--GLGQQLFYGQ-GPPI 442
AQRKEER+A LQ F+Q+R P G P+ +PP P G +F G G +
Sbjct: 417 AQRKEERQAHLQSLFTQIRSP-GTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGL 475
Query: 443 IPPQP-GFGYQQQLVPGMR-----PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL 496
+P QP G+GYQ Q +PGMR PN+ +P P Q+ +PG R G + A
Sbjct: 476 VPSQPMGYGYQVQFMPGMRPGAGPPNFMMPF--PLQRQTQPGPR---VGFRRGANNMQQQ 530
Query: 497 MQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQ---PMQTG 552
Q + + + R+ G N + A P G++P P + S P+
Sbjct: 531 FQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTIS 590
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
LAS LA ASP++ +LG++LYPLV+Q E NAAKVTGMLLEMDQ E+LHLLESPEALK
Sbjct: 591 KLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALK 650
Query: 613 AKVAEAMEVLRNVAQQQAT 631
AKV+EA++VLR A A
Sbjct: 651 AKVSEALDVLRRSADPAAV 669
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 419/619 (67%), Gaps = 33/619 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SVN+S L DLFNQ+ V ++RVCRDL T RSLGY YVN+ +A+RA+
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 102
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS+FG ILSCK
Sbjct: 103 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 162
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-- 216
VA D +G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R +
Sbjct: 163 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 222
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF P+ AA +V
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E +NG + YVG+AQKK +RE EL+ KFEQ +K +G NLY+KNLDDS++D+
Sbjct: 283 EKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDE 342
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE+FSE+G +TSCKVM + G+SRG GFVA+S EEA A+ EMNGKM+ KPLYVAL
Sbjct: 343 KLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 402
Query: 397 AQRKEERRARLQ--FSQMRPPVGPRMPM---------YPPVAP--GLGQQLFYGQ-GPPI 442
AQRKEER+A LQ F+Q+R P G P+ +PP P G +F G G +
Sbjct: 403 AQRKEERQAHLQSLFTQIRSP-GTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGL 461
Query: 443 IPPQP-GFGYQQQLVPGMR-----PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL 496
+P QP G+GYQ Q +PGMR PN+ +P P Q+ +PG R G + A
Sbjct: 462 VPSQPMGYGYQVQFMPGMRPGAGPPNFMMPF--PLQRQTQPGPR---VGFRRGANNMQQQ 516
Query: 497 MQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQ---PMQTG 552
Q + + + R+ G N + A P G++P P + S P+
Sbjct: 517 FQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTIS 576
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
LAS LA ASP++ +LG++LYPLV+Q E NAAKVTGMLLEMDQ E+LHLLESPEALK
Sbjct: 577 KLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALK 636
Query: 613 AKVAEAMEVLRNVAQQQAT 631
AKV+EA++VLR A A
Sbjct: 637 AKVSEALDVLRRSADPAAV 655
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 325/619 (52%), Positives = 418/619 (67%), Gaps = 33/619 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SVN+S L DLFNQ+ V ++RVCRDL T RSLGY YVN+ +A+RA+
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 102
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS+FG ILSCK
Sbjct: 103 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 162
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-- 216
VA D +G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R +
Sbjct: 163 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 222
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF P+ AA +V
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E +NG + YVG+AQKK +RE EL+ KFEQ +K +G NLY+KNLDDS++D+
Sbjct: 283 EKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDE 342
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE+FSE+G +TSCKVM + G+SRG GFVA+S EEA A+ EMNGKM+ KPLYVAL
Sbjct: 343 KLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 402
Query: 397 AQRKEERRARLQ--FSQMRPPVGPRMPM---------YPPVAP--GLGQQLFYGQ-GPPI 442
AQRKEER+A LQ F+Q+R P G P+ +PP P G +F G G +
Sbjct: 403 AQRKEERQAHLQSLFTQIRSP-GTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGL 461
Query: 443 IPPQP-GFGYQQQLVPGMR-----PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL 496
+P QP G+GYQ Q +PGMR PN+ +P P Q+ +PG R G + A
Sbjct: 462 VPSQPMGYGYQVQFMPGMRPGAGPPNFMMPF--PLQRQTQPGPR---VGFRRGANNMQQQ 516
Query: 497 MQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQ---PMQTG 552
Q + + + R+ G N + A P G++P P + S P+
Sbjct: 517 FQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTIS 576
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
LAS LA ASP++ +LG++LYPLV+Q E N AKVTGMLLEMDQ E+LHLLESPEALK
Sbjct: 577 KLASDLALASPDKHPRMLGDHLYPLVEQQEPANPAKVTGMLLEMDQAEILHLLESPEALK 636
Query: 613 AKVAEAMEVLRNVAQQQAT 631
AKV+EA++VLR A A
Sbjct: 637 AKVSEALDVLRRSADPAAV 655
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 337/638 (52%), Positives = 426/638 (66%), Gaps = 36/638 (5%)
Query: 5 QVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
Q Q PV++ PSP V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 24 QTSVQVPVSIPL-PSPVV--------VAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHVA 73
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 74 NVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL 132
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
IDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+SR
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR 372
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPPVGPRM 420
G GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA LQ FSQ+R P GP
Sbjct: 373 GFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAP-GPMS 431
Query: 421 PMY---PPVAPGLGQQLFYGQ-GPPIIPPQP-GFGYQQQLVPGMRP-----NYFVPMV-- 468
+ PG Q ++ GQ G ++P QP G+G+Q Q +PGMRP N+ VP
Sbjct: 432 GFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVPYSLQ 491
Query: 469 -QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYR-YPPGCNIPDVPV-AGVP 525
QP Q R G RR T +QQ Q LM P R G N D V G+
Sbjct: 492 RQP-QTGPRMGFRRGATN-VQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGIL 549
Query: 526 GGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDN 585
++P P D + + A + L S+LA+ASP + +LGE LYPLV++ E +
Sbjct: 550 PPIIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLH 606
Query: 586 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 607 VAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 335/637 (52%), Positives = 426/637 (66%), Gaps = 34/637 (5%)
Query: 5 QVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
Q Q PV++ PSP V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 24 QTSVQVPVSIPL-PSPVV--------VAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHVA 73
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 74 NVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL 132
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
IDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+SR
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR 372
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPPVGPRM 420
G GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA LQ FSQ+R P GP
Sbjct: 373 GFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAP-GPMS 431
Query: 421 PMY---PPVAPGLGQQLFYGQ-GPPIIPPQP-GFGYQQQLVPGMRP-----NYFV--PMV 468
+ PG Q ++ GQ G ++P QP G+G+Q Q +PGMRP N+ V P+
Sbjct: 432 GFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVPYPLQ 491
Query: 469 QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYR-YPPGCNIPDVPV-AGVPG 526
+ Q R G RR T +QQ Q LM P R G N D V G+
Sbjct: 492 RQPQTGPRMGFRRGATN-VQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILP 550
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
++P P D + + A + L S+LA+ASP + +LGE LYPLV++ E +
Sbjct: 551 PIIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHV 607
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 608 AKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/414 (67%), Positives = 340/414 (82%), Gaps = 9/414 (2%)
Query: 2 AQVQVQPQA-PVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
AQV V P P AV A SP G VG A+ +TSLYVGDL+ +V+DSQLY+LF
Sbjct: 3 AQVAVVPNGGPGAVPAVVSP--------GAVGVAQPLPTTSLYVGDLEGAVSDSQLYELF 54
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
+Q GQVVSVRVCRD+++RRSLGY YVNY+ +A RAL+ LNF LN KPIR+MYS RDP
Sbjct: 55 SQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEVLNFAALNNKPIRVMYSNRDP 114
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+ R+SG+ NIFIKNLDK+IDNK LH+TFS+FG ILSCKVA D GQS+G+GFVQ+D EE+
Sbjct: 115 SSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEA 174
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AI LNGML+NDK VFVGPF+RKQER+ + DKT+FNNV+VKNLSE+TT++DL KIFG
Sbjct: 175 AQNAIKSLNGMLINDKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFG 234
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS VM DGKS+CFGF+NF++PD A+ +V+ LNGKK +DKEWYVG+AQKK ER
Sbjct: 235 EYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVGRAQKKSER 294
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
EMELK +FEQSLK+ ADK++GLNLY+KNLDDSI DD+L ELFS FG ITS KVMRD NG+
Sbjct: 295 EMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGL 354
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRP 414
S+GSGFVAFST EEAS+ALTEMNGKM+ KPLYVA AQRKE+R+A LQ + ++P
Sbjct: 355 SKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQVTVLKP 408
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 573 bits (1477), Expect = e-160, Method: Compositional matrix adjust.
Identities = 329/622 (52%), Positives = 428/622 (68%), Gaps = 32/622 (5%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A +F ++SLYVGDL +VND+QLYDLF+Q+ V+SVRVCRD T+ SLGYGYVNY+ A +
Sbjct: 19 AGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARD 78
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A A++ LN+ PLNGKPIRIM+S+RDP IRK+G N+FIKNL+ SIDNKALH+TFS FGN
Sbjct: 79 AANAMENLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGN 138
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
+LSCKVA DS G S+G+GFVQFDN++SAK+AI+KL+G L+NDK+V+VG F+R QER S
Sbjct: 139 VLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSS-- 196
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+F NVYVKNLSE+ T +DLK++F FG+ITS +M+D +G SK FGFVNF D AA
Sbjct: 197 --PKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAA 254
Query: 274 RSVEALNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+VE LNG +D K +VG+AQKK ERE ELK FEQ + +KF+G NLY+KN+D S
Sbjct: 255 TAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKS 314
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
++++KLKELFSEFGTITSCKVM D G S+G GFVAF+T EEASKA+ EMNGK++ KP+
Sbjct: 315 LNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPV 374
Query: 393 YVALAQRKEERRARLQFSQMRPPV---GPRMPMYPPVAPGLGQQLFYGQGP-PIIPPQP- 447
YV++AQRKEER+A+LQ P + G + V QQ +Y QG ++ PQP
Sbjct: 375 YVSVAQRKEERKAQLQ--AHFPAIQVSGGNAGYHSSVQRLAPQQFYYEQGTFDLMAPQPN 432
Query: 448 GFGYQQQLV----PG-MRPNYFVP--MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPR 500
G+G++ + + PG + PNY +P + + G R GGR +G QQ +Q M PR
Sbjct: 433 GYGFRPKFMSDVGPGFVTPNYLLPYHLQRQGHPGNRMGGRPAGN--FQQVRQKKNQMLPR 490
Query: 501 MLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALAN 560
+G Y G V ++ PG L P + P+ +LASALA+
Sbjct: 491 NPNQGLKYNGQNG-----VGMSVDPGSQLMDPSASAATSTGNHHHG-PLSNNSLASALAS 544
Query: 561 ASPEQQRTLLGENLYPLVDQLEHD-NAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
AS E Q +L E+L+PLV +L AKVT MLLEMDQ+EV+HL+ESPE LK KVAEAM
Sbjct: 545 ASQENQHRMLEEHLHPLVGRLAPTIQTAKVTRMLLEMDQSEVIHLIESPEELKMKVAEAM 604
Query: 620 EVLRNVAQQQATGPSPTDRVAS 641
LR+ +Q GP+ D++ S
Sbjct: 605 RFLRDASQ----GPAVGDKIGS 622
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAE 373
+A +FE +LYV +L +++D +L +LFS+ + S +V RD S G G+V +S A
Sbjct: 18 SAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNAR 77
Query: 374 EASKALTEMNGKMVVSKPLYVALAQR 399
+A+ A+ +N + KP+ + + R
Sbjct: 78 DAANAMENLNYVPLNGKPIRIMFSHR 103
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 332/635 (52%), Positives = 423/635 (66%), Gaps = 35/635 (5%)
Query: 5 QVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
Q Q PV++ PSP V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 24 QTSVQVPVSIPL-PSPVV--------VAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHVA 73
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 74 NVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL 132
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
IDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+SR
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR 372
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPM 422
G GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA L Q+R P GP
Sbjct: 373 GFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL---QIRAP-GPMSGF 428
Query: 423 Y---PPVAPGLGQQLFYGQ-GPPIIPPQP-GFGYQQQLVPGMRP-----NYFV--PMVQP 470
+ PG Q ++ GQ G ++P QP G+G+Q Q +PGMRP N+ V P+ +
Sbjct: 429 HHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVPYPLQRQ 488
Query: 471 GQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYR-YPPGCNIPDVPV-AGVPGGM 528
Q R G RR T +QQ Q LM P R G N D V G+ +
Sbjct: 489 PQTGPRMGFRRGATN-VQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPPI 547
Query: 529 LPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAK 588
+P P D + + A + L S+LA+ASP + +LGE LYPLV++ E + AK
Sbjct: 548 IPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAK 604
Query: 589 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
VTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 605 VTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 639
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 320/411 (77%), Positives = 358/411 (87%), Gaps = 18/411 (4%)
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
MRD DGKS+CFGFVNF++ DDAA++ EALNGKKFDDKEW+VGKAQKKYERE+ELK +FEQ
Sbjct: 1 MRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQ 60
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
S+KE ADKF+G NLY+KNLDDSI D+K+KELFS FGTITSCKVMRDPNGISRGSGFVAFS
Sbjct: 61 SMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFS 120
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRP----PVGPRMPMYP 424
T EEAS+AL EMNGKMV SKPLYVALAQRKE+RRARL QFSQMRP P RMPMYP
Sbjct: 121 TPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVGRMPMYP 180
Query: 425 PVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQRP 477
P PGLGQQ+FYGQGPP I+PPQPGFGYQQQLVPGMR PN+FVPMVQ GQQ QRP
Sbjct: 181 PTGPGLGQQIFYGQGPPAIMPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRP 240
Query: 478 GGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
GGRR+GTG QQ+QQP+ LMQ +MLPRGR+YRYPPG +PDVP+ GV GGML PYD+GG
Sbjct: 241 GGRRAGTG--QQSQQPVQLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLSVPYDMGG 298
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
MP RDAA SQP+ GALA+ALANA+P+QQRT+LGENLYPLV+QLE + AAKVTGMLLEMD
Sbjct: 299 MPMRDAALSQPIPIGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMD 358
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNI 648
QTEVLHLLESPEALK+KV EAMEVLR V QQQATG + D++ASLSLNDN+
Sbjct: 359 QTEVLHLLESPEALKSKVNEAMEVLRTV-QQQATGTA--DQLASLSLNDNL 406
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 94/161 (58%), Gaps = 12/161 (7%)
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE----------- 210
D G+SR +GFV F+N + A A + LNG +DK+ FVG +K ERE
Sbjct: 3 DGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSM 62
Query: 211 -STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
ADK + N+Y+KNL ++ ++ +K++F FG ITS VMRD +G S+ GFV F P
Sbjct: 63 KEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTP 122
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
++A+R++ +NGK K YV AQ+K +R L+ +F Q
Sbjct: 123 EEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQ 163
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 112 RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYG 171
R S ++ + GA N++IKNLD SI ++ + + FS FG I SCKV D G SRG G
Sbjct: 57 RFEQSMKEAADKFQGA-NLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSG 115
Query: 172 FVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
FV F E A A+ ++NG ++ K ++V RK++R +
Sbjct: 116 FVAFSTPEEASRALLEMNGKMVASKPLYVALAQRKEDRRA 155
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A +F +LY+ +LD S+ D ++ +LF+ G + S +V RD S G G+V ++ E
Sbjct: 66 ADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRD-PNGISRGSGFVAFSTPEE 124
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A+RAL E+N + KP+ + + R
Sbjct: 125 ASRALLEMNGKMVASKPLYVALAQR 149
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 309/645 (47%), Positives = 408/645 (63%), Gaps = 53/645 (8%)
Query: 1 MAQVQVQPQAPVAVAAQP----SPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQL 56
MA P++ +A AA P +PA + G +SLYVGDL SV+++QL
Sbjct: 1 MASPSTTPRSTIAAAAVPVAEGTPAAAAVLPPLGS-------ISSLYVGDLAESVDETQL 53
Query: 57 YDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116
+ +F+Q+ +VSVRVCRD+ + SLGYGYVN+ + EAT AL+ LNF PL+GK IR+M+S
Sbjct: 54 HAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALEALNFAPLSGKHIRVMFS 113
Query: 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFD 176
RDP++RKSG N+F+KNL+ SID+K L++ FS+FG ILSCKVATDS GQS+GYGFVQ++
Sbjct: 114 NRDPSLRKSGRANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVATDSAGQSKGYGFVQYE 173
Query: 177 NEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLK 236
EESA+ AI++LNGML ND+++FVG +R++ RE +F NVY+KNL ++DDL+
Sbjct: 174 TEESAQDAINRLNGMLANDREMFVGLHMRRRNRE-----VKFTNVYIKNLPTEFSDDDLR 228
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
+ F FG ITS VMRD +G SKCFGFVNF+ P+ A +V+ NGK +DK YVG+AQK
Sbjct: 229 QEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQK 288
Query: 297 KYEREMELKGKFEQSLKE-TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMR 355
K ER+ ELK KF+Q ++ DK G+NLY+KN+DDSI+D+ LK LF EFG +TSCKVM
Sbjct: 289 KAERQAELKTKFKQEDRDKKVDKPNGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVMV 348
Query: 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR 413
D G S+GSGFV F+TAE A+ MNG++V KPLYV LAQ KEERRA L F+Q
Sbjct: 349 DAQGRSKGSGFVLFATAEAGHSAINGMNGRIVGKKPLYVGLAQPKEERRAMLMAHFAQRN 408
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQ-GPPIIPPQPG-FGYQQQLVPGMRPNYFVPMVQPG 471
M P P QQ+++G P IPPQ FG+ Q VP M P V M
Sbjct: 409 LA----MAASPYAGP---QQVYFGHPAPGQIPPQAAVFGFPQHFVPAMGPVSPVMMPHNM 461
Query: 472 QQNQRPGGRRSGTGPMQQAQQPIPL---MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGM 528
Q+++ P R G +Q Q I R +P R YP M
Sbjct: 462 QRSRYPRQRTGGPAAYRQQQAMIHANANHNIRYMPNARHGAYP---------------AM 506
Query: 529 LPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAK 588
LP F A SQ ++ +A+A+A P Q+ +LG LY LV+QLEHD+A K
Sbjct: 507 LP-------QGFPSAMVSQQHDGSSITTAVASAEPADQQQILGNKLYALVEQLEHDHAGK 559
Query: 589 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGP 633
VTGMLLEMD+ ++L LL+SPE L+AKV EAM+VL+ + + P
Sbjct: 560 VTGMLLEMDKVKILQLLQSPEVLRAKVREAMDVLQRTKAEGSADP 604
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/629 (48%), Positives = 397/629 (63%), Gaps = 48/629 (7%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MA P AP+A P A +G SLYVGDL +V++ QL+ LF
Sbjct: 1 MASPSTTPSAPIAAEVVPVAEGTPAAVLPPLGSM-----ASLYVGDLAETVDEPQLHALF 55
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
+Q+ V +VRVCRD+ + SLGYGYVN+ + EATRAL+ LNFTPL GK IR+M+S RDP
Sbjct: 56 SQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEALNFTPLIGKYIRVMFSNRDP 115
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG N+F+KNL+ +ID+K L++ FS+FG ILSCKVATDS GQS+GYGFVQ++ EES
Sbjct: 116 SLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEES 175
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AI+ LNGML N++++FVG +R+++RE +F NVY+KNL +EDDL++ F
Sbjct: 176 AEAAINGLNGMLANNRKMFVGLHMRRRDRE-----VKFTNVYIKNLPTEFSEDDLRQEFA 230
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
FG ITS VMRDADG SKCFGFVNF P+ A +VE NGK DK YVG+AQKK ER
Sbjct: 231 PFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEER 290
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
+ ELK +F + DK G+NLY+KN+DD I+D+ LK+LF EFG + SCKVM D G
Sbjct: 291 KAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGR 350
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGP 418
S+GSGFV+F+TAE +A+ MNG++V KPLYV LAQ KEER+A L F+Q +
Sbjct: 351 SKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQRNLAMAA 410
Query: 419 RMPMYPPVAPGLGQQLFYGQGP---PIIPPQPG-FGYQQQLVPGMRPNYFVPMVQPGQQN 474
P QQ+++G PI PPQ FG+ Q VPGM P P++ P
Sbjct: 411 SQYAGP-------QQVYFGHPSSPGPIAPPQGAVFGFPQHFVPGMGP--ISPVMMPPHNM 461
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
QRP R G P +Q QQ + +P R PG P +P PG
Sbjct: 462 QRP--RYPGPAPYRQ-QQAMIHANANHMPNAR-----PG------PYPAMPPQAFPG--- 504
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
G ++ A S+ +A+A+A P Q +LG LY LV+QLE D+A KVTGMLL
Sbjct: 505 AGATAWQQHAVSR------TTTAVASAGPADQHQILGNKLYALVEQLERDHAGKVTGMLL 558
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
EMD+ E+L LL SPEAL+AKV EAM VL+
Sbjct: 559 EMDKAEILQLLRSPEALRAKVREAMAVLQ 587
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/612 (47%), Positives = 391/612 (63%), Gaps = 38/612 (6%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDLD +V ++QL+ +F+QMG V SVRVCRD TRRSLGYGYVNY++ +A RA++
Sbjct: 37 VSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAME 96
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN+TP+NGK IRIM+S+RDP+ RKSG GNIFIKNLD+SIDNKALHDTF FG ILSCK+
Sbjct: 97 ALNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKI 156
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A G+S+GYGFV F+ +E+A AI+K+NGM L K+VFV F+++ +R + +T+F
Sbjct: 157 AHQD-GRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFT 215
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NV+VKNL E+++ + F FG+IT+ +M+D + KSK FGFVNFDDP+ A +VE +
Sbjct: 216 NVFVKNLDPEMAEEEINEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETM 275
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + YVG+AQKK ERE L+ +FE+ E K++G NLYVKNLDDSI D+ LK
Sbjct: 276 NNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLK 335
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS +G ITS KVMRD GIS+G GFV F++ EEAS+A TE NG M+ KP+YVA+AQR
Sbjct: 336 QEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQR 395
Query: 400 KEER------RARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIPPQP---GF 449
KE R + + S + PP G ++ YPPV +Y P ++P P G
Sbjct: 396 KEIRQAQLQQQYAQRMSGLMPPPGAQVAAAYPPV--------YYAAPPALLPQVPQRQGL 447
Query: 450 GYQQQLVPGMRPNYFVPMVQPGQQNQRPGG--RRSGTGPMQQAQQPIPLMQPRMLPRGRI 507
YQ + PG R P +P Q P R P+ + + +MQ R PR +
Sbjct: 448 MYQPVMRPGWRTGPLAPPGRPSLQPLPPYALVRNKKGVPLSISSYIVGVMQQR--PR-QA 504
Query: 508 YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQR 567
+Y D AG P M+PG + PM + S ++ ASP+QQ+
Sbjct: 505 MKYVNNGRPRDGAAAGGPVLMVPG--------------NMPMGGNDVLSMMSAASPQQQK 550
Query: 568 TLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 627
LLGE L+PLV + D A K+TGMLLEMD +E+L LLE+PEAL +KV EA++VL+ ++
Sbjct: 551 QLLGERLFPLVRTHQFDLAGKITGMLLEMDNSELLVLLETPEALASKVDEAVQVLQQHSK 610
Query: 628 QQATGPSPTDRV 639
SP V
Sbjct: 611 ASTVPSSPLAEV 622
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/428 (61%), Positives = 325/428 (75%), Gaps = 13/428 (3%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLY GDLD S ++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVN+ ++A RA+
Sbjct: 31 ATSLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAI 90
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D LNF +NGKPIRIMYS RDP +RKSG GNIFIKNLDK IDNKAL+DTF+ FGNI+S K
Sbjct: 91 DALNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFGNIVSAK 150
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VATD GQS+GYGFVQFD EE A+SAI+K+NGMLLNDKQV+VGPF ++ ER T F
Sbjct: 151 VATDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNER--GGGPTTF 208
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNVYVKNL E+ TE+ L+++F +FG +TS VM+DA+GKSK FGFV ++D + A +SVE
Sbjct: 209 NNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEE 268
Query: 279 LNG-KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+G K +DK W V +AQKK ERE ELK KF+ +E +K G NLY+KNL+D++ D K
Sbjct: 269 LDGYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAK 328
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ELF+EFGTITSC+VMRD G SRGS FVAFS+A+EA++A+TEMNGKM KPLYVALA
Sbjct: 329 LRELFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVALA 388
Query: 398 QRKEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPII----PPQPGFGY 451
QRKE+RR RL QF+Q + G M P P G ++YGQ PP + PQPG+G+
Sbjct: 389 QRKEDRRLRLQAQFAQRQVAAGGMPNMGPYGMPPPGAPMYYGQPPPGVMGPPQPQPGYGF 448
Query: 452 QQQLVPGM 459
Q PGM
Sbjct: 449 Q----PGM 452
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 295/637 (46%), Positives = 392/637 (61%), Gaps = 60/637 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDLD +V ++QL+ +F+QMG V SVRVCRD TRRSLGYGYVNY++ +A RA++
Sbjct: 38 VSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAME 97
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN+TP+NGK IRIM+S+RDP+ RKSG GNIFIKNLD+SIDNKALHDTF FG ILSCK+
Sbjct: 98 ALNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKI 157
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A G+S+GYGFV F+ +E+A AI+K+NGM L K+VFV F+++ +R + +T+F
Sbjct: 158 AHQD-GRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFT 216
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NV+VKNL E+++K+ F FG+IT+ +M+D + KSK FGFVNFDDP+ A +VE +
Sbjct: 217 NVFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETM 276
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + YVG+AQKK ERE L+ +FE+ E K++G NLYVKNLDDSI D+ LK
Sbjct: 277 NNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLK 336
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS +G ITS KVMRD GIS+G GFV F++ EEAS+A TE NG M+ KP+YVA+AQR
Sbjct: 337 QEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQR 396
Query: 400 KEER------RARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIPPQP---GF 449
KE R + + S + PP G ++ YPPV +Y P ++P P G
Sbjct: 397 KEIRQAQLQQQYAQRMSGLMPPPGAQVAAAYPPV--------YYAAPPALLPQVPQRQGL 448
Query: 450 GYQQQLVPGMRPNYFVPMVQPGQQ-------------------NQRPGGRRSGTGPMQQA 490
YQ + PG R P +P Q N+ PGG+ P Q
Sbjct: 449 MYQPVMRPGWRTGPLAPPGRPSLQPLPPYALVPNAQRQQRQVRNRPPGGQPLAQIPQLQI 508
Query: 491 QQPIPLMQPRMLPRGR--------IYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRD 542
QP + GR +Y D AG P M+PG
Sbjct: 509 PQPQAIQPGGYKENGRNQQQRPRQAMKYVNNGRPRDGAAAGGPVLMVPG----------- 557
Query: 543 AAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVL 602
+ PM + S ++ ASP+QQ+ LLGE L+PLV + D A K+TGMLLEMD +E+L
Sbjct: 558 ---NMPMGGNDVLSMMSAASPQQQKQLLGERLFPLVRTHQFDLAGKITGMLLEMDNSELL 614
Query: 603 HLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRV 639
LLE+PEAL +KV EA++VL+ ++ SP V
Sbjct: 615 VLLETPEALASKVDEAVQVLQQHSKASTVPSSPLAEV 651
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/614 (47%), Positives = 391/614 (63%), Gaps = 67/614 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALD 99
SLYVGDL+ SV + QL LF+Q+ V S VCRD++ R+SLGYGYVN+ + +ATRA++
Sbjct: 85 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 144
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNFT +NGKPIR+M+S RDPT+RKSG N+FIKNL+ +IDNK+L++ FS+FG ILS KV
Sbjct: 145 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 204
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATD G+S+GYGF+QF++E SAK AI+ LNGML N +++FVG F+R+QERE T D F
Sbjct: 205 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 264
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL + +++DL F FG ITS VMRDA+G S+CFGFVNF+ + A +V+ L
Sbjct: 265 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 324
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGK D YV +AQKK ER+ ELK KFE + +K + +NLY+KNLDD I+D+ L+
Sbjct: 325 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 384
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+LF FG + SCKVM D +G S+G GFV+F+T E+A+ A+ +MNGKMV KPLYVA+AQR
Sbjct: 385 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 444
Query: 400 KEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY------ 451
KEER+A L F+++R +AP L GP I P Q FG+
Sbjct: 445 KEERKAFLAAHFARVRA--------LATMAPTL--------GPNIAPHQFNFGHGVPALF 488
Query: 452 --QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR---GR 506
G +PN+ M+ P ++PG R +GP P L P + +
Sbjct: 489 PPPPPAGFGFQPNFVPNMMMPYNMQRQPGQR---SGP-PHGGMPRHLHNPHQMFHQNANQ 544
Query: 507 IYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQ---------------- 550
+R+ P GV M + FS PMQ
Sbjct: 545 GFRHMPNRR------NGVAN---------PAMLHQHHRFSSPMQPMQQAVKHVVPVGELQ 589
Query: 551 --TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 608
+ L ++LA+A+PEQQR +LG+ L+PLV+QL ++ A KVTGMLLE+D+TEVL+L+ESP
Sbjct: 590 APSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESP 649
Query: 609 EALKAKVAEAMEVL 622
+ L+ KVAEAM+VL
Sbjct: 650 DTLRDKVAEAMKVL 663
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/614 (47%), Positives = 391/614 (63%), Gaps = 67/614 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALD 99
SLYVGDL+ SV + QL LF+Q+ V S VCRD++ R+SLGYGYVN+ + +ATRA++
Sbjct: 61 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 120
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNFT +NGKPIR+M+S RDPT+RKSG N+FIKNL+ +IDNK+L++ FS+FG ILS KV
Sbjct: 121 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 180
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATD G+S+GYGF+QF++E SAK AI+ LNGML N +++FVG F+R+QERE T D F
Sbjct: 181 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 240
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL + +++DL F FG ITS VMRDA+G S+CFGFVNF+ + A +V+ L
Sbjct: 241 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 300
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGK D YV +AQKK ER+ ELK KFE + +K + +NLY+KNLDD I+D+ L+
Sbjct: 301 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 360
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+LF FG + SCKVM D +G S+G GFV+F+T E+A+ A+ +MNGKMV KPLYVA+AQR
Sbjct: 361 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 420
Query: 400 KEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY------ 451
KEER+A L F+++R +AP L GP I P Q FG+
Sbjct: 421 KEERKAFLAAHFARVRA--------LATMAPTL--------GPNIAPHQFNFGHGVPALF 464
Query: 452 --QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR---GR 506
G +PN+ M+ P ++PG R +GP P L P + +
Sbjct: 465 PPPPPAGFGFQPNFVPNMMMPYNMQRQPGQR---SGP-PHGGMPRHLHNPHQMFHQNANQ 520
Query: 507 IYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQ---------------- 550
+R+ P GV M + FS PMQ
Sbjct: 521 GFRHMPNRR------NGVAN---------PAMLHQHHRFSSPMQPMQQAVKHVVPVGELQ 565
Query: 551 --TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 608
+ L ++LA+A+PEQQR +LG+ L+PLV+QL ++ A KVTGMLLE+D+TEVL+L+ESP
Sbjct: 566 APSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESP 625
Query: 609 EALKAKVAEAMEVL 622
+ L+ KVAEAM+VL
Sbjct: 626 DTLRDKVAEAMKVL 639
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 302/644 (46%), Positives = 407/644 (63%), Gaps = 70/644 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+S+RVCRDL TRRSLGY YVN+ +A RALD
Sbjct: 13 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 72
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GNIFIKNLDK+IDNKAL+DTFS FGNILSCK+A
Sbjct: 73 MNFDAIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKIA 132
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKT-RF 218
D G S GYGFV F+ EE+A+++I+K+NGMLLN K+VFVG F+ ++ER E DK +F
Sbjct: 133 MDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDKAKKF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKNL+ET + L+++F FG I S +M +G+ + FGFV+FDD + AA++VE
Sbjct: 192 TNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEE 251
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN K+ + KE YVG+AQKK ER+ ELK KFE+ E ++++G+NLYVKNLD+ I D++L
Sbjct: 252 LNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQIDDERL 311
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS+FGTITS +VM + G ++G GFV FS+ EEA+KA+TEMNG++VV+KPLYVALAQ
Sbjct: 312 RKEFSQFGTITSARVMTE-GGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQ 370
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPG 458
RKE+R+A L M+ G RM G G +G G G GY VP
Sbjct: 371 RKEDRKAHLAAQYMQRIAGMRM-------QGQGVNQIFGPG--------GTGY---FVPT 412
Query: 459 M---------RPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYR 509
M P P V+ + Q P R G Q +P P PR +
Sbjct: 413 MAQTQRGGFYAPTQIAPQVRSTPRWQAPNPRAQTAGYAQ-----LPGSGPMRNPRPNTQQ 467
Query: 510 YPPGCNIPDVPVAG---VPGGML-----PGPYDIGGM---PF------RDA------AFS 546
G N P+ G +PG + PG GG PF R+A +
Sbjct: 468 VRAGAN--SRPITGEFRMPGAQVNRPAQPGAMQAGGQQRAPFKYTQAVRNATGQVPGGAA 525
Query: 547 QPMQTGAL---------ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
QP A+ AS LA A+P++Q+ +LGE L+PL+ + D A K+TGMLLE+D
Sbjct: 526 QPQAQTAVVIQGQEPLTASMLAAAAPQEQKQMLGERLFPLIQSMYPDLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVAS 641
+E+LH+LES E+LKAKV EA+ VL+ +++T P P+ + +S
Sbjct: 586 NSELLHMLESRESLKAKVEEAVAVLQAHQAKESTDPIPSLKSSS 629
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+Q G + S RV + R+ G+G+V +++ EAT
Sbjct: 291 RYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVMTEGG--RTKGFGFVCFSSPEEAT 348
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 349 KAVTEMNGRIVVAKPLYVALAQR 371
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 290/614 (47%), Positives = 390/614 (63%), Gaps = 67/614 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALD 99
SLYVGDL+ SV + QL LF+Q+ V S VCRD++ +SLGYGYVN+ + +ATRA++
Sbjct: 62 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAME 121
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNFT +NGKPIR+M+S RDPT+RKSG N+FIKNL+ +IDNK+L++ FS+FG ILS KV
Sbjct: 122 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 181
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATD G+S+GYGF+QF++E SAK AI+ LNGML N +++FVG F+R+QERE T D F
Sbjct: 182 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 241
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL + +++DL F FG ITS VMRDA+G S+CFGFVNF+ + A +V+ L
Sbjct: 242 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 301
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGK D YV +AQKK ER+ ELK KFE + +K + +NLY+KNLDD I+D+ L+
Sbjct: 302 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 361
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+LF FG + SCKVM D +G S+G GFV+F+T E+A+ A+ +MNGKMV KPLYVA+AQR
Sbjct: 362 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 421
Query: 400 KEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY------ 451
KEER+A L F+++R +AP L GP I P Q FG+
Sbjct: 422 KEERKAFLAAHFARVRA--------LATMAPTL--------GPNIAPHQFNFGHGVPALF 465
Query: 452 --QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR---GR 506
G +PN+ M+ P ++PG R +GP P L P + +
Sbjct: 466 PPPPPAGFGFQPNFVPNMMMPYNMQRQPGQR---SGP-PHGGMPRHLHNPHQMFHQNANQ 521
Query: 507 IYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQ---------------- 550
+R+ P GV M + FS PMQ
Sbjct: 522 GFRHMPNRR------NGVAN---------PAMLHQHHRFSSPMQPMQQAVKHVVPVGELQ 566
Query: 551 --TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 608
+ L ++LA+A+PEQQR +LG+ L+PLV+QL ++ A KVTGMLLE+D+TEVL+L+ESP
Sbjct: 567 APSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESP 626
Query: 609 EALKAKVAEAMEVL 622
+ L+ KVAEAM+VL
Sbjct: 627 DTLRDKVAEAMKVL 640
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 298/607 (49%), Positives = 391/607 (64%), Gaps = 33/607 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRDL TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLD+SIDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E TE+ L+ +F ++G ITS +M DGKSK FGFV F+ P+ A +VEA
Sbjct: 192 TNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEA 251
Query: 279 LNGKK-FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ D K YVG+AQKK ER+ ELK +FE E ++++G+NLYVKNLDD+I D++
Sbjct: 252 LNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + N S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALA
Sbjct: 312 LRKEFSPFGTITSAKVMMEDNR-SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRMP-MYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
QRKE+R+A L M+ RM M + PG F P I PQ +G Q
Sbjct: 371 QRKEDRKAHLTSQYMQRMANIRMHQMGQFIQPGTSSGYFV---PTIPAPQRFYGAAQMAQ 427
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRS----GTGPMQQAQQPIPLMQPRML------PRGR 506
P + P Q RPG + S GT P P P Q L PR
Sbjct: 428 IRTNPRW------PAQTPVRPGAQGSANPYGTIPTTYRAAPRPPNQSAALRSNINVPRPI 481
Query: 507 IYRYPPGCNIPDVPVAGVPGGMLPGPYDIG---GMPFRDAAFSQPMQTGALASALANASP 563
+ PP NI P+A + P +G P + A Q Q A+ LA A P
Sbjct: 482 TGQQPP--NIQGRPLA---SQAVVAPAGLGISNAAPVQQAVHIQG-QEPLTATMLAAAPP 535
Query: 564 EQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
++Q+ +LGE L+PL+ ++ D A K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL+
Sbjct: 536 QEQKQMLGERLFPLIQRMYPDLAGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQ 595
Query: 624 NVAQQQA 630
+QA
Sbjct: 596 AHQAKQA 602
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 295/619 (47%), Positives = 392/619 (63%), Gaps = 49/619 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A ++V
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDDSI+D++
Sbjct: 252 LNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ F+ FGTITS KVM + +G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALA
Sbjct: 312 LRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPP------VAPGLGQ-QLFYG-------QG 439
QRKE+R+A L M+ RM M+PP P + Q Q FYG +
Sbjct: 371 QRKEDRKAHLASQYMQRLANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIRA 430
Query: 440 PPIIPPQPGFGYQQQLVPGMRPNY------FVPMVQPGQQNQRPGGRRSGTGPMQQAQQP 493
P P QP +RPN F M P + R ++GT + +P
Sbjct: 431 TPRWPAQPN---------QVRPNAQTGNSGFATMQGPFRTTPRAPTAQAGTMRSTLSARP 481
Query: 494 IPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA 553
I + R Y+Y P +A +P P P + A Q Q
Sbjct: 482 ITAVGVSAQSRPSNYKYTSNMRNPPQAMA------IPAP-----TPVQQAVHIQG-QEPL 529
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE E+LKA
Sbjct: 530 TASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKA 589
Query: 614 KVAEAMEVLRNVAQQQATG 632
KV EA+ VL+ +QA
Sbjct: 590 KVEEAVAVLQAHQAKQAVA 608
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 295/634 (46%), Positives = 395/634 (62%), Gaps = 61/634 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+S+RVCRD+ T+RSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ PL GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFSTFGNILSCKVA
Sbjct: 72 MNYDPLKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK--TRF 218
D G S+GYGFV F+ EE+A +IDK+NGMLLN K+VFVG F+ ++ERE + RF
Sbjct: 132 QDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIPRKEREKELGEKAKRF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E ++D L+++F ++G ITS VM DGKSK FGFV F+DP+ A ++V +
Sbjct: 192 TNVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVAS 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K +VG+AQKK ER+ ELK KFEQ E +++G+NLYVKN+DD+I D++
Sbjct: 252 LNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + +G S+G GFV FS+AEEA+KA+TEMNG++V SKPLYVALA
Sbjct: 312 LRKEFTPFGTITSAKVMLE-DGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
QRKE+R+A L M+ RM QQ+ G P+ P G GY +P
Sbjct: 371 QRKEDRKAHLASQYMQKMANIRM-----------QQI----GQPVFQPSSG-GYFVPTIP 414
Query: 458 GMRPNYFVP--MVQ--------PGQQNQRPGGRRSGTG------------PMQQAQQPIP 495
+F P M Q P Q RPG ++ T Q AQ +
Sbjct: 415 QPPQRFFGPAQMAQIRTATTRWPTQPQSRPGTQQPQTAYPAIPGPFRPGPRPQAAQPALR 474
Query: 496 LMQPRMLPRG--RIYRYPPGCNIPDVPVAGVPGGMLPGPY--------------DIGGMP 539
+ R + G + PP +P P V P Y + P
Sbjct: 475 SISARPITGGGPMQTQIPPRAPMP--PTVSVNAAQRPTNYKYTANMRNPPQTLGHVAHQP 532
Query: 540 FRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQT 599
A Q + LA+A ++Q+ +LGE L+PL+ + A K+TGMLLE+D +
Sbjct: 533 QVQQAVHVQGQEPLTTTMLADAPLQEQKQMLGERLFPLISAMYSKLAGKITGMLLEIDNS 592
Query: 600 EVLHLLESPEALKAKVAEAMEVLR-NVAQQQATG 632
E+LH+LE E+LK+KV EA+ VL+ + A+Q A G
Sbjct: 593 ELLHMLEHRESLKSKVEEAVAVLQAHEAKQAAAG 626
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 298/631 (47%), Positives = 391/631 (61%), Gaps = 55/631 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A ++V
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDDSI+D++
Sbjct: 252 LNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ F+ FGTITS KVM + +G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALA
Sbjct: 312 LRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPP------VAPGLGQ-QLFYG-------QG 439
QRKE+R+A L M+ RM M+PP P + Q Q FYG +
Sbjct: 371 QRKEDRKAHLASQYMQRLANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIRA 430
Query: 440 PPIIPPQP------------GFGYQQQLVPGMRPNYFVPMVQPGQQ----NQRP--GGRR 481
P P QP GF Q R P Q G + RP G +
Sbjct: 431 TPRWPAQPNQVRPNAQTGNSGFATMQG---PFRTTPRAPTAQAGTMRSTLSARPITGQQA 487
Query: 482 SGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFR 541
G MQ P + R Y+Y P +A +P P P +
Sbjct: 488 VGGANMQSRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAMA------IPAP-----TPVQ 536
Query: 542 DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
A Q Q AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+
Sbjct: 537 QAVHIQG-QEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSEL 595
Query: 602 LHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
LH+LE E+LKAKV EA+ VL+ +QA
Sbjct: 596 LHMLEHNESLKAKVEEAVAVLQAHQAKQAVA 626
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 292/643 (45%), Positives = 389/643 (60%), Gaps = 73/643 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E +D LK IF ++G S VM D +GKS+ FGFV+F+ +DA R+V+
Sbjct: 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM D G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRAAYYPTSQLA 429
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT-GPMQQAQQPIPLMQPR 500
+ P P + Q G+RP +F M PG RP R T M+ A Q PR
Sbjct: 430 QLRPSPRWTTQ-----GVRPQHFQNM--PG--TMRPSAPRPQTFSTMRPASQV-----PR 475
Query: 501 MLPRGRI--------------------------YRYPPGCNIPDVPVAGVPGGMLPGPYD 534
M+ R+ Y+Y P P + P + P
Sbjct: 476 MMSTQRVATQTMGPRPSTAAAAASAPPVRGVPQYKYAPSVRNPQQHMNTQPQVTMQQP-- 533
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 534 ---------AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLL 584
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 637
E+D +E+LH+LESPE+L++KV EA+ VL+ ++A + T+
Sbjct: 585 EIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKTVTN 627
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 291/634 (45%), Positives = 392/634 (61%), Gaps = 53/634 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPMYPPVAPG----------LGQQLFY--GQGP 440
RKEER+A L + + +R P + Y P P + +Y Q
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLA 429
Query: 441 PIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP- 499
+ P P + Q G RP+ F M PG RP R M+ A +P +
Sbjct: 430 QLARPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVMST 480
Query: 500 ---------RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM- 549
M PR + VP G+ + P A QP
Sbjct: 481 QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQP--QVAMQQPAV 538
Query: 550 ----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 HVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHML 598
Query: 606 ESPEALKAKVAEAMEVL-----RNVAQQQATGPS 634
ESPE+L++KV EA+ VL + AQ+ P+
Sbjct: 599 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPT 632
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 290/634 (45%), Positives = 388/634 (61%), Gaps = 53/634 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQK+ ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR----------PPVGPRMPMYP--------PVAPGLGQQLFYGQGP 440
RKEER+A L M+ P + P P P P Q
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYHTNQLA 429
Query: 441 PIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPR 500
+ P P + Q G RP+ F M PG RP R M+ A +P +
Sbjct: 430 QLARPSPRWTAQ-----GARPHPFQNM--PGAI--RPAAPRPPFSTMRPASSQVPRVMST 480
Query: 501 ----------MLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM- 549
M PR + VP G+ + P A QP
Sbjct: 481 QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQP--QVAMQQPAV 538
Query: 550 ----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 HVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHML 598
Query: 606 ESPEALKAKVAEAMEVL-----RNVAQQQATGPS 634
ESPE+L++KV EA+ VL + AQ+ P+
Sbjct: 599 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPT 632
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 287/619 (46%), Positives = 385/619 (62%), Gaps = 57/619 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 22 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 81
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 82 AERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 141
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 142 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 200
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +D
Sbjct: 201 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 260
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 261 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 320
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 321 TIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 379
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 380 LYVALAQRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGG-----YFVPAVPQAQ 434
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGG--------RRSGTGPMQQAQQP--I 494
+P + QL MRPN QQ RP G R+SG P + P +
Sbjct: 435 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGV 487
Query: 495 PLMQPRM----------LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAA 544
P P + Y+Y P + + P + G P
Sbjct: 488 PTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQ-PAVHVQGQEPL---- 542
Query: 545 FSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+
Sbjct: 543 ---------TASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHM 593
Query: 605 LESPEALKAKVAEAMEVLR 623
LESPE+L++KV EA+ VL+
Sbjct: 594 LESPESLRSKVDEAVAVLQ 612
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 287/619 (46%), Positives = 385/619 (62%), Gaps = 57/619 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGG--------RRSGTGPMQQAQQP--I 494
+P + QL MRPN QQ RP G R+SG P + P +
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGV 470
Query: 495 PLMQPRM----------LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAA 544
P P + Y+Y P + + P + G P
Sbjct: 471 PTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQ-PAVHVQGQEPL---- 525
Query: 545 FSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+
Sbjct: 526 ---------TASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHM 576
Query: 605 LESPEALKAKVAEAMEVLR 623
LESPE+L++KV EA+ VL+
Sbjct: 577 LESPESLRSKVDEAVAVLQ 595
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 287/619 (46%), Positives = 387/619 (62%), Gaps = 57/619 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGG--------RRSGTGPMQQAQQP--I 494
+P + QL MRPN QQ RP G R+SG P + P +
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGV 470
Query: 495 PLMQPRM----------LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAA 544
P P + Y+Y P + + P + G P
Sbjct: 471 PTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQ-PAVHVQGQEPL---- 525
Query: 545 FSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+
Sbjct: 526 ---------TASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHM 576
Query: 605 LESPEALKAKVAEAMEVLR 623
LESPE+L++KV EA+ VL+
Sbjct: 577 LESPESLRSKVDEAVAVLQ 595
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/629 (46%), Positives = 391/629 (62%), Gaps = 45/629 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L+++F ++G S VM D +GKS+ FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPP------IIPPQ------ 446
RKEER+A L M+ R P + P Y PP IP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINP-------YQAAPPSGYFMAAIPQAQNRAAY 422
Query: 447 -PGFGYQQQLVPGMRPNYFVPMVQPGQ-QNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
P G QL PG P + V+P QN G R SG P + PRM+
Sbjct: 423 YPAAGQMAQLRPG--PRWTTQNVRPQHFQNMSGGIRPSGPRPQTFSTVRPSSQVPRMMTT 480
Query: 505 GRIYRYPPG------CNIPDVPVAGVP-----GGMLPGPYDIGGMPFRDAAFSQPM---- 549
R+ G PV GVP G+ + P QP
Sbjct: 481 QRVGTQTMGPRPATAAAAAATPVRGVPQYKYAAGVRNPQQHMNTQP--QVTMQQPAVHVQ 538
Query: 550 -QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 608
Q AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESP
Sbjct: 539 GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP 598
Query: 609 EALKAKVAEAMEVLRNVAQQQATGPSPTD 637
E+L++KV EA+ VL+ ++A + T+
Sbjct: 599 ESLRSKVDEAVAVLQAHQAKEAAQKTVTN 627
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 287/617 (46%), Positives = 382/617 (61%), Gaps = 47/617 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP-- 499
+ P P + Q G RP+ F M PG RP R M+ A +P +
Sbjct: 430 QLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVMSTQ 480
Query: 500 --------RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM-- 549
M PR + VP G+ + P QP
Sbjct: 481 RVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNAQP--QVTMQQPAVH 538
Query: 550 ---QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LE
Sbjct: 539 VQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLE 598
Query: 607 SPEALKAKVAEAMEVLR 623
SPE+L++KV EA+ VL+
Sbjct: 599 SPESLRSKVDEAVAVLQ 615
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 292/623 (46%), Positives = 389/623 (62%), Gaps = 49/623 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++F ++G S VM D+ GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ +EA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 451
LYVALAQRKEER+A L M+ G R L Q P PG GY
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRIAGMR---------ALPANTIINQ----FQPTPG-GY 408
Query: 452 QQQLVPGM--RPNYFVP----MVQPG---QQNQRPGG--------RRSGTGPMQQAQQPI 494
VP RP Y+ P ++P QQ RP G R+SG P + P
Sbjct: 409 FMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGGRPQGFQGVPNAIRQSGPRPTLRHLTPA 468
Query: 495 PLMQP-RMLPRG--RIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQT 551
Q R LP R+ N+ P P PY QP+QT
Sbjct: 469 SNTQASRGLPTTPQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAANVRSPHPAIQPLQT 528
Query: 552 GA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTE 600
AS LA A P++Q+ +LGE L+PL+ + ++ A K+TGMLLE+D +E
Sbjct: 529 PQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSE 588
Query: 601 VLHLLESPEALKAKVAEAMEVLR 623
+LH+LESPE+L++KV EA+ VL+
Sbjct: 589 LLHMLESPESLRSKVEEAVAVLQ 611
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/632 (45%), Positives = 392/632 (62%), Gaps = 48/632 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L+++F ++G S VM D +GKS+ FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPP------IIPPQ------ 446
RKEER+A L M+ R P + P Y PP IP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINP-------YQAAPPSGYFMAAIPQAQNRAAY 422
Query: 447 -PGFGYQQQLVPGMRPNYFVPMVQPGQ-QNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
P G QL PG P + V+P QN G R SG P + PRM+
Sbjct: 423 YPAAGQMAQLRPG--PRWTTQNVRPQHFQNMSGGIRPSGPRPQTFSTVRPSSQVPRMMTT 480
Query: 505 GRIYRYPPGCNIP---------DVPVAGVP-----GGMLPGPYDIGGMPFRDAAFSQPM- 549
R+ + P PV GVP G+ + P QP
Sbjct: 481 QRVGQSTDTTMGPRPATAAAAAATPVRGVPQYKYAAGVRNPQQHMNTQP--QVTMQQPAV 538
Query: 550 ----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
Q AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 HVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHML 598
Query: 606 ESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 637
ESPE+L++KV EA+ VL+ ++A + T+
Sbjct: 599 ESPESLRSKVDEAVAVLQAHQAKEAAQKTVTN 630
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/626 (46%), Positives = 384/626 (61%), Gaps = 65/626 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I+D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGINDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP------ 495
+ P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 430 QLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVMSTQ 480
Query: 496 --------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
M PR P R Y+Y G P + P + P
Sbjct: 481 RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQP----- 535
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D
Sbjct: 536 ------AVHAQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 289/624 (46%), Positives = 384/624 (61%), Gaps = 61/624 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR----------PPVGPRMPMYP-----PVAPGLGQQLFYGQGPPII 443
RKEER+A L M+ P + P P P P + Y I
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPASQIA 429
Query: 444 PPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP-------- 495
+P + Q G RP+ F M RP R G M+ A +P
Sbjct: 430 QLRPSPRWTAQ---GARPHPFQNM----PSAIRPAAPRPPFGTMRPASTQVPRVMSTQRV 482
Query: 496 ------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMP 539
M PR P R Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQP------- 535
Query: 540 FRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQT 599
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +
Sbjct: 536 ----AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNS 591
Query: 600 EVLHLLESPEALKAKVAEAMEVLR 623
E+LH+LESPE+L++KV EA+ VL+
Sbjct: 592 ELLHMLESPESLRSKVDEAVAVLQ 615
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 288/639 (45%), Positives = 387/639 (60%), Gaps = 65/639 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG +G S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + ++ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD + D++L
Sbjct: 251 MNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 370 RKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYSANQLA 429
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM 501
+ P P + Q G+RP +F Q Q RP R T +A PRM
Sbjct: 430 QLRPSPRWATQ-----GVRPQHF----QNIQNAMRPSAPRPQTFNAIRASTATNTQVPRM 480
Query: 502 LPRGRI------------------------YRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
+ R+ Y+Y PG P +A +P P
Sbjct: 481 MASQRMPTQALSQRPAAASATTAPVRAMPQYKYAPGVRNPQQHMASQQQVPMPQP----- 535
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
A Q AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D
Sbjct: 536 ------AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEID 589
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPT 636
+E+LH+LESPE+L++KV EA+ VL+ ++A S T
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSTT 628
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 297/621 (47%), Positives = 389/621 (62%), Gaps = 44/621 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A ++V
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDSI D++
Sbjct: 252 LNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALA
Sbjct: 312 LRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQQQL 455
QRKE+R+A L M+ RM M PG F P IP PQ +G Q
Sbjct: 371 QRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFV----PTIPQPQRFYGPAQMA 426
Query: 456 VPGMRPNYFVPMVQPGQQNQ-RPGGR--RSGTGPMQ---QAQQPIPLMQPRMLPRGRIYR 509
P + P Q NQ RP + SG MQ +A P QP + R +
Sbjct: 427 QIRTTPRW------PAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGAM---RSQQ 477
Query: 510 YPPGCNIPDV----PVAGVPGGMLPGPYDIGG--------------MPFRDAAFSQPMQT 551
G N+ P GV P Y P + A Q Q
Sbjct: 478 TVGGANMQSRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAMAIPTPTPVQQAVHIQG-QE 536
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE E+L
Sbjct: 537 PLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESL 596
Query: 612 KAKVAEAMEVLRNVAQQQATG 632
KAKV EA+ VL+ +QA
Sbjct: 597 KAKVEEAVAVLQAHQAKQAVA 617
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 297/621 (47%), Positives = 389/621 (62%), Gaps = 44/621 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E T+D LK +F ++G ITS VM DGKS+ FGFV F+DPD A ++V
Sbjct: 192 TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDSI D++
Sbjct: 252 LNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALA
Sbjct: 312 LRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQQQL 455
QRKE+R+A L M+ RM M PG F P IP PQ +G Q
Sbjct: 371 QRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFV----PTIPQPQRFYGPAQMA 426
Query: 456 VPGMRPNYFVPMVQPGQQNQ-RPGGR--RSGTGPMQ---QAQQPIPLMQPRMLPRGRIYR 509
P + P Q NQ RP + SG MQ +A P QP + R +
Sbjct: 427 QIRTTPRW------PAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGAM---RSQQ 477
Query: 510 YPPGCNIPDV----PVAGVPGGMLPGPYDIGG--------------MPFRDAAFSQPMQT 551
G N+ + P GV P Y P + A Q Q
Sbjct: 478 TVGGANMQNRSMAGPAVGVTAQSRPSNYKYTSNMRNPPQAMAIPAPTPVQQAVHIQG-QE 536
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE E+L
Sbjct: 537 PLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESL 596
Query: 612 KAKVAEAMEVLRNVAQQQATG 632
KAKV EA+ VL+ +QA
Sbjct: 597 KAKVEEAVAVLQAHQAKQAVA 617
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 291/646 (45%), Positives = 391/646 (60%), Gaps = 75/646 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK+IF ++G S VM D GKSK FGFV+F+ +DA R+V+
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD + D++
Sbjct: 250 EMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 398 QRKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------ 442
QRKEER+A L M+ R P+ P P F P
Sbjct: 369 QRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYPTSQL 428
Query: 443 --IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT-GPMQQAQQPIPLMQP 499
+ P P + Q G+RP +F M RP R T P++ A Q P
Sbjct: 429 AQLRPSPRWATQ-----GVRPQHFQNMPNAA---VRPSAPRPQTFNPVRPASQ-----VP 475
Query: 500 RMLPRGRI--------------------------YRYPPGCNIPDVPVAGVPGGMLPGPY 533
RM+ R+ Y+Y PG P + P
Sbjct: 476 RMMTSQRMGSQAMGPRPAAAGAATGPAQVRGVPQYKYAPGVRNPQQRMPTQP-------- 527
Query: 534 DIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGML 593
+P + A Q AS LA A P++Q+ +LGE L+PL+ + A K+TGML
Sbjct: 528 ---QVPMQQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGML 584
Query: 594 LEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQA---TGPSPT 636
LE+D +E+LH+LESPE+L++KV EA+ VL+ ++A + PSP
Sbjct: 585 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSVPSPA 630
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/425 (60%), Positives = 315/425 (74%), Gaps = 16/425 (3%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLY GDLD + ++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVN+ +A RA+
Sbjct: 19 ATSLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAI 78
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D LNF +NGKPIRIMYS RDP +RKSG GNIFIKNLDK IDNKAL+DTFS FGNI+S K
Sbjct: 79 DVLNFNVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFGNIVSAK 138
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D G S+GYGFVQF +E+A+ AIDK+NGMLLNDKQV+VGPF R+ ER T F
Sbjct: 139 VAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGER--GGGPTTF 196
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNVYVKNL E+ ED LK++FG G +TS +M+D +GKSK FGFV F++ + A+ +VE
Sbjct: 197 NNVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEK 256
Query: 279 LNG-KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+G K +DK W V +AQKK ERE ELK KF+ +E +K G NLY+KNL+D++ D K
Sbjct: 257 LDGYDKIEDKAWVVCRAQKKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDTVDDAK 316
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ELF+EFGTITSC+VMRD +G SRGS FVAFS+A+EA++A+TEMNGKM +KPLYVALA
Sbjct: 317 LRELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAVTEMNGKMAGTKPLYVALA 376
Query: 398 QRKEERRARLQFSQMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPII----PPQP 447
QRKE+RR RLQ + V M PP PG ++YGQ PP + PQP
Sbjct: 377 QRKEDRRMRLQAQFAQRAVANGGMPGMPYGMPPPGVPG---AMYYGQPPPGVMGPPQPQP 433
Query: 448 GFGYQ 452
GFG+Q
Sbjct: 434 GFGFQ 438
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 291/629 (46%), Positives = 386/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 289/613 (47%), Positives = 387/613 (63%), Gaps = 45/613 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + + LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ +EA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 451
LYVALAQRKEER+A L M+ G R L Q P PG GY
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRIAGMR---------ALPANTIINQ----FQPTPG-GY 408
Query: 452 QQQLVPGM--RPNYFVP----MVQPG---QQNQRPGGRRSGTGPMQQAQQPIPLMQPRML 502
VP RP Y+ P ++P QQ RP G + ++Q+ P P + R L
Sbjct: 409 FMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGGRPQGFQGVPNTIRQS-GPRPAL--RHL 465
Query: 503 PRGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA-------- 553
R+ P N+ P P PY QP+QT
Sbjct: 466 TPARV---PTAVQNLSPRPSVATPAPRAVPPYKYAANVRSPHPAIQPLQTPQPAVHVQGQ 522
Query: 554 ---LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEA 610
AS LA A P++Q+ +LGE L+PL+ + ++ A K+TGMLLE+D +E+LH+LESPE+
Sbjct: 523 EPLTASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPES 582
Query: 611 LKAKVAEAMEVLR 623
L++KV EA+ VL+
Sbjct: 583 LRSKVEEAVAVLQ 595
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 291/629 (46%), Positives = 386/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 291/629 (46%), Positives = 386/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/626 (46%), Positives = 384/626 (61%), Gaps = 65/626 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP------ 495
+ P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 430 QLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVMSTQ 480
Query: 496 --------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
M PR P R Y+Y G P + P + P
Sbjct: 481 RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQP----- 535
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
A Q AS LA+A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 536 ------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPNLAGKITGMLLEID 589
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 295/617 (47%), Positives = 387/617 (62%), Gaps = 45/617 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A ++V
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDSI D++
Sbjct: 252 LNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALA
Sbjct: 312 LRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQQQL 455
QRKE+R+A L M+ RM M PG F P IP PQ +G Q
Sbjct: 371 QRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFV----PTIPQPQRFYGPAQMA 426
Query: 456 VPGMRPNYFVPMVQPGQQNQ-RPGGR--RSGTGPMQ---QAQQPIPLMQPRMLPRGRIYR 509
P + P Q NQ RP + SG MQ +A P QP + R +
Sbjct: 427 QIRTTPRW------PAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGAM-RSTLSA 479
Query: 510 YPPGCNIPDVPVAGVPGGMLPGPYDIGG--------------MPFRDAAFSQPMQTGALA 555
P + GV P Y P + A Q Q A
Sbjct: 480 RP-------ITAVGVSAQSRPSNYKYTSNMRNPPQAMAIPTPTPVQQAVHIQG-QEPLTA 531
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE E+LKAKV
Sbjct: 532 SMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKV 591
Query: 616 AEAMEVLRNVAQQQATG 632
EA+ VL+ +QA
Sbjct: 592 EEAVAVLQAHQAKQAVA 608
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 291/629 (46%), Positives = 385/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 292/642 (45%), Positives = 389/642 (60%), Gaps = 70/642 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQLA 429
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP------ 495
+ P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 430 QLRPSPRWTAQ-----GARPHPFQNM--PGAI--RPAAPRPPFSTMRPASSQVPRVMSTQ 480
Query: 496 --------LMQPR----------MLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
M PR + G Y+Y G P + P + P
Sbjct: 481 RVANTSTQTMGPRPAAAAAAATPAVRTGPQYKYAAGVRNPQQHLNTQPQVAMQQP----- 535
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D
Sbjct: 536 ------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 598 QTEVLHLLESPEALKAKVAEAMEVL-----RNVAQQQATGPS 634
+E+LH+LESPE+L++KV EA+ VL + AQ+ P+
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPA 631
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 286/619 (46%), Positives = 385/619 (62%), Gaps = 57/619 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGG--------RRSGTGPMQQAQQP--I 494
+P + QL MRPN QQ RP G R+SG P + P +
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGV 470
Query: 495 PLMQPRM----------LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAA 544
P + Y+Y P + + P + G P
Sbjct: 471 PTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQ-PAVHVQGQEPL---- 525
Query: 545 FSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+
Sbjct: 526 ---------TASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHM 576
Query: 605 LESPEALKAKVAEAMEVLR 623
LESPE+L++KV EA+ VL+
Sbjct: 577 LESPESLRSKVDEAVAVLQ 595
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 292/623 (46%), Positives = 387/623 (62%), Gaps = 49/623 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + + LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ +EA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 451
LYVALAQRKEER+A L M+ G R L Q P PG GY
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRIAGMR---------ALPANTIINQ----FQPTPG-GY 408
Query: 452 QQQLVPGM--RPNYFVP----MVQPG---QQNQRPGG--------RRSGTGPMQQAQQPI 494
VP RP Y+ P ++P QQ RP G R+SG P + P
Sbjct: 409 FMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGGRPQGFQGVPNTIRQSGPCPALRHLTPA 468
Query: 495 PLMQP-RMLPRG--RIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQT 551
Q R LP R+ N+ P P PY QP+QT
Sbjct: 469 SNTQASRGLPTTPQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAANVRSPHPAIQPLQT 528
Query: 552 GA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTE 600
AS LA A P++Q+ +LGE L+PL+ + ++ A K+TGMLLE+D +E
Sbjct: 529 PQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSE 588
Query: 601 VLHLLESPEALKAKVAEAMEVLR 623
+LH+LESPE+L++KV EA+ VL+
Sbjct: 589 LLHMLESPESLRSKVEEAVAVLQ 611
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 290/626 (46%), Positives = 383/626 (61%), Gaps = 65/626 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP------ 495
+ P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 430 QLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVMSTQ 480
Query: 496 --------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
M PR P R Y+Y G P + P + P
Sbjct: 481 RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQP----- 535
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D
Sbjct: 536 ------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/629 (46%), Positives = 385/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 292/623 (46%), Positives = 387/623 (62%), Gaps = 49/623 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + + LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ +EA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 451
LYVALAQRKEER+A L M+ G R L Q P PG GY
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRIAGMR---------ALPANTIINQ----FQPTPG-GY 408
Query: 452 QQQLVPGM--RPNYFVP----MVQPG---QQNQRPGG--------RRSGTGPMQQAQQPI 494
VP RP Y+ P ++P QQ RP G R+SG P + P
Sbjct: 409 FMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGGRPQGFQGVPNTIRQSGPRPALRHLTPA 468
Query: 495 PLMQP-RMLPRG--RIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQT 551
Q R LP R+ N+ P P PY QP+QT
Sbjct: 469 SNTQASRGLPTTPQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAANVRSPHPAIQPLQT 528
Query: 552 GA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTE 600
AS LA A P++Q+ +LGE L+PL+ + ++ A K+TGMLLE+D +E
Sbjct: 529 PQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSE 588
Query: 601 VLHLLESPEALKAKVAEAMEVLR 623
+LH+LESPE+L++KV EA+ VL+
Sbjct: 589 LLHMLESPESLRSKVEEAVAVLQ 611
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 296/631 (46%), Positives = 391/631 (61%), Gaps = 55/631 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A ++V
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDSI D++
Sbjct: 252 LNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALA
Sbjct: 312 LRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPP------VAPGLGQ-QLFYG-------QG 439
QRKE+R+A L M+ RM ++ P P + Q Q FYG +
Sbjct: 371 QRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRT 430
Query: 440 PPIIPPQP------------GFGYQQQLVPGMRPNYFVPMVQPGQQ----NQRP--GGRR 481
P P QP GF Q R P QPG + RP G +
Sbjct: 431 TPRWPAQPNQVRPNAQTGSSGFATMQG---PFRAAPRAPTAQPGAMRSTLSARPITGQQT 487
Query: 482 SGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFR 541
G MQ P + R Y+Y P +A +P P P +
Sbjct: 488 VGGANMQSRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAMA------IPTP-----TPVQ 536
Query: 542 DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
A Q Q AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+
Sbjct: 537 QAVHIQG-QEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSEL 595
Query: 602 LHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
LH+LE E+LKAKV EA+ VL+ +QA
Sbjct: 596 LHMLEHNESLKAKVEEAVAVLQAHQAKQAVA 626
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 292/635 (45%), Positives = 389/635 (61%), Gaps = 57/635 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G +VS+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ ++A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK+IF +FG TS VM D G + FGFV+F++ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + +VG+AQKK ER+MELK +FEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR------PPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQ 452
RKEER+A L M+ P M Y P P Q P G
Sbjct: 370 RKEERQAHLITQYMQRVANARAAANPVMNPYQPAPPSGFIMTAIPQAQSRSAYYPTAGQM 429
Query: 453 QQLVPGMRPNYFVPMVQPGQQNQRPGGRR------SGTGPMQQAQQPIPLMQPRML---- 502
QL PG P + V+P PG R ++ + Q P+M + +
Sbjct: 430 AQLRPG--PRWTTQSVRPQHFQNMPGVMRPPRPRPQNFSTVRASSQVPPMMNTQRVAAQS 487
Query: 503 --PR------------GRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQP 548
PR G Y+Y G P VA P L I G
Sbjct: 488 SGPRHPVATAATHVRGGPQYKYSTGVRNPQQHVATQPQVTLQPAVHIQG----------- 536
Query: 549 MQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 608
Q AS LA A ++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESP
Sbjct: 537 -QEPLTASMLAAAPLQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP 595
Query: 609 EALKAKVAEAMEVL-----RNVAQQQAT----GPS 634
E+L++KV EA+ VL + VAQ+ AT GPS
Sbjct: 596 ESLRSKVDEAVAVLQAHQAKEVAQKPATNSTAGPS 630
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/599 (47%), Positives = 384/599 (64%), Gaps = 28/599 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND +VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREVELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+++F +FG + S VMRD+ G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ ++++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR P +G P P V GQ +YG + P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGSPFLGSFQQPTSYFLPAVPQPPGQAAYYGSS-SMPP 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
PQP + Q P + MV+P ++RP S M+QA +P P
Sbjct: 429 PQPAPRWTSQ--PPRSSS--ASMVRPPGMSRRPSAHISS---MRQASTQVPRPLPHTQRV 481
Query: 505 GRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPE 564
I G + + G P +LP ++ A P Q S LA A
Sbjct: 482 ANIGTQTTGSSGTGCCMPGRP--LLPYKSTHNTHRVQEPAVHVPGQEPLTVSMLAAAPLH 539
Query: 565 QQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+Q+ ++GE LYPL+ +++ A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL+
Sbjct: 540 EQKQMIGERLYPLIREVQSQLAGKITGMLLEIDNSELLLMLESPESLHAKVEEAVAVLQ 598
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L V++ L +LF+Q G+++SV+V RD S+ S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRD-SSGHSRGFGFVNFETHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGMITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/618 (47%), Positives = 387/618 (62%), Gaps = 50/618 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG++G S VM D +GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR---------PPVGPRMPMYPP-------VAPGLGQQLFYGQGPPI 442
RKEER+A L M+ P + P P PP + P + +Y G
Sbjct: 370 RKEERQAHLTNQYMQRMASVRVPNPVINPYQP--PPSSYFMAAIPPAQNRAAYYPPGQIA 427
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT-GPMQQAQQPIPLM--- 497
+ P P + Q G RP+ F M PG RP R T M+ A +P +
Sbjct: 428 QLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPTAPRPPTFSTMRPASNQVPRVVSA 478
Query: 498 -------QPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM- 549
M PR + VP G+ + P A QP
Sbjct: 479 QRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNPQQHLNTQP--QVAMQQPAV 536
Query: 550 ----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
Q AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+L
Sbjct: 537 HVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 596
Query: 606 ESPEALKAKVAEAMEVLR 623
ESPE+L++KV EA+ VL+
Sbjct: 597 ESPESLRSKVDEAVAVLQ 614
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 293/644 (45%), Positives = 394/644 (61%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++QA P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQAG-PRPTLR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV 520
Query: 540 --FRDAA-------------FSQPM-----QTGALASALANASPEQQRTLLGENLYPLVD 579
++ A+ SQP Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIPPLQASQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 295/623 (47%), Positives = 394/623 (63%), Gaps = 59/623 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 QDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E +++ L+ +F ++G ITS VM DG S+ FGFV F+DPD A R+
Sbjct: 183 TNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLE 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDD+I D++
Sbjct: 243 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 303 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 361
Query: 398 QRKEERRARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
QRKE+R+A L M+ RM M PG F P IPP F Y +
Sbjct: 362 QRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGSAGGYFV----PTIPPAQRF-YGPAQI 416
Query: 457 PGMRPNYFV---PMVQPGQQ-------NQRPGGRRSGTGPMQQA------QQPI------ 494
MRP+ P V+P Q N + R + GP Q A +PI
Sbjct: 417 TQMRPSQRWTAQPPVRPSTQTAASAYPNMQAPFRPTTRGPTQTALRTSLGARPITGQQGV 476
Query: 495 ---PLMQPRMLPRGRI--YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM 549
P ++ ++P GR Y+Y P P V I G
Sbjct: 477 AAAPSIRAPLVPSGRTAGYKYTSTVRNPPAPQPAV---------HIQG------------ 515
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
Q AS LA A ++Q+ +LGE L+PL+ ++ D A K+TGMLLE+D +E+LH+LE E
Sbjct: 516 QEPLTASMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGE 575
Query: 610 ALKAKVAEAMEVLR-NVAQQQAT 631
+LKAKV EA+ VL+ + A+QQAT
Sbjct: 576 SLKAKVDEAVAVLQAHQAKQQAT 598
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 23/191 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC--RDLSTRRSLGYGYVNYNAAHEATRA 97
T++YV + +D L D+F + G++ S +V D S+R G+G+V + A RA
Sbjct: 183 TNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSR---GFGFVAFEDPDAAERA 239
Query: 98 LDELNFTPL-NGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
ELN L GKP+ R + + + N+++KNLD +ID
Sbjct: 240 CLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTID 299
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
++ L F+ FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 300 DERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 358
Query: 201 GPFLRKQERES 211
RK++R++
Sbjct: 359 ALAQRKEDRKA 369
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V L RS G+G+V +++ EAT
Sbjct: 283 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEAT 340
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 341 KAVTEMNGRIVGTKPLYVALAQR 363
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/625 (46%), Positives = 390/625 (62%), Gaps = 54/625 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPALR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQP 548
G P +P GVP + PY QP
Sbjct: 469 GNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQP 525
Query: 549 MQTG----------ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 526 LQAQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 585
Query: 599 TEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 SELLHMLESPESLRSKVDEAVAVLQ 610
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 296/631 (46%), Positives = 390/631 (61%), Gaps = 55/631 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E T+D LK +F ++G ITS VM DGKS+ FGFV F+DPD A ++V
Sbjct: 192 TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDSI D++
Sbjct: 252 LNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALA
Sbjct: 312 LRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPP------VAPGLGQ-QLFYG-------QG 439
QRKE+R+A L M+ RM ++ P P + Q Q FYG +
Sbjct: 371 QRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRT 430
Query: 440 PPIIPPQP------------GFGYQQQLVPGMRPNYFVPMVQPGQQ----NQRP--GGRR 481
P P QP GF Q R P QPG + RP G +
Sbjct: 431 TPRWPAQPNQVRPNAQTGSSGFATMQG---PFRAAPRAPTAQPGAMRSTLSARPITGQQT 487
Query: 482 SGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFR 541
G MQ P + R Y+Y P +A +P P P +
Sbjct: 488 VGGANMQNRSMAGPAVGVTAQSRPSNYKYTSNMRNPPQAMA------IPAP-----TPVQ 536
Query: 542 DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
A Q Q AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+
Sbjct: 537 QAVHIQG-QEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSEL 595
Query: 602 LHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
LH+LE E+LKAKV EA+ VL+ +QA
Sbjct: 596 LHMLEHNESLKAKVEEAVAVLQAHQAKQAVA 626
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 290/605 (47%), Positives = 379/605 (62%), Gaps = 45/605 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++ KSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPG 458
RKEER+A L M+ R P + P P P GY +P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINP--------------YQPAPPSGYFMAAIPQ 415
Query: 459 M--RPNYFVPMVQPGQQNQ-RPGGRRSGTG----PMQQAQQPIPLMQPRMLPRGRIYRYP 511
R Y+ P Q Q RP R + G P Q I PR P R P
Sbjct: 416 TQNRAAYY----PPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPR--PPFSTMR-P 468
Query: 512 PGCNIPDV----PVAGVPG---GMLPGPYDIGGMP-FRDAAFSQPM-----QTGALASAL 558
+P V VA G P P R QP Q AS L
Sbjct: 469 ASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVTMQQPAVHVQGQEPLTASML 528
Query: 559 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
A+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA
Sbjct: 529 ASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEA 588
Query: 619 MEVLR 623
+ VL+
Sbjct: 589 VAVLQ 593
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 290/629 (46%), Positives = 384/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY ++ RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/626 (46%), Positives = 389/626 (62%), Gaps = 55/626 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPALR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQP 548
G P +P GVP + PY QP
Sbjct: 469 GNA---PASRGLPTTAQRVGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQP 525
Query: 549 MQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 526 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 NSELLHMLESPESLRSKVDEAVAVLQ 611
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/627 (46%), Positives = 392/627 (62%), Gaps = 57/627 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
LYVALAQRKEER+A L M+ G R +P A + Q G +P P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALP-----ANAILNQFQPAAGGYFVPAVP--- 414
Query: 451 YQQQLVPGMRPNYFVP----MVQPG---QQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
Q Q RP Y+ P ++P QQ RP G + ++Q+ P P ++ + P
Sbjct: 415 -QAQ----GRPPYYTPNQLAQIRPNPRWQQGGRPQGFQGMPSAIRQS-GPRPALR-HLAP 467
Query: 504 RGRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQ 547
G P +P GVP + PY Q
Sbjct: 468 TGNA---PASRGLPTTAQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQ 524
Query: 548 PMQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEM 596
P+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+
Sbjct: 525 PLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEI 584
Query: 597 DQTEVLHLLESPEALKAKVAEAMEVLR 623
D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 585 DNSELLHMLESPESLRSKVDEAVAVLQ 611
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/626 (46%), Positives = 389/626 (62%), Gaps = 55/626 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPALR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQP 548
G P +P GVP + PY QP
Sbjct: 469 GNA---PASRGLPTTAQRVGVPTAVQSLAPRAAVAAAAPRAVAPYKYASSVRSPHPAMQP 525
Query: 549 MQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 526 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 NSELLHMLESPESLRSKVDEAVAVLQ 611
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 295/642 (45%), Positives = 395/642 (61%), Gaps = 74/642 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
LYVALAQRKEER+A L M+ G R +P A + Q G +P P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALP-----ANAILNQFQPAAGGYFVPAVP--- 414
Query: 451 YQQQLVPGMRPNYFVP----MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
Q Q RP Y+ P ++P + Q+ GGR G M P L Q P R
Sbjct: 415 -QAQ----GRPPYYTPNQLAQMRPNPRWQQ-GGRPQGFQGM-----PSALRQSGPRPALR 463
Query: 507 IYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP---------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 -HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAP 522
Query: 540 FRDAA-------FSQPMQTGA-----------LASALANASPEQQRTLLGENLYPLVDQL 581
++ A+ QP+Q AS LA A P++Q+ +LGE L+PL+ +
Sbjct: 523 YKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTM 582
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 583 HSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/626 (46%), Positives = 390/626 (62%), Gaps = 55/626 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQREAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQP 548
G P +P GVP + PY QP
Sbjct: 469 GNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQP 525
Query: 549 MQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 526 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 NSELLHMLESPESLRSKVDEAVAVLQ 611
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/626 (46%), Positives = 391/626 (62%), Gaps = 55/626 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQP 548
G P +P GVP + PY QP
Sbjct: 469 GNA---PASRGLPTTTQRVGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQP 525
Query: 549 MQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 526 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 NSELLHMLESPESLRSKVDEAVAVLQ 611
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 290/629 (46%), Positives = 384/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/643 (45%), Positives = 393/643 (61%), Gaps = 77/643 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQSG-PRPALR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTG----------ALASALANASPEQQRTLLGENLYPLVDQ 580
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 580
Query: 581 LEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 623
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/626 (46%), Positives = 389/626 (62%), Gaps = 55/626 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQP 548
G P +P GVP + PY QP
Sbjct: 469 GNA---PASRGLPTTAQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQP 525
Query: 549 MQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 526 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 NSELLHMLESPESLRSKVDEAVAVLQ 611
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 290/629 (46%), Positives = 384/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++ KSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/626 (46%), Positives = 390/626 (62%), Gaps = 55/626 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQP 548
G P +P GVP + PY QP
Sbjct: 469 GNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQP 525
Query: 549 MQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 526 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 NSELLHMLESPESLRSKVDEAVAVLQ 611
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/619 (47%), Positives = 388/619 (62%), Gaps = 41/619 (6%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGG-----YFMPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQ-----PGQQNQRPGGRRSGTGPMQQAQQPIPLMQP 499
+P + Y + MRPN P Q G Q R+SG P + P Q
Sbjct: 418 SRPTY-YAPNQMAQMRPN---PRWQQAGRLQGFQGMPNAMRQSGPRPALRHLTPAGNAQA 473
Query: 500 -RMLPRG--RIYRYPPGCNI-PDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA-- 553
R LP R+ P N+ P PVA +P PY QP+Q
Sbjct: 474 SRGLPAAPQRVGVPPAAQNLAPRAPVAAATPRAVP-PYKYASNVRSPHPAIQPLQAPQPA 532
Query: 554 ---------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+
Sbjct: 533 VHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHM 592
Query: 605 LESPEALKAKVAEAMEVLR 623
LESPE+L++KV EA+ VL+
Sbjct: 593 LESPESLRSKVEEAVAVLQ 611
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 308/693 (44%), Positives = 403/693 (58%), Gaps = 111/693 (16%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 106
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 107 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCK 166
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 167 VAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 226
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KNL + +E++ +++F +FG ITS + RD +GKS+ FGFVN+ D A +V
Sbjct: 227 NFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAV 286
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D I D+
Sbjct: 287 DEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 346
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+E+F+ +GTITS KVMRD N
Sbjct: 347 KLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 359 -------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
G S+G GFV FS+ +EASKA+TEMN +M+ KPLYVALAQRK+ RR+
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRS 466
Query: 406 RLQFS-QMRPPVG----------PRMPMYPPVAPGLGQQLFY--GQ-GPPIIPPQPGFGY 451
+L+ S Q R + P+ M P V G GQQ F GQ G PQPG
Sbjct: 467 QLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGGLPFAPQPGM-- 524
Query: 452 QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA----QQPIPL--MQPRMLPRG 505
VPG RP + P PGQQ GGR G GP QQ Q IP+ M P +P G
Sbjct: 525 -MMGVPGGRPGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFAQGIPMGAMGPGGIPNG 576
Query: 506 RIY------RYPPGC----NIPDVPVAG---------------VPGGMLPGPYDIG--GM 538
Y ++ G +P +P+ V G M PG G
Sbjct: 577 MGYPQMGQVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGVPVQGQMRPGQGGRGQNAQ 636
Query: 539 PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
P P G A +LA A QQ+ +LGE LYP + + + A K+TGMLLEMD
Sbjct: 637 PAAGRGEEAPA-AGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDN 695
Query: 599 TEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TE+L LLE EAL+AKV EA+ V + + T
Sbjct: 696 TELLSLLEDDEALRAKVDEALSVYDEYMKNKGT 728
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 296/642 (46%), Positives = 394/642 (61%), Gaps = 74/642 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
LYVALAQRKEER+A L M+ G R +P A + Q G +P P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALP-----ANAILNQFQPAAGGYFVPAVP--- 414
Query: 451 YQQQLVPGMRPNYFVP----MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
Q Q RP Y+ P ++P + Q+ GGR G M A I PR R
Sbjct: 415 -QAQ----GRPPYYTPNQLAQIRPNPRWQQ-GGRPQGFQGMPSA---IRQSGPRPALR-- 463
Query: 507 IYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP---------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 -HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAP 522
Query: 540 --FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVDQL 581
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+ +
Sbjct: 523 YKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTM 582
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 583 HSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/626 (46%), Positives = 389/626 (62%), Gaps = 55/626 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPALR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQP 548
G P +P GVP + PY QP
Sbjct: 469 GNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQP 525
Query: 549 MQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 526 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 NSELLHMLESPESLRSKVDEAVAVLQ 611
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/626 (46%), Positives = 389/626 (62%), Gaps = 55/626 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQP 548
G P +P GVP + PY QP
Sbjct: 469 GNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQP 525
Query: 549 MQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 526 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 NSELLHMLESPESLRSKVDEAVAVLQ 611
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 293/638 (45%), Positives = 392/638 (61%), Gaps = 67/638 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L+D F+ G V+S+RVCRDL TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLD+SIDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDLIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E +E+ L+ +F +FG ITS VM DGKSK FGFV F+ P+ A +V+A
Sbjct: 192 TNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDA 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK +FE E ++++G+NLYVKNLDD+I D++
Sbjct: 252 LNGKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGI-------SRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
L++ F+ FGTITS KVM + N S+G GFV FS+ EEA+KA+TEMNG++V SK
Sbjct: 312 LRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 371
Query: 391 PLYVALAQRKEERRARLQFSQMRPPVGPRM-------------PMYPPVAPGLGQQLFYG 437
PLYVALAQRKE+R+A L M+ RM + P P Q+ F G
Sbjct: 372 PLYVALAQRKEDRKAHLTSQYMQRMANMRMHQMGHQFMPPGPSSYFVPTIP-TAQRYFTG 430
Query: 438 QGPPIIP--PQPGFGYQQQLVPGMR-------PNYFVPMVQPGQQNQRPGGRRSGTG--- 485
G + P P + Q + PG + N + P +P Q P R+ G
Sbjct: 431 -GTQLTPIRSNPRWAAQTPIRPGAQGGTAAYMANSYRPSARPPNQ---PMAMRNNIGLGN 486
Query: 486 ---PMQQAQQPIPLMQPRMLP----------RGRIYRYPPGCNIPDVPVAGVPGGMLPGP 532
P+ QQP P MQ R L R ++Y P + +P +
Sbjct: 487 VPRPI-TGQQP-PNMQGRPLAGQQVVVATGSRAATFKYTSNMRNPPQAMGTMPATPVQQA 544
Query: 533 YDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGM 592
I G Q A+ LA A P++Q+ +LGE L+PL+ ++ D A K+TGM
Sbjct: 545 VHIQG------------QEPLTATMLAAAQPQEQKQMLGERLFPLIQRMYADLAGKITGM 592
Query: 593 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQA 630
LLE+D TE+LH+LE E+LK KV EA+ VL+ +QA
Sbjct: 593 LLEIDNTELLHMLEHNESLKNKVEEAVAVLQAHQAKQA 630
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 287/625 (45%), Positives = 389/625 (62%), Gaps = 37/625 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++F ++G S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + ++ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD + D++L
Sbjct: 251 MNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQ-- 453
RKEER+A L M+ R P+ P P F P + Q
Sbjct: 370 RKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYSANQLA 429
Query: 454 QLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPG 513
QL PG P + V+P P R P QP+ ++ ++ R
Sbjct: 430 QLRPG--PRWATQGVRPQHFQNMPNAMR----PTAPRPQPLNTIRAAATTNTQVPRMMAS 483
Query: 514 CNIPDVPVAGVPGGMLPGPYDIGGMP-FRDAA---------FSQP---MQTGAL------ 554
IP V P + MP ++ AA SQP MQ A+
Sbjct: 484 QRIPTQAVNQRPANASAAAAPVRAMPQYKYAAGVRNTQQHMASQPQVTMQQPAVHVQGQE 543
Query: 555 ---ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L
Sbjct: 544 PLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESL 603
Query: 612 KAKVAEAMEVLRNVAQQQATGPSPT 636
++KV EA+ VL+ ++A S T
Sbjct: 604 RSKVDEAVAVLQAHQAKEAAQKSST 628
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/610 (45%), Positives = 386/610 (63%), Gaps = 54/610 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRDL TRRSLGY YVN+
Sbjct: 7 AANYPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGH 66
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF P+ G+P RIM+ RDP++RKSG GNIFIKNLDKSIDNK+L+DTFS FGN
Sbjct: 67 AEKALDTMNFDPIKGRPCRIMWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFGN 126
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ES 211
ILSCK+A D LG +GYGFV F+ E++A AI +++GMLLNDK+VFVG ++ K+ER +
Sbjct: 127 ILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKM 186
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+F NVYVKN + ++ +K+I E G I S VM D +GKSK FGFV+F+ P++
Sbjct: 187 GTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEE 246
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V LNGK+ + + G+A+K+ ER E+K + E+ +E ++F+G+NLY+KNLDD
Sbjct: 247 AEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDD 306
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L+E FS +GTI+S KVM+D G S+G GFV FS+ EEA+KA+TEMNG++++SKP
Sbjct: 307 PIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKP 366
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 451
LYVALAQR+EER+A+L M G RM GQ+ F+ P + P+ G
Sbjct: 367 LYVALAQRREERKAQLAAQHMHRISGLRMHQ--------GQRPFFTPQMPQVRPRWGMPP 418
Query: 452 QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM---LPRGRIY 508
QQQ MRP M G Q P G +G M P+ Q RM P+ + Y
Sbjct: 419 QQQQQ-QMRPTGVQNM---GGQAGMPQGGPAGMPRM-------PVQQARMGGVPPQRQPY 467
Query: 509 RY-------PPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANA 561
++ PP +P+ G+PGG +P+ S LA A
Sbjct: 468 KFSQTVRNPPPAGQMPE-GGQGIPGG------------------QEPLN----PSVLAAA 504
Query: 562 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
+P++Q+ +LGE L+PL+ D A K+TGMLLE+D E+LH+LES +AL+ KV EA+ V
Sbjct: 505 TPQEQKQMLGERLFPLIQTNHPDMAGKITGMLLEIDNAELLHMLESRDALQMKVDEAVSV 564
Query: 622 LRNVAQQQAT 631
LR +++T
Sbjct: 565 LRAHQAKEST 574
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 293/644 (45%), Positives = 396/644 (61%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARL--QFSQ----MRP-PVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L Q+ Q MR P + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQSG-PRPTLR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 579
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 297/628 (47%), Positives = 390/628 (62%), Gaps = 49/628 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A ++V
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDSI D++
Sbjct: 252 LNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALA
Sbjct: 312 LRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRMP-MYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQQQL 455
QRKE+R+A L M+ RM M PG F P IP PQ +G Q
Sbjct: 371 QRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFV----PTIPQPQRFYGPAQMA 426
Query: 456 VPGMRPNYFVPMVQPGQQNQ-RPGGR--RSGTGPMQ---QAQQPIPLMQPRMLPRGRIYR 509
P + P Q NQ RP + SG MQ +A P Q + R +
Sbjct: 427 QIRTTPRW------PAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQAGTM-RNTLSA 479
Query: 510 YP-------PGCNIPDV----PVAGVPGGMLPGPYDIGG--------------MPFRDAA 544
P G N+ + P GV P Y P + A
Sbjct: 480 RPITGQQAVGGANMQNRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAMAIPAPTPVQQAV 539
Query: 545 FSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
Q Q AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+
Sbjct: 540 HIQG-QEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHM 598
Query: 605 LESPEALKAKVAEAMEVLRNVAQQQATG 632
LE E+LKAKV EA+ VL+ +QA
Sbjct: 599 LEHNESLKAKVEEAVAVLQAHQAKQAVA 626
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 292/644 (45%), Positives = 391/644 (60%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++QA P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQA-GPRPTLR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 579
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/644 (45%), Positives = 393/644 (61%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 579
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/644 (45%), Positives = 393/644 (61%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQREAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 579
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 290/637 (45%), Positives = 386/637 (60%), Gaps = 67/637 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRDL TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D GQS+GYGFV F+ EESA ++I+K+NGMLLN+K+VFVG F+ ++ERE +K + F
Sbjct: 132 QDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E TE+ L ++F ++G ITS VM DGKS+ FGFV F++PD A R+V+
Sbjct: 192 TNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMK-DGKSRGFGFVAFENPDAAERAVQE 250
Query: 279 LNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LN K+ D K YVG+AQKK ER+MELK +FEQ E ++ G+NLYVKNLDD+I D++
Sbjct: 251 LNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDER 310
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ +GTITS KVM D G S+G GFV FS +EA+KA+TEMNG++V SKPLYVALA
Sbjct: 311 LRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALA 369
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPV--------APGLGQ-QLFYGQGPPIIPPQPG 448
QRKEER++ L ++ RM V P + Q Q FYG + P
Sbjct: 370 QRKEERKSHLASQYIQRVNSLRMQHIGQVYQQSGSYFMPTIAQPQRFYGPQVAQVRTAPR 429
Query: 449 FGYQQQLVPGMRPNYFVPMVQPG--------------QQNQRPGGRRSG----------- 483
+ Q+ P N V P Q ++ G R G
Sbjct: 430 WSANAQMRPNA-ANQSVAANAPAGAYQAMSAAAHAANNQYRQAGNVRGGANQQAQNAQSA 488
Query: 484 ---TGPMQQAQQPIPLMQP--------------RMLPRGRIYRYPPGCNIPDVPVAGVPG 526
+ M+ + +PI QP PR + Y+Y P VP
Sbjct: 489 QATSAAMRNSARPITGQQPGANMQTRPVAPQMTAAQPRPQSYKYTANMRNPQVP------ 542
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
+P P +P+ AS LA A P +Q+ +LGE L+PL++ +
Sbjct: 543 QQVPIPLQQVNQQAVIVKGQEPL----TASMLAAAQPAEQKNMLGERLFPLIEAMHPQLT 598
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL+
Sbjct: 599 GKITGMLLEIDNSELLHMLEHHESLKAKVEEAVAVLQ 635
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V D RS G+G+V ++A EAT
Sbjct: 291 RYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEG--RSKGFGFVCFSAPDEAT 348
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
+A+ E+N + KP+ + + R RKS + +I+ ++
Sbjct: 349 KAVTEMNGRIVGSKPLYVALAQRKEE-RKSHLASQYIQRVN 388
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/644 (45%), Positives = 392/644 (60%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 579
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/644 (45%), Positives = 392/644 (60%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 579
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 293/644 (45%), Positives = 395/644 (61%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARL--QFSQ----MRP-PVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L Q+ Q MR P + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQSG-PRPALR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVATAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 579
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 289/618 (46%), Positives = 380/618 (61%), Gaps = 54/618 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY F+ GQ++S+RVCRD+ TRRSLGY Y+N+ +A ALD
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + LK IF EFG S VM D G+S+ FGFVNF + DA R+V
Sbjct: 191 TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ +GTITS KVM D G SRG GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPM--------YPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + + +R GP +P Y P + + FY P +
Sbjct: 370 RKEERKAILTNQYIQRLASIRAIPGPAIPTTYQQGSGYYMTSVPQV--RSFYN-AVPNLR 426
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ--PRML 502
P P + +Q G P FV P +RP + ++QA +P + RM
Sbjct: 427 PAPRWAFQAPRTQGPFPAQFVRQAVP----RRPS---TTISTVRQASTQVPHINNTQRMA 479
Query: 503 PRG----------------RIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAF 545
G Y+Y G N+ V A P P + + A
Sbjct: 480 NIGTQTAGGRAAGTAVRGVSQYKYSAGVRNVQQVINA-------PAPVVHQVVQNTEPAV 532
Query: 546 SQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
Q AS LA A ++Q+ LLGE LYPL+ L A K+TGMLLE+D +E+LH+L
Sbjct: 533 HMKGQEPLTASMLAAAPLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHML 592
Query: 606 ESPEALKAKVAEAMEVLR 623
ESPE+L AKV EA+ VL+
Sbjct: 593 ESPESLHAKVEEAVAVLQ 610
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 290/629 (46%), Positives = 384/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSID KAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/626 (46%), Positives = 389/626 (62%), Gaps = 55/626 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNK L+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM---------------LPGPYDIGGMPFRDAAFSQP 548
G P +P GVP + PY QP
Sbjct: 469 GNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQP 525
Query: 549 MQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
+Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D
Sbjct: 526 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 NSELLHMLESPESLRSKVDEAVAVLQ 611
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 293/644 (45%), Positives = 394/644 (61%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARL--QFSQ----MRP-PVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L Q+ Q MR P + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQSG-PRPALR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQTLAPRAAVAAAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 579
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 293/644 (45%), Positives = 394/644 (61%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARL--QFSQ----MRP-PVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L Q+ Q MR P + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQSG-PRPALR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 579
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 290/618 (46%), Positives = 392/618 (63%), Gaps = 48/618 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RAL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEG 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E +++ L+++F ++G ITS VM DG S+ FGFV F+DPD A R+
Sbjct: 192 TNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACME 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDD+I D++
Sbjct: 252 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 312 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 370
Query: 398 QRKEERRARL--------------QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPI- 442
QRKE+R+A L Q Q+ P G P + P Q FYG
Sbjct: 371 QRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGTGGYFVPTIPPA---QRFYGPAQMTQ 427
Query: 443 IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML 502
I P P + Q P +RPN N +P R + GP Q A + M R +
Sbjct: 428 IRPSPRWTAQ----PAVRPN--AQSAASAYPNMQPPFRPAPRGPAQAALRSS--MGARPI 479
Query: 503 PRGRIYRYPPGCNIPDVPVAGVPGGML--------PGPYDIGGMPFRDAAFSQPMQTGAL 554
+ P VP +G P G P P P +P+ T
Sbjct: 480 TGQQGVATAASIRAPIVPQSGRPAGYKYTSNMRNPPAP-----QPAVHIQGQEPLTT--- 531
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
+ LA A ++Q+ +LGE L+PL+ ++ D A K+TGMLLE+D +E+LH+LE E+LKAK
Sbjct: 532 -TMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAK 590
Query: 615 VAEAMEVLR-NVAQQQAT 631
V EA+ VL+ + A+QQAT
Sbjct: 591 VDEAVAVLQAHQAKQQAT 608
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V L RS G+G+V +++ EAT
Sbjct: 292 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEAT 349
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 350 KAVTEMNGRIVGTKPLYVALAQR 372
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 289/628 (46%), Positives = 389/628 (61%), Gaps = 57/628 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++ + P
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR-HLAPT 468
Query: 505 GRIYRYPPGCNIPDVP-VAGVPGGM-----------------LPGPYDIGGMPFRDAAFS 546
G P +P GVP + PY
Sbjct: 469 GNA---PASRGLPTTTQRVGVPTAVQNLAPRAAVAAATAAPRAVAPYKYASSVRSPHPAI 525
Query: 547 QPMQTGALA-----------SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLE 595
QP+Q A S LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE
Sbjct: 526 QPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLE 585
Query: 596 MDQTEVLHLLESPEALKAKVAEAMEVLR 623
+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 IDNSELLHMLESPESLRSKVDEAVAVLQ 613
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/630 (45%), Positives = 396/630 (62%), Gaps = 49/630 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ +G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+P+RIM+S RDP++RKSG GN+FIKNLD+SIDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDILKGRPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D GQS+GYGFV F+ E+SA +I+K+NGMLLN K+VFVG F+ +++RE + +
Sbjct: 123 QDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLY 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN+ E + +L ++F ++G ITS VM DG S+ FGFV F+DP++A ++V
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTE 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+GK+ + K +YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D++
Sbjct: 243 LHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM D +G S+G GFV FS+ EEA+KA+T+MNG++V +KPLYVALA
Sbjct: 303 LRKEFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVALA 361
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPPVA------PGLGQ-QLFYGQGPPI-IPP 445
QRKE+R+A L ++ RM P+Y P A P + Q Q FYG I P
Sbjct: 362 QRKEDRKAHLDSQYLQRNTNMRMQSIGPIYQPGASSGYFVPTIPQPQRFYGPTQMTQIRP 421
Query: 446 QPGFGYQQQLVPGM-------RPNYFVPMVQPGQQNQRPGGRRSGTG----------PMQ 488
QP + Q Q+ G PN G + P G+++ P+
Sbjct: 422 QPRWASQPQVRAGTPQAAAAGYPNMATQYRNIGARAPVPAGQQAALARNAMVDRNARPIS 481
Query: 489 QAQQPIP-------LMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPG--PYDIGGMP 539
AQQ +P + P G Y+Y P G+ G PG P +
Sbjct: 482 TAQQQMPGAVAAGGVRVPGARGTGSGYKYTANMRNPPGQAQGM-GQAQPGQPPAPV---- 536
Query: 540 FRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQT 599
AA Q A+ LA A PE Q+ +LGE L+PL+ ++ + K+TGMLLE+D +
Sbjct: 537 --QAAVHVHGQEPLTATMLATAKPEDQKQMLGERLFPLIQRMYPELTGKITGMLLEIDNS 594
Query: 600 EVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
++LH+LE E+LK KV E + VL+ QQ
Sbjct: 595 DLLHMLEHHESLKNKVEEVVAVLQAHQAQQ 624
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 104/193 (53%), Gaps = 21/193 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRAL 98
T++Y+ ++D +VND +L+++F + G + S +V RD + R G+G+V + EA +A+
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSR--GFGFVAFEDPEEAEKAV 240
Query: 99 DELNFTPL-NGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
EL+ GK R Y+ + + N+++KNLD +ID+
Sbjct: 241 TELHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKNLDDTIDD 300
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
+ L FS FG I S KV D G+S+G+GFV F + E A A+ +NG ++ K ++V
Sbjct: 301 ERLRKEFSVFGTITSAKVMMDD-GRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVA 359
Query: 202 PFLRKQERESTAD 214
RK++R++ D
Sbjct: 360 LAQRKEDRKAHLD 372
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F+ G + S +V D RS G+G+V +++ EAT
Sbjct: 283 RYQGVNLYVKNLDDTIDDERLRKEFSVFGTITSAKVMMDDG--RSKGFGFVCFSSPEEAT 340
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ ++N + KP+ + + R
Sbjct: 341 KAVTDMNGRIVGTKPLYVALAQR 363
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 290/644 (45%), Positives = 391/644 (60%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPALR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMPFRDAAFS------------- 546
+ P G PD AG L GG+P + +
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQSLAPRAAVAAAAPRAV 520
Query: 547 ----------------QPMQTGALA-----------SALANASPEQQRTLLGENLYPLVD 579
QP+Q A S LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAMQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 289/622 (46%), Positives = 389/622 (62%), Gaps = 40/622 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSC+VA
Sbjct: 72 MNFDIIKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCRVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DP+ A R+V
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVAD 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D++
Sbjct: 252 LNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + +G S+G GFV FS AEEA+KA+TEMNG++V SKPLYVALA
Sbjct: 312 LRKEFAPFGTITSVKVMME-DGRSKGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVALA 370
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQQQLV 456
QRKE+R+A L ++ RM V G ++ P +P PQ +G Q
Sbjct: 371 QRKEDRKAHLASQYLQRVANIRMQHMGQVFQAGGAGSYF---VPTLPQPQRFYGPAQMAQ 427
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQ---QAQQPIPLMQPRMLPRGRIYR---- 509
P + QP + N + G S MQ +A P Q M R
Sbjct: 428 IRTTPRW---PAQPVRPNAQAAG--SNFATMQTPFRAAPRAPTAQSSMARNALSARPITG 482
Query: 510 ---YPPGCNIPDVPVAGVPGGMLPGPYD-----IGGMPFRDAAFSQPMQTGA-------- 553
P N+ + +AG G+ P M + P QT A
Sbjct: 483 QQAVPGAANMQNRSMAGPAVGVSPQSRTSNYKYTANMRNPPQTMAMPAQTPAQQAVHIQG 542
Query: 554 ----LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
AS LA+A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE E
Sbjct: 543 QEPLTASMLADAPPQEQKQMLGERLFPLIQCMYPHLTGKITGMLLEIDNSELLHMLEHGE 602
Query: 610 ALKAKVAEAMEVLRNVAQQQAT 631
+LKAKV EA+ VL+ +QA
Sbjct: 603 SLKAKVEEAVAVLQAHQAKQAV 624
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/638 (44%), Positives = 384/638 (60%), Gaps = 75/638 (11%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDLD + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A R
Sbjct: 9 YPCASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAER 68
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FGNILS
Sbjct: 69 ALDTMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILS 128
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA D G S+G+GFV F+ +E+A A+ K+NGM+LN K+V+VG F+ + ER + +
Sbjct: 129 CKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSERLAAMGEA 188
Query: 217 --RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
RF N+YVKN + +D L+ F ++G + S VM D G S+ FGFV++++PD A +
Sbjct: 189 QKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGK 248
Query: 275 SVEALNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+ E +N + DD + YVG+AQKK ER+ ELK KFE+ +E +++G+NLYVKNLD +I
Sbjct: 249 ACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKNLDSTI 308
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
++ L++ FS+FGTITS KVM + NG S+G GFV FS+ EEA+KA+TEMNG++VVSKPLY
Sbjct: 309 DEEILRKEFSQFGTITSSKVMTE-NGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLY 367
Query: 394 VALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQG-------PPIIPPQ 446
VALAQRKE+R+A+L M+ G RMP P Q+F G P P Q
Sbjct: 368 VALAQRKEDRKAQLASQYMQRMAGMRMPAPQP------NQMFQGSSYFMPSMQPRYFPSQ 421
Query: 447 -------PGFGYQQQLVPGMRPNYFVPMVQPGQQ-------------------------N 474
P + + PG + F M G +
Sbjct: 422 MAQVRASPRWQQAAPMRPGGQATAFQAMPAAGSRFPAATAPRAAAAAVRQVAPQAMARTT 481
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
Q P R +G QQP P Y+Y P P G P M P
Sbjct: 482 QPPAQRMAGRVAAMANQQPRPG-----------YKYTATMRNP--PSGGQPQAMNPSAVH 528
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
+ G Q ++ LA A P++Q+ +LGE L+PL+ D A K+TGMLL
Sbjct: 529 VQG------------QEPLTSTMLAAAPPQEQKQMLGERLFPLIQNSHPDLAGKITGMLL 576
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR-NVAQQQAT 631
E+D E+LH+LES E+LKAKV EA+ VL+ + A++QA
Sbjct: 577 EIDNAELLHMLESRESLKAKVEEAVAVLQAHQAKEQAA 614
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 296/633 (46%), Positives = 387/633 (61%), Gaps = 50/633 (7%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR- 217
A D G S+GYGFV F+ EE+A +IDK+NGMLLN K+V+VG F+ ++ERE +K +
Sbjct: 131 AQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A ++V
Sbjct: 191 FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 278 ALNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LNGK + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D+
Sbjct: 251 ELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDE 310
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG++V SKPLYVAL
Sbjct: 311 RLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVAL 369
Query: 397 AQRKEERRARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQQQ 454
AQRKE+R+A L M+ RM M PG F P +P PQ +G Q
Sbjct: 370 AQRKEDRKAHLASQYMQRMANVRMQQMGQIFQPGNAGSYFV----PTLPQPQRFYGPAQM 425
Query: 455 LVPGMRPNYFVPMVQPGQQNQ-RPGGR--RSGTGPMQQAQQPIPLMQPRMLP---RGRIY 508
P + P Q NQ RP + SG MQ A P R +
Sbjct: 426 AQIRATPRW------PAQPNQVRPNAQTGNSGFASMQSAPFRAAPRAPAAQAGALRNSMS 479
Query: 509 RYP-------PGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGAL------- 554
P G N+ +AG G+ PG + + P AL
Sbjct: 480 ARPITGQQAVGGANMQSRSMAGPAVGVSPGQSRPPNYKYTANMRNPPQTAMALPAPSGPS 539
Query: 555 --------------ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTE 600
AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E
Sbjct: 540 VQQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPSLTGKITGMLLEIDNSE 599
Query: 601 VLHLLESPEALKAKVAEAMEVLRNVAQQQATGP 633
+LH+LE E+LKAKV EA+ VL+ +QA P
Sbjct: 600 LLHMLEHNESLKAKVEEAVAVLQAHQAKQAVAP 632
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 289/618 (46%), Positives = 379/618 (61%), Gaps = 54/618 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY F+ GQ++S+RVCRD+ TRRSLGY Y+N+ +A ALD
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + LK IF EFG S VM D G+S+ FGFVNF + DA R+V
Sbjct: 191 TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ +GTITS KVM D G SRG GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPM--------YPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + + +R GP +P Y P + + FY P +
Sbjct: 370 RKEERKAILTNQYIQRLASIRAIPGPAIPTTYQQGSGYYMTSVPQV--RSFYN-AVPNLR 426
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ--PRML 502
P P + Q G P FV P +RP + ++QA +P + RM
Sbjct: 427 PAPRWASQAPRTQGPFPAQFVRQAVP----RRPS---TTISTVRQASTQVPHINNTQRMA 479
Query: 503 PRG----------------RIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAF 545
G Y+Y G N+ V A P P + + A
Sbjct: 480 NIGTQTAGGRAAGTAVRGVSQYKYSAGVRNVQQVINA-------PAPVVHQVVQNTEPAV 532
Query: 546 SQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
Q AS LA A ++Q+ LLGE LYPL+ L A K+TGMLLE+D +E+LH+L
Sbjct: 533 HMKGQEPLTASMLAAAPLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHML 592
Query: 606 ESPEALKAKVAEAMEVLR 623
ESPE+L AKV EA+ VL+
Sbjct: 593 ESPESLHAKVEEAVAVLQ 610
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 289/620 (46%), Positives = 384/620 (61%), Gaps = 52/620 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLY+GDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++R+SG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAKARE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEF-GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KN + ++ L++ F ++ G S VM D GKSK FGFV+F+ +DA ++V
Sbjct: 190 FTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ +N K+ + + YVG+AQKK ER+ ELK KFE +E K++G+NLYVKNLDD+I+D+
Sbjct: 250 DEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDE 309
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L + FS FGTITS KVM + G SRG GFV FS+ EEA+KA+TEMNG+++ SKPLYVAL
Sbjct: 310 RLWKEFSPFGTITSAKVMME-EGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL 368
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVA------PGLGQQLFYGQGPPIIPPQPGFG 450
AQRKEER+ L M+ G M PP A P F P + +
Sbjct: 369 AQRKEERKMHLTSQFMQRLAG--MRAVPPSAIIGQYQPAAASGYFMAAMPQQAQGRTAYY 426
Query: 451 YQQQLVPGMRPNYFVPM-VQPGQQNQRPGGRRSGTGPMQQ-AQQP-------------IP 495
+ P MRPN P+ V+P Q G ++ TGPM+Q A +P +P
Sbjct: 427 TPSPMAP-MRPNPRWPLQVRP--QGAHAAGFQAITGPMRQPAPRPTQMRTVNPASVPQVP 483
Query: 496 LMQPRMLPRGRI------------YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDA 543
M+PR Y+Y P P PG M P +
Sbjct: 484 RASQGMMPRPTFPTQAAGPRALPGYKYTGSVRNPQQPGVQGPGAMQQAP---------QS 534
Query: 544 AFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLH 603
A Q AS LA A P +Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH
Sbjct: 535 AVHIQGQEPLTASMLAAAPPHEQKQMLGERLFPLIHGMYPTLAGKITGMLLEIDNSELLH 594
Query: 604 LLESPEALKAKVAEAMEVLR 623
+LESPE+L+AKV EA+ VL+
Sbjct: 595 MLESPESLRAKVEEAVAVLQ 614
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++ND +L+ F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 291 KYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVM--MEEGRSRGFGFVCFSSPEEAT 348
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK + F++ L
Sbjct: 349 KAVTEMNGRIIGSKPLYVALAQRKEE-RKMHLTSQFMQRL 387
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 318/727 (43%), Positives = 409/727 (56%), Gaps = 123/727 (16%)
Query: 14 VAAQPSPA--TNGIANNG---------GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
+ P+PA TNG +N Q S SLYVG+LD SV ++ LY+LF+
Sbjct: 5 TSTTPAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSS 64
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+GQV S+RVCRD TRRSLGY YVNYN RALDELN+T + GKP RIM+S RDP +
Sbjct: 65 IGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPAL 124
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAAN 184
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFG 240
+AI +NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ +++ +K+F
Sbjct: 185 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFE 244
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+FG ITS + RD++GKS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ER
Sbjct: 245 KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHER 304
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD---- 356
E EL+ ++E + E A K++G+NLYVKNL D + DDKL+ELF +GTITS KVMRD
Sbjct: 305 EEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPV 364
Query: 357 -----------------------------------------------PNGISRGSGFVAF 369
P G S+G GFV F
Sbjct: 365 ETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCF 424
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVGPRMP------- 421
S+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R + +
Sbjct: 425 SSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMG 484
Query: 422 ---MYPPVAPGLGQQLFY--GQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQR 476
M P V G GQQ F Q + PPQPG PG P F PGQQ
Sbjct: 485 QAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGPF-----PGQQ--- 536
Query: 477 PGGRRSGTGPMQQAQ---QPIPL--MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG---- 527
GGR G GP QQ Q +P+ MQ +P G Y G VPG
Sbjct: 537 -GGR--GVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGPM 593
Query: 528 ----------------MLPGPYDIGGMPFRDAAFSQP---MQTGAL-ASALANASPEQQR 567
M PG GG R A QP G L A AL+ A P+QQ+
Sbjct: 594 RGGYGGGRGGVPLGGQMRPGQ---GG---RGQAVGQPGPETPVGVLTAQALSAAPPQQQK 647
Query: 568 TLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 627
+LGE LYP + + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V +
Sbjct: 648 QMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMK 707
Query: 628 QQATGPS 634
++ P+
Sbjct: 708 NKSDEPA 714
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 289/618 (46%), Positives = 392/618 (63%), Gaps = 48/618 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RAL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEG 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTF+ FGNILSCKVA
Sbjct: 72 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E +++ L+++F ++G ITS VM DG S+ FGFV F+DPD A R+
Sbjct: 192 TNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACME 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDD+I D++
Sbjct: 252 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 312 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 370
Query: 398 QRKEERRARL--------------QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPI- 442
QRKE+R+A L Q Q+ P G P + P Q FYG
Sbjct: 371 QRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGTGGYFVPTIPPA---QRFYGPAQMTQ 427
Query: 443 IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML 502
I P P + Q P +RPN N +P R + GP Q A + M R +
Sbjct: 428 IRPSPRWTAQ----PAVRPN--AQSAASAYPNMQPPFRPAPRGPAQAALRSS--MGARPI 479
Query: 503 PRGRIYRYPPGCNIPDVPVAGVPGGML--------PGPYDIGGMPFRDAAFSQPMQTGAL 554
+ P VP +G P G P P P +P+ T
Sbjct: 480 TGQQGVATASSIRAPIVPQSGRPAGYKYTSNMRNPPAP-----QPAVHIQGQEPLTT--- 531
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
+ LA A ++Q+ +LGE L+PL+ ++ D A K+TGMLLE+D +E+LH+LE E+LKAK
Sbjct: 532 -TMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAK 590
Query: 615 VAEAMEVLR-NVAQQQAT 631
V EA+ VL+ + A+QQAT
Sbjct: 591 VDEAVAVLQAHQAKQQAT 608
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V L RS G+G+V +++ EAT
Sbjct: 292 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEAT 349
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 350 KAVTEMNGRIVGTKPLYVALAQR 372
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 294/622 (47%), Positives = 383/622 (61%), Gaps = 65/622 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK+ F ++G S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 251 MNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPG 458
RKEER+A L M+ G R L Q P PG GY VP
Sbjct: 370 RKEERKAHLTNQYMQRIAGMR---------ALPANTLINQ----FQPAPG-GYFVPAVPQ 415
Query: 459 M--RPNYFVP--MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 514
RP Y+ P M Q RPG R TG Q QP+P PR + PP
Sbjct: 416 TQSRPTYYAPNHMAQI-----RPGPRWQQTG-RPQGFQPMPNTLRHSGPRQSLRHMPPSN 469
Query: 515 -----NIPDVP-VAGVPGGM----------------LPGPYDIGGMPFRDAAFSQPMQTG 552
IP V GV +P PY P QP+Q
Sbjct: 470 AQGTRGIPGVTQRVGVSSSTQTMGPRPPVSAPPPRAVP-PYKYTRCPL---PVVQPLQAP 525
Query: 553 A-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+
Sbjct: 526 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSEL 585
Query: 602 LHLLESPEALKAKVAEAMEVLR 623
LH+LESPE+L++KV EA+ VL+
Sbjct: 586 LHMLESPESLRSKVEEAVAVLQ 607
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 348 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRI 386
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 291/643 (45%), Positives = 389/643 (60%), Gaps = 72/643 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQIT 429
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP------ 495
+ P P + Q G RP+ F M PG RP R M+ A +
Sbjct: 430 QLRPSPRWAAQ-----GARPHPFQNM--PGA--IRPTAPRPPFSTMRPASSQVTRVMSTQ 480
Query: 496 --------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGP-YDIG 536
M PR P R Y+Y G P + P + P +
Sbjct: 481 RVANTSTQTMGPRPAAAAAAATPAVRTVSQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQ 540
Query: 537 GMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEM 596
G +P+ LAS A P++Q+ +LGE L+PL+ + A K+TGMLLE+
Sbjct: 541 G--------QEPLTASMLAS----APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEI 588
Query: 597 DQTEVLHLLESPEALKAKVAEAMEVL-----RNVAQQQATGPS 634
D +E+LH+LESPE+L++KV EA+ VL + AQ+ P+
Sbjct: 589 DNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPA 631
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/614 (46%), Positives = 382/614 (62%), Gaps = 43/614 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK+ FG++G S VM D GKS+ FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR---------PPVGPRMPMYPP-------VAPGLGQQLFYGQGPPI 442
RKEER+A L M+ P + P P PP + P + +Y G
Sbjct: 370 RKEERQAHLTNQYMQRMASVRVPNPVINPYQP--PPSSYFMAAIPPAQNRAAYYPPGQIA 427
Query: 443 -IPPQPGFGYQ-------QQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPI 494
+ P P + Q Q + +RP+ P P RP S + AQ+
Sbjct: 428 QLRPSPRWTAQGARPHPFQNMAGAIRPSAPRP---PTFSTMRPT---SQVPRVMSAQRVA 481
Query: 495 PLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM----- 549
M PR + VP G+ + P A QP
Sbjct: 482 NTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNTQQHLNTQP--QVAMQQPAVHVQG 539
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
Q AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 540 QEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPE 599
Query: 610 ALKAKVAEAMEVLR 623
+L++KV EA+ VL+
Sbjct: 600 SLRSKVDEAVAVLQ 613
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 287/634 (45%), Positives = 390/634 (61%), Gaps = 58/634 (9%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V+++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A R
Sbjct: 8 YPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL DTFS FGNILS
Sbjct: 68 ALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ ++A+ AIDK+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E + LK++FG+FG S VM D G SK FGFVNF+ +DA +
Sbjct: 187 AKEFTNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+VE +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I
Sbjct: 247 AVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G ++G GFV FS+ EEA+KA+TEMNG++V +KPLY+
Sbjct: 307 DERLRKEFSPFGTITSAKVMME-GGRNKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYI 365
Query: 395 ALAQRKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 451
ALAQRKEER+A L M+ R P+ P P G ++ P +P +
Sbjct: 366 ALAQRKEERQAHLTNQYMQRMASIRAVPNPVLNPYQPPSG---YFMTAIPQTQNRPAYYP 422
Query: 452 QQQLVP----------GMRPNYFVPM---VQPGQQNQRPGGRR------SGTGPMQQ--- 489
Q+ P G RP+ F + ++P G R G G Q+
Sbjct: 423 ASQMAPLRPSPRWTSQGARPHPFQNLPGAIRPAASRPPFGSMRPMSSQLRGVGASQRIAN 482
Query: 490 -AQQPIPLMQP-----------RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
+ Q + L RM P+ Y+Y G P V P + P
Sbjct: 483 SSTQALGLPPGASAGAAGAPGVRMGPQ---YKYAAGVRNPQQHVNIQPQARVQQP----- 534
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
A Q AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D
Sbjct: 535 ------AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 588
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
+E+LH+LESPE+L++KV EA+ VL+ ++A
Sbjct: 589 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 622
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 296/642 (46%), Positives = 391/642 (60%), Gaps = 67/642 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIRDKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV ++ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK D K YV +AQKK ER+ ELK KFE+ K+ + G+NLYVKNLDDSI D++
Sbjct: 243 LNGKDMGDGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG+++ SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPPVAPG-------LGQQLFYGQGPPIIPPQ 446
QRKEER+A L MR G RM ++PP G Q F+ GP I P
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQLFPPNTAGGFFVPTMTPSQRFF--GPQITTPM 420
Query: 447 ---PGFGYQQQLVPGMRPNYFVPMVQ----------------------PGQQNQRPGGRR 481
P + QQ MRP V VQ P Q Q G R
Sbjct: 421 RSTPRWAQQQ-----MRPATAVQSVQAGAASAAGAAAVGGFQGAAGAVPTQFRQSGAGAR 475
Query: 482 SGTGPMQQAQQPIPLMQP---RMLPRG-RIYRYPPGCNIPDVPVAG--VPGG--MLPGPY 533
GT P Q M G R P++ +AG + GG Y
Sbjct: 476 -GTQPQVQGTHAAAAAAAAANNMRSSGARAITGQQSVAAPNMQIAGAQIAGGAQQRAASY 534
Query: 534 ----DIGGMPFRDAAFSQPM--------QTGALASALANASPEQQRTLLGENLYPLVDQL 581
++ P + +QP+ Q +AS LANA P++Q+ +LGE LYP+++++
Sbjct: 535 KYTSNMRNPPVQQMQQAQPLPSQLQGKNQEKLIASLLANAKPQEQKQILGERLYPMIERM 594
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
A K+TGMLLE++ +E+LH+LE EALKAKV EA+ VL+
Sbjct: 595 HATLAGKITGMLLEIENSELLHMLEDQEALKAKVEEAVAVLQ 636
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/635 (44%), Positives = 387/635 (60%), Gaps = 54/635 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK++F ++G S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 190 FTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + ++ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD + D++
Sbjct: 250 DMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 398 QRKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQ- 453
QRKEER+A L M+ R P+ P P F P + Q
Sbjct: 369 QRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQTQNRAAYYSANQL 428
Query: 454 -QLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP------LMQPRMLPRGR 506
QL P P + V+P PG R + P QA I PRM+ R
Sbjct: 429 AQLRPS--PRWTTQGVRPQHFQNMPGAMRP-SAPRPQALNAIRPTAAGNAQVPRMMASQR 485
Query: 507 I-------------------------YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFR 541
+ Y+Y G P +A P +P +
Sbjct: 486 MPAQTLGQRAAGASTTAAAPVRTMPQYKYAAGVRNPQQHMASQP-----------QVPMQ 534
Query: 542 DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+
Sbjct: 535 QPAVLVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQDVHPSLAGKITGMLLEIDNSEL 594
Query: 602 LHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPT 636
LH+LESPE+L++K+ EA+ VL+ ++A S T
Sbjct: 595 LHMLESPESLRSKMDEAVAVLQAHQAKEAAQKSTT 629
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 285/645 (44%), Positives = 385/645 (59%), Gaps = 76/645 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + E+ L+ +F ++G S VM D GKS+ FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMLE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPP-----IIPPQ------- 446
RKEER+A L M+ R P + P Y PP PQ
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINP-------YQPAPPSGYFMTAIPQAQNRGAY 422
Query: 447 -PGFGYQQQLVP-------GMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
P G QL P G+RP +F QN + R SG P
Sbjct: 423 YPAAGQMAQLRPSPRWPTQGVRPQHF--------QNMQSAMRSSGPRPQMFGSMRPSSQL 474
Query: 499 PRMLPRGRI--------------------------YRYPPGCNIPDVPVAGVPGGMLPGP 532
PRM R+ Y+Y G V P + P
Sbjct: 475 PRMTANQRVATQAMGPRTATTATSITANSVRGVSQYKYATGVRNTQQHVNAQPQVTVQQP 534
Query: 533 YDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGM 592
+ +P+ T LA+A + +Q+ +LGE L+PL+ + A K+TGM
Sbjct: 535 AVV-------VQGQEPLTTTMLAAAPLH----EQKQMLGERLFPLIQAMHLSLAGKITGM 583
Query: 593 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 637
LLE+D +E+LH+LESPE+L++KV EA+ VL+ ++A S T+
Sbjct: 584 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSVTN 628
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 318/727 (43%), Positives = 413/727 (56%), Gaps = 117/727 (16%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
AP A + S T+ NN Q S SLYVG+LD SV ++ LY+LF+ +GQV S+
Sbjct: 28 APEVTAVESSSPTSPNNNN-------QPHSASLYVGELDPSVTEAMLYELFSSIGQVASI 80
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN
Sbjct: 81 RVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGN 140
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +N
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 200
Query: 190 GMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLNDK+VFVG + K++R+S D K F N+Y+KN+ TE++ +KIF +FG ITS
Sbjct: 201 GMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITS 260
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ RD +GKS+ FGFVN+ + A +V+ ++ K+ ++ YVG+AQKK+ERE EL+ +
Sbjct: 261 ATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQ 320
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR----- 362
+E + E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD R
Sbjct: 321 YEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPD 380
Query: 363 ------------------------------------------------GSGFVAFSTAEE 374
G GFV FS+ +E
Sbjct: 381 SEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDE 440
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG----------PRMPMY 423
ASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R + P+ M
Sbjct: 441 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQ 500
Query: 424 PPVAPGLGQQLFY--GQ--GPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGG 479
P V G GQQ F GQ G P PQPG +PG RP + P PGQQ GG
Sbjct: 501 PAVFYGPGQQGFIPAGQRGGMPFA-PQPGM---VMGIPGGRPGQY-PGPFPGQQ----GG 551
Query: 480 RRSGTGPMQQAQ---QPIPL--MQ-PRMLPRGRIYRYPPG-----CNIPDVPVAGVPGGM 528
R G GP QQ Q IP+ MQ P +P G Y G V G+P G
Sbjct: 552 R--GMGPNQQMPPNFQGIPMGAMQGPGGIPNGMGYPQAMGQVQFGRGGGRGQVPGMPMGQ 609
Query: 529 -LPGP----------------YDIGGMPFRDAAFSQPMQTGAL-ASALANASPEQQRTLL 570
+ GP + AA + GAL A AL A+P QQ+ +L
Sbjct: 610 GMRGPGYQGRGGPQGGPRPQGGRGQNAAAQPAAGREEAPAGALTAQALNAAAPPQQKQML 669
Query: 571 GENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQA 630
GE LYP + + + A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V + +
Sbjct: 670 GEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKG 729
Query: 631 TGPSPTD 637
G +P D
Sbjct: 730 EGEAPAD 736
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 294/613 (47%), Positives = 384/613 (62%), Gaps = 43/613 (7%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 163
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 223
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN+++ + A ++
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLYVKNLDD D
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
LAQRK+ RR L+ SQ+ RM Y PG+ Q + GQ PP PG+G Q
Sbjct: 404 LAQRKDVRRQALE-SQIAQRAQQRM-QYGAGFPGM--QGYMGQPMYGYPPMPGYG---QP 456
Query: 456 VPGMRPNYFVPMVQPGQ-QN---QRPGGRRSGTGPMQQAQQPIP-----LMQPRMLPRGR 506
+PGM P M PG QN RP +G QP+P P +P
Sbjct: 457 MPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNG--------QPLPGGVPAYGMPPQVPYPG 508
Query: 507 IYRY---PPGCNIPDVPVA-----------GVPGGMLPGPYDIGG-MPFRDAAFSQPM-Q 550
Y P G IP P A G P G+ G GG MP R + P Q
Sbjct: 509 APGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQ 568
Query: 551 TGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
G L A +LA A+P +Q+ +LGE LYPL+ + + + A K+TGMLLEMD E+LHL+ES
Sbjct: 569 AGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQP 628
Query: 610 ALKAKVAEAMEVL 622
AL+ KV EA+ VL
Sbjct: 629 ALQEKVDEALRVL 641
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 290/623 (46%), Positives = 385/623 (61%), Gaps = 57/623 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL DTFS FGNILSCKVA
Sbjct: 63 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +I+K+NGMLLN K V+VG F+ ++ERE +K + F
Sbjct: 123 QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E +++ LK +F ++G ITS VM DG S+ FGFV F+DPD A R+
Sbjct: 183 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDD+I D++
Sbjct: 243 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 303 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 361
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQP---GFGYQQQ 454
QRKE+R+A L M+ RM + G F+ P +PP P G Q
Sbjct: 362 QRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPSGASGFF---VPSLPPAPRYYGPAQMTQ 418
Query: 455 LVPGMRPNYFVPMVQPGQQ------NQRPGGRRSGTGPMQQA------------QQPIPL 496
+ P P V+P Q N +P R + P Q QQ +
Sbjct: 419 IRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAA 478
Query: 497 MQPRMLP-------RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM 549
+ P R Y+Y P P P V I G
Sbjct: 479 AAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAV---------HIQG------------ 517
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
Q ++ LA A ++Q+ +LGE L+PL+ ++ D A K+TGMLLE+D +E+LH+LE E
Sbjct: 518 QEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAE 577
Query: 610 ALKAKVAEAMEVLR-NVAQQQAT 631
+LKAKV EA+ VL+ + A+QQAT
Sbjct: 578 SLKAKVDEAVAVLQAHQAKQQAT 600
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 21/190 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRAL 98
T++YV + +D L D+F + G++ S +V +D R G+G+V + A RA
Sbjct: 183 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR--GFGFVAFEDPDAAERAC 240
Query: 99 DELNFTPL-NGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
ELN L GKP+ R + + + N+++KNLD +ID+
Sbjct: 241 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 300
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
+ L F+ FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 301 ERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 359
Query: 202 PFLRKQERES 211
RK++R++
Sbjct: 360 LAQRKEDRKA 369
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V L RS G+G+V +++ EAT
Sbjct: 283 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEAT 340
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 341 KAVTEMNGRIVGTKPLYVALAQR 363
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 276/616 (44%), Positives = 384/616 (62%), Gaps = 41/616 (6%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVGDL VN++QLY+ FN G + S+RVCRD TRRSLGY YVN+ ++A RALD L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
NF P+NGKP RIM+S RDP++R+SG GNIFIKNL+K IDNKA++DTFS FGNILSCK+A
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIAL 140
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTAD-KTRFN 219
D G S+GY FV F+ +E+A AI+K+NGMLL+ K+VFVG F+ ++ER E + ++
Sbjct: 141 DENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYT 200
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKN + ++D+ + +F + G I S VMRD GKS+ FGFV+++ + A ++VE L
Sbjct: 201 NLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETL 260
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K+FD + YV +AQKK ER L+ ++EQ +E +F+G+NLYVKNLDD I D KL+
Sbjct: 261 NEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLR 320
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ F+ FGTITS KVM D GISRG GFV FS+ EEA+KA+TEMNG++++SKPLYVALAQR
Sbjct: 321 QEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQR 380
Query: 400 KEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQL----FYGQGPPI------------- 442
KE+R+A+L ++ R+P P PG+ Q +Y G
Sbjct: 381 KEDRKAQLAAQYVQRMSTLRIPQ--PGQPGVNQMFQQGGYYMPGMHQGQQQQQRFYATQQ 438
Query: 443 IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML 502
+P +P + QQ + + + + Q + G R +G P Q QQ + Q
Sbjct: 439 MPARPRWQNQQMMRNSGGGSSYGGIGGGSQMGRGRGMRFAGV-PRSQGQQNVNPSQRSAA 497
Query: 503 PRGRIY----RYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALAS 556
+ R+PP N+ ++P P + P +DA L +
Sbjct: 498 ANAALVSNQPRHPPYKHSNVRNIP----PQAPSQANHQTRAQPAQDA--------DNLTT 545
Query: 557 ALANASPEQQRTLLGENLYPLVDQL-EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
L+ QQ+ +LGE LYP V+ + + A K+TGMLLE++ EVLH+LES EAL +KV
Sbjct: 546 HLSQVDEPQQKQILGEKLYPRVEAICGSEKAGKITGMLLEIENAEVLHMLESKEALDSKV 605
Query: 616 AEAMEVLRNVAQQQAT 631
EA++VL ++ Q +
Sbjct: 606 QEAIDVLDKHSKTQES 621
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 102/191 (53%), Gaps = 23/191 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+LYV + ++D + DLF Q G++VS V RD S +S G+G+V+Y A +A++
Sbjct: 200 TNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSG-KSRGFGFVSYETHEAAQKAVE 258
Query: 100 ELNFTPLNGKPIRIMY-------SYRDPTIRKS------------GAGNIFIKNLDKSID 140
LN + +R MY S R +R+ N+++KNLD ID
Sbjct: 259 TLNEKEFD---LRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVID 315
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
+ L F+ FG I S KV +D G SRG+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 316 DAKLRQEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYV 375
Query: 201 GPFLRKQERES 211
RK++R++
Sbjct: 376 ALAQRKEDRKA 386
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
++F +LYV +LD ++D++L F G + S +V D S G+G+V +++ EA
Sbjct: 298 KRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSD-EKGISRGFGFVCFSSPEEA 356
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E+N + KP+ + + R
Sbjct: 357 TKAVTEMNGRIIISKPLYVALAQR 380
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 303/646 (46%), Positives = 407/646 (63%), Gaps = 51/646 (7%)
Query: 6 VQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ 65
+Q A A + SP ++ G + F + SLYVGD+ V ++ L+++FN +G
Sbjct: 47 LQNMANAATSPTNSPTAASVS-----GPVQPFQTASLYVGDIHPDVTEALLFEIFNAVGP 101
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
V S+RVCRD TRRSLGY YVN++ +A RALD +NFT + G P RIM+S RDP++RKS
Sbjct: 102 VASIRVCRDAVTRRSLGYAYVNFHNLVDAERALDTMNFTCIKGVPCRIMWSQRDPSLRKS 161
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G GNIF+KNLD SIDNKAL+DTFS FGNILSCKVA D GQS+GYG+V ++ E+A AI
Sbjct: 162 GVGNIFVKNLDPSIDNKALYDTFSLFGNILSCKVANDPTGQSKGYGYVHYETAEAATEAI 221
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+K+NGML+ +VFVG F ++QER D T N YVKNL T+ DL++ F FG +
Sbjct: 222 NKINGMLIAGTEVFVGHFQKRQERPDIEDWT---NCYVKNLPTQWTDADLRREFEPFGQV 278
Query: 246 TSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEALNGKKFD-----DKEWYVGKAQKKYE 299
S VM+D + + + FGFVN++D D A +VE L+GK F D E YVGKAQK+ E
Sbjct: 279 NSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRTE 338
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
RE EL+ KF+Q E +K++G+NLYVKNLDD + D++L+E F+ +GTITS +VMRD G
Sbjct: 339 RERELRQKFDQLKLERINKYQGVNLYVKNLDDLLQDEELREAFTNYGTITSARVMRDSTG 398
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPR 419
SRG GFV FST EEA+ A+ EMNGK++ KP+YVA AQRKE RRA+L+ + G
Sbjct: 399 NSRGFGFVCFSTPEEAATAVAEMNGKLITGKPVYVAFAQRKEVRRAQLEAQHAQRATGVL 458
Query: 420 ----MPMYPPVAPGLGQQLFYGQGPPIIPPQ--PGFGYQQQLVP-GMRPNYFVPMVQPGQ 472
MPM P P G +FY Q P +P Q + Y QQ++P G+ P VP G+
Sbjct: 459 VNRGMPMGQP--PMYGAPMFYAQ-PNQMPMQGRQAYMYPQQMLPRGVHPR--VPFGFGGR 513
Query: 473 QNQRP---GGRRSGTG-PMQQAQQ-------PIPLMQPRMLPRGRIYRYPPGC-NIPDVP 520
P G +G G PMQQ +Q P P P +P R ++Y G N P
Sbjct: 514 MPGAPGPAGFSMAGYGMPMQQQRQPRRGRQVPGPAGAPNGMPNRRNFKYTTGARNHPSRE 573
Query: 521 VAG--VPGGMLP--GPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
G + GG++P +GG P + ++ALA ASPE Q+ ++GE LYP
Sbjct: 574 GLGNNMSGGVMPQGSSTPMGGAPALEP---------LTSAALAAASPEAQKNMIGERLYP 624
Query: 577 LVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
L+ + +++ A K+TGMLLEMD +E+LHLLESP+AL +K+ EA++VL
Sbjct: 625 LIHRQQNELAGKITGMLLEMDNSELLHLLESPDALDSKIQEAIQVL 670
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 293/613 (47%), Positives = 384/613 (62%), Gaps = 43/613 (7%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 46 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 105
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 106 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 165
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 166 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 225
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN+++ + A ++
Sbjct: 226 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAKQA 285
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLY+KNLDD D
Sbjct: 286 VDELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDD 345
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 346 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 405
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
LAQRK+ RR L+ SQ+ RM Y PG+ Q + GQ PP PG+G Q
Sbjct: 406 LAQRKDVRRQALE-SQIAQRAQQRM-QYGAGFPGM--QGYMGQPMYGYPPMPGYG---QP 458
Query: 456 VPGMRPNYFVPMVQPGQ-QN---QRPGGRRSGTGPMQQAQQPIP-----LMQPRMLPRGR 506
+PGM P M PG QN RP +G QP+P P +P
Sbjct: 459 MPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNG--------QPLPGGVPAYGMPPQVPYPG 510
Query: 507 IYRY---PPGCNIPDVPVA-----------GVPGGMLPGPYDIGG-MPFRDAAFSQPM-Q 550
Y P G IP P A G P G+ G GG MP R + P Q
Sbjct: 511 APGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQ 570
Query: 551 TGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
G L A +LA A+P +Q+ +LGE LYPL+ + + + A K+TGMLLEMD E+LHL+ES
Sbjct: 571 AGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQP 630
Query: 610 ALKAKVAEAMEVL 622
AL+ KV EA+ VL
Sbjct: 631 ALQEKVDEALRVL 643
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 290/633 (45%), Positives = 384/633 (60%), Gaps = 75/633 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG----NIFIKNLDKSIDNKALHDTFSTFGNILS 156
LNF + G+P+RIM+S RDP++RKSG G NIFIKNLDKSIDNKAL+DTFS FGNILS
Sbjct: 72 LNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 131
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 132 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 190
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 191 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 250
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I
Sbjct: 251 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 310
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 311 DERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 369
Query: 395 ALAQRKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP 425
ALAQRKEER+A L M+ PP G R YPP
Sbjct: 370 ALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPP 429
Query: 426 ------------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQP 470
A G F I P P+P F MRP + VP V
Sbjct: 430 SQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMS 482
Query: 471 GQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLP 530
Q+ + G P A P + R +P+ Y+Y G P + P +
Sbjct: 483 TQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQ 537
Query: 531 GPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVT 590
P A Q AS LA+A P++Q+ +LGE L+PL+ + A K+T
Sbjct: 538 QP-----------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKIT 586
Query: 591 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
GMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 619
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 290/637 (45%), Positives = 384/637 (60%), Gaps = 63/637 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N+S L+D F+ G V+S+RVCRD+ +RRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ D G+NLYVKNLDDSI D++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDSAFGVNLYVKNLDDSIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L + FS +GTITS KVM D G S+G GFV F +A EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LCKEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQ 453
QRKEER+A L MR G RM ++PP A G G P +PP F +
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQIFPPNAAG-------GFFVPTMPPNQRF-FGP 414
Query: 454 QLVPGMR--PNYFVPM-----VQ---------------------PGQQNQRPGGRRSGTG 485
Q+ MR P + P+ VQ P Q G R G
Sbjct: 415 QMTTPMRNTPRWATPVRPAATVQSVQAGAAAAAAGGFQGAAGAVPTQFRSAAAGARGGQS 474
Query: 486 PMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPG-----------PYD 534
Q + R R G P + G + G +
Sbjct: 475 QQVQGTHAAAAAAANNM-RNTGARAITGQQTVAAPNMQIAGAQIAGGAQQRASNYKYTSN 533
Query: 535 IGGMPFRDAAFSQPM-------QTGALASAL-ANASPEQQRTLLGENLYPLVDQLEHDNA 586
+ P + +QPM + L ++L ANA P++Q+ +LGE LYP+++++ A
Sbjct: 534 MRNPPVQQMPQAQPMPPQLQGKNSEKLIASLLANAKPQEQKQILGERLYPMIERMHPSLA 593
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+
Sbjct: 594 GKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 630
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 290/647 (44%), Positives = 387/647 (59%), Gaps = 50/647 (7%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
AP + SP ++ A GG G SLYVG+LD SV ++ L+++FN +G V S+
Sbjct: 17 APPSNVGAISPPSSTQAGPGGTG-------ASLYVGELDPSVTEAMLFEIFNIIGPVASI 69
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD TRRSLGY YVNY A + RAL+ LN++ + G+P RIM+S RDP +RK+G GN
Sbjct: 70 RVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSAIKGRPCRIMWSQRDPALRKTGQGN 129
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLD+SIDNKALHDTF+ FG ILSCKV D G+SRG+ FV + E+A +AI ++
Sbjct: 130 IFIKNLDESIDNKALHDTFAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVD 189
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GM+LNDK+VFVG + K+ER+S A++ R F NV+VKN+ + TE + + + +FG S
Sbjct: 190 GMMLNDKKVFVGHHIGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVS 249
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
A+ D +GKSK FGFVN+ + A ++V+ LN K+ + ++ + G+AQK+ ER+ EL+
Sbjct: 250 IALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDTELRKT 309
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
E+ +E K G+NLYVKNLDD DD+L+ F FGTITSCKVM+D G+SR GFV
Sbjct: 310 IEEKRQEFDAKSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFV 369
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVA 427
+S+ EEA+KA++EMNGKM+ SKPLYVALAQR+E RR L+ SQ+ R+P P
Sbjct: 370 CYSSPEEATKAVSEMNGKMIGSKPLYVALAQRREARRQALE-SQIAQRTNQRVPYAPGGM 428
Query: 428 P-GLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGP 486
P G Q YG PP PG+G + Y M+Q QRP R P
Sbjct: 429 PQGYMNQPMYG-----YPPMPGYGQPGMMPMRPMMGYNPQMMQ-----QRP---RYPPAP 475
Query: 487 MQQ------------AQQPIPLMQPRMLPR----GRIYRYPPGCNIPDVPVAGVPGGMLP 530
M Q Q +P P P G I PP + P + GG P
Sbjct: 476 MNQPGMGMPPMPYGMPPQQMPYAIPPNYPVRPGPGGISARPP-TSAPAPAQGRINGGPSP 534
Query: 531 GPYDIG-------GMPFRDAAFS--QPMQTGALASALANASPEQQRTLLGENLYPLVDQL 581
Y G MP + QP Q A ALA A +Q+ +LGE LYPL+
Sbjct: 535 VGYSSGLPGSMPRQMPMARPGYDQVQPQQNKLSAQALARAPLAEQKQMLGEALYPLIGAT 594
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
+ + A K+TGMLLEMD +E+LHL+ESP AL KV EA++VL ++
Sbjct: 595 QPELAGKITGMLLEMDNSELLHLIESPPALLEKVDEALKVLEEWGKE 641
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 293/613 (47%), Positives = 383/613 (62%), Gaps = 43/613 (7%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 46 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 105
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 106 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 165
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 166 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 225
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN++ + A ++
Sbjct: 226 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKA 285
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLY+KNLDD D
Sbjct: 286 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDD 345
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 346 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 405
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
LAQRK+ RR L+ SQ+ RM Y PG+ Q + GQ PP PG+G Q
Sbjct: 406 LAQRKDVRRQALE-SQIAQRAQQRM-QYGTGFPGM--QGYMGQPMYGYPPMPGYG---QP 458
Query: 456 VPGMRPNYFVPMVQPGQ-QN---QRPGGRRSGTGPMQQAQQPIP-----LMQPRMLPRGR 506
+PGM P M PG QN RP +G QP+P P +P
Sbjct: 459 MPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNG--------QPLPGGVPAYGMPPQVPYPG 510
Query: 507 IYRY---PPGCNIPDVPVA-----------GVPGGMLPGPYDIGG-MPFRDAAFSQPM-Q 550
Y P G IP P A G P G+ G GG MP R + P Q
Sbjct: 511 APGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSMPRGGQMPARPHEQAAPAPQ 570
Query: 551 TGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
G L A +LA A+P +Q+ +LGE LYPL+ + + + A K+TGMLLEMD E+LHL+ES
Sbjct: 571 AGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQP 630
Query: 610 ALKAKVAEAMEVL 622
AL+ KV EA+ VL
Sbjct: 631 ALQEKVDEALRVL 643
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/607 (46%), Positives = 383/607 (63%), Gaps = 43/607 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A++AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG++ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR GP + + P V Q +YG GPP I
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVPQPPAQAPYYGSGPP-IQ 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP---RM 501
P P + Q RP+ +V+P ++RP + G +Q +P + P R+
Sbjct: 429 PAPRWTAQPP-----RPS-CASVVRPAAMSRRP---LTPVGSSRQVSTHVPHLVPHTQRV 479
Query: 502 LPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGM---PFRDAAFSQPMQTGALAS 556
G P GC+ P P +L Y ++ A P Q AS
Sbjct: 480 ANIGTQTTGPSMTGCSTPSRP-------LLTHTYSTPAHRTDRVQEPAVHVPGQEPLTAS 532
Query: 557 ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 616
LA A +Q+ ++GE L+PLV + A K+TGMLLE+D +E+L +LESPE+L AKV
Sbjct: 533 MLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPESLNAKVE 592
Query: 617 EAMEVLR 623
EA+ VL+
Sbjct: 593 EALAVLQ 599
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 117/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ +L DLF+Q G+++SV+V RD S S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSG-HSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVVNMNGREVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 291/623 (46%), Positives = 392/623 (62%), Gaps = 54/623 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN++ +A RALD
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ LK++F ++G S VM D+ GKS+ FGFV+F+ +DA ++VE
Sbjct: 191 TNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + K +VG+AQKK ER+ ELK KFE +E +++G+NLY+KNLDD+I D+KL
Sbjct: 251 INGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPG 458
RKEER+A L M+ G M PP A I QP GY VP
Sbjct: 370 RKEERKAHLTNQYMQRIAG--MRAMPPNA-------------IINQFQPTSGYFMPAVPQ 414
Query: 459 M--RPNYFVPMVQPGQQNQRPGGR---RSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPP- 512
R Y+ P Q Q RP R + G G P L QP PRG + P
Sbjct: 415 AQNRTTYYAPN-QLAQ--MRPNPRWQQQGGRGQGGFQGMPSSLRQPG--PRGNMRHMSPS 469
Query: 513 ---------GCNIPDVPVAGVPGGMLPGPYDIG-GMPFRDAAFSQPM------------- 549
G ++ P GVPG PY + + QP+
Sbjct: 470 GGSQGPRASGQSMAPRPSMGVPGPRTMSPYKYATSVRNPNPQVVQPIALQQAQPAVHIQG 529
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LES E
Sbjct: 530 QEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHE 589
Query: 610 ALKAKVAEAMEVLR-NVAQQQAT 631
+L++KV EA+ VL+ + A++ AT
Sbjct: 590 SLQSKVEEAVAVLQAHQAKKDAT 612
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + + D QL ++F + G+ +SV+V D S+ +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTD-SSGKSRGFGFVSFEKHED 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N T LNGK + R + I + N++IKNLD
Sbjct: 244 ANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 363 LYVALAQRKEER-----KAHLTNQYMQRIA 387
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 285/609 (46%), Positives = 379/609 (62%), Gaps = 45/609 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ER E A F
Sbjct: 132 CDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G+S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y +AQK+ ER+ ELK KFEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP---RM 501
QP + Q RP+ MV+P + P S ++QA +P P R+
Sbjct: 429 TQPAPRWTSQ---PPRPS-CASMVRPPVMPRCPPAHISS---VRQASTQVPRTVPHTQRV 481
Query: 502 LPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPF-----RDAAFSQPMQTGAL 554
G P GC P P+ PY ++ A P
Sbjct: 482 ANIGTQTTGPSGVGCCTPGRPLL---------PYKCSSAAHSTDQVQEPAVHIPGHEPLT 532
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK
Sbjct: 533 ASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAK 592
Query: 615 VAEAMEVLR 623
+ EA+ VL+
Sbjct: 593 IDEAVAVLQ 601
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 31/218 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L V++ L DLF+Q G+++SV+V RD ++ RS +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-NSGRSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y+ R D R G N+++K
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID+ L FS +G I S KV T+ S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDDKLRKEFSPYGVITSAKVMTEG-SHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 294/639 (46%), Positives = 391/639 (61%), Gaps = 62/639 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN++ +A RALD
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ LK+IF ++G S VM D GKS+ FGFV+++ +DA ++VE
Sbjct: 191 TNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 251 MNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPR-MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
RKEER+A L M+ G R MP A + Q QP GY VP
Sbjct: 370 RKEERKAHLTNQYMQRIAGMRAMP-----ANAIINQF-----------QPTSGYFMPAVP 413
Query: 458 GM--RPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQ---PIPLMQPRMLPRGRIYRYPP 512
R Y+ P Q Q RP R G Q P L QP PR + P
Sbjct: 414 QAQNRTTYYAPN-QLAQ--MRPNPRWQQQGGRSQGGFQAMPSSLRQPG--PRANLRHMSP 468
Query: 513 GCNI-------------PDVPVAGVPGGMLPGPYDIG------------GMPFRDAAFSQ 547
+ P V V+G P M P Y G + A
Sbjct: 469 SSSTQGPRAGGQSMGPRPSVGVSG-PRAMPPYKYATGVRNPNPQVVQPIALQQTQPAVHV 527
Query: 548 PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLES 607
Q AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LES
Sbjct: 528 QGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLES 587
Query: 608 PEALKAKVAEAMEVL-----RNVAQQQATGPSPTDRVAS 641
E+L++KV EA+ VL + A Q+ G +PT A+
Sbjct: 588 HESLRSKVEEAVAVLQAHQAKKDATQKVGGMAPTAAAAT 626
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 348 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRI 386
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 288/645 (44%), Positives = 395/645 (61%), Gaps = 79/645 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPALR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAAPRA 520
Query: 540 ---FRDAA-------FSQPMQT----------GALASALANASP-EQQRTLLGENLYPLV 578
++ A+ QP+Q L +++ A+P ++Q+ +LGE L+PL+
Sbjct: 521 VAPYKYASSIRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLI 580
Query: 579 DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 625
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 287/645 (44%), Positives = 394/645 (61%), Gaps = 79/645 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR------ 463
Query: 505 GRIYRYPPGCNIPDVPVAGVPG------GMLPGPYDIGGMP------------------- 539
+ P G PD G G+ GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGGVPTAVQNLAPRAAVAAAAPRA 520
Query: 540 -----FRDAAFS-----QPMQT----------GALASALANASP-EQQRTLLGENLYPLV 578
+ + S QP+Q L +++ A+P ++Q+ +LGE L+PL+
Sbjct: 521 VAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLI 580
Query: 579 DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 625
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 289/650 (44%), Positives = 390/650 (60%), Gaps = 82/650 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVG+LD +V ++ LY++F+ +G V S+RVCRD TRRSLGY YVNY A +A RAL
Sbjct: 56 NTSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERAL 115
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + K RIM+S RDP++RK+G GNIFIKNLD++IDNKALHDTF+ FG+ILSCK
Sbjct: 116 EQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCK 175
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
VA DS G S+GYGFV + ESA++AI +NGM LNDK VFVG + ++ER++ D+ R
Sbjct: 176 VAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRA 235
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KNL T ++L ++F ++G +TS AV D GK + FGFVN+++ + A+++V
Sbjct: 236 HFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAV 295
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EAL+ K + YV +AQK+ ER+ EL+ EQ ET K++G+NLY+KNLDD D+
Sbjct: 296 EALHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDE 355
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FGTITSCKVM+D G+SRG GFV FS +EA+KA+ EMNGKM+ SKPLYV+L
Sbjct: 356 KLQAEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSL 415
Query: 397 AQRKEERRARL-----QFSQMRPP--VGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF 449
AQRK+ R+ +L Q +QMR +P P AP Q++YG PP G
Sbjct: 416 AQRKDVRKQQLEAQMSQRAQMRSQQIAAAGIPGAPYGAP--PNQMYYGGAAAYPPPGRGM 473
Query: 450 GYQQQLVP-GM--RPNY-----FVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM 501
Y +P GM RP Y PM PG + +P Q P P
Sbjct: 474 AYPPNGMPAGMPPRPRYAPPGQMPPMGMPGAPHYQP----------PQGYPGYPAGDPAF 523
Query: 502 LPRGRIYRYPPGCNIPDVPVAG-VPGGM-------------------------------L 529
G + YP G P P G P G +
Sbjct: 524 --PGADHAYPAG--DPGYPAGGPAPAGSMRGMPGPPGGPAPAGFRGPGGPNGPPIGRNGM 579
Query: 530 PGPYDIGGMP--FRDAAFSQPM---------------QTGALASALANASPEQQRTLLGE 572
P + G P RD A+ QP QTG +ALA ASP +Q+ +LGE
Sbjct: 580 PPAGGMRGAPPQSRDPAYHQPSTLSGRATSHRAPEAPQTGLSPAALAKASPAEQKQMLGE 639
Query: 573 NLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
LYP + + + + A K+TGM+LE+D E+LHLLE+ AL AKV+EA++VL
Sbjct: 640 ALYPQIAEKQPEKAGKITGMILEIDNAELLHLLENTTALDAKVSEAVQVL 689
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 289/629 (45%), Positives = 382/629 (60%), Gaps = 74/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 247
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 248 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 307
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 308 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 366
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 367 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 426
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 427 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 479
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 480 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 532
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 533 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLL 583
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 584 EIDNSELLHMLESPESLRSKVDEAVAVLQ 612
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 288/646 (44%), Positives = 393/646 (60%), Gaps = 80/646 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAATAAPR 520
Query: 540 ------FRDAAFS-----QPMQT----------GALASALANASP-EQQRTLLGENLYPL 577
+ + S QP+Q L +++ A+P ++Q+ +LGE L+PL
Sbjct: 521 AVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPL 580
Query: 578 VDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 IQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 626
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/389 (62%), Positives = 305/389 (78%), Gaps = 6/389 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVGDL+ S ++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVN++ A +A RA+
Sbjct: 42 NTSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAI 101
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D LNF +NGKPIRI+YS RDPTIRKSG GNIFIKNLDK ID AL DTF+ FGNI+S K
Sbjct: 102 DVLNFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFGNIVSAK 161
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VATD G S+GYGF+QFD E +AK AI+K+NGM LNDK V+VGPF R+ ER +T +T+F
Sbjct: 162 VATDGQGNSKGYGFIQFDTEAAAKEAIEKVNGMELNDKVVYVGPFQRRAERGTT--ETKF 219
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNV+VKNL + T+++L+K+F FG +TS + +D DGKSK FGFV ++ P+DA+++VE
Sbjct: 220 NNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEE 279
Query: 279 LNGKK-FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+GK +DK+W V +AQKK ERE ELK KFE +E +K G NLY+KNL+D D+
Sbjct: 280 LDGKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEDGADDET 339
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ELF EFGTITSC+VMRD +G+SRGS FVAFS+ EEA++A+TE+NGKMV +KPLYVALA
Sbjct: 340 LRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALA 399
Query: 398 QRKEERRARL--QFSQMR-PPVGPRMPMY 423
QRKE+RR RL QF+Q P G PMY
Sbjct: 400 QRKEDRRMRLQAQFAQRSMGPGGVMAPMY 428
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 289/629 (45%), Positives = 382/629 (60%), Gaps = 74/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 247
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 248 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 307
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 308 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 366
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 367 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 426
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 427 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 479
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 480 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 532
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 533 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 583
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 584 EIDNSELLHMLESPESLRSKVDEAVAVLQ 612
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 289/629 (45%), Positives = 382/629 (60%), Gaps = 74/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 247
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 248 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 307
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 308 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 366
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 367 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQVA 426
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 427 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 479
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 480 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 532
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 533 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 583
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 584 EIDNSELLHMLESPESLRSKVDEAVAVLQ 612
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 285/620 (45%), Positives = 385/620 (62%), Gaps = 44/620 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++FG++G S VM D GKSK FGFV+F+ ++
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEE 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGG-----YFMPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGG--------RRSGTGPMQQAQQPIPL 496
+P + Y + MRPN QQ RP G R+SG P + P
Sbjct: 418 SRPTY-YAPNQMTQMRPN------PRWQQGGRPQGFQGMPNAMRQSGPRPALRHLSPANA 470
Query: 497 MQPRMLPRG--RIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA- 553
R LP R+ N+ P P PY QP+Q
Sbjct: 471 PASRGLPAAAQRVGVGTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPGVQPLQAPQP 530
Query: 554 ----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLH 603
AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH
Sbjct: 531 AVLVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLH 590
Query: 604 LLESPEALKAKVAEAMEVLR 623
+LESPE+L++KV EA+ VL+
Sbjct: 591 MLESPESLRSKVEEAVAVLQ 610
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 284/629 (45%), Positives = 384/629 (61%), Gaps = 73/629 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN + ++ LK++F ++G S VM D GKSK FGFV+F+ +DA ++VE
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVE 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY+KNLDD+I D+K
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALA
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 398 QRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
QRKEER+A L M+ G R + + P A G ++ P +P +
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGG-----YFMPAVPQAQSRPTY- 422
Query: 451 YQQQLVPGMRPNYFVPMVQPG--------------QQNQRPGGRR---SGTGPMQQAQQP 493
Y + MRPN P Q G Q RP R +GT P A +
Sbjct: 423 YAPNQMAQMRPN---PRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGTAP---ASRG 476
Query: 494 IPLMQPRM-------------------LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+P+ R+ Y+Y P PV + P +
Sbjct: 477 LPVSAQRVGVTTAGQSLAPRPPVAAPAPRAVPPYKYASSVRSPHPPVQPLQAPQ-PAVHV 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
G P AS LA A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 QGQEPL-------------TASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLL 582
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 583 EIDNSELLHMLESPESLRSKVEEAVAVLQ 611
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF++ G+ +SV+V D T +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHED 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N +NGK + R + I + N++IKNLD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 363 LYVALAQRKEER-----KAHLTNQYMQRIA 387
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 293/637 (45%), Positives = 384/637 (60%), Gaps = 50/637 (7%)
Query: 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
N G G+ + SLYVGDLD V +S L++ F Q G V+S+RVCRD+ +RRSLGY YVN
Sbjct: 2 NSGGGN---YTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVN 58
Query: 88 YNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
++ +A RALD +NF PL +P+RIM+S RDP++RKSG GN+FIKNL K IDNKA+ DT
Sbjct: 59 FHQPGDAERALDTMNFEPLKNRPMRIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDT 118
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FGNILSC+VATD G SRGYGFV F+ EE+A AI+K+NGMLLN+K+VFVG F+ +
Sbjct: 119 FSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPRS 178
Query: 208 ERES-TADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
ERE DK R F NVYVKN E + LK++F +G ITS VM D GKS+ FGFV+
Sbjct: 179 ERERMMGDKARLFTNVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVS 238
Query: 266 FDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
F++PD+A ++V+ LN K+ + K+ YVG+AQKK ER +LK KFEQ E +++G+NL
Sbjct: 239 FENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNL 298
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMN 383
YVKNLDD I D++L+ F+ +GTITS KVM D G S+G GFV FS+ EEA+KA+TEMN
Sbjct: 299 YVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMN 358
Query: 384 GKMVVSKPLYVALAQRKEERRARL------QFSQMRPPVGPRMPMYPP------VAPGLG 431
G+++V KPLYVALAQRKE+RRA L +F+ +R P G +MP V +
Sbjct: 359 GRIIVQKPLYVALAQRKEDRRAHLSSQFVQRFTGVRVPFG-QMPFNHSTPTSFIVPASMH 417
Query: 432 QQLFYGQGPPI--IPPQPGFGYQQQLVPG------------MRPNYFVPMVQPGQQNQRP 477
+ F+ G + PQ G QQ V G F +P Q Q
Sbjct: 418 PRAFFASGNVANNVRPQRWAGGQQIRVSGQYAMAGGAPMATAAAANFQRAPRPTMQGQNA 477
Query: 478 GGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVP--------VAGVPGGML 529
G + M + +PI G R G P V
Sbjct: 478 GVAAARNATM-SSTRPITSTIHGAAGSGTQSRNRVGVAPQQAPNSRPTFKFTNSVRNAQP 536
Query: 530 PGPYDIGGMPFRDAAFSQ---PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
P M +A Q P+ T LA A P Q+ +LGE L+PL+ + D A
Sbjct: 537 STPAGAAPMNASNAVLVQGQEPLTTQMLAEAC----PRDQKQMLGERLFPLIYAMHADLA 592
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
K+TGMLLE+D +E+LH+LE E+L+AKV EA+ VL+
Sbjct: 593 GKITGMLLEIDNSELLHMLEHSESLRAKVEEAVAVLQ 629
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 280/603 (46%), Positives = 382/603 (63%), Gaps = 43/603 (7%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LFN +G V S+RVCRD TRRSLGY YVN++ + +A
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LDELN+T + G+P RIM+S RDP++RK G GN+FIKNLD +IDNKALHDTFS FG ILSC
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D LG ++GYGFV FD+ ESA +AI+ +NGMLLNDK+V+VG + ++ER+S + K
Sbjct: 198 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALK 257
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KNL TE + +FG+FG ITS ++++D + K + FGFVN+ + + A ++
Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 317
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K++ K+ YVG+AQKK+ERE EL+ ++EQ E +K++G+NL++KNL D + D
Sbjct: 318 VDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++LK FS FGTITS K+M D G S+G GFV ++T EEA+KA+TEMN +M+ KPLYVA
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPM-------YPPVAPGLGQQLFYGQGPPIIPPQPG 448
LAQRKE RR++L+ +Q++ R+ P V G L YG G IP
Sbjct: 438 LAQRKEVRRSQLE-AQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVN 496
Query: 449 FGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM-QPRMLPRGRI 507
G +VPG N +PM PG Q P G + P A+ P+P +P M+P
Sbjct: 497 -GRGMPMVPGH--NGPMPMY-PGMPTQFPAGGPAPGYPGMNARGPVPAQGRPMMMPG--- 549
Query: 508 YRYPPGCNIPDVPVAG-VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQ 566
VP AG +P + GMP R F+ A+ LA E +
Sbjct: 550 ----------SVPSAGPAEAEAVPA---VPGMPER---FT--------AADLAAVPEESR 585
Query: 567 RTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 626
+ +LGE LYP V E + K+TGMLLEM +E+L LLE AL +V EA+ VL+
Sbjct: 586 KQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVLQEFV 645
Query: 627 QQQ 629
Q+
Sbjct: 646 DQE 648
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 286/626 (45%), Positives = 385/626 (61%), Gaps = 55/626 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGAITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
LYVALAQRKEER+A L M+ G R +P A + Q G +P P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRIAGMRALP-----ANTIINQFQPAAGGYFMPAVP--- 414
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRY 510
Q Q RP Y+ P Q Q R G Q Q +P + PR +
Sbjct: 415 -QAQ----SRPTYYA----PNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHL 465
Query: 511 PPGCNIP---DVPVAGVPGGMLPGPYDIGGM--------------PFRDAAFS-----QP 548
P + P +P A G+ ++G + + S QP
Sbjct: 466 APAGSAPASRGLPAAAQRVGVGTAAQNLGPRPPVAAPAPRAVPPYKYASSVRSPHPAVQP 525
Query: 549 MQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
+Q AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D
Sbjct: 526 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 585
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 586 NSELLHMLESPESLRSKVEEAVAVLQ 611
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 283/609 (46%), Positives = 378/609 (62%), Gaps = 45/609 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP---RM 501
QP + Q RP+ + P + ++QA +P M P R+
Sbjct: 429 TQPAPRWTSQ---PPRPS----CASMVRPPVMPRRPPAHISSVRQASTQVPRMVPHTQRV 481
Query: 502 LPRGRIYRYP--PGCNIPDVPVAGVPGGMLPGPYDIGGMP-----FRDAAFSQPMQTGAL 554
G P GC P P+ PY ++ A P Q
Sbjct: 482 ANIGTQTTGPGGVGCCTPGRPLL---------PYKCSSAAHSTYRIQEPAVHVPGQEPLT 532
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK
Sbjct: 533 ASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAK 592
Query: 615 VAEAMEVLR 623
+ EA+ VL+
Sbjct: 593 IDEAVAVLQ 601
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 283/609 (46%), Positives = 378/609 (62%), Gaps = 45/609 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP---RM 501
QP + Q RP+ + P + ++QA +P P R+
Sbjct: 429 TQPAPRWTSQ---PPRPS----CASVVRPPVVPRRPPAHISSVRQASTQVPHTVPHTQRV 481
Query: 502 LPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPF-----RDAAFSQPMQTGAL 554
G P GC P P+ PY ++ A P Q
Sbjct: 482 ANIGTQTTGPSGVGCCTPGRPLL---------PYKCSSAAHSTYRVQEPAVHIPGQEPLT 532
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK
Sbjct: 533 ASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAK 592
Query: 615 VAEAMEVLR 623
+ EA+ VL+
Sbjct: 593 IDEAVAVLQ 601
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 283/609 (46%), Positives = 378/609 (62%), Gaps = 45/609 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP---RM 501
QP + Q RP+ + P + ++QA +P M P R+
Sbjct: 429 TQPAPRWTSQ---PPRPS----CASMVRPPVMPRRPPAHISSVRQASTQVPRMVPHTQRV 481
Query: 502 LPRGRIYRYP--PGCNIPDVPVAGVPGGMLPGPYDIGGMPF-----RDAAFSQPMQTGAL 554
G P GC P P+ PY ++ A P Q
Sbjct: 482 ANIGTQTTGPGGVGCCTPGRPLL---------PYKCSSAAHNTYRVQEPAVHIPGQEPLT 532
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK
Sbjct: 533 ASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAK 592
Query: 615 VAEAMEVLR 623
+ EA+ VL+
Sbjct: 593 IDEAVAVLQ 601
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/631 (43%), Positives = 394/631 (62%), Gaps = 42/631 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FG+ILSCKV
Sbjct: 72 MNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
TD G ++GYGFV F+ +E+A AI+K+NGMLLN K+V+VG F+ ++ER + + +F
Sbjct: 132 TDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLMQMGDHQKQF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV++KNL+E + L + G++G I S +M D D KSK FGF++F+D + A V+
Sbjct: 192 TNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFD-DSKSKGFGFISFEDHEAANDFVKT 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + + Y G+AQKK ER ELK +FE +E + +++G+NLY+KNLDD I D++L
Sbjct: 251 INGSEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGVNLYIKNLDDEIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM D S+G GFV FS+ EEA+KA+TEMNG+++V+KPLYVALAQ
Sbjct: 311 RKEFSRYGTITSAKVMSDDKANSKGFGFVCFSSPEEATKAVTEMNGRILVAKPLYVALAQ 370
Query: 399 RKEERRARL--QFSQMRPP---VG------PRMPMYPPVAPGL-----GQQLFYGQGPPI 442
RK+ERRA+L Q+ Q P VG P P+YP +A Q+ + G
Sbjct: 371 RKDERRAQLASQYMQRVAPQVRVGQQASQQPVNPVYPTMAYHYAAMPQAQRNIFPAGQLA 430
Query: 443 IPPQPGFGYQ-QQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM 501
P + Q QQ +PN+ PG ++ G R+GT Q +QP+P + +
Sbjct: 431 QVRHPRWSQQPQQARTAAQPNF---QTIPGAAGRQFGAPRAGTA-TGQVRQPMPATRVPV 486
Query: 502 -------------LPRGRIYRYPPGCNIP---DVPVAGVPGGMLPGPYDIGGMPFRDAAF 545
P + R G + P VP +PG +P + A
Sbjct: 487 QAAPAGQRVGGMGAPTQQQMRLGAGAQLSAAKQYPKFAVPRQGMPGQMPAENVPVQ--AL 544
Query: 546 SQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
P Q ++ LA+A P++Q+ +LGE L+ ++ + D A K+TGMLLE+D +E+LH+L
Sbjct: 545 HVPGQEPLTSAMLASALPQEQKQMLGERLFSIISETHKDLAGKITGMLLEIDNSELLHML 604
Query: 606 ESPEALKAKVAEAMEVLRNVAQQQATGPSPT 636
E EAL+ KV EA++VL N ++ P P
Sbjct: 605 EVQEALEKKVEEAVQVLMNHQKEGTKPPGPA 635
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 283/609 (46%), Positives = 378/609 (62%), Gaps = 45/609 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP---RM 501
QP + Q RP+ + P + ++QA +P M P R+
Sbjct: 429 TQPAPRWTSQ---PPRPS----CASMVRPPVMPRRPPAHISSVRQASTQVPRMVPHTQRV 481
Query: 502 LPRGRIYRYP--PGCNIPDVPVAGVPGGMLPGPYDIGGMPF-----RDAAFSQPMQTGAL 554
G P GC P P+ PY ++ A P Q
Sbjct: 482 ANIGTQTTGPGGVGCCTPGRPLL---------PYKCSSAAHSTYRVQEPAVHIPGQEPLT 532
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK
Sbjct: 533 ASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAK 592
Query: 615 VAEAMEVLR 623
+ EA+ VL+
Sbjct: 593 IDEAVAVLQ 601
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 278/615 (45%), Positives = 378/615 (61%), Gaps = 46/615 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRM-------PMYPPVAPGLGQQLFYGQGPPIIPP 445
RKEER+A L + + MR GP + + P P + FY P+ P
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPN-PVAPV 428
Query: 446 Q--PGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
+ P + Q P +P + P P S M+QA +P + P
Sbjct: 429 RQAPQWTSHQSRPPQYQPPAPLMRAVP------PRRMSSNISTMKQASTQVPRVAPHSQR 482
Query: 504 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFR-------DAAFSQPMQTGAL-- 554
I G P M P+ R + Q M+ L
Sbjct: 483 VANI-----GTQTAGARAQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQ 537
Query: 555 ------ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 608
AS+LA+A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+LESP
Sbjct: 538 GQEPLTASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESP 597
Query: 609 EALKAKVAEAMEVLR 623
E+L +KV EA+ VL+
Sbjct: 598 ESLHSKVEEAVAVLQ 612
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/595 (46%), Positives = 373/595 (62%), Gaps = 63/595 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ L++ F+ G VVS+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 ASLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF L G+PIRIM+S RDP++R+SG GNIFIKNLDK+IDNKA++DTFS FGNILSCKV
Sbjct: 72 SMNFDVLRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAFGNILSCKV 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL--RKQERESTADKTR 217
A D G S+GYGFV F+ EESA +AI K+NGMLLN K+VFVG F+ + +ERE
Sbjct: 132 AQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFIPRKDRERELGEKAKY 191
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN + ++ L + F ++G +TS VM DGKS+ FGFV ++DPD A R+ +
Sbjct: 192 FTNVYIKNFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVCYEDPDAAERACD 251
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
++ K + K +VG+AQK+ ER+ EL+ KFEQ E ++++G+NLYVKNLDD+I D++
Sbjct: 252 DMHAKDMNGKTLFVGRAQKRNERQTELRRKFEQMKIERLNRYQGVNLYVKNLDDTIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ +GTITS KVM + G GFV FS+ EEA+KA+TEMNG+++VSKPLYVALA
Sbjct: 312 LRKEFAPYGTITSAKVMTEGGRNKGGFGFVCFSSPEEATKAVTEMNGRILVSKPLYVALA 371
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
QRKE+R+A+L M+ G RM +GQ QPG
Sbjct: 372 QRKEDRKAQLASQYMQRMAGMRMQQ-------MGQMF-----------QPG--------- 404
Query: 458 GMRPNYFVPM-VQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRI-------YR 509
P YF+P +QP Q+ P + Q R PR ++
Sbjct: 405 --GPGYFMPAPIQP-----------------QRFYTPAQMAQFRATPRWSAQPQPRPGFK 445
Query: 510 YPPGCNIPDVPVAG-VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRT 568
+ P P P G +P + G GGM A Q AS LA+A+P Q+
Sbjct: 446 FTPAMRNP--PSQGSLPSNAMGGS-AAGGM---QQALVVQGQEPLTASMLASAAPNDQKQ 499
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+LGE L+PL+ ++ D A K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL+
Sbjct: 500 MLGERLFPLIQRMYPDMAGKITGMLLEIDNSELLHMLEHNESLKAKVDEAVAVLQ 554
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V + R G+G+V +++ EAT
Sbjct: 292 RYQGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMTE-GGRNKGGFGFVCFSSPEEAT 350
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N L KP+ + + R
Sbjct: 351 KAVTEMNGRILVSKPLYVALAQR 373
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 280/604 (46%), Positives = 383/604 (63%), Gaps = 37/604 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A++AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG I S VMRD G S+ FGFVNF+ +DA ++V
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR P +G P P V Q +Y GPP+ P
Sbjct: 370 RKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFLPAVPQPPAQSPYYASGPPVQP 429
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
P P + Q RP+ +V+P ++RP + P+ ++Q + + PR +P+
Sbjct: 430 P-PRWTAQPP-----RPS-CASVVRPAAVSRRP------SVPISSSRQ-VSIHVPRPVPQ 475
Query: 505 GR-IYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMP----FRDAAFSQPMQTGALASALA 559
+ + P V P G L ++ P Q AS LA
Sbjct: 476 TQGVANIGTQTTGPGVMGCATPSGPLLTHKCCSATHNSPRVQEPGVRVPRQEPLTASVLA 535
Query: 560 NASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AKV EA+
Sbjct: 536 AAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLLEIDNSELLLMLESPESLSAKVEEAL 595
Query: 620 EVLR 623
VL+
Sbjct: 596 AVLQ 599
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S S G+G+VN+ +
Sbjct: 185 ARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSG-HSRGFGFVNFEKHED 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ ++N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVTDMNGKEVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L F+ +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFAPYGMITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYIQRLS 387
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 286/633 (45%), Positives = 384/633 (60%), Gaps = 61/633 (9%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TRRS Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S DP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRM----------PMYPP------ 425
ALAQRKEER+A L M+ PP G M YPP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQIARL 425
Query: 426 ------VAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRP-NYFVPMVQPGQQNQRPG 478
A G F + I P P + MRP + VP V Q+
Sbjct: 426 RPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFST-----MRPASSQVPRVMSTQRVANTS 480
Query: 479 GRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGM 538
+ G P A P + R +PR Y+Y G P + P + P
Sbjct: 481 TQTVGPRPAAAAAAATPAV--RTVPR---YKYAAGVRNPQQHLNAQPEVTMQQP------ 529
Query: 539 PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
A Q +T AS LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D
Sbjct: 530 ----AVHVQGQET-LTASMLASAPPQKQKQMLGERLFPLIEAMRPTLAGKITGMLLEIDN 584
Query: 599 TEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
+E+LH+LESPE+L +KV EA+ VL+ ++AT
Sbjct: 585 SELLHMLESPESLGSKVDEAVAVLQAHQAKEAT 617
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/639 (44%), Positives = 384/639 (60%), Gaps = 67/639 (10%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TRRS Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S DP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR----------PPVGPRMP-------------------MYPP 425
ALAQRKEER+A L M+ P + P P YPP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNHAAYYPP 425
Query: 426 ------------VAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRP-NYFVPMVQPGQ 472
A G F + I P P + MRP + VP V Q
Sbjct: 426 SQIAQLRPSPCWTAQGARPHPFQNKPSAICPAAPRVPFST-----MRPASSQVPRVMSTQ 480
Query: 473 QNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGP 532
+ + G P A P + R +PR Y+Y G P + P + P
Sbjct: 481 RVANTSTQTVGPRPAAAAAAATPAV--RTVPR---YKYAAGVRNPQQHLNAQPEVTMQQP 535
Query: 533 YDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGM 592
A Q +T AS LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 536 ----------AVHVQGQET-LTASMLASAPPQKQKQMLGERLFPLIEAMRPTLAGKITGM 584
Query: 593 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
LLE+D +E+LH+LESPE+L +KV EA+ VL+ ++AT
Sbjct: 585 LLEIDNSELLHMLESPESLGSKVDEAVAVLQAHQAKEAT 623
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 283/610 (46%), Positives = 381/610 (62%), Gaps = 47/610 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+++F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 438
RKEER+A L + S MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 439 GPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
G P+ P QP + Q RP+ + P + ++QA +P
Sbjct: 424 G-PVTPTQPAPRWTSQ---PPRPS----CASMVRPPVVPRRPPAHISSVRQASTQVPRTV 475
Query: 499 P---RMLPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA 553
P R+ G P GC P P+ +P + ++ A P Q
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTPGRPL--LPCKCSSAAHST--YRVQEPAVHIPGQEPL 531
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L A
Sbjct: 532 TASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHA 591
Query: 614 KVAEAMEVLR 623
K+ EA+ VL+
Sbjct: 592 KIDEAVAVLQ 601
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L +LF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 305/639 (47%), Positives = 402/639 (62%), Gaps = 51/639 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCK+
Sbjct: 77 MNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIV 136
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR-F 218
D G SRGYGFV F+ EE+A+ AI+K+NGMLLN K+VFVG F+ ++ER E DK R F
Sbjct: 137 CDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKF 195
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR-DADGKSKCFGFVNFDDPDDAARSVE 277
NNVYVKN SE ++ L+ +F +G I S VM D GK K FGFV+F+DP+ A ++VE
Sbjct: 196 NNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVE 255
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
ALNG K YVG+AQKK ER+ ELK KFE+ E ++++G+NLYVKNLDD+I D++
Sbjct: 256 ALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDER 315
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F++FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++VV+KPLYVALA
Sbjct: 316 LRKEFAQFGTITSAKVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALA 374
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQ--QLFY----GQGPPIIPPQPGFGY 451
QRKE+R+A L M+ RM +GQ Q+F G P +P +
Sbjct: 375 QRKEDRKAHLASQYMQRITSMRMQ-----GQQIGQVSQMFQPGSAGYFVPTMPQAQRTYF 429
Query: 452 QQQLVPGMRPN-----YFVPMVQPGQ-----------QNQRPGGR---RSGTG--PMQQA 490
+P MR N P QPG + QRP G+ R+G P+
Sbjct: 430 TPNNMPAMRSNPRWQTTVRPTGQPGSGFQTMPGAPQIRQQRPTGQTNVRAGVSARPI-TG 488
Query: 491 QQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAG-------VPGGMLPGPYDIGGMPFRDA 543
Q P Q RM ++ P G P VP A GG G P
Sbjct: 489 QSGTPNAQQRMPVNQQVGGRPQGGQ-PTVPAAANRQQGYKSYGGGQMMKQQPGQTPGMQQ 547
Query: 544 AFSQPM----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQT 599
A Q + Q A+ LA A P++Q+ +LGE L+PL+ + D A K+TGMLLE+D +
Sbjct: 548 APPQAVIVQGQDPLTATMLATAPPQEQKQMLGERLFPLISTMFPDLAGKITGMLLEIDNS 607
Query: 600 EVLHLLESPEALKAKVAEAMEVLR-NVAQQQATGPSPTD 637
E+LH+LES E+L+AKV EA+ VL+ + A++ AT P +
Sbjct: 608 ELLHMLESQESLEAKVKEAVAVLQAHQAKESATTTKPAE 646
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F Q G + S +V + RS G+G+V +++ EAT
Sbjct: 296 RYQGVNLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTEGG--RSKGFGFVCFSSPEEAT 353
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 354 KAVTEMNGRIVVAKPLYVALAQR 376
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 294/647 (45%), Positives = 382/647 (59%), Gaps = 46/647 (7%)
Query: 12 VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV 71
A AQP+P + G + S SLYVG+LD SV ++ L+++FN +G V S+RV
Sbjct: 36 AAKPAQPAPTST-------TGQQQPGNSASLYVGELDPSVTEAMLFEIFNMVGPVASIRV 88
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD TRRSLGY YVNY A + RAL+ LN++ + +P RIM+S RDP +RK+G GNIF
Sbjct: 89 CRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIF 148
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
IKNLD IDNKALHDTF+ FGNILSCKVATD G SRG+ FV ++ E+A +AI +NGM
Sbjct: 149 IKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGM 208
Query: 192 LLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLNDK+V+VG + K+ER+S ++ R F N+++KNL T+ DL+ +F FG I S A
Sbjct: 209 LLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAA 268
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+ DG SK F FVN+ D A ++V+ LN K+ + K+ YVG+AQK+ ER+ EL+ E
Sbjct: 269 LSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHE 328
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
+ E K G+NLYVKN+DD DD+L+ F GTITS KVMRD G SRG GFV F
Sbjct: 329 ERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCF 388
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPG 429
S +EA++A+ EMNGKM+ +KPLYV+LAQ+KE RR L+ SQM+ R+ A G
Sbjct: 389 SQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALE-SQMQQRNAQRLQY--AAANG 445
Query: 430 LGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNY--FVPMVQPGQQNQRPGGRRSGTGPM 487
LG Y Q P PP +G V G Y PM+ G R P
Sbjct: 446 LGGPQGYMQAPMYYPPMGPYGGPMMPVRGGVVGYPGAPPMM---------GARPGRYPPS 496
Query: 488 QQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVA-----------GVPGGMLPGPYDIG 536
Q P+P+ M P G YP N P P G P G G G
Sbjct: 497 GQPGAPVPMGY--MPPGGAGGNYPGMPNYPVRPAGNARPPTAARPNGSPSGAQQG-LPRG 553
Query: 537 GMPFR------DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVT 590
+P R AA QP T A ALA ASP +QR +LGE +YPL+ + + + A K+T
Sbjct: 554 QVPARPQGDGAQAAAGQPRLT---AQALARASPGEQRQMLGEAIYPLIHESQPELAGKIT 610
Query: 591 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 637
GMLLEMD E+LHL+ESP AL KV EA+ VL + + P+ +
Sbjct: 611 GMLLEMDNAELLHLVESPAALTEKVDEALRVLEDWGKNDEEKPAAAE 657
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 293/644 (45%), Positives = 393/644 (61%), Gaps = 74/644 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EESA ++I+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 QDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN + ++ LK++F ++G ITS VM DGKS+ FGFV F++P+ A +V+
Sbjct: 183 TNVYVKNFGDELNDETLKEMFEKYGTITSHRVM-IKDGKSRGFGFVAFENPESAEHAVQE 241
Query: 279 LNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+MELK +FEQ E +++G+NLYVKNLDDSI D++
Sbjct: 242 LNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDER 301
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS AEEA+KA+TEMNG++V SKPLYVALA
Sbjct: 302 LRKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALA 360
Query: 398 QRKEERRARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIP--PQPGFGYQQQ 454
QRKE+R+A L M+ RM M PG G G +P PQP + +Q
Sbjct: 361 QRKEDRKAHLASQYMQRMANMRMQHMGQIFQPG-------GNGGYYVPTLPQPQRFFSKQ 413
Query: 455 LVPGMR--PNYF--------------------VPMVQPGQQNQRPGGRRSGTGP------ 486
V +R P +F + G Q ++ R+
Sbjct: 414 -VSQIRTTPGWFRANTNQNAVAANAAGGAYPAMAAATAGNQYRQAANVRANQPAPNAQAA 472
Query: 487 -------MQQAQQPIPLMQ-----------PRMLP-RGRIYRYPPGCNIPDVPVAGVPGG 527
M+ + +PI Q P+M + R Y N+ + P VP
Sbjct: 473 QAANAAAMRNSARPITGQQAGGNMQARPVAPQMAANQARAANYKYTQNMRNPPAQAVP-- 530
Query: 528 MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
+ P A Q AS LA A P +Q+ +LGE L+PL++ L A
Sbjct: 531 -------MAAQPVAQQAVHVKGQEPLTASMLAAAQPAEQKQMLGERLFPLIEPLYPTIAG 583
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
K+TGMLLE+D +E++H+LE E+LKAKV EA+ VL A QQ T
Sbjct: 584 KITGMLLEIDNSELVHMLEHSESLKAKVDEAVAVLH--AHQQKT 625
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 32/195 (16%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV + +ND L ++F + G + S RV + +S G+G+V + A A+
Sbjct: 183 TNVYVKNFGDELNDETLKEMFEKYGTITSHRVM--IKDGKSRGFGFVAFENPESAEHAVQ 240
Query: 100 ELNFTPLNGKPI---RIMYSYR--------------------DPTIRKSGAGNIFIKNLD 136
E LNGK + +I+Y R + R G N+++KNLD
Sbjct: 241 E-----LNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGV-NLYVKNLD 294
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SID++ L FS FG I S KV + G+S+G+GFV F E A A+ ++NG ++ K
Sbjct: 295 DSIDDERLRKEFSPFGTITSAKVMLEE-GRSKGFGFVCFSAAEEATKAVTEMNGRIVGSK 353
Query: 197 QVFVGPFLRKQERES 211
++V RK++R++
Sbjct: 354 PLYVALAQRKEDRKA 368
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S++D +L F+ G + S +V L RS G+G+V ++AA EAT
Sbjct: 282 RYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVM--LEEGRSKGFGFVCFSAAEEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 340 KAVTEMNGRIVGSKPLYVALAQR 362
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 283/610 (46%), Positives = 380/610 (62%), Gaps = 47/610 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 438
RKEER+A L + S MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 439 GPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
G P+ P QP + Q RP+ + P + ++QA +P
Sbjct: 424 G-PVTPTQPAPRWTSQ---PPRPS----CASMVRPPVVPRRPPAHISSVRQASTQVPRTV 475
Query: 499 P---RMLPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA 553
P R+ G P GC P P+ +P + ++ A P Q
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTPGRPL--LPCKCSSAAHST--YRVQEPAVHIPGQEPL 531
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L A
Sbjct: 532 TASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHA 591
Query: 614 KVAEAMEVLR 623
K+ EA+ VL+
Sbjct: 592 KIDEAVAVLQ 601
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/610 (46%), Positives = 380/610 (62%), Gaps = 47/610 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 438
RKEER+A L + S MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 439 GPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
G P+ P QP + Q RP+ + P + ++QA +P
Sbjct: 424 G-PVTPTQPAPRWTSQ---PPRPS----CASVVRPPAVPRRPPAHISSVRQASTQVPRTV 475
Query: 499 P---RMLPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA 553
P R+ G P GC P P+ +P + ++ A P Q
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTPGRPL--LPCKCSSAAHST--YRVQEPAVHIPGQEPL 531
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L A
Sbjct: 532 TASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHA 591
Query: 614 KVAEAMEVLR 623
K+ EA+ VL+
Sbjct: 592 KIDEAVAVLQ 601
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 293/647 (45%), Positives = 382/647 (59%), Gaps = 46/647 (7%)
Query: 12 VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV 71
A AQP+P + G + S SLYVG+LD SV ++ L+++FN +G V S+RV
Sbjct: 36 AAKPAQPAPTST-------TGQQQPGNSASLYVGELDPSVTEAMLFEIFNMVGPVASIRV 88
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD TRRSLGY YVNY A + RAL+ LN++ + +P RIM+S RDP +RK+G GNIF
Sbjct: 89 CRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIF 148
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
IKNLD IDNKALHDTF+ FGNILSCKVATD G SRG+ FV ++ E+A +AI +NGM
Sbjct: 149 IKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGM 208
Query: 192 LLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLNDK+V+VG + K+ER+S ++ R F N+++KNL T+ DL+ +F FG I S A
Sbjct: 209 LLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAA 268
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+ DG SK F FVN+ D A ++V+ LN K+ + K+ YVG+AQK+ ER+ EL+ E
Sbjct: 269 LSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHE 328
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
+ E K G+NLYVKN+DD DD+L+ F GTITS KVMRD G SRG GFV F
Sbjct: 329 ERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCF 388
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPG 429
S +EA++A+ EMNGKM+ +KPLYV+LAQ+KE RR L+ SQM+ R+ A G
Sbjct: 389 SQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALE-SQMQQRNAQRLQY--AAANG 445
Query: 430 LGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNY--FVPMVQPGQQNQRPGGRRSGTGPM 487
LG Y Q P PP +G V G Y PM+ G R P
Sbjct: 446 LGGPQGYMQAPMYYPPMGPYGGPMMPVRGGVVGYPGAPPMM---------GARPGRYPPS 496
Query: 488 QQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVA-----------GVPGGMLPGPYDIG 536
Q P+P+ M P G YP N P P G P G G G
Sbjct: 497 GQPGAPVPMGY--MPPGGAGGNYPGMPNYPVRPAGNARPPTAARPNGSPSGAQQG-LPRG 553
Query: 537 GMPFR------DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVT 590
+P R AA QP T A ALA ASP +Q+ +LGE +YPL+ + + + A K+T
Sbjct: 554 QVPARPQGDGAQAAAGQPRLT---AQALARASPGEQKQMLGEAIYPLIHESQPELAGKIT 610
Query: 591 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 637
GMLLEMD E+LHL+ESP AL KV EA+ VL + + P+ +
Sbjct: 611 GMLLEMDNAELLHLVESPAALTEKVDEALRVLEDWGKNDEEKPAAAE 657
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 284/619 (45%), Positives = 385/619 (62%), Gaps = 86/619 (13%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVN++ + RAL
Sbjct: 38 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERAL 97
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+T + GKP RIM+S RDP++RK+G+GN+FIKNLD SIDNKALHDTFS FGNILSCK
Sbjct: 98 ESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCK 157
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+A D G S+GYGFV ++ EE+A +AI ++GMLLNDK+V+VG + ++ER++ ++ R
Sbjct: 158 IALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQAKIEQIRA 217
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL E+ ++ K++F +FG ITS V D +GKSK FGF+NF++ +DA ++V
Sbjct: 218 KFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAV 277
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN + + K YV +AQKK ERE EL+ ++EQ+ E K++G+NLY+KNLDD I D+
Sbjct: 278 DTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDE 337
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL++ FS +G ITS KVM D G S+G GFV FS+ +EA+KA+TEMNG+M+ SKP+YVAL
Sbjct: 338 KLRQEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVAL 397
Query: 397 AQRKEERRARL-----QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 451
AQRKE RR++L Q +QMR G MPM P PG+
Sbjct: 398 AQRKEVRRSQLEAQMAQRNQMRMQQG--MPM---------------------PGAPGY-- 432
Query: 452 QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYP 511
+PG P ++ P PGQ M Q Q+P M+PR R +
Sbjct: 433 ----MPGA-PMFYAP---PGQF-------------MPQGQRPTVFAPNNMMPRPR---WA 468
Query: 512 PGCNIPDVPVAGVP-GGMLPGP---------YDIGGMPFRDAAFSQPMQTGALASALANA 561
P PVAG P G P GG + +Q Q A ASA A
Sbjct: 469 PQQG---QPVAGFPPQGFAPNSNVRPPRQPRAPRGGAAGQRKYANQSRQAPAAASAAAET 525
Query: 562 SP-----------------EQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
+ E Q+ +LGE LYPL++ + + A K+TGMLLEMD E+L+L
Sbjct: 526 AEGSAAAPLTAAALAAAAPETQKQMLGERLYPLINAQQPEYAGKITGMLLEMDNGELLNL 585
Query: 605 LESPEALKAKVAEAMEVLR 623
LE +AL +K+ EA+EVL+
Sbjct: 586 LEDSKALDSKINEAVEVLK 604
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 160/294 (54%), Gaps = 19/294 (6%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ S ++++ +LD S+++ L+D F+ G ++S ++ D S S GYG+V+Y A
Sbjct: 122 RKTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCKIALDESG-NSKGYGFVHYETEEAA 180
Query: 95 TRALDELNFTPLNGKPI----RIMYSYRDPTIRKSGA--GNIFIKNLDKSIDNKALHDTF 148
A+ ++ LN K + I R I + A N+++KNLD+SI+++ + F
Sbjct: 181 DNAIKHVDGMLLNDKKVYVGRHIPRKERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMF 240
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FG I S V TD G+S+G+GF+ F+N E A A+D LN N K ++V +K E
Sbjct: 241 SKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLNETEHNGKTLYVARAQKKTE 300
Query: 209 RESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE K ++ N+Y+KNL + ++ L++ F +G+ITS VM D G
Sbjct: 301 REEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKG 360
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
SK FGFV F PD+A ++V +NG+ K YV AQ+K R +L+ + Q
Sbjct: 361 TSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRKEVRRSQLEAQMAQ 414
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/609 (46%), Positives = 378/609 (62%), Gaps = 45/609 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ER E A F
Sbjct: 132 CDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD+ G+S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y +AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D KL
Sbjct: 251 MNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRVSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP---RM 501
QP + Q RP+ MV+P + P G ++QA +P P R+
Sbjct: 429 TQPAPRWTSQ---PPRPS-CASMVRPPVMPRCPPAH---IGGIRQASTQVPRTVPHTQRV 481
Query: 502 LPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPF-----RDAAFSQPMQTGAL 554
G P GC P P+ PY ++ A P
Sbjct: 482 ANIGTQTTGPSGVGCCTPGRPLL---------PYKCSSAAHSTDQVQEPAVHIPGHEPLT 532
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK
Sbjct: 533 ASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAK 592
Query: 615 VAEAMEVLR 623
+ EA+ VL+
Sbjct: 593 IDEAVAVLQ 601
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 31/218 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L V++ L DLF+Q G+++SV+V RD S+ RS +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-SSGRSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y+ R D R G N+++K
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID+ L FS +G I S KV T+ S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDGKLRKEFSPYGVITSAKVMTEG-SHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ +S T
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRVSTMRT 391
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 279/634 (44%), Positives = 394/634 (62%), Gaps = 80/634 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL+ V ++ L++ F+Q G V+S+RVCRDL TRRSLGY YVN+ +A RA+D
Sbjct: 12 SLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAERAIDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ P+ G+P RIM+S RDPT+R+SG GNIFIKNLDK+IDNK L+D FS FGNILSCK+A
Sbjct: 72 MNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAFGNILSCKIA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKT-RF 218
DS SRGYGFV ++ +E+A AI K+NGM+LNDK+VFVG F+ K+ER E D+ +F
Sbjct: 132 VDSKNVSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLEKLGDQAKKF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV+VKN ++ E+ LK++FG+ G ITS VM ++ GKSK FGFV F+ P+ A +V
Sbjct: 192 KNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVMAES-GKSKGFGFVAFEAPEAAEAAVNE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG + + ++ V +AQKK ER MELK +FE E ++++G+NLY+KNL+D + D++L
Sbjct: 251 LNGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVNLYIKNLEDGLDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS +GTITS KVM+D GIS+G GFV FS+ +EA+KA+TEMNG+++V+KPLYVALAQ
Sbjct: 311 RSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRILVTKPLYVALAQ 370
Query: 399 RKEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
RKEERRA+L QF Q P L Y + PQ G+ +Q
Sbjct: 371 RKEERRAQLSTQFLQRVNP------------------LRYNASGTM--PQAGYSFQ---- 406
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSG---TGPMQQAQQPIPLM---------------- 497
+P +++P V NQRP +S T P Q+Q P+ +
Sbjct: 407 -AGQPGFYIPTV---PTNQRPFITQSVNQITRPRWQSQAPVQQIPANTQYASHVTQIRAG 462
Query: 498 ----QPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFS------- 546
+PR + R P P + +P +P ++ + + A+
Sbjct: 463 AAPPRPRHQGAPNVARREPAPYQPGMGTRTMPSQQVPIRPNVPAVAQQRTAYKYNPNTRN 522
Query: 547 ---------QPMQTGAL--------ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
QP Q A+ ++ LA A+P +Q+ ++GE L+PLV + + A K+
Sbjct: 523 QYPAGQMIGQPDQAAAIIQGPDQLTSTILATATPTEQKQMIGERLFPLVQEFQPHLAGKI 582
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
TGMLLE+D +E+LH+LES + L+AKV EA++VL+
Sbjct: 583 TGMLLEIDNSELLHMLESRDLLRAKVEEAVQVLQ 616
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 17/199 (8%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ST ++YV +L+ TE L + F + G + S V RD +S + +VNF
Sbjct: 2 QSTTQNYPIASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQ 61
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
P DA R+++ +N + + +Q+ + +L+ + N+++KN
Sbjct: 62 PADAERAIDTMNYDPIKGRPCRIMWSQR------------DPTLRRSGVG----NIFIKN 105
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LD +I + L + FS FG I SCK+ D +SRG GFV + T E A +A+ ++NG M+
Sbjct: 106 LDKNIDNKGLYDAFSAFGNILSCKIAVDSKNVSRGYGFVHYETKEAAHEAIAKVNGMMLN 165
Query: 389 SKPLYVALAQRKEERRARL 407
K ++V K ER +L
Sbjct: 166 DKKVFVGEFMSKRERLEKL 184
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFS 370
++ T + +LYV +L+ +++ L E FS+ G + S +V RD S G +V F
Sbjct: 1 MQSTTQNYPIASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQ 60
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQR 399
+A +A+ MN + +P + +QR
Sbjct: 61 QPADAERAIDTMNYDPIKGRPCRIMWSQR 89
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 288/620 (46%), Positives = 390/620 (62%), Gaps = 52/620 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN++ +A RALD
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ LK++F ++G S VM D GKS+ FGFV+++ +DA ++VE
Sbjct: 191 TNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVED 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + K +VG+AQKK ER+ ELK KFE +E +++G+NLY+KNLDD+I D+KL
Sbjct: 251 MNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPR-MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
RKEER+A L M+ G R MP A + Q QP GY VP
Sbjct: 370 RKEERKAHLTNQYMQRIAGMRAMP-----ANTIINQF-----------QPTSGYFMPAVP 413
Query: 458 GM--RPNYFVPMVQPGQQNQRPGGR-RSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 514
R Y+ P Q Q RP R + G P L QP PRG + + P
Sbjct: 414 QAQNRTTYYAPN-QLAQ--MRPNPRWQQQGGRGGFQGMPNTLRQPG--PRGNMRQMTPNS 468
Query: 515 N----------IPDVPVAGVPGGMLPGPYDIG-GMPFRDAAFSQPM-----------QTG 552
+ + P GVPG PY G+ + QP+ Q
Sbjct: 469 SSQGPRGSAQTMAPRPSMGVPGPRNVTPYKYATGVRNPNPQVVQPIALQQPAVHVQGQEP 528
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
S LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LES E+L+
Sbjct: 529 LTPSMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLR 588
Query: 613 AKVAEAMEVLR-NVAQQQAT 631
+KV EA+ VL+ + A++ AT
Sbjct: 589 SKVEEAVAVLQAHQAKKDAT 608
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 322/754 (42%), Positives = 416/754 (55%), Gaps = 157/754 (20%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNG----IANNGGVGDARQFV----------STSLYVGDL 47
A+ P A P ATNG IA + G+A Q S SLYVG+L
Sbjct: 3 AETATNPPVDTTPGAAPESATNGSNANIAADTTAGEASQTTSSTTPTAQPHSASLYVGEL 62
Query: 48 DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107
D SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T +
Sbjct: 63 DPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIK 122
Query: 108 GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS 167
G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S
Sbjct: 123 GRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS 182
Query: 168 RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKN 225
+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S + K F NVYVKN
Sbjct: 183 KGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKN 242
Query: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKF 284
+ + TTE++ + +F +FG ITS + RDA+ GKS+ FGFVNF D+AA +VEALN K F
Sbjct: 243 IDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDF 302
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D+KL+ELFS
Sbjct: 303 KGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSS 362
Query: 345 FGTITSCKVMRD------------------------------------------------ 356
+GTITS KVMRD
Sbjct: 363 YGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESK 422
Query: 357 -----PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS- 410
P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S
Sbjct: 423 KSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASI 482
Query: 411 QMRPPVG----------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQ-PGFGYQQQLVPGM 459
Q R + P+ M P V G GQQ F IP Q G +QQ PG
Sbjct: 483 QARNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQNF-------IPNQRGGMPFQQ---PG- 531
Query: 460 RPNYFVPMVQPGQQNQRPGGRRSGT------------GPMQQ--------AQQPIPL-MQ 498
MV PG PGGR P QQ Q +P+ MQ
Sbjct: 532 -------MVIPGM----PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPMGMQ 580
Query: 499 PRMLPRGRIY------RYPPGCNIPDVPVA-GVP---GGMLPGPYDIGGMPFRDAAFSQP 548
+P G Y + P G P G+P GM PG GMP + +P
Sbjct: 581 GAGIPNGLNYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQ-GMGRP 639
Query: 549 MQTG--------ALASALANASPE-------------QQRTLLGENLYPLVDQLEHDNAA 587
Q G A+ NASP QQ+ +LGE +YP + + + A
Sbjct: 640 GQAGRGQGAPAQAVGQRDENASPSGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAG 699
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 700 KITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 296/631 (46%), Positives = 389/631 (61%), Gaps = 51/631 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ +G VVSVRVCRD TRRSLGY YVN+ +A ALD
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSAVGVVVSVRVCRDNITRRSLGYAYVNFQNMADAECALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF LNG P+RIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFEILNGCPMRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D GQS+GYGFV FD E+SA +I+K+NGMLLN K+VFVG F+ +++RE + F
Sbjct: 123 QDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN+ E + +L ++F ++G ITS VM DG S+ FGFV F+DP +A ++V
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSE 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+GK+ + K +YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D+
Sbjct: 243 LHGKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKNLDDTIDDEH 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS FGTITS KVM D +G S+G GFV FS+ EEA+KA+TEMN ++V +KPLYVALA
Sbjct: 303 LRREFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVALA 361
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPPVA------PGLGQ-QLFYGQGPPI-IPP 445
QRKEER+A L ++ RM P+Y P A P + Q Q FYG I P
Sbjct: 362 QRKEERKAHLNAQYLQSNTNMRMQSIGPIYQPGASSGYFVPTIPQGQRFYGPAQMTQIRP 421
Query: 446 QPGFGYQQQL-------VPGMRPNYFVPMVQPGQQNQRPGGRRSG-TG---------PMQ 488
QP + Q Q+ PN G + P G+++ TG P+
Sbjct: 422 QPRWASQPQVRIATPQNAAAGHPNMATQYRNIGARAPVPAGQQAAFTGNSMVNRNSRPIS 481
Query: 489 QAQQPIP-------LMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG---MLPGPYDIGGM 538
AQQ IP + P G Y+Y P G+ P P
Sbjct: 482 TAQQQIPGAVSAGSVRVPSARSSGSGYKYTANMRNPPGEAQGMGQAQPRQPPAPV----- 536
Query: 539 PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
AA Q AS LA+A PE Q+ +LGE L+PL+ ++ K+TGMLLE+D
Sbjct: 537 ---QAALHVHGQEPLTASMLASAKPEDQKQMLGERLFPLIQRIYPKFTGKITGMLLEIDN 593
Query: 599 TEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
+EVLH+LE E+LK KV EA+ V++ QQ
Sbjct: 594 SEVLHMLEHQESLKIKVQEAVAVIQAHQTQQ 624
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 21/190 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRAL 98
T++Y+ ++D +VND +L+++F + G + S +V +D + R G+G+V + EA +A+
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSR--GFGFVAFEDPKEAEKAV 240
Query: 99 DELNFTPL-NGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
EL+ GK R Y+ + + N+++KNLD +ID+
Sbjct: 241 SELHGKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKNLDDTIDD 300
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
+ L FS FG I S KV D G+S+G+GFV F + E A A+ ++N ++ K ++V
Sbjct: 301 EHLRREFSVFGTITSAKVMMDD-GRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVA 359
Query: 202 PFLRKQERES 211
RK+ER++
Sbjct: 360 LAQRKEERKA 369
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D L F+ G + S +V D RS G+G+V +++ EAT
Sbjct: 283 RYQGINLYVKNLDDTIDDEHLRREFSVFGTITSAKVMMD--DGRSKGFGFVCFSSPEEAT 340
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 341 KAVTEMNNRIVGTKPLYVALAQR 363
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 285/610 (46%), Positives = 379/610 (62%), Gaps = 49/610 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F G ++S+RVCRD++TRRSL Y Y+N+ +A RALD
Sbjct: 12 SLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELRARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VM+D +G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ ++ YVG+AQK+ ER+ ELK KFEQ ++ ++++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG+++ +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 438
RKEERRA L + S MR P +G P MP P A +YG
Sbjct: 370 RKEERRAILSNQYMQRLSTMRALGVPLLGSSQQPTSYFLPAMPQPPARAA------YYGS 423
Query: 439 GP-PIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQ-QAQQPIPL 496
G I P P + Q RP+ MV+P +RP + S Q P+P
Sbjct: 424 GSVATIQPAPRWAAQPP-----RPS-CASMVRPPATPRRPLAQLSTVRQASTQVPHPVPH 477
Query: 497 MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFR-DAAFSQPM--QTGA 553
Q R+ G P G G G L PY PM Q
Sbjct: 478 TQ-RVANIGTQTTGPGGAE-------GCTSGQLLLPYRHSSAAHNVHRVLESPMHRQEPL 529
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
AS LA A P +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L+A
Sbjct: 530 TASMLAAALPHEQKQMIGERLYPLIYGVYPHLAGKITGMLLEIDNSELLLMLESPESLQA 589
Query: 614 KVAEAMEVLR 623
K+ EA+ VL+
Sbjct: 590 KIEEAVAVLQ 599
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 23/210 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + +++ L DLF+Q G+++SV+V +D + S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKD-NNGHSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+ ++N ++G+ + R + + + N+++KNLD
Sbjct: 244 AQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYVKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKP 362
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER + +N Y++ LS
Sbjct: 363 LYVALAQRKEERRAI-----LSNQYMQRLS 387
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 309/703 (43%), Positives = 400/703 (56%), Gaps = 143/703 (20%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKN+ + TTE++ + +F +FG ITS + RDA+ GKS+ FGFVNF D+AA +
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN K F ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 336 DKLKELFSEFGTITSCKVMRD--------------------------------------- 356
+KL+ELFS +GTITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 357 --------------PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 403 RRARLQFS-QMRPPVG----------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQ-PGFG 450
RR++L+ S Q R + P+ M P V G GQQ F IP Q G
Sbjct: 474 RRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQNF-------IPNQRGGMP 526
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT------------GPMQQ--------A 490
+QQ PG MV PG PGGR P QQ
Sbjct: 527 FQQ---PG--------MVIPGM----PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIG 571
Query: 491 QQPIPL-MQPRMLPRGRIY------RYPPGCNIPDVPVA-GVP---GGMLPGPYDIGGMP 539
Q +P+ MQ +P G Y + P G P G+P GM PG GMP
Sbjct: 572 AQGLPMGMQGAGIPNGLNYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMP 631
Query: 540 FRDAAFSQPMQTG--------ALASALANASPE-------------QQRTLLGENLYPLV 578
+ +P Q G A+ NASP QQ+ +LGE +YP +
Sbjct: 632 VQQ-GMGRPGQAGRGQGAPAQAVGQRDENASPSGLTLQVLNAAPPAQQKQMLGEAIYPKI 690
Query: 579 DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
+ + A K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 691 QAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 284/639 (44%), Positives = 382/639 (59%), Gaps = 67/639 (10%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TRRS Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S DP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G SRG GFV FS+ EEA+KA+TEMNG +V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR----------PPVGPRMP-------------------MYPP 425
+LA RKEER+A L M+ P + P P YPP
Sbjct: 366 SLAHRKEERQAYLTNEYMQRMAGVRAVPNPVINPYQPAPPSGYFMAAVPQTQNHAAYYPP 425
Query: 426 ------------VAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRP-NYFVPMVQPGQ 472
A G F + I P P + MRP + VP V Q
Sbjct: 426 SQIAQLRPSPCWTAQGARPHPFQNKPSAICPAAPRVPFST-----MRPASSQVPRVMSTQ 480
Query: 473 QNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGP 532
+ + G P A P + R +PR Y+Y G P + P + P
Sbjct: 481 RVANTSTQTVGPRPAAAAAAATPAV--RTVPR---YKYAAGVRNPQQHLNAQPEVTMQQP 535
Query: 533 YDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGM 592
A Q +T AS LA+A P++Q+ +LGE L+PL++ + A K+TGM
Sbjct: 536 ----------AVHVQGQET-LTASMLASAPPQKQKQMLGERLFPLIEAMRPTLAGKITGM 584
Query: 593 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
LLE+D +E+LH+LESPE+L +KV EA+ VL+ ++AT
Sbjct: 585 LLEIDNSELLHMLESPESLGSKVDEAVAVLQAHQAKEAT 623
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 309/703 (43%), Positives = 400/703 (56%), Gaps = 143/703 (20%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKN+ + TTE++ + +F +FG ITS + RDA+ GKS+ FGFVNF D+AA +
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN K F ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 336 DKLKELFSEFGTITSCKVMRD--------------------------------------- 356
+KL+ELFS +GTITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 357 --------------PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 403 RRARLQFS-QMRPPVG----------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQ-PGFG 450
RR++L+ S Q R + P+ M P V G GQQ F IP Q G
Sbjct: 474 RRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQNF-------IPNQRGGMP 526
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT------------GPMQQ--------A 490
+QQ PG MV PG PGGR P QQ
Sbjct: 527 FQQ---PG--------MVIPGM----PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIG 571
Query: 491 QQPIPL-MQPRMLPRGRIY------RYPPGCNIPDVPVA-GVP---GGMLPGPYDIGGMP 539
Q +P+ MQ +P G Y + P G P G+P GM PG GMP
Sbjct: 572 AQGLPMGMQGAGIPNGLNYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMP 631
Query: 540 FRDAAFSQPMQTG--------ALASALANASPE-------------QQRTLLGENLYPLV 578
+ +P Q G A+ NASP QQ+ +LGE +YP +
Sbjct: 632 VQQ-GMGRPGQAGRGQGAPAQAVGQRDENASPNGLTLQVLNAAPPAQQKQMLGEAIYPKI 690
Query: 579 DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
+ + A K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 691 QAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 277/600 (46%), Positives = 373/600 (62%), Gaps = 30/600 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ A +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRM-------PMYPPVAPGLGQQLFYGQGPPIIPP 445
RKEER+A L + S +R GP + + P P Q Y P + P
Sbjct: 370 RKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQAAYYASSPSVQP 429
Query: 446 QPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRG 505
P + Q V MV+P +RP + ++QA +P P
Sbjct: 430 APRWTAQPPRVSS------ASMVRPPAMLRRPPAQ---VNSVRQASTQVPPPGPHTQRVA 480
Query: 506 RIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMP--FRDAAFSQPMQTGALASALANASP 563
I G + V + G +L Y R++A P Q AS LA A
Sbjct: 481 NIGTQTTGAS--GVGYSTPTGPVLTHKYSSAAHNPGVRESAVCIPGQEPLTASMLAAAPL 538
Query: 564 EQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+Q+ ++GE LYPL+ A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL+
Sbjct: 539 HEQKQMIGERLYPLIYDTHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAVLQ 598
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DIGHSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ ++N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVMDMNGKEVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/608 (46%), Positives = 378/608 (62%), Gaps = 41/608 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIRGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D+ G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRREREAELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RREFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S +R GP + + P V Q +Y P +
Sbjct: 370 RKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQTAYYASSSP-MQ 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVP----MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPR 500
P P + Q RP+ P M++P +RP + SG ++QA +P P
Sbjct: 429 PAPRWTAQPP-----RPSSTYPPAASMIRPPAMLRRPPAQVSG---VRQASTQVPPTVPH 480
Query: 501 MLPRGRIYRYPPGCNIPDVPVAGVP---GGMLPGPYDIG--GMPFRDAAFSQPMQTGALA 555
I G AG P G +L Y ++ A P Q A
Sbjct: 481 TQRVANI-----GTQTTGASGAGYPAPSGPLLTHKYSSATYNHGVQEPAVRIPGQEPLTA 535
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S LA A +Q+ ++GE LYPL+ A K+TGMLLE+D +E+L +LESPE+L AKV
Sbjct: 536 SMLAAAPLHEQKQMIGERLYPLIYDAHTQLAGKITGMLLEIDNSELLLMLESPESLNAKV 595
Query: 616 AEAMEVLR 623
EA+ VL+
Sbjct: 596 EEALAVLQ 603
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 116/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSG-HSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ ++N + G R++Y R D R G N+++K
Sbjct: 244 AQKAVTDMNGKEVRG---RLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRREFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 292/639 (45%), Positives = 382/639 (59%), Gaps = 72/639 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS +G ITS KVM D G S+G GFV F+ EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRVAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPV-APGLGQQLFYGQGPPIIPPQPGFGYQQ--- 453
QRKEER+A L MR G RM + P F P + Q FG Q
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQIFQPNTASGFFV---PTLQSNQRFFGSQVATQ 419
Query: 454 -----QLVPGMRP--------------------NYFVPM-----------VQPGQQ---- 473
+ VP +RP VP QP Q
Sbjct: 420 MRNTPRWVPQVRPPAAVQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHA 479
Query: 474 ------NQRPGGRRSGTGPMQQAQQP---IPLMQPRMLPRGRIYRYPPGCNIPDVPVAGV 524
N R G R+ TG QQ P IP Q + R Y N+ + PV +
Sbjct: 480 AAAAANNMRNTGARAITG--QQTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVQQL 537
Query: 525 PGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHD 584
P P + G S+ + LA NA P++Q+ +LGE LYP+++ + +
Sbjct: 538 HQTQ-PIPQQLQGKN------SEKLIASLLA----NAKPQEQKQILGERLYPMIEHMHAN 586
Query: 585 NAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
A K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+
Sbjct: 587 LAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 276/622 (44%), Positives = 378/622 (60%), Gaps = 60/622 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSL Y Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPMYPPVA-------PGLGQQLFYGQGPPI-IP 444
RKEER+A L + + MR GP + + A P + FY P +
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLSAMPQPPNRTFYSPNPVAPVR 429
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL-------- 496
P P + Q P +P P+++ Q P S M+QA +P
Sbjct: 430 PAPQWASHQSRPPQYQPP--TPLMRAVQ----PRRMSSNISTMKQASTQVPRVAQHSQRV 483
Query: 497 -------------MQPRMLPRGRIYRYPPGC-NI-PDVPVAGVPGGMLPGPYDIGGMPFR 541
+ P M+ Y+Y G N+ P V + M P G P
Sbjct: 484 ANIGTQTAGARAQVNPSMMRTMPHYKYSCGVRNVQPIVSSTHLQQVMEPAVLMQGQEPL- 542
Query: 542 DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
AS LA A P++Q+ +LGE +YP++ ++ A K+TGMLLE+D +E+
Sbjct: 543 ------------TASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSEL 590
Query: 602 LHLLESPEALKAKVAEAMEVLR 623
LH+LESPE+L +KV EA+ VL+
Sbjct: 591 LHMLESPESLHSKVEEAVAVLQ 612
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 302/689 (43%), Positives = 395/689 (57%), Gaps = 123/689 (17%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 49 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 108
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 109 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 168
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 169 VAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 228
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+ T+++ +++FG++G ITS + RD GKS+ FGFVN+ D +A +V
Sbjct: 229 NFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAV 288
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN K F ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D + DD
Sbjct: 289 DELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDD 348
Query: 337 KLKELFSEFGTITSCKVMRDPNGI------------------------------------ 360
KL+ELFS FGTITS KVMRD G+
Sbjct: 349 KLRELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEETKVKAEDEEKT 408
Query: 361 ------------SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ R+++L+
Sbjct: 409 ETKKPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLE 468
Query: 409 FS-QMRPPVG----------PRMPMYPPVAPGLGQQLFY----GQGPPIIPPQPGFGYQQ 453
S Q R + P+ M P V G GQQ F GQ PQPG
Sbjct: 469 ASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFLPANAGQRGLGFAPQPGM--VM 526
Query: 454 QLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQ------PIPLMQ--PRMLPRG 505
+PG RP + PG Q+ GGR G GP QQ Q PI MQ P +P G
Sbjct: 527 AGIPGGRPGQY-----PGGFPQQ-GGRGIG-GPNQQIPQNFGQGIPIGAMQAGPGGIPNG 579
Query: 506 RIYRYPPGCNIPDVPVAG----VPGGMLPGPYDI-------------------------- 535
YP + AG VP G+ P
Sbjct: 580 MA--YPQMAQVQFGRGAGGRGQVPQGIPPNVGGPRGGPGFGQGRGGMPPRPGPGGRGQNV 637
Query: 536 -GGMPF--RDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGM 592
G P A S +QT L+ A P+QQ+ +LGE LYP + + + A K+TGM
Sbjct: 638 PAGAPVAPEGAPGSLTLQT------LSAAPPQQQKQMLGEALYPKIQAQQPELAGKITGM 691
Query: 593 LLEMDQTEVLHLLESPEALKAKVAEAMEV 621
LLEMD E+L L++ AL+AKV EA+ V
Sbjct: 692 LLEMDNAELLGLIDDESALRAKVDEALHV 720
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 289/644 (44%), Positives = 383/644 (59%), Gaps = 82/644 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS +G ITS KVM D G S+G GFV F+ A EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQ 453
QRKEER+A L MR G RM +Y P A G P +P F +
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAAS-------GFFVPTLPSNQRF-FGS 414
Query: 454 QLVPGMRPN-YFVPMVQP------------------------------------------ 470
Q+ MR +VP V+P
Sbjct: 415 QVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQV 474
Query: 471 --------GQQNQRPGGRRSGTGPMQQAQQP---IPLMQPRMLPRGRIYRYPPGCNIPDV 519
N R G R+ TG QQ P IP Q + R Y N+ +
Sbjct: 475 QGTHAAAAAANNMRNTGARAITG--QQTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNP 532
Query: 520 PVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVD 579
PV + P P + G S+ + LA+A P++Q+ +LGE LYP+++
Sbjct: 533 PVPQLHQTQ-PIPQQLQGKN------SEKLIASLLANA----KPQEQKQILGERLYPMIE 581
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+
Sbjct: 582 HMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/405 (58%), Positives = 311/405 (76%), Gaps = 8/405 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE---AT 95
++SLYVGDLD V ++QL+++F+Q+G V S+RVCRD TRRSLGY YVNYN+ + A
Sbjct: 37 NSSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAE 96
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD+LN+TPL G+P+RIM+S+RDP RKSG GNIFIKNLD+S+DNKALHDTFS FGNIL
Sbjct: 97 RALDQLNYTPLVGRPMRIMWSHRDPAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNIL 156
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA D G+S+GYGFV F+ +ESA+ AI+K+NGMLL K+V+VGPFLR+ ER S ++
Sbjct: 157 SCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSDSE- 215
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+F NV+VKNL E ++D++K +F E G + S +MRD +GKSK FGF+NF++P+ AA +
Sbjct: 216 VKFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASA 275
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ALNGK + KE YVG+AQKK ERE L+ KFE+ E K++G+NLYVKNL D I D
Sbjct: 276 VQALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDD 335
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+ L+ FS+FGTITS KVM D G SRG GFV +++ EEA++A+TEMNG+M+ KP+YVA
Sbjct: 336 ETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVA 395
Query: 396 LAQRKEERRARL--QFSQ-MRPPVGPRMPMYPPV-APGLGQQLFY 436
LAQR++ RRA+L Q+ Q + P GPR PM P + PG +FY
Sbjct: 396 LAQRRDVRRAQLEQQYQQRVAMPPGPRGPMAPGMFPPGGAPPMFY 440
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/631 (44%), Positives = 384/631 (60%), Gaps = 53/631 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FG+ILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + LK+IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRM-------PMYPPVAPGLGQQLFYGQGPPI-IP 444
RKEER+A L + + MR GP + + P P + FY P +
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNPVAPVR 429
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA--QQP-IPLMQPRM 501
P P + Q P +P P + P S M+QA Q P +PL R+
Sbjct: 430 PAPQWASHQSRPPQYQPP------APLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQRV 483
Query: 502 LPRG------------RIYR----YPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAF 545
G I R Y C + +V G + + A
Sbjct: 484 ANIGTQTAGARAQVNASIMRAMPHYKYSCGVRNVQPIGSSAHL---------QQVLEPAV 534
Query: 546 SQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
Q AS LA A ++Q+ +LGE +YPL+ ++ A K+TGMLLE+D +E+LH+L
Sbjct: 535 LMQGQEPLTASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHML 594
Query: 606 ESPEALKAKVAEAMEVLR-NVAQQQATGPSP 635
ESPE+L +KV EA+ VL+ + A++ A +P
Sbjct: 595 ESPESLHSKVEEAVAVLQAHQAKESAPKSAP 625
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/600 (46%), Positives = 379/600 (63%), Gaps = 34/600 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SID+KAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F +ERE+ A
Sbjct: 131 ACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREAELGAQALA 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F EFG + S VMRD G S+ FGFVNF+ ++A ++V+
Sbjct: 190 FTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ ++ YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSISD+K
Sbjct: 250 HMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNLDDSISDEK 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ +FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG +V +KPLYVALA
Sbjct: 310 LRTVFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALA 368
Query: 398 QRKEERRARL--QFSQM--------RPPVG----PRMPMYPPVAPGLGQQLFYGQGPPII 443
QRKEER+A L Q+ Q RP +G P P VA Q YG +
Sbjct: 369 QRKEERKAILTNQYMQRLSTVQALGRPVMGSFQQPNSYFLPAVAQPPAQATCYGGSGSVA 428
Query: 444 PPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
P QP + Q P +V+P +RP S ++QA +P + P
Sbjct: 429 PVQPAPRWTAQ------PQR-ASLVRPPGLPRRPRAHVSS---VRQASTQVPYLAPHTKK 478
Query: 504 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASP 563
I G + G L G+P + A P Q AS LA A
Sbjct: 479 VANIGTQTMGAS----RACSTEGPSLSAVLTAHGVP--EPAVHVPGQEPLTASMLAAAPL 532
Query: 564 EQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+Q+ ++GE LY L+ ++ A K+TGMLLE+D +E+L +LESPE+L+AKV EA+ VL+
Sbjct: 533 HEQKQMIGERLYRLIPEVYAALAGKITGMLLEIDNSELLLMLESPESLQAKVEEAVAVLQ 592
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 27/226 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A+ T++YV +L + +++ L DLF + G+++SV+V RD ++ S G+G+VN+ E
Sbjct: 185 AQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRD-NSGHSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R +D R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI ++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSISDEKLRTVFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGCIVGTK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
++V RK+ER K N Y++ LS T + + + G F
Sbjct: 362 PLYVALAQRKEER-----KAILTNQYMQRLS--TVQALGRPVMGSF 400
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 298/680 (43%), Positives = 391/680 (57%), Gaps = 108/680 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 49 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 108
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 109 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 168
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 169 VAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 228
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+ T+++ +++FG+FG ITS + RD GKS+ FGFVN+ D ++A +V
Sbjct: 229 NFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAV 288
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN K F ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D + D+
Sbjct: 289 DDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDE 348
Query: 337 KLKELFSEFGTITSCKVMRDPNGI------------------------------------ 360
KL+ELFS FGTITS KVMRD G
Sbjct: 349 KLRELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTEDEDKTDA 408
Query: 361 ----------SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ R+++L+ S
Sbjct: 409 KKSDKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEAS 468
Query: 411 -QMRPPVG----------PRMPMYPPVAPGLGQQLFY----GQGPPIIPPQPGFGYQQQL 455
Q R + P+ M P V G GQQ F GQ PQPG
Sbjct: 469 IQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFLPGNAGQRGMAFAPQPGM--VMAG 526
Query: 456 VPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQ-----PIPLMQ--PRMLPRGRIY 508
+PG RP + PG Q+ G R GP Q Q PI MQ P +P G
Sbjct: 527 IPGGRPGQY-----PGGFPQQ--GGRGIAGPNQIPQNFGQGIPIGAMQAGPGGIPNGMA- 578
Query: 509 RYPPGCNIPDVPVAG----VPGGMLPG------------PYDIGGMPFRDAAFSQPMQTG 552
YP + AG VP G+ P Q + G
Sbjct: 579 -YPQMAQVQFGRGAGGRGQVPQGIPPNVGGPRGGPGFGQGRGGMPPRPGPGGRGQNVPAG 637
Query: 553 ALAS-----------ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
A A+ AL A P+QQ+ +LGE LYP + + + A K+TGMLLEMD E+
Sbjct: 638 APAAPEGTPGTLTLQALTAAPPQQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAEL 697
Query: 602 LHLLESPEALKAKVAEAMEV 621
L L++ AL+AKV EA+ V
Sbjct: 698 LGLIDDESALRAKVDEALHV 717
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 153/290 (52%), Gaps = 15/290 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 42 PNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 101
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 102 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 157
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 158 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 217
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+YVKN+D ++D++ +ELF +FG ITS + RD +
Sbjct: 218 DRQ----SKFEEM------KANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDS 267
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV + E A A+ ++N K + LYV AQ+K ER L+
Sbjct: 268 GKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELR 317
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 283/627 (45%), Positives = 378/627 (60%), Gaps = 65/627 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKSRREREAEYGAKAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + + L++ F FG S VM D G+SK FGFVNF+ DA ++VE
Sbjct: 191 TNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVED 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQ-----------------FSQMRPPVG---PRMPMYPPVAPGLGQQLFYGQ 438
RKEER+A L F +PP G P +P P P Y
Sbjct: 370 RKEERKAILTNQYMQRLATLRTLPGPLFCSFQPPPGYFVPSIPQPQPRTP-------YYN 422
Query: 439 GPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGR-RSGTGPMQQAQQPIPLM 497
P+ P +P + Q RP P + P R + M+QA +P +
Sbjct: 423 ASPVAPVRPAPRWNGQ---HSRPPSSYHTATPVLRTNAPPRRILNNISTMRQASTQVPRV 479
Query: 498 QP---RM-----------------LPRGRIYRYPPGCNIPDV-PVAGVPGGMLPGPYDIG 536
P RM RG I +Y + ++ P+ +P P P
Sbjct: 480 PPNAQRMANIGTQTVSVRAPSPPTFSRG-ISQYKYSSAVRNIQPLNAMP----PIPMQQV 534
Query: 537 GMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEM 596
P +P+ AS LA A P++Q+ +LGE LYPL+ + A K+TGMLLE+
Sbjct: 535 VEPAVHIHGQEPLT----ASMLAAAPPQEQKQILGERLYPLIHAMHPFLAGKITGMLLEI 590
Query: 597 DQTEVLHLLESPEALKAKVAEAMEVLR 623
D +E+L +LESPE+L +K+ EA+ VL+
Sbjct: 591 DNSELLLMLESPESLHSKIEEAVAVLQ 617
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 291/641 (45%), Positives = 389/641 (60%), Gaps = 80/641 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 73 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 132
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 133 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + + LK++F ++G S VM D GKS+ FGFV+++ +DA ++VE
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEE 251
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 252 MNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 311
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 312 RKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 370
Query: 399 RKEERRARLQFSQMRPPVGPR-MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
RKEER+A L M+ G R MP A + Q QP GY VP
Sbjct: 371 RKEERKAHLTNQYMQRIAGMRAMP-----ANAIINQF-----------QPAGGYFMPAVP 414
Query: 458 GM--RPNYFVPMVQPGQQNQ-RPGGR---RSGTGPMQQAQQPIPLMQPRMLPRGRIYRYP 511
R Y+ P Q Q RP R + G G P L QP PR I
Sbjct: 415 QAQNRTTYYAP----NQLTQMRPNPRWQQQGGRGQGGFQGMPSSLRQPG--PRANIRHLA 468
Query: 512 PGCNIPDVPVAGVPGGMLPGPYDIGGM-------------------PFRDAA-------- 544
P + P GM G +GG P++ A+
Sbjct: 469 PNASNQG------PRGMPTGAQRVGGTGQPMGPRPAMGMTTPRAMPPYKYASTIRNTQPQ 522
Query: 545 FSQPM-------------QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTG 591
QP+ Q AS LA A P++Q+ +LGE L+PL+ + A K+TG
Sbjct: 523 VVQPIALQQAQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITG 582
Query: 592 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLR-NVAQQQAT 631
MLLE+D +E+LH+LES E+L++KV EA+ VL+ + A++ AT
Sbjct: 583 MLLEIDNSELLHMLESHESLRSKVEEAVAVLQAHQAKKDAT 623
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/608 (45%), Positives = 374/608 (61%), Gaps = 32/608 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ A +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRM-------PMYPPVAPGLGQQLFYGQGPPIIPP 445
RKEER+A L + S +R GP + + P P Q Y P + P
Sbjct: 370 RKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQAAYYASSPSVQP 429
Query: 446 QPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRG 505
P + Q V MV+P +RP + ++QA +P P
Sbjct: 430 APRWTAQPPRVSS------ASMVRPPAMLRRPPAQ---VNSVRQASTQVPPPGPHTQRVA 480
Query: 506 RIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMP--FRDAAFSQPMQTGALASALANASP 563
I G + V + G +L Y R++A P Q AS LA A
Sbjct: 481 NIGTQTTGAS--GVGYSTPTGPVLTHKYSSAAHNPGVRESAVCIPGQEPLTASMLAAAPL 538
Query: 564 EQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+Q+ ++GE LYPL+ A K+TGMLLE+D +E+L +LESPE+L AKV E E L
Sbjct: 539 HEQKQMIGERLYPLIYDTHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVVE--EALA 596
Query: 624 NVAQQQAT 631
+ QAT
Sbjct: 597 VLQAHQAT 604
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DIGHSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ ++N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVMDMNGKEVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 285/631 (45%), Positives = 381/631 (60%), Gaps = 57/631 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY F+ G ++S+RVCRD+ TRRSLGY YVN+ +A ALD
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A AI+ +NGMLLND++VFVG F ++ERE + +F
Sbjct: 132 CDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAMKF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E T++ LK++F FG S VM+D G+S+ FGFVN+ +DA ++V
Sbjct: 191 TNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG+AQK+ ER+ ELK KF+Q ++ +++G+NLYVKNLDDSI D++L
Sbjct: 251 MNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ +GTITS KVM D S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGTITSAKVMTD-GSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPG 458
R+EER+A L M+ R M P+ Q +Y P PP F Y V
Sbjct: 370 RREERKAILTNKYMQRLATLRT-MASPLIDSYHQSGYYVTLPQ--PPMRSF-YNHSAVSS 425
Query: 459 MRPNYFVPMVQPGQQNQRPGG-----------RRSGTGPMQQAQQPIPLMQPRM------ 501
+RP VP + Q RP G R G+ P+ +Q PR+
Sbjct: 426 VRP---VP--RWTGQPPRPQGPYTTQLVSGSVPRRGSTPIATVRQA-STQAPRIVTSTQK 479
Query: 502 -----------------LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAA 544
+ R Y+Y P V VP M+ + P
Sbjct: 480 TNDIGTQTVGGRTDIASVARSSQYKYASAVRNPQ-QVVTVPAPMVHNDLQLMEPPVHIQG 538
Query: 545 FSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
+P+ AS LA A P Q+ LLGE LYPL+ L + A K+TGMLLE+D +E+LH+
Sbjct: 539 -PEPL----TASVLAAAPPMDQKQLLGERLYPLIHALHPNLAGKITGMLLEIDNSELLHM 593
Query: 605 LESPEALKAKVAEAMEVLRNVAQQQATGPSP 635
LES E+L AKV EA+ VL+ QA SP
Sbjct: 594 LESQESLHAKVDEAIAVLQ---AHQAKEHSP 621
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 23/208 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + D +L ++F+ G+ +SVRV +D RS G+G+VNY +A +A++
Sbjct: 191 TNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKD-EKGRSRGFGFVNYAHHEDAQKAVN 249
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N +NGK + R + I++ N+++KNLD SID++
Sbjct: 250 EMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDER 309
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L F+ +G I S KV TD QS+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 310 LRKEFAPYGTITSAKVMTDG-SQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTT 231
R++ER K N Y++ L+ T
Sbjct: 369 QRREER-----KAILTNKYMQRLATLRT 391
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD S++D +L F G + S +V D S +S G+G+V +++ EA
Sbjct: 289 QRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGS--QSKGFGFVCFSSPEEA 346
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
T+A+ E+N + KP+ + + R RK+ N +++ L
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRREE-RKAILTNKYMQRL 386
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 288/654 (44%), Positives = 386/654 (59%), Gaps = 84/654 (12%)
Query: 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA 90
V A SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+
Sbjct: 307 VSGATAIPMASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQ 366
Query: 91 AHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
+A R L+ +N + GKP+RIM+S RDP++RKSG GNIFIKNL+KSIDNKAL+ TFS
Sbjct: 367 LADAERVLETMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSA 426
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FGNILSCKV +D G S+GYGFV F+N+++A AI+K+NG+ LN+ +V+VG F ++ERE
Sbjct: 427 FGNILSCKVISDENG-SKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERE 485
Query: 211 ST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
A F NVY+KN E D L ++FG+FG S VM D GKSK FGFV+++
Sbjct: 486 LELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEK 545
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA R+V+ +NGK+F+ K YVG+AQKK ER+ ELK FEQ +E + +++G+NLYVKN
Sbjct: 546 HEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKN 605
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LDDSI D++L++ FS FGTITS KVM + G SRG GFV FS EEA+KA++EMNGK+V
Sbjct: 606 LDDSIDDERLRKAFSPFGTITSAKVMME-GGHSRGFGFVCFSAPEEAAKAVSEMNGKLVA 664
Query: 389 SKPLYVALAQRKEERRARLQ-----------------FSQMRPPVGPRMPMYPPVAPGLG 431
+KPLYVALAQRK +R+ L FS +PP R M P P
Sbjct: 665 TKPLYVALAQRKRDRQVHLTNQYMQRMASFQAMSNPVFSPYQPPPTSRYFMTPLPQPQSR 724
Query: 432 QQLF-YGQGPPIIPPQPGFGYQQQLVPGMRPNYF--VPMVQPGQQNQRPGGRRSGT---- 484
+ YGQ P P P + VPG R + F VP V RP G
Sbjct: 725 PAYYPYGQIPQFRPSPPHWA-----VPGGRFHPFQTVPGV------MRPRGPAPAPAPAP 773
Query: 485 -GPMQQAQQPI-PLMQPRML--PRGRI-----------------YRY------PPGCNIP 517
P+ + P+ LM + + P ++ Y+Y P N+P
Sbjct: 774 FNPVTSSSVPVSALMNTQHIVNPSSQMLGPPNPPFMPPMRSVQQYKYAAGVRNPKHLNMP 833
Query: 518 DVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPL 577
P G+ F +P+ AS LA P++Q+ +LGE L+PL
Sbjct: 834 LPVTTPQPAGLF--------------EFQEPL----TASMLAATPPQEQKQILGERLFPL 875
Query: 578 VDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
+ L A K+TGMLLE+D +E+LH+LESPE+L+AKV EA+ VL ++A
Sbjct: 876 IQALNPALAGKITGMLLEIDNSELLHMLESPESLQAKVDEAVAVLEAHQAKEAA 929
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 282/613 (46%), Positives = 378/613 (61%), Gaps = 58/613 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY F+ G ++S+RVCRD+ TRRSLGY Y+N+ +A ALD
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ EE+A AI+ +NGMLLND++VFVG F ++ERE + +F
Sbjct: 132 CDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSKALKF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+Y+KN E ++ LK++F FG S VM+D G+S+ FGFVNF +DA ++V+
Sbjct: 191 TNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG+AQK+ ER+ ELK KFE ++ +++G+NLYVKNLDDSI D++L
Sbjct: 251 MNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSIDDERL 310
Query: 339 KELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
++ F+ +GTITS KVM D P SRG GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 311 RKEFAPYGTITSAKVMTDGPQ--SRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
QR+EER+A L M+ R M P+ Q +Y + PQP Y V
Sbjct: 369 QRREERKAILTNKYMQRLATLRT-MTSPIIDSYQQAGYY-----MTVPQPRSFYSPNAVS 422
Query: 458 GMR--PNYFVPMVQPGQQNQRPG------GRRSGTGPM---QQAQQPIPLMQPRMLPRGR 506
MR P + GQ ++ G G R G+ P+ +QA P +
Sbjct: 423 TMRALPRW------TGQPHRLQGPYTIVSGPRRGSTPIASVRQASTQAPNVISSAQKTNN 476
Query: 507 IYRYPPG--CNIPDVPVAG-------------VPGGML-PGPYDIGGMPFRDAAFSQPMQ 550
I G +P VP +G VPG +L P Y G P
Sbjct: 477 IGTQTVGGRAELPGVPRSGQYKYSSAVRNAQQVPGPVLEPSVYIQGQEPL---------- 526
Query: 551 TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEA 610
AS LA A Q+ LLGE LYPL+ L + A K+TGMLLE+D +E+LH+LE+PE+
Sbjct: 527 ---TASMLAAAPLMDQKQLLGERLYPLISTLHPNLAGKITGMLLEIDNSELLHMLETPES 583
Query: 611 LKAKVAEAMEVLR 623
L +KV EA+ VL+
Sbjct: 584 LHSKVDEAIAVLQ 596
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 112/208 (53%), Gaps = 23/208 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ND +L ++F G+ +SVRV +D RS G+G+VN+ +A +A+D
Sbjct: 191 TNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHEDAQKAVD 249
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N LNGK I R + I++ N+++KNLD SID++
Sbjct: 250 EMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSIDDER 309
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L F+ +G I S KV TD QSRG+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 310 LRKEFAPYGTITSAKVMTDG-PQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTT 231
R++ER++ N Y++ L+ T
Sbjct: 369 QRREERKAI-----LTNKYMQRLATLRT 391
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD S++D +L F G + S +V D R G+G+V +++ EA
Sbjct: 289 QRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGPQSR--GFGFVCFSSPEEA 346
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
T+A+ E+N + KP+ + + R RK+ N +++ L
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRREE-RKAILTNKYMQRL 386
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/570 (47%), Positives = 358/570 (62%), Gaps = 72/570 (12%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD +NF + GKP+RIM+
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F
Sbjct: 62 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 120
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTED 233
+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++
Sbjct: 121 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 180
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+
Sbjct: 181 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 240
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L++ FS FGTITS KV
Sbjct: 241 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 300
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR 413
M + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L M+
Sbjct: 301 MME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 359
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQ 473
R P + P Y PP YF+ + P Q
Sbjct: 360 RMASVRAVPNPVINP-------YQPAPP-------------------SGYFIAAI-PQTQ 392
Query: 474 NQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPY 533
N R+ P Q Q P PR +G P V V G
Sbjct: 393 N------RAAYYPPSQIAQLRP--SPRWTAQG-------ARPHPAVHVQG---------- 427
Query: 534 DIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGML 593
Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGML
Sbjct: 428 ----------------QEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 471
Query: 594 LEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
LE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 472 LEIDNSELLHMLESPESLRSKVDEAVAVLQ 501
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 75 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 132
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 133 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 192
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 193 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 252
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 253 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 311
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 312 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 361
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 162 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 218
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 219 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 278
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 279 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 337
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 338 LYVALAQRKEERQA-----HLTNQYMQRMA 362
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 284/619 (45%), Positives = 388/619 (62%), Gaps = 37/619 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + +D L++IF FG S VM D +G+SK FGFVNF+ ++A ++V
Sbjct: 191 TNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + + MR GP + + PP+ + FYG P++P
Sbjct: 370 RKEERKAILTNQYMQRLATMRALPGPLLGSFQTPSGYFLPPMPQPQTRAAFYGPS-PVVP 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGR-RSGTGPMQQAQQPIPLMQPRMLP 503
+P + Q P P Y P P + P R S +QA +P + P+
Sbjct: 429 VRPATRWSAQ--PSRPPLY--PEATPILRAAVPPRRLLSNISTTRQASTQVPRVPPQAQR 484
Query: 504 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD--------IGGM-PFRDAAFSQPMQTGAL 554
I +P + +P G Y +G M P + A Q
Sbjct: 485 LVNIGTQTVSTRLPS--SSALPRGTQQYKYSSSARNMQPMGHMPPVGEPAVHVQGQEPLT 542
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ ++GE LYPL+ L A K+TGMLLE+D +E+L LLESP++L++K
Sbjct: 543 ASLLAAAPPQEQKQMIGERLYPLIHVLHPSLAGKITGMLLEIDNSELLLLLESPDSLRSK 602
Query: 615 VAEAMEVLRNVAQQQATGP 633
+ EA+ VL+ A Q P
Sbjct: 603 IEEAVTVLQ--AHQSTETP 619
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGG--RSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 281/607 (46%), Positives = 380/607 (62%), Gaps = 45/607 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A++AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG++ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR GP + + P V Q +YG GPP I
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGGPVLGSFQQPASYFLPAVPQPPAQAQYYGSGPP-IQ 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP---RM 501
P P + Q RP+ P + ++RP + G +Q +P + P R+
Sbjct: 429 PAPRWTAQPP-----RPSC---DRLPARVSRRP---LAPVGSSRQLSTHMPHLVPHTQRV 477
Query: 502 LPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMP---FRDAAFSQPMQTGALAS 556
G P GC+ P P +L Y ++ A Q AS
Sbjct: 478 ANIGTQTIGPSVTGCSTPSRP-------LLTHKYSTPAHCTDRVQEPAVCVLGQEPLTAS 530
Query: 557 ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 616
LA A +Q+ ++GE L+PLV + A K+TGMLLE+D +E+L +LESPE+L AKV
Sbjct: 531 TLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPESLNAKVE 590
Query: 617 EAMEVLR 623
EA+ VL+
Sbjct: 591 EALAVLQ 597
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 117/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ +L DLF+Q G+++SV+V RD S S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSG-HSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVVNMNGREVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 289/647 (44%), Positives = 388/647 (59%), Gaps = 64/647 (9%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
N+GG G + SLYVGDL V ++ LY F+ G +VS+RVCRD+ TRRSLGY Y+
Sbjct: 2 NSGGPG----YPLASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYI 57
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
N+ +A ALD +N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D SIDNKAL+D
Sbjct: 58 NFQQPADAECALDTMNYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNIDDSIDNKALYD 117
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
TFS FGNILSCKV D G S+GYGFV F+ +E+A AI+ +NGMLLND++VFVG F +
Sbjct: 118 TFSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 207 QEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
+ERE +F N+Y+KN + T++ LK+ F FG S VMRD G+S+ FGFV
Sbjct: 177 KEREVEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFV 236
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
N+ +DA ++V+ +NGK+ + K YVG+AQK+ ER+ ELK KF+Q ++ +++G+NL
Sbjct: 237 NYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNL 296
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
YVKNLDDSI D++L++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG
Sbjct: 297 YVKNLDDSIDDERLRKEFSPYGTITSAKVMTEA-GQSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 385 KMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 444
++V +KPLYVALAQR+EER+A L M+ R M P+ Q +Y +
Sbjct: 356 RIVATKPLYVALAQRREERKAILTNKYMQRMATLRT-MPSPIIDSYHQSGYY-----MTV 409
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRP---------GGR--RSGTGPMQQAQQP 493
PQ Y V +RP +P PGQ QRP GG R G+ + +Q
Sbjct: 410 PQVRSFYNHNAVSNVRP---IPR-WPGQP-QRPQDPYSSHIVGGSFARRGSTTITTVKQA 464
Query: 494 IPLMQPRMLPRGRIYRYPPGCNIPDVPVAG---VPGGMLPGPYDIGGM---PFRDAAFSQ 547
PR++ + NI V G V G + G Y P
Sbjct: 465 -STQAPRIIASTQ-----KTNNIGTQTVGGRADVAGVLRSGQYKYSSAVRNPLHVVTVPA 518
Query: 548 PMQTGAL-------------------ASALANASPEQQRTLLGENLYPLVDQLEHDNAAK 588
PM + AS LA A P Q+ LLG+ LYPL+ + + A K
Sbjct: 519 PMTRSQVVPVSMVEPPVHILGPEPLTASMLAAAPPMDQKQLLGDRLYPLILAQQPNLAGK 578
Query: 589 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSP 635
+TGMLLE+D +E+LH+LESPE+LK+KV EA+ VL+ QA SP
Sbjct: 579 ITGMLLEIDNSELLHMLESPESLKSKVDEAIAVLQ---AHQAKDCSP 622
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 275/622 (44%), Positives = 377/622 (60%), Gaps = 60/622 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSL Y Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPMYPPVA-------PGLGQQLFYGQGPPI-IP 444
RKEER+A L + + MR GP + + A P + FY P +
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLSAMPQPPNRTFYSPNPVAPVR 429
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL-------- 496
P P + Q P +P P+++ Q P S M+QA +P
Sbjct: 430 PAPQWASHQSRPPQYQPP--TPLMRAVQ----PRRMSSNISTMKQASTQVPRVAQHSQRV 483
Query: 497 -------------MQPRMLPRGRIYRYPPGC-NI-PDVPVAGVPGGMLPGPYDIGGMPFR 541
+ P M+ Y+Y G N+ P V + M P G P
Sbjct: 484 ANIGTQTAGARAQVNPSMMRTMPHYKYSCGVRNVQPIVSSTHLQQVMEPAVLMQGQEPL- 542
Query: 542 DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
AS LA A ++Q+ +LGE +YP++ ++ A K+TGMLLE+D +E+
Sbjct: 543 ------------TASLLAGAPLQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSEL 590
Query: 602 LHLLESPEALKAKVAEAMEVLR 623
LH+LESPE+L +KV EA+ VL+
Sbjct: 591 LHMLESPESLHSKVEEAVAVLQ 612
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/644 (43%), Positives = 382/644 (59%), Gaps = 76/644 (11%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRRS Y YVN+ +A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++R+SG GNIF+KNLDKSI+NK L+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NG LLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI--------- 442
ALAQRKEER+A L M+ R P+ P P F P
Sbjct: 366 ALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYPP 425
Query: 443 -----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQ-QAQQPIPL 496
+ P P + Q G RP+ F QN +PGG R + +P
Sbjct: 426 SQIAQLRPSPCWTAQ-----GARPHPF--------QN-KPGGIRPAAPRLPFSTMRPTSS 471
Query: 497 MQPRMLPRGRI-----------------------------YRYPPGCNIPDVPVAGVPGG 527
PR++ R+ Y+Y G P + P
Sbjct: 472 QVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHLNAQP-- 529
Query: 528 MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
+ + +A Q AS LA+A P++Q+ +LGE L+P + + A
Sbjct: 530 ---------QVTMQQSAVHVQGQETLTASMLASAPPQEQKQMLGERLFPPIQAMHPTLAG 580
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+ ++AT
Sbjct: 581 KITGMLLEIDNSELLHMLESPESLHSKVDEAVAVLQAHQAKEAT 624
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 285/712 (40%), Positives = 398/712 (55%), Gaps = 139/712 (19%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 62 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKA 121
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 122 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 181
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 182 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 241
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F N+YVKN++ T+D+ + +F FG +TS+++ RD +GKS+ FGFVNF + AA++
Sbjct: 242 ANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKA 301
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLY+KNLDD + D
Sbjct: 302 VDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKASKYQGVNLYIKNLDDEVDD 361
Query: 336 DKLKELFSEFGTITSCKVMRD--------------------------------------- 356
+KL++LF++FG ITS KVMRD
Sbjct: 362 EKLRQLFADFGPITSAKVMRDNATESGNEDEGSSDDKENEPKKEEGEEKAEEAKSEDKED 421
Query: 357 ------------PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
P+G S+G GFV FS ++A+KA+ EMN +MV KPLYVALAQRK+ R+
Sbjct: 422 ADKKADKKSDKKPHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRK 481
Query: 405 ARLQFS-----QMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQ 452
++L+ S Q+R P+ M PPV GQQ + QG + PQPG
Sbjct: 482 SQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAAGQQPVFPQGGRGMAFPQPGMA-- 539
Query: 453 QQLVPGMRPNYFVPMVQPGQQNQRPGG--RRSGTGPMQQAQQPIPLMQPRMLPRGRIYRY 510
+P VQ G+ Q PGG ++ G G + Q P+ + P P G Y
Sbjct: 540 ------------MPAVQGGRPGQFPGGYPQQGGRGGLPQQMPPVYGI-PGQFPPGAPYPQ 586
Query: 511 P--------------------------------------------------PGCNIPDVP 520
P G N P
Sbjct: 587 PGNPQFLAAIQQVQQATMGGGRGGPQGGRGPVPQGMPMPGPGMPGFPPNARQGGNQPGAG 646
Query: 521 VAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALAS---ALANASPEQQRTLLGENLYPL 577
P P+ GG A +Q + +G+L A A ++P QQ+ +LGE ++P
Sbjct: 647 RGANPNAPRNAPFPQGGR----GAPAQDLNSGSLIQQQLAAAGSNPGQQKQILGEVIFPK 702
Query: 578 VDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
+ ++ + A K+TGMLLEMD E+++L+E ALKAKV EA+ V + Q
Sbjct: 703 IQAIQPELAGKITGMLLEMDNAELVNLIEDESALKAKVDEALGVYEEYIKAQ 754
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 278/642 (43%), Positives = 389/642 (60%), Gaps = 62/642 (9%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY + RAL++L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ + + RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCKVAT
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT 165
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER+S D K +F
Sbjct: 166 DEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFT 225
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL + T+D+ +++F ++G +TS V D +G SK FGFVN++ ++A +V+AL
Sbjct: 226 NLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDAL 285
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ K+ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D + D+KL+
Sbjct: 286 HDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLR 345
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F FGTITSCKVMRD S+G GFV FS+ +EA+KA+ EMN KM+ SKPLYV+LAQR
Sbjct: 346 AEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQR 405
Query: 400 KEERRARLQFSQMRPPVGPRM---------------PMYPPVAPG----LGQQLF-YGQG 439
+E RR +L+ SQ+ RM PMY P PG G+ + YGQ
Sbjct: 406 REVRRQQLE-SQIAQRNQIRMQQAAAAGIPGGYINGPMYYPPGPGSFPPQGRNMMGYGQ- 463
Query: 440 PPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQ-NQRPGGRRSGT--GPMQQAQQPIPL 496
P ++PP+P + VPG P P QP Q PG R G P+ + P
Sbjct: 464 PGMLPPRPRYPAGNGQVPGGMP--IPPYGQPPQSYGGMPGYPRGGAPRPPVARGPGSSPT 521
Query: 497 MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML------------------------PGP 532
+PR PP N G P G + P
Sbjct: 522 NPNAPIPRANA---PPSVN-GAAARGGAPQGSVPPNRPPPAGAPAPGNRPPQGYKLNPQT 577
Query: 533 YDIGGMPFRDAAFSQPMQTGA-----LASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
+ G P + +Q T + A ALANASP +Q+ +LGE +Y + + + A
Sbjct: 578 RNAGAPPVGQTSPAQAPATQSEVPTLTAGALANASPMEQKQMLGEVIYMKIAPAQPELAG 637
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
K+TGMLLEMD E+LHLLESP+++ KV EA+ VL + + +
Sbjct: 638 KITGMLLEMDNAELLHLLESPDSMAGKVNEALAVLHDFTKDE 679
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/603 (45%), Positives = 376/603 (62%), Gaps = 35/603 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE+ A T F
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELGARATAF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + YVG+AQK+ ER+ ELK +FE + ++ ++ +G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG+++ +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR GP + + P +A Q YG P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGGPFLGSFQQPTSYFLPAMAQPPAQAEHYGSSPS-RQ 428
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
P P + Q RP+ MV+P ++RP + ++Q +P + P
Sbjct: 429 PAPRWTTQPP-----RPSS-ASMVRPPAMSRRPLAQ---VCSVRQTSTQVPYLVPHTQRV 479
Query: 505 GRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMP----FRDAAFSQPMQTGALASALAN 560
I PG P PG LP P ++ A AS LA
Sbjct: 480 ANIGTQTPG---PGGAGCSTPGRSLPTHRYFLATPNTHEVQEPAVRILGPEPLTASMLAA 536
Query: 561 ASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 620
A QQ+ ++GE LYPL+ ++ A K+TGMLLE+D +E+L +LESPE+L AKV EA+
Sbjct: 537 APLHQQKQMIGERLYPLIYEVHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALA 596
Query: 621 VLR 623
VL+
Sbjct: 597 VLQ 599
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 117/211 (55%), Gaps = 25/211 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L V++ L DLF+Q G+++SV+V RD S S G+G+VN+ E
Sbjct: 185 ARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSG-HSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+ ++N ++G+ + R ++ +D R G N+++KNLD
Sbjct: 244 AQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIIGTK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ LS
Sbjct: 362 PLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 290/626 (46%), Positives = 377/626 (60%), Gaps = 66/626 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G S+GYGFV F+ EE+A +ID++NGMLLN K++F N
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFT-------------------N 172
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A ++V LN
Sbjct: 173 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 232
Query: 281 GKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
GK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDSI D++L+
Sbjct: 233 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLR 292
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALAQR
Sbjct: 293 KEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQR 351
Query: 400 KEERRARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQQQLVP 457
KE+R+A L M+ RM M PG F P IP PQ +G Q
Sbjct: 352 KEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFV----PTIPQPQRFYGPAQMAQI 407
Query: 458 GMRPNYFVPMVQPGQQNQ-RPGGR--RSGTGPMQ---QAQQPIPLMQPRMLPRGRIYRYP 511
P + P Q NQ RP + SG MQ +A P QP + R + P
Sbjct: 408 RTTPRW------PAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGAM-RSTLSARP 460
Query: 512 -------PGCNIPDV----PVAGVPGGMLPGPYDIGG--------------MPFRDAAFS 546
G N+ P GV P Y P + A
Sbjct: 461 ITGQQTVGGANMQSRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAMAIPTPTPVQQAVHI 520
Query: 547 QPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
Q Q AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE
Sbjct: 521 QG-QEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLE 579
Query: 607 SPEALKAKVAEAMEVLRNVAQQQATG 632
E+LKAKV EA+ VL+ +QA
Sbjct: 580 HNESLKAKVEEAVAVLQAHQAKQAVA 605
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/601 (46%), Positives = 373/601 (62%), Gaps = 47/601 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 438
RKEER+A L + S MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 439 GPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
G P+ P QP + Q RP+ + P + ++QA +P
Sbjct: 424 G-PVTPTQPAPRWTSQ---PPRPS----CASMVRPPVVPRRPPAHISSVRQASTQVPRTV 475
Query: 499 P---RMLPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA 553
P R+ G P GC P P+ +P + ++ A P Q
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTPGRPL--LPCKCSSAAHST--YRVQEPAVHIPGQEPL 531
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L A
Sbjct: 532 TASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHA 591
Query: 614 K 614
K
Sbjct: 592 K 592
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/644 (42%), Positives = 382/644 (59%), Gaps = 76/644 (11%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRRS Y YVN+ +A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++R+SG GNIF+KNLDKSI+NK L+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NG LLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI--------- 442
ALAQRKEER+A L M+ R P+ P P F P
Sbjct: 366 ALAQRKEERQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYPP 425
Query: 443 -----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQ-QAQQPIPL 496
+ P P + Q G RP+ F QN +PGG R + +P
Sbjct: 426 SQIAQLRPSPCWTAQ-----GARPHPF--------QN-KPGGIRPAAPRLPFSTMRPTSS 471
Query: 497 MQPRMLPRGRI-----------------------------YRYPPGCNIPDVPVAGVPGG 527
PR++ R+ Y+Y G P + P
Sbjct: 472 QVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHLNAQP-- 529
Query: 528 MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
+ + +A Q AS LA+A P++Q+ +LGE L+P + + A
Sbjct: 530 ---------QVTMQQSAVHVQGQETLTASMLASAPPQEQKQMLGERLFPPIQAMHPTLAG 580
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL+ ++AT
Sbjct: 581 KITGMLLEIDNSELLHMLESPQSLRSKVDEAVAVLQAHQAKEAT 624
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 290/634 (45%), Positives = 394/634 (62%), Gaps = 43/634 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVG+LD +V ++ LY++F+ +G V S+RVCRD TRRSLGY YVNY A +A RAL
Sbjct: 83 NTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERAL 142
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + K RIM+S RDP++RK+G GNIFIKNLD++IDNKALHDTF+ FG+ILSCK
Sbjct: 143 EQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCK 202
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
VATD G S+GYGFV + ESA++AI +NGM LNDK VFVG + +++R++ D+ R
Sbjct: 203 VATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRS 262
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KNL TT ++L ++FG+FG ITS AV D GK + FGFVN+++ + A+++V
Sbjct: 263 QFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAV 322
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+AL+ K + YV +AQK+ ER+ ELK EQ ET K++G+NLYVKNLDD D+
Sbjct: 323 DALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDE 382
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F+ FGTITSCKVM+D G S+G GFV FS+ +EA+KA+ EMNGKM+ SKPLYV+L
Sbjct: 383 KLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSL 442
Query: 397 AQRKEERRARL-----QFSQMRPP--VGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF 449
AQRKE R+ +L Q SQMR +P P AP +++G G PP G
Sbjct: 443 AQRKEVRKQQLEAQMSQRSQMRSQQIAAAGIPGAPYGAP--PNPMYFG-GAAAYPPHGGR 499
Query: 450 G--YQQQLVP-GM--RPNY-----FVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ- 498
G Y +P GM RP Y PM PG P + P+ P+ M+
Sbjct: 500 GMMYPPNGMPAGMPPRPRYAPPGQMAPMGMPGGAPYPPHPQDYPGYPVGGPVPPVGGMRG 559
Query: 499 ----PRML--PRGRIYRYPPGCNIP------DVPVAGVPGGMLPGP------YDIGGMPF 540
P L P +R G IP P PG M P Y +
Sbjct: 560 IPGPPAHLGGPNPPNFRGGNGAPIPPMNGRGSAPSTNGPGSMRGAPPQSRDGYAPSSLSG 619
Query: 541 RDAAF--SQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
R + S G +ALA ASP +Q+ +LGE LYP + + + + A K+TGM+LE++
Sbjct: 620 RAVSHRVSDIAPVGLSPAALAKASPAEQKQMLGEALYPQIAEKQPEKAGKITGMILEIEN 679
Query: 599 TEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
E++HLLE+ AL AKV EA++VL ++ A G
Sbjct: 680 AELIHLLENRPALDAKVQEAVQVLDEYERKDAKG 713
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/605 (45%), Positives = 376/605 (62%), Gaps = 59/605 (9%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LFN +G V S+RVCRD TRRSLGY YVN++ + +A
Sbjct: 64 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 123
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LDELN+T + G+P RIM+S RDP++RK G GN+FIKNLD +IDNKALHDTFS FG ILSC
Sbjct: 124 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 183
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D LG ++GYGFV FD+ ESA +AI+ +NGMLLNDK+V+VG + ++ER+S + K
Sbjct: 184 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALK 243
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KNL TE + +FG+FG ITS ++++D + K + FGFVN+ + + A ++
Sbjct: 244 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 303
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K++ K+ YVG+AQKK+ERE EL+ +EQ E +K++G+NL++KNL D + D
Sbjct: 304 VDELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDD 363
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++LK FS FGTITS K+M D G S+G GFV ++T EEA+KA+TEMN +M+ KPLYVA
Sbjct: 364 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 423
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
LAQRKE RR++L+ +Q++ R+ A G+ + GP I P GY
Sbjct: 424 LAQRKEVRRSQLE-AQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPG---GYP--- 476
Query: 456 VPGMRPNYFVPMVQPGQQNQ----------------RPGGRRSGTGPMQQAQQPIPLM-Q 498
+P +PMV PG RPG P A+ P+P +
Sbjct: 477 IPAAVNGRGMPMV-PGHNGPMPMYPGMPPLSSLLEVRPG------YPGMNARGPVPAQGR 529
Query: 499 PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASAL 558
P M+P VP AG P P + GMP R F+ A+ L
Sbjct: 530 PMMMP-------------GSVPSAG-PAEAEAVP-AVPGMPER---FT--------AADL 563
Query: 559 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
A E ++ +LGE LYP V E + K+TGMLLEM +E+L LLE AL +V EA
Sbjct: 564 AAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEA 623
Query: 619 MEVLR 623
+ VL+
Sbjct: 624 IGVLQ 628
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 286/640 (44%), Positives = 390/640 (60%), Gaps = 55/640 (8%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVG+LD +V ++ LY++F+ +G V S+RVCRD TRRSLGY YVNY A +A RAL
Sbjct: 172 NTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERAL 231
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + K RIM+S RDP++RK+G GNIFIKNLD++IDNKALHDTF+ FG+ILSCK
Sbjct: 232 EQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCK 291
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
VATD G S+GYGFV + ESA++AI +NGM LNDK VFVG + +++R++ D+ R
Sbjct: 292 VATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRS 351
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KNL TT ++L ++FG+FG ITS AV D GK + FGFVN+++ + A+++V
Sbjct: 352 QFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAV 411
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+AL+ K + YV +AQK+ ER+ ELK EQ ET K++G+NLYVKNLDD D+
Sbjct: 412 DALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDE 471
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F+ FGTITSCKVM+D G S+G GFV FS+ +EA+KA+ EMNGKM+ SKPLYV+L
Sbjct: 472 KLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSL 531
Query: 397 AQRKEERRARL-----QFSQMR------------PPVGPRMPMY----PPVAPGLGQQLF 435
AQRKE R+ +L Q SQMR P P PMY P G+ +
Sbjct: 532 AQRKEVRKQQLEAQMSQRSQMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYPPHGGRGMM 591
Query: 436 YGQG--PPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQP 493
Y P +PP+P + P PM PG P + P+ P
Sbjct: 592 YPPNGMPAGMPPRPRYA---------PPGQMAPMGMPGGAPYPPHPQDYPGYPVGGPVPP 642
Query: 494 IPLMQ-----PRML--PRGRIYRYPPGCNIP------DVPVAGVPGGMLPGP------YD 534
+ M+ P L P +R G IP P PG M P Y
Sbjct: 643 VGGMRGIPGPPAHLGGPNPPNFRGGNGAPIPPMNGRGSAPSTNGPGSMRGAPPQSRDGYA 702
Query: 535 IGGMPFRDAAF--SQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGM 592
+ R + S G +ALA ASP +Q+ +LGE LYP + + + + A K+TGM
Sbjct: 703 PSSLSGRAVSHRVSDIAPVGLSPAALAKASPAEQKQMLGEALYPQIAEKQPEKAGKITGM 762
Query: 593 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
+LE++ E++HLLE+ AL AKV EA++VL ++ A G
Sbjct: 763 ILEIENAELIHLLENRPALDAKVQEAVQVLDEYERKDAKG 802
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 286/642 (44%), Positives = 379/642 (59%), Gaps = 80/642 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++E+E F N
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFTN 182
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+ALN
Sbjct: 183 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 242
Query: 281 GKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
GK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+L+
Sbjct: 243 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 302
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
FS +G ITS KVM D G S+G GFV F+ EA+ A+TE+NG++V SKPLYVALAQR
Sbjct: 303 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQR 362
Query: 400 KEERRARLQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
KEER+A L MR G RM +Y P A G P +P F + Q+
Sbjct: 363 KEERKADLASQYMRHMTGMRMQQLGQIYQPNAAS-------GFFVPTLPSNQRF-FGSQV 414
Query: 456 VPGMRPN-YFVPMVQP-------------------------------------------- 470
MR +VP V+P
Sbjct: 415 ATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQG 474
Query: 471 ------GQQNQRPGGRRSGTGPMQQAQQP---IPLMQPRMLPRGRIYRYPPGCNIPDVPV 521
N R G R+ TG QQ P IP Q + R Y N+ + PV
Sbjct: 475 THAAAAAANNMRNTGARAITG--QQTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPV 532
Query: 522 AGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQL 581
+ P P + G S+ + LA+A P++Q+ +LGE LYP+++ +
Sbjct: 533 PQLHQTQ-PIPQQLQGKN------SEKLIASLLANA----KPQEQKQILGERLYPMIEHM 581
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ A K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+
Sbjct: 582 HANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 623
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 293/661 (44%), Positives = 392/661 (59%), Gaps = 86/661 (13%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN----------- 89
SLYVG+L + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+
Sbjct: 12 SLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVVGDG 71
Query: 90 -----------AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKS 138
+ A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+
Sbjct: 72 GSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKN 131
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
IDNKA++DTFS FGNILSCKV D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V
Sbjct: 132 IDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 191
Query: 199 FVGPFL-RKQERESTADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
+VG F+ RK+ ++ +K + F NVYVKN E T+D LK++F ++G ITS VM DG
Sbjct: 192 YVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDG 251
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
KS+ FGFV F+DP+ A ++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E
Sbjct: 252 KSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIER 311
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
++++G+NLYVKNLDD+I D++L++ F+ FGTITS KVM + G S+G GFV FS EEA
Sbjct: 312 LNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEA 370
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPV--APGLGQQ 433
+KA+TEMNG++V SKPLYVALAQRKE+R+A L M+ RM + PG
Sbjct: 371 TKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANMRMQQMGQIFHQPGNAGS 430
Query: 434 LFYGQGPPIIP-PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQ-RPGGR--RSGTGPMQQ 489
F P +P PQ +G Q P + P Q NQ RP + SG MQ
Sbjct: 431 YFV----PTLPQPQRFYGPAQMAQIRATPRW------PAQPNQVRPNAQTGNSGFASMQA 480
Query: 490 ---------------------AQQPIP-------LMQPRMLP---------RGRIYRYPP 512
+ +PI MQ R + + R Y
Sbjct: 481 APFRAAPRAPAAQAGALRNNMSARPITGLQAVSNNMQSRSMAGPAVGVSPGQSRPSNYKY 540
Query: 513 GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGE 572
N+ + P A + LP P G + A Q Q AS LA A P++Q+ +LGE
Sbjct: 541 TANMRNPPQAAMA---LPTP---SGPSMQQAVHIQG-QEPLTASMLAAAPPQEQKQMLGE 593
Query: 573 NLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
L+PL+ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL+ +QA
Sbjct: 594 RLFPLIHDMNPQLTGKITGMLLEIDNSELLHMLEHKESLKAKVDEAVAVLQAHQAKQAVA 653
Query: 633 P 633
P
Sbjct: 654 P 654
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 289/625 (46%), Positives = 388/625 (62%), Gaps = 40/625 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S S+YVG+L+ SV + QL DLF+Q VVSVR+C D T RSLGY YVN+++ +A AL
Sbjct: 30 SVSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVAL 89
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ NFT +NGK IR+M+S RDPT+R+SGA N+FIKNL+ +I K+LH FS FG ILSCK
Sbjct: 90 EYFNFTVVNGKSIRVMFSNRDPTLRRSGAANLFIKNLEPNIVAKSLHQMFSRFGIILSCK 149
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND--KQVFVGPFLRKQERESTADKT 216
VATD G+S+GYGFVQF +EESAK A++ LNG L N KQ++V F+R++ER+ +
Sbjct: 150 VATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREERQHIGGAS 209
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F NVY KNL + T+DDL ++F FG ITS VM+D DG+SKCFGFVN++ + A +V
Sbjct: 210 KFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAEEAV 269
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK D YVG+A++K ER+ ELK KF++ + K +G NLY+KNLD SI D+
Sbjct: 270 EKLNGKIISDVALYVGRAKRKQERQAELKEKFDKERNDKIRKSKGCNLYLKNLDCSIDDE 329
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG-KMVVSKPLYVA 395
L+ LF F I +CKVM D G S+G GFV F+T E A+KA++ N K+V +K LYV
Sbjct: 330 YLRNLFGRFDDIGTCKVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTKLLYVC 389
Query: 396 LAQRKEERRARL--QFSQMRPPVGPRMPMYPP-VAPGLGQQLFYGQGPP---IIPPQPGF 449
+AQRKEER A L QF++ R VG R P P +AP + ++G G P + P GF
Sbjct: 390 VAQRKEERSAILAAQFAR-RHMVGARTPAMPQNIAP---RPFYFGYGVPGVLVRPQATGF 445
Query: 450 GYQQQ---LVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR-G 505
GYQQ ++PG+ P P + RP + P QQ Q LP
Sbjct: 446 GYQQYPQPVIPGLNPG--APSLMMPYHMLRPIHHQ----PQQQMAQ---------LPNWN 490
Query: 506 RIYRY-PPGCNIPD----VPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALAN 560
+I RY P CN P P ++P + + S+ +LA+ALA+
Sbjct: 491 QIVRYMPNACNGPTNSAMAPQMDFVAPVVPQISVLTDSVVTAPSISEEPSIDSLATALAS 550
Query: 561 ASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 620
A PE+Q +LGE L PLV QLE ++A KVT MLLE+++ VL L+ES E L+ KV +AME
Sbjct: 551 AEPEKQHLILGERLQPLVAQLEPEHAGKVTEMLLELEKAVVLELIESAENLQEKVNQAME 610
Query: 621 VLRNVAQQQATGPSPTDRVASLSLN 645
LR ++ P+ +SLSL+
Sbjct: 611 SLRPKKEEGTNDPAEP---SSLSLS 632
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 282/647 (43%), Positives = 393/647 (60%), Gaps = 68/647 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ +G ++S+RVCR + TR SLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G P+RIM+S RDP++RKSG GN+FIKNLD+SIDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDILKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D G S+GYGFV F+ ++SA +I+K+NGMLLN K+VFVG F+ + +RE + +
Sbjct: 123 QDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAKLY 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN+ E E +L ++F ++G ITS VM DG S+ FGFV F+DP +A ++V
Sbjct: 183 TNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTE 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+GKK + K +YV +AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D++
Sbjct: 243 LHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS FGTI S KVM D +G S+G GFV FS+ EEA+KA+T+MNG++V +KPLYV LA
Sbjct: 303 LRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLA 361
Query: 398 QRKEERRARL--QFSQMRPPVGPRM----PMYPPVA------PGLGQ-QLFYGQGPPI-I 443
QRK++R+A L Q+SQ + RM P+Y P A P + Q Q FYG I
Sbjct: 362 QRKKDRKAHLDSQYSQRNTNM--RMQSIGPIYQPGASNGYFVPTIPQPQYFYGPTQMTQI 419
Query: 444 PPQPGFGYQQQLVPGM-------RPNYFVPMVQPGQQNQRPGGRRSGTG----------P 486
QP + +Q Q+ G PN G + P G+++ P
Sbjct: 420 RSQPRWAFQSQVRAGTPQTAAPGYPNMATQHQNIGARAPVPAGQQAALARNVMVDTNARP 479
Query: 487 MQQAQQPIP-------LMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPG-------- 531
+ AQQ +P + P G Y+Y P P G+ G PG
Sbjct: 480 ISTAQQKMPGAVSAGSVHVPGARDTGSGYKYTPNMRNPLSQDQGI-GQAQPGQAQGMGQS 538
Query: 532 -PYDIGGMPFRDAAFSQPM--------------QTGALASALANASPEQQRTLLGENLYP 576
P GM + +Q M Q A+ LA A PE Q+ +LGE L+P
Sbjct: 539 QPGQAQGMGQAQSGQAQGMEQVQPDKAAVHVYGQEPLTATMLATAKPEDQKQMLGERLFP 598
Query: 577 LVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
L++++ + K+TGMLLE+D +++LH+LE E+LK +V +A+ +L+
Sbjct: 599 LIERMYPELTGKITGMLLEIDNSDLLHMLEHHESLKNQVEKAVAMLQ 645
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNYNAAHE 93
R + T++Y+ ++D +VN+ +L+++F + G + S +V +D + R G+G+V + E
Sbjct: 178 RAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSR--GFGFVAFEDPKE 235
Query: 94 ATRALDELN-----------------FTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+ EL+ T + R Y+ I + N+++KNLD
Sbjct: 236 AEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLD 295
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ID++ L FS FG I S KV D G+S+G+GFV F + E A A+ +NG ++ K
Sbjct: 296 DTIDDERLRREFSAFGTIKSAKVMMDD-GRSKGFGFVYFSSPEEATKAVTDMNGRIVGTK 354
Query: 197 QVFVGPFLRKQERESTAD 214
++V RK++R++ D
Sbjct: 355 PLYVTLAQRKKDRKAHLD 372
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/634 (44%), Positives = 382/634 (60%), Gaps = 57/634 (8%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRRS Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++R+SG GNIF+KNLDKSI+NK L+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NG LLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 VKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP 425
ALAQRKE+R+A L M+ PP G R YPP
Sbjct: 366 ALAQRKEDRQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYPP 425
Query: 426 --VAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP-----GMRPNYF-VPMVQPGQQNQRP 477
+A + QG P Q G + P MRP VP V Q
Sbjct: 426 SQIAQLRPSPCWTAQGARPHPFQNKPGAIRPAAPRVPFSTMRPTSSQVPRVMSTQYVANT 485
Query: 478 GGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
+ G P A P + R +PR Y+Y G P + P + P
Sbjct: 486 STQAVGPRPAAAAAAATPAV--RSVPR---YKYAEGVCNPQQHLNAQPQVTMQQP----- 535
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
A Q AS LA+A P++Q+ +LGE L+P + + A K+TGMLLE+D
Sbjct: 536 ------AVHVQGQKTLTASMLASAPPQEQKQMLGERLFPPIQAMHPTLAGKITGMLLEID 589
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
+E+LH+LESP++L++KV EA+ VL+ ++AT
Sbjct: 590 NSELLHMLESPQSLRSKVDEAVAVLQAHQVKEAT 623
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 307/698 (43%), Positives = 392/698 (56%), Gaps = 123/698 (17%)
Query: 14 VAAQPSPA--TNGIANNG---------GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
+ P+PA TNG +N Q S SLYVG+LD SV ++ LY+LF+
Sbjct: 5 TSTTPAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSS 64
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+GQV S+RVCRD TRRSLGY YVNYN RALDELN+T + GKP RIM+S RDP +
Sbjct: 65 IGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPAL 124
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAAN 184
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFG 240
+AI +NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ +++ +K+F
Sbjct: 185 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFE 244
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+FG ITS + RD++GKS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ER
Sbjct: 245 KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHER 304
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD---- 356
E EL+ ++E + E A K++G+NLYVKNL D + DDKL+ELF +GTITS KVMRD
Sbjct: 305 EEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPV 364
Query: 357 -----------------------------------------------PNGISRGSGFVAF 369
P G S+G GFV F
Sbjct: 365 ETATPESETKESANKENEKAAEGEKEPAAEEKEKEEEKEAEQKPEKKPLGKSKGFGFVCF 424
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVGPRMP------- 421
S+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R + +
Sbjct: 425 SSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMG 484
Query: 422 ---MYPPVAPGLGQQLFY--GQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQR 476
M P V G GQQ F Q + PPQPG PG P F PGQQ
Sbjct: 485 QAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGPF-----PGQQ--- 536
Query: 477 PGGRRSGTGPMQQAQ---QPIPL--MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG---- 527
GGR G GP QQ Q +P+ MQ +P G Y G VPG
Sbjct: 537 -GGR--GVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGPM 593
Query: 528 ----------------MLPGPYDIGGMPFRDAAFSQP---MQTGAL-ASALANASPEQQR 567
M PG GG R A QP G L A AL+ A P+QQ+
Sbjct: 594 RGGYGGGRGGVPLGGQMRPGQ---GG---RGQAVGQPGPETPVGVLTAQALSAAPPQQQK 647
Query: 568 TLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
+LGE LYP + + + A K+TGMLLEMD TE+L LL
Sbjct: 648 QMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLL 685
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/633 (43%), Positives = 385/633 (60%), Gaps = 53/633 (8%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 43 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 102
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCK
Sbjct: 103 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 162
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ----ERESTAD 214
VATD G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ ER+S +
Sbjct: 163 VATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSKLE 222
Query: 215 --KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
K +F N+YVKNL T+DD K+F +FG +TS + D G+S+ FGFVNF+ ++A
Sbjct: 223 EMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEA 282
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
++VE L+ ++ ++ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D
Sbjct: 283 QKAVETLHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDD 342
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
I D++L++ F FG+ITS KVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ SKPL
Sbjct: 343 IDDERLRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPL 402
Query: 393 YVALAQRKEERRARL-----QFSQMR---------------PPVGPRMPMYPPVAPGLGQ 432
YV+LAQR+E RR +L Q +Q+R P+ PG
Sbjct: 403 YVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGIPGGYLNGPMYYPPGPGAYPPPGGRG 462
Query: 433 QLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQN--QRPGG----------- 479
+ YGQ P ++PP+P + Q+ G +P+ P Q Q GG
Sbjct: 463 MMGYGQ-PGMLPPRPRYAPNNQVPAG------IPIPAPYGQAPPQAYGGIPGYPRAPRGP 515
Query: 480 -RRSGTGPMQQAQQPIPLMQPR-MLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
GP P PR P+G PP P P A P P
Sbjct: 516 PPAGRGGPPADPNSPPVNGAPRGNAPQGAAANRPPAGGQP--PAARAPTANRPQARQAPP 573
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
P T A ALANASP +Q+ +LGE +Y + + + A K+TGMLLEMD
Sbjct: 574 AAVAAPTGEVPTITAA---ALANASPMEQKQMLGEVIYMKIAPSQPELAGKITGMLLEMD 630
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLRNVAQQQA 630
TE+LHLLESP+A+ +KV EA+ VL ++++
Sbjct: 631 NTELLHLLESPDAMNSKVNEALAVLHEFTKEES 663
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/639 (43%), Positives = 382/639 (59%), Gaps = 67/639 (10%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRR Y YVN+ +A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++R+SG GNIF+KNLDKSI+NK L+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTASAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP 425
ALAQRKEER+A L M+ PP G R YPP
Sbjct: 366 ALAQRKEERQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYPP 425
Query: 426 ------------VAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYF-VPMVQPGQ 472
A G F + I P P + MRP VP V Q
Sbjct: 426 SQIAQLRPSPCWTAQGARPHPFQNKPSAIRPAAPRVPFST-----MRPTSSQVPRVMSTQ 480
Query: 473 QNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGP 532
+ + G P A P + R +PR Y+Y G P + P + P
Sbjct: 481 RVANTSTQTVGPRPAAAAAAATPAV--RTVPR---YKYAAGVRNPQQHLNAQPQVTMQQP 535
Query: 533 YDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGM 592
A Q +T AS LA+A P++Q+ +LGE L+ + + A K+TGM
Sbjct: 536 ----------AVHVQGQET-LTASMLASAPPQEQKQMLGERLFRPIQAMHPTLAGKITGM 584
Query: 593 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
LLE+D +E+LH+LES ++L++KV EA+ VL+ ++AT
Sbjct: 585 LLEIDNSELLHMLESSQSLRSKVDEAVAVLQAHQVKEAT 623
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 286/605 (47%), Positives = 369/605 (60%), Gaps = 59/605 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A F S+SLYVGDL V DSQL+++FNQ+G V ++R+CRD +TRRSL Y YVNY+ +
Sbjct: 2 AASFSSSSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPAD 61
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD LN T + GK RIM+S RDP++RKSG GNIFIKNLDKS+D+KAL DTFS FGN
Sbjct: 62 AERALDTLNNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFGN 121
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKV TD S+G+GFV +++++SA AI K+NGM++ND++VFVGPF +ER T
Sbjct: 122 ILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKERGQTQ 181
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+ ++ NVYVKNLSE E++L+ + +G IT+ +M D KSK FGF NF+ PD+A
Sbjct: 182 E-LKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAK 240
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
VEA NGK F K YVG+AQKK ERE ELK KFE K++G+NLY+KN+DDSI
Sbjct: 241 NCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFET-------KYQGVNLYIKNIDDSI 293
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGIS-RGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
DKL+ F+ +GTITS KVMRD S +G GFV ++T +EASKA+ EM+G+MV +KPL
Sbjct: 294 DSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPL 353
Query: 393 YVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ----PG 448
YVA AQRKE RR L+ +Q G R+ P + G +FY QG P++ PQ P
Sbjct: 354 YVAFAQRKEIRRQHLE-AQHNKFKGNRIQPVPSMY--AGGPMFYNQGMPVVYPQMMPRPR 410
Query: 449 FGYQQQLVPG----MRPNYFVPMVQPGQQNQR-PGG-----RRSGTGPMQQAQQPIPLMQ 498
G+ Q + G M+PNY + +NQR PGG R G P Q+ + P M
Sbjct: 411 PGWNQPVPQGQGYPMQPNYPI-------RNQRGPGGAPNHPRGPGGAPNQRPRGP---MD 460
Query: 499 PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASAL 558
P VP A P P P QP T AL
Sbjct: 461 PNQ----------------QVPQAANPQ---PTPAPATAQEAVAVPSEQPQITLEYVEAL 501
Query: 559 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLE-MDQTEVLHLLESPEALKAKVAE 617
EQQ LGE LYPL+ + D A K+TGMLL+ + E+ L + + L K+ E
Sbjct: 502 PR---EQQNPFLGELLYPLIHASQPDAAGKITGMLLDSLTVQELFELAQRADKLGEKIKE 558
Query: 618 AMEVL 622
A+EVL
Sbjct: 559 ALEVL 563
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 106/204 (51%), Gaps = 15/204 (7%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ T++YV +L VN+ +L DL G++ ++ + D + +S G+G+ N+
Sbjct: 178 GQTQELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKS-KSKGFGFANFETP 236
Query: 92 HEATRALDELNFTPLNGKPIRIMYSY----RDPTIR-----KSGAGNIFIKNLDKSIDNK 142
EA ++ N +GK I + + R+ ++ K N++IKN+D SID+
Sbjct: 237 DEAKNCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFETKYQGVNLYIKNIDDSIDSD 296
Query: 143 ALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
L TF+ +G I S KV D S+G+GFV + + A A+ +++G ++ +K ++V
Sbjct: 297 KLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPLYVA 356
Query: 202 ----PFLRKQERESTADKTRFNNV 221
+R+Q E+ +K + N +
Sbjct: 357 FAQRKEIRRQHLEAQHNKFKGNRI 380
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 290/486 (59%), Positives = 347/486 (71%), Gaps = 39/486 (8%)
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML+NDKQV V PF+R+QERE T T+FNNV+VKNL+E TT++DL ++FG FG I+S
Sbjct: 1 GMLINDKQVVVTPFVRRQERELTNAATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAV 60
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VMRDA+G SKCFGFVNF + DDAA++VE +NGK F+DKEWYVG+AQKK ERE ELK KFE
Sbjct: 61 VMRDANGNSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFE 120
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
Q KE +KF+G+NLY+KN+DDSI D+KLKELFS FGT+ SCK+MR P G GSGFVA
Sbjct: 121 QLRKERTEKFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVAL 180
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPV-------GPRM 420
S+ +EA +A+ EMNGKMV SKPLYVA+AQRK+ERRA+L QF+Q+R V G
Sbjct: 181 SSKDEAMRAVNEMNGKMVGSKPLYVAVAQRKDERRAKLQAQFAQLRNVVANVPQMNGSPG 240
Query: 421 PMYPPVAPGLGQQLFYGQGPP-IIPPQP-GFGYQQQLVPGMR------PNYFVPMVQ-PG 471
P+YPP P +GQQ++YGQ P ++PPQP GFGYQ +VPGMR PNYF+P VQ PG
Sbjct: 241 PLYPPRPPAMGQQVYYGQPPHGLLPPQPSGFGYQHPMVPGMRPGGPQMPNYFLPAVQRPG 300
Query: 472 QQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRG--RIYRYPPGCNI-PDVPVAGVP--- 525
QQ QR G RR GP QQ PLMQ +M PRG R RY + PDV + G
Sbjct: 301 QQGQRMGNRR--PGPPFLHQQQQPLMQQQMAPRGNSRPMRYSQSSRVAPDVSLQGYSSLD 358
Query: 526 -GGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHD 584
GG LP D G + ALASALA+ASPEQQR +LGE LYPLVD+LEHD
Sbjct: 359 MGGALPNSSDTG------------LYMPALASALASASPEQQRVMLGEQLYPLVDRLEHD 406
Query: 585 NAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSL 644
+A KVTGMLLEMDQTEVLHL+ESPEALKAKVAEAM+VL+ + D ASLSL
Sbjct: 407 HAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLQMAQANAGASTNGIDHFASLSL 466
Query: 645 NDNIVS 650
N+ + S
Sbjct: 467 NEPLAS 472
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 14/206 (6%)
Query: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDN 177
R+ T + N+F+KNL + ++ L + F FG I S V D+ G S+ +GFV F N
Sbjct: 20 RELTNAATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRDANGNSKCFGFVNFKN 79
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN-------------NVYVK 224
+ A A++ +NG + NDK+ +VG +K ERE+ K +F N+Y+K
Sbjct: 80 ADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAEL-KVKFEQLRKERTEKFQGVNLYLK 138
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
N+ ++ ++ LK++F FG + S +MR G+ GFV D+A R+V +NGK
Sbjct: 139 NVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMV 198
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQ 310
K YV AQ+K ER +L+ +F Q
Sbjct: 199 GSKPLYVAVAQRKDERRAKLQAQFAQ 224
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+++V +L D L ++F G + S V RD + S +G+VN+ A +A +A++
Sbjct: 30 NNVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRD-ANGNSKCFGFVNFKNADDAAKAVE 88
Query: 100 ELNFTPLNGK---------------PIRIMYS-YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
+N N K +++ + R K N+++KN+D SID++
Sbjct: 89 NINGKVFNDKEWYVGRAQKKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEK 148
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS FG + SCK+ GQ G GFV +++ A A++++NG ++ K ++V
Sbjct: 149 LKELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVA 208
Query: 204 LRKQERES 211
RK ER +
Sbjct: 209 QRKDERRA 216
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F +LY+ ++D S++D +L +LF+ G V S ++ R + +G G+V ++ EA
Sbjct: 129 KFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRS-PQGQIVGSGFVALSSKDEAM 187
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA++E+N + KP+ + + R
Sbjct: 188 RAVNEMNGKMVGSKPLYVAVAQR 210
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 278/624 (44%), Positives = 386/624 (61%), Gaps = 87/624 (13%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V+TSLYVG+L+ +VN++ L+++FN +G V S+RVCRD TRRSLGY YVN+ A ++ RA
Sbjct: 78 VNTSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERA 137
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L++LN+TP+ G+P RIM+S RDP R++G GNIFIKNLD++IDNKALHDTF+ FG ILSC
Sbjct: 138 LEQLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSC 197
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVA++ G S GYGFV +++ ++A++AI +NGMLLNDK+V+VG + K++R++ ++ R
Sbjct: 198 KVASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEAR 256
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ NVYVKNL T+++ +K+F ++G ITS A+ D +GKS+ FGFVNF + + AA++
Sbjct: 257 AHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKA 316
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN +F ++ ++G+AQKK ERE EL+ +E + E K++G+NLY+KNL + D
Sbjct: 317 VEELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDD 376
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++L+E F+ FGT TS KVMR P G SRG GFV +S EEA+KA+ EMNGKM+ ++PLYVA
Sbjct: 377 ERLQEEFAPFGTTTSAKVMRTPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVA 436
Query: 396 LAQRKEERRARL-----QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP 445
LAQRK+ R +L Q +Q+R MYP APG ++Y P
Sbjct: 437 LAQRKDVRHQQLAAQMMQHNQLRLQQQQAAAAAAAQMYPG-APG----MYY--------P 483
Query: 446 QPGFGYQQQLVPG-MRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
QP PG +RP Y ++Q G PM A QP
Sbjct: 484 QPPAAAGMGQFPGQVRPQYAPGIMQ-------------GMPPM--AGQPAG--------- 519
Query: 505 GRIYRYPPGCNIPDVPVAGVPGGMLPGPY--------------------DIGGMPFRDAA 544
YPPG P GGM P Y G R AA
Sbjct: 520 ----PYPPGQFPP-------AGGMFPQGYRPPRPPRGAAAPPAGAPAGVPAGAGAPRTAA 568
Query: 545 F-SQPMQTGA----LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQT 599
+QP+Q A+ALANASPE+Q+ +LGE +YP + + A K+TGM+LE+
Sbjct: 569 VPAQPVQPAQPEVLTAAALANASPEEQKQMLGEAIYPKIASTQPQLAGKLTGMILELPVG 628
Query: 600 EVLHLLESPEALKAKVAEAMEVLR 623
E+LHL+E EAL +KV EA+ VLR
Sbjct: 629 ELLHLVEDDEALASKVDEALTVLR 652
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 306/697 (43%), Positives = 391/697 (56%), Gaps = 123/697 (17%)
Query: 14 VAAQPSPA--TNGIANNG---------GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
+ P+PA TNG +N Q S SLYVG+LD SV ++ LY+LF+
Sbjct: 5 TSTTPAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSS 64
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+GQV S+RVCRD TRRSLGY YVNYN RALDELN+T + GKP RIM+S RDP +
Sbjct: 65 IGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPAL 124
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAAN 184
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFG 240
+AI +NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ +++ +K+F
Sbjct: 185 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFE 244
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+FG ITS + RD++GKS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ER
Sbjct: 245 KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHER 304
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD---- 356
E EL+ ++E + E A K++G+NLYVKNL D + DDKL+ELF +GTITS KVMRD
Sbjct: 305 EEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPV 364
Query: 357 -----------------------------------------------PNGISRGSGFVAF 369
P G S+G GFV F
Sbjct: 365 ETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCF 424
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVGPRMP------- 421
S+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R + +
Sbjct: 425 SSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMG 484
Query: 422 ---MYPPVAPGLGQQLFY--GQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQR 476
M P V G GQQ F Q + PPQPG PG P F PGQQ
Sbjct: 485 QAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGPF-----PGQQ--- 536
Query: 477 PGGRRSGTGPMQQAQ---QPIPL--MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG---- 527
GGR G GP QQ Q +P+ MQ +P G Y G VPG
Sbjct: 537 -GGR--GVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGPM 593
Query: 528 ----------------MLPGPYDIGGMPFRDAAFSQP---MQTGAL-ASALANASPEQQR 567
M PG GG R A QP G L A AL+ A P+QQ+
Sbjct: 594 RGGYGGGRGGVPLGGQMRPGQ---GG---RGQAVGQPGPETPVGVLTAQALSAAPPQQQK 647
Query: 568 TLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
+LGE LYP + + + A K+TGMLLEMD TE+L L
Sbjct: 648 QMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGL 684
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/411 (57%), Positives = 301/411 (73%), Gaps = 15/411 (3%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDL+ SV ++QLY+ F+ +G VVS+RVCRDL TRRSLGY YVN+ ++ +A A+
Sbjct: 31 TSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAI 90
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D LNF +NGKPIR++YS RDP +R+SG GNIFIKNLDK+IDNKAL DTF+ FG I S K
Sbjct: 91 DVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAK 150
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA DS G S+GYGFVQF+ E+A++AID +NGM LNDKQV+VGPF R+ +R ST + +F
Sbjct: 151 VAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADR-STQGEAKF 209
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNVYVKNLSE +++ L++ F E G +TS +M+D +GKSK FGFV F+ P+ AA +VE
Sbjct: 210 NNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVEN 269
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
L+G D+K W V +AQKK ERE ELK KFE +E +K G NLY+KNL++ D+KL
Sbjct: 270 LDGYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKL 329
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ELF+EFGTITSC+VMRD +G SRGS FVAFS+ +EA++A+TEMNGKMV +KPLYVALAQ
Sbjct: 330 RELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQ 389
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF 449
RKEE P G Y PV G G+ + P PG+
Sbjct: 390 RKEE-----------PHAGRWHAGYGPVHATAGCS---GRADVLRPTAPGY 426
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 268/608 (44%), Positives = 377/608 (62%), Gaps = 51/608 (8%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
A++G D +TSLYVG+LD SV ++ L+++F+ +G V S+RVCRD TR+SLGY Y
Sbjct: 65 ASSGTPSDGNAPKNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAY 124
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
VNY+ A + +AL+ELN++ + G+ RIM+S RDP++RK+G GNIFIKNLD +IDNKALH
Sbjct: 125 VNYHNADDGEKALEELNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALH 184
Query: 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205
DTFS FG ILSCKVA D G S+GYGFV F + +SA +AI+ +NGMLLNDK+V+VG +
Sbjct: 185 DTFSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVS 244
Query: 206 KQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+++R+S A K F NVY+KN+ T+++ +F +FG ITS ++++D GK + FGF
Sbjct: 245 RRDRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGF 304
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
VNF+ + A ++V+ +N +F K+ YVG+AQK++ERE EL+ ++EQ E K++G+N
Sbjct: 305 VNFESHEAAQKAVDEMNDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVN 364
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L++KNL D + D+ LK FS FGTITS KVM D NG S+G GFV +S+ EEA+KA+ EMN
Sbjct: 365 LFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMN 424
Query: 384 GKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPII 443
+M+ KPLYVALAQRK+ RR++L+ +Q++ RM A G+ Q
Sbjct: 425 QRMLAGKPLYVALAQRKDVRRSQLE-AQIQARNQFRMQQ-QVAAAGMSAQ---------- 472
Query: 444 PPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPI--PLMQPRM 501
FG +PG Y+ P P R + P+ QP M
Sbjct: 473 -----FG-----IPGAM--YYGPGGYPLPAGARGVPMPHPNMMPPNGKWPVDGAAPQPGM 520
Query: 502 LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGAL------A 555
+P YPPG P+ P G P ++P G Q GA+
Sbjct: 521 VP-----VYPPGVAAPNFP--GYPRPVVPSEQPAG----------QEASNGAVPVPAFDM 563
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
+A + +PE Q+ +LGE YPL+ Q E + A K+TGMLLEMD E+L L++ EAL KV
Sbjct: 564 NAFSAETPENQKQILGEYFYPLIAQREAELAGKITGMLLEMDNAELLGLVQDIEALNGKV 623
Query: 616 AEAMEVLR 623
EA+ VL+
Sbjct: 624 DEALSVLK 631
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 278/620 (44%), Positives = 370/620 (59%), Gaps = 57/620 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TR SLGY YVN+ + +A R L+
Sbjct: 3 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLET 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + GKP+RIM+S RDP++RKSG GNIF+KNL+KSIDN+AL D FS FGNILSCKV
Sbjct: 63 MNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKVV 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
+D G S+GYGFV F+ +ESA+ AI+K+NG++L +VFVG F ++ERE A F
Sbjct: 123 SDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELELGARAREF 181
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E L +IFG FG S VM D G+SK FGFV++ +DA R+V+
Sbjct: 182 TNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDE 241
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQKK ER+ ELK FEQ ++ +++G+NLYVKNLDD+I D++L
Sbjct: 242 MNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDERL 301
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FGTITS KVM + G SRG GFV FS +EA+KA+TEMNGK+V SKPLYVALAQ
Sbjct: 302 RTEFSPFGTITSAKVMME-GGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALAQ 360
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPG 458
RKEER+A L MR + P + P Y Q P Y VP
Sbjct: 361 RKEERQAHLTNQYMRRMANIQTFANPVLNP-------YHQ------PTSSSRYIMTTVPS 407
Query: 459 --MRPNYF----VPMVQPGQQNQRPGGR----------------RSGTGPMQQAQQPIPL 496
R +Y+ VP ++ PGGR R PM+ A P+
Sbjct: 408 SQTRTSYYPYGQVPQLRTSSHWGPPGGRLPPFPTVSGVVRPKTPRPPFNPMRSASGPV-- 465
Query: 497 MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA--- 553
PRM+ R+ P P P +P Y F PMQ
Sbjct: 466 --PRMMTTQRVVNPPNQVFGPPRP-PFIPNLRAVQQYKYAAGVRNPKRFELPMQINIPQP 522
Query: 554 ----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLH 603
AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH
Sbjct: 523 AVHAAAQEVLTASMLADALPQEQKQMLGERLFPLIQVMHPALAGKITGMLLEIDNSELLH 582
Query: 604 LLESPEALKAKVAEAMEVLR 623
+LESPE+L++KV EA+ VL+
Sbjct: 583 MLESPESLRSKVDEAVAVLQ 602
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F+ G + S +V + S G+G+V ++A EA
Sbjct: 281 RYQGVNLYVKNLDDTIDDERLRTEFSPFGTITSAKVM--MEGGHSRGFGFVCFSAPDEAA 338
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R R++ N +++ +
Sbjct: 339 KAVTEMNGKLVTSKPLYVALAQRKEE-RQAHLTNQYMRRM 377
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 300/698 (42%), Positives = 404/698 (57%), Gaps = 118/698 (16%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKAL 122
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 123 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 182
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 183 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 242
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN++ TE++ +++F ++G +TS+++ RD +GKS+ FGFVNF AA++V
Sbjct: 243 NFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAV 302
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F +E YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + DD
Sbjct: 303 EELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDD 362
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++FSEFG ITS KVMRD
Sbjct: 363 KLRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKK 422
Query: 359 -----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QM 412
G S+G GFV FS ++A+KA+ EMN +MV KPLYVALAQRK+ R+++L+ S Q
Sbjct: 423 VERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQA 482
Query: 413 RPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP--QPGFGYQQQLVPGMRPNYF------ 464
R + RM A GL QQ Y Q P P QPGF L PG R F
Sbjct: 483 RNQL--RMQQAAAQA-GLPQQ--YMQAPVYYAPGQQPGF-----LPPGGRGMPFPQGGIG 532
Query: 465 VPMVQPGQQNQRPG-GRRSGTGPMQQAQQPI-PLMQ------------------------ 498
+P VQ G+ Q P ++ G G M Q Q PI PL Q
Sbjct: 533 MPAVQGGRPGQFPPYAQQGGRGGMPQ-QLPIYPLGQFPPGTYPQPNNPQFLAAIQQVQQQ 591
Query: 499 ---------------------PRMLPRG-RIYRYPPGCNIPDVPVAGVPGGMLPGPYDI- 535
P+ +P G + YPP + +AG G G +
Sbjct: 592 AAALGTGRGGPGGRGMQGMPIPQGMPGGPGLAGYPPNGRPQNGNMAGRGGPNRGGSFAAG 651
Query: 536 -GGMPFRD--AAFSQPMQTGALASAL-ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTG 591
GG+P A + T L S L A + Q+ +LGENL+P + ++ + A K+TG
Sbjct: 652 RGGVPPAGPVGATGELSATALLQSQLAATTNIHAQKQILGENLFPKIQAIQPELAGKITG 711
Query: 592 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
MLLEMD E++HLLE AL AKV EAM V + Q
Sbjct: 712 MLLEMDNNELVHLLEDEAALLAKVNEAMAVYDEYVKSQ 749
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/603 (45%), Positives = 372/603 (61%), Gaps = 28/603 (4%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A R
Sbjct: 8 FPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILS
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE A
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F N+YVKNL E L+ +F FG + S VMRD G S+ FGFVNF ++A +
Sbjct: 187 AMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI
Sbjct: 247 AVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+KL++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG+++ +KPLYV
Sbjct: 307 DEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYV 365
Query: 395 ALAQRKEERRARL------QFSQMRPPVGPRMPMY--------PPVAPGLGQQLFYGQGP 440
ALAQRKEER+A L + S +R GP + + P V Q +Y G
Sbjct: 366 ALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFHQPTSYFLPSVPQPPAQAAYYASGL 425
Query: 441 PIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPR 500
P + P P + P RP+ +V+P ++RP + S ++QA +P P
Sbjct: 426 P-MQPTPRW-----TAPPPRPSS-ASVVRPPAMSRRPPAQVSS---VRQASTQVPPPVPH 475
Query: 501 MLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALAN 560
I G + G P P ++ A Q AS LA
Sbjct: 476 TQRVANIGTQTTGASGVGYSTPGGPLLTHRYPSATHNHGVQEPAVRILGQEPLTASMLAA 535
Query: 561 ASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 620
A +Q+ ++GE LYPL+ A K+TGMLLE+D +E+L +LESPE+L AKV EA+
Sbjct: 536 APLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALA 595
Query: 621 VLR 623
VL+
Sbjct: 596 VLQ 598
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 117/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF++ G+++SV+V RD S S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSG-HSRGFGFVNFQKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ ++N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVMDMNGKEVSG---RLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG +L
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIL 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 282/633 (44%), Positives = 383/633 (60%), Gaps = 57/633 (9%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TR S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI+K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRM----------PMYPP--VAPG 429
ALAQRKEER+A L M+ PP G M YPP +A
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQIAQL 425
Query: 430 LGQQLFYGQGPPIIPPQPGFGYQQQLVPG--------MRP-NYFVPMVQPGQQNQRPGGR 480
+ QG P P + PG MRP + +P V Q+ +
Sbjct: 426 RPSPRWTAQG---ARPHPFQNKPSAIRPGAPRVPFSTMRPASSQIPRVTSTQRVANTSTQ 482
Query: 481 RSGTGPMQQAQQPIPLMQP--RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGM 538
G P A P R +PR Y+Y G P + P + P
Sbjct: 483 TVGPRPAAAAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHLNAQPQVTMQQP------ 533
Query: 539 PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
A Q +T AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D
Sbjct: 534 ----AVHVQGQET-LTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDN 588
Query: 599 TEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
+E+L++LESPE+L++KV EA+ VL+ ++AT
Sbjct: 589 SELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 621
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 289/692 (41%), Positives = 396/692 (57%), Gaps = 129/692 (18%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 58 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 117
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+GAGNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 118 LEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSC 177
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 237
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ T+++ +++F +FG +TS+++ RD +GKS+ FGFVNF + AA++
Sbjct: 238 ANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + D
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDD 357
Query: 336 DKLKELFSEFGTITSCKVMRDP-------------------------------------- 357
DKL+ +FSE+G ITS KVMRD
Sbjct: 358 DKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKG 417
Query: 358 ---NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMR 413
G S+G GFV FS ++A+KA+TEMN +MV KPLYVALAQRK+ R+++L+ S Q R
Sbjct: 418 DRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQAR 477
Query: 414 PPVGPRMPMYPPVAPGLGQQ------LFYGQGPPIIPPQPGFGY---QQQLVPGMRPNYF 464
+ RM A G+ QQ + GQ P +P G G Q +VPG++
Sbjct: 478 NQL--RMQQAAAQA-GMPQQYMQAPVYYAGQQPGFMPAPGGRGVPFPQGGIVPGVQGG-- 532
Query: 465 VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPV--- 521
+PGQ + GGR G P QQ M P P I ++ PG P+ P
Sbjct: 533 ----RPGQYPYQQGGR--GGVPPQQ-------MPPMGYP---INQFGPGAFPPNTPQYMA 576
Query: 522 ------------------------AGVPGGMLPGP----YDIGGMPFRDAAFSQP----- 548
AG+P G+ GP Y G P P
Sbjct: 577 AMGQVGALGGGRGGPAGRGPQGIPAGIPQGLQGGPAVPGYPPAGRPQNGGGRGTPRGNAN 636
Query: 549 -MQTGALASALANA------------------SPEQQRTLLGENLYPLVDQLEHDNAAKV 589
M G AS + A P+ Q+ ++GENL+P + ++ A K+
Sbjct: 637 FMAAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKI 696
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
TGMLLEMD E+++L E AL KV EA+ V
Sbjct: 697 TGMLLEMDNAELINLFEDDNALNVKVQEALAV 728
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 288/691 (41%), Positives = 396/691 (57%), Gaps = 128/691 (18%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 58 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 117
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+GAGNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 118 LEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSC 177
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 237
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ T+++ +++F +FG +TS+++ RD +GK++ FGFVNF + AA++
Sbjct: 238 ANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQA 297
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + D
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDD 357
Query: 336 DKLKELFSEFGTITSCKVMRDP-------------------------------------- 357
DKL+ +FSE+G ITS KVMRD
Sbjct: 358 DKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKKGD 417
Query: 358 --NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRP 414
G S+G GFV FS ++A+KA+TEMN +MV KPLYVALAQRK+ R+++L+ S Q R
Sbjct: 418 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARN 477
Query: 415 PVGPRMPMYPPVAPGLGQQ------LFYGQGPPIIPPQPGFGY---QQQLVPGMRPNYFV 465
+ RM A G+ QQ + GQ P +P G G Q +VPG++
Sbjct: 478 QL--RMQQAAAQA-GMPQQYMQAPVYYAGQQPGFMPAPGGRGVPFPQGGIVPGVQGG--- 531
Query: 466 PMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPV---- 521
+PGQ + GGR G P QQ M P P I ++ PG P+ P
Sbjct: 532 ---RPGQYPYQQGGR--GGVPPQQ-------MPPMGYP---INQFGPGAFPPNTPQYMAA 576
Query: 522 -----------------------AGVPGGMLPGP----YDIGGMPFRDAAFSQP------ 548
AG+P G+ GP Y G P P
Sbjct: 577 MGQVGALGGGRGGPAGRGPQGIPAGIPQGLQGGPAVPGYPPAGRPQNGGGRGTPRGNANF 636
Query: 549 MQTGALASALANA------------------SPEQQRTLLGENLYPLVDQLEHDNAAKVT 590
M G AS + A P+ Q+ ++GENL+P + ++ A K+T
Sbjct: 637 MAAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKIT 696
Query: 591 GMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
GMLLEMD E+++L E AL KV EA+ V
Sbjct: 697 GMLLEMDNAELINLFEDDNALNVKVQEALAV 727
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/625 (44%), Positives = 378/625 (60%), Gaps = 74/625 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVG+LD SV +S L+++F+ +GQV ++RVCRD +++SLGY YVN+ + + +AL+
Sbjct: 47 ASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALE 106
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
ELN+TP+ GK RIM+S RDP++R++G+GNIFIKNL +IDNK LHDTFS FG ILSCK+
Sbjct: 107 ELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKI 166
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK--TR 217
ATD G S+G+GFV ++ ESAK+AI+ +NGMLLND +V+VGP L K++R+S +
Sbjct: 167 ATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIAN 226
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN++ ED L++ F FG I+S + +D GKS+ FGFVNF+ +DA ++VE
Sbjct: 227 FTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVE 286
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LN K D ++ YVG+AQKK ER LK ++E + +E +K++G NL+VKNLDDSI D K
Sbjct: 287 ELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAK 346
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E F +GTITS KVM D G S+G GFV +S+ EEA+KA+TEM+ +MV KPLYVALA
Sbjct: 347 LEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALA 406
Query: 398 QRKEERRARL-QFSQMRPPVGPRMPMYPPVAP-GLGQ---QLFYGQGPPIIPP------- 445
QRKE RR++L Q Q R +M M A G+GQ +FYGQ P +PP
Sbjct: 407 QRKEVRRSQLSQQIQAR----NQMRMQQAAAQGGMGQFVAPMFYGQNPGFLPPGARGAPF 462
Query: 446 QPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL-MQPRM--- 501
RP VP V PGQ P G QP+P+ MQP
Sbjct: 463 AAPGQQMMMQQGMPRPGQGVP-VSPGQFRVGPNG------------QPVPMYMQPVFNEY 509
Query: 502 -----LPRGRIYRYPPGCNIPDVPVAGVPGGMLP-----GPYDIGGMPFRDAAFSQPMQT 551
LP+ R Y+ G PG P G + G +P
Sbjct: 510 PQNGRLPQQRYYQ------------GGRPGQQPPQAGPRGKREDGAVP------------ 545
Query: 552 GALASALANASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLES 607
+LA L PEQQ+ +LGE LYPL+ + + A K+TGM+LEMD ++L LLE
Sbjct: 546 -SLAQVLPQFPPEQQKRMLGEELYPLIVATGKAQDPEAAGKITGMMLEMDNQQILALLED 604
Query: 608 PEALKAKVAEAMEVLRNVAQQQATG 632
+ ++ EA+ ++A+
Sbjct: 605 RDLFNSQFEEALSAYEEYKNKEASA 629
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 274/603 (45%), Positives = 381/603 (63%), Gaps = 32/603 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SID+KAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 ACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREAELGAQALE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNLS E L+ +F FG + S VMRD G S+ FGFVNF+ ++A ++V+
Sbjct: 190 FTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ ++ YVG+AQK+ ER+ ELK +FEQ ++ ++ G+NLYVKNLDDSISD+K
Sbjct: 250 HMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNLDDSISDEK 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ +FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG +V +KPLYVALA
Sbjct: 310 LRTVFSPYGVITSAKVMTEGDH-SKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALA 368
Query: 398 QRKEERRARLQFSQM----------RPPVG----PRMPMYPPVAPGLGQQLFYGQGPPII 443
QRKEER+A L M RP +G P P A Q G +
Sbjct: 369 QRKEERKAILTNQYMKRLSTVQALSRPVLGSFQQPNSYFLPTGAQPPAQAPCCGSSGSVA 428
Query: 444 PPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
P QP + Q RP+ +V+P +RP ++ ++QA +P + P
Sbjct: 429 PVQPAPRWTAQ---PQRPST-ASVVRPPGLPRRP---QANVSSVRQASTQVPHLAPHTKK 481
Query: 504 RGRIYRYPPG---CNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALAN 560
I G C+ + +P + G+P + A P Q AS LA
Sbjct: 482 VANIGTQTMGRAACSTEGPSL--LPCTCSSTVHIAHGVP--EPAVHVPGQEPLTASMLAA 537
Query: 561 ASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 620
A +Q+ ++GE LY L+ ++ A K+TGMLLE+D +++L +LESPE+L+AK+ EA+
Sbjct: 538 APLHEQKQMIGERLYHLIPEVYASLAGKITGMLLEIDNSDLLLMLESPESLQAKIEEAVA 597
Query: 621 VLR 623
VL+
Sbjct: 598 VLQ 600
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S++D +L +F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTE--GDHSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
+A+ E+N + KP+ + + R RK+ N ++K L
Sbjct: 348 KAVTEMNGCIVGTKPLYVALAQRKEE-RKAILTNQYMKRLS 387
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 299/668 (44%), Positives = 404/668 (60%), Gaps = 80/668 (11%)
Query: 8 PQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
P A PS + G AN+G S SLYVG+LD SV ++ L++LFN +G V
Sbjct: 40 PTEAAGSADDPSRLSAG-ANSGVPVSQNNSNSASLYVGELDPSVTEAMLFELFNNIGAVA 98
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEAT-----RALDELNFTPLNGKPIRIMYSYRDPTI 122
S+RVCRD TRRSLGY YVN++ + + RALDELN+T + GKP RIM+S RDP++
Sbjct: 99 SIRVCRDAVTRRSLGYAYVNFHNSSDVNLLTGERALDELNYTLIKGKPCRIMWSQRDPSL 158
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RK+G GN+FIKNLD SIDNKALHDTF+ FG+ILSCKVA D LG S+GYGFV + ESA+
Sbjct: 159 RKTGTGNVFIKNLDASIDNKALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAE 218
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFG 240
+AI K V+VG + K++R+S D K +F NVYVKN+ +E + +++F
Sbjct: 219 AAI----------KHVYVGHHVSKKDRQSKFDDMKLKFTNVYVKNIDPEISEAEFEELFK 268
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+FG +TS ++ D +GKS+ FGFVN+++ +DAAR+VE L+ ++ D++ YV +AQKK+ER
Sbjct: 269 KFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHER 328
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E EL+ ++EQ+ + +K+ G+NL+VKNLDD I D++L++ FS +GTITS K+M D NG
Sbjct: 329 EEELRKQYEQAKLDKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGK 388
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRM 420
S+G GFV FS+ +EA+KA+TEMN +MV KPLYVALAQRK+ RR++L+ SQ+ R+
Sbjct: 389 SKGFGFVCFSSPDEATKAITEMNQRMVSGKPLYVALAQRKDVRRSQLE-SQINARNQLRI 447
Query: 421 PMYPPVAPGLGQQ-------LFYGQGPP-IIPPQP----GFGYQQQLVPGMRPNYFVPMV 468
A G+ Q +FYGQGP +P P G + Q + RP + VP
Sbjct: 448 QQ-QAAAAGMSPQYGMPGAPMFYGQGPTGFMPAGPMTDRGMPFPQPAMVPSRPRW-VPQ- 504
Query: 469 QPGQQNQR------PG-----------GR--RSGTGPMQQAQQPIPLMQPRMLP-RGRIY 508
Q GQ N + PG GR RSG P Q P+M M P G
Sbjct: 505 QSGQPNGQAISQIYPGMSGYNAYLAIQGRSQRSGQVPRPQGIPSRPMMPMAMRPLLGSTR 564
Query: 509 RYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRT 568
Y G N + G+ D+G A++LA ASPE Q+
Sbjct: 565 MYRVGSNTRNGTKDGI---------DVGS------------DDLLTAASLAAASPENQKQ 603
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV--- 625
+LGE LYP V E A K+TGMLLEMD +E+LHL+E AL+AKV EA+ VL+
Sbjct: 604 MLGEVLYPKVQAQEPGFAGKITGMLLEMDNSELLHLIEDDVALRAKVEEALIVLKEYQKG 663
Query: 626 --AQQQAT 631
Q QAT
Sbjct: 664 VSVQDQAT 671
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 285/619 (46%), Positives = 383/619 (61%), Gaps = 61/619 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL ++ LYD F+Q G V+S+RVCRD+ TRRSLGY YVN+ +A RA+D
Sbjct: 12 SLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L GK IRIM+S RDP +RKSG GNIFIKNLDK+IDNK L+DTFS FGNILSCKV
Sbjct: 72 MNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGNILSCKVN 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR-F 218
+ G+S+GYGFV F+ EE+A AI+KL+GML+NDK+VFVG F + ER D+ + F
Sbjct: 132 VNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV++KNL + L ++FGE G + S A+ D +GKS+ FGFV+F+ + A + VE
Sbjct: 192 TNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEK 251
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
L+ K+F+ K+ +VG+AQKK ER+ ELK KFE+ E +++G+NLYVKNLDDSI+DD L
Sbjct: 252 LHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDIL 311
Query: 339 KELFSEFGTITSCKVMRDPN---GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+E F+ +G ITS KVM D + S+G GFV F++AEEA+KA+TEMNG+++ SKPLYVA
Sbjct: 312 REHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVA 371
Query: 396 LAQRKEERRARLQFSQM-RPPVGPRMPMYPPVAPGLGQQLFYGQGPPI--------IPPQ 446
LAQRK+ER+A LQ M R G R+ +P P G PPI I P
Sbjct: 372 LAQRKDERKAHLQQQYMQRVTTGMRLQAFPTNQPQYGNLYM---PPPIQQHPFRMSIRPT 428
Query: 447 PGFGYQQ--QLVP-------GMRPNYFVPMVQPGQQNQRPGGRRS-----GTGPMQQAQQ 492
P + + QLV ++P+ + PMV + Q PGG R+ G P+ +
Sbjct: 429 PRWSQVKYDQLVKLRSKIRFLIKPSQYGPMV----RGQMPGGPRAQNGVRGIAPITRFPA 484
Query: 493 PIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAA------FS 546
+ P I Y PG P LP P + +P AA
Sbjct: 485 NNYTARAGSRPNQSII-YKPGVRNP-----------LPTPAE-AQIPAEQAAQPKAPDTE 531
Query: 547 QPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
QP+ A+ LA A P++Q+ LLGE LYP + QL + K+TGMLLE++ +E+L +L+
Sbjct: 532 QPLN----ATILAAAPPQEQKQLLGERLYPSIRQLYPELCGKITGMLLEIENSELLAMLD 587
Query: 607 S---PEALKAKVAEAMEVL 622
+ P L+ KV EA+ VL
Sbjct: 588 TKSNPGLLQEKVQEAVTVL 606
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 314/704 (44%), Positives = 407/704 (57%), Gaps = 114/704 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 46 ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KN+ + T+++ +K+F +FG ITS + RD +GKS+ FGFVNF D
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN--------------------------------- 358
+ D+KL+ELFS FGTITS KVMRD
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPK 405
Query: 359 --------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR
Sbjct: 406 ESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 465
Query: 405 ARLQFS-QMRPPVG----------PRMPMYPPVAPGLGQQLFY--GQ-GPPIIPPQPGFG 450
++L+ S Q R + P+ M P V G GQQ F GQ G PQPG
Sbjct: 466 SQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGM- 524
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQ---QPIPL--MQ-PRMLPR 504
+PG RP + P PGQQ GGR G GP QQ Q IP+ MQ P +P
Sbjct: 525 --VMGIPGGRPGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFQGIPMGAMQGPGGIPN 575
Query: 505 GRIYRYPPGCNIPDVPVAG----VPGGMLPGPYDIGGMPFRDAAFSQPMQ---------- 550
G YP + AG VPG +P I G + P+Q
Sbjct: 576 G--MGYPQMAQVQFGRGAGGRGQVPG--MPMGQGIRGPGYGQGRGGAPVQGGPRPQGGRG 631
Query: 551 ----------------TGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGML 593
TG L A L+ P QQ+ +LGE LYP + + + A K+TGML
Sbjct: 632 QPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGML 691
Query: 594 LEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 637
LEMD E+L LLE EAL+AKV EA+ V + + G +P +
Sbjct: 692 LEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAE 735
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KN+D ++D++ +++F +FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FST + A A+ EMN K + + LYV AQ+K ER L+
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 287/681 (42%), Positives = 395/681 (58%), Gaps = 120/681 (17%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+GAGNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 179 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ T+D+ +++F +FG +TS+++ RD +GK++ FGFVNF + AA++
Sbjct: 239 ANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKA 298
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + D
Sbjct: 299 VDDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDD 358
Query: 336 DKLKELFSEFGTITSCKVMRDP-------------------------------------- 357
+KL+ +FSE+G ITS KVMRD
Sbjct: 359 EKLRAMFSEYGPITSAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKG 418
Query: 358 ---NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMR 413
G S+G GFV FS ++A+KA+TEMN +MV KPLYVALAQRK+ R+++L+ S Q R
Sbjct: 419 DRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQAR 478
Query: 414 PPVGPRMPMYPPVAPGLGQQ------LFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPM 467
+ RM A G+ QQ + GQ P +P G G VP + V
Sbjct: 479 NQL--RMQQAAAQA-GMPQQYMQAPVYYAGQQPGFMPAPGGRG-----VPFPQGGIPVQG 530
Query: 468 VQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPV------ 521
+PGQ + GGR G P QQ M P P I ++ PG P+ P
Sbjct: 531 GRPGQYPYQQGGR--GGVPPQQ-------MPPMGYP---INQFGPGAFPPNTPQYMAAMG 578
Query: 522 ---------------------AGVPGGMLPGPYDIG--GMPFRDAAFSQPMQTGALASAL 558
AG+P G+ P + G G P +A F M G AS +
Sbjct: 579 QVGALGGGRGGPAGRGPQGIPAGIPQGLQGAPANGGGRGTPRGNANF---MAAGRGASPV 635
Query: 559 ANA------------------SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTE 600
A P+ Q+ ++GENL+P + ++ A K+TGMLLEMD E
Sbjct: 636 PGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAE 695
Query: 601 VLHLLESPEALKAKVAEAMEV 621
+++L E AL KV EA+ V
Sbjct: 696 LINLFEDDNALNVKVQEALAV 716
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/596 (46%), Positives = 371/596 (62%), Gaps = 55/596 (9%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F S+SLYVGDL V++S L+++FNQ+G V ++R+CRD +TRRSL Y Y+NY+ + +A R
Sbjct: 5 FSSSSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAER 64
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN TP+ GK RIM+S RDP++RKSG GNIFIKNLDK++D+KAL+DTFS FGNILS
Sbjct: 65 ALDTLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFGNILS 124
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKV TD S+G+GFV ++++ESA+ AI K+NGM++N+++VFVGPF +ER +T +
Sbjct: 125 CKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSSKERGATQE-V 183
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
++ NV++KNLSE +E L + G IT+ +M D GKSK FGF NF+ D A +V
Sbjct: 184 KYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAKGAV 243
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E NGK F K YVG+AQKK ERE ELK KFE K++G+NLY+KNLDDSI D
Sbjct: 244 ENENGKMFSGKVIYVGRAQKKLEREAELKHKFE-------TKYQGVNLYIKNLDDSIDSD 296
Query: 337 KLKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+ FS +GTITS KVMRD G S+G GFV +ST +EASKA+ EM+G+MV SKPLYVA
Sbjct: 297 KLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAVAEMHGRMVGSKPLYVA 356
Query: 396 LAQRKEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLFY-GQGPPIIPPQPGFGYQ 452
AQRK+ RRA+L Q ++ + P +YPP P +FY G P++ P
Sbjct: 357 FAQRKDVRRAQLEAQHTKFKSSRMPVQSIYPPTGP-----IFYPPAGMPVVYP------- 404
Query: 453 QQLVPG-MRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYP 511
Q++P R + P+ Q GQ P Q Q PI PRG + P
Sbjct: 405 -QMIPRPPRAGWNGPVPQQGQY------------PPMQGQYPI------RNPRGGV---P 442
Query: 512 PGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQP--MQTGALASALANASPEQQRTL 569
P N + P P G P P ++P +Q + + + EQQ +
Sbjct: 443 PTGNHRNQPRPR-PDGQQPA----AQQPIAQQLIAEPQAVQPEVTLATVQSMPREQQNSF 497
Query: 570 LGENLYPLVDQLEHDNAAKVTGMLLE-MDQTEVLHLLESPEALKAKVAEAMEVLRN 624
LGE LYPL+ + D + K+TGMLL+ + E+ L + E L K+ EA++VL N
Sbjct: 498 LGELLYPLIHASQPDLSGKITGMLLDSLTVEELFTLYQRTELLADKIKEALDVLTN 553
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD S++ +L F+ G + S +V RD S G+G+V Y+ EA+
Sbjct: 278 KYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEAS 337
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E++ + KP+ + ++ R
Sbjct: 338 KAVAEMHGRMVGSKPLYVAFAQR 360
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 289/699 (41%), Positives = 402/699 (57%), Gaps = 129/699 (18%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYNA + +AL
Sbjct: 113 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGEKAL 172
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 173 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 232
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A +AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 233 VAQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 292
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+ T+++ +++F ++G +TS+++ R +GKS+ FGFVNF + A+++V
Sbjct: 293 NFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAV 352
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK F +E YVG+AQKK+ERE EL+ +E + +E A+K++G+NLY+KNL D + DD
Sbjct: 353 EELNGKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDD 412
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++FSE+G ITS KVMRD
Sbjct: 413 KLRQMFSEYGPITSAKVMRDSVVESAAEDEKDKENKKEDEEEKEGETAEKKAETKEKRKL 472
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG 417
G S+G GFV FS ++A+KA+TEMN +M+ +KPLYVALAQRK+ R+++L+ S Q R +
Sbjct: 473 GKSKGFGFVCFSNPDDATKAVTEMNQRMIDNKPLYVALAQRKDVRKSQLEASIQARNQL- 531
Query: 418 PRMPMYPPVAPGLGQQ-----LFY--GQGPPIIPPQPG----FGYQQQLVP--GMRPNYF 464
RM A G+ QQ ++Y GQ P +PP G F +P G RP +
Sbjct: 532 -RMQQAAAQA-GIPQQFMQQPVYYAPGQQPGFMPPAGGRGMPFAQGAMGIPPQGGRPGQY 589
Query: 465 VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML---------------------- 502
P GQQ G R G P Q P+ P
Sbjct: 590 PPYA--GQQ-----GGRGGMPPQQMPIYPMGAFPPNFAQPNNPQFLAAMQQIQAAAIQGG 642
Query: 503 ----PRGRIYRYPPGCNIPDVPVAGVP-----------------------GGMLP--GPY 533
+ PP IP PVAG P G P GP
Sbjct: 643 RGGPGPRGVQGMPP--QIPGGPVAGFPPNGRSQNGMGRGAGGNRGGFAGGRGGAPSAGPA 700
Query: 534 DIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGML 593
D+ + + T A+A SP QQ+ +LGE+L+P + ++ + A K+TGML
Sbjct: 701 DVN--------IAAVLHTQLAAAA----SPAQQKQILGESLFPKIQAIQPELAGKITGML 748
Query: 594 LEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
LEM+ E+++L+E AL AKV EAM V + QATG
Sbjct: 749 LEMENQELINLIEDEAALNAKVGEAMNVYDEYVKTQATG 787
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 280/642 (43%), Positives = 380/642 (59%), Gaps = 78/642 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TR S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL +NF + GKP+RIM+S RDP++RK G GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L + FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLWKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ PP G M P +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRTASVRAVPNQRAPPSGYFMAAVPQTQ---NHAAYY---PP 419
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
+ P P + Q G RP+ F Q RPG R M+ A +P +
Sbjct: 420 SQVAQLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQVPRV 470
Query: 498 QP----------------------------RMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
R +PR Y+Y G P + P +
Sbjct: 471 MSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHLNAQPQVTM 527
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
P A Q +T AS LA+A P++Q+ +LGE L+PL+ + A K+
Sbjct: 528 QQP----------AVHVQGQET-LTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TGMLLE+D +E+L++LESPE+L++K EA+ VL+ ++AT
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKAGEAVAVLQAHEAKEAT 618
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 295/724 (40%), Positives = 414/724 (57%), Gaps = 135/724 (18%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LDELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LDELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 179 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN+ T+DD + +F +FG +TS+++ RD + GKS+ FGFVNF +DA++
Sbjct: 239 ANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASK 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+VE LN K+F + YVG+AQKK+ERE EL+ +E + +E A K++G+NLY+KNLDD +
Sbjct: 299 AVEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVD 358
Query: 335 DDKLKELFSEFGTITSCKVMRD-------------------------------------- 356
DDKL++LFSEFG ITS KVMR+
Sbjct: 359 DDKLRQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAK 418
Query: 357 ----PN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS- 410
P G S+G GFV F ++A+KA+ EMN +MV KPLYVALAQRK+ R+ +L+ S
Sbjct: 419 ADKKPKLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKNQLEASI 478
Query: 411 QMRPPVGPRMPMYPPVAPGLGQQ-----LFYGQG--PPIIPPQPGFGYQQQLVPGMRPNY 463
Q R + RM A G+ QQ +FYG G P +PP G G +P +P
Sbjct: 479 QARNQL--RM-QQAAAAAGMPQQFMQAPVFYGPGSQPGFMPPAGGRG-----MPFPQPGM 530
Query: 464 FVPMVQPGQQNQRP---GGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPD-- 518
+P VQ G+ Q P G++ G G + Q P+ + + P+G +Y P N P
Sbjct: 531 GLPAVQGGRPGQFPAGYAGQQGGRGGLPQQIPPMYGIPGQFPPQG---QYQP--NNPQFI 585
Query: 519 ----------------VPVA-------GVPGGM--LPGPYDIGGMP-------------- 539
VPVA G+PG M +PG ++ G P
Sbjct: 586 AAMQQLQQSNLTAGRGVPVARGPGIQGGLPGSMPGMPGAANMPGYPPNARQQGAGAGAGR 645
Query: 540 ------------------FRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQL 581
RDAA ++ A +P QQ+ +LGE ++P + +
Sbjct: 646 GAGGRNQGPGFAGAAPQGGRDAAPAEGASVLQTQLAAVGNNPGQQKQILGEVIFPKIQAI 705
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ------ATGPSP 635
+ A K+TGMLLEM+ E++ L+E+ +L+AKV EA+ V + + Q A GP+
Sbjct: 706 HPELAGKITGMLLEMENAELVALIENEGSLRAKVDEALAVYDDYVRAQGGEAGDAPGPAK 765
Query: 636 TDRV 639
++
Sbjct: 766 EEKA 769
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 275/619 (44%), Positives = 380/619 (61%), Gaps = 43/619 (6%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGN+LS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NG+ LND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD+I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR----------PPVGPRMPMYPP---VAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ P + P P P +A Q PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQPAPPSGYFMAAVPQTQNHAAYYPP 425
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP-L 496
+ P P + Q G RP+ F +PG RP R M+ A +P +
Sbjct: 426 SQTAQLRPSPCWTAQ-----GARPHPF--QNKPGAI--RPAAPRVPFNTMRPASSQVPRV 476
Query: 497 MQPRML---------PRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMP---FRDAA 544
M P+ + PR + VP G+ + P + A
Sbjct: 477 MSPQRVANKSTKTVGPRPAAAAAAATPAVHTVPRYKYAAGVRNPQQHLNAQPQVKMQQPA 536
Query: 545 FSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
Q A+ LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE D +E+LH+
Sbjct: 537 VHVQGQETLTAAMLASAPPKEQKQMLGERLFPLIQAMHPTLAGKITGMLLETDNSELLHM 596
Query: 605 LESPEALKAKVAEAMEVLR 623
LESPE+L +KV EA+ VL+
Sbjct: 597 LESPESLCSKVDEAVVVLQ 615
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 280/642 (43%), Positives = 380/642 (59%), Gaps = 78/642 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TR S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL +NF + GKP+RIM+S RDP++RK G GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L + FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLWKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ PP G M P +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRTASVRAVPNQRAPPSGYFMAAVPQTQ---NHAAYY---PP 419
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
+ P P + Q G RP+ F Q RPG R M+ A +P +
Sbjct: 420 SQVAQLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQVPRV 470
Query: 498 QP----------------------------RMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
R +PR Y+Y G P + P +
Sbjct: 471 MSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHLNAQPQVTM 527
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
P A Q +T AS LA+A P++Q+ +LGE L+PL+ + A K+
Sbjct: 528 QQP----------AVHVQGQET-LTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TGMLLE+D +E+L++LESPE+L++K EA+ VL+ ++AT
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKADEAVAVLQAHEAKEAT 618
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 281/634 (44%), Positives = 382/634 (60%), Gaps = 57/634 (8%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRRS Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGN+LS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F E+A+ AI+K+NG+ LND +VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD+I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDAID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V ++PLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------------PPVGPRMPMYPPVA-------P 428
ALAQRKEER+A L M+ PP G M P P
Sbjct: 366 ALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYHPP 425
Query: 429 GLGQQL-----FYGQGPPIIPPQPGFGYQQQLVP-----GMRP-NYFVPMVQPGQQNQRP 477
QL + QG P Q G P MRP + VP V Q+
Sbjct: 426 SQTAQLRPSPCWTAQGARPHPFQNKPGAIHPAAPRVPFNTMRPASSRVPRVMSPQRVANT 485
Query: 478 GGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
+ G P A P + +PR Y+Y G P + P + P
Sbjct: 486 STKTVGPRPAAAAAAATPAVH--TVPR---YKYAVGVRNPQQHLNAQPQVKMQQP----- 535
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
A Q +T A+ LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE D
Sbjct: 536 -----AVHVQGQET-LTAAMLASAPPKEQKQMLGERLFPLIQAMHPTLAGKITGMLLETD 589
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
+E+LH+LESPE+L +KV EA+ VL+ ++AT
Sbjct: 590 NSELLHMLESPESLCSKVDEAVVVLQAHQAKEAT 623
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 281/645 (43%), Positives = 382/645 (59%), Gaps = 82/645 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TR S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI+K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ PP G M P +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQ---NHAAYY---PP 419
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
+ P P + Q G RP+ F Q RPG R M+ A I
Sbjct: 420 SQITQLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQI--- 467
Query: 498 QPRMLPRGRI-------------------------------YRYPPGCNIPDVPVAGVPG 526
PR++ R+ Y+Y G P + P
Sbjct: 468 -PRVMSTQRVANTSTQTVGPRPAAAAAAAAAATPAVRTVARYKYAAGVRNPQQHLNAQPQ 526
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
+ P A Q +T AS LA+A P++Q+ +LGE L+PL+ + A
Sbjct: 527 VTMQQP----------AVHVQGQET-LTASRLASAPPQKQKQMLGERLFPLIQAMHPTLA 575
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL+ ++AT
Sbjct: 576 GKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 620
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 279/616 (45%), Positives = 386/616 (62%), Gaps = 46/616 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+++RRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ +E+A AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L++IF FG S VM D G+SK FGFVNF+ ++A ++V
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRM------PMY--PPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + + MR GP + P Y PP+ + FY P++P
Sbjct: 370 RKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPPIPQPQTRAAFYSPS-PVVP 428
Query: 445 PQPGFGYQQQLVPGMRPNY--FVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML 502
+P + Q P P Y P+++ Q +R S M+QA +P + P+
Sbjct: 429 VRPATRWSAQ--PTRPPPYPAATPILRAAVQPRR---LLSNISTMRQASTQVPRVPPQAQ 483
Query: 503 PRGRIYRYPPGCNIPDVP-VAGVP--------------GGMLPGPYDIGGMPFRDAAFSQ 547
I +P P + G P G + PG +G + A
Sbjct: 484 RVANIGTQTISARVPSSPTLRGAPQYKYSLAVRNIQPMGSVPPGAQQVG-----EPAVHI 538
Query: 548 PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLES 607
Q AS LA A P++Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L LLES
Sbjct: 539 QGQEPLTASMLAAAPPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLES 598
Query: 608 PEALKAKVAEAMEVLR 623
PE+L +K+ EA+ VL+
Sbjct: 599 PESLHSKIEEAVAVLQ 614
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 281/645 (43%), Positives = 382/645 (59%), Gaps = 82/645 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TR S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI+K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ PP G M P +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQ---NHAAYY---PP 419
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
+ P P + Q G RP+ F Q RPG R M+ A I
Sbjct: 420 SQITQLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQI--- 467
Query: 498 QPRMLPRGRI-------------------------------YRYPPGCNIPDVPVAGVPG 526
PR++ R+ Y+Y G P + P
Sbjct: 468 -PRVMSTQRVANTSTQTVGPRPAAAAAAAAAATPAVRTVARYKYAAGVRNPQQHLNAQPQ 526
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
+ P A Q +T AS LA+A P++Q+ +LGE L+PL+ + A
Sbjct: 527 VTMQQP----------AVHVQGQET-LTASRLASAPPQKQKQMLGERLFPLIQAMHPTLA 575
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL+ ++AT
Sbjct: 576 GKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 620
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 284/628 (45%), Positives = 391/628 (62%), Gaps = 50/628 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+++RRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ +E+A AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L++IF FG S VM D G+SK FGFVNF+ ++A ++V
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRM------PMY--PPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + + MR GP + P Y PP+ + FY P++P
Sbjct: 370 RKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPPIPQPQPRAAFYSPS-PVVP 428
Query: 445 PQPGFGYQQQLVPGMRPNY--FVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP-LMQPRM 501
+P + Q P P Y P+++ Q +R S M+QA +P L +
Sbjct: 429 VRPATRWSAQ--PSRSPTYPAATPVLRAAVQPRR---LVSNISTMRQASTQVPRLTISSL 483
Query: 502 LPRGRIYRYPPGCNIPDVP-VAGVP--------------GGMLPGPYDIGGMPFRDAAFS 546
L I +P P + G P G + PG +G + A
Sbjct: 484 LVAANIGTQTVSARVPSSPTLRGAPHYKYSLAMRNIQPMGSVPPGAQQVG-----EPAVH 538
Query: 547 QPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
Q AS LA A P++Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L LLE
Sbjct: 539 VQGQEPLTASMLAAAPPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLE 598
Query: 607 SPEALKAKVAEAMEVLRNVAQQQATGPS 634
SPE+L +K+ EA+ VL+ QAT S
Sbjct: 599 SPESLHSKIEEAVAVLQ---AHQATEAS 623
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 282/615 (45%), Positives = 385/615 (62%), Gaps = 62/615 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY + RAL
Sbjct: 37 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERAL 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + + RIM+S RDP +RK+G GNIFIKNLD++IDNKALHDTF+ FGN+LSCK
Sbjct: 97 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G SRGYGFV ++N ESA +AI +NGMLLNDK+V+VG + K+ER++ D K+
Sbjct: 157 VATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKS 216
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F NV++KNL + ++ K+I +G I S V +D G S+ FGFVN+ + ++AA++V
Sbjct: 217 QFTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E+LN + D K+ + +AQKK ERE EL+ +EQ+ E K+ G+NLYVKNLDD D+
Sbjct: 277 ESLNEVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L F FGTITS K+MRD G S+G GFV FS+ +EA+KA++E++GKM+ SKPLYV+L
Sbjct: 337 RLVGEFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSL 396
Query: 397 AQRKEERRARL-----QFSQMR---------PPVG--PRMPMY--PPVAPGLGQQLFYGQ 438
AQR++ RR +L Q +Q+R P G P PMY PP G + YGQ
Sbjct: 397 AQRRDVRRQQLESQIAQRNQLRLQHQAAAGVPISGFMPGAPMYYQPPPGAYPGGRSMYGQ 456
Query: 439 GPPIIPPQP-GFGYQQQLVPGMRP---------NYFVPMVQPGQQNQRPGGRRSGTGPMQ 488
P PP+P G+ QQ VPGM Y +P + + G + G P
Sbjct: 457 -PGFAPPRPRGYPAGQQ-VPGMPIPSPYGPPPQGYMPANYRPARPARANGAQVQGGSPTA 514
Query: 489 QAQQP-IPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQ 547
+P +P PR P G VPV G P + GG
Sbjct: 515 NNVRPAVPASGPR----------PAG-----VPVRPAQGAAKPAKQEAGG---------- 549
Query: 548 PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLES 607
P+ AS LANA P +Q+ +LGE LYP + ++ + A K+TGMLLEM+ +E+L LLE+
Sbjct: 550 PLS----ASVLANAPPAEQKQMLGEALYPKIFNIQPELAGKITGMLLEMENSELLFLLEN 605
Query: 608 PEALKAKVAEAMEVL 622
EALK+KV EA+ VL
Sbjct: 606 EEALKSKVDEAIAVL 620
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 280/590 (47%), Positives = 373/590 (63%), Gaps = 48/590 (8%)
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
V+S+RVCRD+ TRRSL Y YVN+ +A RALD +NF + GKPIRIM+S RDP++RKS
Sbjct: 24 VLSIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKS 83
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GY FV F+ +++A AI
Sbjct: 84 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAI 142
Query: 186 DKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN + ++ LK++FG++G
Sbjct: 143 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYG 202
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
S VM D GKSK FGFV+F+ ++A ++VE +NGK + K +VG+AQKK ER+ E
Sbjct: 203 KTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 262
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
LK +FEQ +E +++G+NLY+KNLDD+I D+KL++ FS FG+ITS KVM + G S+G
Sbjct: 263 LKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKG 321
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPR-MPM 422
GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQRKEER+A L M+ G R +P
Sbjct: 322 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRALP- 380
Query: 423 YPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVP----MVQPG---QQNQ 475
A + Q G +P P Q Q RP Y+ P ++P QQ
Sbjct: 381 ----ANAILNQFQPAAGGYFMPAVP----QAQ----SRPPYYAPNQMTQIRPNPRWQQGG 428
Query: 476 RPGG-------RRSGTGPMQQAQQPIPLMQP-RMLPRG--RIYRYPPGCNI-PDVPVAGV 524
RP G R+SG P + P Q R LP R+ P G N+ P P A
Sbjct: 429 RPQGFQGMPNMRQSGPRPNLRHLAPAGNAQASRGLPGAPQRVGIPPTGPNLAPRPPAAAQ 488
Query: 525 PGGMLPGPYDIGGMPFRDAAFSQPMQTGA-----------LASALANASPEQQRTLLGEN 573
+P PY QP+Q AS LA A P++Q+ +LGE
Sbjct: 489 VPRAVP-PYKYASSVRSPHPAVQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGER 547
Query: 574 LYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 548 LFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQ 597
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 165/291 (56%), Gaps = 23/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 87 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 144
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + F +G
Sbjct: 145 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKT 204
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 205 LSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAEL- 263
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+Y+KNL +T ++ L+K F FG ITS VM + +G+SK F
Sbjct: 264 KRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGF 322
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 323 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 373
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G+ +SV+V D T +S G+G+V++ E
Sbjct: 174 AKEF--TNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEE 230
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N +NGK + R + I + N++IKNLD
Sbjct: 231 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 290
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 291 TIDDEKLRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 349
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 350 LYVALAQRKEER-----KAHLTNQYMQRIA 374
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/632 (43%), Positives = 377/632 (59%), Gaps = 47/632 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD T RSLGY YVN+ +A R + +
Sbjct: 111 SLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTD 170
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + GKP+R+M+S RDP++RKSG GN+F+KNL+KSI+NK+L+D FS+FGNILSCKV
Sbjct: 171 MNLYIIKGKPVRLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVI 230
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
TD G S+GYGFV F++ ESA+ AI K+NG+LLND ++FVG F +++RES A F
Sbjct: 231 TDDNG-SKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGHFKSRKDRESELGAQTREF 289
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ED L KIF +FG S VMRD G+SK FGFVNF +DA +++
Sbjct: 290 TNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDN 349
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + ++ Y G+AQKK ER+ +L+ FEQ + +++G+NLY+KNLDD I D+ L
Sbjct: 350 MNGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENL 409
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + NG S+G GFV FS EEA+ A+TEMNG++V SKPLYVALAQ
Sbjct: 410 RKEFSSFGTITSAKVMMN-NGRSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQ 468
Query: 399 RKEERRARL--QFSQMRPPV-GPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
RKEER+A L Q+ Q + P P G + F+ P+ Q Y
Sbjct: 469 RKEERKAHLANQYVQRMARIRSTATPTLGPYRTGASSRYFF---TPLTQSQSRGAYYS-- 523
Query: 456 VPGMRPNYFVPMV---QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYR--- 509
PN+F + Q R ++ TGP+ PLM + RI R
Sbjct: 524 -----PNHFAQLRSSPHWSAQRVRSHSFQTITGPIHPKFCRSPLMSTSHMSTSRISRRIT 578
Query: 510 --------------YPPGCN-IPDVPVAG--VPGGMLPGPYDIGGMPFRDAAFSQ----- 547
PPG IP + G Y G+P R ++
Sbjct: 579 TQRVTSPAHTLRPLCPPGTTFIPTLRSTQQYKYTGANYNHYQFIGIPPRIPTLTRQLVAH 638
Query: 548 -PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
P Q A+ S + A P+ Q+ +LGE L+PL+ L A K+TGMLL+ +E+L +L
Sbjct: 639 LPGQEPAIPST-STALPQPQKRVLGERLFPLIQDLHPTLAGKITGMLLDRQNSEILRMLN 697
Query: 607 SPEALKAKVAEAMEVLRNVAQQQATGPSPTDR 638
SPE L++K++EAM VL+ +++A P+ + R
Sbjct: 698 SPECLRSKISEAMAVLQAHNEKEAILPNVSIR 729
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD ++D L F+ G + S +V ++ RS G+G+V ++A EAT
Sbjct: 389 RYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVM--MNNGRSKGFGFVCFSAPEEAT 446
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDK 137
A+ E+N + KP+ + + R RK+ N +++ + +
Sbjct: 447 TAVTEMNGRLVASKPLYVALAQRKEE-RKAHLANQYVQRMAR 487
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 270/586 (46%), Positives = 365/586 (62%), Gaps = 61/586 (10%)
Query: 60 FNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119
F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD +NF + G+P+RIM+S RD
Sbjct: 18 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRD 77
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179
P++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ E
Sbjct: 78 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHE 136
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKK 237
+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++ LK+
Sbjct: 137 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKE 196
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
+F ++G S VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + ++ YVG+AQKK
Sbjct: 197 LFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKK 256
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ER+ ELK KFEQ ++ +++G+NLYVKNLDD + D++L++ FS FGTITS KVM +
Sbjct: 257 GERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME- 315
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVG 417
G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L M+
Sbjct: 316 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMAT 375
Query: 418 PRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRP 477
R P + P Y PP YF+ + P QN
Sbjct: 376 VRAVPNPVLNP-------YQPAPP-------------------SGYFMAAI-PQTQN--- 405
Query: 478 GGRRSGTGPMQQAQQPIPLMQPRMLPR-------GRIYRYPPGCNIPDVPVAGVPGGMLP 530
R+ Q L Q R PR Y+Y G P +A P +
Sbjct: 406 ---RAAYYSANQ------LAQLRPSPRWNDSRECAHSYKYAAGVRNPQQHMASQPQVAMQ 456
Query: 531 GPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVT 590
P A Q Q AS LA+A P++Q+ +LGE L+PL+ + A K+T
Sbjct: 457 QP----------AVLVQG-QEPLTASMLASAPPQEQKQMLGERLFPLIQDVHPSLAGKIT 505
Query: 591 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPT 636
GMLLE+D +E+LH+LESPE+L++K+ EA+ VL+ ++A S T
Sbjct: 506 GMLLEIDNSELLHMLESPESLRSKMDEAVAVLQAHQAKEAAQKSTT 551
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 87 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEK 144
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + FS +G
Sbjct: 145 MNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPA 204
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS +V TD G+S+G+GFV F+ E A+ A+D +NG LN +QV+VG +K ER++
Sbjct: 205 LSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELK 264
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 265 RKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 323
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 324 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 373
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 117/211 (55%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+F T++Y+ + ++D +L +LF++ G +S+RV D S +S G+G+V++ +
Sbjct: 174 AREF--TNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSG-KSKGFGFVSFERHED 230
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+D++N LNG+ + + + + D R G N+++KNLD
Sbjct: 231 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGV-NLYVKNLD 289
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+D++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 290 DGLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 348
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 349 PLYVALAQRKEERQA-----HLTNQYMQRMA 374
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 277/642 (43%), Positives = 377/642 (58%), Gaps = 78/642 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ PP G M P +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQ---NHAAYY---PP 419
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
+ P P + Q G RP+ F Q RPG R M+ A +P +
Sbjct: 420 SQIARLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQVPRV 470
Query: 498 QP----------------------------RMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
R +PR Y+Y G P P
Sbjct: 471 MSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQP---- 523
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
+ + A Q AS LA+A P++Q+ +LGE L+PL+ + A K+
Sbjct: 524 -------QVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TGMLLE+D +E+L++LESPE+L++KV EA+ VL+ ++AT
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 618
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 285/629 (45%), Positives = 371/629 (58%), Gaps = 80/629 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G S+GYGFV F+ EE+A +IDK+NGMLLN K
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK------------------------ 167
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
KN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A ++V LN
Sbjct: 168 ---KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 224
Query: 281 GKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
GK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDDSI+D++L+
Sbjct: 225 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLR 284
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FGTITS KVM + +G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALAQR
Sbjct: 285 REFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQR 343
Query: 400 KEERRARLQFSQMRPPVGPRM----PMYPP------VAPGLGQ-QLFYG-------QGPP 441
KE+R+A L M+ RM M+PP P + Q Q FYG + P
Sbjct: 344 KEDRKAHLASQYMQRLANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIRATP 403
Query: 442 IIPPQP------------GFGYQQQLVPGMRPNYFVPMVQPGQQ----NQRP--GGRRSG 483
P QP GF Q R P Q G + RP G + G
Sbjct: 404 RWPAQPNQVRPNAQTGNSGFATMQG---PFRTTPRAPTAQAGTMRSTLSARPITGQQAVG 460
Query: 484 TGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDA 543
MQ P + R Y+Y P +A +P P P + A
Sbjct: 461 GANMQSRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAMA------IPAP-----TPVQQA 509
Query: 544 AFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLH 603
Q Q AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH
Sbjct: 510 VHIQG-QEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLH 568
Query: 604 LLESPEALKAKVAEAMEVLRNVAQQQATG 632
+LE E+LKAKV EA+ VL+ +QA
Sbjct: 569 MLEHNESLKAKVEEAVAVLQAHQAKQAVA 597
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 277/642 (43%), Positives = 377/642 (58%), Gaps = 78/642 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ PP G M P +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQ---NHAAYY---PP 419
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
+ P P + Q G RP+ F Q RPG R M+ A +P +
Sbjct: 420 SQIARLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQVPRV 470
Query: 498 QP----------------------------RMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
R +PR Y+Y G P P
Sbjct: 471 MSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQP---- 523
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
+ + A Q AS LA+A P++Q+ +LGE L+PL+ + A K+
Sbjct: 524 -------QVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TGMLLE+D +E+L++LESPE+L++KV EA+ VL+ ++AT
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 618
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 288/699 (41%), Positives = 387/699 (55%), Gaps = 141/699 (20%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +A
Sbjct: 66 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKA 125
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + GKP RIM+S RDP +RK+G GNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 126 LEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSC 185
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVATD G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 186 KVATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMK 245
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ NVY+KN++ TE++ ++ F ++G ITS+ + RDA+GK + FGFVN+ AA+
Sbjct: 246 ANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKC 305
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE +NGK++ +E YVG+AQKK+ERE EL+ +E + E +K++G+NLY+KNL D + D
Sbjct: 306 VEEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDD 365
Query: 336 DKLKELFSEFGTITSCKVMRDPN------------------------------------- 358
+KL+ +F+EFG ITS KVMRD
Sbjct: 366 EKLRAMFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKK 425
Query: 359 -----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS--- 410
G S+G GFV F+ ++A+KA+ EMN +MV KPLYVALAQRKE R+++L+ S
Sbjct: 426 PERKLGKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLEASIQA 485
Query: 411 -------QMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY---QQQL----V 456
Q G M PPV + GQ P +PP G G Q L V
Sbjct: 486 RNQLRMQQQAAQAGLPQYMQPPV-------YYPGQQPGFLPPAAGRGMPFPQGALGMPPV 538
Query: 457 PGMRPNYFVPMVQ-------PGQQNQRPGGRRSGTGPMQQAQQ----------------- 492
G RP F P Q P Q P G+ G P Q
Sbjct: 539 QGGRPGQFPPYPQQAGRGTIPPQVPMYPIGQFPGAYPQPNNPQFLAAMQQVQQAAALAGG 598
Query: 493 ------------PIP--LMQPRML---PRGR-------------IYRYPPGCNIPDVPVA 522
PIP + P + P GR +P G P
Sbjct: 599 RGAPAGRGVPTVPIPQGIQAPGLAGYPPNGRPQNGNLGRGAGPNRSNFPAGRGAPPAGPL 658
Query: 523 GVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLE 582
GVPG + P AA Q + A +P+QQ+ +LGENL+P V L+
Sbjct: 659 GVPGELSP------------AALLQ-------SQLAATTNPQQQKQILGENLFPKVQALQ 699
Query: 583 HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
+ A K+TGMLLEMD E+++L+E AL AKV EAM V
Sbjct: 700 PELAGKITGMLLEMDNQELINLIEDEAALVAKVNEAMAV 738
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 281/620 (45%), Positives = 387/620 (62%), Gaps = 41/620 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+L V+D QL D F++ + SVRVCRD ST RSL YGYVN+ + +A RA+
Sbjct: 12 TASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIRAI 71
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ N TPLNGK +R+M+S+RDP R++G GN+++KNL +SIDN L + F FG +LSCK
Sbjct: 72 ETKNHTPLNGKLMRVMWSHRDPDARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCK 131
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VAT G+S+G+GFVQF++E+SA SAI+KLNG ++ DKQ++VG F++K +R + ++
Sbjct: 132 VATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPSPDAKY 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL TE+ L++ F EFG I S A+ RD G S+ FGFVNF++PDDA ++E
Sbjct: 192 TNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMER 251
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + K YVG+AQK+ ERE L+ +FE+ KE KF+G N+YVKN+DD ++D++L
Sbjct: 252 MNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEEL 311
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+E FS+ GTITS K+M+D G S+G GFV FS++EEASKA+ +G M KPLYVA+AQ
Sbjct: 312 REHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQ 371
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQ-QQLVP 457
RKEER+A+LQ + G P PV PG L+Y P + P+PG YQ + P
Sbjct: 372 RKEERQAQLQLQYAQRIAGFHGPS-TPVIPGGYTPLYY-TAPSQVHPRPGMMYQPLAMRP 429
Query: 458 GMRPNYFVP-----------MVQPGQQNQRPGGRRSGTGP------------MQQAQQPI 494
G R N F P V P Q Q GR G +QQ QP+
Sbjct: 430 GWRGNGFAPPSRPVFQPSHLPVMPISQRQHKQGRVRMNGHVLPQGGTQSVSYVQQPAQPL 489
Query: 495 PLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA- 553
++ R +Y P DV G + P G P+ G+
Sbjct: 490 TSLKDPSNQRAGQAKYVPNGRTCDVSKGS--GVLSAAPNSTG-----------PVSQGSE 536
Query: 554 -LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
L+S LA ASP++Q+ +LGE LYPLV + + D AK+TGMLLEMD +E+L LLESPE+L
Sbjct: 537 VLSSMLAAASPDEQKQILGEQLYPLVRKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 596
Query: 613 AKVAEAMEVLRNVAQQQATG 632
AKV EA++VL+ + + +G
Sbjct: 597 AKVEEAVQVLKISNKTKVSG 616
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 162/289 (56%), Gaps = 27/289 (9%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ ++YV +L S+++ L +LF + G V+S +V +S G+G+V + +
Sbjct: 94 DARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVA-TFEDGKSKGHGFVQFESED 152
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA---------GNIFIKNLDKSIDNKA 143
A A+++LN + + K I Y ++KS N+++KNLD I +
Sbjct: 153 SANSAIEKLNGSIVGDKQI-----YVGKFVKKSDRVLPSPDAKYTNLYVKNLDPGITEEL 207
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS FG I+S +A D G SRG+GFV F+N + A+ A++++NG L K ++VG
Sbjct: 208 LQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRA 267
Query: 204 LRKQERESTADK----------TRF--NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
++ ERE + T+F +NVYVKN+ + T+++L++ F + G ITS +M
Sbjct: 268 QKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKLM 327
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+D G+SK FGFV F ++A+++V +G F K YV AQ+K ER
Sbjct: 328 KDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQRKEER 376
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 102/198 (51%), Gaps = 25/198 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDP 269
ST T ++YV L ++ L F EF + S V RD+ G+S C+G+VNF P
Sbjct: 5 STISATATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISP 64
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETAD---KFEGL-NLY 325
+DA R++E N L GK + + D + G+ N+Y
Sbjct: 65 EDAIRAIETKN--------------------HTPLNGKLMRVMWSHRDPDARRNGIGNVY 104
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
VKNL +SI + L+ELF EFGT+ SCKV +G S+G GFV F + + A+ A+ ++NG
Sbjct: 105 VKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGS 164
Query: 386 MVVSKPLYVALAQRKEER 403
+V K +YV +K +R
Sbjct: 165 IVGDKQIYVGKFVKKSDR 182
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 278/639 (43%), Positives = 392/639 (61%), Gaps = 55/639 (8%)
Query: 7 QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
Q AP A ++ +PA++ ++ G++ S SLYVG+L+ SVN++ LY++F+ +GQV
Sbjct: 20 QAAAPDAAPSESTPASSETEDS--QGESVAVTSASLYVGELNPSVNEAVLYEIFSPLGQV 77
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD T++SLGY YVNY+ + RAL++LN++ ++G+P RIM+S RDP++R++G
Sbjct: 78 SSIRVCRDAVTKKSLGYAYVNYHKHEDGERALEQLNYSLIDGRPCRIMWSQRDPSLRRNG 137
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GNIFIKNL IDNKALHDTFS FG ILSCKVATD G+S+ +GFV ++ E+A +AI+
Sbjct: 138 DGNIFIKNLHPDIDNKALHDTFSAFGRILSCKVATDEHGRSKCFGFVHYETAEAADAAIE 197
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGM LND++VFVG + K++R + + K F NV+VKN TE +L +F +G
Sbjct: 198 NVNGMSLNDREVFVGKHISKKDRVAKFEEMKANFTNVFVKNFGSDFTEAELAAMFEPYGK 257
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS +D++GKSK FGF+NF++ D A ++VE LN K+ + ++ YVG+AQKK ER EL
Sbjct: 258 ITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELNDKEVNGQKIYVGRAQKKRERIEEL 317
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K ++E + E K++G+NL+VKNLDDS++ + L+E F FGTITS KVM D G S+G
Sbjct: 318 KKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVDETGKSKGF 377
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL-QFSQMRPPVGPRMPMY 423
GFV FS EEA+KA+TEMN +MV+ KPLYVALAQRK+ RR++L Q Q R +M M
Sbjct: 378 GFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQRKDVRRSQLEQQIQAR----NQMRMQ 433
Query: 424 PPVAPGLGQQ----LFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQ-PGQQNQRPG 478
A G+ Q +FYGQ P PG G PG P +P Q P Q Q P
Sbjct: 434 NAAAAGIPGQFMPPMFYGQQPGFF---PGNGRNNGPFPGPNPQMMMPRGQMPPPQGQWPR 490
Query: 479 GRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGM 538
+G QP+P +Y PP N + P G P + G
Sbjct: 491 AGPNG--------QPVP-----------VYGMPPVYNDFNGPNGRQQRGYFPNNRNQKGG 531
Query: 539 PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLL 594
RD LA+ +A+A P+QQ+ +LGE LYP + E + A K+TGM+L
Sbjct: 532 R-RD-----------LAAIIASAPPDQQKRILGEELYPKIVSTGKAQEPEAAGKITGMML 579
Query: 595 EMDQTEVLHLLESPEALKAKVAEAM---EVLRNVAQQQA 630
++D E+L LLE E +A+ E + +++QA
Sbjct: 580 DLDNQEILALLEDDELFNNHFEDALTAYEEYKKSSEEQA 618
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 277/642 (43%), Positives = 377/642 (58%), Gaps = 78/642 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ PP G M V +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTA---VTQTQNHAAYY---PP 419
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
+ P P + Q G RP+ F Q RPG R M+ A +P +
Sbjct: 420 SQIARLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQVPRV 470
Query: 498 QP----------------------------RMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
R +PR Y+Y G P P
Sbjct: 471 MSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQP---- 523
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
+ + A Q AS LA+A P++Q+ +LGE L+PL+ + A K+
Sbjct: 524 -------QVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TGMLLE+D +E+L++LESPE+L++KV EA+ VL+ ++AT
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 618
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 276/642 (42%), Positives = 377/642 (58%), Gaps = 78/642 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S +M D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ PP G M P +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQ---NHAAYY---PP 419
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
+ P P + Q G RP+ F Q RPG R M+ A +P +
Sbjct: 420 SQIARLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQVPRV 470
Query: 498 QP----------------------------RMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
R +PR Y+Y G P P
Sbjct: 471 MSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQP---- 523
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
+ + A Q AS LA+A P++Q+ +LGE L+PL+ + A K+
Sbjct: 524 -------QVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TGMLLE+D +E+L++LESPE+L++KV EA+ VL+ ++AT
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 618
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 276/643 (42%), Positives = 377/643 (58%), Gaps = 80/643 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ PP G M P +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQ---NHAAYY---PP 419
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
+ P P + Q G RP+ F Q RPG R M+ A +
Sbjct: 420 SQIARLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQV--- 467
Query: 498 QPRMLPRGRI-----------------------------YRYPPGCNIPDVPVAGVPGGM 528
PR++ R+ Y+Y G P P
Sbjct: 468 -PRVMSTQRVANTSTQTVGPRPAAARAAAATPAVRTVPRYKYAAGVRNPQQHRNAQP--- 523
Query: 529 LPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAK 588
+ + A Q AS LA+A P++Q+ +LGE L+PL+ + A K
Sbjct: 524 --------QVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGK 575
Query: 589 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
+TGMLLE+D +E+L++LESPE+L++KV EA+ VL+ ++AT
Sbjct: 576 ITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 618
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 275/632 (43%), Positives = 380/632 (60%), Gaps = 63/632 (9%)
Query: 9 QAPVAVAAQPSPATNGIANNGGVGDARQFVST--SLYVGDLDLSVNDSQLYDLFNQMGQV 66
++P + +PAT+ A + Q T SLYVG+LD +V +S LY+ F+ +G V
Sbjct: 19 ESPATAVTEETPATSTEAAEESNESSTQASETLASLYVGELDPTVTESDLYEFFSPIGSV 78
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD T+RSLGYGYVN+++ RAL+ELN+ + G R+M+S RDP++R+SG
Sbjct: 79 NSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEELNYAEIKGVRCRLMWSQRDPSLRRSG 138
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
+GNIFIKNLD +I+NK LHDTFS+FG +LSCKVATD G S+G+GFV ++++E+A++AI+
Sbjct: 139 SGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIE 198
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADK--TRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGMLLN ++++VGP L K++RES + + NV+VKN +TED+L+++F +G
Sbjct: 199 NINGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGP 258
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS + D++G +K FGFVNF + DDA ++VEALN K++ K YVG+AQKK ER EL
Sbjct: 259 ITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERVHEL 318
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K+E E K++ +NL++KNLD+SI D +L+E F FGTITS KVM D NG SRG
Sbjct: 319 TKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKSRGF 378
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL-QFSQMRPPVGPRMPMY 423
GFV ST EEA+KA++EMN +MV +KPLYVALAQ K RR++L Q Q R +M M
Sbjct: 379 GFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPKAIRRSQLAQQIQAR----NQMRMQ 434
Query: 424 PPVAPGLGQQ----LFYGQGPPIIPP---QPGFGYQQQLVPGMRPNYFVPMVQPGQQNQR 476
PG+ Q +FYGQ P ++PP P G Q GM R
Sbjct: 435 QQAGPGIPNQFVQPIFYGQQPGMLPPGARVPPMGNQIPQFAGM---------------PR 479
Query: 477 PGGRRSGTGPMQQAQQPIPLMQ-PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDI 535
PG P P Q PRM P G+ +PV G P GP
Sbjct: 480 PG--------------PFPQGQFPRMAPNGQ-----------PMPVYGQPVFNGNGPQQR 514
Query: 536 GGMPFRDAAFSQPM--QTGALASALANASPEQQRTLLGENLYPLV----DQLEHDNAAKV 589
G P ++ + +LA+ L EQQ+ +LGE LYP V + + A K+
Sbjct: 515 GYYPNNRQNKNRNQKEEGNSLAAILPQLPLEQQKRVLGEELYPKVVATNKTQDPEAAGKI 574
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
TGM+L++D E+L LLE E EA++
Sbjct: 575 TGMILDLDNQEILQLLEDEELFNTHFNEALQA 606
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 292/695 (42%), Positives = 392/695 (56%), Gaps = 111/695 (15%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 60 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKA 119
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 120 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 179
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 180 KVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 239
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN+ T+++ +++F +FG +TS ++ RD D GKS+ FGFVNF + + AA
Sbjct: 240 ANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAAT 299
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLYVKNLDD +
Sbjct: 300 AVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVD 359
Query: 335 DDKLKELFSEFGTITSCKVMRDPN------------------------------------ 358
D+KL+ELF+ FG ITS KVMRD
Sbjct: 360 DEKLRELFTPFGAITSAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEGEKADGEKKEA 419
Query: 359 --------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
G S+G GFV FS +EA+KA+ +MN MV KPLYVALAQRK+ R+ +L+ S
Sbjct: 420 PKSEKRTVGKSKGFGFVCFSNPDEATKAIADMNQNMVNGKPLYVALAQRKDVRKGQLEAS 479
Query: 411 -----QMR----------PPVGPRMPM-YPP-VAPGL-----GQQLFY------------ 436
Q+R PP + PM YPP PG G+ + Y
Sbjct: 480 IQARNQIRMQQAAAQAGMPPQYMQAPMFYPPGQQPGFMPAAGGRGMPYPPQAGMPMPAQG 539
Query: 437 ---GQGPPIIPPQPGFGYQQQLVPGMR--PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQ 491
Q P PPQ G G QQ+ P M P F P P Q N + Q
Sbjct: 540 GRPAQFPGGFPPQGGRGGPQQMPPNMYGIPGQFPPGQFPQQNNPQYIAAMQQAAHAASLQ 599
Query: 492 ------------QPIPLMQPRM--LPRGRI-YRYPPGCNIPDVPVAGVP----GGMLPG- 531
Q +P M P M LP G+ + P P G PG
Sbjct: 600 AGGGRGGPARPMQGMPGMPPNMAGLPGGQQGMQGVPQGGRQGGMGGRAPQNARAGQFPGG 659
Query: 532 --PYDIGGMPFRDAAFSQPMQTGA---LASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
P + GMP + Q G L + LA A P QQ+ +LGE L+P + ++ + A
Sbjct: 660 FPPQNARGMPPQGPGMPQAGSEGGASVLQAQLAAAGPGQQKQVLGEALFPKIQAMQPELA 719
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
K+TGMLLEM+ E+++L+E AL+ KV EA+ V
Sbjct: 720 GKITGMLLEMENPELVNLIEDESALRNKVDEALTV 754
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/629 (44%), Positives = 386/629 (61%), Gaps = 58/629 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGAKAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR---- 274
NVY+KN + +D L++IF +FG S VM D+ G+SK FGFVNF+ ++A +
Sbjct: 191 TNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEEAQKARGS 250
Query: 275 ------------SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
+V +NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+
Sbjct: 251 SCCAQRPPLRWQAVADMNGKEINGRIVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGV 310
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
NLYVKNLDD I DD+L++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEM
Sbjct: 311 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEM 369
Query: 383 NGKMVVSKPLYVALAQRKEERRARL------QFSQMRPPVGPRM------PMY--PPVAP 428
NG++V +KPLYVALAQRKEER+A L + + +R GP + P Y PP+
Sbjct: 370 NGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATLRALPGPLLGSFQPPPGYFLPPIPQ 429
Query: 429 GLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQ 488
+ FY P++P +P + Q P P P+++ +R + M+
Sbjct: 430 PQTRATFYSPS-PVVPVRPATRWSAQ--PSRPPP--TPILRAAVPPRR---LLTNISTMR 481
Query: 489 QAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD--------IGGMP- 539
QA +P + P+ I +P P +P G Y +G MP
Sbjct: 482 QASTQVPRVPPQAQRVANIGTQTVSARVPSSPT--LPRGTPQYKYSSSVRNVQPMGHMPP 539
Query: 540 -----FRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
+ A Q AS LA A P++Q+ ++GE LYPL+ + A K+TGMLL
Sbjct: 540 VVAPQVGEPAVHVQGQEPLTASVLAAAPPQEQKQMIGERLYPLIYAIHPSLAGKITGMLL 599
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+L LLESP++L++K+ EA+ VL+
Sbjct: 600 EIDNSELLLLLESPDSLRSKMEEAVAVLQ 628
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 306 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 363
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 364 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 402
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 272/623 (43%), Positives = 382/623 (61%), Gaps = 39/623 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD+ TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++R+SG GN+FIKNL+K+IDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+G+GFV F+ EE+A+ AI+K+NGMLLND++VFVG F ++ERE+ +T+ F
Sbjct: 132 CDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + + L +FG FG + S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG AQKK +R +ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA++EMNG++V +KPLYVALAQ
Sbjct: 311 QKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARL--QFSQMRPPV--GPR--MPMYPPVAPGLG-------QQLFYGQGPPIIPP 445
RKEER+A L Q+ Q V GP + Y P G Q I+ P
Sbjct: 370 RKEERQAHLTNQYIQRMASVRSGPNSLINAYQPAPSGYSVAAVPQTQNCAPCCPSQIVQP 429
Query: 446 QPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP-LMQPRMLP- 503
P + Q G RP+ F P V P +S ++ + +P +M + +
Sbjct: 430 SPSTRWTAQ---GARPHPF-PNVSGASH---PAAPKSSFTTVRPSSSHVPQVMAAQRITN 482
Query: 504 --------RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALA 555
R + P + +P G+ + + + Q A
Sbjct: 483 TSAQTTGQRPALASSPATTPVRSIPQYKYATGVRNSQQHLNAQLVQQPSVCIQGQEPWTA 542
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S L A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E LH+L+SPE+L ++
Sbjct: 543 STLGTA-PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHMLDSPESLCSRA 601
Query: 616 AEAMEVLR----NVAQQQATGPS 634
EA+ L+ N A Q+A G +
Sbjct: 602 QEAVSALQAHQANEAAQKAAGST 624
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 25/205 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D L LF + GQV+SV+V D +S G+G+V++ +A +A+D
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVD 249
Query: 100 ELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNK 142
E+N LNGK I + + + D IR G N+++KNLD ID++
Sbjct: 250 EMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGI-NLYVKNLDDGIDDE 308
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS FG I S KV T+ G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 309 RLQKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVAL 367
Query: 203 FLRKQERESTADKTRFNNVYVKNLS 227
RK+ER++ N Y++ ++
Sbjct: 368 AQRKEERQA-----HLTNQYIQRMA 387
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 290 RYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R R++ N +I+ +
Sbjct: 348 KAVSEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYIQRM 386
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 276/611 (45%), Positives = 386/611 (63%), Gaps = 62/611 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN++ L++ F++ G V+S+RVCRDL T+RSLGY YVN+ +A RALD
Sbjct: 16 SLYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALDT 75
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ P+ G+P RIM+S RDP++R+SG GNIFIKNLDKSID+KAL+DTFS FGNILSCKVA
Sbjct: 76 MNYEPIKGQPCRIMWSQRDPSLRRSGVGNIFIKNLDKSIDHKALYDTFSAFGNILSCKVA 135
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRFN 219
TD S+G+GFV FD +E+A AI+K+NG LLND +V+VG F+ +++R T +
Sbjct: 136 TDGNRHSKGFGFVHFDEQEAADLAIEKVNGKLLNDMKVYVGKFIPRKDRSHTNGFNQHYT 195
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NV++KN E T+ L +F ++G I S VM+D +G SK FGFV+F+ + A+ +V+A+
Sbjct: 196 NVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAV 255
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ + ++ Y G+AQKK ER EL + E+ +E +++G+NLY+KNL+D++ ++KLK
Sbjct: 256 HNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEKLK 315
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
FS+FG+ITS K+M D G S+G GFV FS+ EEA+KA+TEMNG++VVSKPLYVALAQR
Sbjct: 316 SEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQR 375
Query: 400 KEERRARLQFSQMRP-----PVGPRMPMYPP-VAPGL-GQQLFY-----------GQGPP 441
KEER+A L +M+ P G +M MYPP PG+ Q+ F+ QG P
Sbjct: 376 KEERQAHLAAQRMQRIARGIPQG-QMQMYPPYYMPGIQNQRPFFTAMAAGYTARPWQGGP 434
Query: 442 IIPPQPGFGYQQQL-----VPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL 496
+ P G GY VP RP+ GQ+ P Q Q+ P
Sbjct: 435 MHRPFSG-GYNMHHRTRANVP--RPSVGGAGGAGGQRMNTP-----------QTQRIAP- 479
Query: 497 MQPRMLPRGRIYRYPPGCNIPDVPV-AGVPG---GMLPGPYDIGGMPFRDAAFSQPMQTG 552
Q R+ P+GR P G + AG G + G D+G P +P+ T
Sbjct: 480 -QQRLNPQGR----PGGVQQTKLQFSAGARNQPGGPMGGGMDLGQDP-------EPLST- 526
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
L+ P +++ ++GE+LY + D A K+TGMLLEMD +E+LH+LE+PE+L
Sbjct: 527 -----LSQTDPMKRKQIIGEHLYRAISASHPDKAGKITGMLLEMDNSELLHMLEAPESLN 581
Query: 613 AKVAEAMEVLR 623
+KV EA+ VLR
Sbjct: 582 SKVEEAVNVLR 592
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 102/198 (51%), Gaps = 17/198 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++++ + D+ LYD+F + G +VS V +D S G+G+V++ + A+ A+
Sbjct: 195 TNVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKD-GEGLSKGFGFVSFESHEAASAAVQ 253
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
++ + +NG+ + R R + + N++IKNL+ ++ +
Sbjct: 254 AVHNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEK 313
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L FS FG+I S K+ TD G S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 314 LKSEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALA 373
Query: 204 LRKQERESTADKTRFNNV 221
RK+ER++ R +
Sbjct: 374 QRKEERQAHLAAQRMQRI 391
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 299/721 (41%), Positives = 404/721 (56%), Gaps = 139/721 (19%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 179 KVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN+ TE++ +++F +FG +TS ++ RD + GKS+ FGFVNF + + AA
Sbjct: 239 ANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAAT 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLYVKNLDD I
Sbjct: 299 AVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLDDEID 358
Query: 335 DDKLKELFSEFGTITSCKVMRD-------------------------------------- 356
D+KL+ELF+ FG ITS KVMRD
Sbjct: 359 DEKLRELFAPFGAITSAKVMRDTPAETADAEDKKEKDEEKNKENKKEGEAETEEASAPKA 418
Query: 357 --PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMR 413
P G S+G GFV F+ +EA+KA+++MN +MV +KPLYVALAQRK+ R+++L+ S Q R
Sbjct: 419 KRPLGKSKGFGFVCFNNPDEATKAVSDMNQRMVSNKPLYVALAQRKDVRKSQLEASIQAR 478
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP---QPGFGYQQQLVPGMRPNYFVP---M 467
+ RM A G+ QQ Y Q P PP QPGF L G R F P M
Sbjct: 479 NQI--RMQQAAAQA-GMPQQ--YMQAPMFFPPGAQQPGF-----LPQGGRGMQFPPQAGM 528
Query: 468 VQPGQQNQRPGGRRSGTGPMQQ-----AQQPIPL----MQPRMLPRGRIYRYPPGCNIPD 518
PG Q RPG ++G P Q A Q +P M P P G Y P N P
Sbjct: 529 PIPGAQAGRPGQFQAGFPPQQAGRGAPAGQQMPPNMYGMGPGQFPAGGQY---PQQNNPQ 585
Query: 519 V-----------------------PVAGVPGGM-LP-GPYDI---------GGMPFRDAA 544
P+ G+P M +P G + GGMP R A
Sbjct: 586 FLAAMQAAQAAQLSAGRGGPNARGPMQGMPPNMAMPMGQQGMPQFQQGARQGGMPGRGAQ 645
Query: 545 FSQPMQ-TGALASALANASPEQ--------------------------------QRTLLG 571
+P Q G P+Q Q+ +LG
Sbjct: 646 AGRPGQFAGGFPPQAGRGMPQQIPGMPQMPQMPQEGGVPTTLLQAQVQSVPPQQQKQILG 705
Query: 572 ENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
E L+P + L+ + A K+TGMLLEM+ E+++L+E +L+AKV EA+ V + +
Sbjct: 706 EALFPKIQVLQPELAGKITGMLLEMENQELINLIEDDASLRAKVDEALTVYDEYVKNRGE 765
Query: 632 G 632
G
Sbjct: 766 G 766
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 274/595 (46%), Positives = 373/595 (62%), Gaps = 45/595 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ LYD F G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++R+SG GN+FIKNLD+SIDNKAL+DTFS+FGNILSCKV
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVV 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
D G S+G+GFV ++++ESA+ AI+K+NGML+ DK+VFV F + +R E F
Sbjct: 123 CDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVE 277
N++VKNL ++ D L K F +FG + S V+ D G SKC GF++F + D A +VE
Sbjct: 182 TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVE 241
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
++ K+ + K+ Y G+AQKK ER ELK K+E+ +E +++G+NLYVKNLDDSI D+
Sbjct: 242 IMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEG 301
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E F +FG ITS KV+ D NG S+G GFV FS+ EEA+KA+TEMNG++ KPLYV LA
Sbjct: 302 LREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLA 361
Query: 398 QRKEERRARLQFSQM-RPPVGPRMPMYPPVAPGLGQQLFYGQGPP---IIPPQPGFGYQQ 453
QRKE+R+A LQ M R G RM + +G Q+ P I+P G Q
Sbjct: 362 QRKEDRKAHLQQQYMQRVSTGIRMQAF------MGNQVVNQNFQPPRYILPTMQGQPVQM 415
Query: 454 --QLVPGMRPN-YFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRY 510
Q P +R + P P Q+ Q PG R + AQQ P Q R+ P R
Sbjct: 416 FPQGTPMVRATPRWAP---PNQRVQMPGMVRG-----RMAQQGGP--QFRLTPSVR---- 461
Query: 511 PPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLL 570
IP + P MP ++ +S LANA+P++Q+ +L
Sbjct: 462 --NVQIPSEVIQMPP-----------QMPHQNQPAGDQAPETLTSSMLANANPQEQKQML 508
Query: 571 GENLYPLVDQL-EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRN 624
GE L+PL+ + D A K+TGMLLE+D +E+LH+L++ E LK+KV EA+ VL++
Sbjct: 509 GERLFPLIQSMAATDLAGKITGMLLEIDNSELLHMLDNRELLKSKVDEAVLVLKH 563
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 107/196 (54%), Gaps = 17/196 (8%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
GDA + T+L+V +L S + L F Q G+VVS +V D +T S +G++++
Sbjct: 175 GDAAKHF-TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEH 233
Query: 92 HEATRALDELNFTPLNGKP---------------IRIMYS-YRDPTIRKSGAGNIFIKNL 135
+A A++ ++ + GK ++ Y + I++ N+++KNL
Sbjct: 234 DQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNL 293
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D SID++ L + F FGNI S KV TD G+S+G+GFV F + E A A+ ++NG +
Sbjct: 294 DDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGG 353
Query: 196 KQVFVGPFLRKQERES 211
K ++VG RK++R++
Sbjct: 354 KPLYVGLAQRKEDRKA 369
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 253/349 (72%), Positives = 298/349 (85%), Gaps = 15/349 (4%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTE 232
+ D EE+A +AI+KLNGMLLNDK+VFVGPFLRKQ+RE+TA+ T+FNNV+VKNLSE+TTE
Sbjct: 1 IYVDPEEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTE 60
Query: 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
D+L +IFGE+G ITS VMR+ DGKSKCFGFVNF+DP+ AA++V+ LNGKKFD KEWYVG
Sbjct: 61 DNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVG 120
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
KAQKK EREMELKG+FEQ ++E ADK +G NLY+KNLDDSI DDKL+ELFSEFG+ITSCK
Sbjct: 121 KAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCK 180
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFS 410
VMRDPNG+SRGSGFVAF + ++ASKAL EMNGKM+ SKPLYVALAQRKE+RRARL QFS
Sbjct: 181 VMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFS 240
Query: 411 QMR-----PPVGPRMPMYPPVAPGLGQQLFYGQ-GPPIIPPQPGFGYQQQLVPGMR---- 460
QMR P V PR+PMYP APG+GQQLFYGQ P +IPPQPGFG+QQ LVPGMR
Sbjct: 241 QMRPVAIPPSVAPRVPMYPAGAPGMGQQLFYGQPPPTLIPPQPGFGFQQPLVPGMRPGVA 300
Query: 461 --PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQ-PIPLMQPRMLPRGR 506
PN+++P+VQ GQQ QRPGGRR+G GPMQQ QQ P+PL+Q +MLP GR
Sbjct: 301 AMPNFYMPLVQQGQQAQRPGGRRAGGGPMQQTQQHPMPLIQQQMLPLGR 349
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 131/237 (55%), Gaps = 19/237 (8%)
Query: 90 AAHEATRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
AAH A +++LN LN K + + R+ T + N+F+KNL +S L
Sbjct: 8 AAHNA---IEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTEDNLL 64
Query: 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205
+ F +GNI S V + G+S+ +GFV F++ E A A+ +LNG + K+ +VG +
Sbjct: 65 EIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVGKAQK 124
Query: 206 KQERE------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K ERE ADK + N+Y+KNL ++ +D L+++F EFG ITS VMRD
Sbjct: 125 KSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCKVMRD 184
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+G S+ GFV F PDDA++++ +NGK K YV AQ+K +R L+ +F Q
Sbjct: 185 PNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFSQ 241
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 17/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+++V +L S + L ++F + G + S V R+ +S +G+VN+ A +A+
Sbjct: 47 NNVFVKNLSESTTEDNLLEIFGEYGNITSAVVMRE-GDGKSKCFGFVNFEDPEHAAKAVK 105
Query: 100 ELNFTPLNGKPIRI----MYSYRDPTIR------------KSGAGNIFIKNLDKSIDNKA 143
ELN +GK + S R+ ++ K+ N+++KNLD SI +
Sbjct: 106 ELNGKKFDGKEWYVGKAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDK 165
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS FG+I SCKV D G SRG GFV F + + A A+ ++NG ++ K ++V
Sbjct: 166 LRELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALA 225
Query: 204 LRKQERES 211
RK++R +
Sbjct: 226 QRKEDRRA 233
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 294/676 (43%), Positives = 384/676 (56%), Gaps = 95/676 (14%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY------------ 88
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVNVVT 71
Query: 89 -------------------------------NAAHEATRALDELNFTPLNGKPIRIMYSY 117
++ A RALD +NF + G+PIRIM+S
Sbjct: 72 QRGFTRMAACVPHTCLANVPTIVPTMLDPRPHSTVNAERALDTMNFDMIKGRPIRIMWSQ 131
Query: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDN 177
RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA D G S+GYGFV F+
Sbjct: 132 RDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFET 191
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-FNNVYVKNLSETTTEDDL 235
EE+A +IDK+NGMLLN K+V+VG F+ ++ERE +K + F NVYVKN E TED L
Sbjct: 192 EEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTEDKL 251
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKA 294
K +F ++G ITS VM DGKS+ FGFV F+DPD A ++V LNGK+ + K YVG+A
Sbjct: 252 KDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGRA 311
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
QKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D++L++ F+ FGTITS KVM
Sbjct: 312 QKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVM 371
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRP 414
+ G S+G GFV FS EEA+KA+TEMNG++V SKPLYVALAQRKE+R+A L M+
Sbjct: 372 ME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQR 430
Query: 415 PVGPRM-PMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQQQLVPGMRPNYFVPMVQPGQ 472
RM M P F P +P PQ +G Q P + P Q
Sbjct: 431 MANVRMQQMGQIFQPSNAGSYFV----PTLPQPQRFYGPAQMAQIRATPRW------PAQ 480
Query: 473 QNQ-RPGGR--RSGTGPMQQAQQPIPLMQPRMLP---RGRIYRYP-------PGCNIPDV 519
NQ RP + SG MQ A P R + P G N+
Sbjct: 481 PNQVRPNTQTGTSGFASMQAAPFRAAPRAPAAQAGALRNSMSARPITGQQAVGGANMQSR 540
Query: 520 PVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQ-------------- 565
+AG G+ PG + A P QT A + S +Q
Sbjct: 541 TMAGPAVGVSPGQSRPSNYKY-TANMRNPPQTAMAIPAPSGPSVQQAVHIQGQEPLTASM 599
Query: 566 --------QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 617
Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE E+LKAKV E
Sbjct: 600 LAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHSESLKAKVEE 659
Query: 618 AMEVLRNVAQQQATGP 633
A+ VL+ +QA P
Sbjct: 660 AVAVLQAHQAKQAVAP 675
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V + RS G+G+V ++ EAT
Sbjct: 335 RYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVM--MEEGRSKGFGFVCFSQPEEAT 392
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 393 KAVTEMNGRIVGSKPLYVALAQR 415
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/640 (43%), Positives = 380/640 (59%), Gaps = 71/640 (11%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 41 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 100
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + + RIM+S RDP +RK+G GN+FIKNLD++IDNKALHDTF FGN+LSCK
Sbjct: 101 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCK 160
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G+S+GYGFV ++ E+A +AI +NGMLLNDK+V+VG + ++ER+S D K
Sbjct: 161 VATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKA 220
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+Y+KNL T+++ ++F +G +TS+ V D +GKSK FGFVN++ ++A R+V
Sbjct: 221 QFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAV 280
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ K+ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D DD
Sbjct: 281 DELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFDDD 340
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FG ITSCKVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+L
Sbjct: 341 KLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 400
Query: 397 AQRKEERRARLQFSQMRPPVGPRM---------------PMY----PPVAPGLGQQLFYG 437
AQR+E RR +L+ SQ+ RM PMY P P + YG
Sbjct: 401 AQRREVRRQQLE-SQIAQRNQIRMQQAAAAGVPGGYINGPMYYPPGPGFPPQGRGMMGYG 459
Query: 438 QGPPIIPPQPGFGYQQQLVPGMRP----------NYFVPMVQPGQQNQRPGGRRSGTG-- 485
Q P ++PP+ Y VP M P Y +P P + P R G+
Sbjct: 460 Q-PGMMPPR--IRYPNGQVPSMPPVPGPYGQGPQPYGMPGYPPRGAPRPPVARGPGSSPT 516
Query: 486 ----PMQQAQQPIP-----LMQPRMLPRGRIYRYP----------PGCNIPDVPVAGVPG 526
PM +A P P P+ P G P P N P G P
Sbjct: 517 HPSVPMPRANGPAPNGGAARPAPQGAPTGSRAPPPGAPAPGRAPQPAYNKPQARPQGAPV 576
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTG---ALASALANASPEQQRTLLGENLYPLVDQLEH 583
P AA P Q+G A LA ASP +Q+ +LGE +Y + +
Sbjct: 577 TAQP------------AAVPAPQQSGLPNLTADQLAAASPMEQKQMLGEVIYMRIVPSQP 624
Query: 584 DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ A K+TGMLLEMD E+L LL+S EA+ AKV EA VL+
Sbjct: 625 ELAGKITGMLLEMDNNELLALLDSEEAMNAKVQEANTVLQ 664
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 295/706 (41%), Positives = 391/706 (55%), Gaps = 133/706 (18%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL + ++ +++F ++G ITS ++ RD + GKS+ FGFVNF + AA +
Sbjct: 234 NFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K++ ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 294 VEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 336 DKLKELFSEFGTITSCKVMRDPNG------------------------------------ 359
+KL++LF FG ITS +VMRD G
Sbjct: 354 EKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSD 413
Query: 360 --------------ISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ + GF V FS +EASKA+TEMN +MV KPLYVALAQRK+ R
Sbjct: 414 KVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 404 RARLQFS----------QMRPPVGPRMP-MYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQ 452
+++L+ S Q+ G P M P V GQQ F P + G +
Sbjct: 474 KSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFI---PANAAQRGGMAFG 530
Query: 453 QQ---LVPGM---RPNYFVPMVQPGQQNQRPGGRRSGTGPMQQ--------AQQPIP--- 495
QQ ++PGM RP F PGQQ GGR G P QQ Q +P
Sbjct: 531 QQPGMVIPGMPGGRPGQFAAGF-PGQQ----GGR--GINPNQQLPPNAFGLGAQGLPIGA 583
Query: 496 LMQPRMLPRGRIY-----RYPPGCNIPDVPVAGVPG--GMLPGPYDIGGMPFRDAAFSQ- 547
L P LP G Y + VPG GM P ++ GM F+Q
Sbjct: 584 LQGPGGLPNGLSYPQAIAQVQASFGRGGGGRGQVPGIQGMPPNLANVPGMRAGGQGFAQG 643
Query: 548 ----PMQTGALAS----------------------------ALANASPEQQRTLLGENLY 575
P Q G + S AL+ A P QQ+ +LGE +Y
Sbjct: 644 RGIPPQQGGMVRSGQAGRGTGPGQAMPPRDESVGGPTLNLQALSAAPPAQQKQMLGEAIY 703
Query: 576 PLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
P + + + A K+TGMLLEMD E+L L++ AL+AKV EA+ V
Sbjct: 704 PKIQAQQPELAGKITGMLLEMDNAELLSLVDDDAALRAKVDEAINV 749
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 154/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 47 PSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKNLD +S+++ +ELF ++G ITS + RD
Sbjct: 223 DRQ----SKFEEM------KANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGE 272
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV F E A+ A+ E+N K + LYV AQ+K ER L+
Sbjct: 273 TGKSRGFGFVNFVKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELR 323
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 300/712 (42%), Positives = 388/712 (54%), Gaps = 146/712 (20%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL T ++ +++FG++G ITS ++ D++ GKS+ FGFVNF + AA +
Sbjct: 234 NFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K+F ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 294 VEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 336 DKLKELFSEFGTITSC-------------------------------------------- 351
+KL++LF FG ITS
Sbjct: 354 EKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSD 413
Query: 352 --------KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
K + G S+G GFV FS +EASKA+TEMN +MV KPLYVALAQRK+ R
Sbjct: 414 KAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 404 RARLQFS----------QMRPPVGPRMP-MYPPVAPGLGQQLFYGQGPPIIPPQPG---- 448
+++L+ S Q+ G P M P V GQQ F IP G
Sbjct: 474 KSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGF-------IPTNAGQRGG 526
Query: 449 --FGYQQQLV----PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQ--------AQQPI 494
FG Q +V PG RP F PGQQ GGR G P QQ Q +
Sbjct: 527 MAFGQQPGMVLPGMPGGRPGQFAGGF-PGQQ----GGR--GINPNQQLPPNAFGMGAQGL 579
Query: 495 P---LMQPRMLPRGRIY-------------------------RYPPGC-NIPDV------ 519
P L P LP G Y PP N P +
Sbjct: 580 PMGALQGPGGLPNGLSYPQAIAQVQASFGRGGGGRGQAPGMQGMPPSMGNAPGMRAGGQA 639
Query: 520 --------PVAGV--PGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTL 569
P GV PG G GMP RD + P AL+ A P QQ+ +
Sbjct: 640 FTQGRGMPPQQGVARPGQAGRGAGPAQGMPPRDESAGGPTLN---LQALSAAPPAQQKQM 696
Query: 570 LGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
LGE +YP + + + A K+TGMLLEMD E+L L++ AL+AKV EA+ V
Sbjct: 697 LGEAIYPKIQAQQPELAGKITGMLLEMDNAELLSLVDDEAALRAKVDEAINV 748
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 153/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 47 PSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP- 357
+R+ KFE+ K N+YVKNLD +++++ +ELF ++G ITS + D
Sbjct: 223 DRQ----SKFEEM------KANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSE 272
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV F E A+ A+ E+N K + LYV AQ+K ER L+
Sbjct: 273 TGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELR 323
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 300/712 (42%), Positives = 388/712 (54%), Gaps = 146/712 (20%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL T ++ +++FG++G ITS ++ D++ GKS+ FGFVNF + AA +
Sbjct: 234 NFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K+F ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 294 VEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 336 DKLKELFSEFGTITSC-------------------------------------------- 351
+KL++LF FG ITS
Sbjct: 354 EKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSD 413
Query: 352 --------KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
K + G S+G GFV FS +EASKA+TEMN +MV KPLYVALAQRK+ R
Sbjct: 414 KAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 404 RARLQFS----------QMRPPVGPRMP-MYPPVAPGLGQQLFYGQGPPIIPPQPG---- 448
+++L+ S Q+ G P M P V GQQ F IP G
Sbjct: 474 KSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGF-------IPANAGQRGG 526
Query: 449 --FGYQQQLV----PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQ--------AQQPI 494
FG Q +V PG RP F PGQQ GGR G P QQ Q +
Sbjct: 527 MAFGQQPGMVLPGMPGGRPGQFAGGF-PGQQ----GGR--GINPNQQLPPNAFGMGAQGL 579
Query: 495 P---LMQPRMLPRGRIY-------------------------RYPPGC-NIPDV------ 519
P L P LP G Y PP N P +
Sbjct: 580 PMGALQGPGGLPNGLSYPQAIAQVQASFGRGGGGRGQAPGMQGMPPSMGNAPGMRAGGQA 639
Query: 520 --------PVAGV--PGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTL 569
P GV PG G GMP RD + P AL+ A P QQ+ +
Sbjct: 640 FTQGRGMPPQQGVARPGQAGRGAGPAQGMPPRDESAGGPTLN---LQALSAAPPAQQKQM 696
Query: 570 LGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
LGE +YP + + + A K+TGMLLEMD E+L L++ AL+AKV EA+ V
Sbjct: 697 LGEAIYPKIQAQQPELAGKITGMLLEMDNAELLSLVDDEAALRAKVDEAINV 748
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 153/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 47 PSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP- 357
+R+ KFE+ K N+YVKNLD +++++ +ELF ++G ITS + D
Sbjct: 223 DRQ----SKFEEM------KANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSE 272
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV F E A+ A+ E+N K + LYV AQ+K ER L+
Sbjct: 273 TGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELR 323
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 280/664 (42%), Positives = 390/664 (58%), Gaps = 89/664 (13%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A +A+ ++GIA N S SLYVG+L+ SVN++ L+++F+ +GQV S+RVC
Sbjct: 50 ADSAEEQGESSGIAEN----------SASLYVGELNPSVNEATLFEIFSPIGQVASIRVC 99
Query: 73 RDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFI 132
RD +++SLGY YVNY+ + +A++ELN+TP+ G+P RIM+S RDP+ R+SG GNIFI
Sbjct: 100 RDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFI 159
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNL +IDNKALHDTFS FG ILS KVATD LGQS+ +GFV ++ EE+A++AI+ +NGML
Sbjct: 160 KNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGML 219
Query: 193 LNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++V+VG + K++RES + K + N+YVKN+ TE + +++F FG ITS +
Sbjct: 220 LNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYL 279
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+DA+GKSK FGFVNF++ + AA++VE LN K+ + ++ YVG+AQKK ER ELK ++E
Sbjct: 280 EKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEA 339
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
E K++G+NL+VKNLD+ I +KL+E F FGTITS KVM D G S+G GFV FS
Sbjct: 340 VRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFS 399
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGL 430
T EEA+KA+TEMN +MV KPLYVALAQRK+ RR++L+ Q++ RM
Sbjct: 400 TPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLE-QQIQARNQMRM---------- 448
Query: 431 GQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA 490
Q G P F+P + GQQ P P +
Sbjct: 449 ---------------------QNAAAAGGLPGQFMPPMFYGQQGFFP--------PNGRG 479
Query: 491 QQPIPLMQPRMLPRGRIYRYP-----PGCNIPDVPVAGVP--------GGMLPGPYDI-- 535
P P P+M+ RGR +P PG N VPV G+P M P
Sbjct: 480 NAPFPGPNPQMMMRGRGQPFPEQWPRPGPNGQPVPVYGMPPQFQDFNGQNMRPQQQQQQQ 539
Query: 536 -----------GGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV----DQ 580
G P R A + P + LA+ +ANA E Q+ +LGE LY +
Sbjct: 540 QQQQQQQQQQRGYYPNRPAGGNVPAKD--LAALIANAPLEAQKRILGEELYQRIVATGKA 597
Query: 581 LEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ----ATG-PSP 635
E + A K+TGM+L ++ E+L LL+ E EA+ + ATG P+P
Sbjct: 598 QEPEAAGKITGMMLGLENQEILDLLDDEELFNNHFEEALNAFEEYKNSEGANAATGAPAP 657
Query: 636 TDRV 639
++
Sbjct: 658 SEEA 661
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 281/615 (45%), Positives = 384/615 (62%), Gaps = 53/615 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVN+ A + RA++
Sbjct: 47 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 106
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LN++ + +P RIM+S RDP +R++G GNIFIKNLD IDNKALHDTF+ FGNILSCKV
Sbjct: 107 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKV 166
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR-- 217
AT+ G S GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER++ +++R
Sbjct: 167 ATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAN 225
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY KN+ T+++ +K+F +G ITS + RD DGKSK FGFVNF+D ++A +V+
Sbjct: 226 FTNVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVD 285
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+ F ++ +V +AQKK ERE EL+ +E + E KF+G+NLY+KN+ +S D++
Sbjct: 286 ELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 345
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E F+ FG ITSCK+MR P+G+SRG GFV +S EEA+KA++EMNGKM+ ++PLYVALA
Sbjct: 346 LREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALA 405
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
QRK++RR +L+ M+ A G+G GP + PQPG P
Sbjct: 406 QRKDDRRQQLEAQIMQ--RNQLRLQQQAAAQGMGY-----PGPGMYYPQPG------AFP 452
Query: 458 GMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRI---YR--YPP 512
G QPG RP R + G M Q P QP P G + YR PP
Sbjct: 453 G----------QPGGMMPRP--RYAPAGMMPQGMPMAPYGQPGQFPAGMMPQGYRPARPP 500
Query: 513 -------------GCNIPDVPVAGVP---GGMLPGPYDIGGMPFRDAAFSQPMQTG---- 552
P V G P G +PG G R A Q G
Sbjct: 501 RGAPNAAGGPAPPAGARPPAGVNGAPRPAGQPVPGQPMPRGPAARPAGRPQGEAAGQPGA 560
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
A+ALA ASPE+Q+ +LGE +YP V + + A K+TGM+LE+ TE+LHLL+ EAL
Sbjct: 561 LTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLDESEALD 620
Query: 613 AKVAEAMEVLRNVAQ 627
AKV EA+EVL+ Q
Sbjct: 621 AKVNEALEVLKEYQQ 635
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 285/626 (45%), Positives = 370/626 (59%), Gaps = 74/626 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G S+GYGFV F+ EE+A +ID++NGMLLN K
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK------------------------ 167
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
KN E T+D LK +F ++G ITS VM DGKS+ FGFV F+DPD A ++V LN
Sbjct: 168 ---KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 224
Query: 281 GKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
GK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDSI D++L+
Sbjct: 225 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLR 284
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALAQR
Sbjct: 285 KEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQR 343
Query: 400 KEERRARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQQQLVP 457
KE+R+A L M+ RM M PG F P IP PQ +G Q
Sbjct: 344 KEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFV----PTIPQPQRFYGPAQMAQI 399
Query: 458 GMRPNYFVPMVQPGQQNQ-RPGGR--RSGTGPMQ---QAQQPIPLMQPRMLPRGRIYRYP 511
P + P Q NQ RP + SG MQ +A P QP + R + P
Sbjct: 400 RTTPRW------PAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGAM-RSTLSARP 452
Query: 512 -------PGCNIPDV----PVAGVPGGMLPGPYDIGG--------------MPFRDAAFS 546
G N+ + P GV P Y P + A
Sbjct: 453 ITGQQTVGGANMQNRSMAGPAVGVTAQSRPSNYKYTSNMRNPPQAMAIPAPTPVQQAVHI 512
Query: 547 QPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
Q Q AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE
Sbjct: 513 QG-QEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLE 571
Query: 607 SPEALKAKVAEAMEVLRNVAQQQATG 632
E+LKAKV EA+ VL+ +QA
Sbjct: 572 HNESLKAKVEEAVAVLQAHQAKQAVA 597
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 275/601 (45%), Positives = 372/601 (61%), Gaps = 55/601 (9%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ S SLYVGDL ++++ L+DLF+++G ++S+R+CRD TR+SLGY YVN+ +A R
Sbjct: 3 YSSASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAER 62
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+ + G PIRIM+S RDP+IRKSG GNIFIKNLDKSIDNKAL+DTFS FGNILS
Sbjct: 63 ALDTLNYASVKGIPIRIMWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNILS 122
Query: 157 CKVAT-----DSLG---QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
CKV D+ G +S GYGFV F+ +E+A+ AI K+NGMLLN KQVFVGPF++K E
Sbjct: 123 CKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVKKTE 182
Query: 209 R-ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
R + +++ F N+YVKNL + E +L ++F +FG I + VMR +G SK FGF+NF
Sbjct: 183 RLKILSNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFINFA 242
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
D A +++ +N K F +K+ +VG+AQKK ER +LK F++ +E +K++GLNLYVK
Sbjct: 243 DHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVK 302
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDDS+ D++L++ FS+FG ITS KVM D N SRG GFV F T E A+KALTEM+G M+
Sbjct: 303 NLDDSVDDERLRQEFSKFGDITSAKVMSD-NKQSRGFGFVCFKTPEAANKALTEMSGHMI 361
Query: 388 VSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP 445
SKPLYV AQ KE RR++L Q++ + P M P + P Q F IP
Sbjct: 362 GSKPLYVNFAQPKELRRSQLEAQYNARKQP-----QMIPQMMP----QFF-------IPA 405
Query: 446 QPGF---GYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML 502
Q F G Q ++P + P+ Q NQ GG G + A+
Sbjct: 406 QGAFPPPGSQ------IKPRW-QPVAGGRQSNQNRGGMSRGGSSQRGARGGNANTAKNA- 457
Query: 503 PRGRIYRYPPGCNIP-DVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANA 561
GRI N P + P P ++A +Q A LA
Sbjct: 458 --GRIKYNNNARNQPREQPQQTTPNT-------------QEAQTTQAPSDQLTAEYLAKL 502
Query: 562 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
S + Q+ LLGE L+PLV E NA K+TGMLL+M+ +++L L+ES +AL K+ EA++V
Sbjct: 503 SEQDQKQLLGERLFPLVHLREPKNAPKITGMLLDMEVSDILTLIESTDALNQKIKEAVKV 562
Query: 622 L 622
L
Sbjct: 563 L 563
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD SV+D +L F++ G + S +V D ++S G+G+V + A
Sbjct: 293 KYKGLNLYVKNLDDSVDDERLRQEFSKFGDITSAKVMSD--NKQSRGFGFVCFKTPEAAN 350
Query: 96 RALDELNFTPLNGKPIRIMYS 116
+AL E++ + KP+ + ++
Sbjct: 351 KALTEMSGHMIGSKPLYVNFA 371
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 275/611 (45%), Positives = 380/611 (62%), Gaps = 52/611 (8%)
Query: 10 APVAVAAQPSPATNGIANNGG--VGDARQF--VSTSLYVGDLDLSVNDSQLYDLFNQMGQ 65
APVA + TN + N G D+ Q S SLYVG+L+ SVN++ L+++F+ +GQ
Sbjct: 21 APVA-----TQETNVSSGNEGEDAADSSQLPDTSASLYVGELNPSVNEALLFEIFSPVGQ 75
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
V S+RVCRD T++SLGY YVN++ + +A++ELN++ ++G+P RIM+S RDP++R++
Sbjct: 76 VSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEELNYSLIDGRPCRIMWSQRDPSLRRN 135
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G GNIFIKNL +IDNKALHDTFS FG ILSCKVATD G S+ +GFV ++ E+AK+AI
Sbjct: 136 GEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAI 195
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+ +NGMLLND++V+VG + K++RES + K F NVYVKN+ +E++++K+F +G
Sbjct: 196 ENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYG 255
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
ITS + +DA+GKSK FGFVNF+ + A ++VE LN K + ++ YVG+AQKK ER E
Sbjct: 256 KITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEE 315
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
LK ++E + E K++G+NL+VKNLDDSI KL+E F FGTITS +VM D +G S+G
Sbjct: 316 LKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKG 375
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMY 423
GFV FS+ EEA+KA+TEMN +M KPLYVALAQRK+ RR++L+ Q++ RM
Sbjct: 376 FGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLE-QQIQARNQMRMQNA 434
Query: 424 PPVAPGLGQ---QLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQ-PGQQNQRPGG 479
GQ +FYGQ P PP G PG P VP Q P Q Q P
Sbjct: 435 AATGGIPGQFIPPMFYGQQPGFFPPN---GRGSAPFPGPNPQMMVPRGQIPPPQGQWPRA 491
Query: 480 RRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMP 539
+G QP+P +Y P PV G G G P
Sbjct: 492 GPNG--------QPVP-----------VYGIP--------PVYGDFAAANGGRQQRGYYP 524
Query: 540 FRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQL----EHDNAAKVTGMLLE 595
R +P + LA+ LA+A +QQ+ +LGE LYP + E + A K+TGM+L+
Sbjct: 525 NRQNQKGRPQKD--LAALLASAPVDQQKRILGEELYPKIVSTGRAQEPEAAGKITGMMLD 582
Query: 596 MDQTEVLHLLE 606
+D E+L LLE
Sbjct: 583 LDNQEILALLE 593
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 296/713 (41%), Positives = 402/713 (56%), Gaps = 139/713 (19%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD +RRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 179 KVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN+ TE++ +++F +FG +TS ++ RDA+ GKS+ FGFVNF + + AA
Sbjct: 239 ANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAAT 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLYVKNLDD I
Sbjct: 299 AVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDID 358
Query: 335 DDKLKELFSEFGTITSCKVMRDPN------------------------------------ 358
D+KL+ELF FG+ITS KVMRD
Sbjct: 359 DEKLRELFQSFGSITSAKVMRDTPAETAEAEEKKEKDEEKNKENKDTKETKETKKEGEAE 418
Query: 359 -------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
G S+G GFV F+ +EA+KA+++MN +MV +KPLYVALAQRK+ R++
Sbjct: 419 TEEASAPKAKRSLGKSKGFGFVCFNNPDEATKAVSDMNQRMVNNKPLYVALAQRKDVRKS 478
Query: 406 RLQFS-QMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP---QPGFGYQQQLVPGMRP 461
+L+ S Q R + RM A G+ QQ Y Q P PP QPGF L G R
Sbjct: 479 QLEASIQARNQI--RMQQAAAQA-GMPQQ--YMQAPMFFPPGAQQPGF-----LPQGGRG 528
Query: 462 NYFVP---MVQPGQQNQRPGGRRSGTGPMQQ-----AQQPIP----LMQPRMLPRGRIY- 508
F P M PG Q RPG ++G P Q A Q +P M P P G Y
Sbjct: 529 MQFPPQAGMPIPGAQGGRPGQFQAGFPPQQAGRGAPAGQQMPPNMYGMGPGQFPAGGQYP 588
Query: 509 --------------RYPPGCNIPDV--PVAGVPGGM-LP-GPYDI---------GGMPFR 541
+ G P+ P+ G+P M +P G + GGMP R
Sbjct: 589 QQNNPQFLAAMQAAQLTAGRGGPNARGPMQGMPPNMAMPMGQQGMPQFQQGARQGGMPGR 648
Query: 542 DAAFSQPMQ-TGALASALANASPEQ--------------------------------QRT 568
A +P Q G P+Q Q+
Sbjct: 649 GAQAGRPGQFAGGFPPQAGRGMPQQIPGMQQIPQMAQEGGVPATMLQAQVQAVAPQQQKQ 708
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
+LGE L+P + L+ + A K+TGMLLEM+ E+++L+E +L+AKV EA+ V
Sbjct: 709 ILGEALFPKIQVLQPELAGKITGMLLEMENQELINLIEDDASLRAKVDEALTV 761
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 286/648 (44%), Positives = 383/648 (59%), Gaps = 86/648 (13%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +A R
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK IDNK+++DTFS FGNILS
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA D G S+GYGFV F+ EE+A++AI K+NGMLL K+VFVG F + +R +T
Sbjct: 149 CKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 208
Query: 217 --RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+F NVYVKN + ++ L+K+F +FG ITS VM +GKSK FGFV F +P++A
Sbjct: 209 AKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAET 267
Query: 275 SVEALNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+V+AL+ + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD++
Sbjct: 268 AVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDET 327
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ DD LK+ F +G ITS KVM D NG S+G GFV F EEA+ A+TEMN KMV SKPL
Sbjct: 328 VDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPL 387
Query: 393 YVALAQRKEERRARLQFSQMRPPVGPRM-------PMYPPVAPGLG--------QQLFYG 437
YVA+AQRKE+RRA+L M+ RM MY P PG G QQ +
Sbjct: 388 YVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFA 447
Query: 438 QGPPIIPPQPGFGYQQQL----------VPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPM 487
G ++ P +G Q Q PG+ N M +P QNQ+ G R GP
Sbjct: 448 GGQQMVRPGGRWGMQNQYPVQNQYMMAQGPGVYQNR---MGRP--QNQQGGPR----GPP 498
Query: 488 QQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML---------------PGP 532
QQ Q + G + PP P V VP P P
Sbjct: 499 QQYNQ--------VAQGGVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQP 550
Query: 533 YD----------IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLE 582
Y IGG +P+ + LA+ A+P++Q+ LLGE +Y L+++L
Sbjct: 551 YQAYQQRPQGIVIGG--------QEPLTSAMLAA----AAPQEQKQLLGERIYALIEKLY 598
Query: 583 --HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
H +A K+TGM+LE+D +E++ +L+ E ++KV EA VL + +Q
Sbjct: 599 PGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSAQKQ 646
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 277/637 (43%), Positives = 377/637 (59%), Gaps = 67/637 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 41 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 100
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + + RIM+S RDP +RK+G GN+FIKNLD++IDNKALHDTF FGN+LSCK
Sbjct: 101 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCK 160
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G+S+GYGFV ++ E+A +AI +NGMLLNDK+V+VG + ++ER+S D K
Sbjct: 161 VATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKA 220
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+Y+KNL T+++ ++F +G +TS+ V D +GKSK FGFVN++ ++A R+V
Sbjct: 221 QFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAV 280
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ K+ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D DD
Sbjct: 281 DELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFDDD 340
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FG ITSCKVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+L
Sbjct: 341 KLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 400
Query: 397 AQRKEERRARLQFSQMRPPVGPRM---------------PMY----PPVAPGLGQQLFYG 437
AQR+E RR +L+ SQ+ RM PMY P P + YG
Sbjct: 401 AQRREVRRQQLE-SQIAQRNQIRMQQAAAAGVPGGYINGPMYYPPGPGFPPQGRGMMGYG 459
Query: 438 QGPPIIPPQPGFGYQQQLVPGMRP----------NYFVPMVQPGQQNQRPGGRRSGTG-- 485
Q P ++PP+ Y VP M P Y +P P + P R G+
Sbjct: 460 Q-PGMMPPR--IRYPNGQVPSMPPVPGPYGQGPQPYGMPGYPPRGAPRPPVARGPGSSPT 516
Query: 486 ----PMQQAQQPIP-----LMQPRMLPRGRIYRYP----------PGCNIPDVPVAGVPG 526
PM +A P P P+ P G P P N P G P
Sbjct: 517 HPSVPMPRANGPAPNGGAARPAPQGAPAGSRAPPPGAPAPGRAPQPAYNKPQARPQGAPV 576
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
P AA Q A LA ASP +Q+ +LGE +Y + + + A
Sbjct: 577 TAQPA-----------AAPQQSSLPNLTADQLAAASPMEQKQMLGEVIYMRIVPSQPELA 625
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
K+TGMLLEMD E+L LL+S EA+ AKV EA VL+
Sbjct: 626 GKITGMLLEMDNNELLALLDSEEAMNAKVQEANTVLQ 662
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 267/601 (44%), Positives = 375/601 (62%), Gaps = 64/601 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD +++SLGY YVNY+ + +A+
Sbjct: 51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAI 110
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN++P+ G+P RIM+S RDP+ R+SG GNIFIKNL +IDNKALHDTFSTFG ILSCK
Sbjct: 111 EELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD +GQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKA 230
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ +E+DLKK+F +G ITS + +DA+GKSK FGFVN++ + A ++V
Sbjct: 231 NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAV 290
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K+ + ++ YVG+AQKK ER ELK ++E + E K++G+NL++KNLDD+I +
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 350
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVAL 410
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRK+ RR++L+ Q++ RM Q
Sbjct: 411 AQRKDVRRSQLE-QQIQARNQMRM-------------------------------QNAAA 438
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML-----PRGRIYRYP 511
G P F+P + GQQ P P + P P P+M+ P G ++P
Sbjct: 439 TGGIPGQFIPPMFYGQQGFFP--------PNGRGNAPFPGPNPQMIMRRGQPFGGPEQWP 490
Query: 512 -PGCNIPDVPVAGVPGGMLPGPY-DIGGMPFRDAAFSQP-------MQTGALASALANAS 562
PG N VPV G+P P Y D G R P Q LA+ +A+A
Sbjct: 491 RPGPNGQPVPVYGIP----PQAYSDFNGQNIRQQRGYYPNRNQNKGRQQRDLAAIIASAP 546
Query: 563 PEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
P+QQ+ +LGE LYP + E + A K+TGM+L++D E+L LLE E +A
Sbjct: 547 PDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFTNHFEDA 606
Query: 619 M 619
+
Sbjct: 607 L 607
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 284/626 (45%), Positives = 370/626 (59%), Gaps = 74/626 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G S+GYGFV F+ EE+A +ID++NGMLLN K
Sbjct: 132 QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK------------------------ 167
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
KN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A ++V LN
Sbjct: 168 ---KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELN 224
Query: 281 GKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
GK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDSI D++L+
Sbjct: 225 GKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLR 284
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPLYVALAQR
Sbjct: 285 KEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQR 343
Query: 400 KEERRARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQQQLVP 457
KE+R+A L M+ RM M PG F P IP PQ +G Q
Sbjct: 344 KEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFV----PTIPQPQRFYGPAQMAQI 399
Query: 458 GMRPNYFVPMVQPGQQNQ-RPGGR--RSGTGPMQ---QAQQPIPLMQPRMLPRGRIYRYP 511
P + P Q NQ RP + SG MQ +A P Q + R + P
Sbjct: 400 RTTPRW------PAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQAGTM-RNTLSARP 452
Query: 512 -------PGCNIPDV----PVAGVPGGMLPGPYDIGG--------------MPFRDAAFS 546
G N+ + P GV P Y P + A
Sbjct: 453 ITGQQAVGGANMQNRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAMAIPAPTPVQQAVHI 512
Query: 547 QPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
Q Q AS LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE
Sbjct: 513 QG-QEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLE 571
Query: 607 SPEALKAKVAEAMEVLRNVAQQQATG 632
E+LKAKV EA+ VL+ +QA
Sbjct: 572 HNESLKAKVEEAVAVLQAHQAKQAVA 597
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 283/649 (43%), Positives = 377/649 (58%), Gaps = 91/649 (14%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST------RRS-------------- 80
SLYVGDL V ++ LY+ F+ G ++S+RVCRD RRS
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPELLPAPQPGEE 71
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
+ + + RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSID
Sbjct: 72 VQFCARKIPRVEPSERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 131
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
NKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFV
Sbjct: 132 NKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 190
Query: 201 GPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
G F ++ERE+ A F NVY+KN E ++ LK +FG+FG S VM D GKS
Sbjct: 191 GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 250
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
K FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +
Sbjct: 251 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 310
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378
++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA
Sbjct: 311 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKA 369
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR-------------------PPVG-- 417
+TEMNG++V +KPLYVALAQRKEER+A L M+ PP G
Sbjct: 370 VTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYF 429
Query: 418 --------PRMPMYPP------------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQL 455
R YPP A G F I P P+P F
Sbjct: 430 MAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS----- 484
Query: 456 VPGMRP-NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 514
MRP + VP V Q+ + G P A P + R +P+ Y+Y G
Sbjct: 485 --TMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGV 537
Query: 515 NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENL 574
P + P + P A Q AS LA+A P++Q+ +LGE L
Sbjct: 538 RNPQQHLNAQPQVTMQQP-----------AVHVQGQEPLTASMLASAPPQEQKQMLGERL 586
Query: 575 YPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 FPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 635
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 285/648 (43%), Positives = 382/648 (58%), Gaps = 86/648 (13%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +A R
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK IDNK+++DTFS FGNILS
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA D G S+GYGFV F+ EE+A++AI K+NGMLL K+VFVG F + +R +T
Sbjct: 149 CKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 208
Query: 217 --RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+F NVYVKN + ++ L+K+F +FG ITS VM +GKSK FGFV F +P++A
Sbjct: 209 AKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAET 267
Query: 275 SVEALNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+V+AL+ + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD++
Sbjct: 268 AVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDET 327
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ DD LK+ F +G ITS KVM D NG S+G GFV F EEA+ A+TEMN KMV SKPL
Sbjct: 328 VDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPL 387
Query: 393 YVALAQRKEERRARLQFSQMRPPVGPRM-------PMYPPVAPGLG--------QQLFYG 437
YVA+ QRKE+RRA+L M+ RM MY P PG G QQ +
Sbjct: 388 YVAIGQRKEDRRAQLASQYMQRVASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFA 447
Query: 438 QGPPIIPPQPGFGYQQQL----------VPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPM 487
G ++ P +G Q Q PG+ N M +P QNQ+ G R GP
Sbjct: 448 GGQQMVRPGGRWGMQNQYPVQNQYMMAQGPGVYQNR---MGRP--QNQQGGPR----GPP 498
Query: 488 QQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML---------------PGP 532
QQ Q + G + PP P V VP P P
Sbjct: 499 QQYNQ--------VAQGGVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQP 550
Query: 533 YD----------IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLE 582
Y IGG +P+ + LA+ A+P++Q+ LLGE +Y L+++L
Sbjct: 551 YQAYQQRPQGIVIGG--------QEPLTSAMLAA----AAPQEQKQLLGERIYALIEKLY 598
Query: 583 --HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
H +A K+TGM+LE+D +E++ +L+ E ++KV EA VL + +Q
Sbjct: 599 PGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSAQKQ 646
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 292/701 (41%), Positives = 405/701 (57%), Gaps = 128/701 (18%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+ T+D+ +++F +FG +TS+++ RD +GK + FGFVNF + A ++V
Sbjct: 238 NFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK F +E YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + D+
Sbjct: 298 EDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 357
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++F+EFG ITS KVMRD
Sbjct: 358 KLRQMFAEFGPITSAKVMRDTPQEGEEEVKDQEKDKENQKEAENEAESAESAEKKAEKKS 417
Query: 359 ----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS---- 410
G S+G GFV FS ++A+KA+ EMN +M+ +KPLYVALAQRK+ R+++L+ S
Sbjct: 418 DKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQAR 477
Query: 411 -QMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNY 463
Q+R P+ M PPV GQQ P PQ G G +P +P
Sbjct: 478 NQLRMQQAAAAAGMPQQYMQPPVFYAPGQQ-------PGFIPQGGRG-----MPFPQPGM 525
Query: 464 FVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVP--- 520
+P VQ G+ Q PG + G + Q IP P M G ++PP P P
Sbjct: 526 PLPNVQGGRPGQFPGYPQQGG---RNVPQGIP---PNMY--GIPGQFPPQFGQPGTPQFM 577
Query: 521 ---------------------------VAGVP----GGMLPG--PYDIGGMPFRDAAF-- 545
+AG+P GGM PG P + GM +
Sbjct: 578 AAMQQAQQQAAALAGGRGGAPQGGRGNIAGMPPNVQGGM-PGYPPNNRQGMGRNNNGGNN 636
Query: 546 ----------SQPMQTGALASAL----ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTG 591
+QP + +S L A A P QQ+ +LGE ++P + + + A K+TG
Sbjct: 637 NNAGRNGNFPNQPARDNNASSMLQSQLAAAQPAQQKQILGELIFPKIQAINAELAGKITG 696
Query: 592 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
MLLEMD +E+++L+E ALKAKV EA+ V + QA G
Sbjct: 697 MLLEMDNSELVNLIEDEAALKAKVDEALAVYDEYVKSQAAG 737
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 286/635 (45%), Positives = 379/635 (59%), Gaps = 71/635 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRA---LDELN--FTPLNGKPIRIMY-SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
D ++ F GK +++ S RDP++RKSG GN+FIKNLDKSIDNKAL+DT
Sbjct: 65 GEYGNLLFDRMDVCFHVAGGKAFTLLWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDT 124
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FGNILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++
Sbjct: 125 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRR 183
Query: 208 EREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
ERE+ A F NVY+KN E ++ LK+ F ++G S VM D GKSK FGFV+
Sbjct: 184 EREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVS 243
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
F+ +DA ++V+ +NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY
Sbjct: 244 FERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLY 303
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLDD+I D+KL++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG+
Sbjct: 304 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGR 362
Query: 386 MVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP 445
+V SKPLYVALAQRKEER+A L M+ G R L Q P
Sbjct: 363 IVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMR---------ALPANTLINQ----FQP 409
Query: 446 QPGFGYQQQLVPGM--RPNYFVP--MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM 501
PG GY VP RP Y+ P M Q RPG R TG Q QP+P +
Sbjct: 410 APG-GYFVPAVPQTQSRPTYYAPNHMAQI-----RPGPRWQQTG-RPQGFQPMPNTLRQS 462
Query: 502 LPRGRIYRYPPGCN-----IPDVP-VAGVPGGM----------------LPGPYDIGGMP 539
PR + PP IP V GV +P PY P
Sbjct: 463 GPRQSLRHMPPSNTQGTRGIPSVTQRVGVSSSTQTMGPRPPVSAPPPRAVP-PYKYTRCP 521
Query: 540 FRDAAFSQPMQTGA-----------LASALANASPEQQRTLLGENLYPLVDQLEHDNAAK 588
QP+QT AS LA+A P++Q+ +LGE L+PL+ + A K
Sbjct: 522 LPGV---QPLQTPQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGK 578
Query: 589 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 579 ITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQ 613
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 282/611 (46%), Positives = 392/611 (64%), Gaps = 36/611 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V +S LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VMRD++G+S+ FGFVNF+ ++A ++V+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+D++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIPPQPGF 449
QRKEER+A L R P P + + P V Q ++Y G I P QP
Sbjct: 369 QRKEERKAILTNQYRRRPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSG-SITPMQPDP 427
Query: 450 GYQQQLVPGMRPNYFVP---MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
+ Q P P+ P +VQP Q P SG Q +P Q R++ G
Sbjct: 428 RWTAQ--PHGPPSTCPPAASVVQPLSTTQHPCIHLSGAS---QVSSQVPHTQ-RVVNIGT 481
Query: 507 IYRYP--PGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPE 564
P G +IP + VP + G+ +++A P S LA A
Sbjct: 482 QTTGPGGEGSSIPGQLL--VPHRGTSAVHSAHGV--QESAVYVPGHQPLTVSMLAAAPLH 537
Query: 565 QQRTLLGENLYPLVDQLEHDNAA----KVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 620
+Q+ ++GE LY L+ HD A K+TGMLLE+D E+L LLESPE+L AK+ EA+
Sbjct: 538 EQKQMIGERLYSLI----HDACAPLTGKITGMLLELDNLELLLLLESPESLHAKIEEAVA 593
Query: 621 VLRNVAQQQAT 631
VL+ + ++T
Sbjct: 594 VLQVHREMEST 604
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 20/195 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L +V++ +L DLF+Q G + SV+V RD S +S G+G+VN+ E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R ++ R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI+++ L + FST+G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSINDERLKEVFSTYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 362 PLYVALAQRKEERKA 376
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 291/600 (48%), Positives = 374/600 (62%), Gaps = 71/600 (11%)
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+G V S+RVCRD TRRSLGY YVN++ +A RALD +NFT + G P RIM+S RDP++
Sbjct: 14 VGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSL 73
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESA 181
RKSG GNIF+KNLD SIDNKAL+DTFS FGNILSCKVA + + G S+GYG+V ++ E+A
Sbjct: 74 RKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAA 133
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI K+NGML+ +VFVG F ++Q+R D T N YVKN+ T+ DL K F
Sbjct: 134 TEAIAKINGMLIAGTEVFVGHFQKRQDRPDADDWT---NCYVKNIPTQWTDADLLKEFEP 190
Query: 242 FGIITSTAVMRDADG--KSKCFGFVNFDDPDDAARSVEALNGKKFD-----DKEWYVGKA 294
FG + S VM+D ++ FGFVN+++ D A ++V+ALNGK + D E YVGKA
Sbjct: 191 FGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKA 250
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
QK+ ERE EL+ KFEQ E +K++G+NLYVKNLDD +SDD+L+E F+E GTITS +VM
Sbjct: 251 QKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVM 310
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQM 412
RDPNG SRG GFV FST EEA+KA+ EMNGK++ KP+YVALAQRKE RRA+L Q +Q
Sbjct: 311 RDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQ 370
Query: 413 RP--PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQP--GFGYQQQLVPGMRPNYFVPMV 468
R VG MPM P G +FYGQ P +PPQ GF Y QQ+ M
Sbjct: 371 RAGMVVGRGMPMGQPPMYG-AAPMFYGQ-PGQLPPQARQGFMYPQQM-----------MP 417
Query: 469 QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ----------------PRMLPRGRIYR--- 509
+ Q+ P G R P P+P ++ PR R R
Sbjct: 418 RGVQRGPMPYGARVPGAP-APGGYPMPWLRHAHAAAAWPAASWPSGPRPAGSLRALRPTA 476
Query: 510 -------YPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANAS 562
P DVP P G++P P ++A +P+ + +ALA AS
Sbjct: 477 ATSSTRLTPATTPARDVP----PQGVMPP-----AAPVQNAG-PEPLTS----AALAAAS 522
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
PE Q+ ++GE LYPL+ + + + A K+TGMLLEMD E+LHLLESPEAL+AK+ EAM VL
Sbjct: 523 PEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAMTVL 582
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 20/290 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ LYD F+ G ++S +V + +T S GYGYV+Y A AT A+ +
Sbjct: 80 NIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAK 139
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N + G + + + R N ++KN+ + L F FG +LS V
Sbjct: 140 INGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVV 199
Query: 160 ATDSLG--QSRGYGFVQFDNEESAKSAIDKLNGMLLN-----DKQVFVGPFLRKQERE-- 210
D+ +RG+GFV ++ ++A A+D LNG D +++VG ++ ERE
Sbjct: 200 MKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERE 259
Query: 211 ----------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
+K + N+YVKNL + ++D+L++ F E G ITS+ VMRD +G S+
Sbjct: 260 LRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRG 319
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
FGFV F P++A ++V +NGK K YV AQ+K R +L+ + Q
Sbjct: 320 FGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQ 369
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L + F + G + S RV RD S G+G+V ++ EA
Sbjct: 274 KYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRD-PNGNSRGFGFVCFSTPEEAN 332
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIR 123
+A+ E+N ++GKP+ + + R R
Sbjct: 333 KAVAEMNGKLISGKPVYVALAQRKEVRR 360
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 281/611 (45%), Positives = 391/611 (63%), Gaps = 36/611 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V +S LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VMRD++G+S+ FGFVNF+ ++A ++V+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+D++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIPPQPGF 449
QRKEER+A L R P P + + P V Q ++Y G I P QP
Sbjct: 369 QRKEERKAILTNQYRRRPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSG-SITPMQPDP 427
Query: 450 GYQQQLVPGMRPNYFVP---MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
+ Q P P+ P +VQP Q P G Q +P Q R++ G
Sbjct: 428 RWTAQ--PHGPPSTCPPAASVVQPLSTTQHPCIHLRGAS---QVSSQVPHTQ-RVVNIGT 481
Query: 507 IYRYP--PGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPE 564
P G +IP + VP + G+ +++A P S LA A
Sbjct: 482 QTTGPGGEGSSIPGQLL--VPHRGTSAVHSAHGV--QESAVYVPGHQPLTVSMLAAAPLH 537
Query: 565 QQRTLLGENLYPLVDQLEHDNAA----KVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 620
+Q+ ++GE LY L+ HD A K+TGMLLE+D E+L LLESPE+L AK+ EA+
Sbjct: 538 EQKQMIGERLYSLI----HDACAPLTGKITGMLLELDNLELLLLLESPESLHAKIEEAVA 593
Query: 621 VLRNVAQQQAT 631
VL+ + ++T
Sbjct: 594 VLQVHREMEST 604
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 20/195 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L +V++ +L DLF+Q G + SV+V RD S +S G+G+VN+ E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R ++ R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI+++ L + FST+G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSINDERLKEVFSTYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 362 PLYVALAQRKEERKA 376
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/332 (73%), Positives = 276/332 (83%), Gaps = 16/332 (4%)
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
ISD+KLKELFS +GTITSCKVMRDP+G+S+GSGFVAFS EEAS+AL+EMNGKMVVSKPL
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 393 YVALAQRKEERRARLQ--FSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQG-PPIIP 444
YVALAQRKEERRARLQ FSQMRP V PRMPMYPP PGLGQQ+FYGQ P ++P
Sbjct: 61 YVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAMLP 120
Query: 445 PQPGFGYQQQLVPGMRP------NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
PQ GFGYQQQLVPGMRP N+F+PMVQ GQQ QRPG RR G P+QQ QQP+PLMQ
Sbjct: 121 PQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGSRRGGAVPLQQGQQPVPLMQ 180
Query: 499 PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASAL 558
+M PRGR YRYPPG +PDV GV GGM PYD+GGMP RDA QP+ GALA+AL
Sbjct: 181 QQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMGGMPVRDAGIVQPIPVGALATAL 240
Query: 559 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
AN+SP +QRT+LGENLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 241 ANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 300
Query: 619 MEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
MEVLRNV+QQQ++ +P D++ASLSLND +VS
Sbjct: 301 MEVLRNVSQQQSS--NPADQLASLSLNDGLVS 330
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
+++ LK++F +G ITS VMRD G SK GFV F +P++A+R++ +NGK K Y
Sbjct: 2 SDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLY 61
Query: 291 VGKAQKKYEREMELKGKFEQ 310
V AQ+K ER L+ +F Q
Sbjct: 62 VALAQRKEERRARLQAQFSQ 81
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
I ++ L + FS +G I SCKV D G S+G GFV F N E A A+ ++NG ++ K +
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 199 FVGPFLRKQERES 211
+V RK+ER +
Sbjct: 61 YVALAQRKEERRA 73
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110
++D +L +LF+ G + S +V RD S S G G+V ++ EA+RAL E+N + KP
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGV-SKGSGFVAFSNPEEASRALSEMNGKMVVSKP 59
Query: 111 IRIMYSYR 118
+ + + R
Sbjct: 60 LYVALAQR 67
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 270/621 (43%), Positives = 378/621 (60%), Gaps = 37/621 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD+ TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++R+SG GN+FIKNL+K+IDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
+D G S+G+GFV F+ EE+A+ AI+K+NGMLLND++VFVG F ++ERE+ F
Sbjct: 132 SDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L +FG FG I S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG+AQKK +R ELK KFEQ ++ + +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA++EMNG++V +KPLYVALAQ
Sbjct: 311 QKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRP---PVGPRMPM---YPPVAPGLGQQLFYGQGPPIIPPQ 446
RKEER+A L + + +R PV P P Y A Q I P+
Sbjct: 370 RKEERQAHLTNQYIQRMASVRSGPNPVNPYQPASSSYSVAAVPQTQNCVPCCPSQIAQPR 429
Query: 447 PGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
P + Q G RP+ F P V PG + P RS ++ + + + +
Sbjct: 430 PSARWIAQ---GSRPHPF-PNV-PGAIH--PAAPRSSLTTVRPSSSHVQVTTAHRITNTS 482
Query: 507 I----YRYPPGCNIPDVPVAGVP-----GGMLPGPYDIGGMPFRDAAFSQPMQTGALASA 557
R P + PV +P G+ + + A Q AS
Sbjct: 483 AQITGQRPAPASSATATPVHSIPQYKYAAGVQNSQQHLNAQLAQQPAVCIQGQEPWTASM 542
Query: 558 LANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 617
L A P++ + +LGE L+PL+ + A K+TGMLL++D +E L +LESP + ++ E
Sbjct: 543 LVTA-PQEPKQMLGERLFPLIQAMHPTLAGKITGMLLDIDNSEPLRMLESPVSRCSRAEE 601
Query: 618 AMEVLR----NVAQQQATGPS 634
A+ L+ A Q+A G +
Sbjct: 602 AVATLQAHQVKEAAQKAVGST 622
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 114/205 (55%), Gaps = 25/205 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D L LF + GQ++SV+V D +S G+G+V++ +A +A+D
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVD 249
Query: 100 ELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNK 142
E+N LNGK I + + + D +IR G N+++KNLD ID++
Sbjct: 250 EMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGI-NLYVKNLDDGIDDE 308
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS FG I S KV T+ G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 309 RLQKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVAL 367
Query: 203 FLRKQERESTADKTRFNNVYVKNLS 227
RK+ER++ N Y++ ++
Sbjct: 368 AQRKEERQA-----HLTNQYIQRMA 387
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 290 RYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R R++ N +I+ +
Sbjct: 348 KAVSEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYIQRM 386
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 279/657 (42%), Positives = 378/657 (57%), Gaps = 98/657 (14%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY------------ 88
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 89 -------------------NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
N A RALD +NF + GKP+RIM+S RDP++RKSG GN
Sbjct: 87 MNGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 146
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+N
Sbjct: 147 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 205
Query: 190 GMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLND++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S
Sbjct: 206 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 265
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK K
Sbjct: 266 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 325
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
FEQ ++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV
Sbjct: 326 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFV 384
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRM---PMYP 424
FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L M+ R P+
Sbjct: 385 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVIN 444
Query: 425 PVAPGLGQQLFYGQGPPI--------------IPPQPGFGYQQQLVPGMRPNYFVPMVQP 470
P P F P + P P + Q G RP+ F M P
Sbjct: 445 PYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQ-----GARPHPFQNM--P 497
Query: 471 GQQNQRPGGRRSGTGPMQQAQQPIP--------------LMQPR-------MLPRGRI-- 507
G RP R M+ A +P M PR P R
Sbjct: 498 GA--IRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVP 555
Query: 508 -YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQ 566
Y+Y G P + P + P A Q AS LA+A P++Q
Sbjct: 556 QYKYAAGVRNPQQHLNAQPQVTMQQP-----------AVHVQGQEPLTASMLASAPPQEQ 604
Query: 567 RTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 605 KQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 661
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 209/342 (61%), Gaps = 41/342 (11%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ----------------------- 197
D G S+GYGFV F+ +E+A+ AI+K+NGMLLN
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMN 119
Query: 198 --VFVGPFLR--KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
V G +R +R+ + K+ N+++KNL ++ L F FG I S V+ D
Sbjct: 120 FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 179
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+G SK +GFV+F+ + A R++E +NG +D++ +VG+ + + ERE EL + +
Sbjct: 180 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK---- 234
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373
E N+Y+KN + + D++LK+LF +FG S KVM D +G S+G GFV+F E
Sbjct: 235 ------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 288
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR 413
+A KA+ EMNGK + K +YV AQ+K ER+ L +F QM+
Sbjct: 289 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 330
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S + S G+G+V++ +
Sbjct: 233 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 289
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 290 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 349
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 350 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 408
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 409 LYVALAQRKEERQA-----HLTNQYMQRMA 433
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 273/617 (44%), Positives = 379/617 (61%), Gaps = 63/617 (10%)
Query: 10 APVAVAAQPSPATNGIANNGG--VGDARQF--VSTSLYVGDLDLSVNDSQLYDLFNQMGQ 65
APVA+ TN + N G D+ Q S SLYVG+L+ SVN++ L+++F+ +GQ
Sbjct: 21 APVAIQE-----TNVSSGNEGEDAADSTQLPDTSASLYVGELNPSVNEASLFEIFSPVGQ 75
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
V S+RVCRD T++SLGY YVN++ + +A+D+LN++ ++G+P RIM+S RDP++R++
Sbjct: 76 VSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLIDGRPCRIMWSQRDPSLRRN 135
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G GNIFIKNL +IDNKALHDTFS FG ILSCKVATD G S+ +GFV ++ E+A++AI
Sbjct: 136 GEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAI 195
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+ +NGMLLND++V+VG + K++RES + K F NVYVKN+ +E++++ +F +G
Sbjct: 196 ENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYG 255
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
ITS + +DA+GKSK FGFVNF+ + A ++VE LN K + + YVG+AQKK ER E
Sbjct: 256 KITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEE 315
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
LK ++E + E K++G+NL+VKNLDDSI KL+E F FGTITS +VM D +G S+G
Sbjct: 316 LKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKG 375
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMY 423
GFV FS+ EEA+KA+TEMN +M KPLYVALAQRK+ RR++L+ Q++ RM
Sbjct: 376 FGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLE-QQIQARNQMRMQNA 434
Query: 424 PPVAPGLGQ---QLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQ-PGQQNQRPGG 479
GQ +FYGQ P PP G PG P VP Q P Q Q P
Sbjct: 435 AATGGIPGQFIPPMFYGQQPGFFPPN---GRGSAPFPGPNPQMMVPRGQIPPPQGQWPRA 491
Query: 480 RRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPY------ 533
+G QP+P +Y PP A GG Y
Sbjct: 492 GPNG--------QPVP-----------VYGIPPVYG----DFAAANGGRQQRGYYPNRGQ 528
Query: 534 DIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQL----EHDNAAKV 589
+ G P +D LA+ LA+A +QQ+ +LGE LYP + + E + A K+
Sbjct: 529 NQKGRPQKD-----------LAALLASAPVDQQKRILGEELYPKIVSMGRAQEPEAAGKI 577
Query: 590 TGMLLEMDQTEVLHLLE 606
TGM+L++D E+L LLE
Sbjct: 578 TGMMLDLDNQEILALLE 594
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 274/629 (43%), Positives = 373/629 (59%), Gaps = 70/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD +TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIF+KNLD+SID+KAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E A+ AI+K+NGM LND++VFVG F +++R++ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KNL E ++ L+ +F +FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKF----------EQSLKETADKFEGLNLYVKN 328
+NGK + K+ YVG+AQKK ER+ ELK KF EQ ++ + + +G+NLYVKN
Sbjct: 251 MNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKN 310
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LDD I D++L++ FS FGTITS KV + G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 311 LDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 369
Query: 389 SKPLYVALAQRKEERRARLQFSQMR----------PPVGPRMPMYPP------------- 425
+KPLYVALAQRKEER+A L M+ P + P P P
Sbjct: 370 TKPLYVALAQRKEERQAHLSNQYMQRMASTSAVSSPVINPFQPAQAPSGYFMTTTSQTQN 429
Query: 426 ----VAPGLGQQLFYG-----QGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQR 476
AP Q G QG P Q + P P++ Q +
Sbjct: 430 CGAYYAPNQTTQQGPGHRGSAQGARAHPFQ---NMSSAIQPATIPSFSTSGPASSQALRS 486
Query: 477 PGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIG 536
R+G+ Q P +P +P+ Y+Y G P ++ P +
Sbjct: 487 MSTHRAGSASTQMMGSH-PTARP--VPQ---YKYTAGVRNPPQHLSAQPQVTMQ------ 534
Query: 537 GMPFRDAAFSQPMQTGA--LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
R A P+Q A AS LA+ASP+ Q+ +LGE L+ L+ + A K+TGMLL
Sbjct: 535 ----RSAV---PVQGKASLTASMLASASPQAQKQMLGEWLFSLIQAMHPALAGKITGMLL 587
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D E+ H+LESPE L K+ EA+ VL+
Sbjct: 588 EIDNLELRHMLESPECLHTKIDEAIAVLQ 616
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 166/289 (57%), Gaps = 18/289 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS+ G ILS +V D + +S GY V F E A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K V + +R+ + K+ N++VKNL + L F FG I
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK +GFV+F+ ++A R++E +NG +D++ +VG+ + + +R+ EL
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ + E N+Y+KNL + + D++L+ LFS+FG S KVM D +G S+G GF
Sbjct: 186 RAK----------EFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR 413
V+F E+A KA+ EMNGK + K +YV AQ+K ER+ L +F QM+
Sbjct: 236 VSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 37/224 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ +L ++D +L LF++ G +SV+V D S +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESG-KSKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR---------------------------DPTIRKSG 126
A +A+DE+N LNGK I + + + D ++R G
Sbjct: 244 ARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQG 303
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+
Sbjct: 304 V-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVT 361
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
++NG ++ K ++V RK+ER++ +N Y++ ++ T+
Sbjct: 362 EMNGRIVATKPLYVALAQRKEERQA-----HLSNQYMQRMASTS 400
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 280/638 (43%), Positives = 391/638 (61%), Gaps = 84/638 (13%)
Query: 9 QAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
+APVAV + + + N F + SLYVGDL VN+S L+++F+ +G V S
Sbjct: 20 EAPVAVPSASTASDN------------PFQTPSLYVGDLAPDVNESLLFEIFSAVGPVAS 67
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+RVCRD TRRSLGY YVN++ +A RA+D +NF+ + GKP RIM+S RDP++R+SG G
Sbjct: 68 IRVCRDAVTRRSLGYSYVNFHQMADAERAMDTMNFSMIKGKPCRIMWSQRDPSLRRSGVG 127
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
NIF+KNL+++IDNK L+DTFS FGNILSCKV TD G S GYG+V ++ E+A +AI+K
Sbjct: 128 NIFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEK 187
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
L+GML++ ++V VG F+R+ +R D + N Y+KN+ + L + F +FG + S
Sbjct: 188 LDGMLIDGQEVQVGHFMRRNDR---PDIDSWTNCYIKNVPYEWDDARLNQEFAQFGEVLS 244
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD--------KEWYVGKAQKKYE 299
V R+ ++ FGF+NF + + A +VEALNGK++ ++ YVG+AQKK E
Sbjct: 245 ATVSREDTNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSE 304
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-N 358
RE EL+ KFE + KF+G+NLYVKNLDDS++DD L++ F+ GTITS +VM+D +
Sbjct: 305 RERELRAKFEAEKMDRISKFQGVNLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKD 364
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGP 418
G SRG GFV +ST EE+++A+ EMNGK++ +KP++VALAQR+E RRA+L+ GP
Sbjct: 365 GRSRGFGFVCYSTPEESTRAVNEMNGKLIANKPIFVALAQRREVRRAQLEAQHANRAGGP 424
Query: 419 RMP--MYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQR 476
P M P+ +G G P+ +PG G GM+P Y PM+ Q
Sbjct: 425 GQPGMMRAPMGAPMGYP-----GMPMYMQRPGPG------GGMQPAY--PMMP---QMMG 468
Query: 477 PGGRRSGTGPM------------QQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGV 524
PGGRR PM QQPI Q V AG
Sbjct: 469 PGGRRV---PMAGRGGRGRGPMPGPGQQPIKFNQ-------------------QVRNAGP 506
Query: 525 PGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHD 584
P P P+ G A + P + ASALA+ASPE Q+ ++GE LYPL+ Q + +
Sbjct: 507 PMQNQP-PHQQG------APQAIPHEGALTASALASASPEVQKNMIGERLYPLIHQSQPE 559
Query: 585 NAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
A K+TGMLLEMD +E+LHLLESP+AL +K++EA++VL
Sbjct: 560 LAGKITGMLLEMDNSELLHLLESPDALNSKISEALQVL 597
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 263/604 (43%), Positives = 377/604 (62%), Gaps = 41/604 (6%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ SLYVG+L+ S+N++ L+++F+ +GQV S+RVCRD T+RSLGY YVNY+ + +A
Sbjct: 58 TTASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKA 117
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+DELN++ + G+PIRIM+S RDP R++G GN+FIKNL +IDNKALHDTFS FG ILSC
Sbjct: 118 IDELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSC 177
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT- 216
KVATD+ GQS+G+GFV F++ E+A++AI+ +NGMLLN+ +V+VGP + +++R+S ++
Sbjct: 178 KVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLEEVI 237
Query: 217 -RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN+ +E+++K++F FG +TS + +DA+GKS+ F FVN+++ + A +S
Sbjct: 238 KSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKS 297
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
+E+LN + + K+ YVG+AQKK ER ELK ++E + E K +G+NL+VKNLDDSI D
Sbjct: 298 IESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDD 357
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KLKE F FGTI+S KVM D +G S+G GFV+FS+ EEAS+A++EMN M+ KPLYVA
Sbjct: 358 EKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVA 417
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQ-----LFYGQGPPIIPPQPGFG 450
LAQRK+ RR++L+ Q++ R+ A GL Q YGQ P +PP
Sbjct: 418 LAQRKDVRRSQLE-QQIQARNQLRL-QQAAAAGGLPGQFIPTPFIYGQQPQFLPPG---- 471
Query: 451 YQQQLVPGMRPN--YFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIY 508
G PN + +P G Q GG+ G P Q A LP+
Sbjct: 472 -----ARGPLPNQPFLIPRPGQGLPPQAAGGQWVGGRPGQPA---------YGLPQ-EFQ 516
Query: 509 RYPPGCNIPDVPVAGVP----GGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPE 564
++P G G GG P P P A LAS L N E
Sbjct: 517 QFPQGGRGGFRGGRGNGPRNQGGRGPAP---NAAPIDPNAQPGAGNVAQLASILPNVPVE 573
Query: 565 QQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 620
QQ+ LLGE LY + + ++A K+TGM+L+++ E+L LLE+ E K +A +
Sbjct: 574 QQKRLLGEELYQRIVSTGKAQDPESAGKITGMMLDLENQEILSLLENEELFKQHFDDAFQ 633
Query: 621 VLRN 624
+
Sbjct: 634 AYED 637
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 275/652 (42%), Positives = 375/652 (57%), Gaps = 42/652 (6%)
Query: 20 PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
P T G++ + SLYVGDL V +S LY+ F+ G ++S+RVCRD T+
Sbjct: 25 PGTIGLSGGSHGHSTPNSPTASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQH 84
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
SLGY YVN+ A L +N + G PIRIM+S RDP RK G GN+F+KNL+KSI
Sbjct: 85 SLGYAYVNFQHRAHAEWVLATMNLDVIKGNPIRIMWSQRDPGQRKRGVGNVFVKNLEKSI 144
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
DNKAL+DTFSTFG ILSCKV +D G S+GYGFV F+ +ESA AI+K+NGMLLN+ +VF
Sbjct: 145 DNKALYDTFSTFGRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVF 203
Query: 200 VGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
VG F ++ERES + N+Y+KN E + L +IF ++G S VM D G+
Sbjct: 204 VGRFKSRRERESELGVKAKDYTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGR 263
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETAD 317
SK FGFV+F +DA +V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ +
Sbjct: 264 SKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHI 323
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
+++G+NLY+KNLDD+I+D+ L++ FS FGTITS KVM + NG S+G GFV FS++++A+K
Sbjct: 324 RYQGVNLYIKNLDDTINDEHLRKEFSPFGTITSAKVMME-NGRSKGFGFVCFSSSKDAAK 382
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAP-GLGQQLFY 436
A EMNGK+V SKPLYV+LAQRKEERR L+ M R P P L Y
Sbjct: 383 ASREMNGKLVASKPLYVSLAQRKEERRMHLKNQYMYRLAHLRSISNPVFNPYQLANSSPY 442
Query: 437 GQGPPIIPPQPGFGYQQQLVPGMR--PNYFVPMVQPGQQNQR-----PGGRRSGTGPMQQ 489
P + Y + +R P + ++P + P R+ P++
Sbjct: 443 FMTPSLPSQSQAALYNASQLAQLRSSPRWISKSIRPPSFHTLTKAICPNIPRATFSPLRS 502
Query: 490 AQQPIPLMQPRMLPRGRIYRYP-------PGC-----NIPDVPVAGVPGGMLPGPYDIGG 537
+ PRM R+ P PG +P+VP G+
Sbjct: 503 TSE-----IPRMGATSRVANSPAQMLGPLPGTGTFLPTVPNVPHLKYDAGVDYPEQPFSK 557
Query: 538 MPFRDAAFSQPM-----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGM 592
P+ QP Q + S LA+A P +Q+ +LGE L+P++ + A K+TGM
Sbjct: 558 SPYISTLARQPAGHISGQESLMPSMLASALPPEQKRILGERLFPIIQGISPTLAGKITGM 617
Query: 593 LLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RNVAQQQ---ATGPSPT 636
LLE D +E+LHLLESPE+L KV EA VL + V Q++ ATG +PT
Sbjct: 618 LLETDNSEILHLLESPESLHCKVKEAAAVLQTHQAKEVTQKEVNGATGGAPT 669
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 279/630 (44%), Positives = 371/630 (58%), Gaps = 66/630 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-----LSTRRSLGYGYVNYNA----- 90
SLYVGDL V ++ LY+ F+ G ++S+RVCRD L TRRSLGY Y+N+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYINFQQPADGE 71
Query: 91 --AHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
A A RALD +NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTF
Sbjct: 72 EQAQRAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 131
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
STFGNILSCKV D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++E
Sbjct: 132 STFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 190
Query: 209 REST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
RE+ A F N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF
Sbjct: 191 REAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNF 250
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
+ ++A ++V +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYV
Sbjct: 251 EKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYV 310
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVM---------RDPNGISRGSGFVAFSTAEEASK 377
KNLDDSI DDKL++ FS +G ITS K + DP G S ++ EEA+K
Sbjct: 311 KNLDDSIDDDKLRKEFSPYGVITSAKGVGAGYPFWGSADPVGTCSPSAALS-GLKEEATK 369
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARL------QFSQMR----PPVG----PRMPMY 423
A+TEMNG++V +KPLYVALAQRKEER+A L + S MR P +G P
Sbjct: 370 AVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFL 429
Query: 424 PPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSG 483
P V Q +YG G P+ P QP + Q RP+ + P +
Sbjct: 430 PAVPQPPAQAAYYGCG-PVTPTQPAPRWTSQ---PPRPS----CASMVRPPVMPRRPPAH 481
Query: 484 TGPMQQAQQPIPLMQP---RMLPRGRIYRYP--PGCNIPDVPVAGVPGGMLPGPYDIGGM 538
++QA +P M P R+ G P GC P P+ PY
Sbjct: 482 ISSVRQASTQVPRMVPHTQRVANIGTQTTGPGGVGCCTPGRPLL---------PYKCSSA 532
Query: 539 PF-----RDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGML 593
++ A P Q AS LA A +Q+ ++GE LYPL+ + A K+TGML
Sbjct: 533 AHSTYRVQEPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGML 592
Query: 594 LEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
LE+D +E+L +LESPE+L AK+ EA+ VL+
Sbjct: 593 LEIDNSELLLMLESPESLHAKIDEAVAVLQ 622
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 38/226 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 197 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 255
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 256 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 312
Query: 135 LDKSIDNKALHDTFSTFGNILSCK---------VATDSLGQSRGYGFVQFDNEESAKSAI 185
LD SID+ L FS +G I S K + D +G + EE+ K A+
Sbjct: 313 LDDSIDDDKLRKEFSPYGVITSAKGVGAGYPFWGSADPVGTCSPSAALSGLKEEATK-AV 371
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
++NG ++ K ++V RK+ER K N Y++ LS T
Sbjct: 372 TEMNGRIVGTKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 412
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 271/649 (41%), Positives = 374/649 (57%), Gaps = 76/649 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FG+ILSCKV
Sbjct: 72 MNFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F EE+A +I+K+NGMLLN K+V+VG F+ ++ER + +F
Sbjct: 132 CDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKKF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR-DADGKSKCFGFVNFDDPDDAARSVE 277
NV+VKN + ++ L+++F +G I S VM+ D G++K FGFV F+DP DA + +
Sbjct: 191 TNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACD 250
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LN K + + YVG+AQKK ER+ EL+ +FE E A++++G+NLYVKNLDDS+ D++
Sbjct: 251 DLNMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSLDDER 310
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 311 LRKEFMPFGTITSAKVMSE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 369
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQ--QLFYGQGPPIIPPQPGFGYQQQL 455
QRKE+R+A L M+ G R+ PG Q Q++ P Q
Sbjct: 370 QRKEDRKAHLASQFMQRMSGLRL-------PGQAQMGQMYQSNVSAYFP---------QT 413
Query: 456 VPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM-----------QPRMLPR 504
VP + +F Q Q P +S QA M PR
Sbjct: 414 VPQTQRGFFAAPTQVAQVRASPRWPQSSQPRPAQASAGFQSMPNAAAAQFRAGTPRTATS 473
Query: 505 GRIYRYPPGCNIPDVPVAGVP-GGMLPGPYDI-------------GGMPFRDAAFSQPMQ 550
P G +P P A G++PG P F+ M+
Sbjct: 474 NVRPVTPAGRGVPQPPTAAQRVAGVMPGQQQAAAAAAAAAQRGVPSAQPRASYKFTTTMR 533
Query: 551 ------TGALASALANASPEQ----------------------QRTLLGENLYPLVDQLE 582
SAL+ +P+Q Q+ +LGE L+PL+
Sbjct: 534 NPPPQIPNQQQSALSQQTPQQSVQVPGQEPLTSSMLAAAPPQEQKQMLGERLFPLIQLTH 593
Query: 583 HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
+ A K+TGMLLE+D +E+LH+LES E+L AKV EA+ VL+ ++ T
Sbjct: 594 GELAGKITGMLLEIDNSELLHMLESRESLNAKVEEAVAVLKAHQAKETT 642
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 110/200 (55%), Gaps = 27/200 (13%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++F T+++V + ++D L ++F + G++VS +V +D + R+ G+G+V +
Sbjct: 185 GQQKKF--TNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDP 242
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIF 131
+A A D+LN +NG RI+Y R + R G N++
Sbjct: 243 IDAENACDDLNMKDING---RILYVGRAQKKIERQAELRNRFELMKAERANRYQGV-NLY 298
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
+KNLD S+D++ L F FG I S KV ++ G+S+G+GFV F + E A A+ ++NG
Sbjct: 299 VKNLDDSLDDERLRKEFMPFGTITSAKVMSEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 357
Query: 192 LLNDKQVFVGPFLRKQERES 211
+++ K ++V RK++R++
Sbjct: 358 IVSTKPLYVALAQRKEDRKA 377
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 274/615 (44%), Positives = 363/615 (59%), Gaps = 90/615 (14%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+S+SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVNY A +A RA
Sbjct: 8 ISSSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERA 67
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN TP+ GKP RIM+S RDP++RKSG GN+FIKNLDK ID+KAL+DTFS FGNILSC
Sbjct: 68 LDTLNNTPIRGKPCRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC 127
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD S+G+GFV +++++SA AI K+NGM++N ++VFVGPF +ER + +
Sbjct: 128 KVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTE-IK 186
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSV 276
F NV+ KNL+E T D LK++ +G IT+ A+M D GKSK F F NF+ D A V
Sbjct: 187 FTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVV 246
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E NGK F K Y G+AQKK ERE ELK FE K++G+NLY+KN+DDSI +D
Sbjct: 247 EIENGKVFHGKPLYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDDSIDND 299
Query: 337 KLKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+E+FS+FGTITS VM+D S+G GFV +++ +EA++A+TEMNG+M+ +KPLYVA
Sbjct: 300 KLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYVA 359
Query: 396 LAQRKEERRARLQF-SQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP---QPGFGY 451
LAQRK+ RRA+L+ Q + G R M P Y GP P P Y
Sbjct: 360 LAQRKDIRRAQLEMQHQQKFKAGMRQTMAPA----------YSGGPVFFTPAPVTPAVVY 409
Query: 452 QQQLVPGMRPNYFVPMVQPGQQ----------NQRPGGRRSGTGPMQQAQ-----QPIPL 496
QQ++P R P+ PG Q RP G+R TGP Q QPI
Sbjct: 410 -QQMMPRPRNWNGAPVGVPGNQYGMNYVRGGGQPRPNGQRP-TGPRPNGQRPDSAQPIAT 467
Query: 497 MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM-QTGA-- 553
QP + D A QP +GA
Sbjct: 468 QQPAV----------------------------------------DQATQQPQAASGASQ 487
Query: 554 -----LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLE-MDQTEVLHLLES 607
L+S LA + +QQ LGE LYPL+ + + A K+TGMLL+ + E+ L +
Sbjct: 488 EAAPTLSSILALPTRDQQNVALGELLYPLIHNSQPELAGKITGMLLDSLPVEELFALTQR 547
Query: 608 PEALKAKVAEAMEVL 622
+ L K+ EA++VL
Sbjct: 548 SDLLNEKIKEAIDVL 562
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ ++D S+++ +L ++F+Q G + S V +D S G+G+V Y + EAT
Sbjct: 281 KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEAT 340
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA+ E+N + KP+ + + R
Sbjct: 341 RAVTEMNGRMIGTKPLYVALAQR 363
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 272/643 (42%), Positives = 378/643 (58%), Gaps = 61/643 (9%)
Query: 8 PQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
P + A A+ A NG + + F S LYVGDLD SV +S LY++F+++GQV
Sbjct: 30 PASEKADGAKSEEAENGKDTKDSKDNEQTFAS--LYVGDLDPSVTESDLYEIFSKVGQVS 87
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRB T++SL Y YVNY EA ALD L F + GK RIM+S RDP++RK G
Sbjct: 88 SIRVCRBAVTKKSLCYAYVNYQKREEAEHALDTLAFCDIKGKQCRIMWSQRDPSMRKKGT 147
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GN+FIKNL IDNK L+DTFSTFG ILSCK+ATD G S+G+GFV +D+ ESAK+AI+
Sbjct: 148 GNVFIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIEN 207
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADK--TRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLLN+ +V+V P + +++RES + F NVYVKN TED L+++F +G +
Sbjct: 208 VNGMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKV 267
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD-DKEWYVGKAQKKYEREMEL 304
TST + D +GK++ FGFVNF+D +AA++V+ALN K+ + + YVG+AQKK ERE L
Sbjct: 268 TSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREESL 327
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
+ +++Q+ +E K++G+NL+VKNLDD+I D KLKE F+ +G ITS KVM + G SRG
Sbjct: 328 RKQWQQARQERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGKSRGF 387
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL-----QFSQMRPPVGPR 419
GFV ++ EEA++A+ EM+ +MV+ KPLYVALAQRKE R +L Q +QMR
Sbjct: 388 GFVCYTKPEEATRAINEMHQRMVMGKPLYVALAQRKEVRHNQLSQQFQQRNQMR------ 441
Query: 420 MPMYPPVAPGLGQ---QLFYGQGPPIIPPQP---------GFGYQQQLVP--GMRPNYFV 465
V G+GQ +FYGQ IPP P G G Q ++ RP V
Sbjct: 442 -LQQAAVQGGMGQFVAPMFYGQNAGFIPPMPAGVRGAPFAGNGAPQMMMQQGASRPGQGV 500
Query: 466 PMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL-MQPRM----LPRGRIYRYPPGCNIPDVP 520
P V PGQ P G QP+P+ MQP + + RY N + P
Sbjct: 501 P-VSPGQFRVGPNG------------QPVPMYMQPMFNEYQQQQQQQQRYYQRQNHGNAP 547
Query: 521 VAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQ 580
G PG A + + + +LA L +PEQQ+ LGE LY ++
Sbjct: 548 AGAEKKGDKPGE--------EQEAAATAVNSASLADFLPKLAPEQQKRALGEELYAKIEA 599
Query: 581 L----EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
+ + K+TGM+L MD ++L +L+ + +A+
Sbjct: 600 TGKASDKEAVGKITGMMLSMDNKQILDMLKDDALFNTQFQQAL 642
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/606 (43%), Positives = 362/606 (59%), Gaps = 68/606 (11%)
Query: 17 QPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS 76
+ +PA+ + + GD STSLYVG+LD SV+++ LYDLF+ +G V S+RVCRD
Sbjct: 25 EATPASTASSESQQAGD-NDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAI 83
Query: 77 TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
T+ SLGY YVN++ +A+++LN+TP+ GK RIM+S RDP++RK G GNIFIKNL+
Sbjct: 84 TKTSLGYAYVNFSDHEAGKQAIEKLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLN 143
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ IDNKAL DTFS FGNILS K+ATD G+S+G+GFV F+ E +A AID LNGMLLN +
Sbjct: 144 QDIDNKALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQ 203
Query: 197 QVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
+++V P L ++ER+S ++T+ F NVYVKN+ TT+++ K+ FG+ G +TS A+ R
Sbjct: 204 EIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGP 263
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKE 314
DGK K FGFVN++D +DA ++VE LNG +F D+E +VG+AQKKYER LK ++E + E
Sbjct: 264 DGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLE 323
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374
K++G+NL+VKNLDDSI D+KL+E F+ FG ITS KVMR NG S+G GFV FS+ EE
Sbjct: 324 KMAKYQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEE 383
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQL 434
A+KA+TE N ++V KPLYVA+AQRK+ RR SQ+ + R M A
Sbjct: 384 ATKAITEKNQQIVAGKPLYVAIAQRKDVRR-----SQLAQQIQARNQMRYQQATAAAAAA 438
Query: 435 FYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPI 494
G +PP + G+ P VP GP Q +
Sbjct: 439 AAGIPGQFMPP---------MFYGVMPPRGVPF----------------NGPNPQQMNGV 473
Query: 495 PLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGAL 554
P P+ G +Y PP G P G P R+A GA
Sbjct: 474 P---PQQFRNGPMYGMPP---------QGAPQGAFP----------RNA--------GAN 503
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDN--AAKVTGMLLEMDQTEVLHLLESPEALK 612
A+ ++QR LGE LY + D A K+TGM+L++ EV+ LLE+ + +
Sbjct: 504 ANQFYQ---QKQRQALGEQLYKKISAKTSDEEAAGKITGMILDLPPQEVVSLLENDDLFE 560
Query: 613 AKVAEA 618
EA
Sbjct: 561 QHFTEA 566
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 282/687 (41%), Positives = 391/687 (56%), Gaps = 114/687 (16%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYNA + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN++ TEDD +++F +FG +TS+++ RD +GKS+ FGFVNF + A+++V
Sbjct: 238 NFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + DD
Sbjct: 298 DDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 357
Query: 337 KLKELFSEFGTITSCKVMRDP--------------------------------------- 357
KL+++FSEFG ITS KVMR+
Sbjct: 358 KLRQMFSEFGPITSAKVMRETPTEGDEDKKEETQDDKEKENKEEAKEEANEETKEGEEAK 417
Query: 358 ----------NGISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
+ + GF V FS ++A+KA+ EMN +M+ +KPLYVALAQRK+ R++
Sbjct: 418 DDKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKS 477
Query: 406 RLQFS-----QMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQ 454
+L+ S Q+R P+ M PPV GQQ P PQ G G
Sbjct: 478 QLEASIQARNQLRMQQAAAAAGMPQQYMQPPVYFAPGQQ-------PGFMPQGGRG---- 526
Query: 455 LVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP-LMQPRMLPRGRIYRYPPG 513
VP +P +P VQ G+ Q PG P Q + +P M P M G ++PP
Sbjct: 527 -VPFPQPGMGMPGVQGGRPGQFPG------YPQQGGRGGVPQQMPPNMY--GMPGQFPPQ 577
Query: 514 CNIPDVPV--------------AGVPGGMLPGPYDI-GGMPFRDAAFSQPMQTGALASAL 558
P P G P G GP ++ GG P P
Sbjct: 578 FGQPGTPQFMAAMQAQQAALGGRGAPQGGRGGPQNMPGGPPMAGGMAGFPPNNRQQGGRG 637
Query: 559 --------------ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
A + Q+ +LGE ++P + + + A K+TGMLLEMD E+++L
Sbjct: 638 GPGRNGNAPQGGRGAEGAGPNQKQILGELIFPKIQAINGELAGKITGMLLEMDNAELVNL 697
Query: 605 LESPEALKAKVAEAMEVLRNVAQQQAT 631
+E ALKAKV EA+ V + Q +
Sbjct: 698 IEDDAALKAKVDEALAVYDEYVKAQGS 724
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 269/597 (45%), Positives = 366/597 (61%), Gaps = 21/597 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNLD SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A AI+ +NGMLLND++VFVG F +QERE+ A F
Sbjct: 132 CDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKN ++ L+++F +FG S VM D +G+S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSN 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDD I D+KL
Sbjct: 251 MNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMP-----MYPPVAPGLGQQLFYGQGPPI-IPPQ 446
RKEER+A L + S +R GP P P + + FY + P
Sbjct: 370 RKEERKAILTSQYMQRLSTLRGLNGPLFPQPTNYFLPAIPQPPARATFYSPSTVAPVRPA 429
Query: 447 PGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
P + P + ++ P P S ++QA +P P M
Sbjct: 430 PRWTSYSPRSSCESPTXLIVLLLPAT----PRRTVSNISTVRQASTQVPRAGPHMQRVAN 485
Query: 507 IYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQ 566
I G P P V A Q Q AS LA+A ++Q
Sbjct: 486 IGTQTMGTGCPGSPGRAVAQYKYSSAVRNTHQVMEPAVHIQG-QEPLTASMLASAPVQEQ 544
Query: 567 RTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ +LG+ LYPL+ + A K+TGMLLE+D +E+L LLESPE+L +K+ EA+ L+
Sbjct: 545 KQMLGDRLYPLIYGIHAQLAGKITGMLLEIDNSELLLLLESPESLHSKIEEAIAALQ 601
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 105/194 (54%), Gaps = 18/194 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV + + ++D L +LF+Q G+ +SV+V D +S G+G+VN+ E
Sbjct: 185 ARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVD-ENGQSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+ +N L G+ + R + + + N+++KNLD
Sbjct: 244 AQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG +++ K
Sbjct: 304 IIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKP 362
Query: 198 VFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 363 LYVALAQRKEERKA 376
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 294/689 (42%), Positives = 389/689 (56%), Gaps = 117/689 (16%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 53 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 112
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 113 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 172
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 173 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 232
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKN+ + TT+++ +++F +FG ITS + RD++ GKS+ FGFVNF + AA +
Sbjct: 233 NFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAA 292
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K F ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 293 VDNLNEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 352
Query: 336 -----------------------------DKLKELFSEF--------------------- 345
D KE SE
Sbjct: 353 EKLRDLFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKENEPPEESKDEAAEKAETKD 412
Query: 346 ---GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
S K + G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+
Sbjct: 413 TKEAKTESKKADKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 472
Query: 403 RRARLQFS-QMRPPVG----------PRMPMYPPVAPGLGQQLFYGQGPPIIP-PQPGFG 450
RR++L+ S Q R + P+ M PPV G GQQ F +P QPG
Sbjct: 473 RRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPPVFYGPGQQNFLPNQRGGMPFQQPGMV 532
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQ--------AQQPIPLMQPRML 502
Q +PG R F PGQQ GGR G P QQ Q +P+ +
Sbjct: 533 IPQ--MPGGRHGQFSGF--PGQQ----GGR--GMNPNQQIPPNAYGLGAQGLPISMQGGM 582
Query: 503 PRGRIY------RYPPGCNIPDVP-VAGVP---GGMLPGPYDIGGMPFRDAAFSQPMQTG 552
P G Y + P G VP V G+P GM P GMP + +P Q G
Sbjct: 583 PNGLNYPQMAQVQAPFGRGRGQVPAVQGMPPNVQGMGPNAQFGRGMPMQQ-GMGRPGQAG 641
Query: 553 -------------------ALASALANAS-PEQQRTLLGENLYPLVDQLEHDNAAKVTGM 592
L + NA+ P QQ+ +LGE +YP + + + A K+TGM
Sbjct: 642 RGQGPAQAAGQRDETSSPSGLTLQMLNAAPPAQQKQMLGEAIYPKIHAHQPELAGKITGM 701
Query: 593 LLEMDQTEVLHLLESPEALKAKVAEAMEV 621
LLEMD E+L L++ ALKAKV EA+ V
Sbjct: 702 LLEMDNAELLALVDDDTALKAKVDEALTV 730
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 272/616 (44%), Positives = 376/616 (61%), Gaps = 67/616 (10%)
Query: 7 QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
Q Q PVA + S G ++ GV + S SLYVG+L+ SVN++ L+++F+ +GQV
Sbjct: 22 QQQQPVAATTEQSAEEQG--DSSGVAEN----SASLYVGELNPSVNEATLFEIFSPIGQV 75
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD +++SLGY YVNY+ + +A++ELN+TP+ G+P RIM+S RDP+ R+SG
Sbjct: 76 SSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRSG 135
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GNIFIKNL +IDNKALHDTFS FG ILSCKVATD LGQS+ +GFV ++ E+A++AI+
Sbjct: 136 DGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDELGQSKCFGFVHYETAEAAEAAIE 195
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGMLLND++VFVG + K++RES + K F N+YVKN+ TE++ +K+F +G
Sbjct: 196 NVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGK 255
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS + +D DGKSK FGFVNF++ D A ++VE LN K+ + ++ YVG+AQKK ER EL
Sbjct: 256 ITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQKIYVGRAQKKRERMEEL 315
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K ++E E K++G+NL+VKNLDDSI +KL+E F FGTITS KVM D G S+G
Sbjct: 316 KKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGF 375
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYP 424
GFV F+T EEA+KA+TEMN +MV +KPLYVALAQRK+ RR++L+ Q++ RM
Sbjct: 376 GFVCFTTPEEATKAITEMNQRMVNNKPLYVALAQRKDVRRSQLE-QQIQARNQMRM---- 430
Query: 425 PVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT 484
Q G P F+P + GQQ P
Sbjct: 431 ---------------------------QNAAAAGGLPGQFMPPMFYGQQGFFP------- 456
Query: 485 GPMQQAQQPIPLMQPRMLPRGRIYRYP-----PGCNIPDVPVAGVP--------GGMLPG 531
P + P P P+M+ RGR +P PG N VPV G+P G +
Sbjct: 457 -PNGRGNAPFPGPNPQMMMRGRGQPFPEQWPRPGPNGQPVPVYGIPPQFQQDFNGQNVRP 515
Query: 532 PYDIGGMPFRDAAFSQPMQTGA--LASALANASPEQQRTLLGENLYPLV----DQLEHDN 585
P R + QT LA+ +A+ +QQ+ +LGE LYP + E +
Sbjct: 516 PQQQQQQQPRGGYYPNRNQTNKRDLAAIIASVPQDQQKRILGEELYPRIVATGKAQEPEA 575
Query: 586 AAKVTGMLLEMDQTEV 601
A K+TGM+L ++ E+
Sbjct: 576 AGKITGMMLGLENQEI 591
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 289/641 (45%), Positives = 394/641 (61%), Gaps = 55/641 (8%)
Query: 11 PVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVR 70
P A QP+ NN + +TSLYVG+LD SV ++ L+++F+ +G V S+R
Sbjct: 23 PAPAAEQPAVGNGEQRNNADAAN-----NTSLYVGELDPSVTEAMLFEIFSMIGTVASIR 77
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNI 130
VCRD TRRSLGY YVN+ A + RA+++LN++ + +P RIM+S RDP +R++G GNI
Sbjct: 78 VCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNI 137
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
FIKNLD IDNKALHDTF+ FGNILSCKVAT+ G S GYGFV ++ E+A++AI +NG
Sbjct: 138 FIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNG 196
Query: 191 MLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
MLLNDK+V+VG + ++ER++ ++TR F NVY KN+ T+D+ +K+F +FG ITS
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC 256
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ RD DGKSK FGFVNF+D ++A ++V+ L+ F ++ +V +AQKK ERE EL+ +
Sbjct: 257 VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
E + E KF+G+NLY+KN+ +S D++L+E F+ FG ITSCK+MR P+G+SRG GFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVC 376
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAP 428
+S EEA+KA++EMNGKM+ ++PLYVALAQRK+ RR +L+ M+ A
Sbjct: 377 YSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQ--RNQLRLQQQAAAQ 434
Query: 429 GLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQ 488
G+G GP + PQPG PG QPG RP R + G M
Sbjct: 435 GMGY-----PGPGMYYPQPG------AFPG----------QPGGMVPRP--RYAPAGMMP 471
Query: 489 QAQQPIPLMQPRMLPRGRI---YR--YPP----------GCNIPDVPVAGVPGGMLPGPY 533
Q P QP P G + YR PP P GV G P
Sbjct: 472 QGMPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPTGVNGAPRPAGQ 531
Query: 534 DIGGMPF------RDAAFSQPMQTG-ALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
+ G P R A + Q G A+ALA ASPE+Q+ +LGE +YP V + + A
Sbjct: 532 PVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELA 591
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 627
K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q
Sbjct: 592 GKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQ 632
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 271/595 (45%), Positives = 357/595 (60%), Gaps = 71/595 (11%)
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+ TRRSLGY YVN+ +A RALD +NF + GKP+RIM+S RDP +RKSG GNIFIKN
Sbjct: 1 MITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPPLRKSGVGNIFIKN 60
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLN
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 119
Query: 195 DKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D++V VG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S VM
Sbjct: 120 DRKVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 179
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ
Sbjct: 180 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 239
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+
Sbjct: 240 QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSP 298
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR------------------- 413
EEA+KA+T MNG++V +KPLYVALAQRKEER+A L M+
Sbjct: 299 EEATKAVTGMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPA 358
Query: 414 PPVG----------PRMPMYPP------------VAPGLGQQLFYGQGPPIIP--PQPGF 449
PP G R YPP A G F I P P+P F
Sbjct: 359 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPF 418
Query: 450 GYQQQLVPGMRP-NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIY 508
MRP + VP V Q+ + G P A P + R +P+ Y
Sbjct: 419 S-------TMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ---Y 466
Query: 509 RYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRT 568
+Y G P + P + P A Q AS LA+A P++Q+
Sbjct: 467 KYAAGVRNPQQHLNAQPQVTMQQP-----------AVHVQGQEPLTASMLASAPPQEQKQ 515
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 516 MLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 570
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 112
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 113 MNGMLLNDRKVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 172
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 173 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 232
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 233 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 291
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 292 FVCFSSPEEATKAVTGMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 341
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 113/210 (53%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 142 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 198
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 199 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 258
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ +NG ++ K
Sbjct: 259 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTGMNGRIVATKP 317
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 318 LYVALAQRKEERQA-----HLTNQYMQRMA 342
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 272/612 (44%), Positives = 357/612 (58%), Gaps = 84/612 (13%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+S+SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVNY +A RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN TP+ GK RIM+S RDP++RKSG GN+FIKNLDK ID+KAL+DTFS FGNILSC
Sbjct: 68 LDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC 127
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD S+G+GFV ++ +ESA AI K+NGM++N ++VFVGPF +ER + +
Sbjct: 128 KVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTE-VK 186
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NV+ KNLSE D LK++ ++G IT+ +M D GKSK FGF NF+ + A VE
Sbjct: 187 FTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVE 246
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
NGK F K Y G+AQKK ERE ELK FE K++G+NLY+KN+DDSI +DK
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDNDK 299
Query: 338 LKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+E+FS+FGTITS VM+D S+G GFV ++ +EA++A+TEMNG+M+ +KPLYVAL
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVAL 359
Query: 397 AQRKEERRARLQF-SQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP---QPGFGYQ 452
AQRK+ RRA+L+ Q + G R M PP YG GP P P YQ
Sbjct: 360 AQRKDIRRAQLEMQHQQKFKTGIRQQM-PPT---------YGSGPVFFTPAPVNPQVVYQ 409
Query: 453 QQL------------VP-GMRPNYFVPMVQPGQQNQRPGG---RRSGTGPMQQAQQPIPL 496
Q + VP G N QP Q R G R++G P QPIP+
Sbjct: 410 QMMPRPRNWNGQPVGVPQGQYANMNYARGQPRQNGPRQNGGQPRQNGPRPDVSGAQPIPV 469
Query: 497 MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA--- 553
Q L D A +Q + A
Sbjct: 470 QQQTTL---------------------------------------DVAQTQQAASSAESA 490
Query: 554 --LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLE-MDQTEVLHLLESPEA 610
L S + S +QQ LGE+LYPL+ + D A K+TGMLL+ + E+ L + +
Sbjct: 491 LNLQSIINLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDL 550
Query: 611 LKAKVAEAMEVL 622
L K+ EA+EVL
Sbjct: 551 LADKIREALEVL 562
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ ++D S+++ +L ++F+Q G + S V +D S G+G+V Y A EAT
Sbjct: 280 KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA+ E+N + KP+ + + R
Sbjct: 340 RAVTEMNGRMIGTKPLYVALAQR 362
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 287/645 (44%), Positives = 385/645 (59%), Gaps = 75/645 (11%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +A R
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK IDNK+++DTFS FGNILS
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA D G S+GYGFV F+ EE+A++AI K+NGMLL K+VFVG F + +R +T
Sbjct: 149 CKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 208
Query: 217 --RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+F NVYVKN E +D L+K+F ++G ITS VM ++GKSK FGFV F +P++A
Sbjct: 209 AKKFTNVYVKNFGEHYNKDTLEKLFAKYGTITSCDVM-TSEGKSKGFGFVAFAEPEEAEA 267
Query: 275 SVEALNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+V+ALN + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD+S
Sbjct: 268 AVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDES 327
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ D+ LK+ F FG ITS KVM D NG S+G GFV F EEA+ A++EMN KMV SKPL
Sbjct: 328 VDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVSEMNSKMVCSKPL 387
Query: 393 YVALAQRKEERRARLQFSQMRPPVGPRMP-------MYPPVAPGLG--------QQLFYG 437
YVALAQRKE+RRA+L M+ RM MY P PG G QQ +
Sbjct: 388 YVALAQRKEDRRAQLASQYMQRLASMRMHTNVPGGGMYSPAQPGPGYYVANPMQQQRNFV 447
Query: 438 QGPPIIPPQPGFGYQQQL----------VPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPM 487
GP + P +G Q Q PG+ N M +P QNQ+ G R GP
Sbjct: 448 GGPQLARPGGRWGPQNQYPVQSQYMMAQGPGVYQNR---MGRP--QNQQGGPR----GPP 498
Query: 488 QQ----AQQPIPLMQPRMLPRGRIYRY------------------PPGCNIPDVPVAGVP 525
QQ AQ + + P +P + + P G P P
Sbjct: 499 QQYSQVAQGGVRMQGPPRVPNAGVQQQNVQRPPPQQLQQQQQRPAPSGPKAPPQPYNQQY 558
Query: 526 GGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLE--H 583
P IGG +P+ T L++ A+P++Q+ LLGE +Y L+++L H
Sbjct: 559 QQPRPQGIVIGG--------QEPLTTAMLSA----AAPQEQKQLLGERIYALIEKLYPGH 606
Query: 584 DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
+A K+TGM+LE+D +E++ +L+ + ++KV EA VL + +Q
Sbjct: 607 KDAGKITGMMLEIDNSELIMMLQDSDLFRSKVDEAASVLASAQKQ 651
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 279/620 (45%), Positives = 377/620 (60%), Gaps = 57/620 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + D L+D F++ + SVR+CRD S+ RSL YGYVN+ + +A+ A++
Sbjct: 12 ASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIE 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T L+GK IR+M+S+RDP R+SG GN+F+KNL SIDN L F FGNILSCKV
Sbjct: 72 AKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKV 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
G+S+GYGFVQF++EE A +AI+KLNG +++ KQ++ G F+RK +R ++
Sbjct: 132 VVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDRVLPNPDAKYT 191
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL TE+ L++ F EFG I S + +D +G S+ FGFVNF+ P+DA R++EAL
Sbjct: 192 NLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEAL 251
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + K YV +AQKK ERE L+ +FE+ E K+ G N+YVKN+DD+++DD L+
Sbjct: 252 NGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLR 311
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E FS G ITS K+MRD GIS+G GFV FST +EASKA+ +G M KPLYVA+AQR
Sbjct: 312 EHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQR 371
Query: 400 KEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQ-LVPG 458
KE+R+A+LQ + G P PV PG L+Y P +IPP+ G YQ L G
Sbjct: 372 KEDRQAQLQLHYAQRMAGLAGPS-TPVIPGGYPPLYYTAPPGVIPPRQGLMYQPLGLRTG 430
Query: 459 MRPNYFVPMVQPG-------------QQNQRPGGRRSGTGP---------MQQAQQPI-P 495
R N +P +P +Q+++ GR +G P M QQP P
Sbjct: 431 WRANNLIPPTRPAFQPSSIPLMPNTPRQHRQNRGRTNGHIPQGGGHSTAFMPHLQQPTQP 490
Query: 496 LMQP------------RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDA 543
++ P + +P GR Y G IP V G
Sbjct: 491 VISPKDSINQQRAGQAKYVPNGRSYEMSKGSGIPSAASNSVGTG---------------- 534
Query: 544 AFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLH 603
SQ + L+S LA ASPEQQ+ +LGE+LYPLV + + D AAK+TGMLLEMD +E+L
Sbjct: 535 --SQGSEM--LSSMLAAASPEQQKQILGEHLYPLVQKQKPDLAAKITGMLLEMDNSELLL 590
Query: 604 LLESPEALKAKVAEAMEVLR 623
LLESPE+L AKV EA++VL+
Sbjct: 591 LLESPESLAAKVEEAVQVLK 610
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 279/601 (46%), Positives = 386/601 (64%), Gaps = 32/601 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 134 TMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 193
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 194 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 252
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKNL E L+ +F +FG + S VMRD++G+S+ FGFVNF+ ++A ++V+
Sbjct: 253 FTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 312
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+D++
Sbjct: 313 HMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDER 372
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 373 LKEVFSAYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 431
Query: 398 QRKEERRARL--QF-SQMRPPV-----GPRMPMYPPVAPGLGQQLFYGQGPPI-IPPQPG 448
QRKEER+A L Q+ Q+ PV P + V+ Q ++YG G + P P
Sbjct: 432 QRKEERKAILTNQYRRQLSRPVLSSFQQPTNYLLSAVSQSTAQAVYYGSGSMAPMQPDPR 491
Query: 449 FGYQQQLVPGMRPNYFVP----MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+ Q P+ P +VQP Q P R QA +P Q R++
Sbjct: 492 WAVQPH-----GPSSTCPPAASVVQPLGTMQHP---RVHLNNASQASSQVPHTQ-RVVNI 542
Query: 505 GRIYRYP--PGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANAS 562
G GC+IP P+ G + G+ ++ A P S LA A
Sbjct: 543 GTQTTGSGGEGCSIPGQPLLTHRGS--SAVHSAHGV--QEPAVYVPGHQPLTVSMLAAAP 598
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
+Q+ ++GE LY L+ K+TGMLLEMD E+L LLESPE+L AK+ EA+ VL
Sbjct: 599 LHEQKQMIGERLYSLIQDTCAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAVL 658
Query: 623 R 623
R
Sbjct: 659 R 659
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 167/311 (53%), Gaps = 18/311 (5%)
Query: 106 LNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SL 164
L G P + DP + ++++ +L + L++ FS G ILS +V D +
Sbjct: 52 LLGDPFLGALNTMDPGGQACALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVAT 111
Query: 165 GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVK 224
+S GY ++ F A+ A+D +N ++ + + + R+ K+ N+++K
Sbjct: 112 RRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRI----MWSHRDPGLRKSGMGNIFIK 167
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NL + L F FG I S+ V+ + G S+ FGFV+F+ + A +++ +NG
Sbjct: 168 NLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL 226
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
+D++ +VG + + +RE EL + +L T N+YVKNL + + L++LFS+
Sbjct: 227 NDRKVFVGHFKSRQKREAELGAR---ALGFT-------NVYVKNLHMDMDEQGLQDLFSQ 276
Query: 345 FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
FG + S KVMRD NG SRG GFV F EEA KA+ MNGK V + LYV AQ++ ER+
Sbjct: 277 FGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQ 336
Query: 405 ARLQ--FSQMR 413
+ L+ F Q++
Sbjct: 337 SELKRRFEQVK 347
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 25/211 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + +++ L DLF+Q G++ SV+V RD S +S G+G+VN+ E
Sbjct: 248 ARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRD-SNGQSRGFGFVNFEKHEE 306
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N + G+ + R ++ R G N+++KNLD
Sbjct: 307 AQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGV-NLYVKNLD 365
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI+++ L + FS +G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 366 DSINDERLKEVFSAYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 424
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y + LS
Sbjct: 425 PLYVALAQRKEER-----KAILTNQYRRQLS 450
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 279/705 (39%), Positives = 395/705 (56%), Gaps = 127/705 (18%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+L+ V ++ L++LF+ +G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T +NG+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 179 KVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ ++D+ + +F ++G +TS+++ RD +GKS+ FGFVNF + A+++
Sbjct: 239 ANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQA 298
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LNGK F ++ YVG+AQKK+ERE EL+ +E + +E A+K++G+NLY+KNL D + D
Sbjct: 299 VEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARQEKANKYQGVNLYIKNLSDDVDD 358
Query: 336 DKLKELFSEFGTITSCKVMRDPN------------------------------------- 358
+KL+ +FSEFG ITS KVMRD
Sbjct: 359 EKLRAMFSEFGPITSAKVMRDSISEGEDEEKAEEETPAPEAEVKKEDSEADADSQEAADK 418
Query: 359 ----------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G S+G GFV FS E+A+KA+ +MN +M+ +KPLYVALAQRK+ R+ +L+
Sbjct: 419 KDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLE 478
Query: 409 FS-QMRPPVGPRMPMYPPVA-PGLGQQLFYGQGPPIIP-PQPGFGYQQQLVPGMRPNYFV 465
S Q R +M M A G+ Q Q P P QPGF Q PN +
Sbjct: 479 QSIQAR----NQMRMQSAAAQAGMPNQFM--QQPVYFPGQQPGFLPQGGRGMPFPPNMGM 532
Query: 466 PMVQPGQQNQRPGG--RRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPG-----CNIPD 518
P +Q G+ Q P G ++ G G QQ + P M G ++PPG N P
Sbjct: 533 PNIQGGRPGQYPAGFPQQGGRGIPQQ-------LPPNMY--GVPGQFPPGGFPAQANNPQ 583
Query: 519 V----------------------PVAGVPGGMLPGPYDIGGMPFRDAAF----------- 545
P+ G+P G + GP G P R
Sbjct: 584 FMAAMQQVQQASMGGGRGQGGRGPMQGMPAGPM-GPGAPGYPPNRQQPGQAGGRGGRNGQ 642
Query: 546 ------------------SQPMQTGALASALANAS-PEQQRTLLGENLYPLVDQLEHDNA 586
+ P A+ L NA+ QQ+ ++GE ++P + + + A
Sbjct: 643 QGNFPPQGGRGAPGAGENTPPQGLSAIQLQLNNATDARQQKQIIGELIFPKIAAQQPELA 702
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
K+TGMLLEM+ +E++ L+E A+K KV EA+ V + Q T
Sbjct: 703 GKITGMLLEMENSELITLIEDDNAMKLKVDEALGVYEEYVKNQGT 747
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 280/629 (44%), Positives = 385/629 (61%), Gaps = 74/629 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVN+ A + RA++
Sbjct: 45 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 104
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LN++ + +P RIM+S RDP +R++G GNIFIKNLD IDNKALHDTF+ FGNILSCKV
Sbjct: 105 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKV 164
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR-- 217
AT+ G S GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER++ +++R
Sbjct: 165 ATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAK 223
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY KN+ T++ +K+F +G ITS + RD DGKSK FGFVNF+D ++A ++V+
Sbjct: 224 FTNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVD 283
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+ F ++ +V +AQKK ERE EL+ +E + E KF+G+NLY+KN+ +S D++
Sbjct: 284 ELHDSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 343
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E F+ FGTITSCK+MR P+G+SRG GFV +S EEA+KA++EMNGKM+ ++PLYVALA
Sbjct: 344 LREEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALA 403
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
QRK+ RR +L+ M+ A G+G GP + PQPG P
Sbjct: 404 QRKDVRRQQLEAQIMQ--RNQLRLQQQAAAQGMGY-----PGPGMYYPQPG------AFP 450
Query: 458 GMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRI---YR----- 509
G QPG RP R + G M Q P QP P G + YR
Sbjct: 451 G----------QPGGMVPRP--RYAPAGMMPQGMPMAPYGQPGQFPAGMMPQGYRPARPP 498
Query: 510 --------------------------YPPGCNIPDVPVAGVPGGMLPG-PYDIGGMPFRD 542
P G +P P+ PG G P ++ G P
Sbjct: 499 RGAPNAAGGPAPPAGARPPAGVNGAPRPAGQPVPGQPMPRGPGARPAGRPQEVAGQP--- 555
Query: 543 AAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVL 602
A+ALA ASPE+Q+ +LGE +YP V + + A K+TGM+LE+ TE+L
Sbjct: 556 --------GTLTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELL 607
Query: 603 HLLESPEALKAKVAEAMEVLRNVAQQQAT 631
HLLE EAL AKV EA+EVL+ Q + T
Sbjct: 608 HLLEEQEALDAKVNEALEVLKEYQQNETT 636
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 267/627 (42%), Positives = 365/627 (58%), Gaps = 60/627 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD +TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIF+KNLD+SID+K L+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E A+ AI+K+NGM LND++VFVG F +++R++ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KNL E ++ L+ +F FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKF----------EQSLKETADKFEGLNLYVKN 328
+NGK + K+ YVG+AQKK ER+ ELK KF EQ ++ + + +G+NLYVKN
Sbjct: 251 MNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKN 310
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LDD I D++L++ FS FGTITS KV + G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 311 LDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 369
Query: 389 SKPLYVALAQRKEERRARLQFSQMR----------PPVGPRMP-------MYPPVAPGLG 431
+KPLYVALAQRKEER+A L M+ P + P P AP
Sbjct: 370 TKPLYVALAQRKEERQAHLSNQYMQRMASTSAVPNPGINPFQPAQGLSGYFMTATAPTQN 429
Query: 432 QQLFYG------QGPPIIPPQPGFGYQ--QQLVPGMRPNYFVP-MVQPGQQNQRPGGRRS 482
+ +Y QGP G Q + + P+ +P G + + R+
Sbjct: 430 RGTYYAPNQTTQQGPSARGSAQGTRAHPFQNMSSAIHPSNTMPSFSTSGPTSSQAVRHRT 489
Query: 483 GTGPMQQAQQPIPLMQPRMLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMP 539
+ Q P R Y+Y G P P + P
Sbjct: 490 ASTSTQMMGPHPAAASTAAAPAARTVTQYKYTAGVRNP--------------PQHLNTQP 535
Query: 540 ---FRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEM 596
+ +A S + S LA+A P+ Q+ +LGE L+ L+ + A K+TGMLLE+
Sbjct: 536 QVTTQRSAVSAQGKESLTVSMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEI 595
Query: 597 DQTEVLHLLESPEALKAKVAEAMEVLR 623
D E+ H+LESPE L KV EA+ VL+
Sbjct: 596 DNLELRHMLESPECLHTKVDEAIAVLQ 622
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 37/224 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ +L ++D +L DLF++ G +SV+V D S +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESG-KSKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR---------------------------DPTIRKSG 126
A +A+DE+N LNGK I + + + D ++R G
Sbjct: 244 ARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQG 303
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+
Sbjct: 304 V-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVT 361
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
++NG ++ K ++V RK+ER++ +N Y++ ++ T+
Sbjct: 362 EMNGRIVATKPLYVALAQRKEERQA-----HLSNQYMQRMASTS 400
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/437 (53%), Positives = 306/437 (70%), Gaps = 20/437 (4%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL +V++ QL+ LF+Q+ V +VRVCRD+ + SLGYGYVN+ + EATRAL+
Sbjct: 2 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNFTPL GK IR+M+S RDP++RKSG N+F+KNL+ +ID+K L++ FS+FG ILSCKV
Sbjct: 62 ALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATDS GQS+GYGFVQ++ EESA++AI+ LNGML N++++FVG +R+++RE +F
Sbjct: 122 ATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDRE-----VKFT 176
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVY+KNL +EDDL++ F FG ITS VMRDADG SKCFGFVNF P+ A +VE
Sbjct: 177 NVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKA 236
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGK DK YVG+AQKK ER+ ELK +F + DK G+NLY+KN+DD I+D+ LK
Sbjct: 237 NGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLK 296
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+LF EFG + SCKVM D G S+GSGFV+F+TAE +A+ MNG++V KPLYV LAQ
Sbjct: 297 KLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQP 356
Query: 400 KEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGP---PIIPPQPG-FGYQQ 453
KEER+A L F+Q + P QQ+++G PI PPQ FG+ Q
Sbjct: 357 KEERKAMLMAHFAQRNLAMAASQYAGP-------QQVYFGHPSSPGPIAPPQGAVFGFPQ 409
Query: 454 QLVPGMRPNYFVPMVQP 470
VPGM P P++ P
Sbjct: 410 HFVPGMGP--ISPVMMP 424
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 17/193 (8%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ T++Y+ +L ++ L F G++ S V RD + S +G+VN+ A
Sbjct: 171 REVKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRD-ADGASKCFGFVNFKKPEFA 229
Query: 95 TRALDELNFTPLNGKPIRIMYSY----------------RDPTIRKSGAGNIFIKNLDKS 138
A+++ N + K + + + RD + K N+++KN+D
Sbjct: 230 IEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDG 289
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
I+++ L F FG + SCKV D+ G+S+G GFV F E+ + AI+++NG ++ K +
Sbjct: 290 INDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPL 349
Query: 199 FVGPFLRKQERES 211
+VG K+ER++
Sbjct: 350 YVGLAQPKEERKA 362
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/542 (48%), Positives = 338/542 (62%), Gaps = 77/542 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 46 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KN+ + T+++ +K+F +FG ITS + RD +GKS+ FGFVNF D
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN--------------------------------- 358
+ D+KL+ELFS FGTITS KVMRD
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKES 405
Query: 359 ------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++
Sbjct: 406 EEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 465
Query: 407 LQFS-QMRPPVG----------PRMPMYPPVAPGLGQQLFY--GQ-GPPIIPPQPGFGYQ 452
L+ S Q R + P+ M P V G GQQ F GQ G PQPG
Sbjct: 466 LEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGM--- 522
Query: 453 QQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQ---QPIPL--MQ-PRMLPRGR 506
+PG RP + P PGQQ GGR G GP QQ Q IP+ MQ P +P G
Sbjct: 523 VMGIPGGRPGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFQGIPMGAMQGPGGIPNGM 575
Query: 507 IY 508
Y
Sbjct: 576 GY 577
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KN+D ++D++ +++F +FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FST + A A+ EMN K + + LYV AQ+K ER L+
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 551 TGALASALANA-SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
TG L + NA P QQ+ +LGE LYP + + + A K+TGMLLEMD TE+L LLE E
Sbjct: 646 TGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEE 705
Query: 610 ALKAKVAEAMEVLRNVAQQQATGPSPTD 637
AL+AKV EA+ V + + G +P +
Sbjct: 706 ALRAKVDEALSVYDEYMKNKGEGEAPAE 733
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/448 (52%), Positives = 306/448 (68%), Gaps = 13/448 (2%)
Query: 20 PATNGIA----NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
P TN +A N G +A S ++YVGDL VN++ L+++F+ +G V SVRVCRD+
Sbjct: 53 PDTNKVAAATRNIGTETNAPSVSSATIYVGDLHPEVNEANLFEVFSAIGPVASVRVCRDI 112
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPL---NGKPIRIMYSYRDPTIRKSGAGNIFI 132
TRRSLGY YVN+++ +A RAL+ +NF KP+R+M+ RDPTIRKSGAGN+FI
Sbjct: 113 VTRRSLGYAYVNFHSMDDAERALETMNFYACPQTRDKPMRLMWKNRDPTIRKSGAGNVFI 172
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDK+IDNK L DTFS FGNILSCKVATD G S GYGFV F+N E A++AI+K+NGML
Sbjct: 173 KNLDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGML 232
Query: 193 LNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL-SETTTEDDLKKIFGEFGIITSTAVM 251
LNDKQV+VG F +QERE++ + F NVY KNL TE+ ++++F +G ITS V
Sbjct: 233 LNDKQVYVGYFKSRQEREASEETHIFTNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVP 292
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
D + K F FVNF P+ AA++VE LNG+ F+ K YVG+AQKK ERE EL+ K E
Sbjct: 293 VDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAELRRKAENK 352
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371
E K++G+NLYV+NL D + ++ L++ FS FGT+TSC+VMRD G+SRG GFV FST
Sbjct: 353 RAEILKKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFST 412
Query: 372 AEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLG 431
EEA+KA+TEMNGKM+ KPLYV LAQRKE R+A+L+ ++ G P PG
Sbjct: 413 PEEATKAVTEMNGKMMGKKPLYVCLAQRKEIRQAQLEAQRIAAAAGGL--RIPGAVPG-- 468
Query: 432 QQLFYGQGPPIIPPQPGFGYQQQLVPGM 459
L+ G P+ PQPG Q QL M
Sbjct: 469 -SLYPQPGAPMFYPQPGVPPQMQLQTNM 495
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 60/79 (75%)
Query: 551 TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEA 610
+ +L + L NASPEQQ+ +LGE LYPL+ + + A K+TGMLLEMD +EVLHL+ESP+A
Sbjct: 695 SASLIALLTNASPEQQKQILGERLYPLIYERQPGLAGKITGMLLEMDNSEVLHLIESPDA 754
Query: 611 LKAKVAEAMEVLRNVAQQQ 629
L K+ EA+ VLR A+QQ
Sbjct: 755 LSEKIEEALAVLRAHAEQQ 773
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 266/632 (42%), Positives = 383/632 (60%), Gaps = 64/632 (10%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
APVA + +G S SLYVG+L+ SVN++ L+++F+ +GQV S+
Sbjct: 21 APVASTEETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASI 80
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD T++SLGY YVN++ + +A+++LN++ + G+P RIM+S RDP++R++G GN
Sbjct: 81 RVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGN 140
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNL +IDNKALHDTF+ FG ILSCKVATD +G S+ +GFV ++ E+A++AI+ +N
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVN 200
Query: 190 GMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLND++V+VG + K++RES + K F NVY KN+ +E++ KK+F +G ITS
Sbjct: 201 GMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITS 260
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ +D +GKSK FGFVNF++ + A ++V+ LN K+ + ++ YVG+AQKK ER ELK +
Sbjct: 261 IYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQ 320
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
+E + E K++G+NL++KNLDD+I +KL+E F FG+ITS +VM D G S+G GFV
Sbjct: 321 YENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFV 380
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVA 427
FS+ EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q++ RM
Sbjct: 381 CFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLE-QQIQARNQMRMQNAAATG 439
Query: 428 PGLGQ---QLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT 484
GQ +FYGQ P PP GR +G
Sbjct: 440 GIPGQFIPPMFYGQQPGFFPPN--------------------------------GRGNGP 467
Query: 485 GPMQQAQQPIPLMQPRMLPRGRI----YRYP-PGCNIPDVPVAGVP--------GGMLPG 531
P P P M M+PRG+I ++P PG N VPV G+P G G
Sbjct: 468 FP-----GPNPQM---MMPRGQIPPPQGQWPRPGPNGQPVPVYGMPPVYGGDFNNGANGG 519
Query: 532 PYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV----DQLEHDNAA 587
G P R+ + Q LA+ +ANA +QQ+ +LGE LYP + E + A
Sbjct: 520 RQQRGYYPNRNQN-QKGRQQKDLAAIIANAPADQQKRILGEELYPKIVSTGKAQEPEAAG 578
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
K+TGM+L++D E+L LLE E +A+
Sbjct: 579 KITGMMLDLDNEEILALLEDDELFNTHFEDAL 610
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 284/671 (42%), Positives = 387/671 (57%), Gaps = 71/671 (10%)
Query: 9 QAPVAVAAQPSPATN-GIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
Q P A Q P TN G N + SLY+GDL V +S L++ F+ G V+
Sbjct: 36 QPPAAAIQQGPPQTNIGYPPNA------TYSMASLYIGDLHGDVTESMLFEKFSMAGPVL 89
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRD ++R SLGY YVN+ +A RALD +NF ++G+P+RIM+S RDP R++G
Sbjct: 90 SIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEIIHGRPMRIMWSQRDPAARRAGN 149
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GNIFIKNLD+ IDNK+++DTFS FGNILSCKVATD G S+GYGFV F+ E SA++AI+K
Sbjct: 150 GNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEK 209
Query: 188 LNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLL+DK+VFVG F + +R E ++ NV+VKN E E LK++F ++G I
Sbjct: 210 VNGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDEAKLKEMFSKYGEI 269
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE--WYVGKAQKKYEREME 303
S VM DA+GK K FGFV + DP+ A+++V+ LN + E V +AQKK ER E
Sbjct: 270 NSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVCRAQKKSERSAE 329
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
LK K+E +E +++G+NLYVKN+++ ++D+ L+ F++FGTITS KVM D NG S+G
Sbjct: 330 LKRKYEALKQERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKG 389
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMY 423
GFV F EEA+ A+TEMN KM+ +KPLYVALAQRKE+RRA+L M+ RM
Sbjct: 390 FGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQ 449
Query: 424 PPVA-PGL------GQQLFYGQGPPIIPPQPGFGYQQQLVPGMRP------NYFVPMVQP 470
PG+ GQQ +Y P P +P F Q Q P P N V M P
Sbjct: 450 AAGGVPGMTQIYQPGQQGYYVPNPMAAPGRPAF--QPQAAPMRGPPGQRMFNNQVFMQYP 507
Query: 471 GQQNQRPGGRRSGTGPM--QQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPV---AGVP 525
Q QR G + G PM Q +Q M PR P G PG + P+ G P
Sbjct: 508 FNQ-QRQGFPQQGRPPMRTQDGRQQYG-MAPR--PNGPPRVGGPGAQMGGAPIRQQGGAP 563
Query: 526 GGMLPG-----PYDIGGMPFR---------------------------DAAFSQPMQTGA 553
G G PY G P R ++ Q
Sbjct: 564 RGATHGAPQQKPYYQG--PPRQHHPVQQHSQHAPQQQQQQQQQQQQPGNSGIVIHGQETL 621
Query: 554 LASALANASPEQQRTLLGENLYPLVDQL--EHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
+ LA A+P++Q+ LLGE +Y L++++ H +A K+TGM+LE+D E++ +L+ +
Sbjct: 622 TSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKDAGKITGMMLEIDNAELIMMLQDADLF 681
Query: 612 KAKVAEAMEVL 622
++KV EA VL
Sbjct: 682 RSKVEEAFTVL 692
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 278/650 (42%), Positives = 385/650 (59%), Gaps = 77/650 (11%)
Query: 7 QPQAPVAVAAQPSPA---TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
QP A A Q + ++G+A N S SLYVG+L+ SVN++ L+++F+ +
Sbjct: 25 QPAAATTTADQSAEEQGESSGVAEN----------SASLYVGELNPSVNEATLFEIFSPI 74
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD +++SLGY YVNY+ + +A++ELN+TP+ G+P RIM+S RDP+ R
Sbjct: 75 GQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYTPIEGRPCRIMWSQRDPSAR 134
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
+SG GNIFIKNL +IDNKALHDTFS FG ILSCKVA D GQS+ +GFV ++ E+A++
Sbjct: 135 RSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKCFGFVHYETAEAAEA 194
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI+ +NGMLLND++VFVG + K++RES + K F N+YVKN+ +E+ +K+F
Sbjct: 195 AIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFAP 254
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
+G ITS + +D DGKSK FGFVNF++ D A ++VE LN K+ + ++ YVG+AQKK ER
Sbjct: 255 YGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQKIYVGRAQKKRERL 314
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
ELK ++E + E K++G+NL+VKNLDD+I +KL+E F FGTITS KVM D G S
Sbjct: 315 EELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGKS 374
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL-QFSQMRPPVGPRM 420
+G GFV F+T EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L Q Q R +M
Sbjct: 375 KGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQAR----NQM 430
Query: 421 PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGR 480
M A GL Q PP+ Q GF P P GR
Sbjct: 431 RMQNAAAGGLPGQFM----PPMFYGQQGF------FP-------------------PNGR 461
Query: 481 RSGTGPMQQAQQPIPLMQPRMLPRGRIYRYP-----PGCNIPDVPVAGVP-------GGM 528
P P P+M+ RGR +P PG N VPV G+P G
Sbjct: 462 ---------GNAPYPGPNPQMMMRGRGQPFPEQWPRPGPNGQPVPVYGIPPQFQQDFNGQ 512
Query: 529 LPGPYDIGGMPFRDAAFSQPMQTGA--LASALANASPEQQRTLLGENLYPLV----DQLE 582
P P R + QT LA+ +++ +QQ+ +LGE LYP + E
Sbjct: 513 NMRPQQQQQQP-RGGYYPNRNQTNKRDLAAIISSVPQDQQKRILGEELYPKIVATGKAQE 571
Query: 583 HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
+ A K+TGM+L ++ E+L LL+ E +A+ + +A G
Sbjct: 572 PEAAGKITGMMLGLENQEILDLLDDDELFNNHFEDALTAFEEYKKSEAAG 621
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/436 (54%), Positives = 308/436 (70%), Gaps = 22/436 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRDL TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF P+ G+PIRIM+S RDP++RKSG GN+FIKNLDK IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDPIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D GQS+GYGFV F+ EESA ++I+K+NGMLLN+K+V+VG F+ ++ERE +K + F
Sbjct: 123 QDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E TE+ L+ +F +FG ITS VM DGKS+ FGFV F+ P+DA +V+
Sbjct: 183 TNVYVKNFGEDLTEEALRDMFEKFGPITSHRVM-TKDGKSRGFGFVAFEKPEDAEEAVQK 241
Query: 279 LNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ D K YVG+AQKK ER+MELK +FEQ E ++ G+NLYVKNLDD+I D++
Sbjct: 242 LNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDER 301
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ +GTITS KVM D G S+G GFV FS +EA+KA+TEMNG++V SKPLYVALA
Sbjct: 302 LRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALA 360
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPV--------APGLGQ-QLFYGQGPPIIPPQ-- 446
QRKEER++ L ++ RM V P + Q Q FY GP + P +
Sbjct: 361 QRKEERKSHLASQYIQRVNSLRMQHIGQVYQQSGSYFMPTIAQPQRFY--GPQVAPVRTA 418
Query: 447 PGFGYQQQLVPGMRPN 462
P + Q MRPN
Sbjct: 419 PRWSANAQ----MRPN 430
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 22/190 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRAL 98
T++YV + + + L D+F + G + S RV +D +R G+G+V + +A A+
Sbjct: 183 TNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMTKDGKSR---GFGFVAFEKPEDAEEAV 239
Query: 99 DELNFTPL-NGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
+LN L +GK + R + + + N+++KNLD +ID+
Sbjct: 240 QKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDD 299
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
+ L F+ +G I S KV D G+S+G+GFV F + A A+ ++NG ++ K ++V
Sbjct: 300 ERLRKEFAPYGTITSAKVMLDE-GRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVA 358
Query: 202 PFLRKQERES 211
RK+ER+S
Sbjct: 359 LAQRKEERKS 368
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S LA A P +Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LE E+L AK
Sbjct: 557 SMLAAAQPAEQKQMLGERLFPLIELMYPNLAGKITGMLLEIDNSELLHMLEHKESLNAKA 616
Query: 616 AEAMEVLRNVAQQQATGPS 634
EA+ VL+ A Q+++ +
Sbjct: 617 EEAVAVLQ--AHQKSSAQT 633
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V D RS G+G+V ++A EAT
Sbjct: 282 RYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEG--RSKGFGFVCFSAPDEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
+A+ E+N + KP+ + + R RKS + +I+ ++
Sbjct: 340 KAVTEMNGRIVGSKPLYVALAQRKEE-RKSHLASQYIQRVN 379
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 294/725 (40%), Positives = 392/725 (54%), Gaps = 154/725 (21%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 53 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 112
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 113 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 172
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 173 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 232
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL T ++ +++F ++G ITS ++ RD + GKS+ FGFVNF + D AA +
Sbjct: 233 NFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAA 292
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K++ ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 293 VEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 352
Query: 336 DKLKELFSEFGTITSCKVMRDPNG------------------------------------ 359
+KL++LF FG ITS +VMRD G
Sbjct: 353 EKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEK 412
Query: 360 ----------------ISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
+ + GF V FS +EASKA+TEMN +MV KPLYVALAQRK+
Sbjct: 413 TDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 402 ERRARLQFS----------QMRPPVGPRMP-MYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
R+++L+ S Q+ G P M P V GQQ F P + G
Sbjct: 473 VRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFI----PANAQRGGMA 528
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPG-----GRRSGTGPMQQ--------AQQPIP-- 495
+ QQ PGM +P + G+ Q PG G R GP QQ Q +P
Sbjct: 529 FAQQ--PGM----VLPGMPGGRPGQYPGGFPQQGGRGLAGPNQQLPPNAFGMGAQGLPIG 582
Query: 496 -LMQPRMLPRGRIY------------------RYPPGC-----NIPDVPVAGVPGGMLPG 531
L P +P G Y + PG N+ +VP G+ G PG
Sbjct: 583 ALQGPGGIPNGLTYPQAIAQVQASFGRGGGGRGHVPGMQGMPPNMGNVP--GMRGAGGPG 640
Query: 532 -PYDIGGMP-------------------------------FRDAAFSQPMQ---TGALAS 556
GGMP D A + +G
Sbjct: 641 FTQGRGGMPPQGAGGMGGRPGQAGRGGAGGVGGPVPGMPPRDDGAGVVGVGVGPSGLNLQ 700
Query: 557 ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 616
A + A P QQ+ +LGE +YP + + + A K+TGMLLEMD E+L L++ AL+AKV
Sbjct: 701 AFSAAPPAQQKQMLGEAIYPKIQVQQPELAGKITGMLLEMDNAELLSLVDDDAALRAKVD 760
Query: 617 EAMEV 621
EA+ V
Sbjct: 761 EAINV 765
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 154/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
PT + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKNL+ +++++ +ELF ++G ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNE 271
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV F + A+ A+ ++N K + LYV AQ+K ER L+
Sbjct: 272 TGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELR 322
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 269/638 (42%), Positives = 379/638 (59%), Gaps = 71/638 (11%)
Query: 15 AAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
+A+ ++G+A N S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD
Sbjct: 37 SAEEQGESSGVAEN----------SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRD 86
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+++SLGY YVNY+ + +A++ELN+ P+ G+P RIM+S RDP+ R+SG GNIFIKN
Sbjct: 87 AVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKN 146
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
L +IDNKALHDTFS FG ILSCKVATD GQS+ +GFV ++ E+A++AI+ +NGMLLN
Sbjct: 147 LHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLN 206
Query: 195 DKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D++VFVG + K++RES + K F N+YVKN+ +E+ +K+F FG ITS + +
Sbjct: 207 DREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEK 266
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D DGKSK FGFVNF+D + A ++VE LN K+ + ++ YVG+AQKK ER ELK ++E
Sbjct: 267 DQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVR 326
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
E K++G+NL+VKNLDD+I +KL+E F FGTITS KVM D G S+G GFV F+T
Sbjct: 327 LEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTP 386
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQ 432
EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q++ RM
Sbjct: 387 EEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLE-QQIQARNQMRM------------ 433
Query: 433 QLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQ 492
Q G P F+P + GQQ P P +
Sbjct: 434 --------------------QNAAAGGLPGQFIPPMFYGQQGFFP--------PNGRGNA 465
Query: 493 PIPLMQPRMLPRGRIYRYP-----PGCNIPDVPVAGVP-------GGMLPGPYDIGGMPF 540
P P P+M+ RGR +P PG N VPV G+P G P
Sbjct: 466 PYPGPNPQMMMRGRGQPFPEQWPRPGPNGQPVPVYGIPPQFQQDFNGQNMRPQQQQQQQP 525
Query: 541 RDAAFSQPMQTGA--LASALANASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLL 594
R + QT LA+ +++ +QQ+ +LGE LYP + E + A K+TGM+L
Sbjct: 526 RGGYYPNRNQTSKRDLAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMML 585
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
++ E+L LL+ E +A+ + +A G
Sbjct: 586 GLENQEILDLLDDDELFNNHFEDALTAFEEYKKSEAAG 623
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 33 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 92
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 93 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 152
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 153 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 211
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E +D+LK++F +FG S VMRD GKSK FGFV+++ +DA ++VE
Sbjct: 212 FTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 271
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+K
Sbjct: 272 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 331
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALA
Sbjct: 332 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 390
Query: 398 QRKEERRARLQFSQMRPPVGPR 419
QRKEER+A L M+ G R
Sbjct: 391 QRKEERKAHLTNQYMQRVAGMR 412
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S +S G+G+V+Y +
Sbjct: 209 AKEF--TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSG-KSKGFGFVSYEKHED 265
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 266 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 325
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 326 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 384
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 385 LYVALAQRKEER-----KAHLTNQYMQRVA 409
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 593 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 652
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 653 VDEAVAVLQ 661
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 275/666 (41%), Positives = 376/666 (56%), Gaps = 73/666 (10%)
Query: 11 PVAVAAQPSPATN-GIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
P AV Q P TN G N + SLY+GDL V+++ L++ F+ G V+S+
Sbjct: 33 PQAVIQQGPPPTNIGYPPNA------TYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSI 86
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD ++R SLGY YVN+ +A RALD +NF ++G+P+RIM+S RDP R++G GN
Sbjct: 87 RVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGN 146
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLD+ IDNK+++DTFS FGNILSCKVATD G S+GYGFV F+ E SA++AI+K+N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 190 GMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLL+DK+V+VG F + +R E ++ NV+VKN E ++ L +F +FG ITS
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITS 266
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMELK 305
VM DA GK K FGFV F D D A ++VE LN + D + V +AQKK ER ELK
Sbjct: 267 AVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELK 326
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
K+E +E +++G+NLYVKN+++ ++DD L++ FS FGTITS KVM D NG S+G G
Sbjct: 327 RKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFG 386
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPP 425
FV F EEA+ A+T+MN KM+ +KPLYVALAQRKE+RRA+L M+ RM
Sbjct: 387 FVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQAS 446
Query: 426 VAPGL------GQQLFYGQGPPIIPPQPGFGYQQQLVPG------------MRPNYFVPM 467
P + GQQ ++ P +PGF Q + G M+ +
Sbjct: 447 GVPAMTQLYQPGQQGYFVPNPMNAQGRPGFQPQSAQIRGPPGQRVFQNQMFMQYPFNQRQ 506
Query: 468 VQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVP-G 526
V P QQ + P R+ G Q P P PR+ P V + G P
Sbjct: 507 VYPQQQGRPP--MRTNDGRPQYGMAPRPAGAPRV-------------GGPGVQMGGAPIR 551
Query: 527 GMLPGPYDIGGMPFRDAAFSQPM--------------------------QTGALASALAN 560
P P PF Q Q + LA
Sbjct: 552 QQGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQSGIVIHGQETLTSHMLAQ 611
Query: 561 ASPEQQRTLLGENLYPLVDQL--EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
A+P++Q+ LLGE +Y L++++ H A K+TGM+LE+D E++ +L+ E ++KV EA
Sbjct: 612 AAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAELFRSKVEEA 671
Query: 619 MEVLRN 624
VL N
Sbjct: 672 FGVLTN 677
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 270/639 (42%), Positives = 370/639 (57%), Gaps = 114/639 (17%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGI-ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDL 59
+ ++ +Q + P A +PAT I A + V + V+ SLYVG+LD SV+++ LYD+
Sbjct: 12 LEKLNIQDEQPAA-----TPATTAIEAESPNVEN----VTASLYVGELDPSVSEALLYDI 62
Query: 60 FNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119
F+ +G V S+RVCRD T+ SLGY YVN+N A+++LN+T + G+P RIM+S RD
Sbjct: 63 FSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKLNYTAIKGRPCRIMWSQRD 122
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179
P++RK G+GNIFIKNL IDNK L++TFS FGNILSCK+A D G+S+G+GFV F+NEE
Sbjct: 123 PSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEE 182
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKK 237
+A+ AID +NGMLLN ++V+V P + K++R+S D+ R F NVYVKNL TE+D +
Sbjct: 183 AAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFEN 242
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
+F +G ITS A+ +DA+GKS+ FGFV+F++ +DA ++VEALN ++ + YVG+AQKK
Sbjct: 243 LFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKK 302
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
YER ELK +++ S E K++G+NL++KNLDDSI D+KLKE F+ FGTITS +VMR
Sbjct: 303 YERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTE 362
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL-----QFSQM 412
NG S+G GFV FST EEA++A+TE N ++V KPLYVA+AQRK+ RR++L +QM
Sbjct: 363 NGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQM 422
Query: 413 R----------PPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPN 462
R G PP +FYG ++PP+ GM N
Sbjct: 423 RYQQATAAAAAAAAGIPGQFMPP--------MFYG----VVPPR-----------GMPFN 459
Query: 463 YFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVA 522
G Q+ GG M P+ G Y PP
Sbjct: 460 --------GPNPQQLGG-----------------MPPQQFRNGPAYGMPP---------- 484
Query: 523 GVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLE 582
P G G P D F Q Q R LGE LY V
Sbjct: 485 --PQG---------GFPRNDNQFYQQKQ----------------RQALGEQLYKKVSAKT 517
Query: 583 HDN--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
D A K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 518 SDEEAAGKITGMILDLPAQEVVPLLENDELFEQHFNEAF 556
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/604 (43%), Positives = 363/604 (60%), Gaps = 44/604 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL ++DSQL+D F+ + SVR+CRD S+ +SL YGYVN+ + H+A RA++
Sbjct: 11 SLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEV 70
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
N + LNGK IR+M+S RDP RKS GN+F+KNL +SIDN L D F FGNILS KV
Sbjct: 71 KNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVV 130
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
G+S+GYGFVQF+ EESA +AI++LNG L+ DKQ++VG F++K +R S+ TR+ N
Sbjct: 131 MSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTN 190
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL +E L++ F FG I S AV +D++G SK FGFVNFD+P+DA R++E +N
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMN 250
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G + K YV +AQKK ERE L +FE+ KE K++G N+YVKN+DD++SD+ L++
Sbjct: 251 GLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRD 310
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS GTITS K+MRD GIS+G GFV FST EEA+KA+ +G M KPLYV+LAQRK
Sbjct: 311 HFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRK 370
Query: 401 EERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPII---PPQPGFGYQ-QQLV 456
E+R+A+LQ + G P + PG G FY ++ PP+ G YQ L
Sbjct: 371 EDRQAQLQLQYAQQIAGLAGPS-TAIVPG-GYPPFYYTATGVVSHAPPRAGLVYQPMALR 428
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
PG R N P + QQ+ P + T +Q +Q M + +G + G +
Sbjct: 429 PGWRANGSAPPARSFQQSPTPVVSNNNT---RQHRQNRGRMNGHAVSQGNTH---SGTYM 482
Query: 517 PDVPVA---GVPGGMLPGPYDIGGMPFRDAAFSQPMQTG-------------ALASALAN 560
P A + G + + + M+ G L S LAN
Sbjct: 483 PQAQQASQSAISSRESSTQQRTGQAKYVPSGRHREMEKGSGLSSSGGSLGPEVLHSMLAN 542
Query: 561 ASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 620
A+PEQQ+ +LGE+LY LV +++ + AAK+TGMLLEMD E EA +
Sbjct: 543 ATPEQQKEILGEHLYMLVQKIKPNLAAKITGMLLEMDNVE----------------EAFQ 586
Query: 621 VLRN 624
VL+N
Sbjct: 587 VLKN 590
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 154/284 (54%), Gaps = 17/284 (5%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L S+++S L D+F + G ++S +V +S GYG+V +
Sbjct: 91 DARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEE 149
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG----AGNIFIKNLDKSIDNKALHDTF 148
A A++ LN + K I + + SG N+++KNLD I L + F
Sbjct: 150 SANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKF 209
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S+FG I+S VA DS G S+G+GFV FDN E AK A++ +NG+ L K ++V +K E
Sbjct: 210 SSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAE 269
Query: 209 RESTAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE K + +N+YVKN+ + +++ L+ F G ITS +MRD G
Sbjct: 270 REQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKG 329
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
SK FGFV F P++A ++V + +G F K YV AQ+K +R
Sbjct: 330 ISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRKEDR 373
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/616 (42%), Positives = 361/616 (58%), Gaps = 102/616 (16%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GGV + S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++SLGY YVNY
Sbjct: 56 GGVAEN----SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNY 111
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ + +A+DELN++ + G+P RIM+S RDP+ R+SG GNIFIKNL +IDNKALHDTF
Sbjct: 112 HKFEDGEKAIDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTF 171
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FG ILSCKVATD +GQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++
Sbjct: 172 SAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKD 231
Query: 209 RESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
RES + K + N+YVKN+ TE + +++F +G ITS + +D DGKSK FGFVN+
Sbjct: 232 RESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNY 291
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
++ A +VEALN K+ + ++ YVG+AQKK ER ELK ++E E K++G+NL++
Sbjct: 292 EEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFI 351
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLDD I +KL+E F FGTITS KVM D G S+G GFV FST EEA+KA+TEMN +M
Sbjct: 352 KNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRM 411
Query: 387 VVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 446
+ KPLYVALAQRK+ RR++L+ Q++ RM
Sbjct: 412 INGKPLYVALAQRKDVRRSQLE-QQIQARNQMRM-------------------------- 444
Query: 447 PGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGP---------MQQAQ--QPIP 495
Q G P F+P + GQQ P G R P M++ Q QP P
Sbjct: 445 -----QNAAAAGGFPGQFMPPMYYGQQGFFPPGGRGNAAPFPGPNPQMMMRRGQPGQPFP 499
Query: 496 LMQPRMLPRGRIYRYPPGCNIPDVPVAGVP--------------------------GGML 529
PR PG N VPV G+P G
Sbjct: 500 EQWPR-----------PGPNGQPVPVYGIPPQFQDQRAQQQQQQQQQPQQPQQQQQRGYY 548
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV----DQLEHDN 585
PG A P + LA+ +++ PEQQ+ +LGE LYP + E +
Sbjct: 549 PG----------QAGVKVPAKE--LAAIISSVPPEQQKRILGEELYPRIVATGKAQEPEA 596
Query: 586 AAKVTGMLLEMDQTEV 601
A K+TGM+L ++ E+
Sbjct: 597 AGKITGMMLGLENQEI 612
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/471 (52%), Positives = 319/471 (67%), Gaps = 26/471 (5%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F S SLYVGDL V ++QL+++FN +G VVS+RVCRD TRRSLGY YVN++AA +A R
Sbjct: 42 FPSGSLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAER 101
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN++ + GKP RIM+S RDP +RKSG GN+FIKNLDK+IDNKAL DTFS FGNILS
Sbjct: 102 ALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILS 161
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADK 215
CKV TD G S+GYGFV ++ +E+A++AI K+NGM++N KQVFVG F+ ++ER E
Sbjct: 162 CKVVTDENG-SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKERVELGEGV 220
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAAR 274
T+F NV+VKNL E TT+ L +F +FG ITS +M+ + D KSK FGFV ++ +DA
Sbjct: 221 TKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQA 280
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V ALNG + K +V +AQKK ERE ELK +++ E +K++G+NLYVKNLDD+I
Sbjct: 281 AVNALNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAID 340
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPL 392
+DK++ F+ FGTITS K+MRD G SRG GF+ FS+AEEA+KA+TEMNG+ + KPL
Sbjct: 341 EDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFPKPL 400
Query: 393 YVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPVAPGL------GQQLFYGQGPPIIP 444
YVALAQR E+RRA+L F+Q R +G RM V G+ G Q+FY +P
Sbjct: 401 YVALAQRAEDRRAQLAAHFAQQRGNMGGRMA--GGVIAGMPPQYMAGPQMFYAG----VP 454
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP 495
G Y Q + MR + V G G R G GP Q +P
Sbjct: 455 QNRGMVYPQNV---MRRGAWPANVPVGV----AAGARPGFGPFMAVPQGVP 498
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQREAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 289/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 61/89 (68%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 562 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 621
Query: 615 VAEAMEVLRNVAQQQATGPSPTDRVASLS 643
V+E + + + + T+RV +S
Sbjct: 622 VSEVSDPVLQPSDWELGHSGTTERVRPIS 650
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 571 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 630
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 631 VDEAVAVLQ 639
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 573 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 632
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 633 VDEAVAVLQ 641
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/596 (42%), Positives = 360/596 (60%), Gaps = 60/596 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 39 TASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAI 98
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+P RIM+S RDP++RK G+GNIFIKNL IDNKALHDTFS FGNILSCK
Sbjct: 99 EKLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCK 158
Query: 159 VATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
+ATD + G S+G+GFV F+++E+A+ AID +NGMLLN ++V+V P + +++R+S + K
Sbjct: 159 IATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAK 218
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+S T E + ++ F + +TS + +D++GK + FGFVN++ AA++
Sbjct: 219 ANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKA 278
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LNG +F ++ +VG+AQKKYER+ EL+ ++EQS E +K++G+NL++KNLDDSI D
Sbjct: 279 VEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDD 338
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++L+E FS FGTITS KVM NG S+G GFV FST EEA+KA+TE N ++V KPLYVA
Sbjct: 339 ERLREEFSPFGTITSVKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 398
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
+AQRK+ RR SQ+ + R M G +PP +
Sbjct: 399 IAQRKDVRR-----SQLAQQIQARNQMRYQQVTAAAAAAAAGMRGQFMPP---------M 444
Query: 456 VPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCN 515
G+ P VP P Q + + G M P M P+ G +Y PP
Sbjct: 445 FYGVMPPRGVPFNGPNPQ------QLAAMGGM-----PKNGMPPQQFRNGPMYGVPP--- 490
Query: 516 IPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLY 575
G P + A F ++ GA A+ ++QR LLGE LY
Sbjct: 491 ------QGAP---------------QQAGF---VRNGANANQFYQ---QKQRQLLGEQLY 523
Query: 576 PLVDQLEHDN--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
V D A K+TGM+L++ EV+ LLES E + EA Q+Q
Sbjct: 524 KKVFARTSDEEAAGKITGMILDLPSQEVVPLLESDELFEQHFKEAFAAYETFKQEQ 579
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 18/196 (9%)
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAA 273
+T ++YV L T +E L IF G ++S V RDA K+ + +VNF+D +
Sbjct: 36 ETSTASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGR 95
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+++E LN + + +Q+ + SL++ N+++KNL I
Sbjct: 96 QAIEKLNYTPIKGQPCRIMWSQR------------DPSLRKKGSG----NIFIKNLHADI 139
Query: 334 SDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ L + FS FG I SCK+ D G S+G GFV F + E A +A+ +NG ++ + +
Sbjct: 140 DNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEV 199
Query: 393 YVALAQRKEERRARLQ 408
YVA +++R+++L+
Sbjct: 200 YVAPHVSRKDRQSKLE 215
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/431 (53%), Positives = 305/431 (70%), Gaps = 30/431 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD V ++QL+++F+Q+G V S+RVCRD TRRSLGY YVNYN+A +A A
Sbjct: 23 NSSLYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSALDAAAAE 82
Query: 99 DE---LNFTPL--------NGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
LN+T + + KP+RIM+S+RDP RKSG GNIFIKNLDK IDNKALHDT
Sbjct: 83 RAIEALNYTSVIPGKEGGEDSKPMRIMWSHRDPAFRKSGVGNIFIKNLDKDIDNKALHDT 142
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
F+ FG ILSCKVATD G S+GYGFV ++ EE+A+ AI+K+NGMLL K+VFVGPFL++
Sbjct: 143 FTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKVFVGPFLKRT 202
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
ER ++ + NV+VKNLSE T+++++K+F E G++TS A+M+D GKSK FGF+NF+
Sbjct: 203 ERPVDKEQ-HYTNVFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFE 261
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
D + A +V ALNGK+ D KE Y G+AQKK ERE ELK KF++ +E K++G+NLYVK
Sbjct: 262 DAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIAKYQGMNLYVK 321
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NL D + DD+L+ F+ GTITS KVM+D G S+G GFV +S+ EEA++A+TEMNGKM+
Sbjct: 322 NLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEATRAVTEMNGKML 381
Query: 388 VSKPLYVALAQRKEERR---------ARLQFSQMRPPVGPRMPM---YPPVAPGLGQQLF 435
+ KP+YVALAQR+E RR R+ RP +PM +PP A QQ F
Sbjct: 382 LGKPMYVALAQRREVRRQQLEQQYTQQRVAPMSGRPNAPGPVPMPGVFPPNAVSFPQQYF 441
Query: 436 ------YGQGP 440
YG GP
Sbjct: 442 APPTNAYGPGP 452
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +L V+D QL F G + S +V +D S +S G+G+V Y++ EAT
Sbjct: 312 KYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKD-SAGKSKGFGFVCYSSPEEAT 370
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA+ E+N L GKP+ + + R
Sbjct: 371 RAVTEMNGKMLLGKPMYVALAQR 393
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 272/645 (42%), Positives = 375/645 (58%), Gaps = 103/645 (15%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ LYD F G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++R+SG GN+FIKNLD+SIDNKAL+DTFS+FGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE--RESTADKTR 217
D G S+G+GFV ++++ESA+ AI+K+NGML+ DK+VFV F + + RE
Sbjct: 122 VCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKH 180
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSV 276
F N++VKNL ++ D L K F +FG + S V+ D G SKC GF++F + D A +V
Sbjct: 181 FTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAV 240
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E ++ K+ + K+ Y G+AQKK ER ELK K+E+ +E +++G+NLYVKNLDDSI D+
Sbjct: 241 EIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDE 300
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
L+E F +FG ITS KV+ D N
Sbjct: 301 GLREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEGEAVEEKKTEDSEAAGDAPGP 360
Query: 359 -------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQ 411
G S+G GFV FS+ EEA+KA+TEMNG++ KPLYV LAQRKE+R+A LQ
Sbjct: 361 EKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQY 420
Query: 412 M-RPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQP 470
M R G RM + +G Q+ P P Y +P +Q
Sbjct: 421 MQRVSTGIRMQAF------MGNQVVNQNFQP-------------------PRYILPTMQ- 454
Query: 471 GQQNQRPGGRRSGTGPMQQAQQPIPLMQ--PRMLP----RGRIYRYPPGCNIPDVPVAGV 524
GQ P+Q Q P+++ PR P R +Y+ I P A V
Sbjct: 455 GQ-------------PVQMFPQGTPMVRATPRWAPPNQVRHIVYQ-SHSQQILASPDARV 500
Query: 525 PGGMLPGPYDIGGMPFRDAAFSQPMQTGA----LASALANASPEQQRTLLGENLYPLVDQ 580
+P ++ MP + +QP A +S LANA+P++Q+ +LGE L+PL+
Sbjct: 501 RNVQIPS--EVIQMPPQMPHQNQPAGDQAPETLTSSMLANANPQEQKQMLGERLFPLIQS 558
Query: 581 L-EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRN 624
+ D A K+TGMLLE+D +E+LH+L++ E LK+KV EA+ VL++
Sbjct: 559 MAATDLAGKITGMLLEIDNSELLHMLDNRELLKSKVDEAVLVLKH 603
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 62/241 (25%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
GDA + T+L+V +L S + L F Q G+VVS +V D +T S +G++++
Sbjct: 175 GDAAKHF-TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEH 233
Query: 92 HEATRALDELNFTPLNGKP---------------IRIMYS-YRDPTIRKSGAGNIFIKNL 135
+A A++ ++ + GK ++ Y + I++ N+++KNL
Sbjct: 234 DQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNL 293
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATD--------------------------------- 162
D SID++ L + F FGNI S KV TD
Sbjct: 294 DDSIDDEGLREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEGEAVEEKKTEDSEA 353
Query: 163 ------------SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
G+S+G+GFV F + E A A+ ++NG + K ++VG RK++R+
Sbjct: 354 AGDAPGPEKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRK 413
Query: 211 S 211
+
Sbjct: 414 A 414
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 574 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 633
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 634 VDEAVAVLQ 642
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 573 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 632
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 633 VDEAVAVLQ 641
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 268/605 (44%), Positives = 372/605 (61%), Gaps = 57/605 (9%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD SV ++ L+++FN +G V SVRVCRD TRRSLGY YVN++ + RAL
Sbjct: 45 NASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRAL 104
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN++P+ +P RIM+S RDP +RK+GAGNI+IKNLD +IDNKALHDTFS FG ILSCK
Sbjct: 105 EELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCK 164
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
+ATD G SRG+GFV +++ ESA+SAI +NGMLLNDK+VFVGP + K +R + + K
Sbjct: 165 IATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKN 224
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NV++KNL TE + +++ +FG +S + + +GK FGFV++ + D A +++
Sbjct: 225 SFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAI 284
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ +F + + G+A+KKYER EL+ ++E S E +K++G+NLY+KNLDD+I DD
Sbjct: 285 DGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDD 344
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F+ GTITS KVM D G S+G GFV +S+ EEA+KA+TEMN ++V KPLYV L
Sbjct: 345 KLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVL 404
Query: 397 AQRKEERRARLQ-----FSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 451
AQRK+ RR++LQ +QMR L QQ G P PG Y
Sbjct: 405 AQRKDVRRSQLQQQIQAKNQMR----------------LQQQAAAGGLPGQYMGNPGVFY 448
Query: 452 QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ---PRMLPRG-RI 507
Q PG P PG+ GG G P + P+P PR +P G +
Sbjct: 449 PGQ--PGFMP--------PGR-----GGMPFGANPQMMMRPPMPPQNQFPPRGVPGGPNM 493
Query: 508 YRYPP-----GCNIPDVPVAG--VPGGMLPGPY-DIGGMPFRDAAFSQPMQTGALASALA 559
Y PP G P P+ G P PGP G P R S+ + +++AL
Sbjct: 494 YGAPPQGYQQGGFPPQGPMRGGQPPRSGQPGPQGQFRGAPRRKDGESRVADS--ISNALE 551
Query: 560 NASPEQQRTLLGENLYP--LVDQLEHDNA---AKVTGMLLEMDQTEVLHLLESPEALKAK 614
NA EQ + L+GE LYP L ++ NA K+TGMLLEM E+L +++ E L+A+
Sbjct: 552 NAPEEQHKQLVGEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILEVIDDEEGLQAQ 611
Query: 615 VAEAM 619
+ +A+
Sbjct: 612 INDAI 616
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 269/621 (43%), Positives = 362/621 (58%), Gaps = 92/621 (14%)
Query: 10 APVAVAAQPSPATNGI-ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
AP A + +PA + ANN V S SLYVG+LD SV+++ LYD+F+ +G V S
Sbjct: 23 APAASETEGTPAASETEANNSNVDT----TSASLYVGELDPSVSEALLYDIFSPIGPVTS 78
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+RVCRD T+ SLGY YVN+N A+++LN++P+ GKP RIM+S RDP +RK GAG
Sbjct: 79 IRVCRDAITKTSLGYAYVNFNDHESGRTAIEKLNYSPIKGKPCRIMWSQRDPALRKKGAG 138
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
NIFIKNL IDNKALHDTFS FGNILSCK+ATD G+S+G+GFV F+ + +A A+D +
Sbjct: 139 NIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAI 198
Query: 189 NGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
NGM+LN ++V+V + K++RES + K F NVYVKN+ T ED+ +F ++G IT
Sbjct: 199 NGMMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPIT 258
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S A+ +D++GK + FGF+NF++ DDAA++VE LN +F ++ YVG+AQKKYER ELK
Sbjct: 259 SIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQELKK 318
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
++E S E K++G+NL+VKNLDDSI D+KL+ F+ FG+ITS KVMR+ G S+ GF
Sbjct: 319 QYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGF 378
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL-QFSQMRPPVGPRMPMYPP 425
V FST EEA+KA+TE N ++V KPLYVA+AQRK+ RR++L Q Q R + +
Sbjct: 379 VCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQLRYQQATAAA 438
Query: 426 VAPGLG------QQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGG 479
A G Q +FYG ++PP+ VP PN PM
Sbjct: 439 AAAAAGMPGQFMQPMFYG----VMPPRG--------VPFNGPN--SPM------------ 472
Query: 480 RRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMP 539
G P QQ G +Y PP G P G PG
Sbjct: 473 ---GAVPRQQ------------FRNGPVYGVPP---------QGAPQGNFPG-------- 500
Query: 540 FRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDN--AAKVTGMLLEMD 597
D + Q +QR LGE LY V D A K+TGM+L++
Sbjct: 501 -NDQLYQQ-----------------KQRQALGEELYKRVSSKTSDEEAAGKITGMILDLP 542
Query: 598 QTEVLHLLESPEALKAKVAEA 618
EV+ LLE+ E + EA
Sbjct: 543 PQEVMPLLENDELFEQHFNEA 563
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 256/538 (47%), Positives = 336/538 (62%), Gaps = 32/538 (5%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
LYVALAQRKEER+A L M+ G R +P A + Q G +P P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALP-----ANAILNQFQPAAGGYFVPAVPQV- 416
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRY 510
G RP Y+ P Q Q P R G Q Q +P + PR +
Sbjct: 417 -------GGRPPYYTPN-QLAQMRPNP---RWQQGGRPQGFQGMPSAIRQSGPRPTLRHL 465
Query: 511 PPGCNIPDVPVAGVP------GGMLPG--PYDIGGMPFRDAAFSQPMQTGALASALAN 560
P N P G+P G P D GG + Q+G + +A+ N
Sbjct: 466 APTGNAP--ASRGLPTTTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQN 521
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 558 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 617
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 618 VDEAVAVLQ 626
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 572 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 631
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 632 VDEAVAVLQ 640
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 22 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 81
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 82 AERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 141
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 142 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 200
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +D
Sbjct: 201 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 260
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 261 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 320
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 321 TIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 379
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 380 LYVALAQRKEERKAHLTNQYMQRVAGMR 407
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/606 (43%), Positives = 368/606 (60%), Gaps = 37/606 (6%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+ F+ G ++S+RV RD+ TRRSLGY VN+ +A RALD +NF + GKP+RIM+
Sbjct: 2 LYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP++R+SG GN+FIKNL+K+IDNKAL+DTFS FGNILSCKV +D G S+G+GFV F
Sbjct: 62 SQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHF 120
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTED 233
+ EE+A+ AI+K+NGMLLND++VFVG F ++ERE+ F NVY+KN + ++
Sbjct: 121 ETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDE 180
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
L +FG FG I S VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K YVG+
Sbjct: 181 TLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGR 240
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK +R ELK KFEQ ++ + +++G+NLYVKNLDD I D++L++ FS FGTITS KV
Sbjct: 241 AQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKV 300
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL------ 407
M + G S+G GFV FS+ EEA+KA++EMNG++V +KPLYVALAQRKEER+A L
Sbjct: 301 MTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQ 359
Query: 408 QFSQMRP---PVGPRMPM---YPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRP 461
+ + +R PV P P Y A Q I P+P + Q G RP
Sbjct: 360 RMASVRSGPNPVNPYQPASSSYSVAAVPQTQNCVPCCPSQIAQPRPSARWIAQ---GSRP 416
Query: 462 NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRI----YRYPPGCNIP 517
+ F P V PG + P RS ++ + + + + R P +
Sbjct: 417 HPF-PNV-PGAIH--PAAPRSSLTTVRPSSSHVQVTTAHRITNTSAQITGQRPAPASSAT 472
Query: 518 DVPVAGVP-----GGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGE 572
PV +P G+ + + A Q AS L A P++ + +LGE
Sbjct: 473 ATPVHSIPQYKYAAGVQNSQQHLNAQLAQQPAVCIQGQEPWTASMLVTA-PQEPKQMLGE 531
Query: 573 NLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR----NVAQQ 628
L+PL+ + A K+TGMLL++D +E L +LESP + ++ EA+ L+ A Q
Sbjct: 532 RLFPLIQAMHPTLAGKITGMLLDIDNSEPLRMLESPVSRCSRAEEAVATLQAHQVKEAAQ 591
Query: 629 QATGPS 634
+A G +
Sbjct: 592 KAVGST 597
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 114/205 (55%), Gaps = 25/205 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D L LF + GQ++SV+V D +S G+G+V++ +A +A+D
Sbjct: 166 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGG-KSKGFGFVSFERHEDAQKAVD 224
Query: 100 ELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNK 142
E+N LNGK I + + + D +IR G N+++KNLD ID++
Sbjct: 225 EMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGI-NLYVKNLDDGIDDE 283
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS FG I S KV T+ G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 284 RLQKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVAL 342
Query: 203 FLRKQERESTADKTRFNNVYVKNLS 227
RK+ER++ N Y++ ++
Sbjct: 343 AQRKEERQA-----HLTNQYIQRMA 362
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 265 RYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEAT 322
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R R++ N +I+ +
Sbjct: 323 KAVSEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYIQRM 361
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 270/595 (45%), Positives = 356/595 (59%), Gaps = 72/595 (12%)
Query: 76 STRRSLGYGYVNY-NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
S R SLG +N+ N A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKN
Sbjct: 9 SRRPSLGGIILNFENFLLAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKN 68
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLN
Sbjct: 69 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 127
Query: 195 DKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S VM
Sbjct: 128 DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 187
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ
Sbjct: 188 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 247
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+
Sbjct: 248 QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSP 306
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR------------------- 413
EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L M+
Sbjct: 307 EEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPA 366
Query: 414 PPVG----------PRMPMYPP------------VAPGLGQQLFYGQGPPIIP--PQPGF 449
PP G R YPP A G F I P P+P F
Sbjct: 367 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPF 426
Query: 450 GYQQQLVPGMRP-NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIY 508
MRP + VP V Q+ + G P A P + R +P+ Y
Sbjct: 427 ST-------MRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ---Y 474
Query: 509 RYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRT 568
+Y G P + P + P A Q AS LA+A P++Q+
Sbjct: 475 KYAAGVRNPQQHLNAQPQVTMQQP-----------AVHVQGQEPLTASMLASAPPQEQKQ 523
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 524 MLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 578
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 63 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 120
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 121 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 180
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 181 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 240
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 241 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 299
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 300 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 349
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 150 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 206
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 207 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 266
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 267 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 325
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 326 LYVALAQRKEERQA-----HLTNQYMQRMA 350
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/581 (45%), Positives = 355/581 (61%), Gaps = 53/581 (9%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 392 LYVALAQRKEERRARL------QFSQMRPPVGPRMPMYPPVAPG----------LGQQLF 435
LYVALAQRKEER+A L + + +R P + Y P P + +
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 358
Query: 436 Y--GQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQP 493
Y Q + P P + Q G RP+ F M PG RP R M+ A
Sbjct: 359 YPTNQLAQLARPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQ 409
Query: 494 IPLMQP----------RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDA 543
+P + M PR ++ VP G+ + P
Sbjct: 410 VPRVMSTQRVANTSTQTMGPRPAAAATAATPSVRTVPQYKYAAGVRNPQQHLNTQP--QV 467
Query: 544 AFSQPM-----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
A QP Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D
Sbjct: 468 AMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDN 527
Query: 599 TEVLHLLESPEALKAKVAEAMEVL-----RNVAQQQATGPS 634
+E+LH+LESPE+L++KV EA+ VL + AQ+ P+
Sbjct: 528 SELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPT 568
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 93
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + F FG
Sbjct: 94 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 153
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 154 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 214 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 272
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 273 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S +S G+G+V++ +
Sbjct: 123 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 179
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 299 LYVALAQRKEERQA-----HLTNQYMQRMA 323
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/594 (43%), Positives = 359/594 (60%), Gaps = 55/594 (9%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVGDL V ++ LY+ F+QMG V+S+RVCRD +R+SLGY YVNY +A AL
Sbjct: 7 NASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHAL 66
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELNF ++ KP RIM++ R+P R+SGAGNIFIKNL+K IDNKAL+DTFS FG ILSCK
Sbjct: 67 EELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCK 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D G+SRGYGFV F+ EE A+ AID +NG +L + V V FL ++ERE +T +
Sbjct: 127 VAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQGGRT-Y 185
Query: 219 NNVYVKNLSET-TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
N+YVKNL ++ T DDLKK+F +FG ITST + +D + KS+ FGFVNF++ + A +VE
Sbjct: 186 TNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVE 245
Query: 278 ALNGKKFD-DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
A+N K+ + D++ +VG+A KK+ERE ELK ++ +E +K + NLY+K+L + +++D
Sbjct: 246 AMNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTED 305
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L++ FS+FGTITS K+M D NG SRG GFV F +A+EA+ A+ EM+G M+ KPLYVAL
Sbjct: 306 ALRDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYVAL 365
Query: 397 AQRKEERRARLQFSQMRP---PVGPRMPMYPPVAPGLGQQLFYGQGPPII----PPQPGF 449
A RK +R+ +L + P P+G M PP P + PP+ Q
Sbjct: 366 ALRKVDRQKQLASRRTMPGQMPMGYLPFMMPP--PQANMMRMGNRFPPMFMMQQQQQQQQ 423
Query: 450 GYQQQLVPGMRPNYFVPMVQPGQQNQRPG-GRRSGTGPMQQAQQPIPLMQPRMLPRGRIY 508
QQQ PGM N M G+ N G GR G GPM QP+P+
Sbjct: 424 QQQQQHAPGMNGN----MRGRGRGNPNKGNGRGRGQGPMPSQGQPMPMQ----------- 468
Query: 509 RYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRT 568
+ P P P + LA+ + +Q+
Sbjct: 469 ------SAPSAARVAAPA---------------------PNNNQDEFANLAHMTDAEQKN 501
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
LLGE L+PL+ Q H+ A K+TGMLL M+ EVL+LL+ + LK + EA ++L
Sbjct: 502 LLGEKLFPLIQQEYHERAGKITGMLLGMETAEVLNLLQDQDQLKQRAREAYDLL 555
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTA 372
A+ + +LYV +L +++ L E FS+ G++ S +V RD +SR G +V +
Sbjct: 2 AEHQQNASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRD--AVSRQSLGYAYVNYQQH 59
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQR 399
+A AL E+N + + KP + AQR
Sbjct: 60 ADAKHALEELNFEKIHDKPCRIMWAQR 86
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 254/584 (43%), Positives = 351/584 (60%), Gaps = 71/584 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDLD SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 39 SASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAI 98
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP +RK G+ NIFIKNL IDNKAL+DTFS FGNILS K
Sbjct: 99 EKLNYTPIKGRLCRIMWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNILSSK 158
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+++ +AK AID LNGMLLN +++FVGP L ++ER+S ++++
Sbjct: 159 IATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKA 218
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN++ TT+++ ++F ++G + S A+ + DGK K FGFV+F++ +DAA++V
Sbjct: 219 NFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAV 278
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNG +F D+E +V +AQKKYER ELK ++E S E K++G+NL++KNLDDSI D+
Sbjct: 279 EELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDE 338
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE F+ +G ITS +VMR NG SRG GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 339 KLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 398
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRK+ RR SQ+ + R M A G +PP +
Sbjct: 399 AQRKDVRR-----SQLAQQIQARNQMRYQQATAAAAAAAAGIPGQFMPP---------MF 444
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
G+ P VP GP Q +P Q R P
Sbjct: 445 YGVMPPRGVPF----------------NGPNPQQMNGVPPQQFRNAP------------- 475
Query: 517 PDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
V GGM P G P AA + N +Q+R LGE LY
Sbjct: 476 -------VYGGMPPQ----GAFPRNGAAGN-------------NHFYQQKRQALGEQLYK 511
Query: 577 LVD--QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
V ++ + A K+TGM+L++ +V+ LLE+ E EA
Sbjct: 512 KVSAKNVDEEAAGKITGMILDLPPQDVVSLLENDELFDQHFKEA 555
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L++ +LD S++D +L + F G + SVRV R +S G+G+V ++ EAT
Sbjct: 320 KYQGVNLFIKNLDDSIDDEKLKEEFAPYGNITSVRVMR-TENGKSRGFGFVCFSTPEEAT 378
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 379 KAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 417
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/611 (43%), Positives = 371/611 (60%), Gaps = 30/611 (4%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++SLGY YVN+ + +A
Sbjct: 49 TSASLYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQA 108
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++LN++ + G+P RIM+S RDP++R++G GNIFIKNL +IDNKALHDTFS FG ILSC
Sbjct: 109 IEDLNYSLIEGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGRILSC 168
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVATD LG S+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K
Sbjct: 169 KVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEEMK 228
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NV+VKNL+ T+ +LK++F +G ITS+ + +D +GKSK FGFVNFD+ +DA ++
Sbjct: 229 ANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKA 288
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + YVG+AQKK ER EL+ ++E + E K++G+NL++KNLDD+I
Sbjct: 289 VDELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDS 348
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KL+ F FG ITS +VM D G S+G GFV FS+ EEA+KA+TEMN +MV KPLYVA
Sbjct: 349 EKLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVA 408
Query: 396 LAQRKEERRARLQFSQMRPPVGPRM-------PMYPPVAPG-LGQQLFYGQGPPIIPPQP 447
LAQRK+ RR++L+ Q++ RM PG +FYGQ P PP
Sbjct: 409 LAQRKDVRRSQLE-QQIQARNQMRMQNAAAAAAAAGGAIPGQFMNPMFYGQQPGFFPPPG 467
Query: 448 GFGYQQQLVPGMRPNYFVPMVQP-GQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
G + G PN P P R G P QA P
Sbjct: 468 ANGGRPNGANGAGPNA-GPNANPQMMMAAAAAAARGGQIPPPQAGAGWGRPNPNGQQIPP 526
Query: 507 IYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQ 565
+Y PP N P+ G P PG Y G +P + LA+ L++ PEQ
Sbjct: 527 VYGMPPVYQNGPNGQPRGAPA---PGMYPPNG---------RPTKARDLAAILSSVPPEQ 574
Query: 566 QRTLLGENLYPLVDQL----EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
Q+ +LGE LYP + E + A K+TGM+L++D E+L LLE E +A+
Sbjct: 575 QKRILGEELYPKIVSTGRANEPEAAGKITGMMLDLDNQEILSLLEDDELFNNHFEDALTA 634
Query: 622 LRNVAQQQATG 632
Q G
Sbjct: 635 YEEYKQSNEEG 645
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 122 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E +D+LK++F +FG S VMRD GKSK FGFV+++ +DA ++VE
Sbjct: 181 FTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 240
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+K
Sbjct: 241 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 300
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALA
Sbjct: 301 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 359
Query: 398 QRKEERRARLQFSQMRPPVGPR 419
QRKEER+A L M+ G R
Sbjct: 360 QRKEERKAHLTNQYMQRVAGMR 381
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S +S G+G+V+Y +
Sbjct: 178 AKEF--TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSG-KSKGFGFVSYEKHED 234
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 235 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 294
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 295 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 353
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 354 LYVALAQRKEER-----KAHLTNQYMQRVA 378
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 260/601 (43%), Positives = 347/601 (57%), Gaps = 83/601 (13%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A
Sbjct: 8 FPLASLYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADAEL 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + G+PIRIM+S RDP +RKSG GNIFIKNL++SIDNKAL+DTFSTFGNILS
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEESIDNKALYDTFSTFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G SRG+GFV F+ E+A+ AI +NGMLLN+++VFV F +QERE+
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREAELGVR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVYVKNL E L+++F +FG S VMRD G S+ FGFVNF+ ++A +
Sbjct: 187 AMEFTNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK---FEGLNLYVKNLDD 331
+V +NGK+ + YVG+AQK ER+ ELK KF+Q + D+ ++G+NLYVKNLDD
Sbjct: 247 AVMDMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDD 306
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
SI +++L++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG ++ +KP
Sbjct: 307 SIDNERLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGCILGTKP 365
Query: 392 LYVALAQRKEERRARL--QFSQMR----------------PPVGPRMPMYPPVAPGLGQQ 433
LYVALAQRK+ER+A L QF Q R PV +P P V L
Sbjct: 366 LYVALAQRKDERKAILTNQFMQQRLSNVWALGGPHLGSFQQPVSYFLPTVPQVRACL--- 422
Query: 434 LFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQP 493
P ++ + P +P G P +R+ P
Sbjct: 423 ----------QPDSQVEQEESFKANIVPRLLLPETAGGFH---PVSKRADENP------- 462
Query: 494 IPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA 553
RM PR + P IP Q
Sbjct: 463 ----SLRMCPRHHVQVQEPAVCIPG-------------------------------QEPL 487
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
S LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L A
Sbjct: 488 TVSMLAAAPLHKQKQMIGERLYPLIYNVHTQLAGKITGMLLEIDNSELLFMLESPESLNA 547
Query: 614 K 614
K
Sbjct: 548 K 548
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/579 (45%), Positives = 353/579 (60%), Gaps = 53/579 (9%)
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNIL
Sbjct: 82 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 141
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
SCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 142 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 200
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA
Sbjct: 201 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 260
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I
Sbjct: 261 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 320
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLY
Sbjct: 321 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 379
Query: 394 VALAQRKEERRARL------QFSQMRPPVGPRMPMYPPVAPG----------LGQQLFY- 436
VALAQRKEER+A L + + +R P + Y P P + +Y
Sbjct: 380 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYP 439
Query: 437 -GQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP 495
Q + P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 440 TNQLAQLARPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVP 490
Query: 496 LMQP----------RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAF 545
+ M PR + VP G+ + P A
Sbjct: 491 RVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQP--QVAM 548
Query: 546 SQPM-----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTE 600
QP Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E
Sbjct: 549 QQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSE 608
Query: 601 VLHLLESPEALKAKVAEAMEVL-----RNVAQQQATGPS 634
+LH+LESPE+L++KV EA+ VL + AQ+ P+
Sbjct: 609 LLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNPT 647
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 115 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 172
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + F FG
Sbjct: 173 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 232
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 233 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 292
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 293 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 351
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 352 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 401
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S +S G+G+V++ +
Sbjct: 202 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 258
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 259 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 318
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 319 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 377
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 378 LYVALAQRKEERQA-----HLTNQYMQRMA 402
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 268/605 (44%), Positives = 358/605 (59%), Gaps = 79/605 (13%)
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
+ V V RDL+ + ++ +A RALD +NF + GKP+RIM+S RDP++RK
Sbjct: 80 KTVQVPALRDLT--------FYYSSSRQDAERALDTMNFDVIKGKPVRIMWSQRDPSLRK 131
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ A
Sbjct: 132 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERA 190
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
I+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+F
Sbjct: 191 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 250
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G S VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+
Sbjct: 251 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 310
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
ELK KFEQ ++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+
Sbjct: 311 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSK 369
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR--------- 413
G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L M+
Sbjct: 370 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 429
Query: 414 ----------PPVG----------PRMPMYPP------------VAPGLGQQLFYGQGPP 441
PP G R YPP A G F
Sbjct: 430 NPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGA 489
Query: 442 IIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
I P P+P F MRP + VP V Q+ + G P A P +
Sbjct: 490 IRPAAPRPPFS-------TMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAV- 541
Query: 499 PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASAL 558
R +P+ Y+Y G P + P + P A Q AS L
Sbjct: 542 -RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-----------AVHVQGQEPLTASML 586
Query: 559 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
A+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA
Sbjct: 587 ASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEA 646
Query: 619 MEVLR 623
+ VL+
Sbjct: 647 VAVLQ 651
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 136 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 193
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 194 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 253
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 254 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 313
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 314 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 372
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 373 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 422
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 223 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 279
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 280 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 339
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 340 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 398
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 399 LYVALAQRKEERQA-----HLTNQYMQRMA 423
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 233/469 (49%), Positives = 319/469 (68%), Gaps = 20/469 (4%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V +S LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VMRD++G+S+ FGFVNF+ ++A ++V+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+D++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIPPQPGF 449
QRKEER+A L R P P + + P V Q ++Y G I P QP
Sbjct: 369 QRKEERKAILTNQYRRRPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSG-SITPMQPDP 427
Query: 450 GYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
+ Q P P+ +VQP Q P SG Q +P Q
Sbjct: 428 RWTAQ--PHGPPS--ASVVQPLSTTQHPCIHLSGAS---QVSSQVPHTQ 469
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 20/195 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L +V++ +L DLF+Q G + SV+V RD S +S G+G+VN+ E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R ++ R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI+++ L + FST+G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSINDERLKEVFSTYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 362 PLYVALAQRKEERKA 376
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/626 (42%), Positives = 355/626 (56%), Gaps = 57/626 (9%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVGDL V + L+D F+++G V SVRVCRD +T RSL YGYVNY + +A ALD+L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N + + KPIR+M+S RDP R+SG GNIF+KNL+ S+DN +L + FS FG++LSCKVA
Sbjct: 104 NHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAK 163
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNV 221
+ G SRGYGFVQF ++ESA AI LNG L ND+++ V F++K ER + D +F N+
Sbjct: 164 NEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDD-KFTNL 222
Query: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
Y+K+L + TE+ +K F +FG I S +MR DG S FGFV+F +P+ A ++ E ++G
Sbjct: 223 YMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHG 282
Query: 282 KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKEL 341
K YV +AQKK ER+ L+ E+ E K N+Y+KN+ D + DD L+
Sbjct: 283 MLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDALRAR 342
Query: 342 FSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
F+E+G ITS KVMRD GISRG GFV +ST EEA + M G M KPLYVA+ QRKE
Sbjct: 343 FAEYGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIFQRKE 402
Query: 402 ERRARLQ--FSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPII---PPQPGFGY-QQQL 455
ERRA+LQ F+Q+ VGP M P P Q+++ I PP+ GF Y L
Sbjct: 403 ERRAKLQQHFAQLARMVGPTNSMIPTGYP----QVYFAHPNAHIPQGPPRHGFVYPPMGL 458
Query: 456 VPGMRPNYF-----VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM--------- 501
RPN F +P + P RS G M P+P M
Sbjct: 459 SHEWRPNMFPSAPNLPQIHSPMMPNSPRHYRSNRGRMGGNMMPLPHAVHAMNYVTHAQPT 518
Query: 502 -----LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQT--GAL 554
+PR R N DV G+ S P+ T +
Sbjct: 519 KEFMSMPRQRFNHSKYFSN--DVMANGLAIHQ-----------------SDPVSTMNDSF 559
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
+S LA+A P +Q+ LLG LYPLV++ + + A+K+TGMLLE+D +EV+ LL S E L K
Sbjct: 560 SSYLASAPPAEQKNLLGNRLYPLVERHQPELASKITGMLLELDNSEVVTLLCSSEMLSVK 619
Query: 615 VAEAMEVLRNVAQQQATGPSPTDRVA 640
V E +++L QAT P D A
Sbjct: 620 VDECVQLL------QATKPKTEDHEA 639
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/416 (55%), Positives = 301/416 (72%), Gaps = 9/416 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EESA ++I+K+NGMLLN K+VFVG F+ ++ERE +K + F
Sbjct: 123 QDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN + T++ LK++F ++G ITS VM + KS+ FGFV F++P+ A +V+
Sbjct: 183 TNVYVKNFGDELTDESLKEMFEKYGTITSHRVM-IKENKSRGFGFVAFENPESAEVAVQE 241
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ D K YVG+AQKK ER+MELK +FEQ E +++G+NLYVKNLDDSI D++
Sbjct: 242 LNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDER 301
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS AEEA+KA+TEMNG++V SKPLYVALA
Sbjct: 302 LRKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALA 360
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIP-PQPGFGYQ 452
QRKE+R+A L M+ RM + G +Y P IP PQ FG Q
Sbjct: 361 QRKEDRKAHLASQYMQRMANMRMQHMGQIFQPGGNGGYY---VPTIPQPQRFFGKQ 413
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 532 PYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTG 591
P I P A Q A+ LA A P +Q+ +LGE L+PL++ + A K+TG
Sbjct: 528 PVAIPTQPVAQQAVHVKGQEPLTATMLAAAQPAEQKQMLGERLFPLIEPMYPSIAGKITG 587
Query: 592 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGP 633
MLLE+D +E++H+LE E+LKAKV EA+ VL A QQ T P
Sbjct: 588 MLLEIDNSELVHMLEHSESLKAKVDEAVAVLH--AHQQKTQP 627
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S++D +L F+ G + S +V L RS G+G+V ++AA EAT
Sbjct: 282 RYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVM--LEEGRSKGFGFVCFSAAEEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 340 KAVTEMNGRIVGSKPLYVALAQR 362
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 267/667 (40%), Positives = 369/667 (55%), Gaps = 88/667 (13%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDL +ND QL F+++G V VCRD+++R+SLGYGYVN+ +A RAL+
Sbjct: 2 TSLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
++N+ + G+PIRIM+S RDP++RKSG GNIFIKNL K+I+ K L+DTFS FG ILSCK+
Sbjct: 62 QMNYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKI 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A D G S+GYGFV F+NEE AK AI K+N M + K V+VG F+ + +R+S K +FN
Sbjct: 122 AMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQNRKQKFN 181
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKN T ++ LK++F EFG I S VM+D++GKSK FGFV + +P+ A +V A+
Sbjct: 182 NIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAM 241
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF-EGLNLYVKNLDDSISDDKL 338
+GK+ + Y +AQ+K ER+ ELK + E+ E K+ +NLYVKNLDD I D++L
Sbjct: 242 HGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERL 301
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE+FS++G I+S KVM D N S+G GFV F+ E+A+KA+TE NG++ SKPLYVA+AQ
Sbjct: 302 KEIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQ 361
Query: 399 RKEERRARL------QFSQMRPPVGPRMP--MYPP---VAPGLGQQLFYGQGPPIIPPQP 447
RKE+RRA L + +R P +P M+P P Q Y ++ QP
Sbjct: 362 RKEDRRAELAAKHTQHLNALRSTAPPMIPALMHPTQNYFHPYPQQARLYSAPGQLMQAQP 421
Query: 448 GFGYQQQLVPGM--------------RPNYFVPMVQPGQQNQ--RPGGRRSGTGPMQQAQ 491
+ L + PN+ V M NQ P P
Sbjct: 422 RWSRNGPLAADLSQLAMSRPPLSNYPNPNHAVAMAPQMNMNQMRSPANVFRTIVPT---- 477
Query: 492 QPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG----------MLPGPYD------- 534
P+P M M+ G + N P +PV V G M+PGP
Sbjct: 478 -PMPSMTSNMMGMGPRQQQQQVANRPVLPVQPVLAGQAGALAQRPQMVPGPNQAANLRQI 536
Query: 535 -------------------IGGMPFRDAAFSQPMQTGALASA------------------ 557
G + F A + Q+ +A A
Sbjct: 537 TQSMPRSQMHQVMPNMTGAAGNVRFNQTARNVSAQSAQMAPANHQNALSALGDQTTYSIG 596
Query: 558 -LANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 616
LA S + Q+ LGE L+PL+ + A K+TGMLL +D EV+H+LES + L+ K+
Sbjct: 597 ELARLSEDDQKRALGEKLFPLIREQYPQLAHKLTGMLLGLDIPEVIHMLESKDTLQEKLQ 656
Query: 617 EAMEVLR 623
E + VLR
Sbjct: 657 EGINVLR 663
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 36 QFVS-TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
++VS +LYV +LD ++D +L ++F++ G + S +V D S RS G+G+V + +A
Sbjct: 280 KYVSNVNLYVKNLDDEIDDERLKEIFSKYGPISSAKVMTD-SNNRSKGFGFVCFTNPEQA 338
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E N KP+ + + R
Sbjct: 339 TKAVTEANGRVEYSKPLYVAIAQR 362
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 278/695 (40%), Positives = 385/695 (55%), Gaps = 127/695 (18%)
Query: 6 VQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ 65
V+ Q A AA P+P T S SLYVG+LD SV ++ L++LF+Q+G
Sbjct: 36 VEAQGDNADAAGPTPTT----------APHPQASASLYVGELDPSVTEAMLFELFSQIGS 85
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
V S+R AL+ELN+T + G+P RIM+S RDP +RK+
Sbjct: 86 VASIR--------------------------ALEELNYTLIKGRPCRIMWSQRDPALRKT 119
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ +E+A AI
Sbjct: 120 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAI 179
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+NGMLLN+K+V+VG + K++R+S + K F NVYVKN++ T+D+ + +F FG
Sbjct: 180 KHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIANEVTDDEFRDLFAAFG 239
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+TS+++ RD +GKS+ FGFVNF + AA++VE LN K F ++ YVG+AQKK+ERE E
Sbjct: 240 DVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVEDLNNKDFRGQDLYVGRAQKKHEREEE 299
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP------ 357
L+ +E + E A+K++G+NLY+KNLDD + D+KL+ LF++FG ITS KVMRD
Sbjct: 300 LRKSYEAARLEKANKYQGVNLYIKNLDDEVDDEKLRTLFADFGPITSAKVMRDTPTDSKE 359
Query: 358 --------------------------------------NGISRGSGFVAFSTAEEASKAL 379
+G S+G GFV FS ++A+KA+
Sbjct: 360 DEEGSSEEKEKENKPEAEEKTEEKEGSEKKEKKSDKKLHGKSKGFGFVCFSNPDDATKAV 419
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG------PRMPMYPPVAPGLGQ 432
EMN +MV KPLYVALAQRK+ R+++L+ S Q R + P+ M PPV GQ
Sbjct: 420 AEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQARNQLAAAAAGLPQQYMQPPVFYAGGQ 479
Query: 433 QLFYGQGPPIIP-PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQ 491
Q + QG +P PQPG +P VQ G+ Q PGG G Q
Sbjct: 480 QPVFPQGGRGMPFPQPGMP--------------MPAVQGGRPGQFPGGYPQQGGRGVPQQ 525
Query: 492 QPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPG--------------PYDIGG 537
P P P G Y P P A GG PG P+ GG
Sbjct: 526 MPPVYGMPGQFPPGAPY---PNSGNPQFLAAIQQGGNQPGAGRGANPNGPRNNAPFPQGG 582
Query: 538 MPFRDAAFSQPMQTGALAS---ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
R AA +Q + + +L + A +P QQ+ +LGE ++P + ++ + A K+TGMLL
Sbjct: 583 ---RGAAPAQDLNSSSLIQQQLSSAAGNPGQQKQILGEVIFPKIQAMQPELAGKITGMLL 639
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
EM+ E+++L+E ALKAKV EA+ V + Q
Sbjct: 640 EMENAELVNLIEDESALKAKVDEALGVYEEYIKNQ 674
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 265/604 (43%), Positives = 368/604 (60%), Gaps = 71/604 (11%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++SLGY YVN++ + +RA++EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ ++G+P RIM+S RDP++R++G GNIFIKNL +IDNKALHDTFS FG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D LGQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K F
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL+ ++IF FG +TS + D +GKS+ FGFVNF++ + A +V+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K+ D ++ YVG+AQKK ER ELK +E + E K++G+NL+VKNLDDSI +KL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 400 KEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQGPPIIPPQPGFGYQQQLV 456
K+ RR++L+ Q++ RM A GQ +FYGQ P PP G Q
Sbjct: 420 KDVRRSQLE-QQIQARNQMRMQNAAAAAGMPGQFMSPMFYGQQPGFFPPNGRGGAQGPFP 478
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
P P +P R G P Q Q PR P G+
Sbjct: 479 PN--PQMMMP--------------RGGQMPPPQGQ------WPRAGPNGQ---------- 506
Query: 517 PDVPVAGVP---GGMLPGP--------------YDIGGMPFRDAAFSQPMQTGALASALA 559
VPV G+P GG GP GG P RD LA+ ++
Sbjct: 507 -PVPVYGMPPVYGGEFNGPNGQRQQRGAYPPNRNQKGGRPQRD-----------LAAIIS 554
Query: 560 NASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
+QQ+ +LGE LYP + E + A K+TGM+L+++ E+L LLE E +
Sbjct: 555 TVPVDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFENHF 614
Query: 616 AEAM 619
+A+
Sbjct: 615 EDAL 618
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 256/594 (43%), Positives = 355/594 (59%), Gaps = 54/594 (9%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F TSLYVGDL V ++ LY+ F+ GQ++S+RVCRD T++SLGY YVN++ EA R
Sbjct: 9 FPLTSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAER 68
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
LD +NF L GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FGNILS
Sbjct: 69 VLDTMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILS 128
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK- 215
CKVA D G S+GYGFV F++ E+A AI+K+NGMLLN K+V+VG F+ + ERE +
Sbjct: 129 CKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEK 188
Query: 216 -TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
++ NVYVKN T++ L +F +G ITS VM + DG SK FGF+ F++P+ A +
Sbjct: 189 SKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEK 248
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V +N + + YVG+AQKK ER ELK +EQ E ++ +G N+Y+KNLDD+
Sbjct: 249 AVTEMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFD 308
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+D+L++ FS+FG ITS KVM + G S+G GFV FST EEASKA+TEM+G+M+ SKP+YV
Sbjct: 309 NDRLRKEFSQFGAITSAKVMTE-GGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYV 367
Query: 395 ALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQ 454
ALAQR E+RRA L M+ M PP+ P Q
Sbjct: 368 ALAQRYEDRRAYLSAQCMQRIRHQTM------------------SPPLTTP-------QF 402
Query: 455 LVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM-----QPRMLPRGRIYR 509
L+P + P ++ M Q RP R + P +PL+ + P+ +I R
Sbjct: 403 LIPTL-PRFYNHMAQI-----RPTPRWTAQVPRLNGTYNMPLLPATPYRSTSRPQVQINR 456
Query: 510 YPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTL 569
VP+A P S P + ++ + +
Sbjct: 457 SARPITGQQVPIA---------------RPNSKYTASAPPRGVSVGVGNGGDPGADDKRM 501
Query: 570 LGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
LGE +Y ++++ + A K+TGMLLE+D +E+ L+ + +LKAKV EA+ VL+
Sbjct: 502 LGERMYRVIEKTYPEIAGKITGMLLEIDISELKALVNNEGSLKAKVEEAVAVLQ 555
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/388 (56%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMR 390
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/576 (45%), Positives = 347/576 (60%), Gaps = 71/576 (12%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 6 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 65
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 66 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 124
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 125 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 184
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 185 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 244
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 245 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 303
Query: 392 LYVALAQRKEERRARLQFSQMR-------------------PPVG----------PRMPM 422
LYVALAQRKEER+A L M+ PP G R
Sbjct: 304 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 363
Query: 423 YPP------------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPM 467
YPP A G F I P P+P F MRP + VP
Sbjct: 364 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPR 416
Query: 468 VQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG 527
V Q+ + G P A P + R +P+ Y+Y G P + P
Sbjct: 417 VMSTQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQV 471
Query: 528 MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
+ P A Q AS LA+A P++Q+ +LGE L+PL+ + A
Sbjct: 472 TMQQP-----------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAG 520
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 521 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 556
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 41 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 98
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 99 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 158
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 159 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 218
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 219 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 277
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 278 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 327
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 128 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 184
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 185 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 244
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 245 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 303
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 304 LYVALAQRKEERQA-----HLTNQYMQRMA 328
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/576 (45%), Positives = 347/576 (60%), Gaps = 71/576 (12%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 392 LYVALAQRKEERRARLQFSQMR-------------------PPVG----------PRMPM 422
LYVALAQRKEER+A L M+ PP G R
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 358
Query: 423 YPP------------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPM 467
YPP A G F I P P+P F MRP + VP
Sbjct: 359 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPR 411
Query: 468 VQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG 527
V Q+ + G P A P + R +P+ Y+Y G P + P
Sbjct: 412 VMSTQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQV 466
Query: 528 MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA 587
+ P A Q AS LA+A P++Q+ +LGE L+PL+ + A
Sbjct: 467 TMQQP-----------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAG 515
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 516 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 551
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 93
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 94 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 153
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 154 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 214 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 272
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 273 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 123 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 179
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 299 LYVALAQRKEERQA-----HLTNQYMQRMA 323
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 260/567 (45%), Positives = 346/567 (61%), Gaps = 59/567 (10%)
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNIL
Sbjct: 87 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 146
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
SCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 147 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 205
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA
Sbjct: 206 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 265
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I
Sbjct: 266 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 325
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLY
Sbjct: 326 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 384
Query: 394 VALAQRKEERRARLQFSQMR----------PPVGPRMP---MYPPVAPGLGQQLFYGQGP 440
VALAQRKEER+A L M+ P + P P + P + Y
Sbjct: 385 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPPSGYFMAAIPQTQNRAAYYPAS 444
Query: 441 PIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP----- 495
I +P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 445 QIAQLRPSPRWTAQ---GARPHPFQNM--PGAI--RPAAPRPPFSTMRPASSQVPRVMST 497
Query: 496 ---------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYDIG 536
M PR P R Y+Y G P + P + P
Sbjct: 498 QRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQP---- 553
Query: 537 GMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEM 596
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+
Sbjct: 554 -------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEI 606
Query: 597 DQTEVLHLLESPEALKAKVAEAMEVLR 623
D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 607 DNSELLHMLESPESLRSKVDEAVAVLQ 633
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 120 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 177
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + F FG
Sbjct: 178 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 237
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 238 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 297
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 298 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 356
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 357 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 406
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S + S G+G+V++ +
Sbjct: 207 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 263
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 264 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 323
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 324 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 382
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 383 LYVALAQRKEERQA-----HLTNQYMQRMA 407
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 265/604 (43%), Positives = 368/604 (60%), Gaps = 71/604 (11%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++SLGY YVN++ + +RA++EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ ++G+P RIM+S RDP++R++G GNIFIKNL +IDNKALHDTFS FG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D LGQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K F
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL+ ++IF FG +TS + D +GKS+ FGFVNF++ + A +V+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K+ D ++ YVG+AQKK ER ELK +E + E K++G+NL+VKNLDDSI +KL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSEKLE 359
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 400 KEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQGPPIIPPQPGFGYQQQLV 456
K+ RR++L+ Q++ RM A GQ +FYGQ P PP G Q
Sbjct: 420 KDVRRSQLE-QQIQARNQMRMQNAAAAAGMPGQFMLPMFYGQQPGFFPPNGRGGAQGPFP 478
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
P P +P R G P Q Q PR P G+
Sbjct: 479 PN--PQMMMP--------------RGGQMPPPQGQ------WPRAGPNGQ---------- 506
Query: 517 PDVPVAGVP---GGMLPGP--------------YDIGGMPFRDAAFSQPMQTGALASALA 559
VPV G+P GG GP GG P RD LA+ ++
Sbjct: 507 -PVPVYGMPPVYGGEFNGPNGQRQQRGAYPPNRNQKGGRPQRD-----------LAAIIS 554
Query: 560 NASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
+QQ+ +LGE LYP + E + A K+TGM+L+++ E+L LLE E +
Sbjct: 555 TVPVDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFENHF 614
Query: 616 AEAM 619
+A+
Sbjct: 615 EDAL 618
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/574 (45%), Positives = 345/574 (60%), Gaps = 71/574 (12%)
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNIL
Sbjct: 2 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 61
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
SCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 62 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 120
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA
Sbjct: 121 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 180
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I
Sbjct: 181 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 240
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP Y
Sbjct: 241 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFY 299
Query: 394 VALAQRKEERRARLQFSQMR-------------------PPVG----------PRMPMYP 424
VALAQRKEER+A L M+ PP G R YP
Sbjct: 300 VALAQRKEERQAHLTNQHMQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYP 359
Query: 425 P------------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQ 469
P A G F I P P+P F MRP + VP V
Sbjct: 360 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-------MRPASSQVPRVM 412
Query: 470 PGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
Q+ + G P A P + R +P+ Y+Y G P + P +
Sbjct: 413 STQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTM 467
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
P A Q AS LA+A P++Q+ +LGE L+PL+ + A K+
Sbjct: 468 QQP-----------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKI 516
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 517 TGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 550
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 35 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 92
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 93 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 152
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 153 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 212
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 213 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 271
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K +YV AQ+K ER+ L + Q +
Sbjct: 272 FVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQRM 321
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 20/194 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 122 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 178
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 179 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 238
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 239 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 297
Query: 198 VFVGPFLRKQERES 211
+V RK+ER++
Sbjct: 298 FYVALAQRKEERQA 311
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/404 (51%), Positives = 293/404 (72%), Gaps = 4/404 (0%)
Query: 7 QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
QP AA P P G A + A S SLYVG+LD +V +S L+++FN +G V
Sbjct: 11 QPVPEQVAAAAPPPL--GYAASAPTHGANTATSASLYVGELDPTVTESMLFEIFNMIGPV 68
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD TRRSLGY YVNY A + RAL++LN++ + +P RIM+S RDP +RK+G
Sbjct: 69 ASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSSIKNRPCRIMWSQRDPALRKTG 128
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GNIFIKNLD+ IDNKALHDTF+ FGN+LSCKVATD G S+GYGFV ++ E+A++AI
Sbjct: 129 QGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIK 188
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGMLLNDK+V+VGP + ++ER+S D+ R F N+YVKN+ T+++ + +F ++G
Sbjct: 189 SVNGMLLNDKKVYVGPHISRKERQSKIDEMRAHFTNLYVKNIDPEVTDEEFENLFKQYGQ 248
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
+ S+ + RD G++ FGFVNF+ ++A ++V+AL+ F ++ YV +AQKK ERE EL
Sbjct: 249 VQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLYVARAQKKAEREAEL 308
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
+ +++Q+ +E +K++G+NLY+KNL+D + D+KL+ F FGTITSC+VMRD G S+G
Sbjct: 309 RKQYDQARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRDERGKSKGF 368
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
GFV +S +EA+KA+ EMN KM+ SKPLYV+LAQRKE RR +L+
Sbjct: 369 GFVCYSAPDEATKAVAEMNNKMIGSKPLYVSLAQRKEIRRQQLE 412
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/370 (58%), Positives = 282/370 (76%), Gaps = 4/370 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 398 QRKEERRARL 407
QRKEER+A L
Sbjct: 369 QRKEERQAHL 378
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/390 (56%), Positives = 288/390 (73%), Gaps = 4/390 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAP 428
RKEER+A L M+ R P + P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINP 399
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 265/585 (45%), Positives = 360/585 (61%), Gaps = 49/585 (8%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GGV + S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD +++SLGY YVNY
Sbjct: 54 GGVAEN----SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNY 109
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ + +A+DELN++ + +P RIM+S RDP+ R+SG GNIFIKNL +IDNKALHDTF
Sbjct: 110 HKFEDGEKAIDELNYSLIENRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTF 169
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FG ILSCKVATD LGQS+ +GFV ++ E+A++AI+ +NGMLLND++V+VG + K++
Sbjct: 170 SAFGRILSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKD 229
Query: 209 RESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
RES + K + N+YVKN+ +E + + +F +G ITS + +D DGKSK FGFVN+
Sbjct: 230 RESKFEEMKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNY 289
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
++ A +VEALN K+ + ++ YVG+AQKK ER ELK ++E E K++G+NL+V
Sbjct: 290 EEHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFV 349
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLDD I +KL+E F FGTITS KVM D G SRG GFV FST EEA+KA+TEMN +M
Sbjct: 350 KNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRM 409
Query: 387 VVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 446
V KPLYVALAQRK+ RR++L+ Q++ RM A GQ + PP+ Q
Sbjct: 410 VNGKPLYVALAQRKDVRRSQLE-QQIQARNQMRMQNAAAAAGFPGQFM-----PPMYYGQ 463
Query: 447 PGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGR 506
GF PG R N P P Q R G Q QP P PR
Sbjct: 464 QGF-----FPPGGRGNAPFPGPNP-QMMMRRG----------QPGQPFPEQWPR------ 501
Query: 507 IYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA------LASALAN 560
P G N VPV G+P P + P Q G LA+ +++
Sbjct: 502 ----PGGPNGQPVPVYGIP-PQFPDQRAQQQQQQQQQRGYYPGQAGVKVPAKDLAAIISS 556
Query: 561 ASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEV 601
PEQQ+ +LGE LYP + E + A K+TGM+L ++ E+
Sbjct: 557 VPPEQQKRILGEELYPRIVATGKAQEPEAAGKITGMMLGLENQEI 601
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 278/630 (44%), Positives = 375/630 (59%), Gaps = 67/630 (10%)
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+G V S+RVCRD TRRSLGY YVN+ A + RAL++LN+TP+ GKP RIM+S RDP +
Sbjct: 2 IGSVASIRVCRDAVTRRSLGYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQRDPAL 61
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RK+ GNIFIKNLD+SIDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A+
Sbjct: 62 RKTSLGNIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEAAE 121
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFG 240
+AI +NGMLLNDK V+VG + ++ER++ D+ R + N+YVK L+ +E + ++F
Sbjct: 122 AAIQAVNGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFA 181
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
++G +TS + D DGKSK FGFVNF D + AA+++ L+ + + YV +AQKK ER
Sbjct: 182 KYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQKKGER 241
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK +EQ + + K++G+NLYVKNL+D + ++K+ F+ FGTITS K+MRD G
Sbjct: 242 EEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMRDEKGA 301
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL-----QFSQMRPP 415
S+G GFV FS+ +EA+KA+TE+NGKM KPLYV+LAQRK+ R+ +L Q +Q+R
Sbjct: 302 SKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQRKDVRKQQLEAQLAQRNQIRSQ 361
Query: 416 ------VGPRMPMY--PPVAPGLGQQLFYGQGPPIIPPQPGFGY--QQQLVPGMRPNYFV 465
+ P MP Y PP Q++Y GP P Q G Y Q RP Y
Sbjct: 362 QLAASGIPPNMPPYGMPP------NQMYY-PGPGGYPQQRGMMYPPQGMPGMPPRPRYAP 414
Query: 466 PMVQPG------QQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDV 519
PG Q GP + P M M P+ R PPG P+
Sbjct: 415 AGAMPGMPMGYPPQGYPGPYGPGRPGPQSRYSMPPNGMPNGMPPQQMGMRGPPGQMGPN- 473
Query: 520 PVAGVPGGMLPGPYDIGGMPFRDAAF----------------SQPMQTGA-------LAS 556
GGM P P G P +QP Q GA A+
Sbjct: 474 ------GGMPPRP----GQPLMQGQPPRAGPPAAAGARAGFKAQPAQRGAPENAAQQTAA 523
Query: 557 ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 616
ALANASP +Q+ ++GE LYPL+ + + A K+TGMLLEMD E+L L++S EAL K+A
Sbjct: 524 ALANASPAEQKQIIGEMLYPLILETRPEQAGKITGMLLEMDAGELLMLIDSREALDVKIA 583
Query: 617 EAMEVLRNVAQQQ---ATGPSPTDRVASLS 643
EA+ VL QQ G +PT+ A+++
Sbjct: 584 EALAVLEQYQAQQEGGEQGAAPTEEPAAVA 613
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 150/288 (52%), Gaps = 19/288 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ L+D F G ++S +V D S GYG+V+Y A A+
Sbjct: 68 NIFIKNLDESIDNKALHDTFAAFGNILSCKVALD-ENGLSKGYGFVHYEGGEAAEAAIQA 126
Query: 101 LNFTPLNGKPIRIMYSY----RDPTIR--KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN K + + + R I +S N+++K L I + F+ +G +
Sbjct: 127 VNGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFAKYGQV 186
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
S + D G+S+G+GFV F + E+A A+ +L+ + ++V +K ERE
Sbjct: 187 TSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQKKGEREEELK 246
Query: 215 KT----RFN--------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
K+ +++ N+YVKNL + E+ + F FG ITST +MRD G SK FG
Sbjct: 247 KSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMRDEKGASKGFG 306
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
FV F PD+A ++V LNGK F K YV AQ+K R+ +L+ + Q
Sbjct: 307 FVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQRKDVRKQQLEAQLAQ 354
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 19/188 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+LYV L +++++ +LF + GQV S + D +S G+G+VN+ A +AL
Sbjct: 160 TNLYVKGLAPEISEAEFSELFAKYGQVTSAVLQVD-QDGKSKGFGFVNFADHEAAAKALT 218
Query: 100 ELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNK 142
EL+ + G+ + + + + D +++ G N+++KNL+ +D +
Sbjct: 219 ELHDSEHKGQTLYVSRAQKKGEREEELKKSYEQQKYDKSLKYQGV-NLYVKNLEDDMDEE 277
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
+ F+ FG I S K+ D G S+G+GFV F + + A A+ +LNG + K ++V
Sbjct: 278 KVTAEFAAFGTITSTKIMRDEKGASKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSL 337
Query: 203 FLRKQERE 210
RK R+
Sbjct: 338 AQRKDVRK 345
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 279/372 (75%), Gaps = 2/372 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 55 SASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 114
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + + RIM+S RDP +RK+G GNIFIKNLD+ ID+KALHDTF+ FGN+LSCK
Sbjct: 115 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCK 174
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G+SRG+GFV +D E+A +AI +NGMLLNDK+VFVG ++ K+ER++ D K+
Sbjct: 175 VATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKS 234
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKNL T+D+ +F +FG +TS V +D +GKSK FGFVNF D + A +V
Sbjct: 235 QFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAV 294
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+AL+ + + K+ +V +AQKK ERE EL+ +EQ+ E K++G NLY+KNL+D + DD
Sbjct: 295 DALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDD 354
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FGTITSCK+MRD G S+G GFV +S+ EEA+KA+ EMN KM+ SKPLYV+
Sbjct: 355 KLRAEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSP 414
Query: 397 AQRKEERRARLQ 408
AQR+E RR +L+
Sbjct: 415 AQRREVRRQQLE 426
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/600 (43%), Positives = 348/600 (58%), Gaps = 89/600 (14%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N A+
Sbjct: 41 SASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAI 100
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+ P+ G P RIM+S RDP++RK G+GNIFIKNL IDNKALHDTFS FGNILSCK
Sbjct: 101 EKLNYAPIKGVPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCK 160
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
+ATD G SRG+GFV F+++E+AK AID +NGMLLN ++V+V + K++R+S D K
Sbjct: 161 IATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAKA 220
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+ T +++ ++ F + G ITS + +D +GK + FGFVN+++ +DAA++V
Sbjct: 221 NFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAV 280
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN F + +VG+AQKK+ER ELK ++E E +K++G+NL+VKNLDD+I D
Sbjct: 281 EELNETDFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQ 340
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 341 KLEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 400
Query: 397 AQRKEERRARL-----QFSQMR----------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
AQRK+ RR++L +QMR G R PP +FYG PP
Sbjct: 401 AQRKDVRRSQLAQQIQARNQMRYQQVTAAAAAAAAGMRGQFMPP--------MFYGVMPP 452
Query: 442 IIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM 501
P G QQ G P VP P+
Sbjct: 453 RGVPFNGPNPQQMAAMGGMPKNGVP--------------------------------PQQ 480
Query: 502 LPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANA 561
G +Y PP G P Q M+ GA A+
Sbjct: 481 FRNGPVYGVPP---------QGAPQQ------------------GQFMRNGAGANQFYQ- 512
Query: 562 SPEQQRTLLGENLYPLV--DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
++QR +LGE LY V + + A K+TGM+L++ EV+ LLES E EA
Sbjct: 513 --QKQRQVLGEQLYKKVFAKTSDEEAAGKITGMILDLPSQEVVPLLESDELFDQHFKEAF 570
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/436 (52%), Positives = 300/436 (68%), Gaps = 31/436 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 438
RKEER+A L + S MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 439 GPPIIPPQPGFGYQQQ 454
G P+ P QP + Q
Sbjct: 424 G-PVTPTQPAPRWTSQ 438
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/611 (43%), Positives = 375/611 (61%), Gaps = 35/611 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V D QL+D F+ + SVR+CRD ST RSL YGYVN+ + +AT A++
Sbjct: 15 SLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEV 74
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + LNG+ IR+M+S RD RKSG GN+F+KNL SI++ L + F FGN+LS KVA
Sbjct: 75 MNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVA 134
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
T G+S+GYGFVQF++EESA +AI+ LNG + DKQ++VG F+RK +R ++ N
Sbjct: 135 TSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYTN 194
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YVKNL E+ L++ F EFG I+S + RD +G S+ FGF+NF++ DDA R++E LN
Sbjct: 195 LYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLN 254
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G + K Y+ +AQKK ERE L+ +E+ KE K++G N+YVKN+DD ++D++L+E
Sbjct: 255 GSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRE 314
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS+FGTITS K+MRD GI++G GFV FS +EA +A+ + G M KPLY+A+AQRK
Sbjct: 315 RFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRK 374
Query: 401 EERRA--RLQFSQMRPPV-GPRMPMYPPVAPGLGQQLFYGQGPPIIPP---QPGFGYQ-Q 453
E+R+ +LQF+Q + GP ++P P P ++PP +PG +Q
Sbjct: 375 EDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPA-----PGVVPPVASRPGLMFQPL 429
Query: 454 QLVPGMRPNYFVPMVQPGQQ----------NQRPGGRRSG-TGPM---QQAQQPIPLMQP 499
+ PG RPN + +PG Q +++P R GP+ Q Q + MQ
Sbjct: 430 GMRPGWRPNTYTSPARPGFQPSPLPIIPTASRQPRQNRGKMNGPILSHQNGVQSVSYMQN 489
Query: 500 RMLPRGRIYRYPPGCNIPDV-PVAGVPGGMLPGPYDIGGMPFRDAAF------SQPMQTG 552
+ N V VP G AAF SQ Q
Sbjct: 490 SQDANQSVVTAKSSSNQQWTGQVKYVPNARSCETNKTSGASAAAAAFNSVGDVSQGSQI- 548
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
L+S LA++ P+QQ+ +LGE+LYPLV + + D AAK+TGMLLEMD +E+L LLESPE+L
Sbjct: 549 -LSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLESPESLA 607
Query: 613 AKVAEAMEVLR 623
AKV EA++VL+
Sbjct: 608 AKVEEAVQVLK 618
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 167/300 (55%), Gaps = 23/300 (7%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
DAR+ +++V +L S+N L +LF + G V+S +V +S GYG+V + +
Sbjct: 94 ADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATS-DDGKSKGYGFVQFESE 152
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYR-------DPTIRKSGAGNIFIKNLDKSIDNKAL 144
A A++ LN + K I + R +P I+ + N+++KNLD I + L
Sbjct: 153 ESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYT---NLYVKNLDPEIGEEHL 209
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
+ FS FG I S ++ D G SRG+GF+ F+N + AK A++ LNG L K +++
Sbjct: 210 QEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQ 269
Query: 205 RKQERESTAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+K ERE K + +NVYVKN+ + T+++L++ F +FG ITS+ +MR
Sbjct: 270 KKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMR 329
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D G +K FGFV F +PD+A R+V L G F K Y+ AQ+K +R+M+LK +F Q L
Sbjct: 330 DDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRL 389
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/588 (44%), Positives = 350/588 (59%), Gaps = 75/588 (12%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD SV ++ LYDLF+ +G V S+RVCRD T+ SLGY YVN++ + A+++L
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N+TP+ G+P RIM+S RDP++RK G+GN+FIKNL +IDNKALHDTFS FGNILSCK+AT
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFGNILSCKIAT 161
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D G+SR +GFV F+ EE+AK AID +NGMLLN +V+V P + K++R+S D K+ F
Sbjct: 162 DETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKKDRQSKLDEVKSNFT 221
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKN+ TT+++ +K+F +G ITS + RD +GK + FGFVNF+D + A ++ E L
Sbjct: 222 NVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEEL 281
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N F ++ YVG+AQKKYER ELK ++E S E K++G+NL+VKNLDDS+ D KL+
Sbjct: 282 NDTDFKGQKLYVGRAQKKYERLQELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKLE 341
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E F+ FGTITS KVMRD G S+G GFV FST EEA+KA+TE N ++V KPLYVA+AQR
Sbjct: 342 EEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 401
Query: 400 KEERRARLQ-----FSQMRPPVGPRMPMYPPVAPG-LGQQLFYGQGPPIIPPQPGFGYQQ 453
KE RR++L +QMR PG Q +FYG ++PP+
Sbjct: 402 KEVRRSQLAQQIQARNQMRYQQATAAAAAAAGMPGQFMQPMFYG----VMPPRG------ 451
Query: 454 QLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPG 513
VP PN P Q G ++G P Q + P G +Y PP
Sbjct: 452 --VPFNGPN-------PQQMAAMNGIPKNGVPPQQFGR-----------PAGPMYGVPP- 490
Query: 514 CNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGEN 573
GP G P F ++QR LGE
Sbjct: 491 ----------------QGPQ--GAFPRNGNQFFH----------------QKQRQALGEQ 516
Query: 574 LYPLVDQLEHDN--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
LY V D A K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 517 LYKRVSAKTQDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEAF 564
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD SV+D +L + F G + SV+V RD S G+G+V ++ EAT
Sbjct: 320 KYQGVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRD-EAGNSKGFGFVCFSTPEEAT 378
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 379 KAITEKNQQIVAGKPLYVAIAQRKEVRRSQLAQQIQARN 417
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 274/604 (45%), Positives = 380/604 (62%), Gaps = 38/604 (6%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +R+SG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG S VMRD++G+S+ FGF+NF+ ++A ++V+
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+DD+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRA--------RLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF 449
QRKEER+A RL S + P + P V Q ++Y I P QP
Sbjct: 369 QRKEERKAILTNQYRRRLSRSVLSSFQQPTSYLLPAVHQSTTQTMYYSSA-SIAPMQPDP 427
Query: 450 GYQQQLVPGMRPNYFVP----MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRG 505
+ Q P+ P +VQP P QA +P Q R++ G
Sbjct: 428 RWTAQ---PHGPSSTCPPAASVVQPLSTAPHPCIH---LSSASQASSQVPHTQ-RVVNIG 480
Query: 506 RIYRYP--PGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASP 563
P G IP P+ G + G+ +++ P S L A
Sbjct: 481 TQTTGPGGEGSCIPGQPLLAHRGS--SAVHSAHGV--QESTVYVPGHQPLTVSMLDAAPL 536
Query: 564 EQQRTLLGENLYPLVDQLEHDNAA----KVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
+Q+ ++GE LY L+ HD A K+TGMLLEMD E+L LLESPE+L AK+ EA+
Sbjct: 537 HEQKQMIGERLYSLI----HDACAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAV 592
Query: 620 EVLR 623
VL+
Sbjct: 593 AVLK 596
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 116/213 (54%), Gaps = 25/213 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + +++ L DLF+Q G+ SV+V RD S +S G+G++N+ E
Sbjct: 185 ARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R ++ R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI++ L + FST+G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSINDDRLKEVFSTYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
++V RK+ER K N Y + LS +
Sbjct: 362 PLYVALAQRKEER-----KAILTNQYRRRLSRS 389
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 239/435 (54%), Positives = 306/435 (70%), Gaps = 19/435 (4%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGD+ V ++ L+++FN +G V S+RVCRD TRRSLGY YVN++ +A R
Sbjct: 42 FHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAER 101
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NFT + G P RIM+S RDP++RKSG GNIF+KNLD SIDNKAL+DTFS FGNILS
Sbjct: 102 ALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILS 161
Query: 157 CKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
CKVA + + G S+GYG+V ++ E+A AI K+NGML+ +VFVG F ++Q+R D
Sbjct: 162 CKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQFQKRQDRPDADDW 221
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG--KSKCFGFVNFDDPDDAA 273
T N YVKN+ T+ DL K F FG + S VM+D ++ FGFVN+++ D A
Sbjct: 222 T---NCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAH 278
Query: 274 RSVEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
++V+ALNGK + D E YVGKAQK+ ERE EL+ KFEQ E +K++G+NLYVKN
Sbjct: 279 KAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKN 338
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LDD +SDD+L+E F+E GTITS +VMRDPNG SRG GFV FST EEA+KA+ EMNGK++
Sbjct: 339 LDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLIS 398
Query: 389 SKPLYVALAQRKEERRARL--QFSQMRP--PVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 444
KP+YVALAQRKE RRA+L Q +Q R VG MPM P G +FYGQ P +P
Sbjct: 399 GKPVYVALAQRKEVRRAQLEAQHAQQRAGMVVGRGMPMGQPPMYG-AAPMFYGQ-PGQLP 456
Query: 445 PQP--GFGYQQQLVP 457
PQ GF Y QQ++P
Sbjct: 457 PQARQGFMYPQQMMP 471
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/437 (50%), Positives = 296/437 (67%), Gaps = 18/437 (4%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDL ++ LY F+++G V+S R+CRDL+TR SLGYGYVN+ +A RAL+
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN+ G+PIRIM+S RDP++RKSG GNIFIKNLDK+ID K L+DTFS G ILSCK+
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKILSCKI 120
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A D G S+GYGFV F+ EE A+ AI+K+NGM++ND+ V+VG F+ +R+S + K RFN
Sbjct: 121 AMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSASGKLRFN 180
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKN TT++ L+ +F EFG I S V ++ +GKSK FGFV F DPD A ++V +
Sbjct: 181 NIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVM 240
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF-EGLNLYVKNLDDSISDDKL 338
+GK+ + + Y +AQ+K ER+ ELK + E+ E K+ G+NLYVKNLDD+I D++L
Sbjct: 241 HGKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERL 300
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE FS +G ITS KVM D NG S+G GFV F+ E+A++A+TEMN +V SKPLYVALAQ
Sbjct: 301 KEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQ 360
Query: 399 RKEERRARL------QFSQMRPPVGPRMPM----------YPPVAPGLGQQLFYGQGPPI 442
RKE+RRA+L + +Q R PV +P +PP A Q+ +Y +
Sbjct: 361 RKEDRRAKLIAEHQQRLAQYRSPVTQMLPAAAAHAAAPSYFPPTAFPQAQR-YYHPTSAV 419
Query: 443 IPPQPGFGYQQQLVPGM 459
I QP + + GM
Sbjct: 420 ISSQPRWNRAAAMSGGM 436
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
SALA S E Q+ LGE L+PLV ++ A K+TGMLL +D EV+HLLES E+L+AK+
Sbjct: 611 SALAQLSEEDQKRTLGERLFPLVQEMYPTLAQKLTGMLLGVDNAEVIHLLESKESLRAKL 670
Query: 616 AEAMEVLRN 624
E + VL+
Sbjct: 671 EEGISVLKT 679
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/541 (45%), Positives = 335/541 (61%), Gaps = 89/541 (16%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A+ AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN++ ++D+ +++F +G ITS+++ RD DGKS+ FGFVN+ + A ++V
Sbjct: 238 NFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLY+KNLDD + D+
Sbjct: 298 DELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDE 357
Query: 337 KLKELFSEFGTITSCKVMRD-PN------------------------------------- 358
KL+ +FSEFG ITS KVMRD P+
Sbjct: 358 KLRHMFSEFGPITSAKVMRDAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDKKF 417
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-----QMR 413
G S+G GFV FS ++A+KA+ EM+ +M+ KPLYVALAQRK+ R+++L+ S Q+R
Sbjct: 418 GKSKGFGFVCFSNPDDATKAVAEMSQRMINGKPLYVALAQRKDVRKSQLEASIQARNQLR 477
Query: 414 PPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIP--------PQPGFGYQQQLVPGM 459
P+ M PPV FYGQ P +P PQPG G V G
Sbjct: 478 MQQAAAAAGMPQQYMQPPV--------FYGQQPGFMPQGGRGMPFPQPGMGMAG--VQGG 527
Query: 460 RPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDV 519
RP F PG Q GGR G P Q M P M G ++PP P
Sbjct: 528 RPGQF-----PGYPQQ--GGR--GGVPQQ--------MPPNMYMPG---QFPPQYGQPGT 567
Query: 520 P 520
P
Sbjct: 568 P 568
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
L L++A P QQ+ +LGE ++P + + + A K+TGMLLEMD TE++ L+E ALKA
Sbjct: 646 LQQQLSSAPPAQQKQILGEVIFPKIQAINAELAGKITGMLLEMDNTELISLIEDDAALKA 705
Query: 614 KVAEAMEVLRNVAQQQAT 631
KV EA+ V + Q T
Sbjct: 706 KVEEALAVYDEYVKSQGT 723
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/582 (42%), Positives = 346/582 (59%), Gaps = 73/582 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+LD +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+++
Sbjct: 36 SLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQ 95
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN+TP+ G+ RIM+S RDP +RK G+GNIFIKNL IDNKAL +TFS FGNILS K+A
Sbjct: 96 LNYTPIKGRLCRIMWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIA 155
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
TD G+S+G+GFV F++E SAK AID LNGMLLN ++++V P L ++ER+S ++T+ F
Sbjct: 156 TDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHF 215
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN++ TT+++ ++F ++G + S+++ + DGK K FGFV+F+ +DAA++VE
Sbjct: 216 TNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEE 275
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG +F D+ +V +AQKKYER ELK ++E S E K++G+NL+VKNLDDSI D+KL
Sbjct: 276 LNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKL 335
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE F+ +GTITS +VMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+AQ
Sbjct: 336 KEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 395
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPG 458
RK+ RR SQ+ + R M A G +PP + G
Sbjct: 396 RKDVRR-----SQLAQQIQARTQMRYQQATAAAAAAAAGIPGQFMPP---------MFYG 441
Query: 459 MRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPD 518
+ P VP GP Q +P Q +R PG +P
Sbjct: 442 VMPPRGVPF----------------NGPNPQQMNGVPPQQ---------FRNGPGYGMP- 475
Query: 519 VPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV 578
P G P +P + + QR LGE LY V
Sbjct: 476 -PQGGFPRNGVPNQF----------------------------YQKNQRQALGEELYKKV 506
Query: 579 DQLEHDN--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
D A K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 507 SAKNADEEAAGKITGMILDLPPQEVVSLLENDELFEQHFKEA 548
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 17/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +++L D + +LF + G V+S + + + G+G+V++ +A +A++
Sbjct: 216 TNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLK-GFGFVDFEKHEDAAKAVE 274
Query: 100 ELNFTPLNGKPI---RIMYSY-------------RDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN T + + R Y R + K N+F+KNLD SID++
Sbjct: 275 ELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEK 334
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F+ +G I S +V G+S+G+GFV F E A AI + N ++ K ++V
Sbjct: 335 LKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 394
Query: 204 LRKQERES 211
RK R S
Sbjct: 395 QRKDVRRS 402
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD S++D +L + F G + SVRV R +S G+G+V ++ EAT
Sbjct: 315 KYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMR-TDNGKSKGFGFVCFSTPEEAT 373
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNI 130
+A+ E N + GKP+ + + R R A I
Sbjct: 374 KAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 408
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/580 (45%), Positives = 347/580 (59%), Gaps = 72/580 (12%)
Query: 91 AH-EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
AH A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS
Sbjct: 61 AHGRAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNILSCKV D G S+GYGFV F+ +E+A+ +K+NGMLLND++VFVG F ++ER
Sbjct: 121 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERVSEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 210 EST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
E+ A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFE 239
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVK
Sbjct: 240 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK 299
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 300 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 388 VSKPLYVALAQRKEERRARLQFSQMR-------------------PPVG----------P 418
+KPLYVALAQRKEER+A L M+ PP G
Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418
Query: 419 RMPMYPP------------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NY 463
R YPP A G F I P P+P F MRP +
Sbjct: 419 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-------MRPASS 471
Query: 464 FVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAG 523
VP V Q+ + G P A P + R +P+ Y+Y G P +
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNA 526
Query: 524 VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEH 583
P + P A Q AS LA+A P++Q+ +LGE L+PL+ +
Sbjct: 527 QPQVTMQQP-----------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHP 575
Query: 584 DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 576 TLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A R ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERVSEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 362 PLYVALAQRKEERQA-----HLTNQYMQRMA 387
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/416 (54%), Positives = 292/416 (70%), Gaps = 7/416 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV ++ + A +V+A
Sbjct: 183 TNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ + G+NLYVKNLDDSI D++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPV-APGLGQQLFYGQGPPIIPPQPGFGYQ 452
QRKEER+A L MR G RM + P F P + P Q FG Q
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQLFQPNTASGFFV---PTMAPSQRFFGPQ 415
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 56/74 (75%)
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
Q +AS LANA P++ + +LGE LYP+++++ A K+TGMLLE++ +E+LH+LE E
Sbjct: 563 QEKLIASLLANAKPQEAKQILGERLYPMIERMHAALAGKITGMLLEIENSELLHMLEDQE 622
Query: 610 ALKAKVAEAMEVLR 623
ALKAKV EA+ VL+
Sbjct: 623 ALKAKVEEAVAVLQ 636
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/369 (58%), Positives = 282/369 (76%), Gaps = 4/369 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARL 407
RKEER+A L
Sbjct: 370 RKEERQAHL 378
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 272/617 (44%), Positives = 365/617 (59%), Gaps = 47/617 (7%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V+DS L D F++ + SVRVC+D ST +SL YGY+N+ + +A RA++
Sbjct: 12 ASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIE 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N + LNGK +R+M+S RDP RKS GN+F+KNL +SIDN L D F +GNILS KV
Sbjct: 72 LKNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKV 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
T G+S+GYGFVQF++EES+K AI+KLNG + DK+++VG F++K +R R+
Sbjct: 132 VTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYT 191
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL +E L++ F FG I S + +D +G SK FGFVN+D+PDDA +++EA+
Sbjct: 192 NLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAM 251
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + K YV +AQKK ERE L +FE+ KE K++G N+YVKN+DD +SD++L+
Sbjct: 252 NGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELR 311
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS GTITS K+MRD GIS+G GFV FST EEA+KA+ +G M KPLYVALAQR
Sbjct: 312 DHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQR 371
Query: 400 KEERRARLQFSQMRPPV---GPRMPMYPPVAPGLGQQLFYGQGPPI--IPPQPGFGYQQ- 453
KE+R+A+LQ + GP + P P +Y I +PP+ G YQ
Sbjct: 372 KEDRKAQLQLQYAQQLARLSGPSTAIIPSGYP----PYYYAASGVISHVPPRAGLMYQHL 427
Query: 454 QLVPGMRPNYFVPMVQPGQQNQRP-----------------------GGRRSGTGPMQQA 490
L PG N F P + QQ+ P G SGT Q
Sbjct: 428 ALRPGWGANGFAPPARSFQQSPVPAVSNNTRQHRQNRGKLNGNSIAQGNTHSGTYLPQAQ 487
Query: 491 QQPIPLMQPR---MLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQ 547
Q P++ R R RY P DV ++
Sbjct: 488 QISQPVISSRDSSTQQRTGQARYIPSGRQRDVE-----------KGSGSSSVGSNSGRGG 536
Query: 548 PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLES 607
+ L S LA A+PEQQ+ +LGE+LY LV +L+ AAK+TGMLLEMD E+L LLES
Sbjct: 537 SQGSEMLHSLLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLES 596
Query: 608 PEALKAKVAEAMEVLRN 624
PE+L AKV EA++VL+N
Sbjct: 597 PESLSAKVEEAVQVLKN 613
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 157/290 (54%), Gaps = 27/290 (9%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +L+V +L S++++ L D+F + G ++S +V +S GYG+V + +
Sbjct: 93 DARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTS-EDGKSKGYGFVQFESEE 151
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA---------GNIFIKNLDKSIDNKA 143
+ A+++LN + K + Y ++KS N+++KNLD +
Sbjct: 152 SSKVAIEKLNGYTVADKEL-----YVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEAT 206
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS+FG I+S +A D+ G S+G+GFV +DN + AK A++ +NG L K ++V
Sbjct: 207 LQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARA 266
Query: 204 LRKQERESTAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
+K ERE K + +N+YVKN+ + ++++L+ F G ITS +M
Sbjct: 267 QKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIM 326
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
RD G SK FGFV F P++A ++V +G + K YV AQ+K +R+
Sbjct: 327 RDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRKEDRK 376
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/582 (44%), Positives = 349/582 (59%), Gaps = 65/582 (11%)
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+A RAL+ +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL DTFS FG
Sbjct: 133 DAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFG 192
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
NILSCKV D G S+GYGFV F+ ++A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 193 NILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 251
Query: 213 --ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
A F NVY+KN E + LK++FG+FG S VM D G SK FGFVNF+ +
Sbjct: 252 LGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHE 311
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DA ++VE +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLD
Sbjct: 312 DAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLD 371
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +K
Sbjct: 372 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 430
Query: 391 PLYVALAQRKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPIIPPQP 447
PLY+ALAQRKEER+A L M+ R P+ P P G ++ P +P
Sbjct: 431 PLYIALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNPYQPPSG---YFMTAIPQTQNRP 487
Query: 448 GFGYQQQLVPGMRPN--YFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP--RMLP 503
+ Q+ P +RP+ + +P PG R A+ P M+P LP
Sbjct: 488 AYYPASQMAP-LRPSPRWTSQGARPHPFQNLPGAIRPAA-----ARPPFGSMRPTSSQLP 541
Query: 504 RG-----RI-----------------------------YRYPPGCNIPDVPVAGVPGGML 529
RG RI Y+Y G P V P +
Sbjct: 542 RGVGASQRIVNSSTQALGPPLGASAGAAGAPGVRMGPQYKYAAGVRNPQHHVNVQPQASV 601
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
P A Q AS LA A P++Q+ +LGE L+PL+ + A K+
Sbjct: 602 QQP-----------AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKI 650
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ ++A
Sbjct: 651 TGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 692
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 164/290 (56%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ L+D F+ G ++S +V D S GYG+V++ A RA+D+
Sbjct: 169 NIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCD--EHGSKGYGFVHFETRDAAERAIDK 226
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D+ L F FG
Sbjct: 227 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPA 286
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G S+G+GFV F+ E A+ A++++NG LN K+++VG +K ER++
Sbjct: 287 LSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELK 346
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 347 RKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 405
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K Y+ AQ+K ER+ L ++ Q +
Sbjct: 406 FVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQYMQRM 455
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 114/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L LF + G +SV+V D S S G+G+VN+ +
Sbjct: 256 AKEF--TNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGT-SKGFGFVNFERHED 312
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A++E+N LNGK I + + + D R G N+++KNLD
Sbjct: 313 AQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGV-NLYVKNLD 371
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 372 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 430
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
+++ RK+ER++ N Y++ ++
Sbjct: 431 PLYIALAQRKEERQA-----HLTNQYMQRMA 456
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/586 (43%), Positives = 345/586 (58%), Gaps = 66/586 (11%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N A A
Sbjct: 33 VSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTA 92
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++LNFTP+ GK RIM+S RDP++RK GAGNIFIKNL IDNKAL+DTFS FGNILS
Sbjct: 93 IEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSS 152
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVATD G+S+G+G+V F+ +ESA AID LNGMLLN ++++VGP L K+ERES + K
Sbjct: 153 KVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMK 212
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN++ TT+ + +++ +FG S + R +G++K FGFVNF + +DA +
Sbjct: 213 ANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKC 272
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN +F + YV +AQKKYER+ ELK ++E + E K++G+NL++KNLDDSI D
Sbjct: 273 VEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDD 332
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+E F+ +GTITS KVM NG S+G GFV FST EEA+KA+TE N ++V KPLYVA
Sbjct: 333 KKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392
Query: 396 LAQRKEERRARL-QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQ 454
+AQRK+ RR++L Q Q R Q+ + Q G Q
Sbjct: 393 IAQRKDVRRSQLAQQIQAR------------------NQMRFQQASAAAAAAAAAGMPGQ 434
Query: 455 LVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 514
+P P ++ M G P + + G M P M P G +Y PP
Sbjct: 435 FMP---PMFYGVMPPRGVPFNGPNPQMANMGAM-----PKNGMPPHQFRNGPVYGVPPQ- 485
Query: 515 NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENL 574
GG A +Q Q ++QR LGE L
Sbjct: 486 ---------------------GGFARNGPAANQFYQ-------------QKQRQALGEEL 511
Query: 575 YPLVDQLEHDN--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
Y + +D A K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 512 YKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEA 557
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 27/229 (11%)
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++L + L DKQ + E +T ++YV +L + +E L IF G +
Sbjct: 10 EQLENLSLQDKQ--------EGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAV 61
Query: 246 TSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
+S V RDA K+ + +VNF+D D A ++E LN K + +Q+
Sbjct: 62 SSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQR-------- 113
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
+ SL++ N+++KNL I + L + FS FG I S KV D G S+G
Sbjct: 114 ----DPSLRKKG----AGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGF 165
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR 413
G+V F E AS+A+ +NG ++ + +YV K+ER ++ F +M+
Sbjct: 166 GYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESK--FEEMK 212
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/427 (51%), Positives = 293/427 (68%), Gaps = 14/427 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+++SLYVGDL V+DS L F+++G V+S RVCRDL+TR+SLGYGYVN+ A +
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQ 69
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ PL G+PIRIM+S RDP++RKSG GNIFIKNLDKSI+ K L+DTFS FG ILS
Sbjct: 70 ALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ D GQS+GYGFV F+ EE A+ AI+K+N M++ D+ V+VG F+ K ER+S A K
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKV 189
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNN+YVKN T + LK++F EFG I S VM+D +GKSK FGFV + DPD A +V
Sbjct: 190 KFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-GLNLYVKNLDDSISD 335
++GK+ + + Y +AQ+K ER+ ELK K E+ E + +NLYVKNLDD+I D
Sbjct: 250 RTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDD 309
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+L+E FS G+ITS KVM+D N S+G GFV F+ E+A++A+T+MNG ++ SKPLYVA
Sbjct: 310 KRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 396 LAQRKEERRARL------QFSQMRPPVGPRMPMYPPVA-------PGLGQQLFYGQGPPI 442
LAQRKE+RRA+L + +Q R PV +P P A P Q FY +
Sbjct: 370 LAQRKEDRRAKLIEEHQQRLAQYRAPVASMIPAVPGHAAPHNYFPPAFQAQRFYHPSSAV 429
Query: 443 IPPQPGF 449
+ QP +
Sbjct: 430 LSSQPRW 436
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 24/198 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ +LYV + ++ +L ++F++ G++ S V +D + +S G+G+V Y
Sbjct: 186 ARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKD-NEGKSKGFGFVCYLDPDH 244
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------DPTIRKSGAG---------NIFIK 133
A A+ ++ + G R++Y R I K A N+++K
Sbjct: 245 AENAVRTMHGKEIEG---RVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVK 301
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD +ID+K L + FS G+I S KV D+ +S+G+GFV F N E A A+ +NG ++
Sbjct: 302 NLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTII 361
Query: 194 NDKQVFVGPFLRKQERES 211
K ++V RK++R +
Sbjct: 362 GSKPLYVALAQRKEDRRA 379
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 96/239 (40%), Gaps = 38/239 (15%)
Query: 409 FSQMRPPVGPRMPMYP------PVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPN 462
F+Q+R P G PM P P P L + Q QQ+ G R
Sbjct: 476 FAQLRTP-GVNRPMMPNGMSSMPTTPHLQTAAVFNQA----------ANQQRQATG-RQG 523
Query: 463 YFVPMV---QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR--GRIYRYPPGCNIP 517
VP V G NQRP GP P P M P+ ++ R +P
Sbjct: 524 VVVPQVLGATTGGLNQRPTAASVVAGP--------PSANPTMRPQVASQVPRAVMHSGMP 575
Query: 518 DVPVAGVPGGMLPGPYDIGGMPF-----RDAAFSQPM--QTGALASALANASPEQQRTLL 570
++ A ++ P + P+ Q SALA S Q+ L
Sbjct: 576 NITNATTNVRFHQTARNVSAQPTLVPTGNTSTLLSPLGDQGQLTISALAQLSEVDQKRAL 635
Query: 571 GENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
GE+L+P + + A K+TGMLL +D EV++LLES + L+AK E + VL + QQ
Sbjct: 636 GEHLFPRIQTMYPTLARKLTGMLLGVDNAEVINLLESDDLLRAKCEEGISVLESSQNQQ 694
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/388 (56%), Positives = 285/388 (73%), Gaps = 7/388 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F + S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSK---TLSVKVMRDPSGKSKGFGFVSYEKHED 240
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 241 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 300
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 301 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 359
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 360 LYVALAQRKEERKAHLTNQYMQRVAGMR 387
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 569 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 628
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 629 VDEAVAVLQ 637
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/607 (44%), Positives = 357/607 (58%), Gaps = 83/607 (13%)
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD R L + A RALD +NF + GKP+RIM+S RDP++RKSG GNIF
Sbjct: 220 CRDEPQRPQLPH----------AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIF 269
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
IKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGM
Sbjct: 270 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 328
Query: 192 LLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLND++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S
Sbjct: 329 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 388
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFE
Sbjct: 389 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 448
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
Q ++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV F
Sbjct: 449 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCF 507
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR---------------- 413
S+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L M+
Sbjct: 508 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPY 567
Query: 414 ---PPVG----------PRMPMYPP------------VAPGLGQQLFYGQGPPIIP--PQ 446
PP G R YPP A G F I P P+
Sbjct: 568 QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPR 627
Query: 447 PGFGYQQQLVPGMRP-NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRG 505
P F MRP + VP V Q+ + G P A P + R +P+
Sbjct: 628 PPFST-------MRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ- 677
Query: 506 RIYRYPPGCNIPDVPVAGVPGGMLPGP-YDIGGMPFRDAAFSQPMQTGALASALANASPE 564
Y+Y G P + P + P + G +P+ LAS A P+
Sbjct: 678 --YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG--------QEPLTASMLAS----APPQ 723
Query: 565 QQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRN 624
+Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 724 EQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 783
Query: 625 VAQQQAT 631
++A
Sbjct: 784 HQAKEAA 790
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 267 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 324
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 325 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 384
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 385 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 444
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 445 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 503
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 504 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 553
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 354 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 410
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 411 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 469
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 470 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 528
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 529 PLYVALAQRKEERQA-----HLTNQYMQRMA 554
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 264/603 (43%), Positives = 358/603 (59%), Gaps = 49/603 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG++G S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVDD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK + K YVG+A KK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKDMNGKAIYVGRA-KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 309
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE---MNGKMVVSKPLYVA 395
++ FS FGTITS KVM + G S+G GFV FS + + +N ++A
Sbjct: 310 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSYMQRMASVRVPNPVINPYQPPPSSYFMA 368
Query: 396 LAQRKEERRARL---QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQ 452
+ R A Q +Q+RP PR P Q + G P P P F
Sbjct: 369 AIPPAQNRAAYYPPGQITQLRP--SPRWTAQ-SARPHPFQNM-PGTIRPTAPRPPAFS-- 422
Query: 453 QQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPP 512
MRP VP V Q+ + G P A + R +P+ Y+Y P
Sbjct: 423 -----TMRPASQVPRVVSAQRVANTSTQTMGPRPTAAAAAATNSV--RTVPQ---YKYAP 472
Query: 513 GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM-----QTGALASALANASPEQQR 567
G + P A QP Q AS LA+A P++Q+
Sbjct: 473 GVR---------------NQQHLNAQP--QVAMQQPAVHVQGQEPLTASMLASAPPQEQK 515
Query: 568 TLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 627
+LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ + + A+
Sbjct: 516 QMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVVLQAHQAK 575
Query: 628 QQA 630
+ A
Sbjct: 576 EAA 578
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/595 (42%), Positives = 354/595 (59%), Gaps = 65/595 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRK+ RR SQ+ + R M A G +PP +
Sbjct: 397 AQRKDVRR-----SQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPP---------MF 442
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
G+ P VP P Q P G G M P+ R
Sbjct: 443 YGVMPPRGVPFNGPNPQQMNPMGGMPKNG---------------MPPQFR---------- 477
Query: 517 PDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
+ PV GVP GG P +Q Q ++QR LGE LY
Sbjct: 478 -NGPVYGVPPQ--------GGFPRNANDNNQFYQ-------------QKQRQALGEQLYK 515
Query: 577 LVD--QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
V + A K+TGM+L++ EVL LLES E + EA + ++Q
Sbjct: 516 KVSAKTSNEEAAGKITGMILDLPPQEVLPLLESDELFEQHYKEASAAYESFKKEQ 570
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 235/483 (48%), Positives = 309/483 (63%), Gaps = 28/483 (5%)
Query: 13 AVAAQPSPATN----GIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
A AA PS T +N + S SLY+G+LD V ++ L++LFN +G V S
Sbjct: 38 AAAAAPSEETKDSSESASNKTKSENGNTSTSASLYIGELDPMVTEAMLFELFNSIGPVAS 97
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+RVCRD TRRSLGY YVN++ + +ALDELN+T + G+P RIM+S RDP++RK G G
Sbjct: 98 IRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTG 157
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+FIKNLD +IDNKALHDTFS FG ILSCKVA D LG S+GYGFV FD+ +SA +AI+ +
Sbjct: 158 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHV 217
Query: 189 NGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
NGMLLNDK+V+VG + +++R+S A K F NVYVKNL TTE++ K+F ++G IT
Sbjct: 218 NGMLLNDKKVYVGHHISRRDRQSKFEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKIT 277
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S ++ +D GK + F FVNF D A ++V+ LN ++ K+ YVG+AQKK+ER+ EL+
Sbjct: 278 SLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRK 337
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
++EQ E +K++G+NL+VKNL D I D++LK FS FGTITS KVM D N S+G GF
Sbjct: 338 QYEQMKLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGF 397
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR--------ARLQFSQMRPPVGP 418
V +S EEA+KA+ EMN +M+ KPLYVALAQRKE RR AR QF +
Sbjct: 398 VCYSNPEEATKAIAEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAA 457
Query: 419 RMPMYPPVAPGLGQQLF----------YGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMV 468
V G +F +G PI+P QPG + GM P Y P
Sbjct: 458 AGIPAAAVQYGAAPIVFGPGGYPMPPVNARGMPIVPGQPG---AIPMYSGM-PQYGAPGA 513
Query: 469 QPG 471
PG
Sbjct: 514 YPG 516
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/440 (50%), Positives = 311/440 (70%), Gaps = 21/440 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V+++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 51 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERAL 110
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD +IDNKALHDTF+ FGN+LSCK
Sbjct: 111 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCK 170
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD +G+S+GYGFV ++ E+A+SAI +NGMLLNDK+V+VG + K++R++ D K
Sbjct: 171 VATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKK 230
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F NVYVKN+ +D+ +++F FG +TS + RD +G+S+ FGFVNF+ ++A ++V
Sbjct: 231 QFTNVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAV 290
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ F ++ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D + D+
Sbjct: 291 DTLHDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDE 350
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL++ F FG ITS KVMR G S+G GFV FS+ +EA+KA+ EMN KM+ SKPLYV+L
Sbjct: 351 KLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSL 410
Query: 397 AQRKEERRARL--QFSQ-----MRPPVGPRMP---MYPPV-------APGLGQQLFYGQG 439
AQR+E RR +L Q +Q M+ MP M PP+ P G+ YGQ
Sbjct: 411 AQRREVRRQQLESQIAQRNQIRMQQAAAAGMPAGYMNPPMYYPGPGFPPPAGRGFGYGQ- 469
Query: 440 PPIIPPQPGFGYQQQLVPGM 459
P ++PP+P + QQ VPGM
Sbjct: 470 PGMMPPRPRYAPGQQ-VPGM 488
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/440 (52%), Positives = 301/440 (68%), Gaps = 18/440 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A ++ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 IDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV ++ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ D G+NLYVKNLDD+I D++
Sbjct: 243 LNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG+++ SKPLYVALA
Sbjct: 303 LRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQ 453
QRKEER+A L MR G RM M+ P G G P IPP F +
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQMFQPNTTG-------GFFVPTIPPSQRF-FGP 414
Query: 454 QLVPGMR--PNYFVPMVQPG 471
Q+ MR P + P V+P
Sbjct: 415 QMTTQMRNAPRW-APQVRPA 433
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 57/70 (81%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
+AS LANA+P++Q+ +LGE LYP+++++ A K+TGMLLE++ +E+LH+LE EALKA
Sbjct: 562 IASLLANANPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENSELLHMLEDKEALKA 621
Query: 614 KVAEAMEVLR 623
KV EA+ VL+
Sbjct: 622 KVEEAVAVLQ 631
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/406 (51%), Positives = 292/406 (71%), Gaps = 6/406 (1%)
Query: 6 VQPQAPVAVAAQPSPA-TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
VQP+A ++ P+P + + + A S SLYVG+LD +V ++ ++++FN +G
Sbjct: 13 VQPEAASVPSSAPAPTPSYNLPPQTSISSAP---SASLYVGELDPTVTEAMIFEIFNMIG 69
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
V S+RVCRD TRRSLGY YVNY + RAL++LN++ + G+P RIM+S RDP +RK
Sbjct: 70 PVASIRVCRDAVTRRSLGYAYVNYLNTADGERALEQLNYSLIKGRPCRIMWSQRDPALRK 129
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
+G GNIFIKNLD+ IDNKALHDTF FGN+LSCKVATD G+S+GYGFV ++ E+A++A
Sbjct: 130 TGQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETA 189
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEF 242
I +NGMLLNDK+V+VGP + ++ER+S D K +F N+Y+KNL T+++ +++F +
Sbjct: 190 IKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRY 249
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G +TS V D +G+SK FGFVN++ ++A +V+ L+ K+ YV +AQKK ERE
Sbjct: 250 GSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAEREE 309
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ +EQ+ E K++G+NLYVKNL+D + DDKL+ F FGTITSCKVM D G S+
Sbjct: 310 ELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSSK 369
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G GFV FS+ +EA+KA+ EMN KM+ SKPLYV+LAQR+E RR +L+
Sbjct: 370 GFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQRREVRRQQLE 415
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/566 (45%), Positives = 341/566 (60%), Gaps = 65/566 (11%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 298
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 299 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 358
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP------ 495
+ P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 359 QLRPSPRWTAQ-----GARPHPFQNM--PGAI--RPAAPRPPFSTMRPASSQVPRVMSTQ 409
Query: 496 --------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
M PR P R Y+Y PG P + P + P
Sbjct: 410 RVANTSTQTMGPRPAAAAAAATPAVRTVAQYKYAPGVRNPQQHLNAQPQVTMQQP----- 464
Query: 538 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 597
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D
Sbjct: 465 ------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 518
Query: 598 QTEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 519 NSELLHMLESPESLRSKVDEAVAVLQ 544
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 146
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 147 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 206
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 207 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 265
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 315
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S + S G+G+V++ +
Sbjct: 116 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 172
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 173 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 232
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 233 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 291
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 292 LYVALAQRKEERQA-----HLTNQYMQRMA 316
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/422 (53%), Positives = 290/422 (68%), Gaps = 16/422 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA---HE 93
++SLYVGDL+ V ++QL++LF+ +G V S+RVCRD TRRSLGY YVNYN+A
Sbjct: 18 LTNSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQA 77
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RA++ LN+ LNGKP+RIM+S+RDP+ RKSG GNIFIKNLDKSID KALHDTFS FG
Sbjct: 78 AERAMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFGK 137
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVATD+ G S+GYGFV F+++ +A AI +N + K V+VGPF ++ +R
Sbjct: 138 ILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQGK 197
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
D + NV+VKNL +D+L K+ EFG +TS VM+D G SK FGF+NF D + AA
Sbjct: 198 D--VYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFINFKDAECAA 255
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+ VEALN K+ K Y G+AQKK ERE L+ K E+S +E K++G+NLYVKNL D +
Sbjct: 256 KCVEALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLKYQGMNLYVKNLADEV 315
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DD L++LF+ GTITSCKVM+D +G S+G GFV F++ +EA++A+TEMNGKMV KPLY
Sbjct: 316 DDDALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLY 375
Query: 394 VALAQRKEERRA--------RLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP 445
VALAQRK+ RRA RL M P P M P G G F+ GP +P
Sbjct: 376 VALAQRKDVRRAQLEANVQNRLGMGAMTRPPNPMTGMGP---YGPGAMPFFAAGPGGMPA 432
Query: 446 QP 447
P
Sbjct: 433 GP 434
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/373 (57%), Positives = 279/373 (74%), Gaps = 6/373 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ S SLYVGDL+ +V ++ L+++F +G V S+RVCRD TRRSLGY YVN++ +A R
Sbjct: 7 YQSASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAER 66
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P RIM+S+RDP+IRKSG GNIFIKNLDKSIDNKAL+DTFS FGNILS
Sbjct: 67 ALDTLNYTLIKGRPCRIMWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNILS 126
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKV TD G S+GYGFV ++ E+A SAI K+NG +LN K V+VG F+ ++ER +D
Sbjct: 127 CKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKERTPGSDPE 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+Y+KNL E TE+DLK+ FG FG + S +M+D + F FVNF+D + A R+
Sbjct: 187 KFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRAT 246
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNG+K DKE YVG+AQKK ERE L+ E E A K++G+NLY+KNLDD+++D+
Sbjct: 247 EELNGRKLGDKEVYVGRAQKKSERESFLRKLRE----ERAQKYQGINLYIKNLDDTVNDE 302
Query: 337 KLKELFSE--FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+L +LFS FG ITSCKVM D G SRG GFV ++ E+ASKA++EMNGKMV +KP+YV
Sbjct: 303 ELHKLFSALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYV 362
Query: 395 ALAQRKEERRARL 407
ALA+RK+ R A+L
Sbjct: 363 ALAERKDVRSAKL 375
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 147/283 (51%), Gaps = 17/283 (6%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ +L+ ++ L + F G + S +V D++ + S GY +V F N A+ A+
Sbjct: 9 SASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERAL 68
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D LN L+ + + R+ + K+ N+++KNL ++ L F FG I
Sbjct: 69 DTLNYTLIKGRPCRI----MWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNI 124
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V+ D G SK +GFV+++ + A ++ +NGK + K YVG+ + ER
Sbjct: 125 LSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKER----- 179
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
+ +KF N+Y+KNL ++ +++ LK F FGT+ S +M+DP I R
Sbjct: 180 -----TPGSDPEKF--TNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFA 232
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
FV F E A +A E+NG+ + K +YV AQ+K ER + L+
Sbjct: 233 FVNFEDHEAAHRATEELNGRKLGDKEVYVGRAQKKSERESFLR 275
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 567 RTLLGENLYPLVDQLEHDNAA-KVTGMLLE-MDQTEVLHLLESPEALKAKVAEAMEVLRN 624
+ ++GE LYPLV+ L K+TGMLLE MD TE+LHLL+SP+AL+ KV EA+ VL+
Sbjct: 389 KNIIGETLYPLVEALTSATQGPKITGMLLESMDVTELLHLLQSPDALREKVDEAVGVLK- 447
Query: 625 VAQQQATGPSPTD 637
+ + G +P +
Sbjct: 448 AHEGEENGDAPNE 460
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
A+++ +LY+ +LD +VND +L+ LF+ + GQ+ S +V D S G+G+V Y
Sbjct: 282 AQKYQGINLYIKNLDDTVNDEELHKLFSALPFGQITSCKVMSD-DKGNSRGFGFVCYTNP 340
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYR 118
+A++A+ E+N + KPI + + R
Sbjct: 341 EDASKAVSEMNGKMVANKPIYVALAER 367
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/424 (53%), Positives = 296/424 (69%), Gaps = 9/424 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN ++ ++ LK+ F +G ITS VM DGKSK FGFV ++ + A +V+A
Sbjct: 183 TNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ + G+NLYVKNLDDSI D++
Sbjct: 243 LNGKDMGEGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPV-APGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
QRKEER+A L MR G RM + P F P + P Q FG Q+
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQLFQPNAASGFFV---PTMAPSQRFFG--PQMT 417
Query: 457 PGMR 460
P MR
Sbjct: 418 PQMR 421
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 57/74 (77%)
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
Q +AS LANA P++Q+ +LGE LYP+++++ A K+TGMLLE++ +E+LH+LE E
Sbjct: 563 QEKLIASLLANAKPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENSELLHMLEDQE 622
Query: 610 ALKAKVAEAMEVLR 623
ALKAKV EA+ VL+
Sbjct: 623 ALKAKVEEAVAVLQ 636
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/595 (42%), Positives = 353/595 (59%), Gaps = 65/595 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRK+ RR SQ+ + R M A G +PP +
Sbjct: 397 AQRKDVRR-----SQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPP---------MF 442
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
G+ P VP P Q P G G M P+ R
Sbjct: 443 YGVMPPRGVPFNGPNPQQMNPMGGMPKNG---------------MPPQFR---------- 477
Query: 517 PDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
+ PV GVP GG P +Q Q ++QR LGE LY
Sbjct: 478 -NGPVYGVPPQ--------GGFPRNANNNNQFYQ-------------QKQRQALGEQLYK 515
Query: 577 LVD--QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
V + A K+TGM+L++ EV LLES E + EA + ++Q
Sbjct: 516 KVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQ 570
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/383 (57%), Positives = 281/383 (73%), Gaps = 3/383 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS +G ITS KVM D G S+G GFV F+ A EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRM 420
QRKEER+A L MR G RM
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRM 385
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 56/70 (80%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
+AS LANA P++Q+ +LGE LYP+++ + + A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 557 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKA 616
Query: 614 KVAEAMEVLR 623
KV EA+ VL+
Sbjct: 617 KVEEAVAVLQ 626
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/595 (42%), Positives = 353/595 (59%), Gaps = 65/595 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRK+ RR SQ+ + R M A G +PP +
Sbjct: 397 AQRKDVRR-----SQLAQQIQARNQMRYQQATAARAAAAAGMPGQFMPP---------MF 442
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
G+ P VP P Q P G G M P+ R
Sbjct: 443 YGVMPPRGVPFNGPNPQQMNPMGGMPKNG---------------MPPQFR---------- 477
Query: 517 PDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
+ PV GVP GG P +Q Q ++QR LGE LY
Sbjct: 478 -NGPVYGVPPQ--------GGFPRNANDNNQFYQ-------------QKQRQALGEQLYK 515
Query: 577 LVD--QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
V + A K+TGM+L++ EV LLES E + EA + ++Q
Sbjct: 516 KVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQ 570
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/595 (42%), Positives = 353/595 (59%), Gaps = 65/595 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRK+ RR SQ+ + R M A G +PP +
Sbjct: 397 AQRKDVRR-----SQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPP---------MF 442
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
G+ P VP P Q P G G M P+ R
Sbjct: 443 YGVMPPRGVPFNGPNPQQMNPMGGMPKNG---------------MPPQFR---------- 477
Query: 517 PDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
+ PV GVP GG P +Q Q ++QR LGE LY
Sbjct: 478 -NGPVYGVPPQ--------GGFPRNANDNNQFYQ-------------QKQRQALGEQLYK 515
Query: 577 LVD--QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
V + A K+TGM+L++ EV LLES E + EA + ++Q
Sbjct: 516 KVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQ 570
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/397 (54%), Positives = 285/397 (71%), Gaps = 4/397 (1%)
Query: 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
G G + SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN
Sbjct: 6 TAGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVN 65
Query: 88 YNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
+ +A RALD +NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNKA++DT
Sbjct: 66 FQQPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDT 125
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FGNILSCKVA D S+GYGFV F+ EESA+ AI+K+NGMLL K+V+VG F +
Sbjct: 126 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRT 185
Query: 208 ERESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
R +T RF NVY+KN ++ ++ L+K+F +FG ITS AVM DADGKSK FGFV
Sbjct: 186 ARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVA 245
Query: 266 FDDPDDAARSVEALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
F++P+DA ++V ++ + +++ YV +AQKK ER ELK ++EQ E +++G+N
Sbjct: 246 FENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVN 305
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
LYVKNLDD+++DD LK+ F +G ITS KVM D NG S+G GFV F +EA+KA+TEMN
Sbjct: 306 LYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMN 365
Query: 384 GKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRM 420
GKM+ +KPLYVALAQRKE+R+A+L M+ RM
Sbjct: 366 GKMMCTKPLYVALAQRKEDRKAQLASQYMQRLASIRM 402
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHD-NAAKVTGMLLEMDQTEVLHLLESPEALKA 613
A LA A P++Q+ +LGE +YPL++++ + K+TGM+LEMD +E+L +LE+ E L++
Sbjct: 579 AHMLAQALPQEQKQMLGERIYPLIERIYQGPDVGKITGMMLEMDNSELLMMLENEELLQS 638
Query: 614 KVAEAMEVL 622
KV+EA VL
Sbjct: 639 KVSEAASVL 647
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/440 (52%), Positives = 300/440 (68%), Gaps = 18/440 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 IDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV ++ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ D G+NLYVKNLDD+I D++
Sbjct: 243 LNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG+++ SKPLYVALA
Sbjct: 303 LRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQ 453
QRKEER+A L MR G RM M+ P G G P IPP F +
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQMFQPNTTG-------GFFVPTIPPSQRF-FGP 414
Query: 454 QLVPGMR--PNYFVPMVQPG 471
Q+ MR P + P V+P
Sbjct: 415 QMTTQMRNAPRW-APQVRPA 433
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 57/70 (81%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
+AS LANA+P++Q+ +LGE LYP+++++ A K+TGMLLE++ +E+LH+LE EALKA
Sbjct: 562 IASLLANANPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENSELLHMLEDKEALKA 621
Query: 614 KVAEAMEVLR 623
KV EA+ VL+
Sbjct: 622 KVEEAVAVLQ 631
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 280/370 (75%), Gaps = 2/370 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RALD+
Sbjct: 48 SLYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQ 107
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN++ + + RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCKVA
Sbjct: 108 LNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVA 167
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
TD G S+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + ++ER+S D K ++
Sbjct: 168 TDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEMKAQY 227
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL ++ +++FG+FG ITS A+ +D +GKS+ FGFVNF+ + AA +VE
Sbjct: 228 TNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVET 287
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
L+ + + ++ YV +AQKK ERE EL+ +E + +E K++G+NLY+KNL+D I D+KL
Sbjct: 288 LHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKL 347
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ F FGTITSCKVMRD S+G GFV FS+ +EA+KA++EMN KM+ SKPLYV+LAQ
Sbjct: 348 RAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQ 407
Query: 399 RKEERRARLQ 408
R+E RR +L+
Sbjct: 408 RREVRRQQLE 417
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/397 (54%), Positives = 285/397 (71%), Gaps = 4/397 (1%)
Query: 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
G G + SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN
Sbjct: 6 TAGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVN 65
Query: 88 YNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
+ +A RALD +NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNKA++DT
Sbjct: 66 FQQPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDT 125
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FGNILSCKVA D S+GYGFV F+ EESA+ AI+K+NGMLL K+V+VG F +
Sbjct: 126 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRT 185
Query: 208 ERESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
R +T RF NVY+KN ++ ++ L+K+F +FG ITS AVM DADGKSK FGFV
Sbjct: 186 ARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVA 245
Query: 266 FDDPDDAARSVEALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
F++P+DA ++V ++ + +++ YV +AQKK ER ELK ++EQ E +++G+N
Sbjct: 246 FENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVN 305
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
LYVKNLDD+++DD LK+ F +G ITS KVM D NG S+G GFV F +EA+KA+TEMN
Sbjct: 306 LYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMN 365
Query: 384 GKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRM 420
GKM+ +KPLYVALAQRKE+R+A+L M+ RM
Sbjct: 366 GKMMCTKPLYVALAQRKEDRKAQLASQYMQRLASIRM 402
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHD-NAAKVTGMLLEMDQTEVLHLLESPEALKA 613
A LA A P++Q+ +LGE +YPL++++ + K+TGM+LEMD +E+L +LE+ E L++
Sbjct: 579 AHMLAQALPQEQKQMLGERIYPLIERIYQGPDVGKITGMMLEMDNSELLMMLENEELLQS 638
Query: 614 KVAEAMEVLRNVAQQ 628
KV+EA VL + Q
Sbjct: 639 KVSEAASVLASSKSQ 653
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 281/372 (75%), Gaps = 2/372 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 48 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + +P RIM+S RDP +RK+G GNIFIKNLD++IDNKALHDTF+ FG +LSCK
Sbjct: 108 EQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCK 167
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
VATD G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER+S ++ R
Sbjct: 168 VATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRA 227
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKNL T+D+ ++F ++G +TS + D +GKSK FGFVNF+ D+A ++V
Sbjct: 228 QFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAV 287
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN + K+ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D + DD
Sbjct: 288 DELNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDD 347
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FGTITSCKVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+L
Sbjct: 348 KLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 407
Query: 397 AQRKEERRARLQ 408
AQR+E RR +L+
Sbjct: 408 AQRREVRRQQLE 419
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 280/372 (75%), Gaps = 2/372 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 45 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + +P RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCK
Sbjct: 105 EQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 164
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER+S D K
Sbjct: 165 VATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDEMKA 224
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+Y+KN+ T+++ + +F E G +TS+ + RD +G+S+ FGFVN++ ++A ++V
Sbjct: 225 QFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAV 284
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN K F ++ +V +AQKK ERE EL+ EQ+ E K++GLNLYVKNLDD + D+
Sbjct: 285 DNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDE 344
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FGTITS KVMRD G+S+G GFV +S+ EEASKA+ EMN KM+ SKPLYV+
Sbjct: 345 KLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSH 404
Query: 397 AQRKEERRARLQ 408
AQR+E RR +L+
Sbjct: 405 AQRREVRRQQLE 416
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 282/369 (76%), Gaps = 2/369 (0%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL++L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ + G+ RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCKVAT
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVAT 169
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D G+S+GYGFV ++ E+A +AI +NGMLLNDK+V+VGP + ++ER+S + K +F
Sbjct: 170 DEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFT 229
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKN+ T+++ +++F +FG +TS + RD +G+SK FGFVNF+ ++A + VE+L
Sbjct: 230 NVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESL 289
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ + + K+ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D + D++L+
Sbjct: 290 HDFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLR 349
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ F FGTITS KVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+LAQR
Sbjct: 350 QEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 409
Query: 400 KEERRARLQ 408
+E RR +L+
Sbjct: 410 REVRRQQLE 418
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/540 (46%), Positives = 335/540 (62%), Gaps = 72/540 (13%)
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FG
Sbjct: 109 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 168
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
NILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 169 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 227
Query: 213 --ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
A F NVY+KN E ++ LK +FG+FG S V+ D GKSK FGFV+F+ +
Sbjct: 228 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHE 287
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLD
Sbjct: 288 DARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 347
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +K
Sbjct: 348 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 406
Query: 391 PLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
PLYVALAQRKEER+A L M+ R P + P Y PP
Sbjct: 407 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP-------YQPAPP--------- 450
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRY 510
YF+ + P QN R+ P Q Q P PR +G +
Sbjct: 451 ----------SGYFMAAI-PQTQN------RAAYYPPSQIAQLRP--SPRWTAQGARPQ- 490
Query: 511 PPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLL 570
P V V G Q AS LA+A P++Q+ +L
Sbjct: 491 ------PAVHVQG--------------------------QEPLTASMLASAPPQEQKQML 518
Query: 571 GENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQA 630
GE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ ++A
Sbjct: 519 GERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 578
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 145 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 202
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 203 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 262
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 263 LSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 322
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 323 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 381
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 382 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 431
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S + S G+G+V++ +
Sbjct: 232 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGK-SKGFGFVSFERHED 288
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 289 ARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 347
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 348 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 406
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 407 PLYVALAQRKEERQA-----HLTNQYMQRMA 432
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 238/520 (45%), Positives = 329/520 (63%), Gaps = 67/520 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN++ T++D +++F +FG +TS+++ RD +GK++ FGFVNF + A ++V
Sbjct: 238 NFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + D+
Sbjct: 298 EELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 357
Query: 337 KLKELFSEFGTITSCKVMRD-PN------------------------------------- 358
KL+++F+EFG ITS KVMRD P
Sbjct: 358 KLRQMFAEFGPITSAKVMRDVPQEGEEEAKDQEKDKENQKEGEKEGESAEGAEKKTEKKS 417
Query: 359 ----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS---- 410
G S+G GFV FS ++A+KA+ EMN +M+ +KPLYVALAQRK+ R+++L+ S
Sbjct: 418 DKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQAR 477
Query: 411 -QMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNY 463
Q+R P+ M PPV GQQ P PQ G G +P +P
Sbjct: 478 NQLRMQQAAAAAGMPQQYMQPPVFYAPGQQ-------PGFIPQGGRG-----IPFPQPGM 525
Query: 464 FVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
+P VQ G+ Q PG + G M Q P P P
Sbjct: 526 PMPNVQGGRPGQFPGYPQQGGRNMPQGLPPNMYSIPGQFP 565
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
+LGE ++P + + + A K+TGMLLEMD +E+++L+E ALKAKV EA+ V +
Sbjct: 672 ILGELIFPKIQAINSELAGKITGMLLEMDNSELVNLIEDEAALKAKVDEALAVYDEYVKS 731
Query: 629 QATG 632
QATG
Sbjct: 732 QATG 735
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 252/595 (42%), Positives = 351/595 (58%), Gaps = 65/595 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D+LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 DQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN+++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRK+ RR SQ+ + R M A G +PP +
Sbjct: 397 AQRKDVRR-----SQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPP---------MF 442
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
G+ P VP P Q P G G PP
Sbjct: 443 YGVMPPRGVPFNGPNPQQINPMGGMPKNG------------------------MPP--QF 476
Query: 517 PDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
+ PV GVP GG P +Q Q ++QR LGE LY
Sbjct: 477 GNAPVYGVPPQ--------GGFPRNANDNNQFYQ-------------QKQRQALGEQLYK 515
Query: 577 LVD--QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
V + A K+TGM+L++ EV LLE+ E + EA + ++Q
Sbjct: 516 KVSAKTSNEEAAGKITGMILDLPPQEVFPLLENDELFEQHYKEASAAYESFKKEQ 570
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/406 (54%), Positives = 295/406 (72%), Gaps = 27/406 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCK+A
Sbjct: 72 MNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-TADK-TRF 218
+D G S+GYGFV F+ EE+A+ AI+K+NGMLLN K+V+VG F+ ++ER + DK RF
Sbjct: 132 SDENG-SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDKMKRF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNVY+KN + +D ++++F FG I S VM D GKS+ FGFV++++P+ A ++V+
Sbjct: 191 NNVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDN 250
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNG + K Y G+AQKK ER+ ELK KFE+ E ++++G+NLYVKNLDD + D++
Sbjct: 251 LNGMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERINRYQGVNLYVKNLDDVVDDER 310
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+FGTITS +VM + G S+G GFV FS+ EEA+KA+TEMNG+++VSKPLYVALA
Sbjct: 311 LRKEFSQFGTITSARVMSE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVALA 369
Query: 398 QRKEERRARL-----------------QFSQMRPPVG-----PRMP 421
QRKE+RRA L QF+QM P G P MP
Sbjct: 370 QRKEDRRAHLASQYMQRMTTMRQQQTAQFNQMFQPTGAGYFVPTMP 415
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD V+D +L F+Q G + S RV + RS G+G+V +++ EAT
Sbjct: 291 RYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSEGG--RSKGFGFVCFSSPEEAT 348
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 349 KAVTEMNGRIIVSKPLYVALAQR 371
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/401 (54%), Positives = 285/401 (71%), Gaps = 17/401 (4%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+ VCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 AT-------------RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSID
Sbjct: 65 VMPTSTSSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSID 124
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
NKAL+DTFS FGNILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFV
Sbjct: 125 NKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 183
Query: 201 GPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
G F ++ERE+ A F NVY+KN E ++ LK++F +FG S VMRD GKS
Sbjct: 184 GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS 243
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
K FGFV+++ +DA ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +
Sbjct: 244 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 303
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378
++G+NLY+KNLDD+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA
Sbjct: 304 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKA 362
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPR 419
+TEMNG++V SKPLYVALAQRKEER+A L M+ G R
Sbjct: 363 VTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMR 403
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 586 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 645
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 646 VDEAVAVLQ 654
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/385 (55%), Positives = 280/385 (72%), Gaps = 4/385 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+ +A RALD
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNKA++DTFS FGNILSCKV
Sbjct: 79 TMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 138
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT--R 217
A D S+GYGFV F+ EESA+ AI+K+NGMLL K+V+VG F + R +T R
Sbjct: 139 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMREMGETARR 198
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NV++KN ++ ++ L+K+F +FG ITS AVM DADGKSK FGFV F++P+DA ++V
Sbjct: 199 FTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVN 258
Query: 278 ALNGKKFDDKE--WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
++ + D E YV +AQKK ER ELK ++EQ E +++G+NLYVKNLDD++ D
Sbjct: 259 EMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDD 318
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+ L++ F +G ITS KVM D NG S+G GFV F +EA+KA+TEMNGKM+ +KPLYVA
Sbjct: 319 EVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 378
Query: 396 LAQRKEERRARLQFSQMRPPVGPRM 420
LAQRKE+R+A+L M+ RM
Sbjct: 379 LAQRKEDRKAQLASQYMQRLASIRM 403
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHD-NAAKVTGMLLEMDQTEVLHLLESPEALKA 613
A LA A P++Q+ +LGE +YPL++++ + K+TGM+LEMD +E+L +LE+ E L++
Sbjct: 585 AHMLAQALPQEQKQMLGERIYPLIERIYQGPDVGKITGMMLEMDNSELLMMLENEELLQS 644
Query: 614 KVAEAMEVL 622
KV+EA VL
Sbjct: 645 KVSEAASVL 653
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/569 (45%), Positives = 342/569 (60%), Gaps = 71/569 (12%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 298
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 299 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 358
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 359 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 411
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 412 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 464
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 465 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 515
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 516 EIDNSELLHMLESPESLRSKVDEAVAVLQ 544
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 146
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 147 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 206
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 207 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 265
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 315
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 116 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 172
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 173 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 232
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 233 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 291
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 292 LYVALAQRKEERQA-----HLTNQYMQRMA 316
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 262/615 (42%), Positives = 353/615 (57%), Gaps = 35/615 (5%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVGDL V + L++ F+++G V SVRVCRD +T RSL YGYVNY + +A ALD+L
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N + + KPIR+M+S RDP R+SG GNIF+KNL S+DN +L + FS FG++LSCKVA
Sbjct: 183 NHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVAK 242
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNV 221
+ G SRGYGFVQF ++ESA AI LNG L ND+++ V F++K ER + D +F N+
Sbjct: 243 NEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDD-KFTNL 301
Query: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
Y+K+L + TE+ +K F +FG I S +M+ DG S FGFV+F +P+ A ++ +NG
Sbjct: 302 YMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMNG 361
Query: 282 KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKEL 341
K YV +AQKK ER+ L+ E+ E + N+Y+KN+ D + DD L+
Sbjct: 362 MLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRAR 421
Query: 342 FSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
F EFG ITS KVMRD GISRG GFV +ST EEA A+ M G M KPLYVA+ QRKE
Sbjct: 422 FVEFGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVAIFQRKE 481
Query: 402 ERRARLQ--FSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPII---PPQPGFGYQQQ-L 455
ER+A+LQ F+Q+ VGP M P P Q+++ I PP+ GF Y L
Sbjct: 482 ERKAKLQQHFAQLARMVGPANSMIPTGYP----QVYFAHPSTHIPQGPPRHGFVYPPMGL 537
Query: 456 VPGMRPNYFVPMVQPGQQN-----QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRY 510
RP+ F P Q + P RS G M P+P M Y
Sbjct: 538 SHEWRPSMFPPAPNLQQIHSPVMPNSPRHYRSNRGRMGGNMMPLPHAVHTM-----NYMT 592
Query: 511 PPGCNIPDVPVAGVPGGMLPGP-YDIGGMPFRDAAFSQ--PMQT--GALASALANASPEQ 565
P P +P P Y + A Q P+ T + ++ LA+A P +
Sbjct: 593 HPQ---PAKEFMSLPRQRFNHPKYFSNDVMANSLAIHQSDPVSTMNDSFSNYLASAPPAE 649
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625
Q+ LLG LYPLV++ + + A+K+TGMLLE+D +EV+ LL S E L KV E +++L
Sbjct: 650 QKNLLGNRLYPLVERHQPELASKITGMLLELDNSEVVTLLCSSEMLSVKVDECVQLL--- 706
Query: 626 AQQQATGPSPTDRVA 640
QAT P D A
Sbjct: 707 ---QATKPKAEDHEA 718
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/569 (45%), Positives = 341/569 (59%), Gaps = 71/569 (12%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP YVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQ 298
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 299 RKEERQAHLTNQHMQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 358
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 359 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-------MRPASSQVPRVMSTQRV 411
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 412 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 464
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 465 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 515
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 516 EIDNSELLHMLESPESLRSKVDEAVAVLQ 544
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 146
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 147 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 206
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 207 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 265
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K +YV AQ+K ER+ L + Q +
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQRM 315
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 20/194 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 116 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 172
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 173 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 232
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 233 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 291
Query: 198 VFVGPFLRKQERES 211
+V RK+ER++
Sbjct: 292 FYVALAQRKEERQA 305
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/428 (50%), Positives = 294/428 (68%), Gaps = 15/428 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+++SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVN+ A +
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQ 69
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ L G+PIRIM+S RDP++RKSG GNIFIKNLDKSI+ K L+DTFS FG ILS
Sbjct: 70 ALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ D GQS+GYGFV F+ EE A+ AI+K+N M++ D+ V+VG F+ K ER+S A K
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKV 189
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNN+Y+KN T + LK++F EFG I S VM+D++GKSK FGFV F DPD A +V
Sbjct: 190 KFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-GLNLYVKNLDDSISD 335
+ ++GK+ + + Y +AQ+K ER+ ELK + E+ E + +NLYVKNLDD+I D
Sbjct: 250 KTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDD 309
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+L+E FS G+ITS KVM+D N S+G GFV F+ E+A++A+T+MNG ++ SKPLYVA
Sbjct: 310 KRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 396 LAQRKEERRARL------QFSQMRPPVGPRMPMYPPVA-------PGLGQ-QLFYGQGPP 441
LAQRKE+RRA+L + +Q R PV +P P A P Q Q FY
Sbjct: 370 LAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGA 429
Query: 442 IIPPQPGF 449
++ QP +
Sbjct: 430 VLSSQPRW 437
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ +LY+ + ++ +L ++FN+ G++ S V +D S +S G+G+V +
Sbjct: 186 ARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKD-SEGKSKGFGFVCFLDPDH 244
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPT--------IRKSGAG---------NIFIKNLD 136
A A+ ++ + G+ + + R + K A N+++KNLD
Sbjct: 245 AENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLD 304
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ID+K L + FS G+I S KV D+ +S+G+GFV F N E A A+ +NG ++ K
Sbjct: 305 DNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSK 364
Query: 197 QVFVGPFLRKQERES 211
++V RK++R +
Sbjct: 365 PLYVALAQRKEDRRA 379
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
SALA S E Q+ LGE+LYP + + + A K+TGMLL +D EV++LLES E L+AKV
Sbjct: 622 SALAQLSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKV 681
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/428 (50%), Positives = 294/428 (68%), Gaps = 15/428 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+++SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVN+ A +
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQ 69
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ L G+PIRIM+S RDP++RKSG GNIFIKNLDKSI+ K L+DTFS FG ILS
Sbjct: 70 ALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ D GQS+GYGFV F+ EE A+ AI+K+N M++ D+ V+VG F+ K ER+S A K
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKV 189
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNN+Y+KN T + LK++F EFG I S VM+D++GKSK FGFV F DPD A +V
Sbjct: 190 KFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-GLNLYVKNLDDSISD 335
+ ++GK+ + + Y +AQ+K ER+ ELK + E+ E + +NLYVKNLDD+I D
Sbjct: 250 KTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDD 309
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+L+E FS G+ITS KVM+D N S+G GFV F+ E+A++A+T+MNG ++ SKPLYVA
Sbjct: 310 KRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 396 LAQRKEERRARL------QFSQMRPPVGPRMPMYPPVA-------PGLGQ-QLFYGQGPP 441
LAQRKE+RRA+L + +Q R PV +P P A P Q Q FY
Sbjct: 370 LAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGA 429
Query: 442 IIPPQPGF 449
++ QP +
Sbjct: 430 VLSSQPRW 437
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ +LY+ + ++ +L ++FN+ G++ S V +D S +S G+G+V +
Sbjct: 186 ARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKD-SEGKSKGFGFVCFLDPDH 244
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPT--------IRKSGAG---------NIFIKNLD 136
A A+ ++ + G+ + + R + K A N+++KNLD
Sbjct: 245 AENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLD 304
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ID+K L + FS G+I S KV D+ +S+G+GFV F N E A A+ +NG ++ K
Sbjct: 305 DNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSK 364
Query: 197 QVFVGPFLRKQERES 211
++V RK++R +
Sbjct: 365 PLYVALAQRKEDRRA 379
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
SALA S E Q+ LGE+LYP + + + A K+TGMLL +D EV++LLES E L+AK
Sbjct: 620 SALAQLSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKC 679
Query: 616 AEAMEVLRNVAQQQ 629
E + VLR+ QQ
Sbjct: 680 EEGINVLRSSQNQQ 693
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/428 (50%), Positives = 294/428 (68%), Gaps = 15/428 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+++SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVN+ A +
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQ 69
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ L G+PIRIM+S RDP++RKSG GNIFIKNLDKSI+ K L+DTFS FG ILS
Sbjct: 70 ALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ D GQS+GYGFV F+ EE A+ AI+K+N M++ D+ V+VG F+ K ER+S A K
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKV 189
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNN+Y+KN T + LK++F EFG I S VM+D++GKSK FGFV F DPD A +V
Sbjct: 190 KFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-GLNLYVKNLDDSISD 335
+ ++GK+ + + Y +AQ+K ER+ ELK + E+ E + +NLYVKNLDD+I D
Sbjct: 250 KTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDD 309
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+L+E FS G+ITS KVM+D N S+G GFV F+ E+A++A+T+MNG ++ SKPLYVA
Sbjct: 310 KRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 396 LAQRKEERRARL------QFSQMRPPVGPRMPMYPPVA-------PGLGQ-QLFYGQGPP 441
LAQRKE+RRA+L + +Q R PV +P P A P Q Q FY
Sbjct: 370 LAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGA 429
Query: 442 IIPPQPGF 449
++ QP +
Sbjct: 430 VLSSQPRW 437
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ +LY+ + ++ +L ++FN+ G++ S V +D S +S G+G+V +
Sbjct: 186 ARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKD-SEGKSKGFGFVCFLDPDH 244
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPT--------IRKSGAG---------NIFIKNLD 136
A A+ ++ + G+ + + R + K A N+++KNLD
Sbjct: 245 AENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLD 304
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ID+K L + FS G+I S KV D+ +S+G+GFV F N E A A+ +NG ++ K
Sbjct: 305 DNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSK 364
Query: 197 QVFVGPFLRKQERES 211
++V RK++R +
Sbjct: 365 PLYVALAQRKEDRRA 379
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
SALA S E Q+ LGE+LYP + + + A K+TGMLL +D EV++LLES E L+AK
Sbjct: 622 SALAQLSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKC 681
Query: 616 AEAMEVLRNVAQQQ 629
E + VLR+ QQ
Sbjct: 682 EEGINVLRSSQNQQ 695
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/443 (51%), Positives = 294/443 (66%), Gaps = 32/443 (7%)
Query: 28 NGGV-GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
NGG+ A FVS SLYVGDL V ++ L+++FN +G V S+RVCRD TRRSLGY YV
Sbjct: 70 NGGMNAGAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYV 129
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
NY +A R+LD LN+T + G+P RIM+ +RDP++RKSG GNIF+KNLDK+IDNKAL+D
Sbjct: 130 NYQGIQDAERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYD 189
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
TFS FGNILSCKVA D G S+GYGFV ++NEESA+SAIDK+NGML+ K V+VGPF+R+
Sbjct: 190 TFSLFGNILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRR 249
Query: 207 QERESTADKTRFNNVYVKNL-SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
ER++ A+ ++ NVY+KN+ S E L++ F +FG ITS V +D G + F F N
Sbjct: 250 AERDNLAE-AKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLVVRKDPKG--RLFAFCN 306
Query: 266 FDDPDDAARSVEALNGKKFDD----KE---------------------WYVGKAQKKYER 300
F D D A +VEALNGK+ D KE +VG Q K R
Sbjct: 307 FADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKEEEGQKREGDQILFVGPHQSKAHR 366
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
L+ KFEQ ++ D+F+G+NLY+KN+DDSI D+KL++LF FG+ITS KVMRD G+
Sbjct: 367 SAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGV 426
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRM 420
SR GFV F + EEA+KA+TEM+ K+V KPLYV LA+R+E+R RLQ P + P
Sbjct: 427 SRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRFRLPSLRPAA 486
Query: 421 PMYP--PVAPGLGQQLFYGQGPP 441
P A QL YG G P
Sbjct: 487 AALPGNVAAAAAAAQLQYGGGAP 509
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
P Q+ +LGE L+PL+ + + + A K+TGM+LEMD E+L LLES LKAKV EA+ VL
Sbjct: 705 PSMQKQMLGEKLFPLIARYQPELAGKITGMMLEMDNAELLILLESEAQLKAKVDEALRVL 764
Query: 623 RNVA 626
+ +
Sbjct: 765 QQAS 768
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/573 (44%), Positives = 347/573 (60%), Gaps = 69/573 (12%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 71 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 130
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 131 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 189
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 190 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHED 249
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY+KNLDD
Sbjct: 250 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 309
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 310 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 368
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 369 LYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGG-----YFMPAVPQAQ 423
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPG--------------QQNQRPGGRR---SGTGPM 487
+P + Y + MRPN P Q G Q RP R +GT P+
Sbjct: 424 SRPTY-YAPNQMAQMRPN---PRWQQGGRPQGFQGMPSALRQSGPRPALRHLAPAGTAPV 479
Query: 488 QQAQQPIPLMQPRMLPRGR-----------------IYRYPPGCNIPDVPVAGVPGGMLP 530
+ P+ + + G+ Y+Y P PV + P
Sbjct: 480 SRG-LPVSAQRAGVTTAGQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPPVQPLQAPQ-P 537
Query: 531 GPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVT 590
+ G P AS LA A P++Q+ +LGE L+PL+ + A K+T
Sbjct: 538 AVHVQGQEPL-------------TASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKIT 584
Query: 591 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
GMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 585 GMLLEIDNSELLHMLESPESLRSKVEEAVAVLQ 617
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 166/291 (57%), Gaps = 23/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 106 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 163
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + FS +G
Sbjct: 164 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKT 223
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 224 LSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAEL- 282
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK F
Sbjct: 283 KRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGF 341
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 342 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 392
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF++ G+ +SV+V D T +S G+G+V++ +
Sbjct: 193 AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHED 249
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N +NGK + R + I + N++IKNLD
Sbjct: 250 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 309
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 310 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 368
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 369 LYVALAQRKEER-----KAHLTNQYMQRIA 393
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/437 (52%), Positives = 296/437 (67%), Gaps = 20/437 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD+ IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A ++I+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 LDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ + G+NLYVKNLDDSI D++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
QRKEER+A L MR G RM QQL G P G Y + P
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRM-----------QQL----GQIFQPNTTGGFYVPTMAP 407
Query: 458 GMRPNYFVPMVQPGQQN 474
G R +F P + +N
Sbjct: 408 GQR--FFSPQIATQMRN 422
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 18/189 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV + +D +L D F G++ S +V +S G+G+V + A A+
Sbjct: 183 TNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSK-EDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 100 ELNFTPL-NGKPIRIMYSYRDP-----------TIRKSGAG-----NIFIKNLDKSIDNK 142
LN + GK + + + + ++K N+++KNLD SID++
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDE 301
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS +G I S KV TD G+S+G+GFV F + A A+ +LNG ++ K ++V
Sbjct: 302 RLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVAL 361
Query: 203 FLRKQERES 211
RK+ER++
Sbjct: 362 AQRKEERKA 370
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 56/70 (80%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
+AS LANA P++Q+ +LGE LYPL++++ A K+TGMLLE++ +E+LH+LE EALKA
Sbjct: 560 IASLLANAKPQEQKQILGERLYPLIERMHATLAGKITGMLLEIENSELLHMLEDQEALKA 619
Query: 614 KVAEAMEVLR 623
KV EA+ VL+
Sbjct: 620 KVEEAVAVLQ 629
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/427 (54%), Positives = 298/427 (69%), Gaps = 15/427 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-TADKTR-F 218
TD G S+GYGFV F+ EE+A +AI+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREKDLGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN + ++ LK++F +G ITS VM DGKSKCFGFV F+ + A +VEA
Sbjct: 183 TNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK D K YV +AQKK ER+ ELK KFE+ K+ + G+NLYVKNLDD+I D++
Sbjct: 243 LNGKDMGDGKALYVARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM D +G S+G GFV F EA+ A+TEMNG++V SKPLYVALA
Sbjct: 303 LRKEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPPVAPGL--------GQQLFYGQGPPIIPP 445
QRKE+R+A L MR G RM M+ P PG GQ+ F Q P +
Sbjct: 363 QRKEDRKAHLASQYMRHMAGMRMQQIGQMFQPNTPGNFFVPTMGPGQRFFGPQVPTAMRN 422
Query: 446 QPGFGYQ 452
P + Q
Sbjct: 423 TPRWAAQ 429
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 55/70 (78%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
LAS LANA+P++Q+ +LGE LYP+++ + A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 575 LASMLANANPQEQKQILGERLYPIIELAHPNMAGKITGMLLEIENSELLHMIEDQEALKA 634
Query: 614 KVAEAMEVLR 623
KV EA+ VL
Sbjct: 635 KVEEAVAVLH 644
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV + V+D +L ++F+ G++ S +V +S +G+V + A A++
Sbjct: 183 TNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIK-EDGKSKCFGFVAFETTEAAEAAVE 241
Query: 100 ELNFTPL-NGKPIRIMYSYRDP---------------TIRKSGAG-NIFIKNLDKSIDNK 142
LN + +GK + + + + ++S G N+++KNLD +ID++
Sbjct: 242 ALNGKDMGDGKALYVARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKNLDDTIDDE 301
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS FG I S KV TD G+S+G+GFV F A A+ ++NG ++ K ++V
Sbjct: 302 RLRKEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVAL 361
Query: 203 FLRKQERES 211
RK++R++
Sbjct: 362 AQRKEDRKA 370
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 292/773 (37%), Positives = 405/773 (52%), Gaps = 163/773 (21%)
Query: 3 QVQVQPQAP---VAVAAQPS----PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQ 55
QV+ +AP A A PS P T G + Q S SLYVG+LD SV ++
Sbjct: 14 QVEAPTEAPANGTAAGAAPSTEAAPETAGEPSGTAAPATSQPHSASLYVGELDPSVTEAM 73
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T + G+P RIM+
Sbjct: 74 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 133
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV +
Sbjct: 134 SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHY 193
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTED 233
+ E+A +AI +NGMLLN+K+VFVG + K++R+S + K F N+YVKN+ + T++
Sbjct: 194 ETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE 253
Query: 234 DLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
+ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +VEALN + ++ YVG
Sbjct: 254 EFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVG 313
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D+KL+ELFS +G ITS K
Sbjct: 314 RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAK 373
Query: 353 VMRD-----PNGISRGSGF----------------VAFSTAEEASKALTEMNGKMVVSKP 391
VMR+ P +G + S +E+ SK+ + GK +KP
Sbjct: 374 VMREAIVDVPAETEKGKEADKEKAKEAGDKSEEKGESKSESEDKSKSEEKSEGKTESAKP 433
Query: 392 --------------------------------------LYVALAQRKEERRARLQFS--- 410
LYVALAQRK+ R+++L+ S
Sbjct: 434 EKRHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQA 493
Query: 411 -------QMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF--GYQQQLVPGMRP 461
Q+ G P P +FYG P Q GF G Q+ GM+
Sbjct: 494 RNTIRQQQVAAAAGMAQPFMQPA-------VFYG-----APGQQGFLPGAQR----GMQF 537
Query: 462 NYFVPMVQPGQQNQRPG------GRRSGTGPMQQAQQPIP---LMQPRMLPRGRIYR--Y 510
MV PG RPG G++ G G QP+P M + +P G +
Sbjct: 538 AGQAGMVMPGMPGGRPGQFPQFPGQQGGRG--MNPNQPLPPNFAMGSQGIPMGAMQSAGI 595
Query: 511 PPGCNIPDV---------------------PVAGVPGGMLPGPYDIG-----GMPF---- 540
P G N + P AG M GP G MP
Sbjct: 596 PNGLNYSQISQVQSFGRGGGRGQGPMQGMPPAAGNAPQMRGGPGAPGFAQGRNMPIQQGG 655
Query: 541 ------------------RDAAFSQPMQTGALASALANASPE-QQRTLLGENLYPLVDQL 581
RD A +G++ A+ NA+PE QQ+ +LGE +YP +
Sbjct: 656 RAGPGGRGQGAPGQGGIPRDEAAG----SGSINLAVFNAAPEPQQKQMLGEAIYPKILAQ 711
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPS 634
+ + A K+TGMLLEMD +E++ L++ AL+AKV EA+ V + + P+
Sbjct: 712 QPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEALTVYDEYVKNKNDAPT 764
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/659 (39%), Positives = 366/659 (55%), Gaps = 59/659 (8%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
V + +APVAV + PA G N +LYVGDL SV + L ++F ++
Sbjct: 11 VAMAAEAPVAVEVEAVPAVAGGLNA---------TVPALYVGDLHESVREEHLLEVFGKI 61
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
G + SVRVCRD +T SL YGYVNY + +A AL++LN + + KPIR+M+S RDP R
Sbjct: 62 GTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDAR 121
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
+SG GN+F+KNL+ +DN +L + F FG+ILSCKVA + G SRGYGFVQF +ESA +
Sbjct: 122 RSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADA 181
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+I LN +Q+ V F++K ER ST + ++ N+Y+KNL + TE+ +K F ++G
Sbjct: 182 SIQNLNNSHFCGRQLHVATFIKKSER-STNNDDKYTNLYMKNLDDDITEELIKLKFSQYG 240
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
++ S +M+ DG SK FGFV+F +P+ A R+ E++NG K YV +AQKK ER+
Sbjct: 241 LVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQY 300
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
L+ E+ E K G N+Y+KN++D + DD L+E F+EFG ITS K+MRD GIS+G
Sbjct: 301 LQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKG 360
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPPVGPRMP 421
GFV ++T EEA A++ M G M KPLYVA+AQRKEERRA+L+ F+++ VG P
Sbjct: 361 FGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMVGATSP 420
Query: 422 MYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVP---MVQPGQQNQRPG 478
+ P P Q ++ +P PG R + P + Q + N P
Sbjct: 421 VIPTGYP----QFYFAHPSTHLPQSPG-----------RQGFMYPPIGISQEWRHNMFPS 465
Query: 479 GRRSGTGPMQQAQQPIPLMQPRML--PRGR----IYRYPPGCN-IPDVPVAGVPGGM--- 528
+QQ PI PR RGR + + N +P A M
Sbjct: 466 SHN-----IQQIHSPIMRNTPRQYRNNRGRMNGNMMHFHHTVNYVPHAQPAKEFMSMSRQ 520
Query: 529 -------LPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQL 581
+P G+ M A + LA A PE+Q+ +LG LYPLV++
Sbjct: 521 RFSHAKYIPNDIMANGLAIHHGDSISSM-NDAFNNLLATAPPEEQKNMLGNRLYPLVERH 579
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVA 640
D A+K+TGMLLE+ +EV+ LL S L AK+ E +++L+ V P P D+ A
Sbjct: 580 HPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQEVK------PKPEDQEA 632
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/538 (44%), Positives = 329/538 (61%), Gaps = 87/538 (16%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 124 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 183
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +N MLLN+K+V+VG + K++R+S + K
Sbjct: 184 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKA 243
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+S T+++ + +F ++G +TS+++ RD++GKS+ FGFVNF + AA++V
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D I DD
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++FSE+G ITS KVMRD
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 359 -------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER-------- 403
G S+G GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASI 483
Query: 404 --RARLQFSQMRPPVG-PRMPMYPPVAPGLGQQLFY----GQGPPIIPPQPGFGYQQQLV 456
R +L+ Q G P+ M PV GQQ + G+G P PQ G G V
Sbjct: 484 QARNQLRMQQAAAQAGLPQQYMQTPVYYAPGQQPNFMPPGGRGMPF--PQGGLG--MPAV 539
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 514
G RP F P Q G + GG M P+ LP + ++PPG
Sbjct: 540 QGGRPGQFPPYAQQGGR----GG-----------------MPPQQLPIYPLGQFPPGA 576
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 559 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
A +P+QQ+ +LGENL+P + L+ D A K+TGMLLEMD E+++LLE AL AKV EA
Sbjct: 685 ATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAKVNEA 744
Query: 619 MEVLRNVAQQQ---ATGPSPT 636
M V + Q GP+PT
Sbjct: 745 MAVYDEYVKSQQGPGQGPAPT 765
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/515 (46%), Positives = 319/515 (61%), Gaps = 62/515 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A FVS SLYVGDL V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY +
Sbjct: 78 AANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQD 137
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A R+LD LN+T + G+P RIM+ +RDP++RKSG GNIF+KNLDK+IDNKAL+DTFS FGN
Sbjct: 138 AERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGN 197
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++NEESA+SAIDK+NGML+ K V+VGPF+R+ ER++ A
Sbjct: 198 ILSCKVAVDENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERDNLA 257
Query: 214 DKTRFNNVYVKNL-SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+ T++ NVY+KN+ S E L++ F ++G ITS V +D G + F F NF D D A
Sbjct: 258 E-TKYTNVYIKNMPSAWEDEARLRETFAKYGSITSLVVRKDPKG--RLFAFCNFADHDSA 314
Query: 273 ARSVEALNGKKFDD----KE---------------------WYVGKAQKKYEREMELKGK 307
+VEALNGK+ D KE +VG Q K R L+ K
Sbjct: 315 KAAVEALNGKRVTDAGAIKEGEDSGAEEKDEEGQKREGEQILFVGPHQSKAHRSAMLRAK 374
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
FEQ ++ D+F+G+NLY+KN+DDSI D+KL++LF FG+ITS KVMRD G+SR GFV
Sbjct: 375 FEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFV 434
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPM----- 422
F + EEA+KA+TEM+ K+V KPLYV LA+R+E+R RLQ P + P +
Sbjct: 435 CFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRFRLPSLRPAAALPGNVA 494
Query: 423 ---------YPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQ 473
Y AP L Q F G G + P+P G+ P+ + P +Q
Sbjct: 495 AAAAAAQLQYGGAAPQL--QGFAGPG-AMYAPRPLMGFSPH------PHQVTAAMLPWRQ 545
Query: 474 NQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIY 508
Q G Q A Q +P M+P++ P +Y
Sbjct: 546 QQAGG---------QFASQGVP-MRPQLGPLQHLY 570
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
P Q+ +LGE L+PL+ + + + A K+TGM+LEMD E+L LLES LKAKV EA+ VL
Sbjct: 700 PSMQKQMLGEKLFPLIARYQPELAGKITGMMLEMDNAELLILLESEAQLKAKVDEALRVL 759
Query: 623 RNVA 626
+ +
Sbjct: 760 QQAS 763
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/461 (49%), Positives = 315/461 (68%), Gaps = 22/461 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+LD SV+++ LYD+F+ +G V S+RVCRD T SLGY YVN++ +A+++
Sbjct: 39 SLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQ 98
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN+T + GKP RIM+S RDP++RK G+GNI+IKNL +IDNK+LH+TFSTFGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
TD G SRG+GFV F+NE A+ AI+ +NGML+ND++V+V + K++R+S + K +F
Sbjct: 159 TDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKF 218
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKN+ T++++ +++F ++G ITS + +D++GK + FGF+NF+D AAR+V+
Sbjct: 219 TNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDE 278
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN F + YVG+AQKK+ER+ ELK ++E + E K++G+NL++KNLDDSI D+KL
Sbjct: 279 LNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKL 338
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
K+ F+ FGTITS KVM+D G SRG GFV FST EEA+KA+TE N ++V KPLYVA+AQ
Sbjct: 339 KDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQ 398
Query: 399 RKEERRARL-----QFSQMRPPVGPRMPMYPPVAPGLGQQ-----LFYGQGPPIIPPQPG 448
RKE RR +L +QMR GL Q ++YG PP +P Q
Sbjct: 399 RKEVRRNQLAQQIQARNQMR--FQHANAAAAAAVAGLPGQFIPPPMYYGGIPPRVPFQ-- 454
Query: 449 FGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQ 489
G Q+ GM N +P Q G RPG G GP Q
Sbjct: 455 -GPNPQMT-GMPKNGAIPPQQFG----RPGPMYGGFGPQGQ 489
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++DL + + LF++ G++ S + +D S + G+G++N+ A RA+D
Sbjct: 219 TNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKD-SEGKLRGFGFINFEDHSTAARAVD 277
Query: 100 ELNFTPLNGKPIRI----------------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN + G+ + + + R + K N+FIKNLD SID++
Sbjct: 278 ELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEK 337
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L D F+ FG I S KV D G SRG+GFV F E A AI + N L+ K ++V
Sbjct: 338 LKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIA 397
Query: 204 LRKQER 209
RK+ R
Sbjct: 398 QRKEVR 403
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 17/202 (8%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNF 266
E E+ +T ++YV L + +E L IF G ++S V RDA S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
D + +++E LN K + +Q+ + SL++ N+Y+
Sbjct: 87 HDHEAGRKAIEQLNYTLIKGKPCRIMWSQR------------DPSLRKKGSG----NIYI 130
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNL +I + L E FS FG I SCKV D NG+SRG GFV F +A A+ +NG +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGML 190
Query: 387 VVSKPLYVALAQRKEERRARLQ 408
+ + +YVA K++R+++L+
Sbjct: 191 MNDQEVYVAWHVSKKDRQSKLE 212
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 281/731 (38%), Positives = 390/731 (53%), Gaps = 157/731 (21%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 117 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 177 VAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ + T+++ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +
Sbjct: 237 NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAA 296
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN + ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 297 VEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 336 DKLKELFSEFGTITSCKVMRDP----------------------NGISRGSGFVAFSTAE 373
+KL+ELFS +G ITS KVMR+ G A S +E
Sbjct: 357 EKLRELFSSYGNITSAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKSESE 416
Query: 374 EASKALTEMNGKMVVSKP--------------------------------------LYVA 395
+ SK+ + GK +KP LYVA
Sbjct: 417 DKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVA 476
Query: 396 LAQRKEERRARLQFS----------QMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP 445
LAQRK+ R+++L+ S Q+ G P P +FYG P
Sbjct: 477 LAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMAQPFMQPA-------VFYG-----APG 524
Query: 446 QPGF--GYQQQLVPGMRPNYFVPMVQPGQQNQRPG------GRRSGTGPMQQAQQPIP-- 495
Q GF G Q+ GM+ MV PG + RPG G++ G G QP+P
Sbjct: 525 QQGFLPGAQR----GMQFAGQAGMVMPGMPSGRPGQFPQFPGQQGGRG--MNPNQPLPPN 578
Query: 496 -LMQPRMLPRGRIY--RYPPGCNIPDV---------------------PVAGVPGGMLPG 531
M + +P G + P G N P + P AG M G
Sbjct: 579 FAMGNQAIPMGAMQGAGIPNGLNYPQIGQVQSFGRGGGRGQGPMQGMPPAAGNAPQMRGG 638
Query: 532 PYDIG-----GMPF----------------------RDAAFSQPMQTGALASALANASPE 564
P G MP RD A +G++ A+ NA+PE
Sbjct: 639 PGAPGFAQGRNMPIQQGGRAGPGGRGQGAPGQGGIPRDEAAG----SGSINLAVFNAAPE 694
Query: 565 -QQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
QQ+ +LGE +YP + + + A K+TGMLLEMD +E++ L++ AL+AKV EA+ V
Sbjct: 695 PQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEALTVYD 754
Query: 624 NVAQQQATGPS 634
+ + P+
Sbjct: 755 EYVKNKNDAPA 765
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 153/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 226 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNE 275
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+
Sbjct: 276 TGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELR 326
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 251/578 (43%), Positives = 347/578 (60%), Gaps = 65/578 (11%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRK+ RR SQ+ + R M A G +PP +
Sbjct: 397 AQRKDVRR-----SQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPP---------MF 442
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
G+ P VP P Q P G G M P+ R
Sbjct: 443 YGVMPPRGVPFNGPNPQQMNPMGGMPKNG---------------MPPQFR---------- 477
Query: 517 PDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
+ PV GVP GG P +Q Q ++QR LGE LY
Sbjct: 478 -NGPVYGVPPQ--------GGFPRNANDNNQFYQ-------------QKQRQALGEQLYK 515
Query: 577 LVD--QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
V + A K+TGM+L++ EV LLES E +
Sbjct: 516 KVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFE 553
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/582 (42%), Positives = 339/582 (58%), Gaps = 108/582 (18%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 62 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKA 121
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 122 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 181
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 182 KVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 241
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F N+Y+KN+S T+D+ + +F FG +TS+++ RD +GKS+ FGFVNF + AA++
Sbjct: 242 ANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKA 301
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + D
Sbjct: 302 VDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKANKYQGVNLYIKNLDDDVDD 361
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGS------------------------------- 364
+KL++LF++FG ITS KVMRD N G+
Sbjct: 362 EKLRQLFADFGPITSAKVMRD-NATDSGNEDEGSSEEKETEAKKDEEEEEKPEEAKTDDK 420
Query: 365 --------------------GF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
GF V FS ++A+KA+ EMN +MV KPLYVALAQRK+
Sbjct: 421 EDADKKSDKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQRKDV 480
Query: 403 RRARLQFS-----QMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIP-PQPGFG 450
R+++L+ S Q+R P+ M PPV GQQ + QG + PQPG
Sbjct: 481 RKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAAGQQPVFPQGGRGMAFPQPGMA 540
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRY 510
+P VQ G+ Q PGG P Q + +P P
Sbjct: 541 --------------MPAVQGGRPGQFPGGY-----PQQGGRGGLPQQMP----------- 570
Query: 511 PPGCNIPDVPVAGVPGGMLPG-PYDIGGMPFRDAAFSQPMQT 551
PV G+PG PG PY G P AA Q Q
Sbjct: 571 ---------PVYGIPGQFPPGAPYPQPGNPQFLAAIQQVXQA 603
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/370 (58%), Positives = 279/370 (75%), Gaps = 7/370 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK +FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 246
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++
Sbjct: 247 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 306
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 307 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 365
Query: 398 QRKEERRARL 407
QRKEER+A L
Sbjct: 366 QRKEERQAHL 375
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/366 (57%), Positives = 275/366 (75%), Gaps = 4/366 (1%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD +NF + GKPIRIM+
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GY FV F
Sbjct: 62 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHF 120
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTED 233
+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++
Sbjct: 121 ETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 180
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
LK++F +FG S VMRD GKSK FGFV+++ +DA ++VE +NGK+ K +VG+
Sbjct: 181 SLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 240
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL++ FS FG+ITS KV
Sbjct: 241 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 300
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR 413
M + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQRKEER+A L M+
Sbjct: 301 MLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 359
Query: 414 PPVGPR 419
G R
Sbjct: 360 RVAGMR 365
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A +A+++
Sbjct: 75 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEK 132
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D+++L + FS FG
Sbjct: 133 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 192
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G+S+G+GFV ++ E A A++++NG ++ K +FVG +K ER++
Sbjct: 193 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 252
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 253 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 311
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 312 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 361
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S +S G+G+V+Y +
Sbjct: 162 AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSG-KSKGFGFVSYEKHED 218
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 219 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 278
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 279 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 337
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 338 LYVALAQRKEER-----KAHLTNQYMQRVA 362
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 547 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 606
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 607 VDEAVAVLQ 615
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 276/647 (42%), Positives = 378/647 (58%), Gaps = 108/647 (16%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY++FN +G V S+RVCRD TRRSLGY YVN++ +A RALD
Sbjct: 35 SLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDT 94
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN++P+ GK RIM+S+RDPT+RK+G N+F+KNLDK+IDNKAL+DTFS FGNILSCKVA
Sbjct: 95 LNYSPIRGKQCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFGNILSCKVA 154
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR-F 218
TD G+SRGYGFV F+N+ESA AI KLNGM++ +K V+VGPF + ER E D+ R F
Sbjct: 155 TDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGPFQKHAERAEQHGDEPRKF 214
Query: 219 NNVYVKNLSET-TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
NVY+K+L E+ TTE+D++K F EFG ITS A+ D G+ F FVN++D D AA++VE
Sbjct: 215 TNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQTDRKGRR--FAFVNYEDFDSAAKAVE 272
Query: 278 ALNGKKFDDKE-----------------------WYVGKAQKKYEREMELKGKFEQSLKE 314
A+NGK +E YV +AQ K ER EL+ KF+ E
Sbjct: 273 AMNGKDMRTQEEIDAGKGEEESTEEGSDEMPEYKLYVTRAQTKTERSAELRNKFQAKNTE 332
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAE 373
+ NLYVKNL + + D+KL+++F +FG ITS KVM D N G+SRG GFV F+
Sbjct: 333 KVGN-QSCNLYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQA 391
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQ 433
+ KA+ M+ K+ KPL+VA+A E+R AR++ Q R G +PM G QQ
Sbjct: 392 DGEKAIQAMHLKLYGGKPLFVAVA---EKRDARIERLQQRYRAG--IPM------GGFQQ 440
Query: 434 LFYGQGPP--IIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRP-------------- 477
+ G P P P PM G QN++
Sbjct: 441 NYQGYRGPRNFNAPNPS-----------------PMYYSGGQNRQGGMMQGPPGGFVGGP 483
Query: 478 ----GGRR----SGTGPMQQAQQP-----IPLMQPRMLPRGRIYRYPPGCNIPDV---PV 521
G +R SG P+ + +P +P+ QP PRG +PP P P
Sbjct: 484 RGPMGAQRGPMMSGGYPVNRGPRPTGPNMMPMNQP---PRG---NFPPQQRFPGQQGGPF 537
Query: 522 AGVPGG----MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPL 577
G GG M+P +++ MP ++ PM A+ALA+A P Q+ +LGE L+ L
Sbjct: 538 MGQQGGMPPRMMPEQHNM-PMPHQNPP---PM----TAAALASAPPGLQKQMLGERLFTL 589
Query: 578 VDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRN 624
+ + + A K+TGM+LEMD +E+L L++S + L+ K+ EA+ VL++
Sbjct: 590 ISKYQPTLAGKITGMMLEMDNSELLMLIDSDQQLRMKIDEAVRVLQH 636
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/659 (39%), Positives = 366/659 (55%), Gaps = 59/659 (8%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
V + +APVAV + PA G N +LYVGDL SV + L ++F ++
Sbjct: 11 VAMAAEAPVAVEVEAVPAAAGGLNA---------TVPALYVGDLHESVREEHLLEVFGKI 61
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
G + SVRVCRD +T SL YGYVNY + +A AL++LN + + KPIR+M+S RDP R
Sbjct: 62 GTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDAR 121
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
+SG GN+F+KNL+ +DN +L + F FG+ILSCKVA + G SRGYGFVQF +ESA +
Sbjct: 122 RSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADA 181
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+I LN +Q+ V F++K ER ST + ++ N+Y+KNL + TE+ +K F ++G
Sbjct: 182 SIQNLNNSHFCGRQLHVATFIKKSER-STNNDDKYTNLYMKNLDDDITEELIKLKFSQYG 240
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
++ S +M+ DG SK FGFV+F +P+ A R+ E++NG K YV +AQKK ER+
Sbjct: 241 LVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQY 300
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
L+ E+ E K G N+Y+KN++D + DD L+E F+EFG ITS K+MRD GIS+G
Sbjct: 301 LQCLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKG 360
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPPVGPRMP 421
GFV ++T EEA A++ M G M KPLYVA+AQRKEERRA+L+ F+++ VG P
Sbjct: 361 FGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMVGATSP 420
Query: 422 MYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVP---MVQPGQQNQRPG 478
+ P P Q ++ +P PG R + P + Q + N P
Sbjct: 421 VIPTGYP----QFYFAHPSTHLPQSPG-----------RQGFMYPPIGISQEWRHNMFPS 465
Query: 479 GRRSGTGPMQQAQQPIPLMQPRML--PRGR----IYRYPPGCN-IPDVPVAGVPGGM--- 528
+QQ PI PR RGR + + N +P A M
Sbjct: 466 SHN-----IQQIHSPIMRNTPRQYRNNRGRMNGNMMHFHHTVNYVPHAQPAKEFMSMSRQ 520
Query: 529 -------LPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQL 581
+P G+ S A + LA A PE+Q+ +LG LYPLV++
Sbjct: 521 RFSHAKYIPNDVMANGLAIHHGD-SISSLNDAFNNLLATAPPEEQKNMLGNRLYPLVERH 579
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVA 640
D A+K+TGMLLE+ +EV+ LL S L AK+ E +++L+ V P P D+ A
Sbjct: 580 HPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQEVK------PKPEDQEA 632
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 261/594 (43%), Positives = 351/594 (59%), Gaps = 102/594 (17%)
Query: 10 APVAVAAQPS--PATNG------IANNGGVGDARQFV--------STSLYVGDLDLSVND 53
+P AA PS PATNG + G +G+ S SLYVG+LD SV +
Sbjct: 9 SPAGQAAAPSDAPATNGNQINTAVPAGGDIGETPTSAAPTNANPNSASLYVGELDPSVTE 68
Query: 54 SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
+ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN+A + RAL+ELN+T + GKP RI
Sbjct: 69 AMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEELNYTLIKGKPCRI 128
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAVDEHGNSKGYGFV 188
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTT 231
++ ++A AI +NGMLLN+K+VFVG + K++R S + K F N+YVKN+ TT
Sbjct: 189 HYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETT 248
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+D+ +++F ++G ITS ++ D GK + FGFVNF +DAA++V+ LN F ++ YV
Sbjct: 249 DDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYV 308
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQKK+ERE EL+ ++E +E + K++G+NLYVKNL D I D++L+++F +G ITS
Sbjct: 309 GRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELRKIFEPYGAITSA 368
Query: 352 KVMRDPN----------------------------------------------------G 359
KVMRD G
Sbjct: 369 KVMRDTTPLDKVEGAEKEDGEKKESESSAEDKEEEKKDDADELAKKLDTVTIGGEKKVLG 428
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVGP 418
S+G GFV FS +EA+KA+TE+N KM+ SKPLYVALAQRKE R+++L+ S Q R V
Sbjct: 429 KSKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALAQRKEVRKSQLEASIQARNQV-- 486
Query: 419 RMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQ--LVPGMRPNYFVPMVQPGQQNQR 476
RM A GL QQ + PPQ G Q ++PG R +P VQ Q Q
Sbjct: 487 RM-QQQATAGGLPQQF-------MAPPQMFIGPNGQPMMIPGGRGQ--MPFVQGMPQGQ- 535
Query: 477 PGGRRSGTGPM-QQAQQPIPLMQPRM--LPRGRIYRYPPGCNIPDVPVAGVPGG 527
G+R G M QQ + P P+M +P Y +PP +AG+P G
Sbjct: 536 --GQRGGFPGMPQQGGRGGPAALPQMPQMP----YGFPP-------QMAGMPQG 576
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
+AL A P QQ+ +LGE LYP + + + A K+TGMLLEMD E+++L
Sbjct: 667 AALGAAPPPQQKQMLGEALYPKIHAQQPELAGKITGMLLEMDNEELINL 715
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/467 (49%), Positives = 317/467 (67%), Gaps = 34/467 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T SLGY YVN++ +A+++
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN+T + GKP RIM+S RDP++RK G+GNI+IKNL +IDNK+LH+TFSTFGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
TD G SRG+GFV F+NE A+ AI+ ++GML+ND++V+V + K++R+S + K +F
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN+ + T++++ +++FG++G ITS + +D++GK + FGFVNF+D AA++V+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN +F ++ YVG+AQKKYER ELK ++E + E K++G+NL+VKNLDDSI D+KL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE F+ FGTITS KVMRD G SRG GFV FST EEA+KA+TE N ++V KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 399 RKEERRARL-----QFSQMRPPVG-----------PRMPMYPPVAPGLGQQLFYGQGPPI 442
RKE RR +L +QMR P M PP ++YG PP
Sbjct: 399 RKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPP--------MYYGGIPPR 450
Query: 443 IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQ 489
+P Q G Q+ GM N P QQ RPG G P Q
Sbjct: 451 VPFQ---GPNPQMA-GMPKN----GAMPPQQFGRPGPMYGGFAPQGQ 489
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNF 266
E E+ +T ++YV L T +E L IF G ++S V RDA S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
D + +++E LN K + +Q+ + SL++ N+Y+
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRIMWSQR------------DPSLRKKGSG----NIYI 130
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNL +I + L E FS FG I SCKV D NG+SRG GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 387 VVSKPLYVALAQRKEERRARLQ 408
+ + +YVAL K++R+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++D + + +LF + G++ S + +D S + G+G+VN+ A +A+D
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 100 ELNFTPLNGKPI---RIMYSY-------------RDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN G+ + R Y R + K N+F+KNLD SID++
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F+ FG I S KV D G SRG+GFV F E A AI + N ++ K ++V
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 204 LRKQER 209
RK+ R
Sbjct: 398 QRKEVR 403
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD S++D +L + F G + S +V RD T S G+G+V ++ EAT
Sbjct: 318 KYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEAT 376
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQARN 415
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 198/372 (53%), Positives = 280/372 (75%), Gaps = 2/372 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V+++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 48 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD++IDNKALHDTF+ FGN+LSCK
Sbjct: 108 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCK 167
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
VATD G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + K+ER+S D+ R
Sbjct: 168 VATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRA 227
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKNL + ++ ++F +FG +TS + D +G SK FGFVNF+ ++A +V
Sbjct: 228 QFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAV 287
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ +++ ++ +V +AQKK ERE EL+ +E + E K++G+NLY+KNLDD I D+
Sbjct: 288 DGLHDTEYNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDE 347
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L+ F FGTITS KVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+L
Sbjct: 348 RLRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSL 407
Query: 397 AQRKEERRARLQ 408
AQR+E RR +L+
Sbjct: 408 AQRREVRRQQLE 419
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 266/628 (42%), Positives = 370/628 (58%), Gaps = 79/628 (12%)
Query: 7 QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
Q ++ AA+ S A+NG N+G D S SLYVG+LD SV+++ LYD+F+ +G V
Sbjct: 24 QEESSSGSAAEVSSASNG-GNSGTAVD-----SASLYVGELDPSVSEALLYDIFSPIGPV 77
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD T+ SLGY YVN+N A+++LN+TP+ GKP RIM+S RDP++RK+G
Sbjct: 78 SSIRVCRDAVTKTSLGYAYVNFNDHDSGKVAIEKLNYTPIKGKPCRIMWSQRDPSMRKNG 137
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
+GNIFIKNL IDNKALHDTFS FGNILSCK+ATD G+S+G+GFV F+ + +A AID
Sbjct: 138 SGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDTAASEAID 197
Query: 187 KLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGM+LN +V+V + +++RES A K F NVYVKN+ TE++ +++F +FG
Sbjct: 198 AINGMMLNGLEVYVAAHVSRKDRESKFEAAKANFTNVYVKNVDLEATEEEFEELFKKFGP 257
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS ++ +D++GK + FGFVN+++ + AA++V+ LN +F ++ YVG+AQKKYER EL
Sbjct: 258 ITSISMEKDSEGKFRGFGFVNYENHESAAKAVDELNDLEFKSQKLYVGRAQKKYERLQEL 317
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K ++E++ E K++G+NL+VKNLDD+I D+ LK+ F FGTITS KVMR+ G S+G
Sbjct: 318 KKQYEEAKLEKMAKYQGVNLFVKNLDDTIDDELLKKEFESFGTITSVKVMRNETGKSKGF 377
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYP 424
GFV FS+ EEA++A+TE N ++V KPLYVALAQRK+ RR SQ+ + R M
Sbjct: 378 GFVCFSSPEEATRAITEKNQQIVAGKPLYVALAQRKDVRR-----SQLAQQIQARNQMRY 432
Query: 425 PVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT 484
A G IP Q + Q + G+ P VP +G
Sbjct: 433 QQATAAAAAAAAG-----IPGQ----FMQPMFYGVMPPRGVPF--------------NGA 469
Query: 485 GPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPV-AGVPGGMLPGPYDIGGMPFRDA 543
P Q A P P+ G PV AG+P P G P D
Sbjct: 470 NPQQFAGMP-----PQQFRNG-------------APVYAGMP------PQGAGAPPRNDQ 505
Query: 544 AFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDN--AAKVTGMLLEMDQTEV 601
F+Q + QR LGE LY V D A K+TGM+L++ EV
Sbjct: 506 FFAQ----------------QNQRQALGEELYKKVSAKTSDEEAAGKITGMILDLPPQEV 549
Query: 602 LHLLESPEALKAKVAEAMEVLRNVAQQQ 629
+ LLE+ E + EA + ++Q
Sbjct: 550 MPLLENDELFEQHFKEAFAAYESFKKEQ 577
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/384 (55%), Positives = 285/384 (74%), Gaps = 5/384 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN++ +A RALD
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ LK++F ++G S VM D GKS+ FGF++++ +DA ++VE
Sbjct: 191 TNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVED 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + K +VG+AQKK ER+ ELK KFE +E +++G+NLY+KNLDD+I D+KL
Sbjct: 251 MNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPR-MP 421
RKEER+A L M+ G R MP
Sbjct: 370 RKEERKAHLTNQYMQRIAGMRAMP 393
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LES E+L++KV
Sbjct: 536 SMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKV 595
Query: 616 AEAMEVLR-NVAQQQAT 631
EA+ VL+ + A++ AT
Sbjct: 596 EEAVAVLQAHQAKKDAT 612
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/465 (47%), Positives = 306/465 (65%), Gaps = 69/465 (14%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 178
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 179 VAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+S ++D+ +++F ++G ITS+++ RD +GKS+ FGFVNF + AA++V
Sbjct: 239 NFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAV 298
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E L+GK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + D+
Sbjct: 299 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 358
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGS-------------------------------- 364
KL+++F+EFG ITS KVMRD S GS
Sbjct: 359 KLRQMFAEFGPITSAKVMRD--APSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKA 416
Query: 365 --------------GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R+++L+ S
Sbjct: 417 DKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEAS 476
Query: 411 -----QMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
Q+R P+ M PPV FYGQ P IP
Sbjct: 477 IQARNQLRMQQAAAAAGMPQQYMQPPV--------FYGQQPGFIP 513
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/502 (47%), Positives = 323/502 (64%), Gaps = 76/502 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 59 SASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 119 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 178
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 179 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+S TEDD +++F ++G +TS+++ RD +GKS+ FGFVNF + AA++V
Sbjct: 239 NFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAV 298
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + DD
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 358
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++FSEFG ITS KVMRD
Sbjct: 359 KLRQMFSEFGPITSAKVMRDTPVENEDEKPAEEKKEEQEDKDKENKPEETKEGEEGAEKK 418
Query: 359 ---------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQF 409
G S+G GFV FS ++A+KA+ EMN +MV +KPLYVALAQRK+ R+++L+
Sbjct: 419 AEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVSNKPLYVALAQRKDVRKSQLEA 478
Query: 410 S-----QMRPPVG------PRMPMYPPVAPGLGQQ-LFYGQGPPIIP-PQPGFGYQQQLV 456
S Q+R P+ M PPV GQQ F QG +P PQPG G
Sbjct: 479 SIQARNQLRMQQAAAAAGMPQQYMQPPVYFAPGQQPGFIPQGGRGMPFPQPGMG------ 532
Query: 457 PGMRPNYFVPMVQPGQQNQRPG 478
+P VQ G+ Q PG
Sbjct: 533 --------MPGVQGGRPGQFPG 546
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
+LGE ++P + + + A K+TGMLLEMD +E+++L+E +LKAKV EA+ V +
Sbjct: 680 ILGELIFPKIQAINSELAGKITGMLLEMDNSELVNLIEDDSSLKAKVDEALAVYDEYVKA 739
Query: 629 QA 630
Q
Sbjct: 740 QG 741
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/386 (55%), Positives = 282/386 (73%), Gaps = 10/386 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGP 418
RKEER+A L + S MR P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNP 395
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 118/217 (54%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER++ N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEERKAI-----LTNQYMQRLSTMRT 391
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/372 (53%), Positives = 278/372 (74%), Gaps = 2/372 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 6 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 65
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCK
Sbjct: 66 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER+S + K
Sbjct: 126 VATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIEEMKN 185
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN+ T+++ ++F FG ITS + D +GKS+ FGFVNFD ++A +V
Sbjct: 186 QFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAV 245
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EAL+ ++ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D I D+
Sbjct: 246 EALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDE 305
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L+ F FG ITS KVMRD GIS+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+L
Sbjct: 306 RLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 365
Query: 397 AQRKEERRARLQ 408
AQR+E RR +L+
Sbjct: 366 AQRREVRRQQLE 377
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/412 (54%), Positives = 292/412 (70%), Gaps = 9/412 (2%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GVG + SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+
Sbjct: 7 AGVGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNF 66
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+A RALD +NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNKA++DTF
Sbjct: 67 QQPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTF 126
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FGNILSCKVA D S+GYGFV F+ EESA+ AI+K+NGMLL K+V+VG F +
Sbjct: 127 SMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMA 186
Query: 209 RESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
R +T RF NVY+KN ++ ++ L+K+F +FG ITS AVM DADGKSK FGFV F
Sbjct: 187 RLREMGETTRRFTNVYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAF 246
Query: 267 DDPDDAARSVEALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
++P+DA ++V ++ + +++ YV +AQKK ER ELK ++EQ E +++G+NL
Sbjct: 247 ENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNL 306
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
YVKNLDD+++DD LK+ F +G ITS KVM D NG S+G GFV F +EA+KA+TEMNG
Sbjct: 307 YVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNG 366
Query: 385 KMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRM----PMYPPV-APGLG 431
KM+ +KPLYVALAQRKE+R+A+L M+ RM M+ V PG G
Sbjct: 367 KMMCTKPLYVALAQRKEDRKAQLASQYMQRLASIRMHNAGTMHGTVYTPGTG 418
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/465 (47%), Positives = 306/465 (65%), Gaps = 69/465 (14%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 119
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 239
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN+S ++D+ +++F ++G ITS+++ RD +GKS+ FGFVNF + AA++V
Sbjct: 240 NFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAV 299
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E L+GK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + D+
Sbjct: 300 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 359
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGS-------------------------------- 364
KL+++F+EFG ITS KVMRD S GS
Sbjct: 360 KLRQMFAEFGPITSAKVMRD--APSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKA 417
Query: 365 --------------GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R+++L+ S
Sbjct: 418 DKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEAS 477
Query: 411 -----QMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
Q+R P+ M PPV FYGQ P IP
Sbjct: 478 IQARNQLRMQQAAAAAGMPQQYMQPPV--------FYGQQPGFIP 514
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/458 (48%), Positives = 306/458 (66%), Gaps = 50/458 (10%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY + RAL++L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNK----------ALHDTFSTF 151
N++ + G+ RIM+S RDP +RK+G GNIFIKNLD+ IDNK ALHDTF+ F
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDELIDNKVRTAQKTPPHALHDTFAAF 165
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
GN+LSCKVATD G+SRGYG+V ++ E+A+SAI +NGMLLNDK+V+VG + ++ER+S
Sbjct: 166 GNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKERQS 225
Query: 212 TADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
++ R F N+YVKNL T+D ++F +FG +TS + D +GKSK FGFVNF++
Sbjct: 226 KLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENH 285
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
+ AA++V+ L+ F+ K+ +V +AQKK ERE EL+ +E + E K++G+NLY+KNL
Sbjct: 286 EQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNL 345
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
+D + D+KL+ F FGTITSCKVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ S
Sbjct: 346 EDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGS 405
Query: 390 KPLYVALAQRKEERRARL-----QFSQMRPPVGPRMPMYPPVAPGL-------------- 430
KPLYV+LAQR+E RR +L Q +Q+R M A GL
Sbjct: 406 KPLYVSLAQRREVRRQQLESQIAQRNQIR--------MQQAAAAGLPGGYINGPMYYPPG 457
Query: 431 --------GQQLF-YGQGPPIIPPQPGFGYQQQLVPGM 459
G+ + YGQ P ++PP+P + QQ VPGM
Sbjct: 458 PGAYPPQAGRGMMGYGQ-PGMLPPRPRYAPNQQ-VPGM 493
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/611 (44%), Positives = 361/611 (59%), Gaps = 39/611 (6%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL +V+D+ L D F+ + SVRVC+D ST +SL YGYVN+ + +A RA++
Sbjct: 12 ASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIE 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N + LNGK +R+M+S RDP RK+ GN+F+KNL +SIDN L D F +GNILS KV
Sbjct: 72 LKNNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKV 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
G+S+GYGFVQF++EES+ AI+KLNG + DKQ++VG F++K +R R+
Sbjct: 132 VMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARYT 191
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL +E L++ F FG I S + +D G SK FGFVN+D+PDDA R++EA+
Sbjct: 192 NLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAM 251
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG K K YV +AQKK ERE L +FE+ KE K++G N+YVKN+DD +SD++L+
Sbjct: 252 NGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELR 311
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS G ITS K+MRD GIS+G GFV FST EEA+KA+ +G M KPLYVALAQR
Sbjct: 312 DHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQR 371
Query: 400 KEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPI--IPPQPGFGYQQQ-LV 456
KE+R+A+LQ + G P + PG +Y I +PP+ G YQ +
Sbjct: 372 KEDRKAQLQLQYAQQVAGLSGPS-TAIIPGGYPPYYYAATGVISHVPPRAGLMYQHLPMR 430
Query: 457 PGMRPNYF-----------VPMVQPGQQNQRPG-GRRSGTGPMQ----------QAQQ-P 493
PG N F VP V + R GR +G Q QAQQ
Sbjct: 431 PGWGANGFALPARSFQQSPVPAVSNNTRQHRQNRGRLNGNPIAQGNTHSVTYLPQAQQIS 490
Query: 494 IPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA 553
P++ R +Y P D+ + +
Sbjct: 491 QPVISSSTQQRTGQAKYLPSGRQRDMEKGSGSSSS------------GSNSGRGSQGSEM 538
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
L S LA A+PEQQ+ +LGE+LY LV +L+ AAK+TGMLLEMD E+L LLESPE+L A
Sbjct: 539 LHSMLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLSA 598
Query: 614 KVAEAMEVLRN 624
KV EA++VL+N
Sbjct: 599 KVEEAVQVLKN 609
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 160/290 (55%), Gaps = 27/290 (9%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +L+V +L S++++ L D+F + G ++S +V +S GYG+V + +
Sbjct: 93 DARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVVMS-EDGKSKGYGFVQFESEE 151
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA---------GNIFIKNLDKSIDNKA 143
+ A+++LN + + K + Y ++KS N+++KNLD +
Sbjct: 152 SSNVAIEKLNGSTVGDKQL-----YVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEAT 206
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS+FG I+S +A D++G S+G+GFV +DN + AK A++ +NG L K ++V
Sbjct: 207 LQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVARA 266
Query: 204 LRKQERESTAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
+K ERE K + +N+YVKN+ + ++++L+ F GIITS +M
Sbjct: 267 QKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGIITSAKIM 326
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
RD G SK FGFV F P++A ++V +G F K YV AQ+K +R+
Sbjct: 327 RDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRK 376
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 244/542 (45%), Positives = 336/542 (61%), Gaps = 82/542 (15%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +A
Sbjct: 57 ASASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKA 116
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + +P RIM+S RDP +RK+G GNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 117 LEELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSC 176
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A+ AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 177 KVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 236
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
+ N+Y+KNL T+D+ +K+F ++G +TS+ + RD + GKS+ FGF+NF + AA+
Sbjct: 237 ANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAK 296
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+VE LN ++ +E YVG+AQKK+ERE EL+ +E + +E A K+ G+NLY+KNLDD +
Sbjct: 297 AVEELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVD 356
Query: 335 DDKLKELFSEFGTITSCKVMRDPN------------------------------------ 358
D+KL+ELF+ +G ITS KVMR+
Sbjct: 357 DEKLRELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEGAAEGEA 416
Query: 359 --------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
G S+G GFV FS ++A+KA+TEMN +MV KPLYVA+AQ+KE R+
Sbjct: 417 DASGEKQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQKKEVRK 476
Query: 405 ARLQFS-QMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP-GMRPN 462
++L+ S Q R + RM VA GL Q Y Q PP G QQ +P G R
Sbjct: 477 SQLEASIQARNTL--RMQQAAAVA-GLPQT--YMQPQVYYPP----GQQQAFLPQGGRGM 527
Query: 463 YF------VPMVQPGQQNQ-RPGGRRSGTGPMQQAQQPIPLMQPRMLP---RGRIYRYPP 512
F +P VQ G+ Q PGG TGP Q + +P P+ LP G ++PP
Sbjct: 528 AFPQGGLGIPGVQGGRPGQFAPGGF---TGP--QGGRGLP---PQQLPPNVYGLPGQFPP 579
Query: 513 GC 514
G
Sbjct: 580 GV 581
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 48/70 (68%)
Query: 560 NASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
N + +QQ+ +LGE ++P + + + A K+TGMLLEMD E++HL+E ALKAKV EA+
Sbjct: 693 NGNVQQQKQILGEAIFPKIQNFQPELAGKITGMLLEMDNQELVHLIEDESALKAKVDEAL 752
Query: 620 EVLRNVAQQQ 629
V ++ + Q
Sbjct: 753 GVYQDYVKAQ 762
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/399 (54%), Positives = 282/399 (70%), Gaps = 19/399 (4%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A AA PA+ +AN +SLYVGDL+ V ++QL++LF+ +G V S+RVC
Sbjct: 8 APAATTQPASTPLAN------------SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVC 55
Query: 73 RDLSTRRSLGYGYVNYNAA---HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RD TRRSLGY YVNYN+A A RA++ LN+ +NGKP+RIM+S+RDP+ RKSG GN
Sbjct: 56 RDAVTRRSLGYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGN 115
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLDK+ID KALHDTFS FG ILSCKVATD+ G S+GYGFV F+++ +A AI +N
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVN 175
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
+ K V+VGPF ++ +R + NV+VKNL +D+L K+ E G ITS
Sbjct: 176 QKEIEGKIVYVGPFQKRADRPQDV----YTNVFVKNLPADIGDDELGKMATEHGEITSAV 231
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VM+D G SK FGF+NF D + AA+ VE LN ++ K Y G+AQKK ERE L+ K E
Sbjct: 232 VMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAE 291
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
+S +E K++G+NLYVKNL D + DD L+ELF+ GTITSCKVM+D +G S+G GFV F
Sbjct: 292 ESKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCF 351
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
++ +EA++A+TEMNGKMV KPLYVALAQRK+ RRA+L+
Sbjct: 352 TSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQLE 390
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 47/61 (77%)
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
PEQQ+ ++GE LYP V +L+ D A K+TGMLLEMD E+L LLES EAL +KV EA+ VL
Sbjct: 565 PEQQKMMIGERLYPQVAELQPDLAGKITGMLLEMDNAELLMLLESHEALVSKVDEAIAVL 624
Query: 623 R 623
+
Sbjct: 625 K 625
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 360/645 (55%), Gaps = 64/645 (9%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F S SLYVGDL V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ ++A R
Sbjct: 38 FPSASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARR 97
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ L + + GK +RIM+S+RDP++RKSGAGN+FIKN+D+SID KAL+D FS +G ILS
Sbjct: 98 ALEALKYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSPYGQILS 157
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-- 214
CKVATD G+SRGYGFV FD E +A AI NGM L +K++FV PF+R+ ER S+
Sbjct: 158 CKVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVRRSERVSSTKLE 217
Query: 215 ---KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+F N+YV+N E E+ LK+ F FG ITS + D G+ F F+N+ +
Sbjct: 218 DGVDEKFTNLYVRNFPENWNEEILKENFSPFGEITSMMMKSDPLGRK--FAFINYAENSM 275
Query: 272 AARSVEALNGKKFDDK-----------------EWYVGKAQKKYEREMELKGKFEQSLKE 314
A ++E +NGK F K + V Q + R LK K++ E
Sbjct: 276 AKAAIETMNGKDFSIKSGDKSTIEGEDTDKSETKLLVCAHQDRARRHAMLKAKYDSMHAE 335
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374
K++G+NLY+KNLDDSI+D +L+ELF FG ITSCKVM D +G S G GFV F + E+
Sbjct: 336 NKSKYQGVNLYIKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVCFVSPED 395
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQ------------MRPPVG--PRM 420
A+ A++EM+ K+V +KPLYV LA+++E+R RLQ M PP G P M
Sbjct: 396 ATHAVSEMHLKLVHNKPLYVGLAEKREQRLNRLQMRYKVGHNRDGMPMGMLPPHGMMPPM 455
Query: 421 PMYPPVAPGLGQQLFYGQGPPIIPPQPG-------FGYQQQLVPGMRP------------ 461
M P+ P GQ ++ P I P + ++ Q PG+ P
Sbjct: 456 HMGVPMMPVNGQYMY--PNPNIHGPNSSQQNAMMPYQWRHQYHPGIPPVGMQVPFNARGA 513
Query: 462 NYFVPMVQPGQQNQRPGGRRSGTGPMQQ-AQQPIPLMQP--RMLPRGRIYRYPPGCNIPD 518
N VPM R G R P+Q+ Q M + P+ R + D
Sbjct: 514 NMPVPMRVYNPMGNR--GVRGQNVPVQKLGQNGDKAMGDGFKFTPQARNRMEMVQSDHSD 571
Query: 519 VPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV 578
AG +P RD+ + + A+ LA A P Q+ +LGE L+P++
Sbjct: 572 PATAGNARAHARATATTSAVPGRDSNDTTFQEAHITAATLAAAHPNMQKQMLGEKLFPII 631
Query: 579 DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A KVTGM+LEMD +E+L LLES + L AK EA+ VL+
Sbjct: 632 ARHNPELAGKVTGMMLEMDNSELLILLESEKQLIAKADEAIRVLQ 676
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 283/743 (38%), Positives = 394/743 (53%), Gaps = 162/743 (21%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 117 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 177 VAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ + T+++ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +
Sbjct: 237 NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAA 296
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN + ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 297 VEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 336 DKLKELFSEFGTITSCKVMRDP----------------------NGISRGSGFVAFSTAE 373
+KL+ELFS +G ITS KVMR+ G + S +E
Sbjct: 357 EKLRELFSSYGNITSAKVMREAIVDVPAETEKDKEADKEKAKKEGGDKSEEKGESKSESE 416
Query: 374 EASKALTEMNGKMVVSKP--------------------------------------LYVA 395
+ SK+ + GK +KP LYVA
Sbjct: 417 DKSKSEEKTEGKTESTKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVA 476
Query: 396 LAQRKEERRA----------RLQFS---QMRPPVGPRMPMYP---PVAPGLGQ-----QL 434
LAQRK+ R++ R QF+ Q+ + R + A G+ Q +
Sbjct: 477 LAQRKDVRKSQVSTKVIHLIRSQFTNIYQLEASIQARNTIRQQQVAAAAGMAQPFMQPAV 536
Query: 435 FYGQGPPIIPPQPGF--GYQQQLVPGMRPNYFVPMVQPGQQNQRPG------GRRSGTGP 486
FYG P Q GF G Q+ GM+ MV PG RPG G++ G G
Sbjct: 537 FYG-----APGQQGFLPGAQR----GMQFAGQAGMVMPGMPGGRPGQFPQFPGQQGGRG- 586
Query: 487 MQQAQQPIP---LMQPRMLPRGRIY--RYPPGCNIPDV---------------------- 519
QP+P M + +P G + P G N P +
Sbjct: 587 -MNPNQPLPPNFGMGSQGIPMGAMQGAGIPNGLNYPQIGGQVQSFGRGGGRGQGPMQGMP 645
Query: 520 PVAGVPGGMLPGPYDIG-----GMPF----------------------RDAAFSQPMQTG 552
P AG M GP G GMP RD A +G
Sbjct: 646 PAAGNAPQMRGGPGAPGFAQGRGMPMQQGGRAGPGGRGQGAPGQGGIPRDEAAG----SG 701
Query: 553 ALASALANASPE-QQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
++ A+ NA+PE QQ+ +LGE +YP + + + A K+TGMLLEMD +E++ L++ AL
Sbjct: 702 SINLAVFNAAPEPQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVAL 761
Query: 612 KAKVAEAMEVLRNVAQQQATGPS 634
+AKV EA+ V + + P+
Sbjct: 762 RAKVDEALTVYDEYVKNKNDAPT 784
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 153/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 226 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNE 275
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+
Sbjct: 276 TGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELR 326
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 262/629 (41%), Positives = 355/629 (56%), Gaps = 103/629 (16%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSG--------------------------------VV 99
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 100 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 158
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 218
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 219 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 278
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 279 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 337
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 338 RKEERQAHLTNQYMQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 397
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 398 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 450
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 451 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 503
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 504 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 554
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 555 EIDNSELLHMLESPESLRSKVDEAVAVLQ 583
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 155 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 211
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 212 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 271
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 272 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 330
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 331 LYVALAQRKEERQA-----HLTNQYMQRMA 355
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFST 371
+A + +LYV +L +++ L E FS G I S +V RD I+R G +V F
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVNFQQ 61
Query: 372 AEEASKALTEMNGKMVVSKPLYVALAQR 399
+A +AL MN ++ KP+ + +QR
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 241/500 (48%), Positives = 321/500 (64%), Gaps = 56/500 (11%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 60 ASASLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKA 119
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 120 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 179
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 180 KVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 239
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSKCFGFVNFDDPDDAAR 274
F N+YVKN+ T+++ +++F +FG +TS ++ RD D KS+ FGFVNF + + AA+
Sbjct: 240 ANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAK 299
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLYVKNLDD +
Sbjct: 300 AVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVD 359
Query: 335 DDKLKELFSEFGTITSCKVMRDPN------------------------------------ 358
DDKL+ELF+ FG+ITS KVMRD
Sbjct: 360 DDKLRELFTPFGSITSAKVMRDTPAETAEAEEKEKKDSEKNKENIKEGETAEAENTEDKP 419
Query: 359 -------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS- 410
G S+G GFV F+ EEASKA+T+MN +MV +KPLYVALAQRK+ R+ +L+ S
Sbjct: 420 KSEKRTVGKSKGFGFVCFNNPEEASKAVTDMNQRMVNNKPLYVALAQRKDVRKNQLEASI 479
Query: 411 QMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP--QPGFGYQQQLVPGMRPNYFVPMV 468
Q R + RM A G+ QQ Q P PP QPGF Q P +P+
Sbjct: 480 QARNQI--RM-QQAAAAAGMPQQFM--QTPMFYPPGQQPGFIPQAGRGMAFPPQAGMPI- 533
Query: 469 QPGQQNQRPGGRRSGTGPMQ 488
PG Q RPG +G P Q
Sbjct: 534 -PGAQGGRPGQFPAGFPPQQ 552
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
GALA L+ P QQ+ LLGE L+P + L+ + A K+TGMLLEM+ E+++L+E AL
Sbjct: 688 GALAQQLSAVPPAQQKQLLGEALFPKIQVLQPELAGKITGMLLEMENQELVNLIEDDSAL 747
Query: 612 KAKVAEAMEV 621
++KV EA+ V
Sbjct: 748 RSKVDEALTV 757
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/484 (47%), Positives = 316/484 (65%), Gaps = 59/484 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+TP+ G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+S T+++ +++F ++G +TS+++ RD +GKS+ FGFVNF + A ++V
Sbjct: 238 NFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNG F +E YVG+AQKK+ERE EL+ +E + E A K++G+NLY+KNLDD + DD
Sbjct: 298 DELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDD 357
Query: 337 KLKELFSEFGTITSCKVMRDP--------------------------------------- 357
KL+++FSEFG ITS KVMRD
Sbjct: 358 KLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKKAEK 417
Query: 358 -----NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-- 410
G S+G GFV FS ++A+KA+ EMN +M+ +KPLYVALAQRK+ R+++L+ S
Sbjct: 418 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQ 477
Query: 411 ---QMRPPVG------PRMPMYPPVAPGLGQQL-FYGQGPPIIP-PQPGFGYQQQLVPGM 459
Q+R P+ M PPV GQQ F QG +P PQPG Q PG
Sbjct: 478 ARNQLRMQQAAAAAGMPQQFMQPPVFYAPGQQPGFIPQGGRGMPFPQPGMPLPQGGRPGQ 537
Query: 460 RPNY 463
P Y
Sbjct: 538 FPGY 541
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
+LGE ++P + + + A K+TGMLLEMD TE+++L+E ALKAKV EA+ V +
Sbjct: 673 ILGELIFPKIQAINSELAGKITGMLLEMDNTELVNLIEDEAALKAKVDEALAVYDEYVKS 732
Query: 629 QATGP 633
Q TGP
Sbjct: 733 QGTGP 737
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/622 (40%), Positives = 368/622 (59%), Gaps = 41/622 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVGDLD V++ +L D+F+ MG +VSVR+CRD + +SL Y YVN+ +A++AL
Sbjct: 30 ALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALAC 89
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN T L GKP+RIM+S+RDP RK+G N+F+KNLD SI++ +L D F FGNILSCKVA
Sbjct: 90 LNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA 149
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
++ G+S+ +GFVQFD+++SA +A++ LN +L+ K++FV F++K ER+ +++T+F N
Sbjct: 150 EEN-GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTN 208
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VYVKNL E TED ++ F EFG + + +M+D +GKS+ FGFVNF+ PD+A ++VEALN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G K+ +VG+AQKK ER+ LK + E + K + NLYVKNLD S+ DDKL+E
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS G ITS KVMR +G+S+G GFV FST+EEA KALT +NG ++ + LY+A+AQRK
Sbjct: 328 HFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 401 EERRARLQ---FSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPP--IIPPQPGFGYQQQL 455
E+R+ L+ + GP +P F P I PQP Q
Sbjct: 388 EDRQRVLRDYYSQYLLQYYGPHFLSSGSSSPDYSFVPFPHPNPTPQINSPQPIICQQFGR 447
Query: 456 VPG-MRP----NY------FVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
G MRP NY F+PM Q Q N G + + ++ P +
Sbjct: 448 NLGVMRPFAPQNYQQNFSTFIPMKQAQQGNTNNWGYQQNSRTFATSKVPTQGLNYASPSN 507
Query: 505 GRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPE 564
+++ G N A G + + P Q+ ++
Sbjct: 508 QKLHFKKKGNNKSGSEEASSKGSVSEKHF-----------IRAPAQSNVWGNS------- 549
Query: 565 QQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRN 624
+ ++G +LYPLV L+ + A K+TGMLLEM+ ++++ LL+SP++L +V +A++ L+
Sbjct: 550 --KEIIGHHLYPLVHSLQPELAGKITGMLLEMNNSDIIKLLDSPDSLAVQVEQAVQALKE 607
Query: 625 VAQQQATGPS---PTDRVASLS 643
++T S P + + LS
Sbjct: 608 AKAWRSTESSVALPIESASCLS 629
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/465 (49%), Positives = 307/465 (66%), Gaps = 18/465 (3%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD ++ ++ LYD+F+ +G + S+RVCRD T+ SLGY YVNY +A+
Sbjct: 49 NASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAI 108
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
ELN+ +NG+P RIM+S RDP IRK G+GNIFIKNL +IDNKALH+TFSTFG +LSCK
Sbjct: 109 QELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G SRG+GFV F E AK AI+ +NGML+N +V+V + K++R S + K
Sbjct: 169 VALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA 228
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ TT+++ +++F ++G I S A+ +DA+GK K FGFVNF D + AA++V
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F + YVG+AQKKYER ELK ++EQ E KF+G+NL++KNLDDSI D+
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDE 348
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE F+ +GTITS +VMRD G S+G GFV FS+ EEA+KA+TE N ++V KPLYVA+
Sbjct: 349 KLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAI 408
Query: 397 AQRKEERRARL-----QFSQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQGPPIIPPQPG 448
AQRK+ RR++L +Q+R + A GQ Q+FYG P P P
Sbjct: 409 AQRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQYMPQMFYGVMAPRGFPGPN 468
Query: 449 FGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQP 493
G + G+ N VP P Q RP GPM Q P
Sbjct: 469 PGMNGPMGAGIPKNGMVP--PPQQFAGRP------NGPMYQGMPP 505
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 25/142 (17%)
Query: 501 MLPRGRIYRYP---PGCNIPDVPVAGVP-GGMLPGPYDIGGMPFRDAAFSQPMQTGA--- 553
M PRG +P PG N P AG+P GM+P P G P + PM G
Sbjct: 459 MAPRG----FPGPNPGMNGP--MGAGIPKNGMVPPPQQFAGRP------NGPMYQGMPPQ 506
Query: 554 ----LASALANASPEQQRTLLGENLYPLVD-QLEHDNAA-KVTGMLLEMDQTEVLHLLES 607
++QR LGE LY V +++ +NAA K+TGM+L++ +V+ LL++
Sbjct: 507 NQFPRHQQQHYIQQQKQRQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDN 566
Query: 608 PEALKAKVAEAMEVLRNVAQQQ 629
E + + EA+ N ++Q
Sbjct: 567 DEQFEQQFQEALAAYENFKKEQ 588
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 274/651 (42%), Positives = 374/651 (57%), Gaps = 61/651 (9%)
Query: 30 GVGDARQ-FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G+ D +Q + S SLYVGDL V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY
Sbjct: 20 GLRDNQQLYNSASLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNY 79
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ +A AL+ LN+ + G P RIM+S +DPT+RKSGAGNIF+KNLD+SID KA +DTF
Sbjct: 80 YSVQDAEAALESLNYIDIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTF 139
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FG ILSCKVA D G S+GYGFV +D EESAK AI+K+NGM++ K+V V PF++KQ+
Sbjct: 140 SHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQD 199
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
R+ A F N+YV+N + E+ LK+ ++G ITS +M DGK + F FVNF +
Sbjct: 200 RD-PASVDVFTNLYVRNFPVSWDEEALKQFLDKYGEITS--MMIKEDGKGRKFAFVNFAE 256
Query: 269 PDDAARSVEALNGKKFDD--KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
P+ A +VEALNG K ++ + V Q K +R+ LK ++ L + NLY+
Sbjct: 257 PEMAKEAVEALNGTKLEEGSEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKASSNLYI 316
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLDDS +D+ L+ELF +FG+ITSCK+MRD +G+SRG GFV FS EEA+KA+ M+ K+
Sbjct: 317 KNLDDSFTDESLQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGMHLKI 376
Query: 387 VVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPM--YPPVAPGL-GQQ---LFYGQGP 440
V KPLYV LA++KE+R +RLQ S R G M P V G+ G Q FYGQG
Sbjct: 377 VKGKPLYVGLAEKKEQRLSRLQQSS-RSRNGDSMNQGPIPSVLHGVPGYQDASGFYGQGF 435
Query: 441 PIIPPQPGFG------YQQQLVPGMRPNYFVPMVQP------------GQQNQRPGGRRS 482
P G Y Q +P M N + P G N G
Sbjct: 436 RGGPQGVGVPGRGVRMYPQSHIPVMPRNMHLSSGSPLPPNNAGLSGMQGSPNLHSG--MQ 493
Query: 483 GTGPMQQAQQPIPLMQP--RMLPRGRIYRYPPGCNIPDV-----------PVAGVPGGML 529
G+ ++ Q P + P ++ P G +P IP+V PV+G
Sbjct: 494 GSPSLRSGLQGTPNIHPGIQVTPHGAPNIHPAMPTIPNVIQRRVMPTKNAPVSGFKFTAQ 553
Query: 530 PGPYDIG-------------GMPFRDAAFSQPMQTGALASALANASPEQ-QRTLLGENLY 575
++G GMP + A Q MQ +A + Q+ ++GE L+
Sbjct: 554 ARNREVGSTMSMGVPMHPNMGMPTQ-APGQQTMQPAMQGNATTHLDDTAFQKQMIGERLF 612
Query: 576 PLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 626
P+V + D A K+TGM+LE+D E+L LLE LKAK+ EA+ VL+ +
Sbjct: 613 PIVARDNPDLAGKITGMMLEIDNAELLALLEDDARLKAKIDEAIRVLKQAS 663
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/439 (48%), Positives = 302/439 (68%), Gaps = 14/439 (3%)
Query: 16 AQPSPATNGIANNGG----VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV 71
+ P+PAT A G +TSLYVG+LD SV ++ L+++FN +G V S+RV
Sbjct: 18 SNPAPATEQPAAGNGEQANRNADAAANNTSLYVGELDPSVTEAMLFEIFNMIGPVASIRV 77
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD TRRSLGY YVN+ A + RA+++LN++ + +P RIM+S RDP +R++G GNIF
Sbjct: 78 CRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIF 137
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
IKNLD IDNKALHDTF+ FGNILSCKVAT G S GYGFV ++ E+A +AI +NGM
Sbjct: 138 IKNLDAGIDNKALHDTFAAFGNILSCKVATSESG-SLGYGFVHYETAEAADAAIKHVNGM 196
Query: 192 LLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLNDK+V+VG + ++ER++ +++R F NVY KN+ T+++ +K+F ++G ITS
Sbjct: 197 LLNDKKVYVGHHIPRKERQAKIEESRARFTNVYCKNVDADVTDEEFEKLFTKYGKITSCV 256
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+ RD DGKSK FGFVNF++ D+A +V+ L+ F ++ +V +AQKK ERE EL+ +E
Sbjct: 257 LQRDEDGKSKGFGFVNFENHDEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYE 316
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
+ E KF+G+NLY+KN+ +S D++L++ F+ FG ITSCK+MR P+G+SRG GFV +
Sbjct: 317 AAKNEKLAKFQGVNLYLKNIPESYDDERLRDEFAPFGAITSCKIMRAPSGVSRGFGFVCY 376
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPG 429
S EEA+KA++EMNGKM+ ++PLYVALAQRK+ RR +L+ M+ A G
Sbjct: 377 SAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRNQLRLQQQ--AAAQG 434
Query: 430 LGQQLFYGQGPPIIPPQPG 448
+G GP + PQPG
Sbjct: 435 MGY-----PGPGMYYPQPG 448
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 525 PGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHD 584
PG P P G P + A+ALA ASP++Q+ +LGE +YP V + +
Sbjct: 440 PGMYYPQP---GAFPGQPGGMGDEAPGALTAAALAKASPDEQKQMLGEAIYPKVAASQPE 496
Query: 585 NAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 627
A K+TGM+LE+ TE+LHLLE EAL AKV+EA+EVL+ Q
Sbjct: 497 LAGKLTGMILELPVTELLHLLEESEALDAKVSEALEVLKEYQQ 539
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/370 (58%), Positives = 276/370 (74%), Gaps = 3/370 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS +G ITS KVM D G S+G GFV F+ A EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARL 407
QRKEER+A L
Sbjct: 363 QRKEERKAHL 372
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 279/742 (37%), Positives = 391/742 (52%), Gaps = 161/742 (21%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 73 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 132
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 133 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 192
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 193 VAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 252
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ + T+++ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +
Sbjct: 253 NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAA 312
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN + ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 313 VEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 372
Query: 336 DKLKELFSEFGTITSCKVMRDP----------------------NGISRGSGFVAFSTAE 373
+KL+ELFS +G ITS KVMR+ G + S +E
Sbjct: 373 EKLRELFSSYGNITSAKVMREAIVDVPAETEKDKEADKEKAKKETGDKSEEKGESKSESE 432
Query: 374 EASKALTEMNGKMVVSKP--------------------------------------LYVA 395
+ SK+ + GK +KP LYVA
Sbjct: 433 DKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVA 492
Query: 396 LAQRKEERRARL-------------QFSQMRPPVGPRMPMYP---PVAPGLGQ-----QL 434
LAQRK+ R++++ Q+ + R + A G+ Q +
Sbjct: 493 LAQRKDVRKSQVSTKVIHFLRSQVTNIYQLEASIQARNTIRQQQVAAAAGMAQPFMQPAV 552
Query: 435 FYGQGPPIIPPQPGF--GYQQQLVPGMRPNYFVPMVQPGQQNQRPG------GRRSGTGP 486
FYG P Q GF G Q+ GM+ MV PG RPG G++ G G
Sbjct: 553 FYG-----APGQQGFLPGAQR----GMQFAGQAGMVMPGMPGGRPGQFPQFPGQQGGRG- 602
Query: 487 MQQAQQPIP---LMQPRMLPRGRI--YRYPPGCNIPDV---------------------P 520
QP+P M + +P G + P G N P + P
Sbjct: 603 -MNPNQPLPPNFAMSGQGIPMGAMQGTGIPNGLNYPQLGQVQSFGRGGGRGQGPMQGMPP 661
Query: 521 VAGVPGGMLPGPYDIG-----GMPF----------------------RDAAFSQPMQTGA 553
AG M GP G MP RD A +G+
Sbjct: 662 AAGNAPQMRGGPGAPGFAQGRSMPIQQGGRAGPGGRGQGAPGQGGIPRDEAAG----SGS 717
Query: 554 LASALANASPE-QQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
+ A+ NA+PE QQ+ +LGE +YP + + + A K+TGMLLEMD +E++ L++ AL+
Sbjct: 718 INLAVFNAAPEPQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALR 777
Query: 613 AKVAEAMEVLRNVAQQQATGPS 634
AKV EA+ V + + P+
Sbjct: 778 AKVDEALTVYDEYVKNKNDAPT 799
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 153/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 66 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 125
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 126 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 181
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 182 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 241
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 242 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNE 291
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+
Sbjct: 292 TGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELR 342
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 271/634 (42%), Positives = 372/634 (58%), Gaps = 75/634 (11%)
Query: 13 AVAAQPSPATNGI---ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
A +A P P NG+ N G F S SLYVG+L V ++ LY++FN +G V S+
Sbjct: 7 AGSAAPRP-INGVLPVGNYQGQPARSSFNSASLYVGNLLPEVTEAMLYEVFNGIGPVASI 65
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD TR+SLGY YVNY +A AL+ LN+ + G+P RIM+S RDP++RKSG GN
Sbjct: 66 RVCRDSLTRKSLGYAYVNYYNFQDAEAALECLNYIEIKGQPARIMWSERDPSLRKSGTGN 125
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IF+KNLDK+ID KAL+DTFS FG ILSCKVA DSLG S+GYGFV + EESAK AI+K+N
Sbjct: 126 IFVKNLDKAIDTKALYDTFSHFGTILSCKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVN 185
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML+ + QV V PFLR+ ER ST F N+YV+N +T TEDDL + F ++G ITS
Sbjct: 186 GMLIGNSQVSVAPFLRRNERTSTVGDV-FTNLYVRNFPDTWTEDDLHQTFSKYGEITS-- 242
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE--WYVGKAQKKYEREMELKGK 307
++ +D K + F FVNF D + A ++E NG KF+ E V + K R LK +
Sbjct: 243 LLLKSDDKGRRFAFVNFVDTNMAKAAMEGENGVKFESVEEPMMVCQHMDKARRYAMLKAQ 302
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
++ + ++ +KF G+NLY+KNLDD DD L++LF ++GT+TS KVMRD NG+SRG GFV
Sbjct: 303 YDSNAQDQRNKFMGVNLYIKNLDDDFDDDGLRDLFKQYGTVTSSKVMRDHNGVSRGFGFV 362
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPV---GPRMPMYP 424
FS +EA+KA+ M+ K+V +KPLYV LA+++E+R +R+Q + + G R P Y
Sbjct: 363 CFSRPDEATKAVAGMHLKLVKNKPLYVGLAEKREQRASRMQQRNRQNDMMQYGDR-PGYV 421
Query: 425 PVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT 484
P+ PP + PQ F +Q G RP VP QP G
Sbjct: 422 PLY------------PPEMVPQGYFNHQV----GFRPT--VP-AQP-----------MGV 451
Query: 485 GPM-QQAQQPIPLMQ------PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
GP + P+P+M P +GR PV VP + G
Sbjct: 452 GPRGMRMVAPMPMMHGRGTASPHAAAQGR-----------RTPVKQVP---------LSG 491
Query: 538 MPFRDAAFSQP-MQTGALASALANASP----EQQRTLLGENLYPLVDQLEHDNAAKVTGM 592
F A ++ + GA A+A+ P + ++GE L+P+V + + A K+TGM
Sbjct: 492 FKFTAQARNRTELPNGAPAAAVPTQRPIDGAAMHKQMIGERLFPIVARENPELAGKITGM 551
Query: 593 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 626
+LEMD E++ LLE+ + LK K+ EAM VL+ +
Sbjct: 552 MLEMDNQELMALLENEQQLKDKIQEAMRVLKQAS 585
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 264/601 (43%), Positives = 353/601 (58%), Gaps = 70/601 (11%)
Query: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 82
N ++ G G STSLYVGDLD SV+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 23 NAPSSTGSEGQQSDSNSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLG 82
Query: 83 YGYVNYNAAHEATR-ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
Y YVN+ A HEA + A++ LN+TP+ G+ RIM+S RDP +RK G GNIFIKNL+ IDN
Sbjct: 83 YAYVNF-ADHEAGKVAIERLNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDN 141
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
KAL+DTFS FGNILS K+ATD G S+G+GFV F+ E +AK AID LNGMLLN ++++V
Sbjct: 142 KALYDTFSVFGNILSSKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVA 201
Query: 202 PFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
P L ++ER+S +KTR F NVYVKN+ TTE++ K++F + G +S + + DGK K
Sbjct: 202 PHLSRKERDSQLEKTRANFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLK 261
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF 319
FGFVN+++ +DA ++VE LN +F +E YVG+AQKKYER LK ++E + E K+
Sbjct: 262 GFGFVNYENHEDALKAVEELNNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAKY 321
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
+G+NL++KNLDDSI D+KLKE F+ FGTITS KVMR NG S+G GFV FS+ EEA+KA+
Sbjct: 322 QGVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAI 381
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQG 439
TE N ++V KPLYVA+AQRKE RR SQ+ + R M A G
Sbjct: 382 TEKNQQIVAGKPLYVAIAQRKEVRR-----SQLAQQIQARSQMRYQQATAAAAAAAAGIP 436
Query: 440 PPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP 499
+PP + G+ P VP GP Q +P P
Sbjct: 437 GQFMPP---------MFYGVMPPRGVPF----------------NGPNPQQMNGVP---P 468
Query: 500 RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALA 559
+ G +Y PP G P G P + G A+
Sbjct: 469 QQFRNGPMYGMPP---------QGAPQGGFP-------------------RNGNNANQFY 500
Query: 560 NASPEQQRTLLGENLYPLVDQLEHDN--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 617
++QR LGE LY + D A K+TGM+L++ EV+ LLE+ E + E
Sbjct: 501 Q---QKQRQALGEQLYKKISAKTSDEEAAGKITGMILDLPPQEVVSLLENDELFEQHFTE 557
Query: 618 A 618
A
Sbjct: 558 A 558
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 257/622 (41%), Positives = 354/622 (56%), Gaps = 89/622 (14%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G ++S+RVCRD+ T RSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSG--------------------------------VV 99
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G +GYGFV F+ +E+A+ AI+K+NGMLLND++VFVGPF ++ERE+ A F
Sbjct: 100 CDENG-PKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRKEREAELGARAKEF 158
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 159 TNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDV 218
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 219 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 278
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 279 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 337
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 338 RKEERQAHLTNLYMQRMASVRAVPNPLINPYQPAPPSAYFMAAIPQTQNRAAYYPPRQIA 397
Query: 443 -IPPQPGFGYQQ------QLVPG-------------MRP-NYFVPMVQPGQQNQRPGGRR 481
+ P P + Q Q +PG MRP + VP V Q+ +
Sbjct: 398 QLRPSPRWTAQGARPHPFQNMPGAIHPAAPRPPFSTMRPASSQVPRVMSTQRVADTSTQT 457
Query: 482 SGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFR 541
G P A P + R +P+ Y+Y G P + P + P
Sbjct: 458 KGPRPAAAAAAATPAV--RTVPQ---YKYAVGVRNPQQHLNAQPQVTMQQP--------- 503
Query: 542 DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+
Sbjct: 504 --AVHVQGQEPLTASMLASAPPQEQKQMLGEWLFPLIQAMHPSLAGKITGMLLEIDNSEL 561
Query: 602 LHLLESPEALKAKVAEAMEVLR 623
LH+LESPE+L++KV EA+ VL+
Sbjct: 562 LHILESPESLRSKVDEAVAVLQ 583
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 113/210 (53%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D L DLF + G +SV+V D S + S G+G+V++ +
Sbjct: 155 AKEF--TNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 211
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+D +N LNGK I R + I + N+++KNLD
Sbjct: 212 AQKAVDVMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 271
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 272 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 330
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N+Y++ ++
Sbjct: 331 LYVALAQRKEERQA-----HLTNLYMQRMA 355
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 273/683 (39%), Positives = 367/683 (53%), Gaps = 139/683 (20%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL + ++ +++F ++G ITS ++ RD + GKS+ FGF F + AA +
Sbjct: 234 NFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K++ ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 294 VEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 336 DKLKELFSEFGTITSCKVMRDPNG------------------------------------ 359
+KL++LF FG ITS +VMRD G
Sbjct: 354 EKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSD 413
Query: 360 --------------ISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ + GF V FS +EASKA+TEMN +MV KPLYVALAQRK+ R
Sbjct: 414 KVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 404 RARLQFS----------QMRPPVGPRMP-MYPPVAPGLGQQLF------------YGQGP 440
+++L+ S Q+ G P M P V GQQ F +GQ P
Sbjct: 474 KSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAAQRGGMAFGQQP 533
Query: 441 PIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQ--------AQQ 492
++ P +PG RP F PGQQ GGR G P QQ Q
Sbjct: 534 GMVIPG---------IPGGRPGQFAAGF-PGQQ----GGR--GINPNQQLPPNAFGLGAQ 577
Query: 493 PIP---LMQPRMLPRGRIY-----RYPPGCNIPDVPVAGVPG--GMLPGPYDIGGMPFRD 542
+P L P +P G Y + VPG GM P ++ GM
Sbjct: 578 GLPIGALQGPGGMPNGLSYPQAIAQVQASFGRGGGGRGQVPGIQGMPPNLANVPGMRAGG 637
Query: 543 AAFSQ----PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
F+Q P Q G + P Q +L G++ + +
Sbjct: 638 QGFAQGRGIPPQQG-------DPKPNNQ-SLAGQDHWY---------------AFWKWTN 674
Query: 599 TEVLHLLESPEALKAKVAEAMEV 621
E+L L++ AL+AKV EA+ V
Sbjct: 675 AELLSLVDDDAALRAKVDEAINV 697
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 153/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 47 PSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKNLD +S+++ +ELF ++G ITS + RD
Sbjct: 223 DRQ----SKFEEM------KANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGE 272
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GF F E A+ A+ E+N K + LYV AQ+K ER L+
Sbjct: 273 TGKSRGFGFFYFLKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELR 323
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 257/625 (41%), Positives = 340/625 (54%), Gaps = 93/625 (14%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRS GY YVN+ +A RALD
Sbjct: 11 TSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF +NGK +RIM+S RDP++RKSG V
Sbjct: 71 TMNFDVINGKSVRIMWSQRDPSLRKSG--------------------------------V 98
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 99 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKEREAELGARAKE 157
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 158 FTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFERGEDAQKAVD 217
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ K+ YVG+AQKK ER+ ELK KFEQ ++ +++GLNLYVK LDD I D++
Sbjct: 218 ELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDDYIDDER 277
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNGK+V +KPLYVALA
Sbjct: 278 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALA 336
Query: 398 QRKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQ- 453
QRKEER+A L M R P P P F P Q
Sbjct: 337 QRKEERQAHLTNEHMHRTASVRAVPNPASKPYQPAPPSGYFMAALPQTQNSAACSPASQI 396
Query: 454 -QLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRI----- 507
QL P P + P V+P PG R + P M+P R+
Sbjct: 397 TQLRPS--PRWTAPSVRPHPFQNMPGAIRPAA-----PRPPFSTMRPASSQVSRVMSTQC 449
Query: 508 -----------------------------YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGM 538
++Y G P P + P
Sbjct: 450 IANTSAQTVGPRPAAAAAAATPAVHTALRFKYAAGVRNPQQHFRAQPQVTMQQP------ 503
Query: 539 PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
A Q S L +A+P+QQ+ +LGE L+PL+ A K+TGMLLEMD
Sbjct: 504 -----AIHVQGQEALTVSMLVSAAPQQQKQMLGERLFPLIQARRPTLAGKITGMLLEMDN 558
Query: 599 TEVLHLLESPEALKAKVAEAMEVLR 623
+E+LH+LESPE+L++KV EA+ VL+
Sbjct: 559 SELLHMLESPESLRSKVDEAVAVLQ 583
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 105/194 (54%), Gaps = 20/194 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++YV + ++D L DLF + G +SV+V D +S G+G+V++ +
Sbjct: 155 AKEF--TNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTD-ERGKSKGFGFVSFERGED 211
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DELN L+GK I R + I + N+++K LD
Sbjct: 212 AQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDD 271
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 272 YIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGKIVATKP 330
Query: 198 VFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 331 LYVALAQRKEERQA 344
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 245/553 (44%), Positives = 335/553 (60%), Gaps = 62/553 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ LYD F G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++R+SG GN+FIKNLD+SIDNKAL+DTFS+FGNILSCKV
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVV 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
D G S+G+GFV ++++ESA+ AI+K+NGML+ DK+VFV F + +R E F
Sbjct: 123 CDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVE 277
N++VKNL ++ D L + F +FG + S V+ D G SKC GF++F + D A +VE
Sbjct: 182 TNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVE 241
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
++ K+ + K+ Y G+AQKK ER ELK K+E+ +E +++G+NLYVKNLDDSI D+
Sbjct: 242 IMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEG 301
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E F +FG ITS KV+ D NG S+G GFV FS+ EEA+KA+TEMNG++ KPLYV LA
Sbjct: 302 LREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLA 361
Query: 398 QRKEERRARLQFSQM-RPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
QRKE+R+A LQ M R G RM + +G Q+ Q
Sbjct: 362 QRKEDRKAHLQQQYMQRVSTGIRMQAF------MGNQVV----------------NQNFQ 399
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ--PRMLP----------- 503
P P Y +P +Q GQ P+Q Q P+++ PR P
Sbjct: 400 P---PRYILPTMQ-GQ-------------PVQMFPQGTPMVRATPRWAPPNQRVQMPGMI 442
Query: 504 RGRIYRY--PPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANA 561
RGR+ + P P V +P ++ P MP ++ +S LANA
Sbjct: 443 RGRMAQQGGPQFRLTPSVRNVQIPSEVIQMPPQ---MPHQNQPAGDQAPETLTSSMLANA 499
Query: 562 SPEQQRTLLGENL 574
+P++Q+ +LGE L
Sbjct: 500 NPQEQKQMLGERL 512
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
GDA + T+L+V +L S + L + F Q G+VVS +V D +T S +G++++
Sbjct: 175 GDAAKHF-TNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEH 233
Query: 92 HEATRALDELNFTPLNGKP---------------IRIMYS-YRDPTIRKSGAGNIFIKNL 135
+A A++ ++ + GK ++ Y + I++ N+++KNL
Sbjct: 234 DQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNL 293
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D SID++ L + F FGNI S KV TD G+S+G+GFV F + E A A+ ++NG +
Sbjct: 294 DDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGG 353
Query: 196 KQVFVGPFLRKQERES 211
K ++VG RK++R++
Sbjct: 354 KPLYVGLAQRKEDRKA 369
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 252/574 (43%), Positives = 332/574 (57%), Gaps = 108/574 (18%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 53 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 112
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 113 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 172
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 173 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 232
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL T ++ +++F ++G ITS ++ RD + GKS+ FGFVNF + D AA +
Sbjct: 233 NFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAA 292
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K++ ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 293 VEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 352
Query: 336 DKLKELFSEFGTITSCKVMRDPNG------------------------------------ 359
+KL++LF FG ITS +VMRD G
Sbjct: 353 EKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVREETKKEAGGEDSAEK 412
Query: 360 ----------------ISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
+ + GF V FS +EASKA+TEMN +MV KPLYVALAQRK+
Sbjct: 413 TDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 402 ERRARLQFS----------QMRPPVGPRMP-MYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
R+++L+ S Q+ G P M P V GQQ F P + G
Sbjct: 473 VRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFI----PANAQRGGMA 528
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPG-----GRRSGTGPMQQAQQPIPLMQPRMLPRG 505
+ QQ PGM +P + G+ Q PG G R GP QQ
Sbjct: 529 FAQQ--PGM----VLPGMPGGRPGQYPGGFPQQGGRGLAGPNQQ---------------- 566
Query: 506 RIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMP 539
PP N + G+P G L GP GG+P
Sbjct: 567 ----LPP--NAFGLGAQGLPIGALQGP---GGIP 591
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 154/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
PT + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKNL+ +++++ +ELF ++G ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNE 271
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV F + A+ A+ ++N K + LYV AQ+K ER L+
Sbjct: 272 TGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELR 322
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/453 (49%), Positives = 296/453 (65%), Gaps = 24/453 (5%)
Query: 9 QAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
Q PV + P PA G N + SLY+GDL V +S L++ F+ G V+S
Sbjct: 29 QPPVGMG--PPPANMGYPPNA------TYSMASLYIGDLHGDVTESMLFEKFSMAGPVLS 80
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+RVCRD ++R SLGY YVN+ +A RALD +NF ++G+P+RIM+S RDP R++G G
Sbjct: 81 IRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFETIHGRPMRIMWSQRDPAARRAGNG 140
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
NIFIKNLD+ IDNK+++DTFS FGNILSCKVA D G SRGYGFV F+ EESA+ AI+K+
Sbjct: 141 NIFIKNLDRVIDNKSIYDTFSLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKV 200
Query: 189 NGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
NGMLL+ K+V+VG F + +R E ++ NV+VKN E ++ L K+F ++G IT
Sbjct: 201 NGMLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEIT 260
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMEL 304
S VM DADGK K FGFV + DPD A ++V+ LN K + D + V +AQKK ER +L
Sbjct: 261 SAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQKKSERTADL 320
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K K+E +E +++G+NLYVKN+D+ ++D+ L+ F+ FGTITS KVM D NG S+G
Sbjct: 321 KRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVDENGRSKGF 380
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYP 424
GFV F EEA+ A+TEMN KM+ SKPLYVALAQRKE+RRA+L M+ RM
Sbjct: 381 GFVCFEKPEEATAAVTEMNSKMMGSKPLYVALAQRKEDRRAQLASQYMQKLATLRMGQQT 440
Query: 425 PVAPGL------GQQLFY------GQGPPIIPP 445
PG+ GQQ F+ QG P+ P
Sbjct: 441 NGVPGMAPIYPQGQQGFFVPNPMAAQGRPVFQP 473
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 558 LANASPEQQRTLLGENLYPLVDQL--EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
LA A+P++Q+ LLGE +Y L+++L H +A K+TGM+LE+D E++ +L+ + ++KV
Sbjct: 608 LAQAAPQEQKQLLGERIYALIEKLFPSHKDAGKITGMMLEIDNAELIMMLQDGDLFRSKV 667
Query: 616 AEAMEVLRN 624
EA VL N
Sbjct: 668 EEANSVLTN 676
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/383 (55%), Positives = 281/383 (73%), Gaps = 5/383 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYV DL V + L+ F+ G V+SVRVCRD+ TRRSLGY YVN++ +A RALD
Sbjct: 11 SLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDT 70
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRI + RDP++RKSG GN+FIK LDKSIDNKAL+DTFS FGNI SCK+
Sbjct: 71 MNFDIIKGRPIRITWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGNISSCKIV 130
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
D G SRGYGFV F+ +E+A+ AI+K+NGMLLN K+VFVG F+ ++ER D +F
Sbjct: 131 CDEHG-SRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLDLGMRKF 189
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM-RDADGKSKCFGFVNFDDPDDAARSVE 277
NNVYVKNLSE T ++ L++IF +G I S VM D+ KSK FGFV+F++P+ A ++VE
Sbjct: 190 NNVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVE 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
ALNG K YVG+AQ K ER+ ELK KFE+ KE ++++G+NL+VKNLDD+I D +
Sbjct: 250 ALNGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVNLFVKNLDDNIDDKR 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F++FGTITS KVM + NG S+G GFV FS+ EEA+KA+ EMN K++ ++PLYVALA
Sbjct: 310 LRKEFAQFGTITSAKVMTE-NGRSKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYVALA 368
Query: 398 QRKEERRARLQFSQMRPPVGPRM 420
QRKE+R+A L M+ RM
Sbjct: 369 QRKEDRKAYLALLNMQRITSMRM 391
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD +++D +L F Q G + S +V + RS G+G+V +++ EAT
Sbjct: 290 RYQGVNLFVKNLDDNIDDKRLRKEFAQFGTITSAKVMTE--NGRSKGFGFVYFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + +P+ + + R
Sbjct: 348 KAIVEMNEKIIEARPLYVALAQR 370
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 251/621 (40%), Positives = 353/621 (56%), Gaps = 45/621 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVGDL + L+D F+++G V SVRVCRD +T SL YGYVNY + +A AL++
Sbjct: 103 ALYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAMTALEK 162
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + + KPIR+M+S RDP R+SG GN+F+KNL+ IDN L + FS FG+ILSCKVA
Sbjct: 163 MNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELFSKFGDILSCKVA 222
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
+ G SRGYGFVQF +ESA AI+ LN +Q+ V F++K ER + D ++ N
Sbjct: 223 RNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERSANNDD-KYTN 281
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + TE+ +K F +FG + S +M+ DG SK FGFV+F PD A ++ EA+N
Sbjct: 282 LYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKGFGFVSFKSPDSAKKAKEAMN 341
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G K YV +AQKK ER+ L+ E+ E K G N+Y+KN+ D + D+ L+E
Sbjct: 342 GIPLGSKSLYVARAQKKAERKQYLQLLHEEKRNEILTKSNGSNVYIKNISDRVDDETLRE 401
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
F EFG ITS K+MRD GIS+G GFV ++T +EA A++ M G M KPLYVA+AQRK
Sbjct: 402 RFDEFGNITSVKIMRDDKGISKGFGFVCYNTPDEAKCAVSSMRGVMFYDKPLYVAIAQRK 461
Query: 401 EERRARLQ--FSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPG 458
E+R+ARL+ F+++ VG P+ P P + Y P PQ G Q + P
Sbjct: 462 EDRKARLEQRFAELATMVGAASPVIPTGYPHV-----YFAHPSTHFPQ-GPSRQGFMYPP 515
Query: 459 MRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML--PRGR----IYRYPP 512
M + Q +QN P +QQ P+ PR RGR + +P
Sbjct: 516 M------GLGQEWRQNVFPSPHN-----IQQIHAPLMPNTPRQYRNNRGRMTGNMMTFPH 564
Query: 513 GCN-IPDVPVAGVPGGM----------LPGPYDIGGMPFRDAAFSQPMQT--GALASALA 559
N + A M +P G+ S P+ + S LA
Sbjct: 565 TVNYVSHAQTAKDFMSMSRQQFGHAKYIPADVMTSGLAIH---HSDPVSSVNDPFTSLLA 621
Query: 560 NASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
A P+QQR +LG LYPLV++ + A+K+TGMLL++D ++V+ L+ SP+ L AK+ E
Sbjct: 622 AAPPDQQRNMLGNRLYPLVERYHPELASKITGMLLDLDSSDVVLLICSPDMLSAKINECA 681
Query: 620 EVLRNVAQQQATGPSPTDRVA 640
++L+ QQA P D+ A
Sbjct: 682 QLLQG---QQAAKTKPEDQEA 699
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/408 (53%), Positives = 281/408 (68%), Gaps = 21/408 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIF+KNLD+SID+K L+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E A+ AI+K+NGM LND +VFVG F +++R++ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KNL E ++ L+ +FG FG S VM D GKSK FGFV+F+ +DA ++VE
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-----------GLNLYVK 327
+NGK + K+ YVG+AQKK ER+ ELK KF Q +K+ K E G+NLYVK
Sbjct: 251 MNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKHKIERVPQDRSVRCKGVNLYVK 309
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDD I D++L++ FS FGTITS KV + G S+G GFV FS+ EEA+KA+TEMNGK+V
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIV 368
Query: 388 VSKPLYVALAQRKEERRARLQFSQMR----PPVGPRMPMYPPVAPGLG 431
+KPLYVALAQRKEER+A L M+ GP P+ P P G
Sbjct: 369 ATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGPN-PVVSPFQPAQG 415
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 37/224 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ +L ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESG-KSKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPI---------------------------RIMYSYRDPTIRKSG 126
A +A++E+N LNGK I +I +D ++R G
Sbjct: 244 ARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKG 303
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+
Sbjct: 304 V-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVT 361
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
++NG ++ K ++V RK+ER++ +N Y++ ++ T+
Sbjct: 362 EMNGKIVATKPLYVALAQRKEERQA-----HLSNQYMQRMASTS 400
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA+A P+ Q+ +LGE L+ L+ + A K+TGMLLE+D E+ H+LESPE L K
Sbjct: 554 ASMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLESPECLHTK 613
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 614 VDEAIAVLQ 622
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/408 (53%), Positives = 281/408 (68%), Gaps = 21/408 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIF+KNLD+SID+K L+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E A+ AI+K+NGM LND +VFVG F +++R++ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KNL E ++ L+ +FG FG S VM D GKSK FGFV+F+ +DA ++VE
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-----------GLNLYVK 327
+NGK + K+ YVG+AQKK ER+ ELK KF Q +K+ K E G+NLYVK
Sbjct: 251 MNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKHKIERVPQDRSVRCKGVNLYVK 309
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDD I D++L++ FS FGTITS KV + G S+G GFV FS+ EEA+KA+TEMNGK+V
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIV 368
Query: 388 VSKPLYVALAQRKEERRARLQFSQMR----PPVGPRMPMYPPVAPGLG 431
+KPLYVALAQRKEER+A L M+ GP P+ P P G
Sbjct: 369 ATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGPN-PVVSPFQPAQG 415
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 37/224 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ +L ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESG-KSKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPI---------------------------RIMYSYRDPTIRKSG 126
A +A++E+N LNGK I +I +D ++R G
Sbjct: 244 ARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKG 303
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+
Sbjct: 304 V-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVT 361
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
++NG ++ K ++V RK+ER++ +N Y++ ++ T+
Sbjct: 362 EMNGKIVATKPLYVALAQRKEERQA-----HLSNQYMQRMASTS 400
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA+A P+ Q+ +LGE L+ L+ + A K+TGMLLE+D E+ H+LESPE L K
Sbjct: 553 ASMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLESPECLHTK 612
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 613 VDEAIAVLQ 621
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 250/567 (44%), Positives = 336/567 (59%), Gaps = 70/567 (12%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 155 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 214
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 215 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 273
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 274 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 333
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 334 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 393
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS K +EEA+KA+TEMNG++V +KP
Sbjct: 394 GIDDERLRKEFSPFGTITSAK------------------NSEEATKAVTEMNGRIVATKP 435
Query: 392 LYVALAQRKEERRARL------QFSQMRPPVGPRMPMYPPVAPG----------LGQQLF 435
LYVALAQRKEER+A L + + +R P + Y P P + +
Sbjct: 436 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 495
Query: 436 YGQGPPI----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQ 491
Y PP + P P + Q G RP+ F M PG RP R M+ A
Sbjct: 496 Y---PPSQIAQLRPSPRWTAQ-----GARPHPFQNM--PGAI--RPAAPRPPFSTMRPAS 543
Query: 492 QPIPLMQPR----------MLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFR 541
+P + M PR + VP G+ + P
Sbjct: 544 SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNTQP-- 601
Query: 542 DAAFSQPM-----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEM 596
QP Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+
Sbjct: 602 QVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEI 661
Query: 597 DQTEVLHLLESPEALKAKVAEAMEVLR 623
D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 662 DNSELLHMLESPESLRSKVDEAVAVLQ 688
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 156/290 (53%), Gaps = 38/290 (13%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 190 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 247
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 248 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 307
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 308 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 367
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS
Sbjct: 368 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA-------------- 413
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+ ++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 414 ----KNSEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 459
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 42/210 (20%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S + S G+G+V++ +
Sbjct: 277 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 333
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 334 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 393
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S K N E A A+ ++NG ++ K
Sbjct: 394 GIDDERLRKEFSPFGTITSAK------------------NSEEATKAVTEMNGRIVATKP 435
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 436 LYVALAQRKEERQA-----HLTNQYMQRMA 460
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 280/632 (44%), Positives = 364/632 (57%), Gaps = 94/632 (14%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+ RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVI--RVCRDVITRRSLGYAYVNFQQPADAERALDT 60
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + KPIRIM+S RDP++R+SG GN+FIKNLD++ NKA++DTFS FGNILSCKVA
Sbjct: 61 MNL--VRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRA--NKAIYDTFSAFGNILSCKVA 116
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD G S+GYGFV EE+A ++IDK+NGMLLN K+V+VG F+ ++E+E A F N
Sbjct: 117 TDEKGNSKGYGFVH--TEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQEEKAK--LFTN 172
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VYVKN +E ++ LK+ F +G IT VM DGKSK FGFV F+ + A +V+ALN
Sbjct: 173 VYVKNFTEDFDDEKLKEFFEPYGKITK--VMSKEDGKSKGFGFVAFETTEAAEAAVQALN 230
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK + K YV +AQKK ER+ ELK KFE+ LK+ +F G+NLYVKNLDD+I DD+L+
Sbjct: 231 GKG-EGKSLYVARAQKKAERQQELKRKFEE-LKQKRHEF-GVNLYVKNLDDTIDDDRLRI 287
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS +G ITS KV D G S+G GFV F+ EA+ A+TE+NG++V S LYVALAQRK
Sbjct: 288 AFSPYGNITSAKV--DEEGRSKGFGFVCFNPESEATCAVTELNGRVVGS--LYVALAQRK 343
Query: 401 EERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQG--PPIIPPQPGFGYQQQLVPG 458
EER+A L MR G RM LGQQ G P +P F + Q+
Sbjct: 344 EERKADLASQYMRHMTGMRMQQ-------LGQQPNAASGFFVPTLPSNQRF-FGSQVATQ 395
Query: 459 MR--PNYFV---------------------------------------PMVQPGQ----- 472
MR P + V P VQ
Sbjct: 396 MRNTPRWQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAGARGAQPQVQGTHAAAAA 455
Query: 473 -QNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPG 531
N R G R+ TG Q IP Q + R Y N+ + PV P
Sbjct: 456 ANNMRNTGARAITGQAAPNMQ-IPGAQIAGGAQQRTSNYKYTSNMRNPPVL---HQTQPI 511
Query: 532 PYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTG 591
P + G S+ + LA NA P++Q+ GE LYP+++ + + A K+TG
Sbjct: 512 PQQLQGKN------SEKLIASLLA----NAKPQEQKQ--GERLYPMIEHMHANLAGKITG 559
Query: 592 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
MLLE++ +E+LH+ EALKAKV EA+ VL+
Sbjct: 560 MLLEIENSELLHM--DQEALKAKVEEAVAVLQ 589
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R +LYV +LD +++D +L F+ G + S +V + RS G+G+V +N EA
Sbjct: 264 RHEFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVDEE---GRSKGFGFVCFNPESEA 320
Query: 95 TRALDELN 102
T A+ ELN
Sbjct: 321 TCAVTELN 328
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/438 (50%), Positives = 294/438 (67%), Gaps = 24/438 (5%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A AA PA+ +AN +SLYVGDL+ V ++QL++LF+ +G V S+RVC
Sbjct: 8 APAATTQPASTPLAN------------SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVC 55
Query: 73 RDLSTRRSLGYGYVNYNAA---HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RD TRRSLGY YVNYN+A A RA++ LN+ +NGKP+RIM+S+RDP+ RKSG GN
Sbjct: 56 RDAVTRRSLGYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGN 115
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLDK+ID KALHDTFS FG ILSCKVATD+ G S+GYGFV F+++ +A AI +N
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVN 175
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
+ K V+V PF ++ +R +T + NV+VKNL +D+L K+ E G ITS
Sbjct: 176 QKKIEGKIVYVAPFQKRADRPRA--RTLYTNVFVKNLPADIGDDELGKMATEHGEITSAV 233
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VM+D G SK FGF+NF D + AA+ VE LN ++ K Y G+AQKK ERE L+ K E
Sbjct: 234 VMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAE 293
Query: 310 QSLKETADKFEGLNLYVKNL-DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
+S +E K++ +NLYVKNL D+ + DD L+ELF+ GTITSCKVM+D +G S+G GFV
Sbjct: 294 ESKQERYLKYQSMNLYVKNLSDEEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVC 353
Query: 369 FSTAEEASK-ALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPP-- 425
F++ +EA++ +TEMNGKMV KPLYVALAQRK+ RRA + M+ +G PP
Sbjct: 354 FTSHDEATRPPVTEMNGKMVKGKPLYVALAQRKDVRRATQLEANMQARMGMGAMSRPPNP 413
Query: 426 ---VAPGLGQQLFYGQGP 440
++P G F+ GP
Sbjct: 414 MAGMSPYPGAMPFFAPGP 431
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 247/508 (48%), Positives = 315/508 (62%), Gaps = 49/508 (9%)
Query: 8 PQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
P V A P P N ++ + SLYVGDL VN+S L++ F+ G V+
Sbjct: 8 PAVAVPGAGAPQPGQNPTGSS--------YTMASLYVGDLHPDVNESILFEKFSAAGPVL 59
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRD +TR SLGY YVN+ +A RA+D +NF L+GKP+RIM+S RDP +R+SGA
Sbjct: 60 SIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGA 119
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GNIFIKNLDK IDNK+++DTFS FGNILSCKVA D G S+GYGFV F+ EE+A++AI K
Sbjct: 120 GNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQK 179
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLL K+VFVG F + +R +T ++ NVYVKN + ++ L+K+F ++G I
Sbjct: 180 VNGMLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTI 239
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREME 303
TS VM +DGKSK FGFV F +P++A +V+ALN + D + +V +AQKK ER E
Sbjct: 240 TSCDVM-TSDGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAE 298
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
LK K EQ E K++G+NLYVKNLD+S+ D+ LK+ F FG ITS KVM D NG S+G
Sbjct: 299 LKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKG 358
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMY 423
GFV F EEA+ A+TEMN KMV SKPLYVALAQRKE+RRA+L M+ RM
Sbjct: 359 FGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTN 418
Query: 424 PPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFV--PMVQP----GQQNQRP 477
P QQ PQPG P Y+V PM Q G Q RP
Sbjct: 419 VPGGGLYPQQ-----------PQPG------------PGYYVANPMQQQRNFGGPQMVRP 455
Query: 478 GGRRSGTGPMQQAQQPIPLMQPRMLPRG 505
GGR GP Q P+ M+ +G
Sbjct: 456 GGR---WGPQNQ----YPVQNQYMMAQG 476
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/397 (54%), Positives = 284/397 (71%), Gaps = 17/397 (4%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A R
Sbjct: 8 FPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILS
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F +QERE+ A
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEF-----GIITSTAVMRDADGKSKCFGFVNFDDP 269
F N+YVKNL E L+++F +F G + S VMRD G S+ FGFVNF+
Sbjct: 187 AMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKH 246
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE--GLNLYVK 327
++A ++V +NGK+ + YVG+AQK+ ER+ ELK KFEQ ++ +++ G+NLYVK
Sbjct: 247 EEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGVNLYVK 306
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDDSI+D+KL++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 307 NLDDSINDEKLRKEFSPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIV 365
Query: 388 VSKPLYVALAQRKEERRARL------QFSQMRPPVGP 418
+KPLYVALAQRKEER+A L + S +R GP
Sbjct: 366 GTKPLYVALAQRKEERKAILTNQYMQRLSTVRALGGP 402
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 36/220 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNY 88
AR T++YV +L + +++ L +LF+Q G+++SV+V RD + S G+G+VN+
Sbjct: 185 ARAMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRD-DSGHSRGFGFVNF 243
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAG 128
EA +A+ ++N + G R++Y R D R G
Sbjct: 244 EKHEEAQKAVMDMNGKEVRG---RLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRG 300
Query: 129 -NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
N+++KNLD SI+++ L FS +G I S KV T+ G S+G+GFV F + E A A+ +
Sbjct: 301 VNLYVKNLDDSINDEKLRKEFSPYGMITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTE 359
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
+NG ++ K ++V RK+ER K N Y++ LS
Sbjct: 360 MNGRIVGTKPLYVALAQRKEER-----KAILTNQYMQRLS 394
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 18/108 (16%)
Query: 508 YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQR 567
++ P +P VP P +PG +P+ AS LA A +Q+
Sbjct: 407 FQQPANYFLPAVPQVQEPAVCIPG--------------KEPLT----ASMLAAAPLHEQK 448
Query: 568 TLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AKV
Sbjct: 449 QMIGERLYPLIYDVHTQLAGKITGMLLEIDNSELLLMLESPESLNAKV 496
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/456 (49%), Positives = 312/456 (68%), Gaps = 22/456 (4%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
S SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVN++ +A R
Sbjct: 25 LASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAER 84
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN++ + G+ RIM+S RDP++RK GNIFIKNLD SID+KALHDTFS FGNILS
Sbjct: 85 ALETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFGNILS 144
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+A D G S+GYGFV ++ E+A+SAI +NGMLLND++VFVG + ++ERES ++
Sbjct: 145 CKIAHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERESKLGES 204
Query: 217 R--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
R F N+YVKN+ T+++L ++FG++G ITS + RD DG SK FGFVNF+ DA
Sbjct: 205 RVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQN 264
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ L+ K F ++ YV +AQKK ERE EL+ ++E++ E K++G+NLYVKNLDD +
Sbjct: 265 AVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMD 324
Query: 335 DDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DD+L++ FS +G ITS K+MRD ISRG GFV F++ E+A++A+TEMNG+++ SKP+Y
Sbjct: 325 DDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSKPIY 384
Query: 394 VALAQRKEERRARL--QFSQMRPPVGPRMP--MYPPV--------APGLGQQLFYGQGPP 441
VA+AQRKE RR++L Q +Q MP ++PP A + +F G P
Sbjct: 385 VAIAQRKEVRRSQLEIQMAQRNQLKQAMMPPSVFPPTMYGPPAGMAAAASRSVFQGAPMP 444
Query: 442 IIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRP 477
P Q G+ Q+L P +P +P + RP
Sbjct: 445 SFPAQ-GYPATQRLSPPPQP------AKPAESAVRP 473
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/386 (54%), Positives = 277/386 (71%), Gaps = 13/386 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A++AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG++ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA- 368
Query: 399 RKEERRARL------QFSQMRPPVGP 418
E R+A L + S MR GP
Sbjct: 369 --EGRKAILTNQYMQRLSTMRALGGP 392
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 114/214 (53%), Gaps = 34/214 (15%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ +L DLF+Q G+++SV+V RD+S S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSG-HSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVVNMNGREVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V + K N Y++ LS
Sbjct: 359 GTKPLYVA--------LAEGRKAILTNQYMQRLS 384
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 523 GVPGGMLPGPYDIGG--MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQ 580
PG P D+ + ++ A P Q AS LA A +Q+ ++GE L+PLV
Sbjct: 524 ATPGAPHPASGDVSSCHVQVQEPAVHVPGQEPLTASMLAAAPLHEQKQMIGERLFPLVYN 583
Query: 581 LEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
+ A K+TGMLLE+D +E+L +LESPE+L AKV
Sbjct: 584 VHAHLAGKITGMLLEIDNSELLLMLESPESLNAKV 618
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/459 (45%), Positives = 292/459 (63%), Gaps = 62/459 (13%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ A A P+P + A+N S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVAAAQAEAPTPTSAAPAHNQN--------SASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ ++++ +++F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + A+ +V+ALN F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KVMRD
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAE 371
Query: 362 RGS--------------------------------------------------GF--VAF 369
R GF V F
Sbjct: 372 RSETPGDEKKEEAKEESEKTEESNEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCF 431
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
S +EA+KA+TEMN KM+ KPLYVALAQRK+ R+ +L+
Sbjct: 432 SNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLE 470
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 160/341 (46%), Gaps = 75/341 (21%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A A+
Sbjct: 137 NVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKH 195
Query: 101 LNFTPLNGKPIRIMYSYRDPTIR--------KSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+N LN K ++ + P K+ NI++KN+D + ++ + F G
Sbjct: 196 VNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG 253
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
+I S +A D G+SRG+GFV + E+A +A+D LN ++++VG +K ERE
Sbjct: 254 DITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEE 313
Query: 213 ADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD------- 253
K +++ N+Y+KNL++ ++ L+ +F FG ITS VMRD
Sbjct: 314 LRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERS 373
Query: 254 ------------------------AD---------------------GKSKCFGFVNFDD 268
AD GKSK FGFV F +
Sbjct: 374 ETPGDEKKEEAKEESEKTEESNEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSN 433
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
PD+A ++V +N K + K YV AQ+K R+ +L+ +
Sbjct: 434 PDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 474
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 49/66 (74%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
SAL+ A+P QQ+ +LGE LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 658 SALSGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTSDEAALRAKV 717
Query: 616 AEAMEV 621
EAM V
Sbjct: 718 EEAMSV 723
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/373 (54%), Positives = 274/373 (73%), Gaps = 10/373 (2%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+ F+ G ++S+RVCRD++TRRSL Y Y+N+ +A RALD +NF + G+PIRIM+
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV D G SRG+GFV F
Sbjct: 62 SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHF 120
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTED 233
+ ++A+ AI +NGMLLND++VFVG F ++ERE+ A F N+YVKNL E
Sbjct: 121 ETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGARVMEFTNIYVKNLQVDVDER 180
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
L+ +F +FG + S VMRD+ G S+ FGFVNF+ ++A ++V +NGK+ + YVG+
Sbjct: 181 GLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGR 240
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQK+ ER+ ELK +FEQ ++ ++++G+NLYVKNLDDSI+D+KL++ FS +G ITS KV
Sbjct: 241 AQKRLERQNELKRRFEQMKQDRLNRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSAKV 300
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL------ 407
M + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L
Sbjct: 301 MTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 359
Query: 408 QFSQMRPPVGPRM 420
+ S +R GP M
Sbjct: 360 RLSTVRALGGPLM 372
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S+ S G+G+VN+ E
Sbjct: 160 ARVMEFTNIYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRD-SSGHSRGFGFVNFEKHEE 218
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y R D R G N+++K
Sbjct: 219 AQKAVVHMNGKEVSG---RLLYVGRAQKRLERQNELKRRFEQMKQDRLNRYQGV-NLYVK 274
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SI+++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 275 NLDDSINDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 333
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 334 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 362
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 41/53 (77%)
Query: 571 GENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
GE LYPL+ + H A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL+
Sbjct: 503 GERLYPLIRDVHHQLAGKITGMLLEIDNSELLLMLESPESLHAKIEEAVAVLQ 555
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 251/642 (39%), Positives = 355/642 (55%), Gaps = 104/642 (16%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRRS Y YVN+ +A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++R+SG
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSG------------------------------ 97
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
V D G S+GYGFV F+ E+A+ AI+K+NG LLND++VFVG F ++ERE+ A
Sbjct: 98 --VVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 154
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 155 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 214
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 215 AVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 274
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 275 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Query: 395 ALAQRKEERRARLQFSQMR----------PPVGPRMPMYP-----PVAPGLGQQLFYGQG 439
ALAQRKEER+A L M+ P + P P P P + Y
Sbjct: 334 ALAQRKEERQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYPP 393
Query: 440 PPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQ-QAQQPIPLMQ 498
I +P + Q G RP+ F QN +PGG R + +P
Sbjct: 394 SQIAQLRPSPCWTAQ---GARPHPF--------QN-KPGGIRPAAPRLPFSTMRPTSSQV 441
Query: 499 PRMLPRGRI-----------------------------YRYPPGCNIPDVPVAGVPGGML 529
PR++ R+ Y+Y G P + P
Sbjct: 442 PRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHLNAQP---- 497
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
+ + +A Q AS LA+A P++Q+ +LGE L+P + + A K+
Sbjct: 498 -------QVTMQQSAVHVQGQETLTASMLASAPPQEQKQMLGERLFPPIQAMHPTLAGKI 550
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TGMLLE+D +E+LH+LESP++L++KV EA+ VL+ ++AT
Sbjct: 551 TGMLLEIDNSELLHMLESPQSLRSKVDEAVAVLQAHQAKEAT 592
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/500 (44%), Positives = 308/500 (61%), Gaps = 68/500 (13%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ P A P+P T A Q S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVPAASGDAPTPTT-------AAQQAHQ-NSASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ T++D +++F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + AA +V+ LN +F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM------- 354
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KV+
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKK 371
Query: 355 ---------------------------RDPNGISRGSG-------------------FVA 368
+ NG +G FV
Sbjct: 372 DEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVC 431
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVGPRMPMYPPVA 427
FS +EA+KA+TEMN KM+ KPLYVALAQRK+ R+ +L+ + Q R + RM
Sbjct: 432 FSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQARNQL--RMQQQQQQQ 489
Query: 428 PGLGQQLFY--GQGPPIIPP 445
G Q+F GQ P + PP
Sbjct: 490 FGGIPQMFIAPGQQPMMYPP 509
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 48/66 (72%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S L+ A+P QQ+ +LGE LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKV 712
Query: 616 AEAMEV 621
EAM V
Sbjct: 713 DEAMSV 718
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 249/611 (40%), Positives = 353/611 (57%), Gaps = 38/611 (6%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V+ SLYVGDL SV + LYD F + + SVR+C+D ST RSL YGY N+ + +A A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLA 81
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++ N + LNGK IR+M+S R+P R++G GN+F+KNL +SI N L D F FGNI+SC
Sbjct: 82 IEKKNHSLLNGKMIRVMWSVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVAT G+SRGYGFVQF+ E++A +AI+KLN + K+++VG F++K +R +K
Sbjct: 142 KVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAKAEEK-- 199
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ NVY+KNL ED L++ F EFG I S A+ +D +G K + FVNFD P+DA + E
Sbjct: 200 YTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAE 259
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG +F K YVG+AQKK ERE L+ +F++ +E K + N+YVKN++ +++++
Sbjct: 260 TMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINVGVTEEE 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+ GTITS K+M D G S+G GFV FST EEA A+ +GKM KPLYVA A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATA 379
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
Q+KE+R+ +LQ G PG L+Y PG Y Q P
Sbjct: 380 QKKEDRKMQLQVQFGNCVEGGGSSSSASFIPGTYAPLYYTN------THPGMVY-QSYPP 432
Query: 458 GMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIP 517
+ + P Q + T P P + Q R +G++ R +
Sbjct: 433 TWKSANMISSSYPNSQ--------ALTYPSVVGNAPRKIKQNR---KGKLDRNA----VS 477
Query: 518 DVPVAGVPGGMLPGPYDIGGMPF-----RDAAFSQPMQTGALASALANASPEQQRTLLGE 572
VP MLP D R +P+Q + + ++ LLGE
Sbjct: 478 YVPNVYQSTQMLPLSRDFSNQQLNRTYGRGKEMKKPIQQRQSETIV------MEKQLLGE 531
Query: 573 NLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
LYPLV++LE A K+TGMLLEMD++E+L LL+SP+ L +V EA EVL++ A+ TG
Sbjct: 532 LLYPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPQELAVRVEEAFEVLKS-AKTNVTG 590
Query: 633 PSP--TDRVAS 641
P+ +D +AS
Sbjct: 591 PNTLRSDFLAS 601
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 160/290 (55%), Gaps = 15/290 (5%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L S+ ++ L D+F + G +VS +V +S GYG+V +
Sbjct: 105 DARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCKVA-TFEDGKSRGYGFVQFEQED 163
Query: 93 EATRALDELNFTPLNGKPIRI--MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A A+++LN T + GK I + D + N+++KNLD ++ L + FS
Sbjct: 164 AAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAKAEEKYTNVYMKNLDADVNEDLLREKFSE 223
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG I+S +A D G +GY FV FD E A+ A + +NG K ++VG +K ERE
Sbjct: 224 FGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAETMNGTRFGSKCLYVGRAQKKAERE 283
Query: 211 STAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
K + +N+YVKN++ TE++L+K F + G ITST +M D GKS
Sbjct: 284 QLLREQFKEKHEEQMMKAKVSNIYVKNINVGVTEEELRKHFSQCGTITSTKLMCDEKGKS 343
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K FGFV F P++A +V+ +GK F K YV AQKK +R+M+L+ +F
Sbjct: 344 KGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATAQKKEDRKMQLQVQF 393
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 247/523 (47%), Positives = 311/523 (59%), Gaps = 73/523 (13%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE--- 93
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADGKS 88
Query: 94 -------------ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
A RA+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK ID
Sbjct: 89 FFQFMSFLTFLITAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVID 148
Query: 141 NKALHDTFSTFGNILSCK-----------VATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
NK+++DTFS FGNILSCK VA D G S+GYGFV F+ EE+A++AI K+N
Sbjct: 149 NKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFETEEAAQNAIQKVN 208
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLL K+VFVG F + +R +T +F NVYVKN + ++ L+K+F ++G ITS
Sbjct: 209 GMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGDHYNKETLEKLFAKYGAITS 268
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMELK 305
VM +DGKSK FGFV F P++A +V+ALN D D + +V +AQKK ER ELK
Sbjct: 269 CDVM-TSDGKSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKLHVCRAQKKSERHAELK 327
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK------------- 352
K EQ E K++G+NLYVKNLD+S+ D+ LK+ F FG ITS K
Sbjct: 328 KKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVGLVPLEFFISLF 387
Query: 353 -VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQ 411
VM D NG S+G GFV F EEA+ A+TEMN KMV SKPLYVALAQRKE+RRA+L
Sbjct: 388 QVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQY 447
Query: 412 MRPPVGPRMP-------MYPPVAPGLG--------QQLFYGQGPPIIPPQPGFGYQQQLV 456
M+ RM MY P G G QQ + GP I P G QQ
Sbjct: 448 MQRLASMRMHSNVPGGGMYNPAQTGPGYYVANPMQQQRNFAGGPQIARPGGGRWGQQNQY 507
Query: 457 PGMRPNYFV---PMVQPGQ----QNQRPGGRRSGTGPMQQAQQ 492
P M+ Y + P V P + QNQ+ G R GP QQ Q
Sbjct: 508 P-MQNQYMMAQGPGVYPNRMGRPQNQQGGPR----GPPQQYSQ 545
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/394 (51%), Positives = 274/394 (69%), Gaps = 4/394 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V +S L++ F+ G V+S+RVCRD ++R SLGY YVN+ +A RALD
Sbjct: 56 SLYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 115
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF ++G+P+RIM+S RDP R++G GNIFIKNLD+ IDNK+++DTFS FGNILSCKVA
Sbjct: 116 MNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVA 175
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
TD G S+GYGFV F+ E SA +AI+K+NGMLL+DK+VFVG F + +R E ++
Sbjct: 176 TDEEGNSKGYGFVHFETEASALTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGLKY 235
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV++KN + E L ++F ++G ITS VM D GK K FGFV F DPD A ++V+
Sbjct: 236 TNVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDT 295
Query: 279 LNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LN + D + V +AQKK ER ELK K+E +E +++G+NLYVKN+++ ++DD
Sbjct: 296 LNESTLEGTDLKLSVCRAQKKSERTAELKRKYEALKQERVQRYQGVNLYVKNIEEEMTDD 355
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+E F+ FG+ITS KVM D NG S+G GFV F EEA+ A+TEMN KM+ +KPLYVAL
Sbjct: 356 GLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVAL 415
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGL 430
AQRKE+RRA+L M+ RM PG+
Sbjct: 416 AQRKEDRRAQLASQYMQRLATLRMGQQTNGVPGM 449
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 558 LANASPEQQRTLLGENLYPLVDQL--EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
LA A+P++Q+ LLGE +Y L++++ H A K+TGM+LE+D E++ +L+ + ++KV
Sbjct: 647 LAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDEDLFRSKV 706
Query: 616 AEAMEVLRNVAQQQATGPSPT 636
EA VL N AQ+ A GP+ T
Sbjct: 707 EEAFTVLSN-AQKNANGPAAT 726
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 256/589 (43%), Positives = 343/589 (58%), Gaps = 86/589 (14%)
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RA+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK IDNK+++DTFS FGNIL
Sbjct: 25 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNIL 84
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA D G S+GYGFV F+ EE+A++AI K+NGMLL K+VFVG F + +R +
Sbjct: 85 SCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGE 144
Query: 216 T--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
T +F NVYVKN + ++ L+K+F +FG ITS VM +GKSK FGFV F +P++A
Sbjct: 145 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAE 203
Query: 274 RSVEALNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
+V+AL+ + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD+
Sbjct: 204 TAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDE 263
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
++ DD LK+ F +G ITS KVM D NG S+G GFV F EEA+ A+TEMN KMV SKP
Sbjct: 264 TVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKP 323
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPRM-------PMYPPVAPGLG--------QQLFY 436
LYVA+AQRKE+RRA+L M+ RM MY P PG G QQ +
Sbjct: 324 LYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNF 383
Query: 437 GQGPPIIPPQPGFGYQQQL----------VPGMRPNYFVPMVQPGQQNQRPGGRRSGTGP 486
G ++ P +G Q Q PG+ N M +P QNQ+ G R GP
Sbjct: 384 AGGQQMVRPGGRWGMQNQYPVQNQYMMAQGPGVYQNR---MGRP--QNQQGGPR----GP 434
Query: 487 MQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML---------------PG 531
QQ Q + G + PP P V VP P
Sbjct: 435 PQQYNQ--------VAQGGVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQ 486
Query: 532 PYD----------IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQL 581
PY IGG +P+ + LA+ A+P++Q+ LLGE +Y L+++L
Sbjct: 487 PYQAYQQRPQGIVIGG--------QEPLTSAMLAA----AAPQEQKQLLGERIYALIEKL 534
Query: 582 E--HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
H +A K+TGM+LE+D +E++ +L+ E ++KV EA VL + +Q
Sbjct: 535 YPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSAQKQ 583
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 157/298 (52%), Gaps = 22/298 (7%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD +++ +YD F+ G ++S +V D S GYG+V++ A
Sbjct: 52 RRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAA 110
Query: 95 TRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTF 148
A+ ++N L GK + + + R R+ G N+++KN + + L F
Sbjct: 111 QNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLF 170
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLRK 206
+ FGNI SC+V T G+S+G+GFV F N E A++A+ L+ + D ++ V +K
Sbjct: 171 AKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKK 229
Query: 207 QERESTADKTRFN------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
ER + K N+YVKNL ET +D LKK F +G ITS VM D
Sbjct: 230 SERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE 289
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+G+SK FGFV F+ P++A +V +N K K YV AQ+K +R +L ++ Q L
Sbjct: 290 NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 347
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 231/594 (38%), Positives = 341/594 (57%), Gaps = 42/594 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN++ L + F+ +G+V+S+RVCRD TRRSLGY YVN+ +A +AL+
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALET 76
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF ++G+PIRIM+S R P+ + AGN+F+KNL+ S+++KAL++ FS FGNI+SCK+A
Sbjct: 77 MNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLA 136
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D +S+GYGFVQF+ EE+A+ AID NG++ K+++VG F + ER A +T F
Sbjct: 137 VDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCF 196
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV+VKN ++ ++ L+++F +FG I S AV D DGK FGFV F++PDDA ++V+
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 279 LNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ D++ YV + QKK ER EL K++ E A ++EG NLY+KNLDD+I DD
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDD 316
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+ F E+G + S KVMR +G S+G GFV F +EA KA+T M GKMV +KPLYV++
Sbjct: 317 MLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSM 376
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRKE+R+A + M+ RM A G + Y ++ P + L
Sbjct: 377 AQRKEDRKAFIASQYMQRIASIRMQ-----ATSFGSGMTYMSDSTVVQPLFACYGRGTLQ 431
Query: 457 PGMRPNYFVPMVQPGQQNQRPGG-------RRSGTGPMQQAQQPI----PLMQPRMLPRG 505
M + V + PGQ + G +R G M QQ + +MQ RG
Sbjct: 432 RNMSNDVAVATMVPGQHSWLQMGDIDKSQTQRMAVGAMVYGQQNVRSQYAIMQSDGDCRG 491
Query: 506 RIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALA-SALANASPE 564
+ P PY FR + Q L L+ + +
Sbjct: 492 QTEN--------------------PAPYSQTFSEFRGYMAPRVGQVEPLTPHILSQLTVQ 531
Query: 565 QQRTLLGENLYPLVDQLEHD-NAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 617
+Q+ ++ E + PLV ++ +A K+ GMLLEMD E+L +L + L++++ E
Sbjct: 532 KQKQVIAERICPLVPRIYKGPDANKIMGMLLEMDNAELLMMLNNEGLLRSRINE 585
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A+++ +LY+ +LD +++D L F + G V+S +V R RS G+G+V ++ E
Sbjct: 296 AKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRS-DDGRSKGFGFVCFDKPDE 354
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A +A+ + + KP+ + + R
Sbjct: 355 AVKAMTAMKGKMVCTKPLYVSMAQR 379
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 254/604 (42%), Positives = 344/604 (56%), Gaps = 59/604 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ + D+L
Sbjct: 251 MNGKEVSGRLLYAGRAQKRMERQNELKRRFEQ----------------------MKQDRL 288
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ G C P G + S A+ A+TEMNG++V +KPLYVALAQ
Sbjct: 289 RRYQLSRGP-AQCWAW--PVGRREAAQPQEPSFPTPAALAVTEMNGRIVGTKPLYVALAQ 345
Query: 399 RKEERRARL------QFSQMR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 444
RKEER+A L + S MR P +G P P V Q +YG G P+ P
Sbjct: 346 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 404
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP---RM 501
QP + Q RP+ + P + ++QA +P P R+
Sbjct: 405 TQPAPRWTSQ---PPRPS----CASMVRPPVVPRRPLAPISSVRQASTQVPRTVPHTQRV 457
Query: 502 LPRGRIYRYP--PGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALA 559
G P GC P P+ +P P + + ++ A P Q AS LA
Sbjct: 458 ANIGTQTTGPGGVGCCTPGRPL--LPYKCSPAAHSTYRV--QEPAVHIPGQEPLTASMLA 513
Query: 560 NASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK+ EA+
Sbjct: 514 AAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAV 573
Query: 620 EVLR 623
VL+
Sbjct: 574 AVLQ 577
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 159/296 (53%), Gaps = 22/296 (7%)
Query: 125 SGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEE 179
SG+G ++++ +L + L++ FS G ILS +V D + +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ A+D +N +L + + + +R+ K+ N+++KNL ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG I S V D G S+ FGFV+F+ + A +++ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
RE EL A E N+YVKNL + + L++LFS+FG + S KVMRD +G
Sbjct: 179 REAELG----------ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
SR GFV F EEA KA+ MNGK V + LY AQ++ ER+ L+ F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELKRRFEQMK 284
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 17/199 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF-G 152
A +A+ +N ++G R++Y+ R ++ N + ++ ++ S
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGR--AQKRMERQNELKRRFEQMKQDRLRRYQLSRGPA 298
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
+ V Q + F A A+ ++NG ++ K ++V RK+ER
Sbjct: 299 QCWAWPVGRREAAQPQEPSF-----PTPAALAVTEMNGRIVGTKPLYVALAQRKEER--- 350
Query: 213 ADKTRFNNVYVKNLSETTT 231
K N Y++ LS T
Sbjct: 351 --KAILTNQYMQRLSTMRT 367
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/320 (57%), Positives = 244/320 (76%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 119
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTFS FGNILSCK
Sbjct: 120 EDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCK 179
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D LG S+GYGFV ++ E+A AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 180 VAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKA 239
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KN+ E+ ++++ K+F +G + S + RD +GKS+ FGFVNF + AA++V
Sbjct: 240 NFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAV 299
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K+F K+ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D + DD
Sbjct: 300 EELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDD 359
Query: 337 KLKELFSEFGTITSCKVMRD 356
KL+ELFS +GTITS KVMRD
Sbjct: 360 KLRELFSSYGTITSAKVMRD 379
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 158/290 (54%), Gaps = 15/290 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 53 PSTAAQHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 112
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN + + + +R+ KT NV++KNL L
Sbjct: 113 ADGERALEDLNYTSIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 168
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F +FG I S V +D G SK +GFV+++ + A ++++++NG +DK+ +VG K
Sbjct: 169 FSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKR 228
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ +L+ E F N+Y+KN+D+S+SD++ +LF +G + S + RD N
Sbjct: 229 DRQSKLE--------EMKANF--TNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDEN 278
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV F++ E A+KA+ E+N K K LYV AQ+K ER L+
Sbjct: 279 GKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELR 328
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 152/313 (48%), Gaps = 56/313 (17%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG 417
G S+G GFV FS +EASKA++EMN KMV KPLYVALAQRK+ RR +L+ S Q R +
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVRRNQLEASIQARNTLR 499
Query: 418 PRMPMYPPVAP-GLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQR 476
+ P G Q + G +PP G Q+ + +P +P +Q G+ Q
Sbjct: 500 QQQQAAAAGMPQGYIQPTVFYPGQQFLPP----GAQRGMPFAGQPGMVIPGMQGGR-GQF 554
Query: 477 PGGRRSGTGPMQQAQQ---------PIPLMQ-----------PRMLPR--GRIYR----- 509
PGG G + Q QQ +P +Q P+ L + G++ R
Sbjct: 555 PGGFPQGGRGIPQGQQLPPNFGLPGQMPFIQNPALVNGMYNNPQALAQMQGQMGRGAGGR 614
Query: 510 --------YPPGCNI-------PDVPVAGVPGGM--LPGPYDIGGMPFRDAAFSQP---- 548
PP P+ P G GGM +PG G +P + P
Sbjct: 615 GQMQGMQGMPPNMQGMGGMRGGPNFPQGGR-GGMQNIPGGQGAGRIPPQGRGQMIPNREE 673
Query: 549 MQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 608
+ T + LA+ QQ+ +LGE +YP + Q++ + A K+TGMLLEMD +E+L L++
Sbjct: 674 INTPSSLHNLASLPQSQQKQILGEAIYPKIQQIQPELAGKITGMLLEMDNSELLSLVDDD 733
Query: 609 EALKAKVAEAMEV 621
AL++KV EA+ V
Sbjct: 734 AALRSKVDEALRV 746
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 182/320 (56%), Positives = 249/320 (77%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 122
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 123 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 182
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 183 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 242
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ NVYVKN++ TE++ +++F ++G +TS+ + RD +GKS+ FGFVNF D AA++V
Sbjct: 243 NYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAV 302
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F +E YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D I DD
Sbjct: 303 EELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDD 362
Query: 337 KLKELFSEFGTITSCKVMRD 356
KL+++FSEFG ITS KVMRD
Sbjct: 363 KLRQMFSEFGPITSAKVMRD 382
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 161/285 (56%), Gaps = 15/285 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V +++ + A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 122
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 178
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D +G SK +GFV+++ + AA++++ +NG ++K+ YVG K +R+
Sbjct: 179 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ---- 234
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN++ +++++ +ELFS++G +TS + RD G SRG G
Sbjct: 235 SKFEEM------KANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFG 288
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
FV FST + A+KA+ E+NGK + LYV AQ+K ER L+ S
Sbjct: 289 FVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKS 333
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 551 TGALASALANAS-PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
T L S LA S P+QQ+ +LGENL+P + L+ + A K+TGMLLEMD E+++LLE
Sbjct: 680 TSLLQSQLAATSNPQQQKQILGENLFPKIQALQPELAGKITGMLLEMDNNELVNLLEDET 739
Query: 610 ALKAKVAEAMEVLRN-VAQQQATG 632
AL AKV EAM V V QQA G
Sbjct: 740 ALVAKVNEAMAVYDEYVKSQQAAG 763
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/361 (53%), Positives = 257/361 (71%), Gaps = 3/361 (0%)
Query: 19 SPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR 78
+P + N+ A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TR
Sbjct: 31 TPEVTAVENSTPASAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR 90
Query: 79 RSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKS 138
RSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +
Sbjct: 91 RSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSA 150
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+V
Sbjct: 151 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 210
Query: 199 FVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
FVG + K++R+S + K F NVY+KNL +D+ +K+F +FG ITS + RD +G
Sbjct: 211 FVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEG 270
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
KS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A
Sbjct: 271 KSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKA 330
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
K++G+NLYVKNL D I D+KL+ELF +GTITS KVMRD N + R S + +EA+
Sbjct: 331 SKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTN-VERESSPESAGKEKEAN 389
Query: 377 K 377
K
Sbjct: 390 K 390
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 225/663 (33%), Positives = 324/663 (48%), Gaps = 125/663 (18%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 135 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAA 193
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
A+ +N LN K + + + S +D + K+ N++IKNLD ID+ F
Sbjct: 194 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMF 253
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG I S ++ D G+SRG+GFV F ESA++A++++N + ++++VG +K E
Sbjct: 254 EKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHE 313
Query: 209 RES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE A K + N+YVKNL++ ++ L+++FG +G ITS VMRD +
Sbjct: 314 REEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNV 373
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
+ + P+ A + EA K +DKE + + + E + E+ KE
Sbjct: 374 ERES-------SPESAGKEKEA---NKENDKEATPEAEKAEEKAEEKPAESSEEKDKEAK 423
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
SD K P G S+G GFV FS+ +EAS
Sbjct: 424 K----------------SDKK-------------------PFGKSKGFGFVCFSSPDEAS 448
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG----------PRMPMYPP 425
KA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R + P+ M P
Sbjct: 449 KAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPA 508
Query: 426 VAPGLGQQLFY--GQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSG 483
V G GQQ F GQ PPQPG +PG RP + P PGQQ GGR G
Sbjct: 509 VFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPGGRPGQY-PGPFPGQQ----GGR--G 558
Query: 484 TGPMQQA----QQPIPL-MQ-PRMLPRGRIY------RYPPGC----NIPDVPVA----- 522
GP QQ Q IP+ MQ P +P G Y ++ G +P +P+
Sbjct: 559 MGPNQQIPPNFAQGIPMGMQGPGAIPNGMGYPQMAQVQFGRGAGGRGQVPGMPMGQGMRG 618
Query: 523 --------GVP---GGMLPGPYDIGGMPFRDAAFSQPMQT---GALASALANASPEQQRT 568
GVP G + PG GG AA + P + G A L A P QQ+
Sbjct: 619 GPGYGQGRGVPVQQGQIRPGQ---GGRGQNAAAPAGPQEGAAGGVNAQTLGAAPPAQQKQ 675
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
+LGE LYP + + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V +
Sbjct: 676 MLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDEEALRAKVDEALSVYDEYMKN 735
Query: 629 QAT 631
+ T
Sbjct: 736 KGT 738
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 154/283 (54%), Gaps = 15/283 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N + A+
Sbjct: 51 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 110
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+ LN L+ K + +R+ KT NV++KNL L F FG I
Sbjct: 111 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 166
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K +R+
Sbjct: 167 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ---- 222
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+Y+KNLD I DD+ +++F +FG ITS + RD G SRG G
Sbjct: 223 SKFEEM------KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFG 276
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
FV FST E A A+ EMN K + S+ LYV AQ+K ER L+
Sbjct: 277 FVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 319
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 225/461 (48%), Positives = 303/461 (65%), Gaps = 42/461 (9%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F S SLY+GDL VN+ L+++FN +G V S+RVCRD TRRSLGY YVNY+ +A R
Sbjct: 6 FSSASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAER 65
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NFT + GKP RIM+S RDP++R+SG GNIF+KNL + IDNK L+DTFS FGNILS
Sbjct: 66 ALDSMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILS 125
Query: 157 CKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
CKV TD + G S+GYG+V ++ E+A SAI+KL+GML++ K+V VG F+R+ R AD
Sbjct: 126 CKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRRDNRPGQADW 185
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
T NV++KN+ TED L++ F FG + S A ++ G S FGFVNF + AA +
Sbjct: 186 T---NVFIKNIPFEWTEDKLREEFEGFGEVVS-AKPKEVQG-SLGFGFVNFATHEAAAAA 240
Query: 276 VEALNGKKFDDKE--------WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
V+ +N K+F E +VG+AQKK ERE EL+ K+E + KF+G+NLYVK
Sbjct: 241 VKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVK 300
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKM 386
NLDD+++DD L++ FS GTITS +VM+D GISRG GFV +ST E+A++A+ EMNGK+
Sbjct: 301 NLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKI 360
Query: 387 VVSKPLYVALAQRKEERRARL--QFSQMRPPV-GPRMPMYPPVAPGLGQQLFYGQGPPII 443
++ KP++VALAQR++ RRA+L Q +Q R + GP YP P G
Sbjct: 361 ILGKPIFVALAQRRDVRRAQLEAQHNQGRGNLPGPMGGAYPGAVPMPGMY---------- 410
Query: 444 PPQPGFGYQQQLVPGMRPNYFVPMVQPGQ----QNQRPGGR 480
+PG PGM+P Y VP + G+ +PGGR
Sbjct: 411 --RPG--------PGMQPAYPVPQMMQGRGGYGMQAQPGGR 441
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F +LYV +LD +V D L D F+ MG + S RV +DL T S G+G+V Y+ +AT
Sbjct: 291 KFQGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDAT 350
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA++E+N + GKPI + + R
Sbjct: 351 RAVNEMNGKIILGKPIFVALAQR 373
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 221/434 (50%), Positives = 293/434 (67%), Gaps = 25/434 (5%)
Query: 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA 90
VG A + SLYVG+LD +V+++ L+++FN +G V S+RVCRD TRRSLGY YVNY
Sbjct: 165 VGGAAVPQTASLYVGELDHTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLN 224
Query: 91 AHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A + R RDP +RK+G GNIFIKNLD++IDNKALHDTF+
Sbjct: 225 AADGER---------------------RDPALRKTGQGNIFIKNLDEAIDNKALHDTFAA 263
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FGN+LSCKVATD G+SRGYG+V ++ ESA++AI +N MLLNDKQVFVG + ++ER+
Sbjct: 264 FGNVLSCKVATDETGKSRGYGYVHYETAESAEAAIKAVNRMLLNDKQVFVGHHISRKERQ 323
Query: 211 STADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
S D+ R F N+YVKNL TE + + +F EFG ITS + D +GKS+ FGFVN+++
Sbjct: 324 SQIDEARAQFTNIYVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYEN 383
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
++A R+V ++ K+ K +VG+AQKK ER+ EL E + +E +K+ G+NLYVKN
Sbjct: 384 HEEAERAVNEMHEKEIKGKVLFVGRAQKKSERQSELARSHEAAKQERQNKYAGVNLYVKN 443
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LDD + DDKL+ F FGTITSCKVMR+ IS+G GFV FST +EA+KA+TEMN KM+
Sbjct: 444 LDDDVDDDKLRAEFEAFGTITSCKVMRNERDISKGFGFVCFSTPDEATKAVTEMNNKMIG 503
Query: 389 SKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQ-QLFYGQGPPIIPPQP 447
+KPLYV+LAQR++ RR +L+ Q+ RM P + PG Q Q++YG GP PPQ
Sbjct: 504 TKPLYVSLAQRRDVRRQQLE-GQIMQRNQMRMQQAPMMGPGYMQPQMYYGPGPGGYPPQA 562
Query: 448 GFGYQQQLVPGMRP 461
G G PGM P
Sbjct: 563 GRGVMGYPQPGMMP 576
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/492 (45%), Positives = 308/492 (62%), Gaps = 77/492 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN+A++ RAL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERAL 119
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCK 179
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D LG S+GYGFV ++ E+A AI +NGMLLN+K+VFVG + K++R S + K
Sbjct: 180 VAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 239
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ T+D+ +++F ++G ITS ++ D + GKS+ FGFVN+ + +DA ++
Sbjct: 240 NFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKA 299
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI-- 333
V+ LN F ++ YVG+AQKK+ERE EL+ ++E + +E + K++G+NLYVKNL D +
Sbjct: 300 VDELNDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDD 359
Query: 334 ------------------------------------SDDKLKELFSE------------- 344
+DDK K++ E
Sbjct: 360 EELRKIFEAYGAITSAKVMRDVTPLDKAETDAKENKTDDKEKQVDGEPTEDKNGEEQEDM 419
Query: 345 ------FGTIT---SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
T+T KV+ G S+G GFV FS +EA+KA+TE+N KM+ KPLYVA
Sbjct: 420 EELEKKMDTVTIGGEKKVL----GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVA 475
Query: 396 LAQRKEERRARLQFS-QMRPPVGPRMPMYP----PVAPGLGQ-QLFYG-QGPPIIPPQPG 448
LAQRKE R+ +L+ S Q R V RM P+AP Q Q+F G G P++ P G
Sbjct: 476 LAQRKEVRKTQLEASIQARNQV--RMQQQATAGGPMAPQFMQPQMFMGPNGQPMMMPGGG 533
Query: 449 FGYQQQ-LVPGM 459
G Q +PGM
Sbjct: 534 RGAAQMPFMPGM 545
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%)
Query: 558 LANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 617
L A P QQ+ +LGE LYP + + + A K+TGMLLEMD E+L L +AL+AKV E
Sbjct: 697 LNAAPPSQQKQILGEALYPKIHAQQPELAGKITGMLLEMDNHELLGLTTDDDALRAKVDE 756
Query: 618 AMEVLRNVAQQQATGPSPTD 637
AM V + Q+ P D
Sbjct: 757 AMNVYEEYVKNQSGPGGPED 776
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 32/176 (18%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +L V+D +L +F G + S +V RD+ T N +
Sbjct: 342 KYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKVMRDV-TPLDKAETDAKENKTDDKE 400
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ +D +PT K+G ++ L+K +D +
Sbjct: 401 KQVD------------------GEPTEDKNGEEQEDMEELEKKMD-------------TV 429
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
+ LG+S+G+GFV F N + A A+ +LN +++ K ++V RK+ R++
Sbjct: 430 TIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKT 485
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 277/396 (69%), Gaps = 19/396 (4%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G F S SLYVGDL ++ L+++FN +G V S+RVCRD TRRSLGY YVN++
Sbjct: 4 GSTVPFHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNV 63
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RALD +N+T + KP RIM+S RDPT+RKSG GN+F+KNLD SID+KAL DTFS F
Sbjct: 64 SDAERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLF 123
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
GNILSCKVATD G+S+GYG+V +++E++A AI+K+N M + DK+V+VG F+R+ ER
Sbjct: 124 GNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTERSG 183
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+D T N+YVKN E+ L+K F FG ITS ADG + FG+VNF+ D
Sbjct: 184 QSDWT---NLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA--FGWVNFEAHDA 238
Query: 272 AARSVEALNG-----------KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
A +++ALNG +VG+AQKK ERE ELK KF+ + E K++
Sbjct: 239 AVAAMDALNGIAELPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKYQ 298
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKAL 379
G+NL+VKNLDD + DD+L+E F+E+GTITS +VMR+P G SRG GFV FS+ EEA+KA+
Sbjct: 299 GVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAV 358
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR 413
TEMN K+V+ KP++VALAQRKE RRA+L Q +Q R
Sbjct: 359 TEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRR 394
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 252/345 (73%), Gaps = 3/345 (0%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A P+P + + +A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD
Sbjct: 26 AAPAPEVTAVESTTAP-NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDA 84
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNL
Sbjct: 85 VTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNL 144
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLND
Sbjct: 145 DSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLND 204
Query: 196 KQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K+VFVG + K++R+S + K F NVY+KN+ + TE++ +++F +FG ITS + RD
Sbjct: 205 KKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRD 264
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+GKS+ FGFVNF + A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E +
Sbjct: 265 QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARL 324
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD N
Sbjct: 325 EKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 160/299 (53%), Gaps = 15/299 (5%)
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRG 169
+ + S P + + ++++ LD S+ L++ FS+ G + S +V D++ + S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
Y +V ++N + A++ LN L+ K + +R+ KT NV++KNL
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
L F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
+VG K +R+ KFE+ K N+Y+KN+D +++++ +ELF +FG IT
Sbjct: 208 FVGHHISKKDRQ----SKFEEM------KANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
S + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K ER L+
Sbjct: 258 SATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELR 316
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 174/343 (50%), Gaps = 63/343 (18%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG 417
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R +
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 489
Query: 418 ----------PRMPMYPPVAPGLGQQLFY-GQ-GPPIIPPQPGFGYQQQLVPGMRPNYFV 465
P+ M P V G GQQ F GQ G PPQPG +PG RP +
Sbjct: 490 QQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQY- 546
Query: 466 PMVQPGQQNQRPGGRRSGTGPMQQ------------AQQPIP--LMQPRMLPRGRIYRYP 511
P PGQQ GGR G GP QQ Q P+P + P+ + + + R
Sbjct: 547 PGPFPGQQ----GGR--GMGPNQQLPPNFQGIPMGAMQGPVPNGMGYPQGMAQVQFGRGA 600
Query: 512 PG-CNIPDVPVAG--------------VP---GGMLPGPYDIGGMPFRDAAF--SQPMQT 551
G +P +P G VP G M PG G + A + +
Sbjct: 601 GGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAG 660
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
G A AL+ A P QQ+ +LGE LYP + + + A K+TGMLLEM+ TE+L LLE EAL
Sbjct: 661 GLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEAL 720
Query: 612 KAKVAEAM----EVLRNV-AQQQATGPS--PTDRVASLSLNDN 647
+AKV EA+ E ++N + +ATG + P + S +N
Sbjct: 721 RAKVDEALNVYDEYMKNKGGESEATGEAAKPKEAAKETSTEEN 763
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 252/345 (73%), Gaps = 3/345 (0%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A P+P + + +A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD
Sbjct: 26 AAPAPEVTAVESTTAP-NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDA 84
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNL
Sbjct: 85 VTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNL 144
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLND
Sbjct: 145 DSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLND 204
Query: 196 KQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K+VFVG + K++R+S + K F NVY+KN+ + TE++ +++F +FG ITS + RD
Sbjct: 205 KKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRD 264
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+GKS+ FGFVNF + A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E +
Sbjct: 265 QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARL 324
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD N
Sbjct: 325 EKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 160/299 (53%), Gaps = 15/299 (5%)
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRG 169
+ + S P + + ++++ LD S+ L++ FS+ G + S +V D++ + S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
Y +V ++N + A++ LN L+ K + +R+ KT NV++KNL
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
L F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
+VG K +R+ KFE+ K N+Y+KN+D +++++ +ELF +FG IT
Sbjct: 208 FVGHHISKKDRQ----SKFEEM------KANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
S + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K ER L+
Sbjct: 258 SATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELR 316
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 147/293 (50%), Gaps = 56/293 (19%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG 417
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R +
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 489
Query: 418 ----------PRMPMYPPVAPGLGQQLFY-GQ-GPPIIPPQPGFGYQQQLVPGMRPNYFV 465
P+ M P V G GQQ F GQ G PPQPG +PG RP +
Sbjct: 490 QQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQY- 546
Query: 466 PMVQPGQQNQRPGGRRSGTGPMQQ------------AQQPIP--LMQPRMLPRGRIYRYP 511
P PGQQ GGR G GP QQ Q P+P + P+ + + + R
Sbjct: 547 PGPFPGQQ----GGR--GMGPNQQLPPNFQGIPMGAMQGPVPNGMGYPQGMAQVQFGRGA 600
Query: 512 PG-CNIPDVPVAG--------------VP---GGMLPGPYDIGGMPFRDAAF--SQPMQT 551
G +P +P G VP G M PG G + A + +
Sbjct: 601 GGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAG 660
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
G A AL+ A P QQ+ +LGE LYP + + + A K+TGMLLEM+ TE+L L
Sbjct: 661 GLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSL 713
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/327 (56%), Positives = 243/327 (74%), Gaps = 2/327 (0%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KNL +D+ +K+F +FG ITS + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +VE +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN 358
I D+KL+ELF +GTITS KVMRD N
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTN 374
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 156/290 (53%), Gaps = 15/290 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KNLD I DD+ +++F +FG ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE 271
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K ER L+
Sbjct: 272 GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 321
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 152/304 (50%), Gaps = 61/304 (20%)
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMR 413
+ P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQAR 487
Query: 414 PPVG----------PRMPMYPPVAPGLGQQLFY--GQGPPIIPPQPGFGYQQQLVPGMRP 461
+ P+ M P V G GQQ F GQ PPQPG +PG RP
Sbjct: 488 NTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPGGRP 544
Query: 462 NYFVPMVQPGQQNQRPGGRRSGTGPMQQA----QQPIPL-MQ-PRMLPRGRIY------R 509
+ P PGQQ GGR G GP QQ Q IP+ MQ P +P G Y +
Sbjct: 545 GQY-PGPFPGQQ----GGR--GMGPNQQIPPNFAQGIPMGMQGPGGIPNGMGYPQMAQVQ 597
Query: 510 YPPGC----NIPDVPVA-------------GVP---GGMLPGPYDIGGMPFRDAAFSQPM 549
+ G +P +P+ G P G M PG GG AA + P
Sbjct: 598 FGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQ---GGRGQNAAAPAGPQ 654
Query: 550 Q---TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
+ G A L A P QQ+ +LGE LYP + + + A K+TGMLLEMD TE+L L
Sbjct: 655 EGAAGGVNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLTR 714
Query: 607 SPEA 610
P A
Sbjct: 715 KPCA 718
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/327 (56%), Positives = 243/327 (74%), Gaps = 2/327 (0%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KNL +D+ +K+F +FG ITS + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +VE +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN 358
I D+KL+ELF +GTITS KVMRD N
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTN 374
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 156/290 (53%), Gaps = 15/290 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KNLD I DD+ +++F +FG ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE 271
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K ER L+
Sbjct: 272 GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 321
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 167/328 (50%), Gaps = 61/328 (18%)
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS- 410
K + P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S
Sbjct: 425 KSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 411 QMRPPVG----------PRMPMYPPVAPGLGQQLFY--GQGPPIIPPQPGFGYQQQLVPG 458
Q R + P+ M P V G GQQ F GQ PPQPG +PG
Sbjct: 485 QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPG 541
Query: 459 MRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA----QQPIPL-MQ-PRMLPRGRIY---- 508
RP + P PGQQ GGR G GP QQ Q IP+ MQ P +P G Y
Sbjct: 542 GRPGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFAQGIPMGMQGPGGIPNGMGYPQMA 594
Query: 509 --RYPPGC----NIPDVPVA-------------GVP---GGMLPGPYDIGGMPFRDAAFS 546
++ G +P +P+ G P G M PG GG AA +
Sbjct: 595 QVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQ---GGRGQNAAAPA 651
Query: 547 QPMQT---GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLH 603
P + G A L A P QQ+ +LGE LYP + + + A K+TGMLLEMD TE+L
Sbjct: 652 GPQEGAAGGVNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLS 711
Query: 604 LLESPEALKAKVAEAMEVLRNVAQQQAT 631
LLE EAL+AKV EA+ V + + T
Sbjct: 712 LLEDEEALRAKVDEALSVYDEYMKNKGT 739
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 244/607 (40%), Positives = 352/607 (57%), Gaps = 30/607 (4%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V+ SLYVGDL SV + LYD F + + SVR+C+D S+ RSL YGY N+ + +A A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++ N + LNGK IR+M+S R P R++G GN+F+KNL +S+ N L D F FGNI+SC
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVAT G+SRGYGFVQF+ E++A +AI LN ++ DK+++VG F++K +R +K
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEK-- 199
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ N+Y+KNL +ED L++ F EFG I S A+ +D + + + FVNFD+P+DA R+ E
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG KF K YVG+AQKK ERE L+ +F++ +E + N+YVKN++ ++++++
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+ GTITS K+M D G S+G GFV FST EEA A+ +G+M KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
Q+KE+R+ +LQ + V PG L+Y PG YQ +
Sbjct: 380 QKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTN------THPGMVYQSYPLM 433
Query: 458 GMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIP 517
N M+ N + T P A P Q R+ G++ R +
Sbjct: 434 WKSAN----MIGSSYPNS-----EAVTYPPMVANAPSKNRQNRI---GKLDRNA----VS 477
Query: 518 DVPVAGVPGGMLPGPYDIGGMPF-RDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
VP MLP D R + M+ E Q LLGE L+P
Sbjct: 478 YVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQQRQSETVGMEMQ--LLGELLHP 535
Query: 577 LVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSP- 635
LV++LE A K+TGMLLEMD++E+L LL+SPE L +V EA EVL++ ++ T P+
Sbjct: 536 LVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS-SKTNLTAPNTH 594
Query: 636 -TDRVAS 641
+D +AS
Sbjct: 595 RSDYLAS 601
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L SV ++ L D+F + G +VS +V L +S GYG+V +
Sbjct: 105 DARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQED 163
Query: 93 EATRALDELNFTPLNGKPIRI--MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A A+ LN T + K I + D + N+++KNLD + L + F+
Sbjct: 164 AAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAE 223
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG I+S +A D RGY FV FDN E A+ A + +NG K ++VG +K ERE
Sbjct: 224 FGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Query: 211 STADK------------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
+ + +N+YVKN++ TE++L+K F + G ITST +M D GKS
Sbjct: 284 QLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKS 343
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K FGFV F P++A +V+ +G+ F K YV AQKK +R+M+L+ +F
Sbjct: 344 KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>gi|106879567|emb|CAJ38367.1| polyA-binding protein [Plantago major]
Length = 314
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 239/319 (74%), Positives = 268/319 (84%), Gaps = 20/319 (6%)
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
TITSCKVMRDP+GISRGSGFVAFST EE+++AL+EMNGKMV+SKPLYVALAQRKEERRAR
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRAR 60
Query: 407 LQ--FSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPG 458
LQ FSQMRP + PRMPMYPP APG+GQQLFYGQGPP +IP Q GFGYQQQLVPG
Sbjct: 61 LQAQFSQMRPVAMPPSIAPRMPMYPPGAPGIGQQLFYGQGPPAMIPSQAGFGYQQQLVPG 120
Query: 459 MRP------NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPP 512
MRP N+F+PMVQ GQQ QRPGGRR G MQQAQQP+P+MQ +M+PRGR+YR+PP
Sbjct: 121 MRPGGTPMPNFFMPMVQQGQQGQRPGGRRGGGP-MQQAQQPVPVMQQQMMPRGRMYRFPP 179
Query: 513 GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAA-FSQPMQTGALASALANASPEQQRTLLG 571
G N+PDVP+ G GGM PYD+ GM RDAA QPM ALASALANA+PEQQRT+LG
Sbjct: 180 GRNVPDVPMTG--GGMFSVPYDMTGMLPRDAAAIPQPMPVTALASALANATPEQQRTMLG 237
Query: 572 ENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
ENLYPLVDQLEH++AAKVTGMLLEMDQTEVLHLLESP+ALK+KV EAMEVLRNV QQ
Sbjct: 238 ENLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKSKVNEAMEVLRNVQQQGNN 297
Query: 632 GPSPTDRVASLSLNDNIVS 650
SP D++ASLSLNDN+VS
Sbjct: 298 --SPADQLASLSLNDNLVS 314
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS VMRD G S+ GFV F P+++AR++ +NGK K YV AQ+K ER L
Sbjct: 2 ITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRARL 61
Query: 305 KGKFEQ 310
+ +F Q
Sbjct: 62 QAQFSQ 67
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
I SCKV D G SRG GFV F E + A+ ++NG ++ K ++V RK+ER +
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRA 59
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/436 (49%), Positives = 286/436 (65%), Gaps = 35/436 (8%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G + F S SLYVGDL ++ L+++FN +G V S+RVCRD TRRSLGY YVN++
Sbjct: 3 GASSSVPFHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFH 62
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+A RALD +N+T + KP RIM+S RDPT+RKSG GN+F+KNLD SID+KAL DTFS
Sbjct: 63 NVSDAERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDSSIDHKALFDTFS 122
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNILSCKVATD G+S+GYG+V +++E++A AI+K+N M + DK+V+VG F+R+ ER
Sbjct: 123 LFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTER 182
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+D T N+YVKN E L+K F F ADG + FG+VNF+
Sbjct: 183 SGQSDWT---NLYVKNFPADWDEATLRKAFEMFAA---------ADGSA--FGWVNFEGH 228
Query: 270 DDAARSVEALNGKK-----------FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
D A +++ALNG +VG+AQKK ERE ELK KF+ + E K
Sbjct: 229 DAAVAAMDALNGASELPGHAGTAPITLKSPLFVGRAQKKVERERELKAKFDAAKIERIKK 288
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASK 377
++G+NL+VKNLDD++ DD+L+E F+E+GTITS +VMR+P G SRG GFV FS+ EEA+K
Sbjct: 289 YQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAK 348
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRA--------RLQFSQMRPPVGPRMP-MYPPVAP 428
A+TEMN K+V+ KP++VALAQRKE RRA RL + + P G MP MY AP
Sbjct: 349 AVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRLHPAHLSAPYGAAMPIMYAAGAP 408
Query: 429 GLGQQLFYGQGPPIIP 444
G QG P +P
Sbjct: 409 GGHPMGMAPQGHPGVP 424
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/441 (47%), Positives = 278/441 (63%), Gaps = 3/441 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V S+YVGDL V + L+ F + G + SVRVCRD T SL YGYVN+ + +A RA
Sbjct: 10 VPASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRA 69
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ N + LNGK IR+M+ +RDP RKSG GN+F+KNL SIDN LHD F +GNILS
Sbjct: 70 IKLRNNSYLNGKVIRVMWLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFKKYGNILSS 129
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV G+S+GYGFVQF+ EESA +AI+KLNG + +KQ++VG F+RK +R +
Sbjct: 130 KVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDRILPGYDAK 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ N+Y+KNL TE L++ F FG I S A+ +D +G SK F FVN+++PDDA +++E
Sbjct: 190 YTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAME 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
A+NG +F K YV +AQKK ERE L +FE+ KE K++ NLYVKN+DD ++D +
Sbjct: 250 AMNGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKE 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++LFS GTITS KVMRD GIS+G GFV FS EEA+KA+ NG KPLY+A+A
Sbjct: 310 LRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAIA 369
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQ-QQLV 456
QRK+ER+ +L P PV PG FY ++ Q G YQ L
Sbjct: 370 QRKKERKTQLNL-HYAPQQAGLDGSSTPVIPGGVPPYFYHSVASLM-FQSGLLYQPLGLR 427
Query: 457 PGMRPNYFVPMVQPGQQNQRP 477
G R N FVP + Q +Q P
Sbjct: 428 SGWRANDFVPPARSFQHSQVP 448
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +++LYV ++D V D +L DLF+ G + SV+V RD S G+G+V ++ EA
Sbjct: 290 KYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRD-DKGISKGFGFVCFSNPEEAN 348
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ N + KP+ I + R
Sbjct: 349 KAVMSFNGCTFHRKPLYIAIAQR 371
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 244/554 (44%), Positives = 322/554 (58%), Gaps = 94/554 (16%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 53 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 112
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 113 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 172
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 173 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 232
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL T ++ +++F ++G ITS ++ RD + GKS+ FGFVNF + D AA +
Sbjct: 233 NFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAA 292
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD----- 330
VE LN K++ ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL
Sbjct: 293 VEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 352
Query: 331 --------------------DSISD-----DKLKELFS------------EFGTITSCKV 353
D+ISD +K KE E G S +
Sbjct: 353 EKLRDLFIGFGNITSARVMRDTISDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEK 412
Query: 354 M--------RDPN----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
+ P G S+G GFV FS +EASKA+TEMN +MV KPLYVALAQRK+
Sbjct: 413 TDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 402 ERRARLQFS----------QMRPPVGPRMP-MYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
R+++L+ S Q+ G P M P V GQQ F P + G
Sbjct: 473 VRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFI----PANAQRGGMA 528
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPG-----GRRSGTGPMQQ--------AQQPIP-- 495
+ QQ PGM +P + G+ Q PG G R GP QQ Q +P
Sbjct: 529 FAQQ--PGM----VLPGMPGGRPGQYPGGFPQQGGRGLAGPNQQLPPNAFGLGAQGLPIG 582
Query: 496 -LMQPRMLPRGRIY 508
L P +P G Y
Sbjct: 583 ALQGPGGIPNGLTY 596
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 154/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
PT + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKNL+ +++++ +ELF ++G ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNE 271
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV F + A+ A+ ++N K + LYV AQ+K ER L+
Sbjct: 272 TGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELR 322
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/478 (45%), Positives = 296/478 (61%), Gaps = 70/478 (14%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN+A++ RAL
Sbjct: 52 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERAL 111
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + GKP RIM+S RDP +RK+G GNIFIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 112 EELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 171
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G SRGYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R S + K
Sbjct: 172 VAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 231
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ TT+D+ +++F ++G ITS ++ RD +GK + FGFVN+ +DA ++V
Sbjct: 232 NFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAV 291
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD----- 331
+ LN F ++ YVG+AQKK+ERE EL+ ++E +E + K+ G+NLYVKNL D
Sbjct: 292 DELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDE 351
Query: 332 ----------SISDDKL-----------------------------------------KE 340
SI+ K+ +E
Sbjct: 352 ELRKVFEAYGSITSAKVMRDTTPADQVENAEEEKKEDGENEAESSEEKKEDEKKEDGTEE 411
Query: 341 LFSEFGTIT---SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L + T+T KV+ G S+G GFV FS +EA+KA+TE+N KM+ KPLYVALA
Sbjct: 412 LTKKLDTVTIGGEKKVL----GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALA 467
Query: 398 QRKEERRARLQFS-----QMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
QRKE R+++L+ S Q+R PP A Q + G PI+ P G G
Sbjct: 468 QRKEVRKSQLEASIQARNQVRMQQQATAGGIPPQAFMQPQFVLGPNGQPIMIPGSGRG 525
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/322 (55%), Positives = 248/322 (77%), Gaps = 3/322 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S D K
Sbjct: 179 KVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN++ T+D+ + +F ++G +TS+++ RD + GKS+ FGFVNF +DA++
Sbjct: 239 ANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASK 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LN K+F + YVG+AQKK+ERE EL+ +E + +E A K++G+NLY+KNLDD +
Sbjct: 299 AVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVD 358
Query: 335 DDKLKELFSEFGTITSCKVMRD 356
D+KL++LFSEFG ITS KVMRD
Sbjct: 359 DEKLRQLFSEFGPITSAKVMRD 380
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 157/289 (54%), Gaps = 22/289 (7%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S V +D +G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGIS 361
E+K F N+YVKN++ ++DD+ + LF ++G +TS + RD G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
RG GFV F++ E+ASKA+ E+N K + LYV AQ+K ER L+ S
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKS 331
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 163/339 (48%), Gaps = 71/339 (20%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD+++++ L+D F G ++S +V +D S GYG+V+Y A++A+
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKH 208
Query: 101 LNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN K + + + +D + K+ NI++KN++ + + F +G++
Sbjct: 209 VNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDV 268
Query: 155 LSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-- 211
S +A D G+SRG+GFV F + E A A+ +LN + + ++VG +K ERE
Sbjct: 269 TSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEEL 328
Query: 212 ----------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA------- 254
A K + N+Y+KNL + ++ L+++F EFG ITS VMRD+
Sbjct: 329 RKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEE 388
Query: 255 -----------------------DGKSK-----------------CFGFVNFDDPDDAAR 274
D K + FGFV F +PDDA +
Sbjct: 389 GESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATK 448
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+V +N + ++K YV AQ+K R K + EQS++
Sbjct: 449 AVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 19/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV L + TE L ++F + G + S V RDA +S + +VN++ D +++E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + +L++T N+++KNLD +I + L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKTGQG----NVFIKNLDVAIDNKAL 165
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ F+ FG I SCKV +D NG S+G GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 166 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 399 RKEERRARLQFSQMR 413
K++R+++ F +M+
Sbjct: 226 PKKDRQSK--FDEMK 238
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 145/321 (45%), Gaps = 63/321 (19%)
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR--------ARLQFSQMRPPV 416
GFV F+ ++A+KA+ EMN +MV +KPLYVALAQRK+ R+ AR Q +
Sbjct: 436 GFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQARNQLRMQQAAA 495
Query: 417 GPRMP---MYPPVAPGLGQQLFY-----GQGPPI----IPPQP--------GFGYQQ--- 453
MP M PV G G Q + G+G P +P QP GF QQ
Sbjct: 496 AAGMPQQYMQAPVFYGPGSQPGFMPPAGGRGMPYPQGGMPMQPGRPGQFPAGFAAQQGGR 555
Query: 454 -QLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPP 512
+ G+ P Y +P P Q MQQ QQ L GR
Sbjct: 556 GAMPQGIPPMYGLPGQFPPQGPFPQPNNPQFLAAMQQIQQ-------SALAGGRGGPAGR 608
Query: 513 GCNIPDVPVAGVPGGM-LPG--------------------PYDIGGMPFRDAAFSQPMQT 551
G VPV G+PGG LPG R A + +Q
Sbjct: 609 GPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGRAPAGAPAGARGAGAPEGLQ- 667
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
G LA+ N P QQ+ +LGE ++P + + + A K+TGMLLEMD TE++ L+E+ AL
Sbjct: 668 GQLAAVADN--PGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGAL 725
Query: 612 KAKVAEAMEVLRNVAQQQATG 632
++KV EA+ V + +QQ G
Sbjct: 726 RSKVDEALAVYDDYVRQQGDG 746
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 267/699 (38%), Positives = 374/699 (53%), Gaps = 139/699 (19%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN++ + +AL
Sbjct: 46 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 105
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 106 EELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCK 165
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K+ER S + K
Sbjct: 166 VAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKA 225
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ T+D+ + +F + G ITS ++ RD GKS+ FGFVN+ + A+ +V
Sbjct: 226 NFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAV 285
Query: 277 EALNGKKFDDKEWYVGKAQ----------KKYER-EMELKGKFE------QSLKETADKF 319
E LN +F ++ YVG+AQ K+YE +E + K++ ++L + D
Sbjct: 286 ETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 345
Query: 320 EGLNLYV--------KNLDDSI---------------------------------SDDKL 338
+ +++ K + D++ +DDK
Sbjct: 346 KLRDMFTPFGTITSAKVMRDAMPADRSDSPSDKKEEEKDGKEESKETEGEAKEDSTDDKK 405
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ ++ G + K + G S+G GFV FS +EA+KA+TEMN KM+ KPLYVALAQ
Sbjct: 406 ED--TKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQ 463
Query: 399 RKEERRARLQFS-QMRPPVGPRMPMYPPVAPGLGQQLFY--GQGPPIIPPQPGFGYQQQL 455
RK+ R+ +L+ + Q R + RM G Q+F GQ P + PP
Sbjct: 464 RKDVRKNQLEATIQARNQL--RMQQQQQQQFGGIPQMFIAPGQQPMMFPP---------- 511
Query: 456 VPGMRPNYFVPMVQPGQQNQRPGGRRSG-TGPMQ---------QAQQPIPLMQPRMLPRG 505
G R P PGQQ GGR +G G M AQQ P+ P + G
Sbjct: 512 --GGRGQMPFPAGIPGQQ----GGRGAGFPGAMPGQQGGRGGPNAQQMPPMYMPPGMAPG 565
Query: 506 RIYRYPPGCN---------------------IPDVPVAGVPGGMLPG------------- 531
+PP N P P+ G+P G + G
Sbjct: 566 A---FPPYMNPQYLQLAQAAQQAMGGRGGRGGPMAPMPGMPQGQMAGVPGMRGGQGGFPP 622
Query: 532 -------PYDIGG--MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLE 582
P G MPF G AL++A P QQ+ +LGE LYP + +++
Sbjct: 623 QGAGRGAPQGRGQPPMPFPQGGRGAGGPGGVDMGALSSAPPGQQKQMLGEALYPKIHEMQ 682
Query: 583 HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
+ A K+TGMLLEMD +E+++L AL+AKV EAM V
Sbjct: 683 PEFAGKITGMLLEMDNSELINLTSDEAALRAKVEEAMSV 721
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 224/530 (42%), Positives = 305/530 (57%), Gaps = 85/530 (16%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 117 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 177 VAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ + T+++ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +
Sbjct: 237 NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAA 296
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN + ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 297 VEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 336 DKLKELFSEFGTITSCKVMRDP----------------------NGISRGSGFVAFSTAE 373
+KL+ELFS +G ITS KVMR+ G A S +E
Sbjct: 357 EKLRELFSSYGNITSAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKSESE 416
Query: 374 EASKALTEMNGKMVVSKP--------------------------------------LYVA 395
+ SK+ + GK +KP LYVA
Sbjct: 417 DKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVA 476
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPP-------VAPGLGQQLFYGQGPPIIPPQPG 448
LAQRK+ R+ SQ+ P + PP P L P++ +
Sbjct: 477 LAQRKDVRK-----SQLETPSANSKLLLPPEWRNPSCSLPSSMAHLASKASSPVLSVECS 531
Query: 449 FGYQQQLV-PGM---RPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPI 494
+ V PGM RP F PGQQ GGR G G + +QP+
Sbjct: 532 LLVKLVWVMPGMPSGRPGQFPQF--PGQQ----GGRAPGQGGIHAMKQPL 575
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 153/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 226 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNE 275
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+
Sbjct: 276 TGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELR 326
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 141/312 (45%), Gaps = 74/312 (23%)
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
S S+DK K G S K + G S+G GFV FS +EASKA+TEMN +MV KP
Sbjct: 413 SESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKP 472
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPRMPMYPP-------VAPGLGQQLFYGQGPPIIP 444
LYVALAQRK+ R+ SQ+ P + PP P L P++
Sbjct: 473 LYVALAQRKDVRK-----SQLETPSANSKLLLPPEWRNPSCSLPSSMAHLASKASSPVLS 527
Query: 445 PQPGFGYQQQLV-PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
+ + V PGM P +PGQ Q PG QQ
Sbjct: 528 VECSLLVKLVWVMPGM------PSGRPGQFPQFPG------------QQ----------- 558
Query: 504 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASP 563
GG PG GG+ A QP+++ LA + NA+P
Sbjct: 559 ----------------------GGRAPGQ---GGI----HAMKQPLRSIILA--VFNAAP 587
Query: 564 E-QQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
E QQ+ +LGE +YP + + + A K+TGMLLEMD +E++ L++ AL+AKV EA+ V
Sbjct: 588 ESQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEALTVY 647
Query: 623 RNVAQQQATGPS 634
+ + P+
Sbjct: 648 DEYVKNKNDAPA 659
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/441 (47%), Positives = 277/441 (62%), Gaps = 3/441 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V SLYVGDL V D L++ F + + SVRVCRD T +SL YGYVN+ + +A RA
Sbjct: 10 VPASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRA 69
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ N + LNGK IR+M+S+ DP+ RKSG GN+F+KNL SIDN LHD F +GNILS
Sbjct: 70 MKLKNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSS 129
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV G+S+GYGFVQF++EESA +AI+KLNG + DKQ++VG F+RK +R +
Sbjct: 130 KVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPGYDAK 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ N+Y+KNL TE L++ F FG I S + +D +G SK F FVN+++PDDA +++E
Sbjct: 190 YTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAME 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
A+NG KF K YV +AQKK ERE L +FE+ KE K++ NLYVKN+DD ++D +
Sbjct: 250 AMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKE 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++LFS GTITS KVMRD GIS+G GFV FS EEA+KA+ NG M KPLY+A+A
Sbjct: 310 LRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIA 369
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQ-QQLV 456
QRK +R+ +L G P + G ++ + Q G YQ L
Sbjct: 370 QRKMDRKTQLNLHYAPQQTGLDGSSTPVIPGGFPPYFYHSVASQMF--QSGLLYQPLGLR 427
Query: 457 PGMRPNYFVPMVQPGQQNQRP 477
G R N VP + QQ+ P
Sbjct: 428 SGWRANDSVPPTRSFQQSHLP 448
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +++LYV ++D V D +L DLF+ G + SV+V RD S G+G+V ++ EA
Sbjct: 290 KYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRD-DKGISKGFGFVCFSNPEEAN 348
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ N + KP+ I + R
Sbjct: 349 KAVRSFNGCMFHRKPLYIAIAQR 371
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 239/586 (40%), Positives = 324/586 (55%), Gaps = 80/586 (13%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKP+RIM+S RDP++RK
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKX---------------------------------X 97
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 98 XXXXXXXSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 157
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA
Sbjct: 158 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQXXXX 217
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++
Sbjct: 218 XMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 277
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 278 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Query: 398 QRKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------ 442
QRKEER+A L M+ R P+ P P F P
Sbjct: 337 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQI 396
Query: 443 --IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP- 499
+ P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 397 AQLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRXXXX 447
Query: 500 ---RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALAS 556
R +P+ Y+Y G P + P + P A Q AS
Sbjct: 448 XAVRTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-----------AVHVQGQEPLTAS 493
Query: 557 ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVL 602
LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+L
Sbjct: 494 MLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELL 539
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 109/210 (51%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 155 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 211
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +N LNGK I R + I + N+++KNLD
Sbjct: 212 AQXXXXXMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 271
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 272 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 330
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 331 LYVALAQRKEERQA-----HLTNQYMQRMA 355
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFST 371
+A + +LYV +L +++ L E FS G I S +V RD I+R G +V F
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVNFQQ 61
Query: 372 AEEASKALTEMNGKMVVSKPLYVALAQR 399
+A +AL MN ++ KP+ + +QR
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 251/620 (40%), Positives = 353/620 (56%), Gaps = 65/620 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL ++ LYD F+Q G V+S+RVCRD+ TRRSLGY YVN+ +A RA+D
Sbjct: 12 SLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L+ + S K + K FS FGNILSCKV
Sbjct: 72 MNFIQLSVNLASAISSS---------------KTWTRLSTTKCCTIPFSAFGNILSCKVN 116
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR-F 218
+ G+S+GYGFV F+ EE+A AI+KL+GML+NDK+VFVG F + ER D+ + F
Sbjct: 117 VNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQF 176
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV++KNL + L ++FGE G + S A+ D +GKS+ FGFV+F+ + A + VE
Sbjct: 177 TNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEK 236
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
L+ K+F+ K+ +VG+AQKK ER+ ELK KFE+ E +++G+NLYVKNLDDSI+DD L
Sbjct: 237 LHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDIL 296
Query: 339 KELFSEFGTITSCKVMRDPN---GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+E F+ +G ITS KVM D + S+G GFV F++AEEA+KA+TEMNG+++ SKPLYVA
Sbjct: 297 REHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVA 356
Query: 396 LAQRKEERRARLQFSQM-RPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQ 454
LAQRK+ER+A LQ M R G R+ +P P G PP I P ++
Sbjct: 357 LAQRKDERKAHLQQQYMQRVTTGMRLQAFPTNQPQYGNLYM----PPPIQQHP---FRMS 409
Query: 455 LVPGMRPNYF-VPMVQPGQQNQRPGGR-RSGTGPMQQAQQPIPLMQPRML-----PRGR- 506
+ P R + +Q ++ P R R + + + RM+ PR +
Sbjct: 410 IRPTPRWSQVKYDQLQSQINSEHPALRLRRESSRTFFIFSFVTSSECRMIFNSGGPRAQN 469
Query: 507 -------IYRYPP------GCNIPDVPVAGVPG--GMLPGPYDIGGMPFRDAA------F 545
I R+P + P+ + PG LP P + +P AA
Sbjct: 470 GVRGIAPITRFPANNYTARAGSRPNQSIIYKPGVRNPLPTPAE-AQIPAEQAAQPKAPDT 528
Query: 546 SQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
QP+ A+ LA A P++Q+ LLGE LYP + QL + K+TGMLLE++ +E+L +L
Sbjct: 529 EQPLN----ATILAAAPPQEQKQLLGERLYPSIRQLYPELCGKITGMLLEIENSELLAML 584
Query: 606 ES---PEALKAKVAEAMEVL 622
++ P L+ KV EA+ VL
Sbjct: 585 DTKSNPGLLQEKVQEAVTVL 604
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 254/355 (71%), Gaps = 10/355 (2%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ P A P+P + A+N S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQITTNVPAAQGEVPTPTSAAPAHNQN--------SASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ ++DD + +F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + A+ +V+ALN F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KVMRD
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 15/283 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++ E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ K + +R+ KT NV++KNL L F FG I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+D +SDD ++LF + G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFG 272
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
FV + E AS A+ +N + LYV AQ+K ER L+
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELR 315
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 67/125 (53%), Gaps = 15/125 (12%)
Query: 512 PGCNIPDVPVAGVPGGM----LPGPYDIGGMP-----------FRDAAFSQPMQTGALAS 556
P +P VP+AGVPG P GGMP + P G S
Sbjct: 599 PMPGMPQVPMAGVPGMRGGQGFPQGAGRGGMPQGRPGQSPMPNYPQGGRGGPAGAGVDMS 658
Query: 557 ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 616
AL A+P QQ+ +LGE LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 659 ALQGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTADEAALRAKVD 718
Query: 617 EAMEV 621
EAM V
Sbjct: 719 EAMSV 723
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/321 (55%), Positives = 243/321 (75%), Gaps = 2/321 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 60 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKA 119
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 120 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 179
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 180 KVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 239
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ T+D +++F +FG +TS ++ RD GK++ FGFVNF + + A+ +
Sbjct: 240 ANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAA 299
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLYVKNL+D + D
Sbjct: 300 VDELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDVDD 359
Query: 336 DKLKELFSEFGTITSCKVMRD 356
+KL+ELF+ +G ITS KVMRD
Sbjct: 360 EKLRELFAPYGAITSAKVMRD 380
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 154/285 (54%), Gaps = 15/285 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 61 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKAL 120
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 121 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 176
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A+++++ +NG ++K+ +VG K +R+
Sbjct: 177 LSCKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQ---- 232
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+ +DD+ +ELF +FG +TS + RD G +RG G
Sbjct: 233 SKFEEM------KANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFG 286
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
FV F E AS A+ E+NGK + + LYV AQ+K ER L+ S
Sbjct: 287 FVNFINHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELRKS 331
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 156/345 (45%), Gaps = 99/345 (28%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG 417
G S+G GFV F+ +EA+KA+TEMN +MV KPLYVALAQRK+ R+++L+ S Q R +
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQI- 505
Query: 418 PRMPMYPPVAPGLGQQ-----LFYGQG--PPIIPPQPG-----FGYQQQL-------VPG 458
RM A GL QQ +FYG G P +PP G F QQ + PG
Sbjct: 506 -RM-QQAAAAAGLPQQFIQAPMFYGPGQQPGFMPPNAGGRGMPFPLQQGMGIPAQGARPG 563
Query: 459 MRPNYFVPMVQ-----PGQQNQRPG-----GRRSGTGPMQQAQQP--------------- 493
PN+ P Q PG Q P G+ S P QA P
Sbjct: 564 QYPNF--PPQQAGRGGPGPQQLPPSVYGLPGQFSPGAPYGQAGNPQFLAAMQQAQAAALA 621
Query: 494 ---------------IPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVP----------GGM 528
+P M P M + VP G+P G
Sbjct: 622 GAGRGGPGGRMPMQALPGMPPNM------------AGLQGVPGPGMPPQAYRQQNNAGRG 669
Query: 529 LPG-PYDIGGMPFRDA-AFSQPMQT----------GALASALANASPEQQRTLLGENLYP 576
+PG P GG P + A + SQ Q AL + L A P QQ+ LLGE L+P
Sbjct: 670 MPGRPGQAGGFPPQGARSTSQAGQAPVPGASQEGASALQAQLTTAPPAQQKQLLGEALFP 729
Query: 577 LVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
+ ++ + A K+TGMLLEMD E++ L+E +L+AKV EA+ V
Sbjct: 730 KIQVMQPELAGKITGMLLEMDNAELVGLIEDESSLRAKVDEALTV 774
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/388 (51%), Positives = 273/388 (70%), Gaps = 8/388 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVG+L V ++ LY+ + + + V ++++ + Y + +
Sbjct: 5 ASSYPMASLYVGNLHGDVTEAMLYEKLSPR-DLTHLWVIKNITN--CVLYPRLKC-VSLV 60
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 61 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 120
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 121 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 179
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 180 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHED 239
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 240 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 299
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+IT +VM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 300 TIDDEKLRKEFSPFGSITRAEVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 358
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR 419
LYVALAQRKEER+A L M+ G R
Sbjct: 359 LYVALAQRKEERKAHLTNQYMQRVAGMR 386
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 569 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 628
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 629 VDEAVAVLQ 637
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/320 (55%), Positives = 243/320 (75%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A+ AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 174 VAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KN++ T+D + +F G +TS+++ RD DGKS+ FGFVNF + A+ +V
Sbjct: 234 NFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAV 293
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K F +E YVG+AQKK+ERE EL+ +E + E A K++G+NLY+KNLDD + D+
Sbjct: 294 EELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDE 353
Query: 337 KLKELFSEFGTITSCKVMRD 356
KL+ +F+EFG ITS KVMRD
Sbjct: 354 KLRTMFTEFGPITSAKVMRD 373
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 174/338 (51%), Gaps = 30/338 (8%)
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG------------AGNIFIK 133
VN +AA + A +LN T ++GKP + S T +G + ++++
Sbjct: 4 VNNSAAVDQLTA--DLNNTSIDGKP-SVDTSVSAATGDDAGPTPNSAAPHPQNSASLYVG 60
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKLNGML 192
LD S+ L + FS G + S +V D++ + S GY +V +++ + A+++LN L
Sbjct: 61 ELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNYTL 120
Query: 193 LNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+ + + +R+ KT NV++KNL L F FG I S V +
Sbjct: 121 IKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ 176
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D G SK +GFV+++ + A ++++ +NG ++K+ YVG K +R+ KFE+
Sbjct: 177 DETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQ----SKFEEM- 231
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
K N+Y+KN+ ++DD+ + LF G +TS + RDP+G SRG GFV F+T
Sbjct: 232 -----KANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTH 286
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
E AS A+ E+N K + LYV AQ+K ER L+ S
Sbjct: 287 EAASAAVEELNNKDFHGQELYVGRAQKKHEREEELRKS 324
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 70/338 (20%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD+++++ L+D F G ++S +V +D T S GYG+V+Y A +A+
Sbjct: 144 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ETGSSKGYGFVHYETDEAAQQAIKH 202
Query: 101 LNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN K + + + +D + K+ N++IKN+ + + F G++
Sbjct: 203 VNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYIKNIAPDVTDDQFRVLFEAHGDV 262
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES--- 211
S +A D G+SRG+GFV F E+A +A+++LN + ++++VG +K ERE
Sbjct: 263 TSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEELR 322
Query: 212 ---------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD--------- 253
A K + N+Y+KNL + ++ L+ +F EFG ITS VMRD
Sbjct: 323 KSYEAARIEKASKYQGVNLYIKNLDDDVDDEKLRTMFTEFGPITSAKVMRDSPSDDEDEE 382
Query: 254 -----ADGKSK-------------------------------------CFGFVNFDDPDD 271
A+ K K FGFV F +PDD
Sbjct: 383 GKEAEAEDKDKENKKADAEAEAAEAAEEENSDKEKKERKGSKKLGKSKGFGFVCFSNPDD 442
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
A ++V +N + + K YV AQ+K R+ +L+ +
Sbjct: 443 ATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASIQ 480
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 235/574 (40%), Positives = 323/574 (56%), Gaps = 64/574 (11%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF ++G+P+RIM+S RDP R++G GNIFIKNLD+ IDNK+++DTFS FGNILSCKVA
Sbjct: 1 MNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVA 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
TD G S+GYGFV F+ E SA++AI+K+NGMLL+DK+V+VG F + +R E ++
Sbjct: 61 TDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKY 120
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV+VKN E ++ L +F +FG ITS VM DA GK K FGFV F D D A ++VE
Sbjct: 121 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 180
Query: 279 LNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LN + D + V +AQKK ER ELK K+E +E +++G+NLYVKN+++ ++DD
Sbjct: 181 LNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDD 240
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L++ FS FGTITS KVM D NG S+G GFV F EEA+ A+T+MN KM+ +KPLYVAL
Sbjct: 241 GLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 300
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGL------GQQLFYGQGPPIIPPQPGFG 450
AQRKE+RRA+L M+ RM P + GQQ ++ P +PGF
Sbjct: 301 AQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNAQGRPGFQ 360
Query: 451 YQQQLVPG------------MRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
Q + G M+ + V P QQ + P R+ G Q P P
Sbjct: 361 PQSAQIRGPPGQRVFQNQMFMQYPFNQRQVYPQQQGRPP--MRTNDGRPQYGMAPRPAGA 418
Query: 499 PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM--------- 549
PR+ PG + P+ P P PF Q
Sbjct: 419 PRV--------GGPGVQMGGAPIR----QQGPAPRGAPQKPFYQGPPRQQQPQQHSQQPA 466
Query: 550 -----------------QTGALASALANASPEQQRTLLGENLYPLVDQL--EHDNAAKVT 590
Q + LA A+P++Q+ LLGE +Y L++++ H A K+T
Sbjct: 467 QQPGQQGQGQSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKIT 526
Query: 591 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRN 624
GM+LE+D E++ +L+ E ++KV EA VL N
Sbjct: 527 GMMLEIDNAELIMMLQDAELFRSKVEEAFGVLTN 560
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 164/299 (54%), Gaps = 21/299 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ + ++++ +LD +++ +YD F+ G ++S +V D S GYG+V++ H
Sbjct: 22 ARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATD-DEGNSKGYGFVHFETEHS 80
Query: 94 ATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDT 147
A A++++N L+ K + + + R +++ G N+F+KN + +D + L
Sbjct: 81 AQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAM 140
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLR 205
FS FG I S V TD+ G+ +G+GFV F ++++A A++KLN +L D ++ V +
Sbjct: 141 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 200
Query: 206 KQERESTADKT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K ER + + R+ N+YVKN+ E +D L+ F FG ITS VM D
Sbjct: 201 KSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD 260
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+G+SK FGFV F+ P++A +V +N K K YV AQ+K +R +L ++ Q L
Sbjct: 261 ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 319
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/357 (53%), Positives = 253/357 (70%), Gaps = 12/357 (3%)
Query: 10 APVA---VAAQPSPATNGI---ANNGGVGDA--RQFVSTSLYVGDLDLSVNDSQLYDLFN 61
APV VAA +P NG A GDA Q S SLYVG+LD SV ++ LY+LF+
Sbjct: 9 APVTDNVVAA--APEANGAPVEATPEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFS 66
Query: 62 QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPT 121
+GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP
Sbjct: 67 SIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPA 126
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181
+RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D S+GYGFV ++ E+A
Sbjct: 127 LRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAA 186
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIF 239
+AI +NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ T+D+ + +F
Sbjct: 187 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRTMF 246
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG ITS + D DGKS+ FGFVN+ + + A +V +N K+ ++ YVG+AQKK+E
Sbjct: 247 EAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYVGRAQKKHE 306
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
RE EL+ ++E + E A K++G+NLYVKNL D I D+KL++LF+ +GTITS KVMRD
Sbjct: 307 REEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 158/304 (51%), Gaps = 16/304 (5%)
Query: 107 NGKPIRIM-YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG 165
NG P+ + D + + ++++ LD S+ L++ FS+ G + S +V D++
Sbjct: 23 NGAPVEATPEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVT 82
Query: 166 Q-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVK 224
+ S GY +V ++N + A++ LN L+ K + +R+ KT NV++K
Sbjct: 83 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIK 138
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NL L F FG I S V +D SK +GFV+++ + A +++ +NG
Sbjct: 139 NLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLL 198
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
+DK+ +VG K +R+ KFE+ K N+Y+KN+D I+DD+ + +F
Sbjct: 199 NDKKVFVGHHISKKDRQ----SKFEEM------KANFTNIYIKNIDLEITDDEFRTMFEA 248
Query: 345 FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
FG ITS + D +G SRG GFV ++ E A A+ EMN K V S+ LYV AQ+K ER
Sbjct: 249 FGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYVGRAQKKHERE 308
Query: 405 ARLQ 408
L+
Sbjct: 309 EELR 312
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 151/310 (48%), Gaps = 46/310 (14%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG 417
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R +
Sbjct: 424 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 483
Query: 418 ----------PRMPMYPPVAPGLGQQLFYGQGPP----IIPPQPGFGYQQQLVPGMRPNY 463
P+ M P V G GQQ F PP +P P G +PG RP Y
Sbjct: 484 QQQAAAAAGMPQPFMQPAVFYGAGQQGFM---PPGQRGGMPFAPQGGMPMPNMPGGRPQY 540
Query: 464 FVPMVQPGQQNQRPGGRRSGTGPMQQ-----AQQPIPLMQPRMLPRGRIYRYPPG--CNI 516
P Q GGR G P QQ P+ + P +P G Y P
Sbjct: 541 PGPFPQ--------GGR--GMPPNQQLPPNFQGMPMGMQAPGGIPNGMGYPMPQAFGRGG 590
Query: 517 PDVPVAGVPGGM------LPGPYDIGGMPFRDAAFSQPMQTGALAS-ALANASPEQQRTL 569
V G+P M G +G + A QP A A+ AL A P QQ+ +
Sbjct: 591 GGRGVPGMPMNMRGGPGFGRGGPQMGRGRGQPAPGGQPAGEPASANQALLAAPPAQQKQM 650
Query: 570 LGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNV 625
LGE LYP + + + A K+TGMLLEMD E+L LL+ EAL+ KV EA+ E ++N
Sbjct: 651 LGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLLDDEEALRGKVDEALNVYDEYMKNK 710
Query: 626 AQQQATGPSP 635
+ P P
Sbjct: 711 GDGETAEPKP 720
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 52/287 (18%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ ++DL + D + +F G++ S + D + S G+G+VNY A A+
Sbjct: 226 TNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGK-SRGFGFVNYANHESAEAAVA 284
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
E+N + + + + + R+ +RK N+++KNL ID++
Sbjct: 285 EMNEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEK 344
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L D F+ +G I S KV D+ +S P
Sbjct: 345 LRDLFTPYGTITSAKVMRDAAERS--------------------------------PTPE 372
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDADGKSKCFG 262
++E + V + +E TE KK E G T + A GKSK FG
Sbjct: 373 AEEKEAAKETKDSEEKEVKTEETAEVKTEAAEKKT--EEGEATEEKKTEKKAFGKSKGFG 430
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
FV F PD+A+++V +N + + K YV AQ+K R +L+ +
Sbjct: 431 FVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 477
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 222/504 (44%), Positives = 305/504 (60%), Gaps = 45/504 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + D L+D F++ + SVR+CRD S+ RSL YGYVN+ + +A+ A++
Sbjct: 13 SLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEA 72
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK--------------------NLDKSID 140
N T L+GK IR+M+S+RDP R+SG GN+F+K NL SID
Sbjct: 73 KNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKVYLFAVTSIIDAELYFLVCLNLSDSID 132
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
N L F FGNILSCKV G+S+GYGFVQF++EE A +AI+KLNG +++ KQ++
Sbjct: 133 NVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYA 192
Query: 201 GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
G F+RK +R ++ N+Y+KNL TE+ L++ F EFG I S + +D +G S+
Sbjct: 193 GKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRG 252
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
FGFVNF+ P+DA R++EALNG + K YV +AQKK ERE L+ +FE+ E K+
Sbjct: 253 FGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYR 312
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
G N+YVKN+DD+++DD L+E FS G ITS K+MRD GIS+G GFV FST +EASKA+
Sbjct: 313 GSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVN 372
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGP 440
+G M KPLYVA+AQRKE+R+A+LQ + G P PV PG L+Y P
Sbjct: 373 TFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQRMAGLAGPS-TPVIPGGYPPLYYTAPP 431
Query: 441 PIIPPQPGFGYQQQ-LVPGMRPNYFVPMVQPG-------------QQNQRPGGRRSGTGP 486
+IPP+ G YQ L G R N +P +P +Q+++ GR +G P
Sbjct: 432 GVIPPRQGLMYQPLGLRTGWRANNLIPPTRPAFQPSPIPLMPNTPRQHRQNRGRTNGHIP 491
Query: 487 ---------MQQAQQPI-PLMQPR 500
M QQP P++ P+
Sbjct: 492 QGGGHSTAFMPHLQQPTQPVISPK 515
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 17/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+LY+ +LD V + L + F + G++ S+ + +D S G+G+VN+ + +A RAL+
Sbjct: 211 TNLYIKNLDPDVTEEALREKFFEFGKIASLVISKD-ENGMSRGFGFVNFESPEDAKRALE 269
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
LN L K + R R+ I K N+++KN+D ++++
Sbjct: 270 ALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDD 329
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS G I S K+ D G S+G+GFV F + A A++ +G + + K ++V
Sbjct: 330 LREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIA 389
Query: 204 LRKQERES 211
RK++R++
Sbjct: 390 QRKEDRQA 397
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/355 (51%), Positives = 255/355 (71%), Gaps = 10/355 (2%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ A A P+P + A+N S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVAAAQAEAPTPTSAAPAHNQN--------SASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ ++++ +++F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + A+ +V+ALN F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KVMRD
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 149/283 (52%), Gaps = 15/283 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++ E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ K + +R+ KT NV++KNL L F FG I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+D +SD++ +ELF + G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFG 272
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
FV + E AS A+ +N + LYV AQ+K ER L+
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELR 315
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 69/245 (28%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++DL V+D + +LF + G + S + RD +S G+G+VNY A+ A+D
Sbjct: 229 TNIYVKNIDLDVSDEEFRELFEKHGDITSASIARD-EQGKSRGFGFVNYIKHEAASAAVD 287
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN T G+ + + + R+ +RK N++IKNL+ +D++
Sbjct: 288 ALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEK 347
Query: 144 LHDTFSTFGNILSCKVATDS---------------------------------------- 163
L D F+ FG I S KV D+
Sbjct: 348 LRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEESKEEAEKTEESKEGADDKKDENKP 407
Query: 164 ------------LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
LG+S+G+GFV F N + A A+ ++N ++ K ++V RK R++
Sbjct: 408 GEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKN 467
Query: 212 TADKT 216
+ T
Sbjct: 468 QLEAT 472
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 67/127 (52%), Gaps = 17/127 (13%)
Query: 512 PGCNIPDVPVAGVPG-----GMLPGPYDIGGMPFRDAAFSQPM------------QTGAL 554
P +P VP+AG PG G P G MP PM G
Sbjct: 597 PMPGMPQVPMAGGPGMRGSQGFPPQGAGRGNMPQGGRPGQSPMPGYPQGGRGGPAGAGVD 656
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
SAL+ A+P QQ+ +LGE LYP + +++ + A K+TGMLLEMD +E+++L AL+AK
Sbjct: 657 MSALSGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTSDEAALRAK 716
Query: 615 VAEAMEV 621
V EAM V
Sbjct: 717 VEEAMSV 723
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/344 (53%), Positives = 247/344 (71%), Gaps = 7/344 (2%)
Query: 20 PATNGI---ANNGGVGDA--RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
P NG A + GDA Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD
Sbjct: 20 PEANGAPVEATSEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD 79
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKN
Sbjct: 80 AVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKN 139
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD +IDNKALHDTF+ FGNILSCKVA D S+GYGFV ++ E+A +AI +NGMLLN
Sbjct: 140 LDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLN 199
Query: 195 DKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
DK+VFVG + K++R+S + K F N+Y+KN+ T+D+ + +F FG ITS +
Sbjct: 200 DKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSH 259
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D DGKS+ FGFVN+ + + A +V +N K+ ++ YVG+AQKK+ERE EL+ ++E +
Sbjct: 260 DQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQYEAAR 319
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
E A K++G+NLYVKNL D I D+KL++LF+ +GTITS KVMRD
Sbjct: 320 MEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 158/304 (51%), Gaps = 16/304 (5%)
Query: 107 NGKPIRIMY-SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG 165
NG P+ + D + + ++++ LD S+ L++ FS+ G + S +V D++
Sbjct: 23 NGAPVEATSEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVT 82
Query: 166 Q-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVK 224
+ S GY +V ++N + A++ LN L+ K + +R+ KT NV++K
Sbjct: 83 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIK 138
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NL L F FG I S V +D SK +GFV+++ + A +++ +NG
Sbjct: 139 NLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLL 198
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
+DK+ +VG K +R+ KFE+ K N+Y+KN+D I+DD+ + +F
Sbjct: 199 NDKKVFVGHHISKKDRQ----SKFEEM------KANFTNIYIKNIDLEITDDEFRVMFEA 248
Query: 345 FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
FG ITS + D +G SRG GFV ++ E A A+ EMN K V ++ LYV AQ+K ER
Sbjct: 249 FGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKHERE 308
Query: 405 ARLQ 408
L+
Sbjct: 309 EELR 312
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 152/313 (48%), Gaps = 49/313 (15%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG 417
G S+G GFV FS+ +EASKA+TEMN +MV +KPLYVALAQRK+ RR++L+ S Q R +
Sbjct: 423 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRKDVRRSQLEASIQARNTIR 482
Query: 418 ----------PRMPMYPPVAPGLGQQLFYGQGPP----IIPPQPGFGYQQQLVPGMRPNY 463
P+ M P V G GQQ F PP +P P G +P RP Y
Sbjct: 483 QQQAAAAAGMPQPFMQPAVFYGAGQQGFM---PPGQRGGMPFAPQGGMPMPNMPAGRPQY 539
Query: 464 FVPMVQPGQQNQRPGGRRSGTGPMQQ-----AQQPIPLMQPRMLPRGRIYRYPPG--CNI 516
P Q GGR G P QQ P+ + P +P G Y P
Sbjct: 540 PGPFPQ--------GGR--GMPPNQQLPPNFQGMPMGMQAPGGIPNGMGYPMPQAFGRGG 589
Query: 517 PDVPVAGVPGGMLPGP--------YDIGGMPFRDAAFSQPM--QTGALASALANASPEQQ 566
V G+P M GP GG + A QP + + AL A P QQ
Sbjct: 590 GGRGVPGMPMNMRGGPGFSRGGPQMGRGGGRGQPAPGGQPAGGEPASANQALLAAPPAQQ 649
Query: 567 RTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVL 622
+ +LGE LYP + + + A K+TGMLLEMD E+L LL+ EAL+ KV EA+ E +
Sbjct: 650 KQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLLDDEEALRGKVDEALNVYDEYM 709
Query: 623 RNVAQQQATGPSP 635
+N + T P P
Sbjct: 710 KNKGDGETTEPKP 722
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/355 (51%), Positives = 253/355 (71%), Gaps = 10/355 (2%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ P A +P + A+N S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVPAAQGEVSTPTSAAPAHNQN--------SASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ +++D + +F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + A+ +V+ALN F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KVMRD
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 148/283 (52%), Gaps = 15/283 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++ E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ K + +R+ KT NV++KNL L F FG I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+D +SD+ ++LF + G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFG 272
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
FV + E AS A+ +N + LYV AQ+K ER L+
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELR 315
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 159/340 (46%), Gaps = 74/340 (21%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A A+
Sbjct: 137 NVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKH 195
Query: 101 LNFTPLNGKPIRIMYSYRDPTIR--------KSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+N LN K ++ + P K+ NI++KN+D + ++ D F G
Sbjct: 196 VNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHG 253
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
+I S +A D G+SRG+GFV + E+A +A+D LN ++++VG +K ERE
Sbjct: 254 DITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEE 313
Query: 213 ADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA------ 254
K +++ N+Y+KNL++ ++ L+ +F FG ITS VMRDA
Sbjct: 314 LRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGS 373
Query: 255 ---------------------------------------DGKSKC------FGFVNFDDP 269
G+ K FGFV F +P
Sbjct: 374 EDATDEKKDESKEESEEAKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNP 433
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
D+A ++V +N K ++K YV AQ+K R+ +L+ +
Sbjct: 434 DEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEATIQ 473
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/320 (55%), Positives = 241/320 (75%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN+A++ RAL
Sbjct: 55 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERAL 114
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 115 EELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCK 174
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A SAI +NGMLLN+K+VFVG + K++R S + K
Sbjct: 175 VAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 234
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ T+D+ + +F ++G ITS ++ D +GKS+ FGFVN+ +DA ++V
Sbjct: 235 NFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANKAV 294
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN F + YVG+AQKK+ERE EL+ ++E +E + K++G+NLYVKNL D I DD
Sbjct: 295 EELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDD 354
Query: 337 KLKELFSEFGTITSCKVMRD 356
+L+++F +G ITS KVMRD
Sbjct: 355 ELRKIFEPYGAITSAKVMRD 374
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 152/290 (52%), Gaps = 15/290 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++
Sbjct: 48 PSNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 107
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A+++LN L+ K + +R+ KT NV++KNL L
Sbjct: 108 NDGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDT 163
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++++NG ++K+ +VG K
Sbjct: 164 FAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKK 223
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R KFE+ K N+YVKN+D +DD+ + LF ++G ITS + D
Sbjct: 224 DR----MSKFEEM------KANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQE 273
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV + E+A+KA+ E+N + LYV AQ+K ER L+
Sbjct: 274 GKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELR 323
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/321 (55%), Positives = 242/321 (75%), Gaps = 3/321 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 117 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 177 VAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ + T+++ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +
Sbjct: 237 NFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAA 296
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN + ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 297 VEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 336 DKLKELFSEFGTITSCKVMRD 356
+KL+ELFS +G ITS KVMR+
Sbjct: 357 EKLRELFSSYGNITSAKVMRE 377
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 153/291 (52%), Gaps = 16/291 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 226 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNE 275
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+
Sbjct: 276 TGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELR 326
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 45/286 (15%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +++ V D + LF + G++ S + RD T +S G+G+VN++ A+ A++
Sbjct: 239 TNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN L G+ + + + R+ +RK N++IKNL ID++
Sbjct: 299 GLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 358
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS++GNI S KV +++ ++E+ K K G DK
Sbjct: 359 LRELFSSYGNITSAKVMREAISD---VPADAEKDKEADKEKAKKETGDKPEDK------- 408
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+ E + DK++ SE TE G + GKSK FGF
Sbjct: 409 AETKSDEKSEDKSK---------SEEKTE----------GKTDGAKTEKKHLGKSKGFGF 449
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V F +PD+A+++V +N + K YV AQ+K R+ +L+ +
Sbjct: 450 VCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQ 495
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 97/212 (45%), Gaps = 41/212 (19%)
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D S+DK K G K + G S+G GFV FS +EASKA+TEMN +MV K
Sbjct: 414 DEKSEDKSKSEEKTEGKTDGAKTEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGK 473
Query: 391 PLYVALAQRKEERRARLQFS----------QMRPPVGPRMPMYPPVAPGLGQQLFYGQGP 440
PLYVALAQRK+ R+++L+ S Q+ G P P +FYG
Sbjct: 474 PLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMAQPFMQPA-------VFYG--- 523
Query: 441 PIIPPQPGF--GYQQQLVPGMRPNYFVPMVQPGQQNQRPG------GRRSGTGPMQQAQQ 492
P Q GF G Q+ GM+ MV PG RPG G++ G G Q
Sbjct: 524 --APGQQGFLPGAQR----GMQFAGQAGMVMPGMPGGRPGQFAQFPGQQGGRG--MNPNQ 575
Query: 493 PIP---LMQPRMLPRGRIY--RYPPGCNIPDV 519
P+P M + +P G + P G N P +
Sbjct: 576 PLPPNFAMGGQGIPMGAMQGAGIPNGLNYPQM 607
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/364 (51%), Positives = 267/364 (73%), Gaps = 2/364 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVGDLD V++ +L D+F+ MG +VSVR+CRD + +SL Y YVN+ +A++AL
Sbjct: 30 ALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALAC 89
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN T L GKP+RIM+S+RDP RK+G N+F+KNLD SI++ +L D F FGNILSCKVA
Sbjct: 90 LNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA 149
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
++ G+S+ +GFVQFD+++SA +A++ LN +L+ K++FV F++K ER+ +++T+F N
Sbjct: 150 EEN-GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTN 208
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VYVKNL E TED ++ F EFG + + +M+D +GKS+ FGFVNF+ PD+A ++VEALN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G K+ +VG+AQKK ER+ LK + E + K + NLYVKNLD S+ DDKL+E
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS G ITS KVMR +G+S+G GFV FST+EEA KALT +NG ++ + LY+A+AQRK
Sbjct: 328 HFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 401 EERR 404
E+R+
Sbjct: 388 EDRQ 391
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 155/280 (55%), Gaps = 18/280 (6%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188
+++ +LD + L D FS G ++S ++ DSL G+S Y +V F A A+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALACL 90
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N L K + + R+ KT N++VKNL + L+ IF +FG I S
Sbjct: 91 NHTKLMGKPMRI----MWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSC 146
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V + +GKSKCFGFV FD D A ++ ALN D K+ +V K KK ER
Sbjct: 147 KVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCER-------- 197
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
KE +++ + N+YVKNL + +++D +++ FSEFG + + +M+D NG SRG GFV
Sbjct: 198 ----KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVN 253
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
F + +EA KA+ +NG M+ SK L+V AQ+K ER+ L+
Sbjct: 254 FESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLK 293
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 567 RTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 626
+ ++G +LYPLV L+ + A K+TGMLLEM+ ++++ LL+SP++L +V +A++ L+
Sbjct: 475 KEIIGHHLYPLVHSLQPELAGKITGMLLEMNNSDIIKLLDSPDSLAVQVEQAVQALKEAK 534
Query: 627 QQQATGPS---PTDRVASLS 643
++T S P + + LS
Sbjct: 535 AWRSTESSVALPVESASCLS 554
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/320 (55%), Positives = 248/320 (77%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYNA + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN++ TEDD +++F ++G +TS+++ RD +GKS+ FGFVNF + A ++V
Sbjct: 238 NFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN K F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + DD
Sbjct: 298 DELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 357
Query: 337 KLKELFSEFGTITSCKVMRD 356
KL+E+F +FG+ITS KVMR+
Sbjct: 358 KLREMFKDFGSITSAKVMRE 377
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 153/285 (53%), Gaps = 15/285 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G + S +V D++ + S GY +V ++ + A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ + + +R+ KT NV++KNL L F FG I
Sbjct: 118 EELNYTIIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 174 LSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 229
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+ +++D ++LF ++G +TS + RD G SRG G
Sbjct: 230 SKFEEM------KANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFG 283
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
FV F+T E A KA+ E+N K + LYV AQ+K ER L+ S
Sbjct: 284 FVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKS 328
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 54/286 (18%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++ V + LF + G V S + RD +S G+G+VN+ A +A+D
Sbjct: 240 TNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARD-QEGKSRGFGFVNFTTHESAFKAVD 298
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
ELN +G+ + + + R+ +RKS N++IKNLD +D+
Sbjct: 299 ELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDK 358
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F FG+I S KV ++ + D ++ K DK N Q V
Sbjct: 359 LREMFKDFGSITSAKVMRETPTEG--------DEDKKEKDESDKEN-------QEEVKEE 403
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
++++ +E + D+T+ E+D K + GKSK FGF
Sbjct: 404 VKEESKEESKDETK------------EGEEDKKAEKKSDKKL----------GKSKGFGF 441
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V F +PDDA ++V +N + F+ K YV AQ+K R+ +L+ +
Sbjct: 442 VCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQ 487
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
+L LA+A P QQ+ +LGE ++P + + D A K+TGMLLEM+ E+++L+E ALK
Sbjct: 658 SLQQQLASAPPPQQKQILGELIFPKIQAINADLAGKITGMLLEMENPELVNLIEDESALK 717
Query: 613 AKVAEAMEVLRNVAQQQAT 631
AKV EA+ V + Q++
Sbjct: 718 AKVDEALAVYDEYVKTQSS 736
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 233/542 (42%), Positives = 320/542 (59%), Gaps = 59/542 (10%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+FIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GY FV F+ +E+A AI+K+
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 189 NGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
NG+LLND++VFVG F ++ERE+ A F NVY+KN E + +LK++F +FG
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 119
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S VMRD+ GKS+ FGFV+++ +DA ++V+ +NGK+ K +VG+AQKK ER+ ELK
Sbjct: 120 SVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKR 179
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
KFEQ +E +++G+NLY+KNLDD+I D+KL++ FS FG+ITS KVM + +G S+G GF
Sbjct: 180 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 238
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRP-------PVGPR 419
V F + EEA+KA+TEMNG++V SKPLYVALAQRKEER+A L M+ P G
Sbjct: 239 VCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHVAGLRALPAGAI 298
Query: 420 MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGG 479
+ + P A G ++ P +P + QL MRPN P Q G + Q G
Sbjct: 299 LNQFQPAAGG-----YFVPEVPQAQGRPPYYTPNQLAQ-MRPN---PCWQQGGRLQGFQG 349
Query: 480 -----RRSGTGPMQ-----QAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
R+SG GP P P ++ + R+ P D AG L
Sbjct: 350 MPSALRQSGPGPALGHLAPTGNAPASRGLPTIIAQ-RVRSECPDRLAMDFGGAGAAQQGL 408
Query: 530 PGPYDIGGMP----------------------------FRDAAFSQPMQTGALASALANA 561
GG+P R + Q AS LA A
Sbjct: 409 TDSCQSGGVPTARPNLAPPATVAATAPRAVAPYKYASSVRSPHPTIQRQEPLTASMLAAA 468
Query: 562 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
P++Q+ +LGE L+PL+ + + A K+TGMLLE+ +E+LH+LE+PE+L +KV EA+ V
Sbjct: 469 RPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIGNSELLHMLETPESLCSKVDEAVAV 528
Query: 622 LR 623
L+
Sbjct: 529 LQ 530
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A +A+++
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEK 58
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D+ L + FS FG
Sbjct: 59 MNGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKT 118
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV DS G+SRG+GFV ++ E A A+D++NG ++ K +FVG +K ER++
Sbjct: 119 LSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELK 178
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 179 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 237
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F ++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 238 FVCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHV 287
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 119/210 (56%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S+ +S G+G+V+Y +
Sbjct: 88 AKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSRGFGFVSYEKHED 144
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N ++GK I R + I + N++IKNLD
Sbjct: 145 ANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 204
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 205 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFPSREEATKAVTEMNGRIVGSKP 263
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y+++++
Sbjct: 264 LYVALAQRKEER-----KAHLTNQYMQHVA 288
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/465 (43%), Positives = 288/465 (61%), Gaps = 16/465 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN++ L + F+ +G+V+S+RVCRD TRRSLGY YVN+ +A +AL+
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALET 76
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF ++G+PIRIM+S R P+ + AGN+F+KNL+ S+++KAL++ FS FGNI+SCK+A
Sbjct: 77 MNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLA 136
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D +S+GYGFVQF+ EE+A+ AID NG++ K+++VG F + ER A +T F
Sbjct: 137 VDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCF 196
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV+VKN ++ ++ L+++F +FG I S AV D DGK FGFV F++PDDA ++V+
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 279 LNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ D++ YV + QKK ER EL K++ E A ++EG NLY+KNLDD+I DD
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDD 316
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+ F E+G + S KVMR +G S+G GFV F +EA KA+T M GKMV +KPLYV++
Sbjct: 317 MLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSM 376
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRKE+R+A + M+ RM A G + Y ++ P + L
Sbjct: 377 AQRKEDRKAFIASQYMQRIASIRMQ-----ATSFGSGMTYMSDSTVVQPLFACYGRGTLQ 431
Query: 457 PGMRPNYFVPMVQPGQQNQRPGG-------RRSGTGPMQQAQQPI 494
M + V + PGQ + G +R G M QQ +
Sbjct: 432 RNMSNDVAVATMVPGQHSWLQMGDIDKSQTQRMAVGAMVYGQQNV 476
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A+++ +LY+ +LD +++D L F + G V+S +V R RS G+G+V ++ E
Sbjct: 296 AKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRS-DDGRSKGFGFVCFDKPDE 354
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A +A+ + + KP+ + + R
Sbjct: 355 AVKAMTAMKGKMVCTKPLYVSMAQR 379
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/470 (45%), Positives = 292/470 (62%), Gaps = 64/470 (13%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN A + RAL+EL
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 174
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D S+GYGFV ++ E+A AI +NGMLLN+K+VFVG + K++R S + K F
Sbjct: 175 DENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFT 234
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEA 278
N+YVKN+ TT+++ +++F ++G ITS ++ D + GK++ FGFVN+ +DA ++VE
Sbjct: 235 NIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEE 294
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD--- 335
LN F ++ YVG+AQKK+ERE EL+ ++E + +E + K+ G+NLYVKNL D I D
Sbjct: 295 LNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDEL 354
Query: 336 -------------------------------------------------DKLKELFSEFG 346
D + +L +
Sbjct: 355 RKVFEPYGAITSAKVMRDTLPADGSETPAKKEGDAEEKEAEPEKDGEKKDDVDDLSKKLD 414
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
T+T + + G S+G GFV FS +EA+KA+TE+N KMV KPLYVALAQRKE R+++
Sbjct: 415 TVT-IQGEKKLLGKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRKSQ 473
Query: 407 LQFS-QMRPPVGPRMPMYPP---VAPGLGQ-QLFYG-QGPPIIPPQPGFG 450
L+ S Q R V RM + P Q Q+F G G P++ P G G
Sbjct: 474 LEASIQARNQV--RMQQQATAGGIPPQFMQPQMFMGPNGQPMMMPAGGRG 521
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 67/239 (28%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++D D++ +LF + G + S + D + ++ G+G+VNY +A +A++
Sbjct: 234 TNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVE 293
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
ELN + G+ + + + R+ +RK N+++KNL ID+
Sbjct: 294 ELNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDE 353
Query: 144 LHDTFSTFGNILSCKVATDS---------------------------------------- 163
L F +G I S KV D+
Sbjct: 354 LRKVFEPYGAITSAKVMRDTLPADGSETPAKKEGDAEEKEAEPEKDGEKKDDVDDLSKKL 413
Query: 164 -----------LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
LG+S+G+GFV F N + A A+ +LN +++ K ++V RK+ R+S
Sbjct: 414 DTVTIQGEKKLLGKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRKS 472
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/369 (51%), Positives = 261/369 (70%), Gaps = 13/369 (3%)
Query: 6 VQPQAPVAVAAQPSPATNGIANNGGVGDA---------RQFVSTSLYVGDLDLSVNDSQL 56
V P +PVA A + A N A + G +A S SLYVG+LD SV ++ L
Sbjct: 15 VNPSSPVAGDANGT-AVNTSAGSAGATEAPTPTSAAPSAHQNSASLYVGELDPSVTEAML 73
Query: 57 YDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116
++LF+ +GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S
Sbjct: 74 FELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALEELNYTLIKGKPCRIMWS 133
Query: 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFD 176
RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++
Sbjct: 134 QRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 193
Query: 177 NEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDD 234
E+A +AI +NGMLLN+K+VFVG + K++R S + K F NVYVKN+ T+D+
Sbjct: 194 TAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNVYVKNIDLEVTDDE 253
Query: 235 LKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
+++F ++G ITS ++ D + GKS+ FGFVNF + AA++V+ LN K + ++ YVG+
Sbjct: 254 FRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGR 313
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK+ERE EL+ ++E + E K++G+NLYVKNL D + D+KL+++F+ FGTITS KV
Sbjct: 314 AQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLHDDVDDEKLRDMFAPFGTITSAKV 373
Query: 354 MRDPNGISR 362
MRD + R
Sbjct: 374 MRDTQPVGR 382
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 154/284 (54%), Gaps = 16/284 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++ + + A+
Sbjct: 56 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKAL 115
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ K + +R+ KT NV++KNL L F FG I
Sbjct: 116 EELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNI 171
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D +G SK +GFV+++ + A +++A+NG ++K+ +VG K +R
Sbjct: 172 LSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDR----M 227
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGS 364
KFE+ K N+YVKN+D ++DD+ +ELF ++G ITS + D G SRG
Sbjct: 228 SKFEEM------KANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGF 281
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
GFV F E A+KA+ E+N K + LYV AQ+K ER L+
Sbjct: 282 GFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELR 325
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 160/352 (45%), Gaps = 66/352 (18%)
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D + D + +L E +T K + G S+G GFV FS +EA+KA+TEMN KM+ K
Sbjct: 413 DEENKDGVDKLTKEMDKVT-IKGEQKILGKSKGFGFVCFSNPDEATKAVTEMNQKMMNGK 471
Query: 391 PLYVALAQRKEERRARLQFS-QMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGF 449
PLYVALAQRK+ R+++L+ + Q R + RM A G+ Q F + PQ F
Sbjct: 472 PLYVALAQRKDVRKSQLEATIQARNQI--RMQQAAAAA-GMPTQQF-------VQPQMFF 521
Query: 450 GYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSG---TGPMQ------QAQQPIPLMQP- 499
G QQ G R P P GGR +G PMQ AQQ P+ P
Sbjct: 522 GPGQQPFMGGRGQMPFPQGMPA------GGRGAGFPQGMPMQGGRGGPNAQQIPPMGMPF 575
Query: 500 --RMLPRGRIYRYPPGCNIPDVPVAGVPGG----------------------MLP----- 530
LP G +Y P GG +P
Sbjct: 576 PGAPLPGGIPPQYNPAYAQMLAAQQAAMGGRGGSRGPMPGMPGMPGMPQMAGQIPANNRG 635
Query: 531 GPYDIGGMPFRDAAFSQ----PMQT-----GALASALANASPEQQRTLLGENLYPLVDQL 581
GP + GG F P Q G SAL +A+P QQ+ +LGE LYP + +
Sbjct: 636 GPNNRGGANRNQPGFPSGRPAPGQAPTPGEGVDLSALQSAAPPQQKQMLGEALYPKIHAM 695
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGP 633
+ + A K+TGMLLEMD TE+++L AL+AKV EAM V + Q + GP
Sbjct: 696 QPELAGKITGMLLEMDNTELINLTSDENALRAKVDEAMGVYQEYIQSKGDGP 747
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 129/288 (44%), Gaps = 50/288 (17%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++DL V D + +LF + GQ+ S + D T +S G+G+VN+ A +A+D
Sbjct: 238 TNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVD 297
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
ELN G+ + + + R+ +RK N+++KNL +D++
Sbjct: 298 ELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLHDDVDDEK 357
Query: 144 LHDTFSTFGNILSCKVA--TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
L D F+ FG I S KV T +G+S + EE + + +
Sbjct: 358 LRDMFAPFGTITSAKVMRDTQPVGRSGSESPKKEGEEEEEEKKETEEKEPEKSGSD---- 413
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+E + DK T E D I GE I+ GKSK F
Sbjct: 414 -----EENKDGVDKL-------------TKEMDKVTIKGEQKIL----------GKSKGF 445
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
GFV F +PD+A ++V +N K + K YV AQ+K R+ +L+ +
Sbjct: 446 GFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLEATIQ 493
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/368 (51%), Positives = 270/368 (73%), Gaps = 2/368 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVGDLD V++ +L D+F+ MG +VSVR+CRD + +SL Y YVN+ +A++AL
Sbjct: 30 ALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALAC 89
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN T L GKP+RIM+S+RDP RK+G N+F+KNLD SI++ +L D F FGNILSCKVA
Sbjct: 90 LNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA 149
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
++ G+S+ +GFVQFD+++SA +A++ LN +L+ K++FV F++K ER+ +++T+F N
Sbjct: 150 EEN-GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTN 208
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VYVKNL E TED ++ F EFG + + +M+D +GKS+ FGFVNF+ PD+A ++VEALN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G K+ +VG+AQKK ER+ LK + ++ + K + NLYVKNLD S+ DDKL+E
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHE-KEMVNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS G ITS KVMR +G+S+G GFV FST+EEA KALT +NG ++ + LY+A+AQRK
Sbjct: 328 HFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 401 EERRARLQ 408
E+R+ L+
Sbjct: 388 EDRQRVLR 395
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 31/303 (10%)
Query: 18 PSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
P P G+AN L+V +LD S+N + L D+F + G ++S +V +
Sbjct: 109 PLPRKTGLAN--------------LFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--N 152
Query: 78 RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIK 133
+S +G+V +++ AT AL+ LN T L+GK + + R ++ N+++K
Sbjct: 153 GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVK 212
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NL + + + D FS FG + + + D G+SRG+GFV F++ + AK A++ LNG +L
Sbjct: 213 NLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAML 272
Query: 194 NDKQVFVGPFLRKQERE-----------STADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
K++FVG +K ER+ K + +N+YVKNL + +D L++ F
Sbjct: 273 GSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSC 332
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G ITS VMR G SK FGFV F ++A +++ LNG + Y+ AQ+K +R+
Sbjct: 333 GQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQR 392
Query: 303 ELK 305
L+
Sbjct: 393 VLR 395
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/329 (56%), Positives = 245/329 (74%), Gaps = 2/329 (0%)
Query: 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110
V ++ L++ F+ G V+S+RVCRDL RRSLGY YVN+ +A RALD +NF + G+P
Sbjct: 4 VTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRP 63
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGY 170
IRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FGNILSCKVATD S+GY
Sbjct: 64 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGY 123
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT--RFNNVYVKNLSE 228
GFV F+ EE+A +AI K+NGMLLN ++VFVG F+ + ERE + RF NVY+KN +
Sbjct: 124 GFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGD 183
Query: 229 TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
++ L+++F ++G ITS VM D GK K FGFV+F+DP++A ++V LN K+ + K
Sbjct: 184 DLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKV 243
Query: 289 WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI 348
YVG+AQKK ER ELK +FEQ + ++++G+NLYVKNLDDSI D++L++ F+ FGTI
Sbjct: 244 LYVGRAQKKSERAAELKRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLRKEFTPFGTI 303
Query: 349 TSCKVMRDPNGISRGSGFVAFSTAEEASK 377
TS KVM D NG S+G GFV FS EEA+K
Sbjct: 304 TSAKVMTDSNGRSKGFGFVCFSAPEEATK 332
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 152/273 (55%), Gaps = 17/273 (6%)
Query: 144 LHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L + FS+ G +LS +V D + + S GY +V F A+ A+D +N ++ + + +
Sbjct: 9 LFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRPIRIMW 68
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+R+ + K+ NV++KNL ++ + F FG I S V D + SK +G
Sbjct: 69 ----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYG 124
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
FV+F+ + A +++ +NG + ++ +VGK + ERE +L K A +F +
Sbjct: 125 FVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQK--------ARRF--M 174
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+Y+KN D + D+KL+E+F ++G ITS KVM D G +G GFV+F E A KA+ ++
Sbjct: 175 NVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDL 234
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
N K + K LYV AQ+K ER A L+ F Q++
Sbjct: 235 NNKELNGKVLYVGRAQKKSERAAELKRRFEQLK 267
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 21/253 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ +YD F+ G ++S +V D + S GYG+V++ A A+ +
Sbjct: 82 NVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEES-NSKGYGFVHFETEEAANNAIQK 140
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R ++ G N++IKN +D++ L + F +G I
Sbjct: 141 VNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGDDLDDEKLREMFEKYGKI 200
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
S KV D G+ +G+GFV F++ E+A+ A++ LN LN K ++VG +K ER +
Sbjct: 201 TSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYVGRAQKKSERAAEL- 259
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+YVKNL ++ ++ L+K F FG ITS VM D++G+SK F
Sbjct: 260 KRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAKVMTDSNGRSKGF 319
Query: 262 GFVNFDDPDDAAR 274
GFV F P++A +
Sbjct: 320 GFVCFSAPEEATK 332
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S++D +L F G + S +V D S RS G+G+V ++A EAT
Sbjct: 273 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAKVMTD-SNGRSKGFGFVCFSAPEEAT 331
Query: 96 R 96
+
Sbjct: 332 K 332
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/375 (50%), Positives = 260/375 (69%), Gaps = 4/375 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +A
Sbjct: 105 KYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQ 164
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ALD +NF + GKPIR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG IL
Sbjct: 165 KALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 224
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 225 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 283
Query: 216 --TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVYVKN + ++ LK++F ++G S VM D+ GKSK FGFV+FD + A
Sbjct: 284 KVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAK 343
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++VE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G+ LY+KNLDD+I
Sbjct: 344 KAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTI 403
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+KL FS FG+I+ K+MR+ G S+G G + FS+ EEA+KA+ EMNG+++ SKPLY
Sbjct: 404 DDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLY 462
Query: 394 VALAQRKEERRARLQ 408
+ALAQR ER+ L
Sbjct: 463 IALAQRPXERKNFLH 477
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 160/289 (55%), Gaps = 18/289 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 169 TMNFDMIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 224
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F + + A R++E +NG D +VG+ + + +RE EL+
Sbjct: 225 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 283
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K E N+YVKN D + D++LKE+FS++G S KVM D G S+G GF
Sbjct: 284 KVN----------EFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGF 333
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
V+F + E A KA+ EMNGK V + L+V AQ+K ER+A L+ F Q++
Sbjct: 334 VSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLK 382
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ LY+ +LD +++D +L+ F+ G + V++ R+ RS G+G + +++ EA
Sbjct: 387 RRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEG--RSKGFGLICFSSPEEA 444
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
T+A+ E+N L KP+ I + R P RK+
Sbjct: 445 TKAMAEMNGRILGSKPLYIALAQR-PXERKN 474
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/321 (57%), Positives = 242/321 (75%), Gaps = 4/321 (1%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 61 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +DA ++VE
Sbjct: 120 TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 180 MNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 240 RREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 399 RKEERRARLQFSQMRPPVGPR 419
RKEER+A L M+ G R
Sbjct: 299 RKEERKAHLTNQYMQRVAGMR 319
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 167/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A +A+++
Sbjct: 29 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEK 86
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D+ L + FS FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKT 146
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV DS G+S+G+GFV ++ E A A++++NG ++ K +FVG +K ER++
Sbjct: 147 LSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELK 206
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L++ F FG ITS VM + DG+SK FG
Sbjct: 207 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFG 265
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 315
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 118/210 (56%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S+ +S G+G+V+Y +
Sbjct: 116 AKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHED 172
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 173 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 232
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 233 TIDDEKLRREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 291
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 292 LYVALAQRKEER-----KAHLTNQYMQRVA 316
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 502 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 561
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 562 VDEAVAVLQ 570
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/329 (57%), Positives = 248/329 (75%), Gaps = 4/329 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V + L++ F+ G V+S+RVC+D+ TRRSLGY YVN+ +A RALD
Sbjct: 14 SLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDT 73
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 74 MNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 133
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +IDK+NGMLLN K+VFVG F+ ++ERE +K + F
Sbjct: 134 QDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELGEKAKLF 193
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E T+D LK++F ++G ITS V+ + D KS+ FGFV F+DP+ A R+VE
Sbjct: 194 TNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFVAFEDPEAAERAVED 253
Query: 279 LNGKK-FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K+ YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D++
Sbjct: 254 LNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLKMERMNRYQGVNLYVKNLDDTIDDER 313
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGF 366
L++ FS FGTITS KVM + S+G GF
Sbjct: 314 LRKEFSPFGTITSAKVMLEERR-SKGFGF 341
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 162/302 (53%), Gaps = 21/302 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 14 SLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDT 73
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N L + + + +R+ + K+ NV++KNL + + F FG I S
Sbjct: 74 MNFDTLKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 129
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V +D G SK +GFV+F+ + A +S++ +NG + K+ +VGK + ERE EL
Sbjct: 130 CKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELG-- 187
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
E A F N+YVKN + +DD LKE+F ++G ITS V+ + + SRG GFV
Sbjct: 188 ------EKAKLF--TNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFV 239
Query: 368 AFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYP 424
AF E A +A+ ++NGK ++ K LYV AQ+K ER+ L +F Q++ RM Y
Sbjct: 240 AFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLKM---ERMNRYQ 296
Query: 425 PV 426
V
Sbjct: 297 GV 298
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/319 (56%), Positives = 244/319 (76%), Gaps = 2/319 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A+ AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 174 VAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+S T+D+ +++F G +TS+++ R+ DGKS+ FGFVNF + AA++V
Sbjct: 234 NFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAV 293
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K +E YVG+AQKK+ERE EL+ +E + E A K++G+NLY+KNLDD + DD
Sbjct: 294 EELNNKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDD 353
Query: 337 KLKELFSEFGTITSCKVMR 355
KL+ +F+EFG ITS KVMR
Sbjct: 354 KLRIMFAEFGPITSAKVMR 372
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 156/285 (54%), Gaps = 15/285 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G + S +V D++ + S GY +V +++ + A+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 114 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 169
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D +G SK +GFV+++ + A ++++ +NG ++K+ YVG K +R+
Sbjct: 170 LSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 225
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+ ++DD+ +ELF G +TS + R+ +G SRG G
Sbjct: 226 SKFEEM------KANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFG 279
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
FV F+T E A+KA+ E+N K + + LYV AQ+K ER L+ S
Sbjct: 280 FVNFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKHEREEELRKS 324
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 133/304 (43%), Gaps = 43/304 (14%)
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMP--- 421
GFV FS ++A+KA+ EMN +M+ KPLYVALAQ R ++ SQ+ + R
Sbjct: 430 GFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQ-----RKDVRKSQLEASIQARNQMRM 484
Query: 422 -------------MYPPVAPGLGQQL-FYGQGPPIIP-PQ-------------PGFGYQQ 453
M PPV GQQ F QG +P PQ PG+ Q
Sbjct: 485 QQAAAAAGMPQQFMQPPVFYAAGQQPGFIPQGGRGMPFPQPGMGMPGGRPGQFPGYPQQG 544
Query: 454 QLVPG--MRPN-YFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRY 510
M PN Y +P P Q Q PG + Q Q + +
Sbjct: 545 GRGGPQQMPPNMYNMPGQFPPQFGQ-PGTPQFMAAMQQAQQAALGGGRGAPQGGRGNAGM 603
Query: 511 PPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQP--MQTGALASALANASPEQQRT 568
PP +P P GGM G ++P AL + ++ A P QQ+
Sbjct: 604 PPNA-VPGFPPNNRQGGMGRGANRGANNANNSQQAARPGDNNISALQAQISGAPPAQQKQ 662
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
+LGE ++P + + + A K+TGMLLEMD +E+++L+E ALK+KV EA+ V +
Sbjct: 663 MLGEMIFPKIQAINGELAGKITGMLLEMDNSELINLIEDDAALKSKVDEALAVYDEYVKT 722
Query: 629 QATG 632
Q G
Sbjct: 723 QDGG 726
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/374 (50%), Positives = 260/374 (69%), Gaps = 4/374 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 103 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLAD 162
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIR+M+S RD +RKSG GN+FIKNLD+SIDNK L++ FS FG
Sbjct: 163 AQRALDTMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 222
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 223 ILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAEL 281
Query: 214 --DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F NVY+KN + ++ LK++F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 282 RNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 341
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G+ LY+KNLDD
Sbjct: 342 AKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDD 401
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL FS FG+I+ K+MR+ G S+G G + FS+ EEA+KA+ EMNG+++ SKP
Sbjct: 402 TIDDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKP 460
Query: 392 LYVALAQRKEERRA 405
LY+ALAQ+ ER A
Sbjct: 461 LYIALAQKPXERNA 474
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 162/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 110 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALDT 169
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + K + L +R++ K+ NV++KNL + L + F FG I S
Sbjct: 170 MNFDTIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILS 225
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G S+ + FV+F + A R++E +NG D +VG+ + + +RE EL+ K
Sbjct: 226 SKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNK 284
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A++F N+Y+KN D + D++LKE+FS++G S KVM D +G S+G GFV
Sbjct: 285 --------ANEF--TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFV 334
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNGK + + L+V AQ+K ER+A L+ F Q++
Sbjct: 335 SFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLK 382
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 104/212 (49%), Gaps = 26/212 (12%)
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKC 260
P + + + + A K R ++YV +L TED L K F G + S + RD +S
Sbjct: 92 PAVGRSKEMNVAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLG 151
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETAD 317
+ +VNF DA R+++ +N FD +KGK S ++
Sbjct: 152 YAYVNFLKLADAQRALDTMN---FD-----------------TIKGKPIRLMWSQRDAYL 191
Query: 318 KFEGL-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
+ G+ N+++KNLD SI + L E FS FG I S KVM D G SRG FV F A
Sbjct: 192 RKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAAD 250
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
+A+ EMNG ++ L+V + +++R A L+
Sbjct: 251 RAIEEMNGALLKDCRLFVGRFKNRKDREAELR 282
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 231/531 (43%), Positives = 309/531 (58%), Gaps = 71/531 (13%)
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
IDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++V
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 59
Query: 199 FVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
FVG F ++ERE+ A F NVY+KN E ++ LK++FG+FG S VM D G
Sbjct: 60 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 119
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
KSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++
Sbjct: 120 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 179
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
+++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+
Sbjct: 180 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 238
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR-------------------PPVG 417
KA+TEMNG++V +KPLYVALAQRKEER+A L M+ PP G
Sbjct: 239 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 298
Query: 418 ----------PRMPMYPP------------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQ 453
R YPP A G F I P P+P F
Sbjct: 299 YFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS--- 355
Query: 454 QLVPGMRP-NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPP 512
MRP + VP V Q+ + G P A P + R +P+ Y+Y
Sbjct: 356 ----TMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAA 406
Query: 513 GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGE 572
G P + P + P A Q AS LA A P++Q+ +LGE
Sbjct: 407 GVRNPQQHLNAQPQVTMQQP-----------AVHVQGQEPLTASMLAFAPPQEQKQMLGE 455
Query: 573 NLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 456 RLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 506
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 160/280 (57%), Gaps = 21/280 (7%)
Query: 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110
+++ LYD F+ G ++S +V D + S GYG+V++ A RA++++N LN +
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 58
Query: 111 IRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL 164
+ + + R + GA N++IKN + +D++ L + F FG LS KV TD
Sbjct: 59 VFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES 118
Query: 165 GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK--------- 215
G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++ +
Sbjct: 119 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 178
Query: 216 -TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FGFV F P++A
Sbjct: 179 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEA 237
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 238 TKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 277
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S +S G+G+V++ +
Sbjct: 78 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 134
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 135 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 194
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 195 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 253
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 254 LYVALAQRKEERQA-----HLTNQYMQRMA 278
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/244 (70%), Positives = 214/244 (87%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDL SV D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVNYN +A R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP+ RKSG GNIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ATD G+SRGYGFVQF+ +ESA+SAIDKLNGML+NDK+VFVGPF+RKQ+RE+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F+NVYVKNLS+T T+D+LK++FG++G ITS VMRD+DGKS+CFGFVNF++ D AA++V
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 277 EALN 280
+ LN
Sbjct: 272 QELN 275
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 150/264 (56%), Gaps = 17/264 (6%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAI 185
A ++++ +L +S+ + L D FS G ++S +V D + +S GY +V ++N+ A A+
Sbjct: 34 ATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARAL 93
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+ LN +N K + + R+ ++ K+ N+++KNL ++ L F FG I
Sbjct: 94 ELLNFTPINGKPIRI----MYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNI 149
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S + D G+S+ +GFV F+ + A +++ LNG +DK+ +VG +K +RE
Sbjct: 150 LSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRE---- 205
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
+ + N+YVKNL D+++DD+LKE+F ++GTITS VMRD +G SR G
Sbjct: 206 --------NVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFG 257
Query: 366 FVAFSTAEEASKALTEMNGKMVVS 389
FV F A+ A++A+ E+N +V S
Sbjct: 258 FVNFENADAAAQAVQELNDGVVSS 281
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 20/196 (10%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSKCFGFVNFDDPDDAARSVEAL 279
+YV +L E+ + L +F + G + S V RD + KS + +VN+++ DAAR++E L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + K + + + G N+++KNLD SI + L
Sbjct: 97 NFTPINGKPIRIMYSNRDPSSRKSGTG----------------NIFIKNLDKSIDNKALY 140
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ F FG I SCK+ DP+G SRG GFV F E A A+ ++NG ++ K ++V R
Sbjct: 141 DTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVR 200
Query: 400 KEERR---ARLQFSQM 412
K++R + ++FS +
Sbjct: 201 KQDRENVSSNIKFSNV 216
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASK 377
F +LYV +L +S+ D +L ++FS+ G + S +V RD N S G +V ++ +A++
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERR 404
AL +N + KP+ + + R R
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSR 118
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/377 (50%), Positives = 255/377 (67%), Gaps = 31/377 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A+ F SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVNY +
Sbjct: 6 AQNFAMASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPD 65
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF P+ G+PIRIM+S RDP++R+SG GN+FIKNLDK ID+KA++DTFS FGN
Sbjct: 66 AERALDTMNFDPVFGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFSNFGN 125
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL-RKQEREST 212
ILSCKVATD G S+GYG +VG F+ R Q
Sbjct: 126 ILSCKVATDENGVSKGYG---------------------------YVGKFIPRAQRMREI 158
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ TR F NVYVKN E T+ L +F +FG I S VM++ D KSK FGFV+F++P+D
Sbjct: 159 GETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKE-DDKSKGFGFVSFENPED 217
Query: 272 AARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A +V+ +N + K+ YVG+AQKK ER+ ELK ++E E ++EG+NLY+KNLD
Sbjct: 218 AEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKNLD 277
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DS+ D +L++ F +FG ITS KVM D G S+G GFV FS+ +EA++A++EMN + + +K
Sbjct: 278 DSVDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLGNK 337
Query: 391 PLYVALAQRKEERRARL 407
PLYVALAQRKE+R+A+L
Sbjct: 338 PLYVALAQRKEDRKAQL 354
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 47/60 (78%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
+S L++A P++Q+ +LGE L+PL+ ++ D A K+TGMLLEMD E+L++LESP+ L AK
Sbjct: 561 SSMLSSAPPQEQKQMLGERLFPLIMEIHKDLAGKITGMLLEMDNGELLNMLESPDLLNAK 620
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 186/373 (49%), Positives = 258/373 (69%), Gaps = 4/373 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 197 AAKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVAD 256
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FSTFG
Sbjct: 257 AQKALDTMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGK 316
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G S+GY FV F N+ +A AI+++NG LL + +VFV F +++RES
Sbjct: 317 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESEL 375
Query: 214 DK--TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ F NVY+KN + + LK++F ++G S VM D+ GKSK FGFV+F +
Sbjct: 376 KNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEA 435
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +VE +NGK + + +VG+AQKK ER+ ELK FEQ +E + G+ LY+KNLDD
Sbjct: 436 AKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDD 495
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ F+ FG+I+ KVM++ G S+G G + FS+ EEA KA+TEMNG+++ SKP
Sbjct: 496 TIDDEKLRKEFASFGSISRVKVMQE-EGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKP 554
Query: 392 LYVALAQRKEERR 404
L +ALAQR EER+
Sbjct: 555 LNIALAQRNEERK 567
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 163/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F + A+ A+D
Sbjct: 204 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALDT 263
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ K+ NV++KNL ++ L + F FG I S
Sbjct: 264 MNFDVIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILS 319
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NG + +V + + + +RE ELK K
Sbjct: 320 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNK 378
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN D + D +LKE+FS++GT S KVM D +G S+G GFV
Sbjct: 379 --------ASEFT--NVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFV 428
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F++ E A A+ EMNGK + + ++V AQ+K ER+A L+ F Q+R
Sbjct: 429 SFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLR 476
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 109/192 (56%), Gaps = 20/192 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR-AL 98
T++Y+ + ++D +L ++F++ G +SV+V D S+ +S G+G+V++ A+HEA + A+
Sbjct: 383 TNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTD-SSGKSKGFGFVSF-ASHEAAKNAV 440
Query: 99 DELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNK 142
+E+N +NG+ I ++ R R+ ++IKNLD +ID++
Sbjct: 441 EEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDE 500
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L F++FG+I KV + G+S+G+G + F + E A A+ ++NG +L K + +
Sbjct: 501 KLRKEFASFGSISRVKVMQEE-GRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIAL 559
Query: 203 FLRKQERESTAD 214
R +ER++ D
Sbjct: 560 AQRNEERKTCFD 571
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 26/203 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L K F G + S + RD +S + +VNF
Sbjct: 195 NVAAKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHV 254
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 255 ADAQKALDTMN---FD-----------------VIKGKSIRLMWSQRDAYLRKSGIGNVF 294
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNG
Sbjct: 295 IKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGT 353
Query: 386 MVVSKPLYVALAQRKEERRARLQ 408
++ + ++V+ + +++R + L+
Sbjct: 354 LLKNCRVFVSRFKSRKDRESELK 376
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 367 bits (943), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 192/392 (48%), Positives = 258/392 (65%), Gaps = 9/392 (2%)
Query: 12 VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV 71
+A +P P+ N + + D + F S SLYVGDL V ++ LY++FN +G V S+RV
Sbjct: 1 MASTVKPVPSENLMM--MPMRDTQVFSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRV 58
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD TR+SLGY YVNY + +A AL+ LN+ + G P RIM+S RDP++R+SGAGNIF
Sbjct: 59 CRDSVTRKSLGYAYVNYYSTQDAQEALENLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIF 118
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
+KNLDKSID K+L+DTFS FG ILSCKVA D+ G S+ YGFV ++NEESA+ AI+K+NGM
Sbjct: 119 VKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGM 178
Query: 192 LLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
L+ K+V V PFLRKQ+RES + F N+YV+N E+ L++ ++G ITS +M
Sbjct: 179 LIGGKRVEVAPFLRKQDRES---EEVFTNLYVRNFPADWDEEALRQFLEKYGEITS--MM 233
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE--WYVGKAQKKYEREMELKGKFE 309
D K + F FVN+ +P+ A V LN K ++ V Q K +R+ L+ +F
Sbjct: 234 LKEDSKGRRFAFVNYKEPEVAKEVVNTLNDLKLEESSEPLLVCPHQDKAKRQNLLRAQFN 293
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
S DK NLY+KNLDDS D+ L ELF FGTITS KVM D N SRG GFV F
Sbjct: 294 NSTMAQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVCF 353
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
+ +EA+KA+ M+ K+V KPLYV LA++++
Sbjct: 354 TNPQEATKAIAAMHLKLVKGKPLYVGLAEKRD 385
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 25/198 (12%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L ++F G + S V RD+ KS + +VN+ DA ++E
Sbjct: 28 SLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQEALEN 87
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKG---KFEQSLKETADKFEGL-NLYVKNLDDSIS 334
LN +E+KG + S ++ + + G N++VKNLD SI
Sbjct: 88 LN--------------------YIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSID 127
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
L + FS FG I SCKV D +G S+ GFV + E A +A+ ++NG ++ K + V
Sbjct: 128 TKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEV 187
Query: 395 ALAQRKEERRARLQFSQM 412
A RK++R + F+ +
Sbjct: 188 APFLRKQDRESEEVFTNL 205
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
Q+ ++GE L+P++ + D A K+TGM+LE+D E+L LLE + LKAK+ EA++VL+
Sbjct: 601 QKQMIGERLFPIIARDNPDLAGKITGMMLEIDNHELLQLLEDNDQLKAKIDEAIKVLK 658
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 180/317 (56%), Positives = 237/317 (74%), Gaps = 3/317 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK+IF ++G S VM D GKSK FGFV+F+ +DA R+V+
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD + D++
Sbjct: 250 EMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDER 309
Query: 338 LKELFSEFGTITSCKVM 354
L++ FS FGTITS KVM
Sbjct: 310 LRKEFSPFGTITSAKVM 326
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 168/302 (55%), Gaps = 21/302 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + V + +R+ + K+ N+++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + + ERE E+
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ + E N+Y+KN + + D+KLKE+F ++G S +VM D +G S+G GF
Sbjct: 186 RAK----------EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYP 424
V+F E+A +A+ EMNGK + K +YV AQ+K ER+ L +F QM+ RM Y
Sbjct: 236 VSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQ---DRMTRYQ 292
Query: 425 PV 426
V
Sbjct: 293 GV 294
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 366 bits (939), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 188/371 (50%), Positives = 248/371 (66%), Gaps = 7/371 (1%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
D + F S SLYVGDL V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY +
Sbjct: 20 DTQVFSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQ 79
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+A AL+ LN+ + G P RIM+S RDP++R+SGAGNIF+KNLDKSID K+L+DTFS FG
Sbjct: 80 DAEAALESLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFG 139
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
ILSCKVA D+ G S+ YGFV ++NEESA+ AI+K+NGML+ K+V V PFLRKQ+RE
Sbjct: 140 PILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDREG- 198
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+ F N+YV+N E+ L++ ++G ITS +M D K + F FVN+ +P+ A
Sbjct: 199 --EEVFTNLYVRNFPADWNEEALRQFLEKYGEITS--MMLKEDSKGRRFAFVNYKEPEVA 254
Query: 273 ARSVEALNGKKFDDKE--WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
V LN K D+ V Q K +R+ L+ +F S DK NLY+KNLD
Sbjct: 255 KEVVNTLNDLKLDESSEPLLVCPHQDKAKRQNLLRAQFNNSSMGQEDKRVTSNLYIKNLD 314
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DS D+ L ELF FGTITS KVM D N SRG GFV F+ +EA+KA+ M+ K+V K
Sbjct: 315 DSFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGK 374
Query: 391 PLYVALAQRKE 401
PLYV LA++++
Sbjct: 375 PLYVGLAEKRD 385
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 25/198 (12%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L ++F G + S V RD+ KS + +VN+ DA ++E+
Sbjct: 28 SLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALES 87
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKG---KFEQSLKETADKFEGL-NLYVKNLDDSIS 334
LN +E+KG + S ++ + + G N++VKNLD SI
Sbjct: 88 LN--------------------YIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSID 127
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
L + FS FG I SCKV D +G S+ GFV + E A +A+ ++NG ++ K + V
Sbjct: 128 TKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEV 187
Query: 395 ALAQRKEERRARLQFSQM 412
A RK++R F+ +
Sbjct: 188 APFLRKQDREGEEVFTNL 205
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
Q+ ++GE L+P++ + D A K+TGM+LE+D E+L LLE + LKAK+ EA++VL+
Sbjct: 604 QKQMIGERLFPIIARDNPDLAGKITGMMLEIDNHELLQLLEDNDQLKAKIDEAIKVLK 661
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
NN +G + V+++LY+ +LD S +D L +LF G + S +V D + S G+G+V
Sbjct: 293 NNSSMGQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLD-ANNHSRGFGFV 351
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRI 113
+ EAT+A+ ++ + GKP+ +
Sbjct: 352 CFTNPQEATKAIAAMHLKLVKGKPLYV 378
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 184/368 (50%), Positives = 258/368 (70%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAEL 182
Query: 214 DK--TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F NVY+KN + ++ LK++F ++G S VMRD+ GKSK FGFV+FD +
Sbjct: 183 QNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G+ LY+KNLD+
Sbjct: 243 AKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDE 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ EEA+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSPEEATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQ+
Sbjct: 362 LNIALAQK 369
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 165/289 (57%), Gaps = 18/289 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N L+ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F + A R++E +NG D +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A++F N+Y+KN D + D++LKE+FS++G S KVMRD +G S+G GF
Sbjct: 185 K--------ANEFT--NVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
V+F + E A KA+ EMNGK + + L+V AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK 283
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 225/529 (42%), Positives = 312/529 (58%), Gaps = 68/529 (12%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP+ R+SG GNIFIKNL +IDNKALHDTFS FG ILSCKVATD +GQS+ +GFV
Sbjct: 1 MWSQRDPSSRRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFV 60
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTT 231
++ E+A++AI+ +NGMLLND++V+VG + K++RES + K + N+YVKN+ +
Sbjct: 61 HYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFS 120
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+++ +K+F FG ITS + +D DGKSK FGFVN++ + A ++VE LN K+ + ++ YV
Sbjct: 121 DEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYV 180
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQKK ER ELK ++E + E K++G+NL+VKNLDDSI +KL+E F FG+ITS
Sbjct: 181 GRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSA 240
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQ 411
KVM D G S+G GFV FS+ EEA+KA+TEMN +M++ KPLYVALAQRK+ RR++L+ Q
Sbjct: 241 KVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLE-QQ 299
Query: 412 MRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPG 471
++ RM Q G P F+P + G
Sbjct: 300 IQARNQMRM-------------------------------QNAAASGGIPGQFIPPMFYG 328
Query: 472 QQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYP-------PGCNIPDVPVAGV 524
QQ P P + P P P+M+ R R ++P PG N VPV G+
Sbjct: 329 QQGFFP--------PNGRGNAPFPGPNPQMMMR-RGQQFPGPEQWPRPGPNGQPVPVYGI 379
Query: 525 PGGMLPGPYDIGGMPFRDAAF----------SQPMQTGALASALANASPEQQRTLLGENL 574
P P D G P R Q LA+ +ANA P+QQ+ +LGE L
Sbjct: 380 P----PQFQDFNGQPMRQQQRGGYYPNRNQNKGGRQQKDLAAIIANAPPDQQKRILGEEL 435
Query: 575 YPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
YP + E + A K+TGM+L ++ E+L LLE E +A+
Sbjct: 436 YPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLEDDELFNNHFEDAL 484
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 156/283 (55%), Gaps = 19/283 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +L ++++ L+D F+ G+++S +V D +S +G+V+Y A A A++
Sbjct: 16 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAAIEN 74
Query: 101 LNFTPLNGKPIRI--MYSYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + S +D + K+ NI++KN+D ++ F FG I
Sbjct: 75 VNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFSDEEFEKLFVPFGTI 134
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER----- 209
S + D G+S+G+GFV ++ ESA A+++LN +N ++++VG +K+ER
Sbjct: 135 TSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVGRAQKKRERMEELK 194
Query: 210 ---EST----ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
EST K + N++VKNL ++ + L++ F FG ITS VM D GKSK FG
Sbjct: 195 KQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGKSKGFG 254
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
FV F P++A +++ +N + K YV AQ+K R +L+
Sbjct: 255 FVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLE 297
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++DL +D + LF G + S+ + +D + S G+G+VNY A +A++
Sbjct: 108 TNIYVKNIDLEFSDEEFEKLFVPFGTITSIYLEKDQDGK-SKGFGFVNYETHESAVKAVE 166
Query: 100 ELNFTPLNGKPIRI----------------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN +NG+ I + S R + K N+F+KNLD SID++
Sbjct: 167 ELNDKEINGQKIYVGRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEK 226
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F FG+I S KV D G+S+G+GFV F + E A AI ++N ++ K ++V
Sbjct: 227 LEEEFKPFGSITSAKVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALA 286
Query: 204 LRKQERESTADK 215
RK R S ++
Sbjct: 287 QRKDVRRSQLEQ 298
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD S++ +L + F G + S +V D +S G+G+V +++ EAT
Sbjct: 207 KYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVD-EAGKSKGFGFVCFSSPEEAT 265
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
+A+ E+N + GKP+ + + R +R+S
Sbjct: 266 KAITEMNQRMILGKPLYVALAQRK-DVRRS 294
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 208/441 (47%), Positives = 275/441 (62%), Gaps = 65/441 (14%)
Query: 30 GVGDA-RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GVG A F S SLYVGDL VN+ LY++FN +G V S+RVCRD TRRSLGY YVNY
Sbjct: 2 GVGGAPNSFTSASLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNY 61
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ A +A RALD +NFT + GKP RIM+S RDP++R+SG GNIF+KNL + IDNK L+DTF
Sbjct: 62 HQAADAERALDSMNFTDIKGKPCRIMWSQRDPSVRRSGVGNIFVKNLHEGIDNKQLYDTF 121
Query: 149 STFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
S FGNILSCKV D G S+GYG+V ++ E+A SAIDKL+GML++ K+V VG F+R
Sbjct: 122 SLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVFMR-- 179
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV----------------- 250
R++ D+ + N+++KN+ + L+ F EFG I S +V
Sbjct: 180 -RDTRPDQEVYTNLFIKNMPYEWDDKRLEAEFAEFGEIVSASVKMGKRKKFAKKGKKAEA 238
Query: 251 MRDADGK----------------------------------SKCFGFVNFDDPDDAARSV 276
+D D K S FGFVNF + AA +V
Sbjct: 239 KKDEDDKEDGAEDKPAEEEKPEEEEAKPAEEEAKPESTEPESLGFGFVNFATHEAAAAAV 298
Query: 277 EALNGKKFD--------DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
EA+N K + +K +VG+AQKK ER+ EL+ K+E E KF+G+NLYVKN
Sbjct: 299 EAMNDKVYKVTEDGDEVEKALFVGRAQKKSERQAELRSKYEAEKMERIAKFQGVNLYVKN 358
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV 387
LDD+++DD L++ F GTITS K+MRD SRG GFV FST E+A++A+ EM+GK+V
Sbjct: 359 LDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEMSGKIV 418
Query: 388 VSKPLYVALAQRKEERRARLQ 408
KP+YV+LAQR+E RRA+L+
Sbjct: 419 AGKPIYVSLAQRREVRRAQLE 439
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 56/67 (83%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
+ALA+A+PE Q+ ++GE LYPL+ Q + D A K+TGMLLEMD +E+LHLLESPEAL AK+
Sbjct: 616 AALASATPEIQKNMIGERLYPLIHQTQPDLAGKITGMLLEMDNSELLHLLESPEALGAKI 675
Query: 616 AEAMEVL 622
EA++VL
Sbjct: 676 QEALQVL 682
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 21/163 (12%)
Query: 166 QSRGYGFVQFDNEESAKSAIDKLNGMLLN--------DKQVFVGPFLRKQEREST----- 212
+S G+GFV F E+A +A++ +N + +K +FVG +K ER++
Sbjct: 279 ESLGFGFVNFATHEAAAAAVEAMNDKVYKVTEDGDEVEKALFVGRAQKKSERQAELRSKY 338
Query: 213 -ADK----TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFV 264
A+K +F N+YVKNL + T+D L+ FG G ITS +MRDA S+ FGFV
Sbjct: 339 EAEKMERIAKFQGVNLYVKNLDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFV 398
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
F P+DA R+V ++GK K YV AQ++ R +L+ +
Sbjct: 399 CFSTPEDATRAVNEMSGKIVAGKPIYVSLAQRREVRRAQLEAQ 441
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 176/370 (47%), Positives = 251/370 (67%), Gaps = 4/370 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDLD V + L+ F+ G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 142 AAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLAD 201
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF L G+P+R+M+S RD +RKSG GN+FIKNLD+S+D+KAL + FS FG
Sbjct: 202 AQRALDTMNFDVLRGRPLRLMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGK 261
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-- 211
ILS KV +D G SRGY FV F + +A AI+ +NG L ++FVG F +Q RE+
Sbjct: 262 ILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAEL 320
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ F N+Y+KN + L+ +F E+G S VM DA G+S+ FGFV+F+ +
Sbjct: 321 RSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVSFESHEA 380
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+VEALNG++ D + +VG+AQ+K ER+ EL+ FEQ ++ + +G LYVKNLDD
Sbjct: 381 ARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDD 440
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
++ +D+L+ FS FG ++ K+MR+ G S+G G + FS+A+EA++AL EMNG+++ SKP
Sbjct: 441 AVDEDRLRREFSGFGAVSRVKIMRE-EGRSKGFGLICFSSADEAARALAEMNGRVLGSKP 499
Query: 392 LYVALAQRKE 401
L +ALAQ +
Sbjct: 500 LSIALAQSRR 509
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 156/281 (55%), Gaps = 16/281 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +LD + AL FS G +LS ++ D L + S GY +V F A+ A+D
Sbjct: 149 SLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQRALDT 208
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N +L + + L +R++ K+ NV++KNL + + L + F FG I S
Sbjct: 209 MNFDVLRGRPLR----LMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKILS 264
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ V+ D G S+ + FV+F + A R++E +NG + +VG+ Q + RE EL+ +
Sbjct: 265 SKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAELRSR 323
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F NLY+KN + D +L+ +FSE+G S KVM D +G SRG GFV
Sbjct: 324 --------AGEFT--NLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFV 373
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
+F + E A +A+ +NG+ V +PL+V AQRK ER+A L+
Sbjct: 374 SFESHEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELR 414
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPD 270
A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 141 VAAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLA 200
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG---KFEQSLKETADKFEGL-NLYV 326
DA R+++ +N FD L+G + S ++ + G+ N+++
Sbjct: 201 DAQRALDTMN---FD-----------------VLRGRPLRLMWSQRDAHLRKSGVGNVFI 240
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLD S+ D L E FS FG I S KV+ D G SRG FV F A +A+ MNG
Sbjct: 241 KNLDRSVDDKALFERFSAFGKILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQ 299
Query: 387 VVSKPLYVALAQRKEERRARLQ 408
+ L+V Q ++ R A L+
Sbjct: 300 LRGCRLFVGRFQSRQAREAELR 321
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 364 bits (934), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 188/374 (50%), Positives = 249/374 (66%), Gaps = 7/374 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F S SLYVGDL V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY + +A
Sbjct: 24 FSSASLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEA 83
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ + G P RIM+S RDP++RKSGAGNIF+KNLDKSID K+L+DTF+ FG ILS
Sbjct: 84 ALENLNYIEIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSIDTKSLYDTFAHFGTILS 143
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G SR YGFV +++EESA+ AI+K+NGML+ K+V V PFLRKQ+RE+ +
Sbjct: 144 CKVAVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAPFLRKQDRET---EE 200
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YV+N E+ L++ ++G ITS +M D K + F FVN+ + A V
Sbjct: 201 VYTNLYVRNFPADWDEEALRQFLEKYGEITS--MMLKEDSKGRRFAFVNYKEASVAKEVV 258
Query: 277 EALNGKKFDDKE--WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
LN K ++ V Q K +R+ LK +F DK NLY+KNLDD+
Sbjct: 259 TTLNDLKLEEASDPLLVCPHQDKVKRQNMLKAQFSTVSPGQDDKRLTSNLYIKNLDDTFD 318
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D L ELF +FGTITS KVM D N SRG GFV FS +EA+KA+ M+ K+V KPLYV
Sbjct: 319 DASLGELFKQFGTITSSKVMLDANNNSRGFGFVCFSNPQEATKAIAAMHLKLVKGKPLYV 378
Query: 395 ALAQRKEERRARLQ 408
LA+++++R R+Q
Sbjct: 379 GLAEKRDQRLMRMQ 392
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
Q+ ++GE L+P++ + D A K+TGM+LE+D E+L LL+ + LKAK+ EA+ VL+
Sbjct: 596 QKQMIGERLFPIIARDNPDLAGKITGMMLEIDNQELLQLLDDNDQLKAKIDEAIRVLK 653
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 182/371 (49%), Positives = 265/371 (71%), Gaps = 4/371 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F S SLYVGDL V ++ LY+ F+ G ++SVRVCRD + RSLGYGYVN++ +A
Sbjct: 16 FPSASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGH 75
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ +NF L+GKP+RIM+ +RDP++R+SG GN+F+ +LD SIDNK L+D F+ FG ILS
Sbjct: 76 ALNTMNFDVLHGKPVRIMWCHRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTILS 135
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR--KQERESTAD 214
CKV +D G +G+GFV F+ E+A AI ++NG L+ +++VFVG F R ++E E A
Sbjct: 136 CKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAK 194
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+F NVYVKN ++ TT++ L +IF ++G ++S +M D GKSK FGF+ F+ DA R
Sbjct: 195 MEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKR 254
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
++E +NGK+F ++ YV +AQKK ERE EL+ K E+ + K+ G++L+VKNL +S
Sbjct: 255 AIEEVNGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTD 314
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+ L+++F+ FGT+TS KV+ G +G GFV+FS+ EEA KA+ EM+GKM+ ++PLYV
Sbjct: 315 DEHLRKIFAPFGTVTSAKVIVK-GGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYV 373
Query: 395 ALAQRKEERRA 405
+ A+ K+ERRA
Sbjct: 374 SYARYKQERRA 384
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 54/77 (70%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
+ S L +ASPE Q+ +LGE L+PL+ L+ A+K+ GMLLEMD +E+L LLESPE+ +
Sbjct: 561 ITSTLVSASPEDQKKILGEWLFPLIQALQPTLASKIMGMLLEMDNSELLLLLESPESFCS 620
Query: 614 KVAEAMEVLRNVAQQQA 630
KV EA+ VL QQA
Sbjct: 621 KVDEAVAVLEACQAQQA 637
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 181/361 (50%), Positives = 256/361 (70%), Gaps = 4/361 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +A +ALD
Sbjct: 11 SLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GK IR+M+S RD +RKSG GN+FIKNLD+SIDNK L++ FS FG ILS KV
Sbjct: 71 MNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVM 130
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA--DKTRF 218
+D G S+GY FV F N+ +A AI+++NG LL D +VFVG F +++RE+ + F
Sbjct: 131 SDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRNKASEF 189
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L+++F ++G S VM D GKSK FGFV+FD+ + A ++VE
Sbjct: 190 TNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEE 249
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK + + +VG+AQKK ER+ ELK FEQ +E K +G+ LY+KNLDD+I D+KL
Sbjct: 250 MNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKL 309
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+I+ KVM++ G S+G G + FS+ EEA+KA+TEMNG+++ SKPL +AL+Q
Sbjct: 310 RKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNIALSQ 368
Query: 399 R 399
+
Sbjct: 369 K 369
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 160/282 (56%), Gaps = 16/282 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL + L + F FG I
Sbjct: 70 TMNFDMIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G SK + FV+F + A R++E +NGK D + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A +F N+Y+KN D + D++L+E+FS++G S KVM DP+G S+G GF
Sbjct: 185 K--------ASEF--TNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
V+F E A KA+ EMNGK + + ++V AQ+K ER+A L+
Sbjct: 235 VSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELK 276
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 100/199 (50%), Gaps = 26/199 (13%)
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAA 273
K R ++YV +LS TED L K F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQ 65
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLYVKNL 329
++++ +N FD +KGK S ++ + G+ N+++KNL
Sbjct: 66 KALDTMN---FD-----------------MIKGKSIRLMWSQRDACLRKSGIGNVFIKNL 105
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK++
Sbjct: 106 DRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKD 164
Query: 390 KPLYVALAQRKEERRARLQ 408
++V + +++R A L+
Sbjct: 165 CKVFVGRFKNRKDREAELR 183
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ LY+ +LD +++D +L F+ G + V+V ++ +S G+G + +++ EA
Sbjct: 288 RKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEG--QSKGFGLICFSSPEEA 345
Query: 95 TRALDELNFTPLNGKPIRIMYS 116
T+A+ E+N L KP+ I S
Sbjct: 346 TKAMTEMNGQILGSKPLNIALS 367
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 167/304 (54%), Positives = 229/304 (75%), Gaps = 3/304 (0%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T + G+P RIM+
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV +
Sbjct: 62 SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHY 121
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTED 233
+ E+A +AI +NGMLLN+K+VFVG + K++R+S + K F N+YVKN+ + T++
Sbjct: 122 ETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE 181
Query: 234 DLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
+ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +VE LN + ++ YVG
Sbjct: 182 EFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVG 241
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D+KL+ELFS +G ITS K
Sbjct: 242 RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAK 301
Query: 353 VMRD 356
VMR+
Sbjct: 302 VMRE 305
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 208/686 (30%), Positives = 314/686 (45%), Gaps = 149/686 (21%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 69 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAA 127
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
T A+ +N LN K + + + + +D + K+ NI++KN+++ + ++ F
Sbjct: 128 TNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRALF 187
Query: 149 STFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
+G+I S ++ D+ G+SRG+GFV F + E+A +A++ LN L ++++VG +K
Sbjct: 188 EKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKH 247
Query: 208 ERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
ERE A K + N+Y+KNLS+ ++ L+++F +G ITS VMR+A
Sbjct: 248 EREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREAT 307
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
+ P ++ + EA DKE G+A +K E E K T
Sbjct: 308 AEV----------PTESDKDKEA-------DKEKAKGEAGEKTEEGPEGK---------T 341
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
DK E + + K L G S+G GFV FS +EA
Sbjct: 342 DDKSEEKTEEKTEGKTEGAKPEKKHL-----------------GKSKGFGFVCFSNPDEA 384
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS----------QMRPPVGPRMPMYPP 425
SKA+TEMN +MV KPLYVALAQRK+ R+++L+ S Q+ G P P
Sbjct: 385 SKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMPQPFMQP 444
Query: 426 VAPGLGQQLFYGQGPPIIPPQPGF------------GYQQQLVPGM---RPNYFVPMVQP 470
+FYG P Q GF G ++PGM RP F P
Sbjct: 445 A-------VFYG-----TPGQQGFLPGAQRGGMQFAGQAGMVMPGMPGGRPAQFAQF--P 490
Query: 471 GQQNQRP-------------GGRRSGTGPMQQAQQPIPLMQPRMLP---------RGR-I 507
GQQ R GG+ G MQ A P L P+M RG+ +
Sbjct: 491 GQQGGRGMNPNQPLPPNFAMGGQSLPMGAMQGAGMPNGLNYPQMAQVQSFGRGGGRGQPM 550
Query: 508 YRYPP------------------GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM 549
PP G N+P PGG G GGMP + A +
Sbjct: 551 QGMPPATGNAPPIRGPGGPGFSQGRNMPMQGGRPGPGGRGQGAPGQGGMPRDETAGPSSI 610
Query: 550 QTGALASALANASPE-QQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 608
A NA+PE QQ+ +LGE +YP V + + A K+TGMLLEMD +E++ L++
Sbjct: 611 NLQAF-----NAAPEPQQKQMLGEAIYPKVLAQQPELAGKITGMLLEMDNSELIGLVDDD 665
Query: 609 EALKAKVAEAMEVLRNVAQQQATGPS 634
AL+AKV EA+ V + + PS
Sbjct: 666 AALRAKVDEALTVYDEYVKNKTEAPS 691
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 97/180 (53%), Gaps = 19/180 (10%)
Query: 235 LKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
L ++F G + S V RDA +S + +VN+++ D R++E LN + +
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
+Q+ + +L++T N+++KNLD +I + L + F+ FG I SCKV
Sbjct: 62 SQR------------DPALRKTGQG----NVFIKNLDTAIDNKALHDTFAAFGNILSCKV 105
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR 413
+D G S+G GFV + TAE A+ A+ +NG ++ K ++V K++R+++ F +M+
Sbjct: 106 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK--FEEMK 163
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 362 bits (930), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 183/368 (49%), Positives = 255/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLD+SIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 124 ILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEF 182
Query: 214 DKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F NVY+KN + ++ L ++F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 QNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+VE +NGK + + +VG+AQKK ER+ ELK FEQ E + +G LY+KNLD+
Sbjct: 243 AKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDE 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+AEEA+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQ+
Sbjct: 362 LNIALAQK 369
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 157/291 (53%), Gaps = 18/291 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N L+ K + L +R++ K+ NV++KNL + L + F FG I
Sbjct: 70 TMNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F + A R++E +NG D +VG+ + + +RE E +
Sbjct: 126 SSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K E N+Y+KN D + D++L E+FS++G S KVM D +G S+G GF
Sbjct: 185 K----------AHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPP 415
V+F + E A +A+ EMNGK + + L+V AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHE 285
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 176/318 (55%), Positives = 233/318 (73%), Gaps = 3/318 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+++F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 190 FTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDK
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 338 LKELFSEFGTITSCKVMR 355
L++ FS +G ITS K R
Sbjct: 310 LRKEFSPYGVITSAKKRR 327
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 159/296 (53%), Gaps = 22/296 (7%)
Query: 125 SGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEE 179
SG+G ++++ +L + L++ FS G ILS +V D + +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ A+D +N +L + + + +R+ K+ N+++KNL ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG I S V D G S+ FGFV+F+ + A +++ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
RE EL A E N+YVKNL + + L+ELFS+FG + S KVMRD +G
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSG 228
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
SR GFV F EEA KA+ MNGK V + LY AQ++ ER+ L+ F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 23/144 (15%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L +LF+Q G+++SV+V RD S S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSG-HSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCK 158
LD SID+ L FS +G I S K
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAK 324
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 180/366 (49%), Positives = 257/366 (70%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLYVGDL V ++ L+ F+ +G V+S+R+CRDL TR SLGY YVN+ +A
Sbjct: 6 KYRQASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + G+ IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG IL
Sbjct: 66 RALDTMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKIL 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV D G SRGYGFV F N+ +A AI+++NG+LL D ++FVGPF +++RE+
Sbjct: 126 SSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQN 184
Query: 216 --TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+ F N+Y+KN + ++ LK+ F +G I S VM D+ GKSK FGFV+FD + A
Sbjct: 185 KASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAK 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+V+ +NG++ ++ +VG+AQKK ER+ ELK FEQ +E + + G +YVKNLD++I
Sbjct: 245 RAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKNLDETI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
++KL++ FS FG+I KVM++ G SRG G + FS+ EEA++A+ EMNG+++ SKP+
Sbjct: 305 DEEKLRKAFSSFGSIIRVKVMQEE-GRSRGFGLICFSSPEEAARAMAEMNGRLLGSKPVN 363
Query: 394 VALAQR 399
+ALAQR
Sbjct: 364 IALAQR 369
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 163/296 (55%), Gaps = 18/296 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FST G +LS ++ D + + S GY +V F + A+ A+D
Sbjct: 10 ASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDVIQGQSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ +GFV+F + A R++E +NG D +VG + + +RE EL+
Sbjct: 126 SSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A +F N+Y+KN D + D+KLKE FS +G I S KVM D +G S+G GF
Sbjct: 185 K--------ASEFT--NIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPPVGPRM 420
V+F T E A +A+ +NG+ + + ++V AQ+K ER+A L+ F Q + R+
Sbjct: 235 VSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRV 290
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 361 bits (926), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 182/366 (49%), Positives = 251/366 (68%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLYVGDL V + L+ F+ +G V+S+R+CRDL T+RSLGY YVN+ +A
Sbjct: 6 KYRQASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ALD +NF + GK IR+M+S RD +RKSG GN+FIKNL KSIDNK L++ FS FG IL
Sbjct: 66 KALDTMNFDMIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKIL 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV +D G SRGY FV F ++ +A AI+ +NG LL ++FVGPF +++R++
Sbjct: 126 SSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQN 184
Query: 216 --TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN + ++ LK+IF FG I S VM D+ G+SK FGFV+FD + A
Sbjct: 185 KANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQ 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+VE +NGK + +VG+AQKK ER+ ELK FEQ +E +F G+ LY+KNLDDSI
Sbjct: 245 RAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRFRGVKLYIKNLDDSI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D++L+ FS FG+I+ KVM++ G S+G G + FS+ EEA+KA+ EMNG+++ SK L
Sbjct: 305 DDERLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATKAMVEMNGRILGSKSLN 363
Query: 394 VALAQR 399
+ALAQR
Sbjct: 364 IALAQR 369
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 18/289 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FS G +LS ++ D + Q S GY +V F + A+ A+D
Sbjct: 10 ASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDMIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D D S+ + FV+F A R++EA+NG +VG + + +R+ EL+
Sbjct: 126 SSKVMSD-DAGSRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A++F N+Y+KN D + D++LKE+FS FG I S KVM D G S+G GF
Sbjct: 185 K--------ANEFT--NVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA--RLQFSQMR 413
V+F + E A +A+ MNGK + +PL+V AQ+K ER+A +L F QM+
Sbjct: 235 VSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMK 283
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+F LY+ +LD S++D +L F+ G + V+V ++ RS G+G + +++ EA
Sbjct: 288 RRFRGVKLYIKNLDDSIDDERLRREFSSFGSISRVKVMKEEG--RSKGFGLICFSSPEEA 345
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E+N L K + I + R
Sbjct: 346 TKAMVEMNGRILGSKSLNIALAQR 369
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 361 bits (926), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 181/367 (49%), Positives = 254/367 (69%), Gaps = 4/367 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +Q+RE+
Sbjct: 124 ILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAEL 182
Query: 214 DK--TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F N+Y+KN + + L+++F ++G S VM D+ GKSK FGFV+F +
Sbjct: 183 QNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G+ LY+KNLDD
Sbjct: 243 AQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ EEA++A+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATRAMTEMNGRILGSKP 361
Query: 392 LYVALAQ 398
L +ALAQ
Sbjct: 362 LNIALAQ 368
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L K F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------TIKGKSIRLMWSQRDAYLRKSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G SRG FV F A +A+ EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGA 160
Query: 386 MVVSKPLYVALAQRKEERRARLQ 408
++ L+V + +++R A LQ
Sbjct: 161 LLKDCRLFVGRFKNRQDREAELQ 183
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 361 bits (926), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 183/395 (46%), Positives = 265/395 (67%), Gaps = 6/395 (1%)
Query: 9 QAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
+A V + S G A G V A ++ SLYVGDL + L+ F+ G V+S
Sbjct: 91 RAEFRVGPRRSVQEAGSARGGEVSVAAKYRLASLYVGDLHADATEDLLFRKFSXAGPVLS 150
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+R+CRD++TRR LGY YVN+ +A +ALD +NF + GKPIR+M+S RD +RKSG G
Sbjct: 151 IRICRDVATRRPLGYAYVNFLRPADAQKALDTMNFDAVEGKPIRLMWSQRDACLRKSGVG 210
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+ IKNLD+S+DNK L++ FS FG ILS KV +D G S+GY FV F ++ +A AI ++
Sbjct: 211 NVIIKNLDRSVDNKTLYEHFSGFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADCAIQEM 269
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTR---FNNVYVKNLSETTTEDDLKKIFGEFGII 245
NG ++ D+QV V PF +++RE+ +TR F NVYVKN E ++ L+ +F ++G
Sbjct: 270 NGKVIRDRQVLVAPFRSRRDREAEL-RTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRT 328
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S VM D+ GKSK FGFV+FD + A ++VE +NGK + + +VG+AQKK ER+ ELK
Sbjct: 329 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELK 388
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
FE+ ++ A + +G+ LY+KNLDD++ DD+L+ FS FG+I+ KVM + G +G G
Sbjct: 389 QVFEELKRDGARRCQGVKLYIKNLDDTVDDDRLRRAFSSFGSISRVKVM-EEEGQRKGFG 447
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
V FS+ EEA+KA+T+MNG+++ SKPL +ALA+R+
Sbjct: 448 LVCFSSPEEAAKAMTQMNGRVLGSKPLNIALAKRQ 482
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 149/281 (53%), Gaps = 16/281 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L L FS G +LS ++ D + + GY +V F A+ A+D
Sbjct: 123 SLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALDT 182
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + K + L +R++ K+ NV +KNL + L + F FG I S
Sbjct: 183 MNFDAVEGKPIR----LMWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILS 238
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F A +++ +NGK D++ V + + +RE EL+ +
Sbjct: 239 SKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTR 297
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
E N+YVKN + + D++L+ +FS++G S KVM D +G S+G GFV
Sbjct: 298 TS----------EFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFV 347
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
+F + E A KA+ EMNGK + + ++V AQ+KEER+A L+
Sbjct: 348 SFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELK 388
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 176/318 (55%), Positives = 232/318 (72%), Gaps = 3/318 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDK
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 338 LKELFSEFGTITSCKVMR 355
L++ FS +G ITS K R
Sbjct: 310 LRKEFSPYGVITSAKKRR 327
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 159/296 (53%), Gaps = 22/296 (7%)
Query: 125 SGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEE 179
SG+G ++++ +L + L++ FS G ILS +V D + +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ A+D +N +L + + + +R+ K+ N+++KNL ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG I S V D G S+ FGFV+F+ + A +++ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
RE EL A E N+YVKNL + + L++LFS+FG + S KVMRD +G
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
SR GFV F EEA KA+ MNGK V + LY AQ++ ER+ L+ F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 23/144 (15%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG-HSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCK 158
LD SID+ L FS +G I S K
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAK 324
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 178/368 (48%), Positives = 257/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL + L+ F+ G V+S+R+CRDL+TR+ LGY YVN+ +
Sbjct: 4 AAKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIR+M+S RD +R+SG GN+F+KNLD+S+DNK L++ FS FG
Sbjct: 64 AQRALDTMNFDVIKGRPIRLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F ++ +A AI+++NG ++ND+ VFV PF +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN + ++ L+ +F +G S VM D+ GKSK FGFV+F+ +
Sbjct: 183 RSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+VE +NGK + + +VG+AQKK ER+ ELK FEQ KE + +G+ LYVKNLDD
Sbjct: 243 AKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
++ D++L++ FS FG+IT KVM++ G SRG G + FS+ EEA+KALTEMNG+++ SK
Sbjct: 303 TVDDEQLRKEFSSFGSITRVKVMKEE-GYSRGFGLICFSSPEEAAKALTEMNGRVLGSKA 361
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 156/290 (53%), Gaps = 18/290 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186
++++ +L L FS G +LS ++ D + Q GY +V F A+ A+D
Sbjct: 10 ASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + L +R++ ++ NV+VKNL + L + F FG I
Sbjct: 70 TMNFDVIKGRPIR----LMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G SK + FV+F A ++E +NGK +D+ +V + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAELRS 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ A +F N+Y+KN D + D++L+ +FS +G S KVM D +G S+G GF
Sbjct: 185 R--------ASEFT--NVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRP 414
V+F + E A +A+ EMNGK + + ++V AQ+K ER+A L+ F QM+
Sbjct: 235 VSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKK 284
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 26/203 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L + F G + S + RD A + + +VNF
Sbjct: 2 NAAAKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG---KFEQSLKETADKFEGL-NLY 325
DA R+++ +N FD +KG + S ++ + G+ N++
Sbjct: 62 ADAQRALDTMN---FD-----------------VIKGRPIRLMWSQRDACLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
VKNLD S+ + L E FS FG I S KVM D G S+G FV F + A+ A+ +MNGK
Sbjct: 102 VKNLDRSVDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQ 408
++ +P++VA + +++R A L+
Sbjct: 161 VINDRPVFVAPFKPRKDREAELR 183
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 190/423 (44%), Positives = 266/423 (62%), Gaps = 51/423 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY GDL V ++ LY++FN +G V S+RVCRD TR+SLGY Y+N++ +A RALD
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN++P+ G+P R+M+S+RDP +R+SGAGN+++KNLD++IDNKAL+DTFS FGNILSCKVA
Sbjct: 109 LNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVA 168
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
G+SRG+GFV F+++ESA++AI KLNGM + +K V+V PF + ER K F N
Sbjct: 169 LTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTN 227
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VY+K++ + E+ +K+ FG FG ITS AV D G+ F FVN+ + + A +VE ++
Sbjct: 228 VYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMD 285
Query: 281 GKKFDDKE-----------------------------------------------WYVGK 293
GK ++E YV +
Sbjct: 286 GKDVRNEEEKAADRAQREREREERKAAREAAKAEGREEGDDVESDDDDEEPETSHLYVAR 345
Query: 294 AQKKYEREMELKGKFEQS-LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
AQ K ER LK +F S + +F G+NLYVKNL + + D +LK++F FGT+TS K
Sbjct: 346 AQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPFGTVTSVK 405
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQM 412
VM D G+SRG GFV FST EEA+KA+T+M+ K++ KPLYV + +++E+R RLQ
Sbjct: 406 VMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRYR 465
Query: 413 RPP 415
PP
Sbjct: 466 APP 468
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LYV +L V+D++L +F G V SV+V D S G+G+V ++ EAT+A+
Sbjct: 375 VNLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD-DKGVSRGFGFVCFSTHEEATKAVT 433
Query: 100 ELNFTPLNGKPIRI-MYSYRDPTIRK 124
+++ + GKP+ + M+ R+ + +
Sbjct: 434 DMHLKLIGGKPLYVGMHEKREQRLER 459
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 190/423 (44%), Positives = 266/423 (62%), Gaps = 51/423 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY GDL V ++ LY++FN +G V S+RVCRD TR+SLGY Y+N++ +A RALD
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN++P+ G+P R+M+S+RDP +R+SGAGN+++KNLD++IDNKAL+DTFS FGNILSCKVA
Sbjct: 109 LNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVA 168
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
G+SRG+GFV F+++ESA++AI KLNGM + +K V+V PF + ER K F N
Sbjct: 169 LTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTN 227
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VY+K++ + E+ +K+ FG FG ITS AV D G+ F FVN+ + + A +VE ++
Sbjct: 228 VYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMD 285
Query: 281 GKKFDDKE-----------------------------------------------WYVGK 293
GK ++E YV +
Sbjct: 286 GKDVRNEEEKAADRAQREREREERKAAREAAKAEGREDGDDVESDDDDEEPETSHLYVAR 345
Query: 294 AQKKYEREMELKGKFEQS-LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
AQ K ER LK +F S + +F G+NLYVKNL + + D +LK++F FGT+TS K
Sbjct: 346 AQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPFGTVTSVK 405
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQM 412
VM D G+SRG GFV FST EEA+KA+T+M+ K++ KPLYV + +++E+R RLQ
Sbjct: 406 VMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRYR 465
Query: 413 RPP 415
PP
Sbjct: 466 APP 468
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LYV +L V+D++L +F G V SV+V D S G+G+V ++ EAT+A+
Sbjct: 375 VNLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD-DKGVSRGFGFVCFSTHEEATKAVT 433
Query: 100 ELNFTPLNGKPIRI-MYSYRDPTIRK 124
+++ + GKP+ + M+ R+ + +
Sbjct: 434 DMHLKLIGGKPLYVGMHEKREQRLER 459
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 219/598 (36%), Positives = 325/598 (54%), Gaps = 76/598 (12%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+Q SLYVGDLD ++++ QL ++F G +++VRVCRD+ T+RSLGYGYVNY+ A+ A
Sbjct: 16 KQLQVASLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSA 75
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
T+A++E+NF + K IRIM+ RDP +R SG GN+F+KNL +D++ L F FG I
Sbjct: 76 TKAMEEMNFKRVGEKCIRIMWQQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKKFGEI 135
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM--LLNDKQ--VFVGPFLRKQERE 210
LSCKV D G SRGYGFV F ++ +AKSAI+ +NG+ ++K+ ++V F+R+ R
Sbjct: 136 LSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALYVANFIRRNARL 195
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
+ A F NVY+K + T + ++K F +FG ITS A+ +D +G++ F F NF+ D
Sbjct: 196 A-ALVANFTNVYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKNGRA--FAFCNFEKHD 252
Query: 271 DAARSVEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
DA +++E + + + ++ YV +AQ + ER + L+ K+ Q + G NLY
Sbjct: 253 DAVKAIEEFHDHEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQC------QSLGNNLY 306
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
V+N D ++ L ELF E+G I SC+VM D NG+SRG GFV+F A++A+ AL EM+G+
Sbjct: 307 VRNFDPEFTEKDLNELFKEYGVIRSCRVMTDANGVSRGFGFVSFENADQANAALREMSGR 366
Query: 386 MVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP 445
M+ KPL V +AQR+++R L+ + ++PP
Sbjct: 367 MLNGKPLVVNIAQRRDQRFTMLRLQLQQRLQMMMRQIHPP-------------------- 406
Query: 446 QPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRG 505
P P Q QR GR+ G Q P+ P ++PR
Sbjct: 407 --------------------PFGMPRQMPQRRRGRQHPRGHDQMPSLPV---MPPVIPRN 443
Query: 506 RIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQ 565
++ N P + V+ P P A P A L N + E+
Sbjct: 444 DMF------NTPSMGVSAAPRTPQASP---------ATAPDTPPLPPITAEDLQNMTMEE 488
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
QR LG+ LY V +L D+A K+TGM LEM+ E LL + L+ KV EA+ VL+
Sbjct: 489 QRAALGDRLYIKVYELAPDHAPKITGMFLEMNPKEAHTLLTNQRLLQDKVTEALCVLK 546
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 202/421 (47%), Positives = 268/421 (63%), Gaps = 36/421 (8%)
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
++ LN+ L GKP+RIM+S RDP+ R SG GN+F+KNLD+SIDNK L D FS FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVA D+ G S+GYGFVQF ++ S +A + NG L+ ++ + V PF+ + + DK+R
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ----WDKSR 116
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL ET T+ DLK++FGEFG ITS VM+D +GKS+ FGFVNF+ + A ++
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFE-QSLKETADKFEGLNLYVKNLDDSISD 335
E +NG D+KE +VG+AQ+K R +LK KFE + + +G+NLYVKNLDDS+ +
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+ELFSEFGTITSCKVM NGIS+G GFV FST+EEASKA+ +MNGKMV +KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 396 LAQRKEERRARLQFSQMRPPVGP-RMPMYPPV---APGLGQQLFYGQGPPIIPPQPGFGY 451
LAQ KE+ + LQ PP P + P++ V A L QQ P G+ +
Sbjct: 297 LAQCKEQHKLHLQTQFNNPPPSPHQQPIFSQVVAPATMLSQQT----------PLRGYNF 346
Query: 452 QQQLVPGMR----------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRM 501
Q + G R PN+ VP QP + P G P PL+QP +
Sbjct: 347 QPYSMCGSRMPNSCPPISIPNFMVP--QPFRPTLYPPAPLVGL----YGSLPQPLLQPNL 400
Query: 502 L 502
Sbjct: 401 W 401
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 159/284 (55%), Gaps = 19/284 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ QL D+F+ G+V+S +V RD S S GYG+V + + A +
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTACNF 90
Query: 101 LNFTPLNGKPIRIM-YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T + + I + + R + N+++KNL ++ + L F FG I S V
Sbjct: 91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRF 218
D G+SR +GFV F+ E+A +AI+K+NG+++++K++ VG RK R T D K +F
Sbjct: 151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR--TEDLKAKF 208
Query: 219 N--------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
N+YVKNL ++ L+++F EFG ITS VM ++G SK GFV
Sbjct: 209 ELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFV 268
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
F ++A++++ +NGK +K YV AQ K + ++ L+ +F
Sbjct: 269 EFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 19/200 (9%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V T++YV +L + D+ L LF + G++ S V +D +S +G+VN+ A A A
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTA 175
Query: 98 LDELNFTPLNGKPIRIMYSYR--------------DPTIR--KSGAG-NIFIKNLDKSID 140
++++N ++ K + + + R + IR K+ G N+++KNLD S+D
Sbjct: 176 IEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVD 235
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
N L + FS FG I SCKV S G S+G GFV+F E A A+ K+NG ++ +K ++V
Sbjct: 236 NTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
Query: 201 GPFLRKQERESTADKTRFNN 220
+ +E+ +T+FNN
Sbjct: 296 S-LAQCKEQHKLHLQTQFNN 314
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA 90
+ D + +LYV +LD SV++++L +LF++ G + S +V S S G G+V ++
Sbjct: 214 IRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVH-SNGISKGVGFVEFST 272
Query: 91 AHEATRALDELNFTPLNGKPIRI 113
+ EA++A+ ++N + KPI +
Sbjct: 273 SEEASKAMLKMNGKMVGNKPIYV 295
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 240/618 (38%), Positives = 335/618 (54%), Gaps = 65/618 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY F+ G ++S+RVCRD+ TRRSLGY Y+N+ + + +
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADGSEEVGR 71
Query: 101 -LNFTPLNGK------PIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
+F +G+ +R + R+ ++ + D D G
Sbjct: 72 GKHFYQEHGRVHRQQGAVRHLLRIREHSVLQGKGQRCQGLCRDAGGD---------VTGR 122
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
+V D G S+GYGFV F+ EE+A AI+ +NGMLLND++VFVG F ++ERE
Sbjct: 123 TALFQVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFKSRKEREEEL 181
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ +F NVY+KN E T++ LK++F FG S VM+D G+S+ FGFVNF D
Sbjct: 182 GSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGD 241
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NG + + K YVG+AQK+ ER+ ELK KFE ++ +++G+NLYVKNLDD
Sbjct: 242 AQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDD 301
Query: 332 SISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
I D++L++ F+ +GTITS KVM D P SRG GFV FS+ EEA+KA+TEMNG++V +K
Sbjct: 302 GIDDERLRKEFAPYGTITSAKVMTDGPQ--SRGFGFVCFSSPEEATKAVTEMNGRIVATK 359
Query: 391 PLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFG 450
PLYVALAQR+EER+A L M+ R M PV Q +Y P PP F
Sbjct: 360 PLYVALAQRREERKAILTNKYMQRLATLRT-MSSPVIDSYQQAGYYMTVPQ--PPTRSF- 415
Query: 451 YQQQLVPGMR--PNYFVPMVQPGQQNQRPG------GRRSGTGPMQQAQQPIPLMQPRML 502
Y V MR P + GQ ++ G G R G+ P+ +Q P ++
Sbjct: 416 YSPNAVSAMRALPRW------TGQPHRLQGPYTIVSGPRRGSTPIASVRQA-STQAPNII 468
Query: 503 PRGRIYRYPPGCNIPDVPVAG---VPGGMLPGPYDIGGMPFRDAAFS----------QPM 549
+ NI V G +PG G Y R+A QP
Sbjct: 469 SSAQ-----KTNNIGTQTVGGRADIPGIPRSGQYKYSS-AVRNAQHVIAVHAPPTRPQPS 522
Query: 550 -----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHL 604
Q AS LA A Q+ LLGE LYPL+ L + A K+TGMLLE+D +E+LH+
Sbjct: 523 VHIQGQEPLTASMLAAAPLMDQKQLLGERLYPLISALHPNLAGKITGMLLEIDNSELLHM 582
Query: 605 LESPEALKAKVAEAMEVL 622
LE+PE+L +KV+ L
Sbjct: 583 LETPESLHSKVSSRSSTL 600
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 112/208 (53%), Gaps = 23/208 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + D +L ++F+ G+ +SVRV +D RS G+G+VN+ +A +A+D
Sbjct: 189 TNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHGDAQKAVD 247
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N T LNGK I R + I++ N+++KNLD ID++
Sbjct: 248 EMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDDER 307
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L F+ +G I S KV TD QSRG+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 308 LRKEFAPYGTITSAKVMTDG-PQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 366
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTT 231
R++ER++ N Y++ L+ T
Sbjct: 367 QRREERKAI-----LTNKYMQRLATLRT 389
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD ++D +L F G + S +V D R G+G+V +++ EA
Sbjct: 287 QRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKVMTDGPQSR--GFGFVCFSSPEEA 344
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
T+A+ E+N + KP+ + + R RK+ N +++ L
Sbjct: 345 TKAVTEMNGRIVATKPLYVALAQRREE-RKAILTNKYMQRL 384
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 191/410 (46%), Positives = 266/410 (64%), Gaps = 8/410 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDLD V + L +F+ MG + +V +CR T RSL YGYVN+ ++A +AL
Sbjct: 20 SLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSN 79
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN T L GK +RIM+ R+P RKSG GN+++KNLD SID+ L FS FG ILSCKV
Sbjct: 80 LNHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFGTILSCKVV 139
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES--TADKTRF 218
+ G+S+GYGFVQFD+E+SA +A L+ +L +K+++V F++K ER + + D+ +F
Sbjct: 140 EEH-GKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTTATSYDELKF 198
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNLS+ T+D +F FG I S +M+D +GKS+ FGFV+F+ P+DA ++V+A
Sbjct: 199 TNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDA 258
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG + + + +VG+AQ K ER+ L+ +++ +KF+ NLYVKNL I +DKL
Sbjct: 259 LNGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKL 318
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ELFS G I S KVMR NG SRG GFV FS+ EEA KAL +NG + K LYVA+AQ
Sbjct: 319 QELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQ 378
Query: 399 RKEERRARLQ--FS--QMRPP-VGPRMPMYPPVAPGLGQQLFYGQGPPII 443
K +R+ LQ FS Q +PP + + PP++P Y Q P +
Sbjct: 379 CKRDRQLALQTYFSVPQSQPPYLSDSSVVPPPISPVYYNFYPYSQQVPFL 428
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 30/305 (9%)
Query: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 82
N A G+G+ LYV +LD S++ + L LF++ G ++S +V + +S G
Sbjct: 98 NPCARKSGIGN--------LYVKNLDASIDSAGLQSLFSKFGTILSCKVVEEHG--KSKG 147
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNL 135
YG+V +++ A A L+ T L K + + + + R + N+++KNL
Sbjct: 148 YGFVQFDSEDSALAARTALHDTMLKEKKLYVS-RFVKKSERTTATSYDELKFTNLYVKNL 206
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
K + A H+ FS FG I+S + D G+SRG+GFV F++ E AK A+D LNG L
Sbjct: 207 SKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLES 266
Query: 196 KQVFVGPFLRKQERE------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+ +FVG K ER+ + +K + +N+YVKNL+ D L+++F G
Sbjct: 267 RTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKLQELFSCSG 326
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S VMR +G S+ FGFV F P++A +++ ALNG F K YV AQ K +R++
Sbjct: 327 KIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQCKRDRQLA 386
Query: 304 LKGKF 308
L+ F
Sbjct: 387 LQTYF 391
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMR-DPNGISRGSGFVAF 369
SLK D L+LYV +LD +++ L+ +FS G I + + R G S G+V F
Sbjct: 8 SLKLPGDPRPRLSLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNF 67
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQR 399
+A KAL+ +N + K + + QR
Sbjct: 68 YRPYDAYKALSNLNHTYLKGKLMRIMWCQR 97
>gi|294461458|gb|ADE76290.1| unknown [Picea sitchensis]
Length = 313
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 211/316 (66%), Positives = 251/316 (79%), Gaps = 22/316 (6%)
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQ 411
MRD +G S+GSGFVAFS+ +EAS+AL EMNGK+VVSKPLYVALAQRKEERRARLQ FSQ
Sbjct: 1 MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQ 60
Query: 412 MRPPVG------PRMPMYPPVAPGLGQQLFYGQGPP-IIPPQP-GFGYQQQLVPGMRP-- 461
+R PVG R+PMYPP PGL QQ+FYGQGPP +IPPQ GFGYQQQL+PGMRP
Sbjct: 61 LRNPVGMAPAVPARVPMYPPGGPGLNQQIFYGQGPPALIPPQAAGFGYQQQLIPGMRPGS 120
Query: 462 ----NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRG-RIYRYPPGCNI 516
N+++P++Q Q + G R QQ QQ +PL+Q +MLPRG R+YRYPPG N+
Sbjct: 121 APIPNFYLPLMQAQQGQRPGGRRGGVAPIQQQPQQQLPLLQQQMLPRGNRVYRYPPGRNV 180
Query: 517 PDVPVAGVPGGMLPGPYDIGGMPFRDA--AFSQPMQTGALASALANASPEQQRTLLGENL 574
++P++GV GGM P P D+GG+P R A SQP+ GALASALANA+PEQQRT+LGE+L
Sbjct: 181 NEIPLSGVAGGMHPLPLDMGGLPLRAAETTISQPIPIGALASALANATPEQQRTMLGESL 240
Query: 575 YPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPS 634
YPLVDQLEHD+AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV Q QA +
Sbjct: 241 YPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVTQAQA---N 297
Query: 635 PTDRVASLSLNDNIVS 650
P +++A+LSLN+ +VS
Sbjct: 298 PAEQLAALSLNETLVS 313
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
MRD G SK GFV F PD+A+R++ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 1 MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQ 60
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
D G S+G GFV F + + A A+ ++NG ++ K ++V RK+ER +
Sbjct: 3 DFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRA 52
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 26/208 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 115 NFLQLADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSG 154
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQ 408
EMNGK++ ++V + +++R A L+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELR 241
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDMIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 26/208 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 115 NFLQLADAQKALDTMN---FD-----------------MIKGKSIRLMWSQRDAYLRRSG 154
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQ 408
EMNGK++ ++V + +++R A L+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELR 241
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEF--TNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 26/208 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 115 NFLQLADAQKALDTMN---FDI-----------------IKGKSIRLMWSQRDAYLRRSG 154
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQ 408
EMNGK++ ++V + +++R A L+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELR 241
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 61 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 120
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 121 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 180
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 181 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 239
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 240 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 299
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 300 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 359
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 360 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 418
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 419 LSIALAQR 426
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 68 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 127
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 128 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 183
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 184 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 242
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 243 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 292
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 293 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 340
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 26/208 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 54 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 113
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 114 NFLQLADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSG 153
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 154 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 212
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQ 408
EMNGK++ ++V + +++R A L+
Sbjct: 213 EMNGKLLKGCKVFVGRFKNRKDREAELR 240
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEFT--NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 26/208 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 115 NFLQLADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSG 154
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQ 408
EMNGK++ ++V + +++R A L+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELR 241
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEFT--NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 27/208 (12%)
Query: 207 QERE-STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
++RE + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDREMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 115 NFLQLADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSG 154
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQ 408
EMNGK++ ++V + +++R A L+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELR 241
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 186 --------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 26/203 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQ 408
++ ++V + +++R A L+
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELR 183
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 186 --------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 26/203 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQ 408
++ ++V + +++R A L+
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELR 183
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 178/366 (48%), Positives = 251/366 (68%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLYVGDL V + L+ FN +G V+S+R+CRDL TRRSLGY YVN+ +A
Sbjct: 6 KYRHASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ LD +NF + GK IR+M+S RD +RKSG GN+FIKNLD+SIDNK L++ FS FG IL
Sbjct: 66 KVLDTMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKIL 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV +D G SRGY FV F ++ +A AI+++NG LL + ++FVGPF ++ERE+
Sbjct: 126 SSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQN 184
Query: 216 --TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN + ++ LK++F ++G I S VM D+ GKSK FGFV+FD + A
Sbjct: 185 KANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQ 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+VE +NGK + +VG+AQKK ER+ ELK FEQ +E + G+ LY+KNLD++I
Sbjct: 245 RAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIKNLDETI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+++L+ FS FG+++ KVM + G S+G G + FS EEA+KA+ EMNG+++ SK +
Sbjct: 305 DEEQLRRAFSSFGSMSRVKVM-EEEGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAIN 363
Query: 394 VALAQR 399
+ALAQR
Sbjct: 364 IALAQR 369
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 160/289 (55%), Gaps = 18/289 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L F+ G +LS ++ D + + S GY +V F N A+ +D
Sbjct: 10 ASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL + L + F FG I
Sbjct: 70 TMNFDMIQGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F A R++E +NG + +VG + + ERE EL+
Sbjct: 126 SSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A++F N+Y+KN D + D++LKE+FS++G I S KVM D +G S+G GF
Sbjct: 185 K--------ANEFT--NVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
V+F T E A +A+ MNGK + + ++V AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLK 283
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
S K R ++YV +L TED L + F G + S + RD +S + +VNF +
Sbjct: 2 SVDAKYRHASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKN 328
DA + ++ +N FD Q K R M S ++ + G+ N+++KN
Sbjct: 62 ADAQKVLDTMN---FD-------MIQGKSIRLM-------WSQRDAYLRKSGIGNVFIKN 104
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LD SI + L E FS FG I S KVM D G SRG FV F + A +A+ EMNG ++
Sbjct: 105 LDRSIDNKMLYEHFSAFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLK 163
Query: 389 SKPLYVALAQRKEERRARLQ 408
+ L+V + ++ER A LQ
Sbjct: 164 NCRLFVGPFKNRKEREAELQ 183
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 182/385 (47%), Positives = 259/385 (67%), Gaps = 7/385 (1%)
Query: 19 SPATNGIANNGG---VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
S ++ G A++G + A ++ SLYVGDL V + L+ F+ G V+S+R+CRD
Sbjct: 112 SKSSRGQAHSGKDKEMSVAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQ 171
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
TRRSLGY YVN+ +A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNL
Sbjct: 172 VTRRSLGYAYVNFLQLTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNL 231
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
DKSIDNK L++ FS FG ILS KV +D G S+GY FV F N+ +A AI+++NG LL
Sbjct: 232 DKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKS 290
Query: 196 KQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
+VFVG F +++RE+ + + F N+Y+KN ++ LK +F ++G S VM D
Sbjct: 291 CKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD 350
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+ GKSK FGFV+FD + A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +
Sbjct: 351 SRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKR 410
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373
E ++G+ LYVKNLDD+I D+KL+ FS FG+I KVM+ G S+G GF+ FS+ E
Sbjct: 411 ERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFGFICFSSLE 469
Query: 374 EASKALTEMNGKMVVSKPLYVALAQ 398
+A+KA+ EMNG+ + SKP+ +ALAQ
Sbjct: 470 DATKAMIEMNGRFLGSKPISIALAQ 494
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 161/288 (55%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 137 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDT 196
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 197 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILS 252
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NG+ + +VG+ + + +RE EL+ K
Sbjct: 253 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSK 311
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D G S+G GFV
Sbjct: 312 --------ASEFT--NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFV 361
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 362 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 409
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 247/362 (68%), Gaps = 4/362 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V + L+ F+ G V+S+R+CRD TRRSLGY YVN+ +A +ALD
Sbjct: 287 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALD 346
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG ILS KV
Sbjct: 347 TMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILSSKV 406
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+D G S+GY FV F N+ +A AI+++NG LL +VFVG F +Q+RE+ + +
Sbjct: 407 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSKASE 465
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD + A ++VE
Sbjct: 466 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 525
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG+ + + +V +AQKK ER+ ELK FEQ E + + LYVKNLDD+I D+K
Sbjct: 526 EMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEK 585
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+I+ KVM++ G S+G G + FS+ E+A KA+TEMNG+++ SKPL +ALA
Sbjct: 586 LRKEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALA 644
Query: 398 QR 399
QR
Sbjct: 645 QR 646
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 164/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FS G +LS ++ D L + S GY +V F + A+ A+D
Sbjct: 288 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALDT 347
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 348 MNFDVIQGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILS 403
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 404 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSK 462
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 463 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 512
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++VA AQ+K ER+A L+ F Q++
Sbjct: 513 SFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLK 560
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 20/196 (10%)
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAA 273
K R ++YV +L TED L + F G + S + RD +S + +VNF DA
Sbjct: 283 KYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQ 342
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDS 332
++++ +N FD Q K R M S ++ + G+ N+++KNLD S
Sbjct: 343 KALDTMN---FD-------VIQGKSIRLM-------WSQRDAYLRRSGIGNVFIKNLDKS 385
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
I + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK++ +
Sbjct: 386 IDNKTLYEHFSAFGRILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKV 444
Query: 393 YVALAQRKEERRARLQ 408
+V + +++R A L+
Sbjct: 445 FVGRFKSRQDREAELR 460
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 351 bits (901), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 258/367 (70%), Gaps = 4/367 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+++G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK+L++ FS FG
Sbjct: 64 AQKALDTMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G S+GY FV F ++ +A AI+++NG L D +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAEL 182
Query: 214 --DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ F NVY+KN + ++ L+++F +G I S VM ++ GKS+ FGFV+FD +
Sbjct: 183 RNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + + +VG+AQKK ER+ ELK FEQ KE +G LY+KNLD+
Sbjct: 243 ARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKNLDE 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+I+ KVM++ G S+G G + FS++E+A++A+T MNG+++ SKP
Sbjct: 303 NIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSSEDAARAMTVMNGRILGSKP 361
Query: 392 LYVALAQ 398
L +ALAQ
Sbjct: 362 LNIALAQ 368
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 163/291 (56%), Gaps = 18/291 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 10 ASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDVVKGKAIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G SK + FV+F A R++E +NGK D + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A +F N+Y+KN D + D++L+E+FS +G I S KVM + G SRG GF
Sbjct: 185 K--------ASEFT--NVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPP 415
V+F + E A KA+ EMNGK V +P++V AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKE 285
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 101/203 (49%), Gaps = 26/203 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L K F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------VVKGKAIRLMWSQRDAYLRKSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F + A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQ 408
+ ++V + +++R A L+
Sbjct: 161 FLKDCKVFVGRFKSRKDREAELR 183
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 178/367 (48%), Positives = 249/367 (67%), Gaps = 4/367 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E ++G+ LYVKNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I KVM+ G S+G GF+ FS+ E+A+KA+ EMNG + SKP
Sbjct: 303 TIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFGFICFSSLEDATKAMIEMNGCFLGSKP 361
Query: 392 LYVALAQ 398
+ +ALAQ
Sbjct: 362 ISIALAQ 368
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 162/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRSK 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 186 --------ASEFT--NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 26/203 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
S A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 2 SVAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 TDAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQ 408
++ S ++V + +++R A L+
Sbjct: 161 LLKSCKVFVGRFKNRKDREAELR 183
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 192/387 (49%), Positives = 253/387 (65%), Gaps = 27/387 (6%)
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
++ LNF L GKP+RIM+S RDP+ R SG GN+F+KNLD+SIDNK L D FS FG +LSC
Sbjct: 1 MEMLNFYKLKGKPMRIMFSERDPSKRLSGRGNVFVKNLDESIDNKQLSDMFSAFGKVLSC 60
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL-RKQERESTADKT 216
KV D+ G S+GYGFVQF +E S A + NG L+ ++ + V PF+ R+Q ES
Sbjct: 61 KVVRDASGVSKGYGFVQFYSELSVNIACNVRNGTLIRNQHIHVSPFVSRRQWDESRV--- 117
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL+ETTT+DDLK IF EFG ITS VM+D +GKS+ FGFVNF+ + A ++
Sbjct: 118 -FTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAI 176
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFE-QSLKETADKFEGLNLYVKNLDDSISD 335
+ +NG D+KE +VG+AQ+K R +LK F+ + +K +G NLYVKNLD S+ +
Sbjct: 177 DKMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDN 236
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+ELFSEFGTI SCKVM PN IS+G GFV FST+EEASKA+ +MNGK+V +KP+YV+
Sbjct: 237 TKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVS 296
Query: 396 LAQRKEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQG-PPIIPP---QPGF 449
LAQ KEE + L QF+ + P + +AP Q + Q PP+ P Q +
Sbjct: 297 LAQCKEEHKLHLHTQFNNL-----PWNVVSSTIAPSPHQHPIFSQAWPPMSIPNTMQRVY 351
Query: 450 GYQQQLVPGMR----------PNYFVP 466
+Q + G R PN+ VP
Sbjct: 352 NFQSYFMCGSRMSNSCPPMSMPNFMVP 378
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 151/282 (53%), Gaps = 15/282 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ QL D+F+ G+V+S +V RD S S GYG+V + + A +
Sbjct: 32 NVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASG-VSKGYGFVQFYSELSVNIACNV 90
Query: 101 LNFTPLNGKPIRIM-YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T + + I + + R N+++KNL ++ + L F FG I S V
Sbjct: 91 RNGTLIRNQHIHVSPFVSRRQWDESRVFTNVYVKNLAETTTDDDLKMIFEEFGEITSAVV 150
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD----- 214
D G+SR +GFV F+ E+A +AIDK+NG ++++K++ VG RK+ R
Sbjct: 151 MKDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKL 210
Query: 215 -------KTRF-NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
KTR N+YVKNL + L+++F EFG I S VM + SK GFV F
Sbjct: 211 EKIKRDMKTRKGTNLYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEF 270
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
++A++++ +NGK +K YV AQ K E ++ L +F
Sbjct: 271 STSEEASKAMLKMNGKVVGNKPIYVSLAQCKEEHKLHLHTQF 312
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 23/211 (10%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V T++YV +L + D L +F + G++ S V +D + + +G+VN+ A A A
Sbjct: 117 VFTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRM-FGFVNFEKAEAAVTA 175
Query: 98 LDELNFTPLNGKP---------------IRIMYSY----RDPTIRKSGAGNIFIKNLDKS 138
+D++N T ++ K +++++ RD RK N+++KNLD S
Sbjct: 176 IDKMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRK--GTNLYVKNLDYS 233
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+DN L + FS FG I+SCKV S+G GFV+F E A A+ K+NG ++ +K +
Sbjct: 234 VDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPI 293
Query: 199 FVGPFLRKQERESTADKTRFNNVYVKNLSET 229
+V + +E T+FNN+ +S T
Sbjct: 294 YVS-LAQCKEEHKLHLHTQFNNLPWNVVSST 323
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 215/520 (41%), Positives = 297/520 (57%), Gaps = 65/520 (12%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K+ATD G+S+G+GFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTT 231
F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+ + N+YVKN++ TT
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++VEALN + + ++ YV
Sbjct: 121 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 180
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+KL+E F+ +GTITS
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 240
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQ 411
KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+AQRK+ RR SQ
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRR-----SQ 295
Query: 412 MRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPG 471
+ + R M A G +PP + G+ P VP P
Sbjct: 296 LAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPP---------MFYGVMPPRGVPFNGPN 346
Query: 472 QQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPG 531
Q P G G M P+ R + PV GVP
Sbjct: 347 PQQMNPMGGMPKNG---------------MPPQFR-----------NGPVYGVP------ 374
Query: 532 PYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVD--QLEHDNAAKV 589
GG P +Q Q ++QR LGE LY V + A K+
Sbjct: 375 --PQGGFPRNANDNNQFYQ-------------QKQRQALGEQLYKKVSAKTSNEEAAGKI 419
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
TGM+L++ EV LLES E + EA + ++Q
Sbjct: 420 TGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQ 459
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 156/288 (54%), Gaps = 19/288 (6%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ S ++++ +L +++ LYD F+ G ++S ++ D +S G+G+V++ A
Sbjct: 10 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 68
Query: 95 TRALDELNFTPLNGKPI----RIMYSYRDPTIRKSGAG--NIFIKNLDKSIDNKALHDTF 148
A+D LN LNG+ I + RD + ++ A N+++KN++ ++ + F
Sbjct: 69 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF 128
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
+ FG I+S + D+ G+ +G+GFV ++ E A A++ LN LN ++++VG +K E
Sbjct: 129 AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 188
Query: 209 RESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
R K ++ N++VKNL ++ ++ L++ F +G ITS VMR +G
Sbjct: 189 RMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENG 248
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
KSK FGFV F P++A +++ N + K YV AQ+K R +L
Sbjct: 249 KSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 296
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD SV+D +L + F G + S +V R +S G+G+V ++ EAT
Sbjct: 207 KYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEAT 265
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 266 KAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 304
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 173/349 (49%), Positives = 234/349 (67%), Gaps = 6/349 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +LYVGDL V D+QLY F++ ++S RVC+D +T +SL YGYVN ++ EA RA+
Sbjct: 14 AATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAI 73
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ N + LNGK IR+M+ RD RKSG GN+F+KNL SIDN LHD F +GNILS K
Sbjct: 74 ELKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSK 133
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+A G+S+G+G++QFD+EESA AI K+NG + DKQ++VG F+RK ER +F
Sbjct: 134 IARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKF 193
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL TE L + F FG I S A+ +D +G+SK FGFVN+D PDDA R++EA
Sbjct: 194 TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEA 253
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKF-EQSLKETADKFEGLNLYVKNLDDSISDDK 337
++G +F K YV +AQKK ERE L F E+ LK G N+YVKN+D S+ D++
Sbjct: 254 MDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHM-----GSNIYVKNIDTSVGDEE 308
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
L++ FS G + S KVMRD G S+G GFV FST EA K+++ NG++
Sbjct: 309 LRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 154/284 (54%), Gaps = 19/284 (6%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAI 185
A +++ +L + + L+ FS F ++S +V DS G+S YG+V + + A AI
Sbjct: 14 AATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAI 73
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+ N LN K + V R++ A K+ NV+VKNL+ + L +F ++G I
Sbjct: 74 ELKNHSSLNGKVIRVMWL----SRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNI 129
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM-EL 304
S+ + R DGKSK FG++ FD + A +++ +NG DK+ YVGK +K ER + +L
Sbjct: 130 LSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDL 189
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
KF NLYVKNLD +++ L E FS FG I S + +D NG S+G
Sbjct: 190 DAKFT-------------NLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGF 236
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
GFV + + ++A +A+ M+G SK LYVA AQ+K ER L
Sbjct: 237 GFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILH 280
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 143/267 (53%), Gaps = 23/267 (8%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L S+++ L+DLF + G ++S ++ R +S G+GY+ +++
Sbjct: 96 DARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEE 154
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG---------NIFIKNLDKSIDNKA 143
A A+ ++N + + K I Y IRKS N+++KNLD + K
Sbjct: 155 SANVAIQKMNGSTVRDKQI-----YVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKH 209
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS+FG I+S + D GQS+G+GFV +D+ + A+ A++ ++G K ++V
Sbjct: 210 LGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARA 269
Query: 204 LRKQERESTAD--------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
+K ERE K +N+YVKN+ + +++L+ F G + S VMRD
Sbjct: 270 QKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDK 329
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGK 282
G SK FGFV F +A +S+ NG+
Sbjct: 330 GTSKGFGFVCFSTVVEAFKSMSCFNGE 356
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 345 bits (885), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 178/309 (57%), Positives = 231/309 (74%), Gaps = 4/309 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+ +RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCK+
Sbjct: 77 MNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIV 136
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR-F 218
D G SRGYGFV F+ EE+A+ AI+K+NGMLLN K+VFVG F+ ++ER E DK R F
Sbjct: 137 CDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKF 195
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR-DADGKSKCFGFVNFDDPDDAARSVE 277
NNVYVKN SE ++ L+ +F +G I S VM D GK K FGFV+F+DP+ A ++VE
Sbjct: 196 NNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVE 255
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
ALNG K YVG+AQKK ER+ ELK KFE+ E ++++G+NLYVKNLDD+I D++
Sbjct: 256 ALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDER 315
Query: 338 LKELFSEFG 346
L++ F++FG
Sbjct: 316 LRKEFAQFG 324
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 152/291 (52%), Gaps = 21/291 (7%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L + FST G +L +V D + + S GY +V F A+ A+D
Sbjct: 16 ASLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N + + + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 76 TMNFDTIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 131
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S ++ D G S+ +GFV+F+ + A ++E +NG + K+ +VG+ + ER
Sbjct: 132 SCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRER------ 184
Query: 307 KFEQSLKETADKFEGLN-LYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGS 364
L+ DK N +YVKN + I+D+ L+++F +G I S KVM D +G +G
Sbjct: 185 -----LEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGF 239
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR 413
GFV+F E A KA+ +NG K LYV AQ+K ER+A L +F ++R
Sbjct: 240 GFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIR 290
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 27/228 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S + VC + +R GYG+V++ A A++
Sbjct: 105 NVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHGSR---GYGFVHFETEEAARIAIE 161
Query: 100 ELNFTPLNGKPIRI--MYSYRD------PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
++N LNGK + + S R+ +RK N+++KN + I+++ L D F +
Sbjct: 162 KVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRK--FNNVYVKNFSEEINDETLRDMFEPY 219
Query: 152 GNILSCKVATDSLGQSRGYGF-VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
G I+S KV TD V F++ E+A+ A++ LNG + K ++VG +K ER+
Sbjct: 220 GKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQ 279
Query: 211 STADKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIIT 246
+ + R N N+YVKNL + ++ L+K F +FG T
Sbjct: 280 AELKEKFERIRMERINRYQGVNLYVKNLDDNIDDERLRKEFAQFGFQT 327
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 584 DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR-NVAQQQATGPSPTD 637
D A K+TGMLLE+D +E+LH+LES E+L+AKV EA+ VL+ + A++ AT P +
Sbjct: 408 DLAGKITGMLLEIDNSELLHMLESQESLEAKVKEAVAVLQAHQAKESATTTKPAE 462
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 214/520 (41%), Positives = 296/520 (56%), Gaps = 65/520 (12%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K+ATD G+S+G+GFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTT 231
F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+ + N+YVKN++ TT
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ + +F +FG I S ++ +DADGK K FGFVN+++ +DA ++VEALN + ++ YV
Sbjct: 121 DEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYV 180
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+KL+E F+ +GTITS
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSA 240
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQ 411
KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+AQRK+ RR SQ
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRR-----SQ 295
Query: 412 MRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPG 471
+ + R M A G +PP + G+ P VP P
Sbjct: 296 LAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPP---------MFYGVMPPRGVPFNGPN 346
Query: 472 QQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPG 531
Q P G G M P+ R + PV GVP
Sbjct: 347 PQQMNPMGGMPKNG---------------MPPQFR-----------NGPVYGVP------ 374
Query: 532 PYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVD--QLEHDNAAKV 589
GG P +Q Q ++QR LGE LY V + A K+
Sbjct: 375 --PQGGFPRNANDNNQFYQ-------------QKQRQALGEQLYKKVSAKTSNEEAAGKI 419
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
TGM+L++ EV LLE+ E + EA + ++Q
Sbjct: 420 TGMILDLPPQEVFPLLENDELFEQHYKEASAAYESFKKEQ 459
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 156/288 (54%), Gaps = 19/288 (6%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ S ++++ +L +++ LYD F+ G ++S ++ D +S G+G+V++ A
Sbjct: 10 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 68
Query: 95 TRALDELNFTPLNGKPI----RIMYSYRDPTIRKSGAG--NIFIKNLDKSIDNKALHDTF 148
A+D LN LNG+ I + RD + ++ A N+++KN++ ++ D F
Sbjct: 69 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQDLF 128
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG I+S + D+ G+ +G+GFV ++N E A A++ LN LN ++++VG +K E
Sbjct: 129 IQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNE 188
Query: 209 RESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
R K ++ N++VKNL ++ ++ L++ F +G ITS VMR +G
Sbjct: 189 RMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENG 248
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
KSK FGFV F P++A +++ N + K YV AQ+K R +L
Sbjct: 249 KSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 296
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD SV+D +L + F G + S +V R +S G+G+V ++ EAT
Sbjct: 207 KYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEAT 265
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 266 KAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 304
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 171/288 (59%), Positives = 226/288 (78%), Gaps = 4/288 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCK+ +D G SRGYGFV
Sbjct: 1 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFV 59
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADK-TRFNNVYVKNLSETTT 231
F+ EE+A++AI+K+NGMLLN K+VFVG F+ ++ER E DK +FNNVY+KN SE
Sbjct: 60 HFETEEAARNAIEKVNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEID 119
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ LK F FG I S VM DGK + FGFV++++P+ A ++V +N K F++K YV
Sbjct: 120 DEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYV 179
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQK+ ER+ ELK KF++ +E ++++G+NLYVKNLDDSI D+KL++ FS FGTITS
Sbjct: 180 GRAQKRAERQAELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSA 239
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
KVM + G S+G GFV FS+ EEA+KA+TEMNG+++V+KPLYVALAQR
Sbjct: 240 KVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 155/275 (56%), Gaps = 23/275 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S ++ D R GYG+V++ A A+++
Sbjct: 16 NVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHGSR--GYGFVHFETEEAARNAIEK 73
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSG-----AGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R + + G N++IKN + ID++ L F TFG I
Sbjct: 74 VNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEIDDEKLKIWFETFGKI 133
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
+S KV T G+ RG+GFV ++ E+A+ A+ ++N +K ++VG ++ ER++
Sbjct: 134 ISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKRAERQAEL- 192
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K +F+ N+YVKNL ++ ++ L+K F FG ITS VM + G+SK F
Sbjct: 193 KDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVMTEG-GRSKGF 251
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
GFV F P++A ++V +NG+ K YV AQ+
Sbjct: 252 GFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 18/222 (8%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ + K+ NV++KNL ++ L F FG I S ++ D G S+ +GFV+F+
Sbjct: 4 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFE 62
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN-LYV 326
+ A ++E +NG + K+ +VG+ + ER L++ DK + N +Y+
Sbjct: 63 TEEAARNAIEKVNGMLLNGKKVFVGRFMNRRER-----------LEQMGDKMKKFNNVYI 111
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KN + I D+KLK F FG I S KVM +G RG GFV++ E A KA+TEMN K
Sbjct: 112 KNFSEEIDDEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKT 171
Query: 387 VVSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPV 426
K LYV AQ++ ER+A L +F +++ RM Y V
Sbjct: 172 FEEKTLYVGRAQKRAERQAELKDKFDRLKQ---ERMNRYQGV 210
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 206 RYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVMTEGG--RSKGFGFVCFSSPEEAT 263
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 264 KAVTEMNGRIIVAKPLYVALAQR 286
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 179/365 (49%), Positives = 248/365 (67%), Gaps = 4/365 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V + L+ F+ +G V+S+R+CRD TR SLGY YVN+ +A +ALD
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALDT 70
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG ILS KV
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
+D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+ + + F
Sbjct: 131 SDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRSKASEF 189
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD + A ++VE
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEE 249
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG+ + + +V +AQKK ER+ ELK FEQ KE + + LYVKNLDD+I D+KL
Sbjct: 250 MNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEKL 309
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG+I+ KVM++ G S+G G + FS+ E+A KA+TEMNG+++ SKPL +ALAQ
Sbjct: 310 RNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQ 368
Query: 399 RKEER 403
E R
Sbjct: 369 CSELR 373
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 165/291 (56%), Gaps = 18/291 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSR-GYGFVQFDNEESAKSAID 186
++++ +L + L FST G +LS ++ D + +S GY +V F + A+ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRS 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GF
Sbjct: 185 K--------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPP 415
V+F + E A KA+ EMNG+ + + ++VA AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKE 285
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 100/173 (57%), Gaps = 18/173 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D +L D+F++ G+ +SV+V D S+ +S G+G+V++++ A +A++
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N +NG+ I ++ + IR +++KNLD +ID++
Sbjct: 249 EMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEK 308
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
L + FS+FG+I KV + GQS+G+G + F + E A A+ ++NG +L K
Sbjct: 309 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTEMNGRILGSK 360
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 26/199 (13%)
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAA 273
K R ++YV +L TED L + F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQ 65
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLYVKNL 329
++++ +N FD +KGK + + D + G+ N+++KNL
Sbjct: 66 KALDTMN---FDI-----------------IKGKSIRLMWSQRDAYLRRSGIGNVFIKNL 105
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK++
Sbjct: 106 DKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQG 164
Query: 390 KPLYVALAQRKEERRARLQ 408
++V + +++R A L+
Sbjct: 165 CKVFVGRFKSRKDREAELR 183
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 180/373 (48%), Positives = 251/373 (67%), Gaps = 9/373 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+ C RSLGY YVN+ +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSI-TCHP----RSLGYAYVNFLQLAD 58
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLD+SIDNK L++ FS FG
Sbjct: 59 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 118
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 119 ILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEF 177
Query: 214 DKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F NVY+KN + ++ LK++F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 178 QNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 237
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+VE +NGK + + +VG+AQKK ER+ ELK FEQ E + G LY+KNLD+
Sbjct: 238 AKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDE 297
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+AEEA+KA+TEMNG+++ SKP
Sbjct: 298 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKP 356
Query: 392 LYVALAQRKEERR 404
L +ALAQ+ ER+
Sbjct: 357 LNIALAQKPXERK 369
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 21/290 (7%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FS G +LS SLG Y +V F A+ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSITCHPRSLG----YAYVNFLQLADAQKALDT 65
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N L+ K + L +R++ K+ NV++KNL + L + F FG I S
Sbjct: 66 MNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILS 121
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G S+ + FV+F + A R++E +NG D +VG+ + + +RE E + K
Sbjct: 122 SKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEFQNK 180
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
E N+Y+KN D + D++LKE+FS++G S KVM D +G S+G GFV
Sbjct: 181 ----------AHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFV 230
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPP 415
+F + E A +A+ EMNGK + + L+V AQ+K ER+A L+ F Q++
Sbjct: 231 SFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHE 280
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/384 (45%), Positives = 250/384 (65%), Gaps = 24/384 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S+YVGDLD ++N+ QL +LF G +++VRVCRD+ T+RSLGYGYVN++ H A RA++
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERAIES 85
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + K +R+M+ RDP++R SG GN+F+KNL+K +D+K+LHD F+ FG+ILSCKV
Sbjct: 86 MNFRRVGDKCVRLMWQQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVM 145
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGML----LNDKQVFVGPFLRKQERESTADKT 216
D G+SRGYGFV F +E SAK AI K+NG + K ++V F+R+ R + A
Sbjct: 146 EDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA-ALVA 204
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+K + T ++ ++ F +FG ITS A +D G + F F NF+ DDA ++V
Sbjct: 205 NFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAV 262
Query: 277 EALNGKKFD-----DKEWYVGKAQKKYEREMELKGKF--EQSLKETADKFEGLNLYVKNL 329
EA++ D ++ YV +AQ + ER + L+ K+ QSL G NLYV+N
Sbjct: 263 EAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSL--------GNNLYVRNF 314
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D + L ELF E+G + SC+VM +G SRG GFV+FS A+EA+ AL EMNG+M+
Sbjct: 315 DPEFTGADLLELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALREMNGRMLNG 374
Query: 390 KPLYVALAQRKEERRA--RLQFSQ 411
KPL V +AQR+++R RLQF Q
Sbjct: 375 KPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 18/185 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + +VN + + F + G + S C+D S R + + N+ +A +A++
Sbjct: 207 TNVYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKSGR---VFAFCNFEKHDDAVKAVE 263
Query: 100 ELNFTPLNG--KPIRIMY-------SYRDPTIR------KSGAGNIFIKNLDKSIDNKAL 144
++ ++G P +Y S R +R +S N++++N D L
Sbjct: 264 AMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADL 323
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
+ F +G++ SC+V G SRG+GFV F N + A +A+ ++NG +LN K + V
Sbjct: 324 LELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Query: 205 RKQER 209
R+ +R
Sbjct: 384 RRDQR 388
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
Q + +LYV + D + L +LF + G V S RV S S G+G+V+++ A EA
Sbjct: 302 HQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMMSESG-ASRGFGFVSFSNADEA 360
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 361 NAALREMNGRMLNGKPLIVNIAQR 384
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 558 LANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 617
L + SP++QR LG+ L+ V ++ + A K+TGM LEM+ E LL + L+ +V E
Sbjct: 484 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMNPKEAYELLNDQKRLEERVTE 543
Query: 618 AMEVLR 623
A+ VL+
Sbjct: 544 ALCVLK 549
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 215/514 (41%), Positives = 293/514 (57%), Gaps = 71/514 (13%)
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
+CKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 1 ACKVVRDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 59
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA
Sbjct: 60 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 119
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I
Sbjct: 120 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 179
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLY
Sbjct: 180 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 238
Query: 394 VALAQRKEERRARLQFSQMR-------------------PPVG----------PRMPMYP 424
VALAQRKEER+A L M+ PP G R YP
Sbjct: 239 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYP 298
Query: 425 P------------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQ 469
P A G F I P P+P F MRP + VP V
Sbjct: 299 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVM 351
Query: 470 PGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
Q+ + G P A P + R +P+ Y+Y G P + P +
Sbjct: 352 STQRVANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTM 406
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
P A Q AS LA+A P++Q+ +LGE L+PL+ + A K+
Sbjct: 407 QQP-----------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKI 455
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 456 TGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 489
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 150/263 (57%), Gaps = 21/263 (7%)
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSG 126
+ +V RD + S GYG+V++ A RA++++N LN + + + + R + G
Sbjct: 1 ACKVVRDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 58
Query: 127 A-----GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181
A N++IKN + +D++ L D F FG LS KV TD G+S+G+GFV F+ E A
Sbjct: 59 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 118
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSET 229
+ A+D++NG LN KQ++VG +K ER++ + TR+ N+YVKNL +
Sbjct: 119 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 178
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
++ L+K F FG ITS VM + G+SK FGFV F P++A ++V +NG+ K
Sbjct: 179 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 237
Query: 290 YVGKAQKKYEREMELKGKFEQSL 312
YV AQ+K ER+ L ++ Q +
Sbjct: 238 YVALAQRKEERQAHLTNQYMQRM 260
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S + S G+G+V++ +
Sbjct: 61 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 117
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N LNGK I R + I + N+++KNLD
Sbjct: 118 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 177
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 178 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 236
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 237 LYVALAQRKEERQA-----HLTNQYMQRMA 261
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 338 bits (867), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 174/383 (45%), Positives = 249/383 (65%), Gaps = 20/383 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDLD ++N+ QL +LF G +++VRVCRD+ T+RSLGYGYVN++ A +A++
Sbjct: 25 ASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + K +R+M+ RDP +R SG GN+F+KNL+K +D+K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML----LNDKQVFVGPFLRKQERESTADK 215
D G+SRGYGFV F +E SAK AI K+NG + K ++V F+R+ R + A
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA-ALV 203
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+K + T +D ++K F +FG ITS A +D G + F F NF+ DDA ++
Sbjct: 204 ANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 276 VEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
VEA++ D ++ YV +AQ + ER + L+ K+ Q + G NLYV+N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQH------QALGNNLYVRNFD 315
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+ L ELF E+G + SC+VM +G+SRG GFV+FS A+EA+ AL EMNG+M+ K
Sbjct: 316 PEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 391 PLYVALAQRKEERR--ARLQFSQ 411
PL V +AQR+++R RLQF Q
Sbjct: 376 PLIVNIAQRRDQRYTIVRLQFQQ 398
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
Q + +LYV + D + L +LF + G+V S RV S S G+G+V+++ A EA
Sbjct: 302 HQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESG-VSRGFGFVSFSNADEA 360
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 361 NAALREMNGRMLNGKPLIVNIAQR 384
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 558 LANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 617
L + SP++QR LG+ L+ V ++ D A K+TGM LEM E LL + L+ +V E
Sbjct: 490 LESMSPQEQRAALGDRLFLKVYEIPPDVAPKITGMFLEMKPKEAYELLNDQKRLEERVTE 549
Query: 618 AMEVLRNVAQQQA 630
A+ VL+ A Q A
Sbjct: 550 ALCVLK--AHQTA 560
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 338 bits (867), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 174/383 (45%), Positives = 249/383 (65%), Gaps = 20/383 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDLD ++N+ QL +LF G +++VRVCRD+ T+RSLGYGYVN++ A +A++
Sbjct: 25 ASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + K +R+M+ RDP +R SG GN+F+KNL+K +D+K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML----LNDKQVFVGPFLRKQERESTADK 215
D G+SRGYGFV F +E SAK AI K+NG + K ++V F+R+ R + A
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA-ALV 203
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+K + T +D ++K F +FG ITS A +D G + F F NF+ DDA ++
Sbjct: 204 ANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 276 VEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
VEA++ D ++ YV +AQ + ER + L+ K+ Q + G NLYV+N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQH------QALGNNLYVRNFD 315
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+ L ELF E+G + SC+VM +G+SRG GFV+FS A+EA+ AL EMNG+M+ K
Sbjct: 316 PEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 391 PLYVALAQRKEERRA--RLQFSQ 411
PL V +AQR+++R RLQF Q
Sbjct: 376 PLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
Q + +LYV + D + L +LF + G+V S RV S S G+G+V+++ A EA
Sbjct: 302 HQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESG-VSRGFGFVSFSNADEA 360
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 361 NAALREMNGRMLNGKPLIVNIAQR 384
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 558 LANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 617
L + SP++QR LG+ L+ V ++ + A K+TGM LEM E LL + L+ +V E
Sbjct: 490 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRLEERVTE 549
Query: 618 AMEVLRNVAQQQA 630
A+ VL+ A Q A
Sbjct: 550 ALCVLK--AHQTA 560
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 175/385 (45%), Positives = 249/385 (64%), Gaps = 24/385 (6%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDLD ++N+ QL +LF G +++VRVCRD+ T+RSLGYGYVN++ A +A++
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + K +R+M+ RDP +R SG GN+F+KNL+K +D+K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML----LNDKQVFVGPFLRKQERESTADK 215
D G+SRGYGFV F +E SAK AI K+NG + K ++V F+R+ R + A
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA-ALV 203
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+K + T ++ ++K F +FG ITS A +D G + F F NF+ DDA ++
Sbjct: 204 ANFTNVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 276 VEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKF--EQSLKETADKFEGLNLYVKN 328
VEA++ D ++ YV +AQ + ER + L+ K+ QSL G NLYV+N
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSL--------GNNLYVRN 313
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
D + L ELF E+G + SC+VM +G SRG GFV+FS A+EA+ AL EMNG+M+
Sbjct: 314 FDPEFTGADLLELFKEYGEVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLN 373
Query: 389 SKPLYVALAQRKEERRA--RLQFSQ 411
KPL V +AQR+++R RLQF Q
Sbjct: 374 GKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
Q + +LYV + D + L +LF + G+V S RV S S G+G+V+++ A EA
Sbjct: 302 HQSLGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESG-ASRGFGFVSFSNADEA 360
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 361 NAALREMNGRMLNGKPLIVNIAQR 384
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 558 LANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 617
L + SP++QR LG+ L+ V ++ + A K+TGM LEM E LL + L+ +V E
Sbjct: 490 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRLEERVTE 549
Query: 618 AMEVLR 623
A+ VL+
Sbjct: 550 ALCVLK 555
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 172/377 (45%), Positives = 251/377 (66%), Gaps = 26/377 (6%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDLD ++N+ QL D+F G +++VRVCRD+ T+RSLGYGYVNY+ + A++A++
Sbjct: 21 ASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDDVNSASKAME 80
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
ELNF + K IRIM+ RDP +R SG+GNIF+KNL + +D++ L F FG ILSCKV
Sbjct: 81 ELNFKRVGEKCIRIMWQQRDPALRYSGSGNIFVKNLKEEVDSRELSLIFKKFGEILSCKV 140
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ--------VFVGPFLRKQERES 211
D G+SRGYGFV F ++++AK+AI+K+NG DK+ ++V F+R+ R +
Sbjct: 141 MDDESGKSRGYGFVHFKDDDAAKAAIEKMNG----DKEHADADKAALYVANFIRRNARLA 196
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+K L T +D ++K F +FG ITS A+ +D +G++ F F NF+ DD
Sbjct: 197 -ALVANFTNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNGRA--FAFCNFEKHDD 253
Query: 272 AARSVEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
A +++EA + ++ + ++ YV +AQ + ER + L+ K+ Q + G NLYV
Sbjct: 254 AVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQC------QSLGNNLYV 307
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
+N D ++ L ELF E+G I SC+VM D NGISRG GFV+F A++A+ AL EMNG+M
Sbjct: 308 RNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFENADQANAALREMNGRM 367
Query: 387 VVSKPLYVALAQRKEER 403
+ KPL V +AQR+++R
Sbjct: 368 LNGKPLVVNIAQRRDQR 384
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
A L S ++QR LG+ LY V +L D+A K+TGM LEM+ E L LL +P+ + K
Sbjct: 492 AEDLQQMSVDEQRAALGDRLYIKVHELAPDHAPKITGMFLEMNPKEALALLSNPKLMHEK 551
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 552 VTEALCVLK 560
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 334 bits (857), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 168/292 (57%), Positives = 221/292 (75%), Gaps = 4/292 (1%)
Query: 103 FTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD 162
F + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D
Sbjct: 1 FFVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 60
Query: 163 SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNN 220
G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ER E A F N
Sbjct: 61 ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTN 119
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VY+KN E ++ LK+IF ++G S VM D GKSK FGFV+F+ +DA R+V+ +N
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMN 179
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD + D++L++
Sbjct: 180 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 239
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPL
Sbjct: 240 EFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 154/260 (59%), Gaps = 21/260 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 27 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEK 84
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + FS +G
Sbjct: 85 MNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFSKYGPA 144
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS +V TD G+S+G+GFV F+ E A+ A+D++NG +N KQV+VG +K ER++
Sbjct: 145 LSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELK 204
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 205 RKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 263
Query: 263 FVNFDDPDDAARSVEALNGK 282
FV F P++A ++V +NG+
Sbjct: 264 FVCFSSPEEATKAVTEMNGR 283
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 16/221 (7%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ + K+ N+++KNL ++ L F FG I S V+ D +G SK +GFV+F+
Sbjct: 15 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 73
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ A R++E +NG +D++ +VG+ + + ER E+ + A +F N+Y+K
Sbjct: 74 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGAR--------AKEF--TNVYIK 123
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
N + + D+KLKE+FS++G S +VM D +G S+G GFV+F E+A +A+ EMNGK +
Sbjct: 124 NFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEM 183
Query: 388 VSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPV 426
K +YV AQ+K ER+ L +F QM+ RM Y V
Sbjct: 184 NGKQVYVGRAQKKGERQTELKRKFEQMKQ---DRMTRYQGV 221
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 101/180 (56%), Gaps = 22/180 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L ++F++ G +S+RV D S + S G+G+V++ +
Sbjct: 114 AKEF--TNVYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGK-SKGFGFVSFERHED 170
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A RA+DE+N +NGK + + + + D R G N+++KNLD
Sbjct: 171 AQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGV-NLYVKNLD 229
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+D++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 230 DGLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 288
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 217 RYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 274
Query: 96 RALDELNFTPLNGKPI 111
+A+ E+N + KP+
Sbjct: 275 KAVTEMNGRIVATKPL 290
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 179/358 (50%), Positives = 238/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK+IF E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KL+E
Sbjct: 261 GKSIDGKALYVGRAQKKIERLAELRRRFERLKVKEKSRPPGVPVYIKNLDETIDDEKLRE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+MV SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEEATKAVGEMNGRMVGSKPLHVTLGQ 377
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 163/307 (53%), Gaps = 19/307 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKE+FSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPVA 427
T E A KA+ +++GK + K LYV AQ+K ER A L +F +++ R P P
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELRRRFERLKVKEKSRPPGVPVYI 306
Query: 428 PGLGQQL 434
L + +
Sbjct: 307 KNLDETI 313
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 175/401 (43%), Positives = 252/401 (62%), Gaps = 21/401 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDLD V + L +LF G +++VRVCRD+ T+RSLGYGYVN+N+ A +A++
Sbjct: 30 SLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAKAMEA 89
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + K +RIM+ RDPT+R SG GNIF+KNL +D++ L F FG+ILSCKV
Sbjct: 90 LNFKRVGDKCMRIMWQQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIFKKFGDILSCKVM 149
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ-----VFVGPFLRKQERESTADK 215
D G+SRGYGFV F N+ +AK AI+ +NG + + ++V F+R+ R +T
Sbjct: 150 EDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANFIRRNARLATL-V 208
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+K + T ++ ++K F +FG ITS+A +D +G + F F NF+ +DA ++
Sbjct: 209 ANFTNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKA 266
Query: 276 VEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
+EA + + D ++ YV +AQ + ER + L+ K+ Q + G NLYV+N D
Sbjct: 267 IEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC------QTLGNNLYVRNFD 320
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+++ L ELF E+G I SC+VM D NG SRG GFV+F A++A+ AL EMNG+M+ K
Sbjct: 321 PEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGK 380
Query: 391 PLYVALAQRKEER--RARLQFSQMRPPVGPRMPMYPPVAPG 429
PL V +AQR+++R RLQF Q + RM P V+ G
Sbjct: 381 PLIVNIAQRRDQRFMMLRLQFQQRLQAMMRRMHSMPFVSHG 421
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 148/294 (50%), Gaps = 30/294 (10%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEE 179
T + ++++ +LD + L + F FG IL+ +V D + Q S GYG+V F++ +
Sbjct: 22 TTKALQVASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHD 81
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
SA A++ LN + DK + + Q+R+ T + N++VKNL +L IF
Sbjct: 82 SAAKAMEALNFKRVGDKCMRI----MWQQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIF 137
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-FDDKE----WYVGKA 294
+FG I S VM D +GKS+ +GFV+F + + A ++E +NG+K D+E YV
Sbjct: 138 KKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANF 197
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
++ R L F N+Y+K + ++ + +++ FS+FG ITS
Sbjct: 198 IRRNARLATLVANFT-------------NVYIKQVLPTVDKEVIEKFFSKFGGITSSATC 244
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKP---LYVALAQRKEER 403
+D NG R F F E+A KA+ + + V V P LYV AQ + ER
Sbjct: 245 KDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSER 296
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 96/185 (51%), Gaps = 18/185 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + +V+ + F++ G + S C+D + R + + N+ +A +A++
Sbjct: 212 TNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNGR---VFAFCNFEKHEDAVKAIE 268
Query: 100 ELNFTPLNGK--PIRIMY-------SYRDPTIR------KSGAGNIFIKNLDKSIDNKAL 144
+ ++G P +Y S R +R ++ N++++N D + L
Sbjct: 269 ASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENL 328
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
H+ F +G I SC+V TD+ G SRG+GFV F+N + A +A+ ++NG +LN K + V
Sbjct: 329 HELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQ 388
Query: 205 RKQER 209
R+ +R
Sbjct: 389 RRDQR 393
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
A L + S ++QR LG+ LY V ++ D+A K+TGM LEMD E LL + L+ K
Sbjct: 496 AEDLRSMSVDEQRAALGDRLYIKVFEIAPDHAPKITGMFLEMDLKEAFTLLTNQRLLQEK 555
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 556 VIEALCVLK 564
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q + +LYV + D + L++LF + G + S RV D + S G+G+V++ A +A
Sbjct: 308 QTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTD-ANGNSRGFGFVSFENADQAN 366
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 367 AALREMNGRMLNGKPLIVNIAQR 389
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 176/366 (48%), Positives = 249/366 (68%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ + SLYVGDL V + L+ FN +G V+S+R+CRDL +RRSLGY YVN+ +A
Sbjct: 6 KYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG IL
Sbjct: 66 KALDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIL 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
S KV +D G SRGYGFV + ++ +A AI+++NG LL D VFV F +++RE+ +
Sbjct: 126 SSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREAELRS 184
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+ F NVY+KNL + ++ LK IF ++G S VM+D +GKSK FGFV+F + + A
Sbjct: 185 KTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYNHEAAR 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+VE +NG+ + + +VG+AQKK ER+ ELK KFEQ KE + LY+KNLD++I
Sbjct: 245 NAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAKLYIKNLDETI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+ L+ FS FG+I KVM++ G S+G G + F + E A+KA+ EMNG+++ SK L
Sbjct: 305 DDETLRREFSSFGSICRVKVMQEA-GQSKGFGLICFFSPEAAAKAMAEMNGRILGSKALN 363
Query: 394 VALAQR 399
+AL Q+
Sbjct: 364 IALGQK 369
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 166/295 (56%), Gaps = 18/295 (6%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAK 182
K A ++++ +L + + L F+T G +LS ++ D + + S GY +V F + A+
Sbjct: 6 KYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQ 65
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
A+D +N L+ K + L +R++ K+ NV++KNL ++ L + F F
Sbjct: 66 KALDTMNFDLIQGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G I S+ VM D +G S+ +GFV++ D A R++E +NGK D +V + + + +RE
Sbjct: 122 GKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREA 180
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ K E N+Y+KNL D++ D+ LK +FS++G S KVM+D NG S+
Sbjct: 181 ELRSKTS----------EFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSK 230
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPP 415
G GFV+F E A A+ EMNG+ + + ++V AQ+K ER+A L +F QM+
Sbjct: 231 GFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKE 285
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 173/366 (47%), Positives = 247/366 (67%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ + SLYVGDL V + L+ FN +G V+S+R+CRDL + RSLGYGYVN+ +A
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+AL+ +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG I+
Sbjct: 66 KALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIM 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV TD G S+GYGFV + ++ +A AI+++NG LL D +FV F +++RE+ +
Sbjct: 126 SSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELRE 184
Query: 216 --TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN + ++ L+ +F ++G S VM+DA GKSK FGFV+FD A
Sbjct: 185 KPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAK 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+VE +NG+ + + +VG+AQKK ER+ ELK FEQ KE + LY+KNLDD+I
Sbjct: 245 NAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+ L++ FS FG+I KVM++ G S+G G + F + E A+KA+ EMNG+++ SKPL
Sbjct: 305 DDETLRKEFSVFGSICRVKVMQEA-GQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLN 363
Query: 394 VALAQR 399
+AL Q+
Sbjct: 364 IALGQK 369
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 163/295 (55%), Gaps = 18/295 (6%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAK 182
K A ++++ +L + + L F+T G +LS ++ D + S GYG+V F A+
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
A++ +N L+ K + L +R++ K+ NV++KNL ++ L + F F
Sbjct: 66 KALETMNFDLIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G I S+ VM D +G SK +GFV++ D A R++E +NGK D +V + + + +RE
Sbjct: 122 GKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREA 180
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ K E N+Y+KN D + D+ L+ +FS++G S KVM+D +G S+
Sbjct: 181 ELREK----------PAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK 230
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPP 415
GFV+F + + A A+ +MNG+ + + ++V AQ+K ER+A L+ F QM+
Sbjct: 231 RFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKE 285
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 104/203 (51%), Gaps = 26/203 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
S K R ++YV +L E TED L + F G + S + RD +S +G+VNF
Sbjct: 2 SVETKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQV 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLY 325
DA +++E +N FD +KGK S ++ + G+ N++
Sbjct: 62 GDAQKALETMN---FD-----------------LIKGKSIRLMWSQRDACLRKSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G GFV + A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQ 408
++ L+VA + +++R A L+
Sbjct: 161 LLRDSTLFVARFKSRKDREAELR 183
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 325 bits (833), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 178/361 (49%), Positives = 238/361 (65%), Gaps = 5/361 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LKK+F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K VG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEASKA+ EMNG++V SK L+V L Q +
Sbjct: 321 EFSLFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQAR 379
Query: 401 E 401
Sbjct: 380 H 380
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D I D+KLK+LFSE+G S KV+RD G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPVA 427
T E A KA+ E++GK + K L V AQ+K ER A L +F +++ R P P
Sbjct: 247 ETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYI 306
Query: 428 PGLGQQL 434
L + +
Sbjct: 307 KNLDETI 313
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 156/280 (55%), Gaps = 26/280 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD S+++ L+ LF+ G ++S +V C D ++ GY YV++++ A RA+
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIW 163
Query: 100 ELNFTPLNGKPIRI-MYSY---RDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+N LN + + + + + R +R ++ N+F+KN ID++ L FS +G
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYG 223
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----------P 202
S KV D+ G+S+G+GFV+++ E+A+ A+ +L+G ++ K + VG
Sbjct: 224 PTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAE 283
Query: 203 FLRKQERESTADKTRFNNV--YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
R+ ER DKTR V Y+KNL ET ++ LK+ F FG I+ VM + G+ K
Sbjct: 284 LRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEV-GQGKG 342
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYV--GKAQKKY 298
FG V F ++A+++V +NG+ K +V G+A+ ++
Sbjct: 343 FGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQARHRW 382
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 180/364 (49%), Positives = 244/364 (67%), Gaps = 5/364 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ +LYVGDLD V + LY F G + R+CRD TR LGYGYVN+ +A A
Sbjct: 1 LKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWA 60
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ +NF +NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSC
Sbjct: 61 LNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 120
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TAD 214
KV D G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D
Sbjct: 121 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 179
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+ F NV+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A +
Sbjct: 180 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 239
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V L+GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+
Sbjct: 240 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIN 299
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+KLKE FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V
Sbjct: 300 DEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 358
Query: 395 ALAQ 398
L Q
Sbjct: 359 TLGQ 362
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 17/278 (6%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKL 188
+++ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +
Sbjct: 5 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 64
Query: 189 NGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
N L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 65 NFDLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 119
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 120 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR-- 176
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV
Sbjct: 177 -------TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 229
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
+ T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 230 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 267
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 180/358 (50%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV +D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVSDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 HG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD+SISD+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESISDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GHGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVSDDHG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKELFSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 215/560 (38%), Positives = 311/560 (55%), Gaps = 68/560 (12%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
G + K +++ + K +H L VA D G S+GYGFV F+ ++SA +I+K
Sbjct: 404 GGVQTKCKEQNSNIKYIHCYAHCLNLALVDSVAQDETGNSKGYGFVHFETKQSATQSIEK 463
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLLN K+VFVG F+ + +RE + + NVY+KN+ E E +L ++F ++G I
Sbjct: 464 VNGMLLNGKKVFVGRFVGRNDREKELGQQAKLYTNVYIKNIDENVNEKELFEMFKKYGTI 523
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMEL 304
TS VM DG S+ FGFV F+DP +A ++V L+GKK + K +YV +AQKK ER+ EL
Sbjct: 524 TSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQEL 583
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K KFEQ E ++++G+NLYVKNLDD+I D++L+ FS FGTI S KVM D +G S+G
Sbjct: 584 KRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMD-DGRSKGF 642
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGPRM-- 420
GFV FS+ EEA+KA+T+MNG++V +KPLYV LAQRK++R+A L Q+SQ + RM
Sbjct: 643 GFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQRNTNM--RMQS 700
Query: 421 --PMYPPVA------PGLGQ-QLFYGQGPPI-IPPQPGFGYQQQLVPGM-------RPNY 463
P+Y P A P + Q Q FYG I QP + +Q Q+ G PN
Sbjct: 701 IGPIYQPGASNGYFVPTIPQPQYFYGPTQMTQIRSQPRWAFQSQVRAGTPQTAAPGYPNM 760
Query: 464 FVPMVQPGQQNQRPGGRRSGTG----------PMQQAQQPIP-------LMQPRMLPRGR 506
G + P G+++ P+ AQQ +P + P G
Sbjct: 761 ATQHQNIGARAPVPAGQQAALARNVMVDTNARPISTAQQKMPGAVSAGSVHVPGARDTGS 820
Query: 507 IYRYPPGCNIPDVPVAGVPGGMLPG---------PYDIGGMPFRDAAFSQPM-------- 549
Y+Y P P G+ G PG P GM + +Q M
Sbjct: 821 GYKYTPNMRNPLSQDQGI-GQAQPGQAQGMGQSQPGQAQGMGQAQSGQAQGMEQVQPDKA 879
Query: 550 ------QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLH 603
Q A+ LA A PE Q+ +LGE L+PL++++ + K+TGMLLE+D +++LH
Sbjct: 880 AVHVYGQEPLTATMLATAKPEDQKQMLGERLFPLIERMYPELTGKITGMLLEIDNSDLLH 939
Query: 604 LLESPEALKAKVAEAMEVLR 623
+LE E+LK +V +A+ +L+
Sbjct: 940 MLEHHESLKNQVEKAVAMLQ 959
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 142/253 (56%), Gaps = 20/253 (7%)
Query: 77 TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNI 130
T S GYG+V++ AT++++++N LNGK + + + R+ ++ G N+
Sbjct: 440 TGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQQAKLYTNV 499
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
+IKN+D++++ K L + F +G I SCKV G SRG+GFV F++ + A+ A+ +L+G
Sbjct: 500 YIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHG 559
Query: 191 MLLND-KQVFVGPFLRKQERESTADKT-------RFN-----NVYVKNLSETTTEDDLKK 237
+ K +V +K ER+ + R N N+YVKNL +T ++ L++
Sbjct: 560 KKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRR 619
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S VM D DG+SK FGFV F P++A ++V +NG+ K YV AQ+K
Sbjct: 620 EFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRK 678
Query: 298 YEREMELKGKFEQ 310
+R+ L ++ Q
Sbjct: 679 KDRKAHLDSQYSQ 691
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 21/193 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRAL 98
T++Y+ ++D +VN+ +L+++F + G + S +V +D + R G+G+V + EA +A+
Sbjct: 497 TNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSR--GFGFVAFEDPKEAEKAV 554
Query: 99 DELN-----------------FTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
EL+ T + R Y+ I + N+++KNLD +ID+
Sbjct: 555 TELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDD 614
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
+ L FS FG I S KV D G+S+G+GFV F + E A A+ +NG ++ K ++V
Sbjct: 615 ERLRREFSAFGTIKSAKVMMDD-GRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVT 673
Query: 202 PFLRKQERESTAD 214
RK++R++ D
Sbjct: 674 LAQRKKDRKAHLD 686
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F+ G + S +V D RS G+G+V +++ EAT
Sbjct: 597 RYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMD--DGRSKGFGFVYFSSPEEAT 654
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ ++N + KP+ + + R
Sbjct: 655 KAVTDMNGRIVGTKPLYVTLAQR 677
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/366 (46%), Positives = 250/366 (68%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ + SLYVGDL V + L+ F+ +G V+S+R+CRDL ++RSLGY YVN+ ++A
Sbjct: 6 KYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+AL +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG I+
Sbjct: 66 KALVTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIM 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA-D 214
S KV TD G S+GYGFV + + +A AI+++NG LL + +FV F +++RE+ D
Sbjct: 126 SSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRD 184
Query: 215 K-TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
K T F NVY+KN + ++ L+++F ++G S VM+DA GKSK FGFV+FD + A
Sbjct: 185 KPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAK 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+VE +NG+ + + +VG+AQKK ER+ ELK FEQ KE + LY+KNLDD+I
Sbjct: 245 NAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+ L++ FS FG+I KVM++ G S+G G + F + E A+KA+ EMNG+++ SKPL
Sbjct: 305 DDETLRKEFSVFGSICRVKVMQEA-GQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLN 363
Query: 394 VALAQR 399
+AL Q+
Sbjct: 364 IALGQK 369
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 164/295 (55%), Gaps = 18/295 (6%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAK 182
K A ++++ +L + + L FST G +LS ++ D + Q S GY +V F A+
Sbjct: 6 KYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQ 65
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
A+ +N ++ K + L +R++ ++ NV++KNL ++ L + F F
Sbjct: 66 KALVTMNFDVIKGKSIR----LMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G I S+ VM D +G SK +GFV++ D A R++E +NGK + +V + + + +RE
Sbjct: 122 GTIMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREA 180
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ K E N+Y+KN D + D+KL+E+FS++G S KVM+D G S+
Sbjct: 181 ELRDK----------PTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSK 230
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPP 415
G GFV+F + E A A+ +MNG+ + + ++V AQ+K ER+A L+ F QM+
Sbjct: 231 GFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKE 285
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/405 (42%), Positives = 249/405 (61%), Gaps = 29/405 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDLD V + L +LF G +++VRVCRD+ T+RSLGYGY+N+N A +A++
Sbjct: 23 SLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAKAMEA 82
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + K +RIM+ RDP +R SG GN+F+KNL +D++ L F FG+ILSCKV
Sbjct: 83 LNFKRVGDKCMRIMWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFKKFGDILSCKVM 142
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ---------VFVGPFLRKQERES 211
D G+SRGYGFV F N+ +AK AI+ +NG DK ++V F+R+ R +
Sbjct: 143 EDEEGKSRGYGFVHFKNDNAAKEAIENMNG----DKDHADEEKKMGLYVANFIRRNARLA 198
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
T F NVY+K + T ++ ++K F FG ITS+A +D +G + F F NF+ +D
Sbjct: 199 TL-VANFTNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNG--RVFAFCNFEKHED 255
Query: 272 AARSVEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
A +++EA + + D ++ YV +AQ + ER + L+ K+ Q + G NLYV
Sbjct: 256 AVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC------QTLGNNLYV 309
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
+N D +++ L ELF E+G I SC+VM D NG SRG GFV+F A++A+ AL EMNG+M
Sbjct: 310 RNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAALREMNGRM 369
Query: 387 VVSKPLYVALAQRKEER--RARLQFSQMRPPVGPRMPMYPPVAPG 429
+ KPL V +AQR+++R RLQF Q + RM P V+ G
Sbjct: 370 LNGKPLIVNIAQRRDQRFMMLRLQFQQRLQAMMRRMHSMPFVSHG 414
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 145/294 (49%), Gaps = 30/294 (10%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEE 179
T + ++++ +LD + L + F FG IL+ +V D + Q S GYG++ F+N +
Sbjct: 15 TTKALQVASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHD 74
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
SA A++ LN + DK + + Q+R+ + NV+VKNL +L IF
Sbjct: 75 SAAKAMEALNFKRVGDKCMRI----MWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIF 130
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG-KKFDDKE----WYVGKA 294
+FG I S VM D +GKS+ +GFV+F + + A ++E +NG K D+E YV
Sbjct: 131 KKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGDKDHADEEKKMGLYVANF 190
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
++ R L F N+Y+K + ++ + +++ FS FG ITS
Sbjct: 191 IRRNARLATLVANFT-------------NVYIKQVLPTVDKEVIEKFFSRFGGITSSATC 237
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKP---LYVALAQRKEER 403
+D NG R F F E+A KA+ + + V V P LYV AQ + ER
Sbjct: 238 KDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSER 289
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + +V+ + F++ G + S C+D + R + + N+ +A +A++
Sbjct: 205 TNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNGR---VFAFCNFEKHEDAVKAIE 261
Query: 100 ELNFTPLNGK--PIRIMY-------SYRDPTIR------KSGAGNIFIKNLDKSIDNKAL 144
+ ++G P +Y S R +R ++ N++++N D + L
Sbjct: 262 ASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENL 321
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
H+ F +G I SC+V TD+ G SRG+GFV F N + A +A+ ++NG +LN K + V
Sbjct: 322 HELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAALREMNGRMLNGKPLIVNIAQ 381
Query: 205 RKQER 209
R+ +R
Sbjct: 382 RRDQR 386
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
A L S ++QR LG+ LY V ++ D+A K+TGM LEMD E LL + L+ K
Sbjct: 495 AEDLRTMSVDEQRAALGDRLYIKVFEIAPDHAPKITGMFLEMDLKEAFTLLNNQRLLQEK 554
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 555 VIEALCVLK 563
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q + +LYV + D + L++LF + G + S RV D + S G+G+V++ A +A
Sbjct: 301 QTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTD-ANGNSRGFGFVSFGNADQAN 359
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 360 AALREMNGRMLNGKPLIVNIAQR 382
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 321 bits (823), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 165/311 (53%), Positives = 221/311 (71%), Gaps = 7/311 (2%)
Query: 45 GDLDLSVNDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
GDLD SV + LY F++ + SV+VC D +T SLGYGYVN+N + +A A++ LN+
Sbjct: 18 GDLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNY 77
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
L GKP+RIM+S RDP+ R SG GN+F+KNLD+SIDNK L D FS FG +LSCKVA D+
Sbjct: 78 CKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA 137
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR-FNNVY 222
G S+GYGFVQF ++ S +A + NG L+ ++ + V PF+ + + DK+R F NVY
Sbjct: 138 SGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ----WDKSRVFTNVY 193
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
VKNL ET T+ DLK++FGEFG ITS VM+D +GKS+ FGFVNF+ + A ++E +NG
Sbjct: 194 VKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGV 253
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFE-QSLKETADKFEGLNLYVKNLDDSISDDKLKEL 341
D+KE +VG+AQ+K R +LK KFE + + +G+NLYVKNLDDS+ + KL+EL
Sbjct: 254 VVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEEL 313
Query: 342 FSEFGTITSCK 352
FSEFGTITSCK
Sbjct: 314 FSEFGTITSCK 324
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 150/295 (50%), Gaps = 25/295 (8%)
Query: 134 NLDKSIDNKALHDTFSTFGN-ILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
+LD S++ L+ FS F + I S KV D + G S GYG+V F++ AK+A++ LN
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNYC 78
Query: 192 LLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
L K + + ER+ + + NV+VKNL E+ L +F FG + S V
Sbjct: 79 KLKGKPMRIMF----SERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVA 134
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
RDA G SK +GFV F + NG ++ +V + G++++S
Sbjct: 135 RDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSR--------GQWDKS 186
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371
T N+YVKNL ++ +D LK LF EFG ITS VM+D G SR GFV F
Sbjct: 187 RVFT-------NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEK 239
Query: 372 AEEASKALTEMNGKMVVSKPLYVALAQRK----EERRARLQFSQMRPPVGPRMPM 422
AE A A+ +MNG +V K L+V AQRK E+ +A+ + ++ + R M
Sbjct: 240 AEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGM 294
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 19/224 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ QL D+F+ G+V+S +V RD S S GYG+V + + A +
Sbjct: 103 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTACNF 161
Query: 101 LNFTPLNGKPIRIM-YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T + + I + + R + N+++KNL ++ + L F FG I S V
Sbjct: 162 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 221
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRF 218
D G+SR +GFV F+ E+A +AI+K+NG+++++K++ VG RK R T D K +F
Sbjct: 222 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR--TEDLKAKF 279
Query: 219 N--------------NVYVKNLSETTTEDDLKKIFGEFGIITST 248
N+YVKNL ++ L+++F EFG ITS
Sbjct: 280 ELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 323
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 18/143 (12%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V T++YV +L + D+ L LF + G++ S V +D +S +G+VN+ A A A
Sbjct: 188 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTA 246
Query: 98 LDELNFTPLNGKPIRIMYSYR--------------DPTIR--KSGAG-NIFIKNLDKSID 140
++++N ++ K + + + R + IR K+ G N+++KNLD S+D
Sbjct: 247 IEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVD 306
Query: 141 NKALHDTFSTFGNILSCKVATDS 163
N L + FS FG I SCK A +S
Sbjct: 307 NTKLEELFSEFGTITSCKYACNS 329
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 321 bits (823), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 179/358 (50%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ E ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ + I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK V K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 321 bits (823), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 179/358 (50%), Positives = 238/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+ L FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNL + ++ LK++F E+G I S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD+SI D+KLKE
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SK L+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHVTLGQ 377
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 155/276 (56%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKNL D ++D+KLKELFSE+G I S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ E++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLA 282
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 279/488 (57%), Gaps = 38/488 (7%)
Query: 157 CKVA--TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-- 212
C+VA D G SRG+GFV F+ +E+A AI +NGMLLND++VFVG F +QERE+
Sbjct: 111 CRVAVVCDENG-SRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAELG 169
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
A F N+YVKN E + L+++F EFG S VM D +G S+ FGFVNF+ ++A
Sbjct: 170 ARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEA 229
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
++V ++NGK + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDD
Sbjct: 230 QKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDV 289
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
I D+KL++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPL
Sbjct: 290 IDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 348
Query: 393 YVALAQRKEERRARL------QFSQMRPPVGPRMP-----MYPPVAPGLGQQLFYGQG-- 439
YVALAQRKEER+A L + S +R GP P P + + FY
Sbjct: 349 YVALAQRKEERKAILTNQYMQRISVLRNINGPVFPQPTNYFLPAIPQSPTRASFYSPSTM 408
Query: 440 PPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP 499
PI P Y + + F+P P S ++QA +P P
Sbjct: 409 APIRPAPRWTSYSPRSLCAF--VVFLPAT--------PRRSTSNISTVRQASTQVPRAGP 458
Query: 500 RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM----QTGALA 555
M I G P G PG +P MP + + Q A
Sbjct: 459 HMQRVVNIGTQTMGTGCP-----GSPGQAIPQYKYSSAMPNAHQVMERAVHIQGQEPLTA 513
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S LA+A P++Q+ +LG+ LYPL+ + A K+TGMLLE+D +E+L +LESPE+L +K+
Sbjct: 514 SMLASAPPQEQKQMLGDRLYPLIYGVHAQLAGKITGMLLEIDNSELLLMLESPESLHSKI 573
Query: 616 AEAMEVLR 623
EA+ L+
Sbjct: 574 EEAVAALQ 581
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 143/262 (54%), Gaps = 26/262 (9%)
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-- 128
VC + +R G+G+V++ A +A+ +N LN + + + + ++ R++ G
Sbjct: 116 VCDENGSR---GFGFVHFETQEAANQAISTMNGMLLNDRKVFVGH-FKSRQEREAELGAR 171
Query: 129 -----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
NI++KN ++ +D++ L + FS FG LS KV D G SRG+GFV F+ E A+
Sbjct: 172 ALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQK 231
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN-------------NVYVKNLSETT 230
A++ +NG L + ++VG ++ ER+ K RF N+YVKNL +
Sbjct: 232 AVNSMNGKALGGRVLYVGRAQKRTERQGEL-KRRFEQMKQERVNRYQGVNLYVKNLDDVI 290
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
++ L+K F +G+ITS VM + G SK FGFV F P++A ++V +NG+ K Y
Sbjct: 291 DDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 349
Query: 291 VGKAQKKYEREMELKGKFEQSL 312
V AQ+K ER+ L ++ Q +
Sbjct: 350 VALAQRKEERKAILTNQYMQRI 371
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 23/210 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV + + V+D L +LF++ G+ +SV+V D S G+G+VN+ E
Sbjct: 170 ARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVD-ENGHSRGFGFVNFEKHEE 228
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++ +N L G+ + R + + + N+++KNLD
Sbjct: 229 AQKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDD 288
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG +++ K
Sbjct: 289 VIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKP 347
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ +S
Sbjct: 348 LYVALAQRKEER-----KAILTNQYMQRIS 372
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 179/358 (50%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEASKA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/361 (47%), Positives = 237/361 (65%), Gaps = 5/361 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDK+IDN+AL FS FGNILSCKV D
Sbjct: 81 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDD 140
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T ++ F N
Sbjct: 141 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATFTN 199
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ L K+F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 200 VFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 259
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K VG+AQKK ER EL+ +FE+ + ++ G+ +Y+KNLD++I+D+KLKE
Sbjct: 260 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKE 319
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA KA+ EMNG+++ SK L+V L Q +
Sbjct: 320 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQAR 378
Query: 401 E 401
Sbjct: 379 H 379
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 159/301 (52%), Gaps = 26/301 (8%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL +T L +F FG I S
Sbjct: 81 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCK 135
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 136 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 190
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T ++ N++VKN D I D+KL +LFSE+G S KV+RD G S+G GFV +
Sbjct: 191 -----TRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRY 245
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA-------RLQFSQMRPPVGPRMPM 422
T E A KA+ E++GK + K L V AQ+K ER A RL+ + P G +P+
Sbjct: 246 ETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSG--VPI 303
Query: 423 Y 423
Y
Sbjct: 304 Y 304
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 157/280 (56%), Gaps = 26/280 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD ++++ L+ LF+ G ++S +V C D ++ GY YV++++ A RA+
Sbjct: 106 NIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIW 162
Query: 100 ELNFTPLNGKPIRI-MYSY---RDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+N LN + + + + + R +R ++ N+F+KN ID++ L+ FS +G
Sbjct: 163 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATFTNVFVKNFGDDIDDEKLNKLFSEYG 222
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----------P 202
S KV D+ G+S+G+GFV+++ E+A+ A+ +L+G ++ K + VG
Sbjct: 223 PTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAE 282
Query: 203 FLRKQERESTADKTRFNNV--YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
R+ ER +K R + V Y+KNL ET ++ LK+ F FG I+ VM + G+ K
Sbjct: 283 LRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKG 341
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYV--GKAQKKY 298
FG V F ++A ++V+ +NG+ K +V G+A+ ++
Sbjct: 342 FGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQARHRW 381
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 186/456 (40%), Positives = 269/456 (58%), Gaps = 24/456 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V + L F+ V+SV +CR+ T +SL Y Y+N+++ A+ A+
Sbjct: 22 SLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAMAR 81
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRK-SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN T L GK +RIM+S RD + R+ +G GN+++KNLD SI + L F+ FG ILSCKV
Sbjct: 82 LNHTDLKGKAMRIMWSQRDLSYRRRTGFGNLYVKNLDISITSSGLERMFNPFGVILSCKV 141
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
++ GQS+G+GFVQF+ E+SA +A L+G +++ K++FV F+ K ER + A F
Sbjct: 142 VEEN-GQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVAKFINKNERVAMAGNKGFT 200
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL E TED L ++F ++G ++S VMRD G+S+ FGFVNF P++A ++V++L
Sbjct: 201 NVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSL 260
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+G++ K +VGKA K+ ER LK K+ + ++ NLYVKNL +S++D L+
Sbjct: 261 HGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSN-MRWSNLYVKNLSESMNDTTLR 319
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E+F +G I S KVMR NG S+G GFV FS EE+ +A +NG V K L V +A+R
Sbjct: 320 EIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVAER 379
Query: 400 KEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQP-GFGYQQQLVPG 458
KE+R RL Q PR P+ P Q P++ P +GY Q G
Sbjct: 380 KEDRLKRL---QQYFHAQPRHYTQAPLVPSPAQ--------PVLSYVPSSYGYLQPFHVG 428
Query: 459 MRPNYF---VPMVQPGQQ--NQRPGGRRSGTGPMQQ 489
Y +P + Q N P G+ GP+++
Sbjct: 429 ASYYYMGTQLPQMSGHQNITNDVPAGK----GPLKE 460
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 21/202 (10%)
Query: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVN 265
Q E+ + F ++YV +LS TE DL F + S + R++ GKS C+ ++N
Sbjct: 9 QALENHQHSSMFASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYIN 68
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQK--KYEREMELKGKFEQSLKETADKFEGLN 323
FD P A+ ++ LN K + +Q+ Y R N
Sbjct: 69 FDSPFSASNAMARLNHTDLKGKAMRIMWSQRDLSYRRRTGFG-----------------N 111
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
LYVKNLD SI+ L+ +F+ FG I SCKV+ + NG S+G GFV F T + A A + ++
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVV-EENGQSKGFGFVQFETEQSAVTARSALH 170
Query: 384 GKMVVSKPLYVALAQRKEERRA 405
G MV K L+VA K ER A
Sbjct: 171 GSMVDGKKLFVAKFINKNERVA 192
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 16/185 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +L ++ + L+ LF+Q G V SV V RD RS G+G+VN+ A +A+D
Sbjct: 200 TNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCHPENAKKAVD 258
Query: 100 ELN------FTPLNGKPIR-------IMYSYRDPTIRKSGA--GNIFIKNLDKSIDNKAL 144
L+ T GK ++ + + YRD I KS N+++KNL +S+++ L
Sbjct: 259 SLHGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTL 318
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
+ F +G I+S KV G+S+G+GFV F N E +K A LNG ++ K + V
Sbjct: 319 REIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVAE 378
Query: 205 RKQER 209
RK++R
Sbjct: 379 RKEDR 383
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 238/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK+IF E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRAPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+++ SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 377
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 153/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKE+FSE+G+ S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMLEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 238/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKELFSE+G S KV+RD G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSMDGKVLYVGRAQKKIERLA 282
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 231/356 (64%), Gaps = 6/356 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDLD V ++ L F +G + S+R+CR T +SL Y YVN + +A+RAL
Sbjct: 18 SLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALGL 77
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN T L GKP+RIM+ RDP RK+G N+F+KNLD SI + L FS +G ILSCKVA
Sbjct: 78 LNHTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVA 137
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
++ G+S+G+GFVQF++++SA A L+ +L K++ V F++K ER + A F N
Sbjct: 138 GEN-GRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPCEVFTN 196
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YVKNL ET TED LK +F G ++S A+M D +GKSK FGFVNF PDDA ++V+ +N
Sbjct: 197 LYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMN 256
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G K +VGKAQ+K ER M LK +++ + +K NLYVKNL+ I D KLKE
Sbjct: 257 GSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLKE 316
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+FS +G I S KV+ +G S+ GFV F++ EEA+KAL +NG PL+ ++
Sbjct: 317 VFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNG-----HPLFFSV 367
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 146/265 (55%), Gaps = 20/265 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ +L+V +LD S++ S L +F++ G ++S +V + RS G+G+V + +
Sbjct: 99 ARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVAGE--NGRSKGFGFVQFESQDS 156
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTF 148
A A L+ T L GK + + + T R + A N+++KNLD++I L D F
Sbjct: 157 ALVAQTALHDTMLGGKKLHVC-KFVKKTERTAAAPCEVFTNLYVKNLDETITEDGLKDMF 215
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S G++ S + D G+S+ +GFV F + + AK A+D +NG ++ K +FVG RK E
Sbjct: 216 SVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSE 275
Query: 209 R------------ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
R + +K R +N+YVKNL+ + LK++F +G I S V+ DG
Sbjct: 276 RTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDG 335
Query: 257 KSKCFGFVNFDDPDDAARSVEALNG 281
SK FGFV F P++A +++ ALNG
Sbjct: 336 TSKQFGFVCFASPEEANKALVALNG 360
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 18/282 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAID 186
++++ +LD + L F G I S ++ L G+S Y +V + A A+
Sbjct: 17 ASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALG 76
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN L K + + +R+ A KT F N++VKNL + + L+ IF ++G I
Sbjct: 77 LLNHTNLKGKPMRI----MWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTIL 132
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V + +G+SK FGFV F+ D A + AL+ K+ +V K KK ER
Sbjct: 133 SCKVAGE-NGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTER------ 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ + F NLYVKNLD++I++D LK++FS G ++S +M D G S+ GF
Sbjct: 186 ----TAAAPCEVFT--NLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGF 239
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
V F + ++A KA+ MNG ++ SK L+V AQRK ER L+
Sbjct: 240 VNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILK 281
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 174/361 (48%), Positives = 234/361 (64%), Gaps = 5/361 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDL V + LY F G + R+CRD T LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIK+LDKSIDN+ L FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNL + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A +SV L+
Sbjct: 201 VFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKTIDGKVLYVGRAQKKIERLAELRRRFERLKLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G V FS+ EEA+KA+ EMNG ++ SKPL V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEM-GQGKGFAVVCFSSFEEATKAVDEMNGPVLGSKPLSVTLGQAR 379
Query: 401 E 401
Sbjct: 380 H 380
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 163/307 (53%), Gaps = 19/307 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +L + L+ F G + ++ D + S GYG+V F A+ A++ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++K+L ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKNL D++ D+KLKELFSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPVA 427
T E A K++ +++GK + K LYV AQ+K ER A L +F +++ R P P
Sbjct: 247 ETHEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAELRRRFERLKLKEKSRPPGVPIYI 306
Query: 428 PGLGQQL 434
L + +
Sbjct: 307 KNLDETI 313
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 177/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 179/358 (50%), Positives = 237/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD T LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
LNGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLLNGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNL + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSIDGKILYVGRAQKKIERLAELRRRFERLRLKDKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSPFGSISRAKVMMEV-GQGKGFGVVCFSSFEEAAKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLN K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLLNGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKNL D + D+KLKELFSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKILYVGRAQKKIERLA 282
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/395 (44%), Positives = 248/395 (62%), Gaps = 7/395 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V + L D F+ VVSV +CR+ T +S+ Y Y+N+++ A+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRK---SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LN + L GK +RIM+S RD R+ +G N+++KNLD SI + L F FG+ILSC
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV ++ GQS+G+GFVQFD E+SA SA L+G ++ K++FV F+ K ER + A
Sbjct: 142 KVVEEN-GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQD 200
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
NVYVKNL ET T+D L +F ++G ++S VMRD G+S+ FGFVNF +P++A +++E
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+L G + K+ +VGKA KK ER LK KF + + NLYVKNL +S+++ +
Sbjct: 261 SLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPN-MRWSNLYVKNLSESMNETR 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E+F +G I S KVM NG S+G GFV FS EE+ +A +NG +V KP+ V +A
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 398 QRKEERRARL-QFSQMRPPVGPRMPMYP-PVAPGL 430
+RKE+R RL Q+ Q +P + P P P P L
Sbjct: 380 ERKEDRIKRLQQYFQAQPRQYTQAPSAPSPAQPVL 414
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 15/191 (7%)
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAAR 274
+RF ++YV +LS TE DL F + S + R++ GKS C+ ++NFD P A+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
++ LN K + +Q+ + F NLYVKNLD SI+
Sbjct: 78 AMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFA-------------NLYVKNLDSSIT 124
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
L+ +F FG+I SCKV+ + NG S+G GFV F T + A A + ++G MV K L+V
Sbjct: 125 SSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Query: 395 ALAQRKEERRA 405
A K+ER A
Sbjct: 184 AKFINKDERAA 194
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 22/189 (11%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
ST++YV +L +V D L+ LF+Q G V SV V RD RS G+G+VN+ A +A+
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Query: 99 DELNFTPLNGKPIRIMYSYR------------------DPTIRKSGAGNIFIKNLDKSID 140
+ L L K + + + + P +R S N+++KNL +S++
Sbjct: 260 ESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWS---NLYVKNLSESMN 316
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
L + F +G I+S KV G+S+G+GFV F N E +K A LNG L++ K + V
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVV 376
Query: 201 GPFLRKQER 209
RK++R
Sbjct: 377 RVAERKEDR 385
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 237/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD T LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN++L FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T DK F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVRTRDKATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNL + ++ LK +F E+G S ++RDA GKSK FGFV ++ D A ++V L+
Sbjct: 201 VFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I ++KLKE
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDEEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G + FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSAFGSISRAKVMMEV-GQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHVTLGQ 377
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T DK N++VKNL D + D+KLK LFSE+G S K++RD +G S+G GFV +
Sbjct: 192 -----TRDKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T + A KA+ +++GK V K LYV AQ+K ER A
Sbjct: 247 ETHDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 155/291 (53%), Positives = 207/291 (71%), Gaps = 5/291 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+++SLYVGDL V+DS L F+++G V+S RVCRDL+TR+SLGYGYVN+ A +
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQ 69
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ PL G+PIRIM+S RDP++RKSG GNIFIKNLDKSI+ K L+DTFS FG ILS
Sbjct: 70 ALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ D GQS+GYGFV F+ EE A+ AI+K+N M++ D+ V+VG F+ K ER+S A K
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKV 189
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNN+YVKN T + LK++F EFG I S VM+D +GKSK FGFV + DPD A +V
Sbjct: 190 KFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
++GK+ + + Y +AQ+K ER+ ELK K E+ E + LYV+
Sbjct: 250 RTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSR-----LYVQ 295
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 156/281 (55%), Gaps = 17/281 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L + + AL FS G +LS +V D + QS GYG+V F++ + A+ A++
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEV 73
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN L + + + +R+ + K+ N+++KNL ++ + +L F FG I S
Sbjct: 74 LNYEPLMGRPIRIMW----SQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
++ D +G+SK +GFV+F+ + A R++E +N D+ YVGK K ER
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTER------- 182
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
K A K + NLYVKN ++KLKE+FSEFG I S VM+D G S+G GFV
Sbjct: 183 -----KSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFV 237
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
+ + A A+ M+GK + + LY A AQRKEER+ L+
Sbjct: 238 CYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELK 278
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 177/358 (49%), Positives = 237/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T DK F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + +D LK++F E+G S V+RD+ GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G + FS+ EEA+KA+ EMNG++V SKPL V L Q
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T DK N++VKN D + DDKLKELFSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 238/360 (66%), Gaps = 9/360 (2%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + +D LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKTRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + + +G GF V FS+ EEA+KA+ EMNG++V SKPL V L Q
Sbjct: 321 EFSSFGSISRAKVMVE---VEQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + DDKLKELFSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 236/358 (65%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTKDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK+IF +G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK + K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ E+A+KA+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKE+FS +G S KV+RD +G S+G GFV +
Sbjct: 192 -----TKDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDK IDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK+IF +G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK + K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 150/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL + L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKE+FS +G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDK IDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK+IF +G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK + K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 150/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL + L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKE+FS +G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN ++ LK+IF +G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK + K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ E+A+KA+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN + + D+KLKE+FS +G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 233/346 (67%), Gaps = 5/346 (1%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF +NGKP R+M+
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D G S+GY +V F
Sbjct: 62 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHF 120
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNNVYVKNLSETTTE 232
D+ +A AI +NG+ LN++QV+VG F +ER + T D+ F NV+VKN+ + +
Sbjct: 121 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDD 180
Query: 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
+ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+GK D K YVG
Sbjct: 181 EKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 240
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE FS FG+I+ K
Sbjct: 241 RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAK 300
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
VM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 301 VMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 345
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 147/264 (55%), Gaps = 17/264 (6%)
Query: 144 LHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L+ F G + ++ D + +S GYG+V F A+ A++ +N L+N K P
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGK-----P 56
Query: 203 F-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
F L + + K+ N+++KNL ++ L +F FG I S V+ D +G SK +
Sbjct: 57 FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGY 115
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
+V+FD A R++ +NG + ++++ YVG+ + ER E++ T D+
Sbjct: 116 AYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATF 166
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV + T E A KA+ +
Sbjct: 167 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 226
Query: 382 MNGKMVVSKPLYVALAQRKEERRA 405
++GK + K LYV AQ+K ER A
Sbjct: 227 LHGKSIDGKVLYVGRAQKKIERLA 250
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 157/279 (56%), Gaps = 26/279 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD S+++ L+ LF+ G ++S + VC D ++ GY YV++++ A RA+
Sbjct: 75 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIW 131
Query: 100 ELNFTPLNGKPIRI-MYSY---RDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+N LN + + + + + R +R ++ N+F+KN+ ID++ L + F +G
Sbjct: 132 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 191
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--- 209
S KV D+ G+S+G+GFV+++ E+A+ A+ L+G ++ K ++VG +K ER
Sbjct: 192 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAE 251
Query: 210 -------ESTADKTRFNNV--YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
+K+R V Y+KNL ET ++ LK+ F FG I+ VM + G+ K
Sbjct: 252 LRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKG 310
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYV--GKAQKK 297
FG V F ++A ++V+ +NG+ K +V G+A+++
Sbjct: 311 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARRR 349
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 308 bits (790), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 169/380 (44%), Positives = 245/380 (64%), Gaps = 8/380 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVGDL V +++LY+ FN G V SVRVCRD+ T+ SLGYGYVN+ +A +
Sbjct: 28 SASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAAKV 87
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ NF L G+P+RIM+S RDPT R+SG GNIFIKNL +DNKAL+DTF FG +LSC
Sbjct: 88 YEAANFEELKGQPVRIMFSERDPTKRRSGVGNIFIKNLSAEVDNKALYDTFRVFGTVLSC 147
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
+V D G SRG FVQ+++ E AK I ++N + DK V V + +++R A++T+
Sbjct: 148 RVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKILDKVVKVEAYKPRRQRMLEAEETQ 207
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NV+ KN++ +++D+ K F FG I S V++ D + +GFV + D DA ++
Sbjct: 208 KNFTNVFFKNVAADISDEDIMKEFENFGEIESK-VLKSHDQFGR-YGFVAYKDTADAQKA 265
Query: 276 VEALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
V LN K D + YV +AQ+K ER L+ +FE+ E K++ NLY+KN + +
Sbjct: 266 VSELNDKPLGADGTKLYVARAQRKSERMGRLRREFERRRTEMRAKYKDANLYIKNFSEDV 325
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KPL 392
++D+L+++F +GTI S +V++D +G SR GFV FS+ EEA++A+ EMNG+M KPL
Sbjct: 326 TEDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRMTADGKPL 385
Query: 393 YVALAQRKEERRARLQFSQM 412
YV+ + KEER +Q +M
Sbjct: 386 YVSRFRNKEERAQEVQRQRM 405
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
+LG L+ LV + +A K+TGMLL+ VL LE+P ALKA + +A +VL V Q
Sbjct: 490 VLGNPLFSLVQAQQPKHAPKITGMLLDQPDEAVLEYLENPAALKAALDQAYKVL--VEQA 547
Query: 629 QATG 632
A G
Sbjct: 548 PAAG 551
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 232/355 (65%), Gaps = 8/355 (2%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYV 223
G S+GY +V FD+ +A AI +NG+ LN++QV+ +R T D+ F NV+V
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYRAAEVR------TRDRATFTNVFV 194
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KN + ++ LK IF E+G S V+RDA GKSK FGFV ++ + A ++V L+GK
Sbjct: 195 KNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKS 254
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE FS
Sbjct: 255 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPVYIKNLDETIDDEKLKEEFS 314
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FG+I+ KVM + G +G G V +S+ EEA+KA+ EMNG+++ SKPL+V L Q
Sbjct: 315 SFGSISRAKVMVEV-GQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 368
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 147/276 (53%), Gaps = 26/276 (9%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ Y R E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY---------RAAEVR---- 182
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLK++FSE+G S KV+RD +G S+G GFV +
Sbjct: 183 -----TRDRATFTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRY 237
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 238 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 273
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 163/366 (44%), Positives = 230/366 (62%), Gaps = 33/366 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +A +ALD
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF +NGK IR+M+S RD +R+SG GN V
Sbjct: 71 MNFDVVNGKSIRLMWSQRDAYLRRSGIGN-----------------------------VM 101
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT--RF 218
+D G S+GY FV F N+ +A AI+++NG L D +VFVG F +++RE+ F
Sbjct: 102 SDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAELRNKAGEF 160
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++F ++G S VM D+ GKSK FGFV+FD+ + A ++V+
Sbjct: 161 TNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDNHEAAKKAVKE 220
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK + + +VG+AQKK ER+ ELK FEQ KE +G+ LY+KNLDD+I D+KL
Sbjct: 221 MNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIKNLDDTIDDEKL 280
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+I+ KVM++ G S+G G + FS+ EEA+KA+TEMNG ++ SKPL +ALA
Sbjct: 281 RKEFSSFGSISRVKVMQE-GGQSKGFGLICFSSLEEATKAMTEMNGHILGSKPLSIALAH 339
Query: 399 RKEERR 404
R R
Sbjct: 340 RHYXER 345
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 150/290 (51%), Gaps = 47/290 (16%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++N K + L +R++ ++ NV
Sbjct: 71 MNFDVVNGKSIR----LMWSQRDAYLRRSGIGNV-------------------------- 100
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
M D G SK + FV+F + A R++E +NG++ D + +VG+ + + +RE EL+ K
Sbjct: 101 ---MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAELRNK 156
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + + D+KLKE+FS++G S KVM D +G S+G GFV
Sbjct: 157 --------AGEFT--NVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFV 206
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPP 415
+F E A KA+ EMNGK + + ++V AQ+K ER+A L+ F Q++
Sbjct: 207 SFDNHEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKE 256
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
LY+ +LD +++D +L F+ G + V+V ++ +S G+G + +++ EAT+A+
Sbjct: 264 VKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEGG--QSKGFGLICFSSLEEATKAMT 321
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRK 124
E+N L KP+ I ++R RK
Sbjct: 322 EMNGHILGSKPLSIALAHRHYXERK 346
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 172/399 (43%), Positives = 251/399 (62%), Gaps = 25/399 (6%)
Query: 40 TSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TS++VGDL DL + + +LF+ + VVSV+VCRD++T+RSLGYGYVN+ +A +
Sbjct: 8 TSVFVGDLPVDLPRPEEAINNLFSSIAPVVSVKVCRDIATQRSLGYGYVNFQTTADAEKV 67
Query: 98 LDELNFTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+D LNFT + G+ IR+M++ RDP RKSGA NIF+K LD ++ KAL FS G +LS
Sbjct: 68 IDALNFTGIAPGRYIRVMFAIRDPLQRKSGANNIFVKKLDAAVSAKALQAAFSRCGRVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G S+GYGFVQF+ + AK+A+D +NG + D +V V PF+R+ +RE+ A K+
Sbjct: 128 CKVALDSEGHSKGYGFVQFETADGAKAALD-MNGAKVGDSEVEVAPFVRRVDREAMAAKS 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN+ T TE D++ +FG +TS + A +K F F++ + A +++
Sbjct: 187 -FRNIYIKNIKATATEVDMRTTLEKFGKVTSLFLAEHAPFLTK-FALAVFEEHEAAVKAI 244
Query: 277 EALN-----GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE--GLNLYVKNL 329
LN G + + V +A K ER+ E K+TA ++ G NLYVK+L
Sbjct: 245 AELNESEESGLTEEAVKLVVCRALSKSERDRE--------RKKTASLYQNHGRNLYVKHL 296
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D I+DDKL+E+F+ FG ITSC +MR+ NG RG FV F + A+ A+ E+NG+ + S
Sbjct: 297 PDDITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAMRELNGRSLES 356
Query: 390 --KPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPV 426
KPLYV+ A++K+ R LQ Q R + + M PP+
Sbjct: 357 SKKPLYVSQAEQKDMRIRLLQ--QRRAAMRHQTRMAPPM 393
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
Q G + L SPEQQ+ LGE LY + +E NAAK+TGMLLEM + E+ +L
Sbjct: 474 QDGIDVNYLNTLSPEQQKNYLGELLYSRIMPVESFNAAKITGMLLEMSREEIFEVLRDHF 533
Query: 610 ALKAKVAEAMEVLRNVAQQQATG 632
AL AK+ EA VL QQ +G
Sbjct: 534 ALLAKIQEANAVL-----QQHSG 551
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 171/397 (43%), Positives = 245/397 (61%), Gaps = 21/397 (5%)
Query: 40 TSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TS+YVGDL DL + + +LF+ + VVSV+VCRD++T+RSLGYGYVN+ +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 98 LDELNFTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+D LN+T + G+ IR+M+S RDP RKSG N+F+K LD +I+ K L F+ G +LS
Sbjct: 68 IDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G S+GYGFVQF+ E AK+A+D +NG L D +V V PF+R+ +RE A K+
Sbjct: 128 CKVALDSAGNSKGYGFVQFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKS 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN++ TE D+K +FG + S + A +K F V F++ + A +++
Sbjct: 187 -FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVQAI 244
Query: 277 EALN-----GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
ALN G + V +A K ER+ E K SL + G NLYVK+L D
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDREKKKA--ASLYQN----HGRNLYVKHLPD 298
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VS 389
I+DD+L+E+F FG ITSC +M++PNG +G FV F + AS AL +NG+ +
Sbjct: 299 DITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQPLEHSK 358
Query: 390 KPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPV 426
KPLYV+ A++K+ R LQ Q R + + M PP+
Sbjct: 359 KPLYVSHAEQKDMRIRLLQ--QRRAAMRHQSRMVPPM 393
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 547 QPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
Q Q G + L+ SPEQQ+ LGE LY + LE NAAK+TGMLLEM + E+ +L
Sbjct: 463 QQRQDGVDMNYLSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILA 522
Query: 607 SPEALKAKVAEAMEVLRNVAQQQATG 632
AL +K+ EA VL QQ TG
Sbjct: 523 DHFALLSKIQEANAVL-----QQHTG 543
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL V ++ LY++FN +G V+S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSG GNIF+KNLDK+IDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NGM L K V+VG F++K ER + + T
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN +T TE LK++F +G ITS V +D K++ F F+N+ D D A ++
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 277 EALNGKKFDD 286
E LNGKK +
Sbjct: 249 ENLNGKKITE 258
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 126/402 (31%), Positives = 215/402 (53%), Gaps = 35/402 (8%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + +++V +LD ++++ L+D F+ G ++S +V D +S YG+V+Y A
Sbjct: 99 RKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESA 157
Query: 95 TRALDELNFTPLNGKPIRIMYSYR--DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
A++++N L K + + + + + + N+++KN ++ L FS +G
Sbjct: 158 KEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYG 217
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQERES 211
I S V +D+ ++R + F+ + + +SA++A++ LNG + D ++ +K+E E
Sbjct: 218 EITSMIVKSDN--KNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEESEK 275
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA---DGKSKCFGFVNF-- 266
A++ NN + TT+E +K + + +A +DA + ++ G
Sbjct: 276 AANENYNNNNTTSEENATTSETPAEKKTTD----SESATNKDATPGEDQTSANGTTTTVT 331
Query: 267 --------DDPDD--AARSVEALNGKKFDDKE----------WYVGKAQKKYEREMELKG 306
+ P+D A + A +K D K+ YVG Q + R LK
Sbjct: 332 STTDAKTEETPNDNTANAGINASITEKKDKKKSGESTETPNILYVGPHQSRARRHAILKA 391
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
KF+ E+ +K G+NLY+KNLDDS++D LKELF +GTITS KVM+D S+G GF
Sbjct: 392 KFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGF 451
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
V F T EEA+KA+TEM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 452 VCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREHRLSRLQ 493
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 198 VFVGPFLRKQERESTADKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGI 244
++VGP + R + K +F+ N+Y+KNL ++ + LK++F +G
Sbjct: 374 LYVGPHQSRARRHAIL-KAKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGT 432
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS VM+D +SK FGFV F ++A ++V ++ K + K YVG A+K+ R L
Sbjct: 433 ITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREHRLSRL 492
Query: 305 KGKF 308
+ +F
Sbjct: 493 QQRF 496
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625
Q+ +LGENL+PLV A K+TGM+LEMD +E+L LLE+ + LK K+ EA+ VL+N
Sbjct: 773 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEALVVLQNA 832
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 141/250 (56%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL+ V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSGAGNIF+KNLDKSIDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NG+ L K V+VG F++K ER + + T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN ++ TE LK++F FG ITS V D K++ F F+N+ D + A ++
Sbjct: 191 KFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIV--KTDNKNRKFCFINYADSESAKNAM 248
Query: 277 EALNGKKFDD 286
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 120/217 (55%), Gaps = 22/217 (10%)
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG--KKFDDKE-------WYVGKAQKK 297
+T+ A+GK G D +AA EA G KK E YVG Q +
Sbjct: 369 ATSTDAAANGKEDAAG----SDATNAAAQGEATTGSSKKESGSENADSPNILYVGPHQSR 424
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
R LK KF+ E+ +K +G+NLY+KNLDD+I D LKELF +GTITS KVMRD
Sbjct: 425 ARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDD 484
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVG 417
S+G GFV F+ EEA++A+TEM+ K++ KPLYV LA+++E+R +RLQ P+
Sbjct: 485 KEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRMHPIR 544
Query: 418 PRM------PM-YP-PVAPGLG-QQLFYGQGPPIIPP 445
M PM YP P +P L Q G P+I P
Sbjct: 545 HHMNNALNSPMQYPNPQSPQLQFNQNTLNYGRPVITP 581
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 144/278 (51%), Gaps = 28/278 (10%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKL 188
+++ +L++ + L++ F+T G++ S +V DS+ +S GY +V + N A+ A+D L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N + + L R+ + K+ N++VKNL ++ L F FG I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V D GKSK +GFV+++D + A ++E +NG + K YVG KK ER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSER-------- 185
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
+ +T KF NLYVKN DS+++ LK+LFS FG ITS V D +R F+
Sbjct: 186 --ATNDT--KF--TNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKTD--NKNRKFCFIN 237
Query: 369 FSTAEEASKALTEMNGKMVVS----KPLYVALAQRKEE 402
++ +E A A+ +NGK + P Y A +KEE
Sbjct: 238 YADSESAKNAMENLNGKKITDDGQIDPTYDA---KKEE 272
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L+E TE L +IF G ++S V RD+ KS + +VN+ + DA R+++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + + + + SL+++ N++VKNLD SI + L
Sbjct: 78 NYTNIKGQPARLMWSHR------------DPSLRKSG----AGNIFVKNLDKSIDNKALF 121
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS FG I SCKV D G S+ GFV + E A +A+ ++NG + SK +YV +
Sbjct: 122 DTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIK 181
Query: 400 KEER 403
K ER
Sbjct: 182 KSER 185
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 12/123 (9%)
Query: 198 VFVGPFLRKQERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++VGP + R + + +K + N+Y+KNL + + LK++F +G I
Sbjct: 416 LYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTI 475
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
TS VMRD +SK FGFV F ++A R+V ++ K + K YVG A+K+ +R L+
Sbjct: 476 TSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 535
Query: 306 GKF 308
+F
Sbjct: 536 QRF 538
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L + F +G I S KV D QS+G+GFV F +E A A+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEM 509
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
+ ++N K ++VG ++++R S
Sbjct: 510 HLKIINGKPLYVGLAEKREQRLS 532
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+ +LD +++D L +LF G + S +V RD +S G+G+V + EA RA+ E
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQSKGFGFVCFALQEEANRAVTE 508
Query: 101 LNFTPLNGKPIRI 113
++ +NGKP+ +
Sbjct: 509 MHLKIINGKPLYV 521
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
Q+ +LGENL+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 823 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 880
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 200/284 (70%), Gaps = 10/284 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL V ++ LY++FN +G V+S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSG GNIF+KNLDK+IDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NGM L K V+VG F++K ER + + T
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN +T TE LK++F +G ITS V +D K++ F F+N+ D D A ++
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 277 EALNGKKFDDKEWYVGKAQKKYE--REMELKGKFEQSLKETADK 318
E LNGKK + GK Y+ +E K E S T+++
Sbjct: 249 ENLNGKKITED----GKIDHNYDPKKEEAEKAANENSNNTTSEE 288
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 130/406 (32%), Positives = 214/406 (52%), Gaps = 38/406 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD ++++ L+D F+ G ++S +V D +S YG+V+Y A A+++
Sbjct: 105 NIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESAKEAIEK 163
Query: 101 LNFTPLNGKPIRIMYSYR--DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+N L K + + + + + + N+++KN ++ L + FS +G I S
Sbjct: 164 VNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMI 223
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQERESTADKTR 217
V +D+ ++R + F+ + + +SA++A++ LNG + D ++ +K+E E A++
Sbjct: 224 VKSDN--KNRKFCFINYSDADSARNAMENLNGKKITEDGKIDHNYDPKKEEAEKAANENS 281
Query: 218 FNNVYVKN--LSETTTEDDLKKIFGEFGIITSTAVMRDA---DGKSKCFGFVNFDDPDDA 272
N +N SET E KK E +A +DA + ++ G
Sbjct: 282 NNTTSEENAATSETPAE---KKTDSE------SATNKDATTGEDQTSANGTTTTVTSTTD 332
Query: 273 ARSVEALN--------GKKFDDKE----------WYVGKAQKKYEREMELKGKFEQSLKE 314
A++ EA N +K D K+ YVG Q + R LK KF+ E
Sbjct: 333 AKTEEATNDSTANAATAEKKDSKKSGESTETPNILYVGPHQSRARRHALLKAKFDTLNTE 392
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374
+ +K G+NLY+KNLDDS+ D LKELF +GTITS KVM+D S+G GFV F T EE
Sbjct: 393 SRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEE 452
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRM 420
A+KA+TEM+ K++ KPLYV LA+++E+R +RLQ P+ M
Sbjct: 453 ANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRMHPIRHHM 498
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 48/307 (15%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+LYV + +V ++ L +LF+ G++ S+ V D R+ + ++NY+ A A A++
Sbjct: 193 TNLYVKNFPDTVTEAHLKELFSPYGEITSMIVKSDNKNRK---FCFINYSDADSARNAME 249
Query: 100 ELNFTPLNGKPI----RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT---FSTFG 152
LN GK I +I ++Y DP ++ N S +N A +T T
Sbjct: 250 NLN-----GKKITEDGKIDHNY-DPKKEEAEKAANENSNNTTSEENAATSETPAEKKTDS 303
Query: 153 NILSCKVATDSLGQSRGYGFV------------QFDNEESAKSAI-----DKLNGMLLND 195
+ K AT Q+ G + N+ +A +A K +G
Sbjct: 304 ESATNKDATTGEDQTSANGTTTTVTSTTDAKTEEATNDSTANAATAEKKDSKKSGESTET 363
Query: 196 KQV-FVGPFLRKQERESTADKTRFN-------------NVYVKNLSETTTEDDLKKIFGE 241
+ +VGP + R + K +F+ N+Y+KNL ++ + LK++F
Sbjct: 364 PNILYVGPHQSRARRHALL-KAKFDTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEP 422
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
+G ITS VM+D +SK FGFV F ++A ++V ++ K + K YVG A+K+ +R
Sbjct: 423 YGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRL 482
Query: 302 MELKGKF 308
L+ +F
Sbjct: 483 SRLQQRF 489
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 172/397 (43%), Positives = 244/397 (61%), Gaps = 21/397 (5%)
Query: 40 TSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TS+YVGDL DL + + +LF+ + VVSV+VCRD++T+RSLGYGYVN+ +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 98 LDELNFTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+D LN+T + G IR+M+S RDP RKSG N+F+K LD +I+ K L F+ G +LS
Sbjct: 68 IDALNYTGIAPGLQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G S+GYGFVQF+ E AK+A+D +NG L D +V V PF+R+ +RE A K+
Sbjct: 128 CKVALDSAGNSKGYGFVQFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKS 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN++ TE D+K +FG + S + A +K F V F++ + A +++
Sbjct: 187 -FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVQAI 244
Query: 277 EALN-----GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
ALN G + V +A K ER+ E K SL + G NLYVK+L D
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDREKKKA--ASLYQN----HGRNLYVKHLPD 298
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VS 389
I+DDKL+E+F FG ITSC +M++PNG +G FV F + AS AL +NG+ +
Sbjct: 299 DITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQPLEHSK 358
Query: 390 KPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPV 426
KPLYV+ A++K+ R LQ Q R + + M PP+
Sbjct: 359 KPLYVSHAEQKDMRIRLLQ--QRRAAMRHQSRMVPPM 393
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 547 QPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
Q Q G + L+ SPEQQ+ LGE LY + LE NAAK+TGMLLEM + E+ +L
Sbjct: 463 QQRQDGVDMNYLSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILA 522
Query: 607 SPEALKAKVAEAMEVLRNVAQQQATG 632
AL +K+ EA VL QQ TG
Sbjct: 523 DHFALLSKIQEANAVL-----QQHTG 543
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL V ++ LY++FN +G V+S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSG GNIF+KNLDK+IDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NGM L K V+VG F++K ER + + T
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN +T TE LK++F +G ITS V +D K++ F F+N+ D D A ++
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 277 EALNGKKFDD 286
E LNGKK +
Sbjct: 249 ENLNGKKITE 258
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 210/410 (51%), Gaps = 48/410 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + +++V +LD ++++ L+D F+ G ++S +V D +S YG+V+Y A
Sbjct: 99 RKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESA 157
Query: 95 TRALDELNFTPLNGKPIRIMYSYR--DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
A++++N L K + + + + + + N+++KN ++ L FS +G
Sbjct: 158 KEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYG 217
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQERES 211
I S V +D+ ++R + F+ + + +SA++A++ LNG + D ++ +K+E E
Sbjct: 218 EITSMIVKSDN--KNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEETEK 275
Query: 212 TA---------------------DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
A +K ++ N T ED G T+
Sbjct: 276 PANENSNNNTTTEENTTTSETPAEKKTPDSEPATNKDATPGEDQT----SANGTTTTVTS 331
Query: 251 MRDADGKSKCFGFVNFDDPDD--AARSVEALNGKKFDDKE----------WYVGKAQKKY 298
DA+ SK + P+D A A +K D+K+ YVG Q +
Sbjct: 332 TTDANPDSKTE-----ETPNDNTANAGTNASTTEKKDNKKSGENTETPNILYVGPHQSRA 386
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
R LK KF+ E+ +K G+NLY+KNLDDS++D LKELF +GTITS KVM+D
Sbjct: 387 RRHAILKAKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDK 446
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
S+G GFV F T EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ
Sbjct: 447 DQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 496
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 14/124 (11%)
Query: 198 VFVGPFLRKQERESTADKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGI 244
++VGP + R + K +F+ N+Y+KNL ++ + LK++F +G
Sbjct: 377 LYVGPHQSRARRHAIL-KAKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGT 435
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS VM+D +SK FGFV F ++A ++V ++ K + K YVG A+K+ +R L
Sbjct: 436 ITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRL 495
Query: 305 KGKF 308
+ +F
Sbjct: 496 QQRF 499
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
Q+ +LGENL+PLV A K+TGM+LEMD +E+L LLE+ + LK K+ EA+
Sbjct: 781 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEAL 834
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 165/379 (43%), Positives = 238/379 (62%), Gaps = 19/379 (5%)
Query: 40 TSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TS+YVGDL DL + + +LF+ + VVSV+VCRD++T+RSLGYGYVN+ +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 98 LDELNFTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+D LN+T + G+ IR+M+S RDP RKSG N+F+K LD +I+ K L FS G +LS
Sbjct: 68 IDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFSKCGRVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G S+GYGFVQF+ + K+A++ +NG L D +V V PF+R+ +RE+ A K+
Sbjct: 128 CKVALDSAGNSKGYGFVQFETADGTKAALE-MNGSKLGDSEVVVAPFVRRVDREAMAAKS 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN++ + TE D+K I EFG + S + A +K F V F++ A +++
Sbjct: 187 -FRNIYIKNITASATEADVKAIVEEFGKVDSLFLSEHARFPTK-FALVAFEEHQAAVQAI 244
Query: 277 EALN-----GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
ALN G + V +A K ER+ E K SL + G NLY+K+L D
Sbjct: 245 AALNESEESGLTEKAVKLVVCRALSKSERDREKKKA--ASLYQN----HGRNLYIKHLPD 298
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VS 389
I+DD+L+E+F FG ITSC +M++PNG +G FV F + AS AL +NG + +
Sbjct: 299 DITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFVCFEDKQHASAALRSLNGHPLEHSA 358
Query: 390 KPLYVALAQRKEERRARLQ 408
KPLYV+ A++K+ R LQ
Sbjct: 359 KPLYVSHAEQKDMRIRLLQ 377
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 547 QPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
Q Q G + L+ SPEQQ+ LGE LY + LE NAAK+TGMLLEM + E+ +L
Sbjct: 463 QQRQDGVDMNYLSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILA 522
Query: 607 SPEALKAKVAEAMEVLRNVAQQQATG 632
AL +K+ EA VL QQ TG
Sbjct: 523 DHFALLSKIQEANAVL-----QQHTG 543
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/278 (51%), Positives = 191/278 (68%), Gaps = 7/278 (2%)
Query: 20 PATNGIANNGGVGDARQ-----FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
P ++ ANN V S SLYVG+L+ SV ++ L++LF+ +G V S+RVCRD
Sbjct: 28 PTSDSDANNSSVAAPHSAPHNSHTSASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRD 87
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
TRRSLGY YVNYN + RAL+ELN+T + G+P RIM+S RDP +RK+G GN+FIKN
Sbjct: 88 AVTRRSLGYSYVNYNNTADGERALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKN 147
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD +IDNKALHDTF+ FGNILSCKVA D SRGYGFV ++ E+A +AI +NGMLLN
Sbjct: 148 LDTAIDNKALHDTFAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLN 207
Query: 195 DKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+K+VFVG + K++R+S D K F NVYVKN+ T+++ + +F +G ITS ++ R
Sbjct: 208 EKKVFVGHHIPKKDRQSKFDEMKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSR 267
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
D DG S+ FGFVNF + AA++VE L+ + + Y
Sbjct: 268 DQDGVSRGFGFVNFQEHQHAAKAVEELHESELKGQTLY 305
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 143/271 (52%), Gaps = 21/271 (7%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ L+ S+ L + FST GN+ S +V D++ + S GY +V ++N + A+
Sbjct: 52 SASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERAL 111
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 112 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 167
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S V +D S+ +GFV+++ + A +++ +NG ++K+ +VG K +R+
Sbjct: 168 LSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFD 227
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
E+K F N+YVKN+D ++D++ + +F +G ITS + RD +G+SR
Sbjct: 228 EMKANF-------------TNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSR 274
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
G GFV F + A+KA+ E++ + + LY
Sbjct: 275 GFGFVNFQEHQHAAKAVEELHESELKGQTLY 305
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 104/195 (53%), Gaps = 19/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV L + TE L ++F G + S V RDA +S + +VN+++ D R++E
Sbjct: 54 SLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERALEE 113
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + +L++T N+++KNLD +I + L
Sbjct: 114 LNYTLIKGRPCRIMWSQR------------DPALRKTGQG----NVFIKNLDTAIDNKAL 157
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ F+ FG I SCKV +D SRG GFV + TAE A+ A+ +NG ++ K ++V
Sbjct: 158 HDTFAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 217
Query: 399 RKEERRARLQFSQMR 413
K++R+++ F +M+
Sbjct: 218 PKKDRQSK--FDEMK 230
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL+ V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSGAGNIF+KNLDKSIDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NG+ L K V+VG F++K ER + + T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN ++ TE LK++F +G ITS V D K++ F F+N+ D + A ++
Sbjct: 191 KFTNLYVKNFPDSVTETHLKELFSPYGEITSMIV--KTDNKNRKFCFINYADSESAKNAM 248
Query: 277 EALNGKKFDD 286
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 102/165 (61%), Gaps = 9/165 (5%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YVG Q + R LK KF+ E+ +K +G+NLY+KNLDD+I D LKELF +GTIT
Sbjct: 417 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 476
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQF 409
S KVMRD S+G GFV F+ EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ
Sbjct: 477 SAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 536
Query: 410 SQMRPPVGPRM------PM-YP-PVAPGLG-QQLFYGQGPPIIPP 445
P+ M PM YP P +P L Q G P++ P
Sbjct: 537 RFRMHPIRHHMNNALNSPMQYPNPQSPQLQFNQNTLNYGRPVLTP 581
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 23/261 (8%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKL 188
+++ +L++ + L++ F+T G++ S +V DS+ +S GY +V + N A+ A+D L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N + + L R+ + K+ N++VKNL ++ L F FG I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V D GKSK +GFV+++D + A ++E +NG + K YVG KK ER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERA------- 186
Query: 309 EQSLKETAD-KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T D KF NLYVKN DS+++ LKELFS +G ITS V D +R F+
Sbjct: 187 ------TNDTKF--TNLYVKNFPDSVTETHLKELFSPYGEITSMIVKTD--NKNRKFCFI 236
Query: 368 AFSTAEEASKALTEMNGKMVV 388
++ +E A A+ +NGK +
Sbjct: 237 NYADSESAKNAMENLNGKKIT 257
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L+E TE L +IF G ++S V RD+ KS + +VN+ + DA R+++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + + + + SL+++ N++VKNLD SI + L
Sbjct: 78 NYTNIKGQPARLMWSHR------------DPSLRKSG----AGNIFVKNLDKSIDNKALF 121
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS FG I SCKV D G S+ GFV + E A +A+ ++NG + SK +YV +
Sbjct: 122 DTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIK 181
Query: 400 KEER 403
K ER
Sbjct: 182 KSER 185
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 12/123 (9%)
Query: 198 VFVGPFLRKQERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++VGP + R + + +K + N+Y+KNL + + LK++F +G I
Sbjct: 416 LYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTI 475
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
TS VMRD +SK FGFV F ++A ++V ++ K + K YVG A+K+ +R L+
Sbjct: 476 TSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 535
Query: 306 GKF 308
+F
Sbjct: 536 QRF 538
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L + F +G I S KV D QS+G+GFV F +E A A+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEM 509
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
+ ++N K ++VG ++++R S
Sbjct: 510 HLKIINGKPLYVGLAEKREQRLS 532
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+ +LD +++D L +LF G + S +V RD +S G+G+V + EA +A+ E
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQSKGFGFVCFALQEEANKAVTE 508
Query: 101 LNFTPLNGKPIRI 113
++ +NGKP+ +
Sbjct: 509 MHLKIINGKPLYV 521
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
Q+ +LGENL+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 824 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 881
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/247 (57%), Positives = 188/247 (76%), Gaps = 3/247 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL L V ++ LY+ F+Q G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ P+ G+PIRIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV+
Sbjct: 73 MNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVS 132
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR-F 218
+ G S+GYGFV F+ EE+ AI+K+NGMLLNDK+VFVG FL + ER + ++ R F
Sbjct: 133 CNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIKKMGERVRQF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + E L+ +F ++G++ S AVMRD DG S+ FGFV +D ++A +VEA
Sbjct: 192 TNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEA 251
Query: 279 LNGKKFD 285
+NG++ +
Sbjct: 252 MNGQEIE 258
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 137/260 (52%), Gaps = 16/260 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + + + + +R+ + K+ N+++KNL ++ L F FG I S
Sbjct: 73 MNYDPIKGRPIRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V + +G SK +GFV+F+ + R++E +NG +DK+ +VGK + ER ++ +
Sbjct: 129 CKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIKKMGER 187
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
Q N+Y+KN D + L+ +F ++G + S VMRD +G SRG GFV
Sbjct: 188 VRQFT----------NVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFV 237
Query: 368 AFSTAEEASKALTEMNGKMV 387
A+ + EEA A+ MNG+ +
Sbjct: 238 AYDSHEEAQAAVEAMNGQEI 257
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 18/189 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F + G + S V RD +S + +VNF P DA R+++
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 73 MNYDPIKGRPIRIMWSQR------------DPSLRKSGVG----NIFIKNLDKSIDNKAL 116
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV + NG S+G GFV F T E +A+ ++NG ++ K ++V
Sbjct: 117 YDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFL 175
Query: 399 RKEERRARL 407
+ ER ++
Sbjct: 176 TRSERIKKM 184
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 147/283 (51%), Positives = 198/283 (69%), Gaps = 5/283 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL+ V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSG GNIF+KNLDKSIDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NG+ L K V+VGPF++K ER + + T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN ++ TE L+++F +G ITS V D K++ F F+N+ D + A ++
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIV--KMDNKNRKFCFINYADAESAKNAM 248
Query: 277 EALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
+ LNGKK DD + KK E G Q+ ADK
Sbjct: 249 DNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADK 291
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 97/163 (59%), Gaps = 9/163 (5%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YVG Q + R LK KF+ E +K +G+NLY+KNLDD I D L+ELF FGTIT
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ- 408
S KVMRD S+G GFV F++ EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ
Sbjct: 478 SAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 537
Query: 409 -------FSQMRPPVGPRMPMYPPVAPGLG-QQLFYGQGPPII 443
M P+ M P +P L Q G P+I
Sbjct: 538 RFRMHPIRHHMNNPLNTPMQYASPQSPQLQFSQNTLSYGRPVI 580
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 134/260 (51%), Gaps = 21/260 (8%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKL 188
+++ +L++ + L++ F+T G++ S +V DS+ +S GY +V + N A+ A+D L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N + + L R+ + K+ N++VKNL ++ L F FG I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V D GKSK +GFV+++D + A ++E +NG + K YVG KK ER KF
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATN-DTKF 192
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
NLYVKN DS+++ L++LF+ +G ITS V D +R F+
Sbjct: 193 -------------TNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMD--NKNRKFCFIN 237
Query: 369 FSTAEEASKALTEMNGKMVV 388
++ AE A A+ +NGK +
Sbjct: 238 YADAESAKNAMDNLNGKKIT 257
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 19/185 (10%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L+E TE L +IF G ++S V RD+ KS + +VN+ + DA R+++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDKL 338
N Y + S ++ + + G N++VKNLD SI + L
Sbjct: 78 N-----------------YTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKAL 120
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV D G S+ GFV + E A +A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 399 RKEER 403
+K ER
Sbjct: 181 KKSER 185
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 198 VFVGPFLRKQERESTADKTRFNNV-------------YVKNLSETTTEDDLKKIFGEFGI 244
++VGP + R + K +F+N+ Y+KNL + + L+++F FG
Sbjct: 417 LYVGPHQSRARRHAIL-KAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT 475
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS VMRD +SK FGFV F ++A ++V ++ K + K YVG A+K+ +R L
Sbjct: 476 ITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRL 535
Query: 305 KGKF 308
+ +F
Sbjct: 536 QQRF 539
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD ID+ L + F FG I S KV D QS+G+GFV F ++E A A+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
+ ++N K ++VG ++++R S
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLS 533
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
+N V + + +LY+ +LD ++D L +LF G + S +V RD +S G+G+V
Sbjct: 437 DNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFV 495
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRI 113
+ + EA +A+ E++ +NGKP+ +
Sbjct: 496 CFASQEEANKAVTEMHLKIINGKPLYV 522
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
Q+ +LGENL+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 815 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 872
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 146/301 (48%), Positives = 198/301 (65%), Gaps = 30/301 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT---- 216
D G S+GYGFV F+ EE+A +IDK+NGMLLN K+V+VG F+ ++ERE +
Sbjct: 132 QDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 191
Query: 217 --------------------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
R N N+YVKNL +T ++ L+K F FG ITS VM
Sbjct: 192 TNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVM 251
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
+ +G+SK FGFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q
Sbjct: 252 ME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQR 310
Query: 312 L 312
+
Sbjct: 311 M 311
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 194/556 (34%), Positives = 282/556 (50%), Gaps = 67/556 (12%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE----- 301
S V +D G SK +GFV+F+ + A +S++ +NG + K+ YVGK + ERE
Sbjct: 127 SCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGE 186
Query: 302 ------------MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
ELK KFEQ E ++++G+NLYVKNLDD+I D++L++ F+ FGTIT
Sbjct: 187 KAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTIT 246
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQF 409
S KVM + G S+G GFV FS EEA+KA+TEMNG++V SKPLYVALAQRKE+R+A L
Sbjct: 247 SAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLAS 305
Query: 410 SQMRPPVGPRMP----MYPP------VAPGLGQ-QLFYG-------QGPPIIPPQP---- 447
M+ RM ++ P P L Q Q FYG + P P QP
Sbjct: 306 QYMQRMANVRMQQMGQIFQPGNAGSYFVPTLPQPQRFYGPAQMAQIRATPRWPAQPNQVR 365
Query: 448 --------GFGYQQQLVPGMRPNYFVPMVQPGQQNQRP--GGRRSGTGPMQQAQQPIPLM 497
GF Q R + RP G + G MQ P +
Sbjct: 366 PNAQTGSSGFAMQAPFRAAPRAPAAQAGAMRNTLSARPITGQQAVGGANMQSRSMAGPAV 425
Query: 498 QPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASA 557
+ P+ R Y N+ + P +P P P + A Q Q AS
Sbjct: 426 G--VSPQSRPSNYKYTANMRNPPQT------MPMP---AQAPVQQAVHIQG-QEPLTASM 473
Query: 558 LANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 617
LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE E+LKAKV E
Sbjct: 474 LAAAPPQEQKQMLGERLFPLIQCMYPALTGKITGMLLEIDNSELLHMLEHSESLKAKVEE 533
Query: 618 AMEVLRNVAQQQATGP 633
A+ VL+ +QA P
Sbjct: 534 AVAVLQAHQAKQANQP 549
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 139/250 (55%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL+ V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSGAGNIF+KNLDKSIDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NG+ L K V+VG F+++ ER + + T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN ++ TE LK++F +G ITS V D K++ F F+N+ D + A ++
Sbjct: 191 KFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIV--KTDNKNRKFCFINYADSESAKNAM 248
Query: 277 EALNGKKFDD 286
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 102/165 (61%), Gaps = 9/165 (5%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YVG Q + R LK KF+ E+ +K +G+NLY+KNLDD+I D LKELF +GTIT
Sbjct: 408 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 467
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQF 409
S KVMRD S+G GFV F+ EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ
Sbjct: 468 SAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 527
Query: 410 SQMRPPVGPRM------PM-YP-PVAPGLG-QQLFYGQGPPIIPP 445
P+ M PM YP P +P L Q G P++ P
Sbjct: 528 RFRMHPIRHHMNNALNSPMQYPNPQSPQLQFNQNTLNYGRPVLTP 572
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 136/261 (52%), Gaps = 23/261 (8%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKL 188
+++ +L++ + L++ F+T G++ S +V DS+ +S GY +V + N A+ A+D L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N + + L R+ + K+ N++VKNL ++ L F FG I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V D GKSK +GFV+++D + A ++E +NG + K YVG K+ ER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERA------- 186
Query: 309 EQSLKETAD-KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T D KF NLYVKN DS+++ LK+LFS +G ITS V D +R F+
Sbjct: 187 ------TNDTKF--TNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKTDNK--NRKFCFI 236
Query: 368 AFSTAEEASKALTEMNGKMVV 388
++ +E A A+ +NGK +
Sbjct: 237 NYADSESAKNAMENLNGKKIT 257
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L+E TE L +IF G ++S V RD+ KS + +VN+ + DA R+++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + + + + SL+++ N++VKNLD SI + L
Sbjct: 78 NYTNIKGQPARLMWSHR------------DPSLRKSG----AGNIFVKNLDKSIDNKALF 121
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS FG I SCKV D G S+ GFV + E A +A+ ++NG + SK +YV +
Sbjct: 122 DTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIK 181
Query: 400 KEER 403
+ ER
Sbjct: 182 RSER 185
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + +++V +LD S+++ L+D F+ G ++S +V D +S YG+V+Y A
Sbjct: 99 RKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESA 157
Query: 95 TRALDELNFTPLNGKPIRIMYSYR--DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
A++++N L K + + + + + + N+++KN S+ L FS +G
Sbjct: 158 KEAIEKVNGIQLGSKNVYVGHFIKRSERATNDTKFTNLYVKNFPDSVTEAHLKQLFSPYG 217
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
I S V TD+ ++R + F+ + + ESAK+A++ LNG + D
Sbjct: 218 EITSMIVKTDN--KNRKFCFINYADSESAKNAMENLNGKKITD 258
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L + F +G I S KV D QS+G+GFV F +E A A+ ++
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEM 500
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
+ ++N K ++VG ++++R S
Sbjct: 501 HLKIINGKPLYVGLAEKREQRLS 523
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+ +LD +++D L +LF G + S +V RD +S G+G+V + EA +A+ E
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQSKGFGFVCFAQQEEANKAVTE 499
Query: 101 LNFTPLNGKPIRI 113
++ +NGKP+ +
Sbjct: 500 MHLKIINGKPLYV 512
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 170/407 (41%), Positives = 246/407 (60%), Gaps = 33/407 (8%)
Query: 40 TSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TS+YVGDL DL + + +LF+ + VVSV+VCRD++T+RSLGYGYVN+ +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTPADAEKV 67
Query: 98 LDELNFTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+D LN+T + G+ IR+M+S RDP RKSG N+F+K LD +++ K L F+ G +LS
Sbjct: 68 IDALNYTGITPGRQIRVMFSIRDPIQRKSGMNNVFVKKLDTAVNAKELQAAFTKCGRVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G S+GYGFVQF+ + AK+A++ ++G L D +V V PFLR+ +RE A K+
Sbjct: 128 CKVALDSAGNSKGYGFVQFETADGAKAALE-MDGSKLGDCEVVVAPFLRRVDREVMAAKS 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KNL T E D+K FG + S + A +K F V F++ + A +++
Sbjct: 187 -FRNIYIKNLKATVAEADVKTTVETFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVKAI 244
Query: 277 EALN-----GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
ALN G + V +A K ER+ E K SL + G NLYVK+L D
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDREKKKA--ASLYQN----HGRNLYVKHLPD 298
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VS 389
I+DD+L+E+F+ FG ITSC +M++PNG +G FV F + AS AL +NG +
Sbjct: 299 DITDDRLREIFAPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGHSLDNSK 358
Query: 390 KPLYVALAQRK-------EERRARLQF-SQMRPPVG------PRMPM 422
K LYV+ A++K ++RRA ++ S+M PP+ PR P
Sbjct: 359 KLLYVSQAEQKDMRIRLLQQRRAAMRHQSRMAPPMNTFPQQWPRHPF 405
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 547 QPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
Q Q G L+ SPEQQ+ LGE LY + LE NAAK+TGMLLEM + E+ +L
Sbjct: 463 QQRQDGVDMDYLSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILG 522
Query: 607 SPEALKAKVAEAMEVLRNVAQQQATG 632
AL +K+ EA NV QQ TG
Sbjct: 523 DQFALLSKIQEA-----NVVLQQHTG 543
>gi|330843410|ref|XP_003293648.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
gi|325076001|gb|EGC29827.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
Length = 735
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/374 (42%), Positives = 238/374 (63%), Gaps = 34/374 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TSLYVGDL VN+ L +LF+++G+ + S+ VCRD +T RSLGY YVN+ H+A RA
Sbjct: 120 TSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDAERA 179
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN++ ++GKP RIM+SYRDPT RK+ GN+F+KNL+K++DN L+D FS+FGNILSC
Sbjct: 180 LDTLNYSMIHGKPCRIMWSYRDPTKRKTNVGNVFVKNLEKAVDNAMLYDVFSSFGNILSC 239
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV + G S+GYG+V F+ ES+ AI+++NG L+ K +F PF+ K ER +K
Sbjct: 240 KVEYEK-GISKGYGYVHFETSESSGKAIERINGTLVLGKPIFCEPFVAKVERYKVENK-- 296
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR--S 275
V+ +N E+ T++ +++ +FG I + D+ GKSK G V F + +DA + +
Sbjct: 297 ---VFFRNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSKGLGTVEFKNCEDAQKLLA 353
Query: 276 VEA----LNGK--KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
VEA +NGK FD + + K ER EL+ K+T D+ L++ N+
Sbjct: 354 VEADSIQINGKPITFD-------RVKNKIERVTELR-------KKTTDQ----TLFLSNI 395
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D+SI + +KE FS+ G I CK+++D +G ++G GF+ FS EA+KAL +NG +
Sbjct: 396 DESIEKETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFSEVSEANKALEALNGFTFGN 455
Query: 390 KPLYVALAQRKEER 403
K + V+L+ KE++
Sbjct: 456 KQITVSLSSNKEQQ 469
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 138/243 (56%), Positives = 179/243 (73%), Gaps = 3/243 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD V ++ LY++FN + V SVR+CRD TRRSLGY YVNYN+ +A RA
Sbjct: 10 VSASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LNFT + G+P RIM+ RDP R++ GN+F+KNLDKSIDNK L DTFS FGNI+SC
Sbjct: 70 LDTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSC 129
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ATD G+S GYGF+ F++ +SAK AI +LNG +L D+ ++VG F +K ER S DKT
Sbjct: 130 KIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKT- 188
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVK++ ++ TED L KIFG +G I+S + D+ G+ FGFVNF++PD A +V
Sbjct: 189 FTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP--FGFVNFENPDSAKAAVA 246
Query: 278 ALN 280
AL+
Sbjct: 247 ALH 249
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/379 (34%), Positives = 209/379 (55%), Gaps = 41/379 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ L+D F+ G ++S ++ D+ + SLGYG++++ A A A+
Sbjct: 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGK-SLGYGFIHFEHADSAKEAISR 159
Query: 101 LNFTPLNGKPIRI--------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
LN L +PI + +S +D T N+++K++ KS L+ F +G
Sbjct: 160 LNGAVLGDRPIYVGKFQKKAERFSEKDKTFT-----NVYVKHIPKSWTEDLLYKIFGVYG 214
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
I S + +DS G R +GFV F+N +SAK+A+ L+ L+ V E +ST
Sbjct: 215 KISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVTPVGV---------ELDST 263
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA---VMRDADGKSKCFGFVNFDDP 269
A+ + N + +E K+ GE TA +D+ G S N D
Sbjct: 264 AETS------ADNEAGADSETSSKQESGEASNKKQTASSETSKDSSGTSNEEFAQNEDGS 317
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
D S + YV +AQKK ER++ LK + E ++KE+ +++G+NLYVKNL
Sbjct: 318 ADKNVSADV------QPNRLYVSRAQKKNERQVVLKSQHE-AVKESHQRYQGVNLYVKNL 370
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DSI+++ L+ +F FGT++S + D +G+SRG GFV+F + +EA+KA+TEM+ K+V
Sbjct: 371 ADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRG 430
Query: 390 KPLYVALAQRKEERRARLQ 408
KPLYV L +RKE+R RLQ
Sbjct: 431 KPLYVGLHERKEQRALRLQ 449
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 22/276 (7%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ +LD + L++ F++ + S ++ D+L + S GY +V +++ A+ A+
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D LN + + + LR D NV+VKNL ++ L F FG I
Sbjct: 71 DTLNFTCIRGRPCRIMWCLRDPASRRNND----GNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S + D +GKS +GF++F+ D A ++ LNG D+ YVGK QKK ER E
Sbjct: 127 MSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKD 186
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
F N+YVK++ S ++D L ++F +G I+S + D G R G
Sbjct: 187 KTF-------------TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFG 231
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
FV F + A A+ ++ +V P+ V L E
Sbjct: 232 FVNFENPDSAKAAVAALHNALVT--PVGVELDSTAE 265
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625
Q+ LLGE L+P++ Q + + A K+TGM+LEMD E+L LL S +K KV EAM VL
Sbjct: 681 QKQLLGERLFPIIAQFQPELAGKITGMMLEMDNNELLELLSSDIEIKNKVDEAMVVLERA 740
Query: 626 AQQQAT 631
QQ +T
Sbjct: 741 QQQIST 746
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +L S+N+ L +F G V SV + D S S G+G+V++ + EA
Sbjct: 358 QRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESG-VSRGFGFVSFLSPDEA 416
Query: 95 TRALDELNFTPLNGKPIRI 113
T+A+ E++ + GKP+ +
Sbjct: 417 TKAITEMHLKLVRGKPLYV 435
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 288 bits (736), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 138/243 (56%), Positives = 179/243 (73%), Gaps = 3/243 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD V ++ LY++FN + V SVR+CRD TRRSLGY YVNYN+ +A RA
Sbjct: 10 VSASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LNFT + G+P RIM+ RDP R++ GN+F+KNLDKSIDNK L DTFS FGNI+SC
Sbjct: 70 LDTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSC 129
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ATD G+S GYGF+ F++ +SAK AI +LNG +L D+ ++VG F +K ER S DKT
Sbjct: 130 KIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKT- 188
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVK++ ++ TED L KIFG +G I+S + D+ G+ FGFVNF++PD A +V
Sbjct: 189 FTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP--FGFVNFENPDSAKAAVA 246
Query: 278 ALN 280
AL+
Sbjct: 247 ALH 249
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 209/379 (55%), Gaps = 41/379 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ L+D F+ G ++S ++ D+ + SLGYG++++ A A A+
Sbjct: 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGK-SLGYGFIHFEHADSAKEAISR 159
Query: 101 LNFTPLNGKPIRI--------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
LN L +PI + +S +D T N+++K++ KS L+ F +G
Sbjct: 160 LNGAVLGDRPIYVGKFQKKAERFSEKDKTFT-----NVYVKHIPKSWTEDLLYKIFGVYG 214
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
I S + +DS G R +GFV F+N +SAK+A+ L+ L+ V E +ST
Sbjct: 215 KISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVTPVGV---------ELDST 263
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA---VMRDADGKSKCFGFVNFDDP 269
A+ V N + +E K+ GE TA +D+ G S N D
Sbjct: 264 AETP------VDNEAGADSETSSKQESGEASNKKQTASGEASKDSSGTSNEESAQNEDGS 317
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
D S + YV +AQKK ER++ LK + E ++KE+ +++G+NLYVKNL
Sbjct: 318 ADKNVSADV------QPNRLYVSRAQKKNERQVVLKSQHE-AVKESHQRYQGVNLYVKNL 370
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DSI+++ L+ +F FGT++S + D +G+SRG GFV+F + +EA+KA+TEM+ K+V
Sbjct: 371 ADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRG 430
Query: 390 KPLYVALAQRKEERRARLQ 408
KPLYV L +RKE+R RLQ
Sbjct: 431 KPLYVGLHERKEQRALRLQ 449
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 22/276 (7%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ +LD + L++ F++ + S ++ D+L + S GY +V +++ A+ A+
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D LN + + + LR D NV+VKNL ++ L F FG I
Sbjct: 71 DTLNFTCIRGRPCRIMWCLRDPASRRNND----GNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S + D +GKS +GF++F+ D A ++ LNG D+ YVGK QKK ER E
Sbjct: 127 MSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKD 186
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
F N+YVK++ S ++D L ++F +G I+S + D G R G
Sbjct: 187 KTF-------------TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFG 231
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
FV F + A A+ ++ +V P+ V L E
Sbjct: 232 FVNFENPDSAKAAVAALHNALVT--PVGVELDSTAE 265
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625
Q+ LLGE L+P++ Q + + A K+TGM+LEMD E+L LL S +K KV EAM VL
Sbjct: 681 QKQLLGERLFPIIAQFQPELAGKITGMMLEMDNNELLELLSSDIEIKNKVDEAMVVLERA 740
Query: 626 AQQQAT 631
QQ +T
Sbjct: 741 QQQIST 746
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +L S+N+ L +F G V SV + D S S G+G+V++ + EA
Sbjct: 358 QRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESG-VSRGFGFVSFLSPDEA 416
Query: 95 TRALDELNFTPLNGKPIRI 113
T+A+ E++ + GKP+ +
Sbjct: 417 TKAITEMHLKLVRGKPLYV 435
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 288 bits (736), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 137/243 (56%), Positives = 178/243 (73%), Gaps = 3/243 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD V ++ LY++FN + V SVR+CRD TRRSLGY YVNYN+ +A RA
Sbjct: 10 VSASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LNFT + +P RIM+ RDP R++ GN+F+KNLDKSIDNK L DTFS FGNI+SC
Sbjct: 70 LDTLNFTCIRSRPCRIMWCLRDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSC 129
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ATDS G S GYGF+ F++ ESAK AI +LNGM+L D+ ++VG F RK ER S DKT
Sbjct: 130 KIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAERFSEKDKT- 188
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVK++ +T +E+ L +FG +G I+S + D+ G+ FGFVNF+DP+ A ++V
Sbjct: 189 FTNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKGRP--FGFVNFEDPESAKKAVA 246
Query: 278 ALN 280
L+
Sbjct: 247 NLH 249
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 206/677 (30%), Positives = 316/677 (46%), Gaps = 153/677 (22%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ L+D F+ G ++S ++ D S SLGYG++++ A A+
Sbjct: 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATD-SEGNSLGYGFIHFEHPESAKEAIAR 159
Query: 101 LNFTPLNGKPIRI--------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
LN L +PI + +S +D T N+++K++ K+ + LH F +G
Sbjct: 160 LNGMILGDRPIYVGKFQRKAERFSEKDKTFT-----NVYVKHIPKTWSEETLHTLFGVYG 214
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
I S + +DS G R +GFV F++ ESAK A+ L+ L+ +G L E T
Sbjct: 215 KISSLVLQSDSKG--RPFGFVNFEDPESAKKAVANLHNALVTP----LGVELNSNNSERT 268
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD-- 270
E+ +D L I T D ++ + +DP
Sbjct: 269 ---------------ESGKDDGLSSISSNTESSDETVESNDYKQRN------DKEDPQEA 307
Query: 271 DAARSVEALNGKKFDDK--EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
D ++ + N FD + YV +AQK+ ER++ LK + E + +E+ ++++G+NLYVKN
Sbjct: 308 DVEKNSDEENSVPFDVQPNRLYVSRAQKRNERQVVLKSQHEAA-RESQNRYQGVNLYVKN 366
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
L +S+++ L+ LF +GTI+S + D +GISRG GFV+F + +EA+KA+TEM+ K+V
Sbjct: 367 LSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEATKAITEMHLKLVR 426
Query: 389 SKPLYVALAQRKEERRARLQFSQMR----PPV-----------------------GPRM- 420
KPLYV L +RKE+R RLQ ++R PPV P+M
Sbjct: 427 GKPLYVGLHERKEQRALRLQ-QRIRGGTVPPVLRPGTIPPGPPTAVHGAPMQFGAPPQMY 485
Query: 421 --PMYPPVAPGLGQQ--------------------------LFYGQGPPIIPPQ---PGF 449
P P VA G Q + YG G +PPQ
Sbjct: 486 FIPGNPAVAATAGMQHNRTPMVGSFPNQGVMASPWRPNPTRIPYGTG--ALPPQMTAQSV 543
Query: 450 GYQQQLVPGMR----PNYFVPMVQPGQ----QNQRPGGR-----------RSGTGPMQQA 490
GY PG+ N +P P QN R GG + G+ P
Sbjct: 544 GYN----PGVNGIPSNNGSIPQTGPQSVNPAQNIRTGGNSQRIHNRHMQGQGGSRPTHGH 599
Query: 491 QQPIPLMQPRMLPRGRIYRYPPGCNIPDVP-VAGVPGGML----PGPYDIGGMPFRDAAF 545
Q IP + +++P D P V +PGG++ G + +P D
Sbjct: 600 QVQIP---------KQSFKFPSHIKTSDQPRVDMIPGGLVNMDPSGISSVPMIPQSDIPL 650
Query: 546 SQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
+ AS LA ASP Q+ LLGE L+P++ Q + + A K+TGM+LEMD E+L +L
Sbjct: 651 T--------ASTLATASPSMQKQLLGERLFPIIAQYQPELAGKITGMMLEMDNNELLEIL 702
Query: 606 ESPEALKAKVAEAMEVL 622
S +K KV EAM VL
Sbjct: 703 NSDAEIKNKVDEAMIVL 719
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 137/278 (49%), Gaps = 22/278 (7%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ +LD + L++ F++ + S ++ D+L + S GY +V +++ A+ A+
Sbjct: 11 SASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D LN + + + LR + + + NV+VKNL ++ L F FG I
Sbjct: 71 DTLNFTCIRSRPCRIMWCLR----DPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S + D++G S +GF++F+ P+ A ++ LNG D+ YVGK Q+K ER E
Sbjct: 127 MSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAERFSEKD 186
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
F N+YVK++ + S++ L LF +G I+S + D G R G
Sbjct: 187 KTF-------------TNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKG--RPFG 231
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
FV F E A KA+ ++ +V PL V L ER
Sbjct: 232 FVNFEDPESAKKAVANLHNALVT--PLGVELNSNNSER 267
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 138/256 (53%), Positives = 187/256 (73%), Gaps = 3/256 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD+ TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++R+SG GN+FIKNL+K+IDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
+D G S+G+GFV F+ EE+A+ AI+K+NGMLLND++VFVG F ++ERE+ F
Sbjct: 132 SDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L +FG FG I S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKA 294
+NGK+ + K YVG+A
Sbjct: 251 MNGKELNGKHIYVGRA 266
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 149/270 (55%), Gaps = 16/270 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS+ G ILS +V D + + S GY V F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K V + +R+ + ++ NV++KNL++T L F FG I S
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V+ D +G SK GFV+F+ + A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG-- 184
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T K E N+Y+KN D + D+ L LF FG I S KVM D G S+G GFV
Sbjct: 185 -------TGTK-EFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFV 236
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+F E+A KA+ EMNGK + K +YV A
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 99/189 (52%), Gaps = 18/189 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + VNF+ P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+ + N+++KNL+ +I + L
Sbjct: 72 MNFDVIKGKPVRIMWSQR------------DPSLRRSGVG----NVFIKNLNKTIDNKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 399 RKEERRARL 407
++ER A L
Sbjct: 175 SQKEREAEL 183
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D L LF + GQ++SV+V D +S G+G+V++ +A +A+D
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVD 249
Query: 100 ELNFTPLNGKPIRI 113
E+N LNGK I +
Sbjct: 250 EMNGKELNGKHIYV 263
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 211/613 (34%), Positives = 305/613 (49%), Gaps = 94/613 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S S++VG LD ++N+ +LYD F ++G V SVRVC D T++SLGYGYVN+ +A +AL
Sbjct: 8 SPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKAL 67
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D+ L K IRI RDP+ R+SG NI +K L ++D AL + FS FG + +
Sbjct: 68 DQAGVK-LGTKHIRIAKIQRDPSKRRSGVTNIVVKKLPSTVDTYALKEMFSKFGRLTAIG 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ATD G+SRGY + ++ EESA A+ +LNG+ ++D + V R Q ++
Sbjct: 127 LATDEKGESRGYARISYEKEESAVEAVRELNGVSIDDCSITVE---RYQPHHREEQLKQY 183
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL + ++ LK++F +FG +TS V + S F +V + + AA++VE
Sbjct: 184 TNLYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVAYATHEAAAKAVEE 243
Query: 279 LNGKKFD-DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+ K KE + RE + + + + NLYVKN DD+++ +K
Sbjct: 244 LDEKSSTLAKEGMKLSVCRFRSREERQRERERVRRERQQQHGKYPNLYVKNFDDTVTSEK 303
Query: 338 LKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KPLYVA 395
LKELF FG S VM D +SR GFV+F AS+A+ E++G + +PL+V
Sbjct: 304 LKELFERFGETVSVSVMMDKATQVSRCFGFVSFKEQSAASQAIQELHGSTALGPRPLFVT 363
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
A RK+ RR L+ + + PRM PP+ G ++ PQ GF
Sbjct: 364 YALRKDARRQTLEDIRNK---QPRM-RQPPMG---------GLMSGMMAPQLGF------ 404
Query: 456 VPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCN 515
M P P + G +P M PRM
Sbjct: 405 ---MNP----PTMFNG----------------------LPFMNPRM-------------- 421
Query: 516 IPDVPVA-GVPGGMLP-GPYDIGGMPFRDAAFSQPMQT---------------------- 551
P +P A G+ G M P P + + R A PMQ
Sbjct: 422 -PMMPSAMGMGGPMRPMAPAPMNQVRARPAPQRPPMQAMMAPQQQPQLHPQQPQPPVPQG 480
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
L++ LA+ PEQQ+ +LGE LY + + AAKVTGMLLEMD +E+L+LL+SP L
Sbjct: 481 HNLSTMLASLPPEQQKNVLGERLYNYIVRNNPSVAAKVTGMLLEMDNSEILNLLDSPSML 540
Query: 612 KAKVAEAMEVLRN 624
KV EA++VL N
Sbjct: 541 DTKVQEALDVLNN 553
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 205/602 (34%), Positives = 309/602 (51%), Gaps = 78/602 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S S++VG LD ++N+ +LYD F ++G V SVRVC D T++SLGYGYVN+ +A +AL
Sbjct: 8 SPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKAL 67
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D+ L K IRI RDP+ R+SG NI +K L ++D AL + FS +G + +
Sbjct: 68 DQAGVK-LGTKHIRIAKIQRDPSKRRSGVTNIIVKKLPPTVDTYALKEMFSKYGRLTAIG 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ATD G+SRGY + ++ EESA A+ +LNG+ ++D + V R Q ++
Sbjct: 127 LATDEKGESRGYARISYEKEESAVDAVRELNGVSIDDCAITVE---RYQPHHREEQLKQY 183
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAARSVE 277
N+YVKNL + ++ LK++F FG +TS V RD G+ FG+V + + AA++VE
Sbjct: 184 TNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKV-RDLAGRPTVGFGYVAYATHEAAAKAVE 242
Query: 278 ALNGKKFDDKEWYVGKAQKKYE--------REMELKGKFEQSLKETADKFEGLNLYVKNL 329
L DDKE + K K + + + ++ K+ NLYVKN
Sbjct: 243 EL-----DDKESPLAKEGMKLSVCRFRSREERKRERERLRRERQQQHSKYP--NLYVKNF 295
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
DD+++ ++LK LF FG S VM D +SR GFV+F A++A+ E++G +
Sbjct: 296 DDTVTSERLKALFDPFGETVSVSVMMDKATKVSRCFGFVSFKEQSSAAQAIQELHGSTAL 355
Query: 389 S-KPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQP 447
+PL+V+ A RK+ RR L+ + + P + PM + +G QL + P +
Sbjct: 356 GPRPLFVSYALRKDARRQTLEDMRNKQPRMRQPPMGGLMGGMMGPQLSFMNPPAMFNGMH 415
Query: 448 GFGYQQQLVPG-------MRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPR 500
+ ++P MRP PM Q RPG +R P MQ
Sbjct: 416 FMNTRMPMMPSTMGMGGPMRPMGPTPM---NQVRARPGPQR-------------PPMQSM 459
Query: 501 MLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALAN 560
M P+ + + IP PVA Q L++ LA+
Sbjct: 460 MAPQQQSH-----PQIPQPPVA---------------------------QGQNLSTVLAS 487
Query: 561 ASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 620
+P+QQ+ +LGE LY + + AAKVTGMLLEMD +E+L+LL++ L KV EA++
Sbjct: 488 MTPDQQKNVLGERLYNYIVRNNPSFAAKVTGMLLEMDNSEILNLLDNHSLLDTKVQEALD 547
Query: 621 VL 622
VL
Sbjct: 548 VL 549
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 233/381 (61%), Gaps = 38/381 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TSLYVGDL VN+ L +LF+++G+ + S+ VCRD +T RSLGY YVN+ H+A RA
Sbjct: 184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERA 243
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN+T ++GKP RIM+SYRDPT RK+ GNIF+KNL+K +DN L+DTFS+FGNILSC
Sbjct: 244 LDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSC 303
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV + G S+GYG+V F+ +SA+ AI+K+NG L+ K + V F+ K ER +K
Sbjct: 304 KVEFEK-GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVENK-- 360
Query: 218 FNNVYVKNLSETTTEDDLKK-IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA---- 272
V+ +N E+ T + L++ + FG I S + DA+GKSK G V F + +DA
Sbjct: 361 ---VFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKIL 417
Query: 273 ----ARSVEALNGK----------KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
A + ++G + + K + + + K ER F + K+T D
Sbjct: 418 TESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVER-------FTEYRKKTTD- 469
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378
L+L++ N+D+SI D +KE F++ GTI K+++D N ++G GF++FS +EA KA
Sbjct: 470 ---LSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKA 526
Query: 379 LTEMNGKMVVSKPLYVALAQR 399
L +NG SK + V+ + +
Sbjct: 527 LDSLNGFTFGSKQIQVSFSNK 547
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 20/190 (10%)
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFG--IITSTAVMRDADG-KSKCFGFVNFDDPDDAA 273
+ ++YV +L+ E L ++F + G I S V RD++ +S + +VNF + DA
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+++ LN K + + + T K N++VKNL+ +
Sbjct: 242 RALDTLNYTLVHGKPCRIMWSYRD----------------PTKRKTNVGNIFVKNLEKGV 285
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+ L + FS FG I SCKV + GIS+G G+V F T + A KA+ ++NG +++ KP+
Sbjct: 286 DNAMLYDTFSSFGNILSCKVEFEK-GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPIN 344
Query: 394 VALAQRKEER 403
V K ER
Sbjct: 345 VERFVSKVER 354
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SL++ ++D S++ + + F + G ++ +++ +D + R G+G+++++ EA +ALD
Sbjct: 471 SLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNK-GFGFISFSEIQEAQKALDS 529
Query: 101 LNFTPLNGKPIRIMYSYRD 119
LN K I++ +S +D
Sbjct: 530 LNGFTFGSKQIQVSFSNKD 548
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 207/584 (35%), Positives = 295/584 (50%), Gaps = 114/584 (19%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L ++ L + FS G +LS +V D+ + S GY +V F A+ A+D
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 188 LNGMLLNDK---------------------------QVFVGPFLRKQERESTADKT--RF 218
+N L+ K +VFVG F + +R +T +F
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGETAKQF 152
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN + ++ L+K+F +FG ITS VM +GKSK FGFV F +P++A +V+A
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQA 211
Query: 279 LNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
L+ + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD+++ DD
Sbjct: 212 LHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDD 271
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
LK+ F +G ITS KVM D NG S+G GFV F EEA+ A+TEMN KMV SKPLYVA+
Sbjct: 272 GLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 331
Query: 397 AQRKEERRARLQFSQMRPPVGPRM-------PMYPPVAPGLG--------QQLFYGQGPP 441
AQRKE+RRA+L M+ RM MY P PG G QQ + G
Sbjct: 332 AQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQ 391
Query: 442 IIPPQPGFGYQQQLV----------PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQ 491
++ P +G Q Q PG+ N M +P QNQ+ G R GP QQ
Sbjct: 392 MVRPGGRWGMQNQYPVQNQYMMAQGPGVYQNR---MGRP--QNQQGGPR----GPPQQYN 442
Query: 492 QPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML---------------PGPYD-- 534
Q + G + PP P V VP P PY
Sbjct: 443 Q--------VAQGGVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAY 494
Query: 535 --------IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLE--HD 584
IGG +P+ + LA+ A+P++Q+ LLGE +Y L+++L H
Sbjct: 495 QQRPQGIVIGG--------QEPLTSAMLAA----AAPQEQKQLLGERIYALIEKLYPGHK 542
Query: 585 NAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628
+A K+TGM+LE+D +E++ +L+ E ++KV EA VL + +Q
Sbjct: 543 DAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSAQKQ 586
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 179/323 (55%), Gaps = 48/323 (14%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +A R
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDK------------------- 137
A+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGET 148
Query: 138 --------------SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
+ + L F+ FGNI SC+V T G+S+G+GFV F N E A++
Sbjct: 149 AKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAET 207
Query: 184 AIDKLNGMLL--NDKQVFVGPFLRKQERESTADKTRFN------------NVYVKNLSET 229
A+ L+ + D ++ V +K ER + K N+YVKNL ET
Sbjct: 208 AVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDET 267
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
+D LKK F +G ITS VM D +G+SK FGFV F+ P++A +V +N K K
Sbjct: 268 VDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPL 327
Query: 290 YVGKAQKKYEREMELKGKFEQSL 312
YV AQ+K +R +L ++ Q L
Sbjct: 328 YVAIAQRKEDRRAQLASQYMQRL 350
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 139/257 (54%), Positives = 186/257 (72%), Gaps = 6/257 (2%)
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
++ LN+ L GKP+RIM+S RDP+ R SG GN+F+KNLD+SIDNK L D FS FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVA D+ G S+GYGFVQF ++ S +A + NG L+ ++ + V PF+ + + DK+R
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ----WDKSR 116
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL ET T+ DLK++FGEFG ITS VM+D +GKS+ FGFVNF+ + A ++
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFE-QSLKETADKFEGLNLYVKNLDDSISD 335
E +NG D+KE +VG+AQ+K R +LK KFE + + +G+NLYVKNLDDS+ +
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 336 DKLKELFSEFGTITSCK 352
KL+ELFSEFGTITSCK
Sbjct: 237 TKLEELFSEFGTITSCK 253
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 19/224 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ QL D+F+ G+V+S +V RD S S GYG+V + + A +
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTACNF 90
Query: 101 LNFTPLNGKPIRIM-YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T + + I + + R + N+++KNL ++ + L F FG I S V
Sbjct: 91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRF 218
D G+SR +GFV F+ E+A +AI+K+NG+++++K++ VG RK R T D K +F
Sbjct: 151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR--TEDLKAKF 208
Query: 219 N--------------NVYVKNLSETTTEDDLKKIFGEFGIITST 248
N+YVKNL ++ L+++F EFG ITS
Sbjct: 209 ELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 252
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 104/207 (50%), Gaps = 19/207 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NV+VKNL E+ L +F FG + S V RDA G SK +GFV F +
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG ++ +V + G++++S T N+YVKNL ++ +D LK
Sbjct: 92 NGTLIRNQHIHVCPFVSR--------GQWDKSRVFT-------NVYVKNLVETATDADLK 136
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
LF EFG ITS VM+D G SR GFV F AE A A+ +MNG +V K L+V AQR
Sbjct: 137 RLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQR 196
Query: 400 KEER----RARLQFSQMRPPVGPRMPM 422
K R +A+ + ++ + R M
Sbjct: 197 KTNRTEDLKAKFELEKIIRDMKTRKGM 223
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 18/143 (12%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V T++YV +L + D+ L LF + G++ S V +D +S +G+VN+ A A A
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTA 175
Query: 98 LDELNFTPLNGKPIRIMYSYR--------------DPTIR--KSGAG-NIFIKNLDKSID 140
++++N ++ K + + + R + IR K+ G N+++KNLD S+D
Sbjct: 176 IEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVD 235
Query: 141 NKALHDTFSTFGNILSCKVATDS 163
N L + FS FG I SCK A +S
Sbjct: 236 NTKLEELFSEFGTITSCKYACNS 258
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 133/231 (57%), Positives = 173/231 (74%), Gaps = 3/231 (1%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD +NF + GKP+RIM+
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F
Sbjct: 61 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 119
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTED 233
+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++
Sbjct: 120 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 179
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+ +NGK+
Sbjct: 180 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 230
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 139/243 (57%), Gaps = 16/243 (6%)
Query: 144 LHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L++ FS G ILS +V D + + S GY +V F A+ A+D +N ++ K V +
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI-- 58
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+R+ + K+ N+++KNL ++ L F FG I S V+ D +G SK +G
Sbjct: 59 --MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYG 115
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
FV+F+ + A R++E +NG +D++ +VG+ + + ERE EL + + E
Sbjct: 116 FVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK----------EFT 165
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+Y+KN + + D++LK+LF +FG S KVM D +G S+G GFV+F E+A KA+ EM
Sbjct: 166 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 225
Query: 383 NGK 385
NGK
Sbjct: 226 NGK 228
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 94/159 (59%), Gaps = 8/159 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 74 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 131
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 132 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 191
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
LS KV TD G+S+G+GFV F+ E A+ A+D++NG L
Sbjct: 192 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 230
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 20/167 (11%)
Query: 243 GIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G I S V RD +S + +VNF P DA R+++ +N K + +Q+
Sbjct: 9 GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR----- 63
Query: 302 MELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
+ SL+++ G+ N+++KNLD SI + L + FS FG I SCKV+ D NG
Sbjct: 64 -------DPSLRKS-----GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG- 110
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL 407
S+G GFV F T E A +A+ +MNG ++ + ++V + ++ER A L
Sbjct: 111 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 157
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 161 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 217
Query: 94 ATRALDELN 102
A +A+DE+N
Sbjct: 218 AQKAVDEMN 226
>gi|293335667|ref|NP_001167831.1| uncharacterized protein LOC100381531 [Zea mays]
gi|223944311|gb|ACN26239.1| unknown [Zea mays]
Length = 249
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/247 (61%), Positives = 186/247 (75%), Gaps = 12/247 (4%)
Query: 412 MRPPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMRP-----NYFV 465
M P VGPRMPM+PP PG+GQQLFYGQ PP I PQ GF +QQ ++PGMRP N+ +
Sbjct: 6 MAPSVGPRMPMFPPSVPGVGQQLFYGQPPPAFINPQAGFAFQQPMMPGMRPGGPMPNFMM 65
Query: 466 PMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL-MQPRMLPRG-RIYRYPPGCNIPDVPVAG 523
PMVQ GQQ QRP GRR+G+G MQQ P+P+ Q ++ PRG R YRY G +PD +
Sbjct: 66 PMVQQGQQPQRPAGRRAGSGGMQQ---PMPMGSQQQIFPRGGRGYRYATGRGMPDPGMHN 122
Query: 524 VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEH 583
V G ++P PY++GGM RDA SQP+ GALA+ALANASP+QQR +LGENLYPLV+QLE
Sbjct: 123 V-GAVMPSPYEMGGMAMRDAGVSQPVPIGALATALANASPDQQRLMLGENLYPLVEQLER 181
Query: 584 DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLS 643
+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLR+ Q + S ++A+LS
Sbjct: 182 EQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNASTEQQLANLS 241
Query: 644 LNDNIVS 650
LND ++S
Sbjct: 242 LNDGVLS 248
>gi|328876647|gb|EGG25010.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 748
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/417 (37%), Positives = 235/417 (56%), Gaps = 41/417 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TSLYVGDL VN+ L +LF+++G+ V S+ VCRD +T RSLGY YVN+ + +A RA
Sbjct: 130 TSLYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDAERA 189
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN++ + G+P RIM+S+RDPT RKS GNIF+KNL+K++DN L DTFST+GNILSC
Sbjct: 190 LDTLNYSLILGRPCRIMWSHRDPTKRKSNVGNIFVKNLEKNVDNALLFDTFSTYGNILSC 249
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ + G S+GYG+V F+N+ES++ AI K+NG +L K + V PF+ K ER +K
Sbjct: 250 KIEYEK-GISKGYGYVHFENQESSEQAILKVNGTILLGKPIIVEPFVSKVER--FKEKKN 306
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
N +++KN+ E T + L++ FG I S + D GK K FV F +DA +E
Sbjct: 307 ENKLFIKNIDENVTSEMLQQELSRFGEIESCNIRTDPTGKPKGLAFVEFKTSEDAQALLE 366
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGK-------------------------FEQSL 312
+ K+ + + K ER +E K +Q+
Sbjct: 367 STEAITILSKQITFDRIKNKVERSIEKNQKLINELNNNNNNHNNNNINHHINSSSLQQNG 426
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
+ + + L L++ N+D + + ++E F++ G I K+ SRG F+ +ST
Sbjct: 427 STSQQQQQNLTLFINNIDMEVDKEIIREEFAKHGNILGIKIK------SRGFAFLTYSTQ 480
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPG 429
EEA+ A+ +MNG + +K L V+L+ ++E+R Q GP MY P G
Sbjct: 481 EEAAVAIEKMNGYVFGTKALVVSLSNSRKEKRIPSDSLQ-----GPNPYMYMPYVRG 532
>gi|281204064|gb|EFA78260.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 617
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 242/433 (55%), Gaps = 49/433 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TSLYVGDL VN+ L +LF+++G+ V S+ VCRD T RSLGY YVN+ + +A RA
Sbjct: 138 TSLYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDAERA 197
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN++ + G+P RIM+S RDPT RKS GNIF+KNLDK +DN L DTFS FGNILSC
Sbjct: 198 LDTLNYSQIMGRPCRIMWSLRDPTKRKSNVGNIFVKNLDKQVDNAMLFDTFSKFGNILSC 257
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ + G S+GYG+V F+ +ES+ AI +NG +L K + V F+ K ER ++ +
Sbjct: 258 KIEYEK-GVSKGYGYVHFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVERFKEKNEHK 316
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+++KN+ E T + L+ FG I S + D +GKSK GFV F +DA R ++
Sbjct: 317 ---LFIKNIDELATVEQLQAELSRFGEIESCIIRLDNNGKSKGLGFVEFKSVEDAQRLMD 373
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE----------------- 320
+ K + + + K ER +E + +Q +
Sbjct: 374 NPEPIQILSKPITIDRIKNKMERNIEHRQIKQQQANGNPNNNNNVVNNSTAPTVAATTTT 433
Query: 321 ------------------------GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
L L++ N+D+SI + ++E F++ GTI K++++
Sbjct: 434 TTTTVDSNGNPTNSSNNNNSVAPTNLTLFIHNIDESIDKEVIREEFAKHGTILGIKIVQE 493
Query: 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA-RLQFSQMRPP 415
NG +RG GF+++ST EEA+ A+ +MNG ++ SKPL V+ + RK ++R +LQ + P
Sbjct: 494 -NGKNRGFGFLSYSTQEEANIAIEKMNGFILGSKPLSVSFSNRKYKKRMQQLQSNGSNDP 552
Query: 416 VGPRMPMYPPVAP 428
P+ + P+ P
Sbjct: 553 SQPQPQPHIPLQP 565
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 182/368 (49%), Positives = 232/368 (63%), Gaps = 23/368 (6%)
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
A +VE +NG D YVG+AQKK ERE EL+ KFEQ +K +G NLY+KNLDDS
Sbjct: 2 AAAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDS 61
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ D+KLKE+FSE+G +TS KVM +P G+SRG GFVA+S EEA +AL+EMNGKM+ KPL
Sbjct: 62 VDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 121
Query: 393 YVALAQRKEERRARLQ--FSQMRPPVGPRMPMY---PPVAPGLGQQLFYGQ-GPPIIPPQ 446
Y+ALAQRKE+RRA LQ FSQ+R P GP + PG Q ++ GQ G ++P Q
Sbjct: 122 YIALAQRKEDRRAHLQALFSQIRAP-GPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQ 180
Query: 447 P-GFGYQQQLVPGMRP-----NYFVP---MVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
P G+G+Q Q +PGMRP N+ VP QP Q R G RR T +QQ Q LM
Sbjct: 181 PIGYGFQPQFMPGMRPGSGPGNFIVPYPLQRQP-QTGPRMGFRRGATN-VQQHIQQQQLM 238
Query: 498 QPRMLPRGRIYR-YPPGCNIPDVPV-AGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALA 555
P R G N D V G+ ++P P D + + A + L
Sbjct: 239 HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISHQKAPL---LPISKLT 295
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S+LA+ASP + +LGE LYPLV++ E + AKVTGMLLEMDQ E+LHL+ESPEALK+KV
Sbjct: 296 SSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKV 355
Query: 616 AEAMEVLR 623
+EA++VLR
Sbjct: 356 SEALDVLR 363
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 83/140 (59%), Gaps = 12/140 (8%)
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTA------------DKTRFNNVYVKNLSETT 230
+A++K+NG+ L D ++VG +K ERE +K++ N+Y+KNL ++
Sbjct: 3 AAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSV 62
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
++ LK++F E+G +TS+ VM + G S+ FGFV + +P++A R++ +NGK K Y
Sbjct: 63 DDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLY 122
Query: 291 VGKAQKKYEREMELKGKFEQ 310
+ AQ+K +R L+ F Q
Sbjct: 123 IALAQRKEDRRAHLQALFSQ 142
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
KS N+++KNLD S+D++ L + FS +GN+ S KV + G SRG+GFV + N E A
Sbjct: 47 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALR 106
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERES 211
A+ ++NG ++ K +++ RK++R +
Sbjct: 107 ALSEMNGKMIGRKPLYIALAQRKEDRRA 134
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LY+ +LD SV+D +L ++F++ G V S +V + S G+G+V Y+ EA RAL
Sbjct: 51 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALS 109
Query: 100 ELNFTPLNGKPIRIMYSYR 118
E+N + KP+ I + R
Sbjct: 110 EMNGKMIGRKPLYIALAQR 128
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 137/266 (51%), Positives = 187/266 (70%), Gaps = 4/266 (1%)
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-- 216
VA D S+GYGFV F+ EESA+ AI+K+NGMLL K+V+VG F + R +T
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETAR 60
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
RF NVY+KN ++ ++ L+K+F +FG ITS AVM DADGKSK FGFV F++P+DA ++V
Sbjct: 61 RFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAV 120
Query: 277 EALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
++ + +++ YV +AQKK ER ELK ++EQ E +++G+NLYVKNLDD+++
Sbjct: 121 TEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVN 180
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
DD LK+ F +G ITS KVM D NG S+G GFV F +EA+KA+TEMNGKM+ +KPLYV
Sbjct: 181 DDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV 240
Query: 395 ALAQRKEERRARLQFSQMRPPVGPRM 420
ALAQRKE+R+A+L M+ RM
Sbjct: 241 ALAQRKEDRKAQLASQYMQRLASIRM 266
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 143/254 (56%), Gaps = 22/254 (8%)
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIK 133
S GYG+V++ A +A++++N L GK + + + R +R+ G N++IK
Sbjct: 9 SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIK 68
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
N +D +AL FS FG I S V D+ G+S+G+GFV F+N E A+ A+ +++ L
Sbjct: 69 NFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYEL 128
Query: 194 --NDKQVFVGPFLRKQERESTADKTRFN-------------NVYVKNLSETTTEDDLKKI 238
+++++V +K ER S K R+ N+YVKNL +T +D LK+
Sbjct: 129 PGTERKLYVCRAQKKNER-SAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQN 187
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F +G ITS VM D +G+SK FGFV F+ PD+A ++V +NGK K YV AQ+K
Sbjct: 188 FEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKE 247
Query: 299 EREMELKGKFEQSL 312
+R+ +L ++ Q L
Sbjct: 248 DRKAQLASQYMQRL 261
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 23/197 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+F T++Y+ + ++ L LF++ G++ S V D + +S G+G+V + +
Sbjct: 59 ARRF--TNVYIKNFADELDKEALEKLFSKFGKITSAAVMVD-ADGKSKGFGFVAFENPED 115
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-------------------NIFIKN 134
A +A+ E++ L G R +Y R + A N+++KN
Sbjct: 116 AEKAVTEMHEYELPGTE-RKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKN 174
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD ++++ L F +G I S KV D G+S+G+GFV F+ + A A+ ++NG ++
Sbjct: 175 LDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMC 234
Query: 195 DKQVFVGPFLRKQERES 211
K ++V RK++R++
Sbjct: 235 TKPLYVALAQRKEDRKA 251
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHD-NAAKVTGMLLEMDQTEVLHLLESPEALKA 613
A LA A P++Q+ +LGE +YPL++++ + K+TGM+LEMD +E+L +LE+ E L++
Sbjct: 443 AHMLAQALPQEQKQMLGERIYPLIERIYQGPDVGKITGMMLEMDNSELLMMLENEELLQS 502
Query: 614 KVAEAMEVL 622
KV+EA VL
Sbjct: 503 KVSEAASVL 511
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 268 bits (685), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 143/330 (43%), Positives = 192/330 (58%), Gaps = 60/330 (18%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + V ++ LY+ F+ G ++S+RVCRD+++RRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNLD SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV---------------------- 198
D G SRG+GFV F+ E+A AI +NGMLLND++V
Sbjct: 132 CDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGRVGSGKRPPSGRS 190
Query: 199 ------------------------FVGPFLRKQERESTADKT-------RFN-----NVY 222
+VG ++ ER+S + R N N+Y
Sbjct: 191 RPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIKQERVNRYQGVNLY 250
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
VKNL + ++ L+K F +G ITS VM ++ G SK FGFV F P++A ++V +NG+
Sbjct: 251 VKNLDDCIDDEKLRKEFSPYGTITSAKVMTES-GHSKGFGFVCFSSPEEATKAVTEMNGR 309
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
K YV AQ+K ER+ L ++ L
Sbjct: 310 IVSTKPLYVALAQRKEERKAILTNQYMHRL 339
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 195/353 (55%), Gaps = 63/353 (17%)
Query: 125 SGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEE 179
+GAG ++++ +L + L++ FS G+I+S +V D + S GY ++ F
Sbjct: 4 TGAGYPLASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPA 63
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ A+D +N ++ + + + +R+ K+ N+++KNL ++ L F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTF 119
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA--------------------------- 272
FG I S V+ D G S+ FGFV+F+ + A
Sbjct: 120 STFGNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGR 178
Query: 273 -------------------ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
A++V ++NGK+ + + YVG+AQK+ ER+ ELK KFEQ +
Sbjct: 179 VGSGKRPPSGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIKQ 238
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373
E ++++G+NLYVKNLDD I D+KL++ FS +GTITS KVM + +G S+G GFV FS+ E
Sbjct: 239 ERVNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTE-SGHSKGFGFVCFSSPE 297
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARL------QFSQMRPPVGPRM 420
EA+KA+TEMNG++V +KPLYVALAQRKEER+A L + S +R V P M
Sbjct: 298 EATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMHRLSTIRTLVAPIM 350
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + + S G+G+V +++ EAT
Sbjct: 243 RYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTE--SGHSKGFGFVCFSSPEEAT 300
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
+A+ E+N ++ KP+ + + R RK+ N ++ L
Sbjct: 301 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMHRLS 340
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 265 bits (677), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 131/183 (71%), Positives = 154/183 (84%), Gaps = 8/183 (4%)
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V+ LNGKKFDDKEWYVG+AQKK REMELK KFE++L+E ADK++ NLY+KNLDDS+
Sbjct: 1 QAVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSV 60
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DDKL+ELF+E+GTITSCKVMRD NG+SRGSGFVAF +AE+AS+AL EMN KMV SKPLY
Sbjct: 61 DDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLY 120
Query: 394 VALAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPP 445
VALAQRKE+R+ARL QFSQ+R P VGPRMPM+PP PG+GQQLFYGQ PP I
Sbjct: 121 VALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINT 180
Query: 446 QPG 448
QP
Sbjct: 181 QPA 183
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 12/139 (8%)
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERE------------STADKTRFNNVYVKNLSETTT 231
A+ +LNG +DK+ +VG +K RE ADK + N+Y+KNL ++
Sbjct: 2 AVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVD 61
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+D L+++F E+G ITS VMRD++G S+ GFV F +DA+R++ +N K K YV
Sbjct: 62 DDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYV 121
Query: 292 GKAQKKYEREMELKGKFEQ 310
AQ+K +R+ L+ +F Q
Sbjct: 122 ALAQRKEDRKARLQAQFSQ 140
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD S+D+ L + F+ +G I SCKV DS G SRG GFV F + E A A+ ++
Sbjct: 50 NLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEM 109
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
N ++ K ++V RK++R++
Sbjct: 110 NSKMVGSKPLYVALAQRKEDRKA 132
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ +T+LY+ +LD SV+D +L +LF + G + S +V RD S S G G+V + +A +
Sbjct: 43 ADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRD-SNGVSRGSGFVAFKSAED 101
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A+RAL E+N + KP+ + + R
Sbjct: 102 ASRALAEMNSKMVGSKPLYVALAQR 126
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 192/275 (69%), Gaps = 13/275 (4%)
Query: 9 QAPV-AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
QA V + P+P G+ +QF S LY GDL VN++ LY++FN +G V
Sbjct: 26 QATVDTTSGDPAPTVGGVPT-------QQFAS--LYAGDLAPDVNEAVLYEVFNGIGPVA 76
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRD TR+SLGY Y+N++ +A RALD LN++P+NG+P R+M+S+RDP +R+SGA
Sbjct: 77 SIRVCRDSVTRKSLGYAYINFHNVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGA 136
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GN+++KNLD++IDNKAL+DTFS FGNILSCKVA G+SRG+GFV F+++ESA++AI K
Sbjct: 137 GNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAK 196
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LNGM + +K V+V F + +R + K F NVY+K++ + TE+ +++ FG FG ITS
Sbjct: 197 LNGMQIGEKTVYVAQFKKTADRSDGSPKN-FTNVYIKHIPPSWTEEKIREEFGAFGEITS 255
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
A+ D G+ F FVNF + + A +VE ++G+
Sbjct: 256 FAMQTDPKGRR--FAFVNFAEFEQARAAVEDMDGE 288
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 130/263 (49%), Gaps = 30/263 (11%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDK 187
+++ +L ++ L++ F+ G + S +V DS+ +S GY ++ F N A+ A+D
Sbjct: 50 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 109
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN +N + L R+ ++ NVYVKNL L F FG I S
Sbjct: 110 LNYSPINGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILS 165
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V DGKS+ FGFV+F+ + A ++ LNG + +K YV +
Sbjct: 166 CKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQ-------------- 211
Query: 308 FEQSLKETADKFEG-----LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
K+TAD+ +G N+Y+K++ S +++K++E F FG ITS + DP G R
Sbjct: 212 ----FKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKG--R 265
Query: 363 GSGFVAFSTAEEASKALTEMNGK 385
FV F+ E+A A+ +M+G+
Sbjct: 266 RFAFVNFAEFEQARAAVEDMDGE 288
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 19/189 (10%)
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARS 275
+F ++Y +L+ E L ++F G + S V RD+ KS + ++NF + DA R+
Sbjct: 47 QFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 106
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSIS 334
++ LN + + + S ++ A + G N+YVKNLD +I
Sbjct: 107 LDTLNYSPINGRPC-----------------RLMWSHRDPALRRSGAGNVYVKNLDRNID 149
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L + FS FG I SCKV P+G SRG GFV F + E A A+ ++NG + K +YV
Sbjct: 150 NKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYV 209
Query: 395 ALAQRKEER 403
A ++ +R
Sbjct: 210 AQFKKTADR 218
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 229/403 (56%), Gaps = 66/403 (16%)
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
MRDA+G S+CFGFVNF+ + A +V+ LNGK D YV +AQKK ER+ ELK KFE
Sbjct: 1 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH 60
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
+ +K + +NLY+KNLDD I+D+ L++LF FG + SCKVM D +G S+G GFV+F+
Sbjct: 61 DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA 120
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPVAP 428
T E+A+ A+ +MNGKMV KPLYVA+AQRKEER+A L F+++R +AP
Sbjct: 121 TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRA--------LATMAP 172
Query: 429 GLGQQLFYGQGPPIIPPQPGFGY--------QQQLVPGMRPNYFVPMVQPGQQNQRPGGR 480
L GP I P Q FG+ G +PN+ M+ P ++PG R
Sbjct: 173 TL--------GPNIAPHQFNFGHGVPALFPPPPPAGFGFQPNFVPNMMMPYNMQRQPGQR 224
Query: 481 RSGTGPMQQAQQPIPLMQPRMLPR---GRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGG 537
+GP P L P + + +R+ P GV
Sbjct: 225 ---SGP-PHGGMPRHLHNPHQMFHQNANQGFRHMPNRR------NGVAN---------PA 265
Query: 538 MPFRDAAFSQPMQ------------------TGALASALANASPEQQRTLLGENLYPLVD 579
M + FS PMQ + L ++LA+A+PEQQR +LG+ L+PLV+
Sbjct: 266 MLHQHHRFSSPMQPMQQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVE 325
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
QL ++ A KVTGMLLE+D+TEVL+L+ESP+ L+ KVAEAM+VL
Sbjct: 326 QLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMKVL 368
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 12/159 (7%)
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA-------- 213
D+ G SR +GFV F+ E A++A+ LNG + D ++V +K ER++
Sbjct: 3 DANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDK 62
Query: 214 ----DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+K + N+Y+KNL + ++ L+K+F FG + S VM D+ G+SK GFV+F
Sbjct: 63 NQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATV 122
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+DA ++ +NGK K YV AQ+K ER+ L F
Sbjct: 123 EDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 161
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 26/153 (16%)
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY---------------------R 118
S +G+VN+ + A A+ LN GK I M Y +
Sbjct: 8 SRCFGFVNFEKSECARNAVKNLN-----GKSIGDMVLYVARAQKKSERQAELKAKFEHDK 62
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
+ K N+++KNLD I+++ L F FG + SCKV DS G+S+G GFV F
Sbjct: 63 NQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATV 122
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
E A +AI K+NG ++ K ++V RK+ER++
Sbjct: 123 EDANNAILKMNGKMVGKKPLYVAVAQRKEERKA 155
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +LY+ +LD +ND L LF G+V S +V D S RS G G+V++ +A A+
Sbjct: 71 TVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLD-SHGRSKGCGFVSFATVEDANNAI 129
Query: 99 DELNFTPLNGKPIRIMYSYR 118
++N + KP+ + + R
Sbjct: 130 LKMNGKMVGKKPLYVAVAQR 149
>gi|414588972|tpg|DAA39543.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 246
Score = 261 bits (667), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 152/247 (61%), Positives = 183/247 (74%), Gaps = 15/247 (6%)
Query: 412 MRPPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMRP-----NYFV 465
M P VGPRMPM+PP PG+GQQLFYGQ PP I PQ GF +QQ L+PGMRP N+ +
Sbjct: 6 MAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQAGFAFQQPLMPGMRPGGPMPNFMM 65
Query: 466 PMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM-QPRMLPRG-RIYRYPPGCNIPDVPVAG 523
PMVQ GQQ QRP GRR+G QQP+P+ Q ++ PRG R YRYP G +PD +
Sbjct: 66 PMVQQGQQPQRPAGRRAGG-----MQQPMPMGGQQQVFPRGGRGYRYPTGRGMPDPGMHS 120
Query: 524 VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEH 583
V G ++P Y++GGMP R+AA QP+ GALA+ALANA P+QQR +LGENLYPLV+QLE
Sbjct: 121 V-GAVMPPSYEMGGMPMREAA-PQPVPIGALATALANAPPDQQRLMLGENLYPLVEQLER 178
Query: 584 DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLS 643
+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLR+ Q + S ++A+LS
Sbjct: 179 EQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQQLANLS 238
Query: 644 LNDNIVS 650
LND +VS
Sbjct: 239 LNDGVVS 245
>gi|340386042|ref|XP_003391517.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Amphimedon queenslandica]
Length = 393
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 126/256 (49%), Positives = 182/256 (71%), Gaps = 1/256 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN++ L+D F++ G V+S+ VCRDL T+RSLGY Y+ + +A RA D
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ P+ G+P IM+S RDP++R+S AG+IFIKNL++SID+KAL+DTFS FGNILSCKVA
Sbjct: 72 MNYEPIKGQPCYIMWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD GQS+G GFV FD +E+A AI+K+NG LLN+++V VG F+ +++R T + N
Sbjct: 132 TDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHTGFNQHYTN 191
Query: 221 -VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
V+VKN E T++ L F +FG I + VM+D +G SK FGFV+F+ + A+ +V+A+
Sbjct: 192 VVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFVSFESHEAASAAVQAV 251
Query: 280 NGKKFDDKEWYVGKAQ 295
+ + ++ Y +A
Sbjct: 252 HSSIVNGRQVYCSRAH 267
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 138/271 (50%), Gaps = 16/271 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L ++ L D FS G +LS V D + + S GY ++ F A+ A D
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + + ++ +R+ + ++R ++++KNL + L F FG I S
Sbjct: 72 MNYEPIKGQPCYI----MWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D +G+SK GFV+FD+ + A ++E +NG+ ++++ +VGK + +R
Sbjct: 128 CKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRS---HTG 184
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
F Q ++VKN + +D+ L F +FG+I + VM+D G+S+ GFV
Sbjct: 185 FNQHYTNV--------VFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFV 236
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+F + E AS A+ ++ +V + +Y + A
Sbjct: 237 SFESHEAASAAVQAVHSSIVNGRQVYCSRAH 267
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 20/194 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSVEA 278
++YV +L E DL F + G + S V RD K S + ++ F P DA R+ +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + Y+ +Q+ + SL+ + ++++KNL+ SI L
Sbjct: 72 MNYEPIKGQPCYIMWSQR------------DPSLRRS----RAGHIFIKNLERSIDHKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA-LA 397
+ FS FG I SCKV D NG S+G GFV F E A A+ ++NG+++ ++ ++V
Sbjct: 116 YDTFSAFGNILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFI 175
Query: 398 QRKEERRARLQFSQ 411
RK+ R+ F+Q
Sbjct: 176 PRKD--RSHTGFNQ 187
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 213/381 (55%), Gaps = 43/381 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V + L++LF+ +G VVSVRVCRD+ TRRSLGY YVN+ +A RA+D
Sbjct: 177 SLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAIDV 236
Query: 101 LNF--TPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L F PL KPIRIM+ DP+ R++ GNIFIKNLDKSIDNKAL+DTFSTFG +LSC
Sbjct: 237 LQFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTFSTFGKVLSC 296
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KT 216
K+ATD G S GY FV + + AK I K+NGMLLN ++V+VG F ++ERE+T + T
Sbjct: 297 KLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYVGEFRPRREREATGELST 356
Query: 217 RFNNVYVKNLSET-TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+F NVYVKNL E+ T +++ K+F +G ITS + + + + P + A S
Sbjct: 357 KFTNVYVKNLDESLCTTEEVTKLFAPYGNITSIFIPTETVQEQQPHHEDEHRAPSEEASS 416
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET-ADKFEGLNLYVKNLDDSIS 334
E +G Q +K AD+ +L+ S
Sbjct: 417 -------------------------EAGRQGGSSQEVKSAGADQSNA----APDLETSER 447
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+D K + + +V RG FV F T E+A+ A+ +NG + K LYV
Sbjct: 448 NDGAKAPENRAHAQSVVRVR------PRGFAFVNFETPEQAAAAVEALNGMELNGKTLYV 501
Query: 395 ALAQRKEERRA--RLQFSQMR 413
AQ+K ER A R Q Q+R
Sbjct: 502 GRAQKKAEREAMLRAQMEQLR 522
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 140/415 (33%), Positives = 223/415 (53%), Gaps = 50/415 (12%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +LD S+++ LYD F+ G+V+S ++ D SLGY +V+Y A+ A + ++
Sbjct: 269 IFIKNLDKSIDNKALYDTFSTFGKVLSCKLATD-DKGNSLGYAFVHYQDANVAKYVISKM 327
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSI-DNKALHDTFSTFGN 153
N LNG+ + + +R P + G N+++KNLD+S+ + + F+ +GN
Sbjct: 328 NGMLLNGQKVYV-GEFR-PRREREATGELSTKFTNVYVKNLDESLCTTEEVTKLFAPYGN 385
Query: 154 ILSCKVATDSLGQSRGYGFVQFDN-EESAKSAIDKLNGMLLNDK-----QVFVGPFLRKQ 207
I S + T+++ + + + + E A S + G K Q P L
Sbjct: 386 ITSIFIPTETVQEQQPHHEDEHRAPSEEASSEAGRQGGSSQEVKSAGADQSNAAPDLETS 445
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
ER A K N + +++ + + F FVNF+
Sbjct: 446 ERNDGA-KAPENRAHAQSVVRV---------------------------RPRGFAFVNFE 477
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
P+ AA +VEALNG + + K YVG+AQKK ERE L+ + EQ + K + +NL+VK
Sbjct: 478 TPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQKLQDVNLFVK 537
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NL D + +++L+E FS FGTITS ++MRD G+S+G GFVAFS +EA KA+TEMN ++V
Sbjct: 538 NLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKAVTEMNQRIV 597
Query: 388 VSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFY-GQGPP 441
KP+YVALAQRK++RRA+++ +Q + +M P PGL ++ G G P
Sbjct: 598 GQKPIYVALAQRKDQRRAQIE-AQRAAMMRAQMSFLP---PGLAASMYVPGTGMP 648
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 33/246 (13%)
Query: 120 PTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFV 173
P SG G ++++ +L + + L + FS+ G ++S +V D + + S GY +V
Sbjct: 163 PAASASGTGELPNVSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYV 222
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPF-----LRKQERESTADKTRF--NNVYVKNL 226
F N E A+ AID L Q + GP +R + S + R N+++KNL
Sbjct: 223 NFQNPEDAERAIDVL--------QFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNL 274
Query: 227 SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286
++ L F FG + S + D G S + FV++ D + A + +NG +
Sbjct: 275 DKSIDNKALYDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNG 334
Query: 287 KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI-SDDKLKELFSEF 345
++ YVG+ + + ERE + E + KF N+YVKNLD+S+ + +++ +LF+ +
Sbjct: 335 QKVYVGEFRPRRERE---------ATGELSTKF--TNVYVKNLDESLCTTEEVTKLFAPY 383
Query: 346 GTITSC 351
G ITS
Sbjct: 384 GNITSI 389
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 84/149 (56%), Gaps = 16/149 (10%)
Query: 505 GRIYRYPPGCNIPDV----PVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALAN 560
G R PPG + + P+ G +P +G M AA SQP+ LAN
Sbjct: 848 GGAMRAPPGGTMAGMVAMSPMTAGAGNTVPS-GAMGNMMIGSAA-SQPLTV----QMLAN 901
Query: 561 ASPEQQRTLLGENLYPLVDQL-----EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
A P+QQ+ +LGE LYPLV Q + + A K+TGMLLEMD +EVLHL+ESPEAL+ KV
Sbjct: 902 ADPKQQKQILGERLYPLVYQQLVREGKRELAPKITGMLLEMDNSEVLHLVESPEALQEKV 961
Query: 616 AEAMEVL-RNVAQQQATGPSPTDRVASLS 643
EA+EVL +++A QA T LS
Sbjct: 962 EEALEVLQQHLASLQAKAAQHTSAQQGLS 990
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 209/366 (57%), Gaps = 54/366 (14%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVG+L ++++ L + F G V SV+VCRD T +SLGY ++N+ + + A +
Sbjct: 39 TSLYVGELAPHIDEAMLKEHF---GNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFE 95
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN + ++G R+M S R+ T R SGAGNI +KNL ++DNK+L+DTFS +GN++SC+V
Sbjct: 96 NLNHSKIDGTTYRLMISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRV 155
Query: 160 ATDSLGQS-RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD---- 214
G S +GYGFV +D +A+ AI +NG +L K+V + K E+ES
Sbjct: 156 FNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESLLSHNDQ 215
Query: 215 -KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
RF NVYVKNLS TEDDL ++F G ++S V RD K K FGFVNF+ P+DA
Sbjct: 216 QHCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQHKPKGFGFVNFELPEDAE 275
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+V L+ K F + +
Sbjct: 276 RAVNELHDKDF--------------------------------------------FAEDV 291
Query: 334 SDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+D+ L F +GTITS K+M+D + G +G GFV FS+++EA++A+ EMNG+ + SKP+
Sbjct: 292 TDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVCFSSSDEANRAVAEMNGRFISSKPI 351
Query: 393 YVALAQ 398
YVALAQ
Sbjct: 352 YVALAQ 357
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV L+ E LK+ FG + S V RD+ +S + +NF P D + + E
Sbjct: 40 SLYVGELAPHIDEAMLKE---HFGNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFEN 96
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDK 337
LN K D + + S +ET + G N+ +KNL ++ +
Sbjct: 97 LNHSKIDGTTY-----------------RLMISERETTKRVSGAGNIILKNLHPNVDNKS 139
Query: 338 LKELFSEFGTITSCKVMRDPNGIS-RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L + FS +G + SC+V G S +G GFV + T A +A++ +NGKM+ K ++ +
Sbjct: 140 LYDTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASH 199
Query: 397 AQRKEERRARL 407
K E+ + L
Sbjct: 200 QVLKNEKESLL 210
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 187/540 (34%), Positives = 267/540 (49%), Gaps = 97/540 (17%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q + SLYVGDL VN+++L++LF+ +G V+SVRVCRD TR SLGYGYVN+N A +A
Sbjct: 75 QGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAE 134
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+ +LNF L+G+ IRIM RDP R+SG GNIFI L + L DTF FG IL
Sbjct: 135 AAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTFEQFGKIL 194
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFL-RKQERESTA 213
SCK D G+ RG+GFV F++ + A+ AI + NG D+++ V PF RKQ +
Sbjct: 195 SCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQE 254
Query: 214 DKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV----MRDADGKSKCFGFVNFDD 268
++T+ F NVYVK+L E++L K+F +G ITS A+ ++D + + +GFVNF D
Sbjct: 255 ERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNFAD 311
Query: 269 PDDAARSVEA----------LNGKKFDDK---EWYVGKAQKKYEREMELK------GK-- 307
+ A + VE ++G F++ E +V ++ E+E GK
Sbjct: 312 TEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLS 371
Query: 308 ----FEQSLKETADK-FEGLNLYVKNLDDSISDDKL------------------------ 338
F++ +ET DK GL ++ D IS KL
Sbjct: 372 GFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRRRLQERRR 431
Query: 339 -----------------------KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
++ F E G + S KVMRD G+SR GFV F+T EEA
Sbjct: 432 ELRQRGGNLFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEA 491
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLF 435
A+ + N + + +P+YVA ++ER+AR + Q M MYP PG+
Sbjct: 492 ESAIAKKNRQPLQDRPIYVAFHLTRQERQAR-KQQQHPQHPQQGMYMYPQY-PGM----- 544
Query: 436 YGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP 495
P+ PG+ Q ++ + P M P Q R G MQQ +P+P
Sbjct: 545 -----PMGAFGPGYYNPQMMM--VNPQMPRAMNFPAQAGNRGGPVGGPNRYMQQQNRPMP 597
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
+ S LA+ EQ+R LG+ LY V ++ + A K+TGMLL D +++LL S AL+
Sbjct: 654 VTSQLAHMDEEQRRRYLGDMLYHRVANIDKERAPKITGMLLAYDAGHLMNLLASDAALRE 713
Query: 614 KVAEAMEVL 622
+V A +L
Sbjct: 714 QVMLAQNIL 722
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 174/243 (71%), Gaps = 11/243 (4%)
Query: 9 QAPV-AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
QA V + P+P G+ +QF S LY GDL VN++ LY++FN +G V
Sbjct: 25 QATVDTTSGDPAPTVGGVP-------TQQFAS--LYAGDLAPDVNEAVLYEVFNGIGPVA 75
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRD TR+SLGY Y+N++ +A RALD LN++P+NG+P R+M+S+RDP +R+SGA
Sbjct: 76 SIRVCRDSVTRKSLGYAYINFHNVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGA 135
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GN+++KNLD++IDNKAL+DTFS FGNILSCKVA G+SRG+GFV F+++ESA++AI K
Sbjct: 136 GNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAK 195
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LNGM + +K V+V F + +R + K F NVY+K++ + TE+ +++ FG FG ITS
Sbjct: 196 LNGMQIGEKTVYVAQFKKTADRSDGSPKN-FTNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Query: 248 TAV 250
A+
Sbjct: 255 FAM 257
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 28/228 (12%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDK 187
+++ +L ++ L++ F+ G + S +V DS+ +S GY ++ F N A+ A+D
Sbjct: 49 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN +N + L R+ ++ NVYVKNL L F FG I S
Sbjct: 109 LNYSPINGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILS 164
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V DGKS+ FGFV+F+ + A ++ LNG + +K YV +
Sbjct: 165 CKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQ-------------- 210
Query: 308 FEQSLKETADKFEG-----LNLYVKNLDDSISDDKLKELFSEFGTITS 350
K+TAD+ +G N+Y+K++ S +++K++E F FG ITS
Sbjct: 211 ----FKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 19/189 (10%)
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARS 275
+F ++Y +L+ E L ++F G + S V RD+ KS + ++NF + DA R+
Sbjct: 46 QFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 105
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSIS 334
++ LN + + + S ++ A + G N+YVKNLD +I
Sbjct: 106 LDTLNYSPINGR-----------------PCRLMWSHRDPALRRSGAGNVYVKNLDRNID 148
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L + FS FG I SCKV P+G SRG GFV F + E A A+ ++NG + K +YV
Sbjct: 149 NKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYV 208
Query: 395 ALAQRKEER 403
A ++ +R
Sbjct: 209 AQFKKTADR 217
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++YV +LD ++++ LYD F+ G ++S +V +S G+G+V++ + A A+ +
Sbjct: 137 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESAEAAIAK 195
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGA----GNIFIKNLDKSIDNKALHDTFSTFGNILS 156
LN + K + + ++ R G+ N++IK++ S + + + F FG I S
Sbjct: 196 LNGMQIGEKTVYVA-QFKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Query: 157 CKVAT 161
+ T
Sbjct: 255 FAMQT 259
>gi|34015127|gb|AAQ56324.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
Length = 266
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/214 (62%), Positives = 162/214 (75%), Gaps = 14/214 (6%)
Query: 445 PQPGFGYQQQLVPGMRP------NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
P PGFG+QQ L+PGMRP N+ +PMVQ GQQ QRP GRR+GTG +QQ P+P+
Sbjct: 59 PMPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQ---PMPMGH 115
Query: 499 PRMLPRGRI--YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALAS 556
+MLPRG YRY G +PD GV GG++P PY++G MP DA + GALAS
Sbjct: 116 QQMLPRGSRGGYRYASGRGMPDNAFRGV-GGLVPSPYEMGRMPLSDAGAPPQVPIGALAS 174
Query: 557 ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 616
ALAN+ P+QQR +LGE+LYPLVDQLEHD AAKVTGMLLEMDQTEVLHL+ESP+ALKAKVA
Sbjct: 175 ALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKVA 234
Query: 617 EAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
EAMEVLRN QQQA +PTD++A+L+L+D +VS
Sbjct: 235 EAMEVLRNAQQQQAN--TPTDQLAALTLSDGVVS 266
>gi|218200922|gb|EEC83349.1| hypothetical protein OsI_28748 [Oryza sativa Indica Group]
Length = 252
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/214 (62%), Positives = 162/214 (75%), Gaps = 14/214 (6%)
Query: 445 PQPGFGYQQQLVPGMRP------NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
P PGFG+QQ L+PGMRP N+ +PMVQ GQQ QRP GRR+GTG +QQ P+P+
Sbjct: 45 PMPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQ---PMPMGH 101
Query: 499 PRMLPRGRI--YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALAS 556
+MLPRG YRY G +PD GV GG++P PY++G MP DA + GALAS
Sbjct: 102 QQMLPRGSRGGYRYASGRGMPDNAFRGV-GGLVPSPYEMGRMPLSDAGAPPQVPIGALAS 160
Query: 557 ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 616
ALAN+ P+QQR +LGE+LYPLVDQLEHD AAKVTGMLLEMDQTEVLHL+ESP+ALKAKVA
Sbjct: 161 ALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKVA 220
Query: 617 EAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
EAMEVLRN QQQA +PTD++A+L+L+D +VS
Sbjct: 221 EAMEVLRNAQQQQAN--TPTDQLAALTLSDGVVS 252
>gi|222640326|gb|EEE68458.1| hypothetical protein OsJ_26852 [Oryza sativa Japonica Group]
Length = 252
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/214 (62%), Positives = 162/214 (75%), Gaps = 14/214 (6%)
Query: 445 PQPGFGYQQQLVPGMRP------NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
P PGFG+QQ L+PGMRP N+ +PMVQ GQQ QRP GRR+GTG +QQ P+P+
Sbjct: 45 PMPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQ---PMPMGH 101
Query: 499 PRMLPRGRI--YRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALAS 556
+MLPRG YRY G +PD GV GG++P PY++G MP DA + GALAS
Sbjct: 102 QQMLPRGSRGGYRYASGRGMPDNAFRGV-GGLVPSPYEMGRMPLSDAGAPPQVPIGALAS 160
Query: 557 ALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 616
ALAN+ P+QQR +LGE+LYPLVDQLEHD AAKVTGMLLEMDQTEVLHL+ESP+ALKAKVA
Sbjct: 161 ALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKVA 220
Query: 617 EAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
EAMEVLRN QQQA +PTD++A+L+L+D +VS
Sbjct: 221 EAMEVLRNAQQQQAN--TPTDQLAALTLSDGVVS 252
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/206 (57%), Positives = 153/206 (74%), Gaps = 3/206 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGI 244
NVY+KN E ++ LK+ F ++G
Sbjct: 191 TNVYIKNFGEDMDDERLKETFSKYGC 216
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 16/221 (7%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGT 347
K + E N+Y+KN + + D++LKE FS++G
Sbjct: 186 KAK----------EFTNVYIKNFGEDMDDERLKETFSKYGC 216
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDK 337
+N K + +Q+ + SL+++ G+ N+++KNLD SI +
Sbjct: 72 MNFDVIKGKPIRIMWSQR------------DPSLRKS-----GVGNVFIKNLDKSIDNKA 114
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L + FS FG I SCKV+ D NG S+G FV F T + A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRF 173
Query: 398 QRKEERRARL 407
+ + ER A L
Sbjct: 174 KCRREREAEL 183
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 125/247 (50%), Positives = 176/247 (71%), Gaps = 14/247 (5%)
Query: 188 LNGMLLNDKQVFVGPFLRKQER-ESTADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLLNDK+VFVG FL + ER + ++ R F NVY+KN + E L+ +F ++G++
Sbjct: 1 VNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVV 60
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE-----WYVGKAQKKYER 300
S AVMRD DG S+ FGFV +D ++A +VEA+NG++ + YVG+AQKK ER
Sbjct: 61 KSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQER 120
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD---- 356
+ EL+G++EQ +E +F+G+NLYVKNLDD+++DD+L+E F+ +GTITS K+M D
Sbjct: 121 QQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECS 180
Query: 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQ-MR 413
SRG GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQR+E+R+A L Q+ Q M
Sbjct: 181 TGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQRMT 240
Query: 414 PPVGPRM 420
+G RM
Sbjct: 241 SSMGVRM 247
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 122/239 (51%), Gaps = 27/239 (11%)
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN K + + + R I+K G N++IKN D K L F +G +
Sbjct: 1 VNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVV 60
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ-----VFVGPFLRKQER 209
S V D G SRG+GFV +D+ E A++A++ +NG + ++VG +KQER
Sbjct: 61 KSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQER 120
Query: 210 ESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG- 256
+ RF N+YVKNL + T+D+L++ F +G ITS +M D +
Sbjct: 121 QQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECS 180
Query: 257 ---KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+S+ FGFV F P++A ++V +NG+ K YV AQ++ +R+ L ++ Q +
Sbjct: 181 TGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQRM 239
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD--LST-RRSLGYGYVNYNAA 91
++F +LYV +LD +V D +L + F G + S ++ D ST RS G+G+V +++
Sbjct: 137 QRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSP 196
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYR 118
EAT+A+ E+N + KP+ + + R
Sbjct: 197 EEATKAVTEMNGRIVGTKPLYVALAQR 223
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 243 bits (621), Expect = 2e-61, Method: Composition-based stats.
Identities = 120/203 (59%), Positives = 154/203 (75%), Gaps = 2/203 (0%)
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF P+ KPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FGNILS
Sbjct: 1 ALDTMNFDPIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILS 60
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-TADK 215
C+VATD S+GYGFV F+ EE+A +AI K+NGMLLN K+VFVG F+ ++ERE DK
Sbjct: 61 CRVATDEEANSKGYGFVHFETEEAANNAISKVNGMLLNGKKVFVGRFIPRKERERLLGDK 120
Query: 216 T-RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
RF NVY+KN + ++ L IF ++G +TS VM D +GK++ FGFV+F+DP+ A +
Sbjct: 121 ARRFTNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEK 180
Query: 275 SVEALNGKKFDDKEWYVGKAQKK 297
+VE LNGK K YVG+AQKK
Sbjct: 181 AVEELNGKDVGGKPLYVGRAQKK 203
Score = 128 bits (321), Expect = 1e-26, Method: Composition-based stats.
Identities = 73/193 (37%), Positives = 111/193 (57%), Gaps = 10/193 (5%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ + K+ NV++KNL ++ + F FG I S V D + SK +GFV+F+
Sbjct: 21 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFE 80
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ A ++ +NG + K+ +VG+ + ERE + L + A +F N+Y+K
Sbjct: 81 TEEAANNAISKVNGMLLNGKKVFVGRFIPRKERE--------RLLGDKARRFT--NVYIK 130
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
N D + D+KL +F ++G +TS KVM D NG +RG GFV+F E A KA+ E+NGK V
Sbjct: 131 NFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDV 190
Query: 388 VSKPLYVALAQRK 400
KPLYV AQ+K
Sbjct: 191 GGKPLYVGRAQKK 203
Score = 95.5 bits (236), Expect = 8e-17, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 96/172 (55%), Gaps = 7/172 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ +YD F+ G ++S RV D S GYG+V++ A A+ +
Sbjct: 33 NVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATD-EEANSKGYGFVHFETEEAANNAISK 91
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R R G N++IKN +D++ L F +G +
Sbjct: 92 VNGMLLNGKKVFVGRFIPRKERERLLGDKARRFTNVYIKNFGDELDDEKLVVIFDKYGKV 151
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
S KV D G++RG+GFV F++ E A+ A+++LNG + K ++VG +K
Sbjct: 152 TSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYVGRAQKK 203
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+++KNLD SI + + + FS FG I SC+V D S+G GFV F T E A+ A++++
Sbjct: 33 NVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISKV 92
Query: 383 NGKMVVSKPLYVA-LAQRKEERR 404
NG ++ K ++V RKE R
Sbjct: 93 NGMLLNGKKVFVGRFIPRKERER 115
Score = 44.7 bits (104), Expect = 0.14, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 31 VGD-ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
+GD AR+F T++Y+ + ++D +L +F++ G+V S +V D ++ G+G+V++
Sbjct: 117 LGDKARRF--TNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVD-ENGKNRGFGFVSFE 173
Query: 90 AAHEATRALDELNFTPLNGKPIRI 113
A +A++ELN + GKP+ +
Sbjct: 174 DPECAEKAVEELNGKDVGGKPLYV 197
>gi|326430719|gb|EGD76289.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 642
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 162/447 (36%), Positives = 232/447 (51%), Gaps = 83/447 (18%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q + SLYVGDL VN+++L++LF+ +G V+SVRVCRD TR SLGYGYVN+N A +A
Sbjct: 66 QGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAE 125
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+ +LNF L+G+ IRIM RDP R+SG GNIFI L + L DTF FG IL
Sbjct: 126 AAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTFEQFGKIL 185
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFL-RKQERESTA 213
SCK D G+ RG+GFV F++ + A+ AI + NG D+++ V PF RKQ +
Sbjct: 186 SCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQE 245
Query: 214 DKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV----MRDADGKSKCFGFVNFDD 268
++T+ F NVYVK+L E++L K+F +G ITS A+ ++D + + +GFVNF D
Sbjct: 246 ERTKNFTNVYVKSLRRGADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNFAD 302
Query: 269 PDDAARSVEA----------LNGKKFDDK---EWYVGKAQKKYEREMELK------GK-- 307
+ A + VE ++G F++ E +V ++ E+E GK
Sbjct: 303 TEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLS 362
Query: 308 ----FEQSLKETADK-FEGLNLYVKNLDDSISDDKL------------------------ 338
F++ +ET DK GL ++ D IS KL
Sbjct: 363 GFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRRRLQERRR 422
Query: 339 -----------------------KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
++ F E G + S KVMRD G+SR GFV F+T EEA
Sbjct: 423 ELRQRGGNLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEA 482
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEE 402
A+ + N + + +P+YVA ++E
Sbjct: 483 ESAIAKKNRQPLQDRPIYVAFHLTRQE 509
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GN+++KN ++++ + L F G+++S KV D G SR +GFV F E A+SAI K
Sbjct: 429 GNLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAK 488
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYV 223
N L D+ ++V L +QE + +V+V
Sbjct: 489 KNRQPLQDRPIYVAFHLTRQEAAAAPTAPTAGHVHV 524
>gi|326429915|gb|EGD75485.1| poly(A)-binding protein [Salpingoeca sp. ATCC 50818]
Length = 1688
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 166/467 (35%), Positives = 242/467 (51%), Gaps = 87/467 (18%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDL VN+++L++LF+ +G V+SVRVCRD T SLGYGYVN+N A +A A+
Sbjct: 248 TSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAEDAEAAMG 307
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LNF L+G+ IRIM RDP R+S NI + L + L DTF FG ILSCK
Sbjct: 308 QLNFHDLHGRHIRIMKVERDPKKRRSDPRNIVVTGLPADTTSVHLRDTFEQFGKILSCKA 367
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL-NDKQVFVGPFL-RKQERESTADKTR 217
D G+ RG+GFV F++ + A+ AI + NG D+++ V PF RKQ + ++T+
Sbjct: 368 VLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQEERTK 427
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV----MRDADGKSKCFGFVNFDDPDDA 272
F NVYVK+L E++L K+F +G ITS A+ ++D + + +GFVNF D + A
Sbjct: 428 NFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNFADTEAA 484
Query: 273 ARSVEA----------------LNGKKFDD----KEWYVGKAQKKYEREM---ELKG--K 307
+ VE GKK +D E G +++ ++ +L G
Sbjct: 485 QKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLSGFIL 544
Query: 308 FEQSLKETADK-FEGL--------------NLYV-------------------------- 326
F++ +ET DK GL LYV
Sbjct: 545 FKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQTKQERIRRLRRRLQERRRELRQ 604
Query: 327 -------KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
KN +++++++ L++ F E G + KVMRD G+SR GFV F+T EEA A+
Sbjct: 605 RGGNLFVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATREEAESAI 664
Query: 380 TEMNGKMVVSKPLYVALAQRKEER-RARLQFSQM---RPPVGPRMPM 422
+ N + + +P+YVA ++ER + + Q Q P PRMPM
Sbjct: 665 AKKNRQTLQDRPIYVAFHLTRQERCKQQPQHPQQGVYMYPQCPRMPM 711
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
+ S LA+ EQ+R LG+ LY V ++ + A K+TGMLL D +++LL S AL+
Sbjct: 1019 VTSQLAHMDEEQRRGYLGDMLYHRVAGIDKERAPKITGMLLAYDAGHLMNLLASDAALRE 1078
Query: 614 KVAEAMEVLRN-----VAQQQATGPS 634
+V A +L QQQ G S
Sbjct: 1079 QVVLAQNILAGNTGAPAKQQQKEGGS 1104
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
+ S LA+ EQ+R LG+ LY V + + A K+TGMLL D +++LL S AL+
Sbjct: 815 VTSQLAHMDEEQRRRYLGDMLYHRVASINKERAPKITGMLLAYDAGHLMNLLVSDAALRE 874
Query: 614 KVAEAMEVL 622
+V A +L
Sbjct: 875 QVVLARNIL 883
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS---GFVAFSTAEEASK 377
G +LYV +L +++ +L LFS G++ S +V RD I+ GS G+V F+ AE+A
Sbjct: 247 GTSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQ--ITHGSLGYGYVNFNKAEDAEA 304
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERR 404
A+ ++N + + + + +R ++R
Sbjct: 305 AMGQLNFHDLHGRHIRIMKVERDPKKR 331
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
+ S LA+ EQ+R LG+ L V ++ + A K+TGMLL D +++LL S AL+
Sbjct: 917 VTSQLAHMDEEQRRRYLGDMLCHRVASIDKERAPKITGMLLAYDAGHLMNLLVSDAALRE 976
Query: 614 KVAEAMEVL 622
+V A +L
Sbjct: 977 QVVLARNIL 985
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 193/313 (61%), Gaps = 28/313 (8%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+ RDP +R SG GNIF+KNL +D++ L F FG ILSCKV +D G+SRGYGFV
Sbjct: 1 MWQQRDPALRYSGNGNIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFV 60
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQ--------VFVGPFLRKQERESTADKTRFNNVYVKN 225
F ++ +AK+AI+ +NG DK+ ++V F+R+ R + A F NVY+K
Sbjct: 61 HFKDDTAAKNAIESMNG----DKEHADAAKAALYVANFIRRNARLA-ALVANFTNVYIKQ 115
Query: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285
L T +D ++K F +FG ITS A +D +G++ F F NF+ DDA +++EA + + +
Sbjct: 116 LLPTVNKDTIEKFFSKFGGITSAATCKDKNGRA--FAFCNFEKHDDAVKAIEAFHDQVIE 173
Query: 286 D-----KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
++ YV +AQ + ER + L+ K+ Q + G NLYV+N D S+ L
Sbjct: 174 GVTPPGEKLYVQRAQPRSERLIALRQKYMQC------QSLGNNLYVRNFDVEFSEKDLHV 227
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LF E+GTI SC+VM D NG SRG GFV+F A++A+ AL EMNG+M+ KPL V +AQR+
Sbjct: 228 LFEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRR 287
Query: 401 EER--RARLQFSQ 411
++R R+QF Q
Sbjct: 288 DQRFMMLRVQFQQ 300
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 151/309 (48%), Gaps = 25/309 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +L V+ +L +F + G+++S +V D RS GYG+V++ A A++
Sbjct: 16 NIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSD-EGGRSRGYGFVHFKDDTAAKNAIES 74
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTFG 152
+N + + Y IR++ N++IK L +++ + FS FG
Sbjct: 75 MNGDKEHADAAKAAL-YVANFIRRNARLAALVANFTNVYIKQLLPTVNKDTIEKFFSKFG 133
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-----DKQVFVGPFLRKQ 207
I S D G R + F F+ + A AI+ + ++ ++++V +
Sbjct: 134 GITSAATCKDKNG--RAFAFCNFEKHDDAVKAIEAFHDQVIEGVTPPGEKLYVQRAQPRS 191
Query: 208 ERESTADKTRF-------NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
ER A + ++ NN+YV+N +E DL +F E+G I S VM DA+G S+
Sbjct: 192 ER-LIALRQKYMQCQSLGNNLYVRNFDVEFSEKDLHVLFEEYGTIRSCRVMTDANGNSRG 250
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
FGFV+F++ D A ++ +NG+ + K V AQ++ +R M L+ +F+Q ++
Sbjct: 251 FGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRVQFQQRMQMMLRHMR 310
Query: 321 GLNLYVKNL 329
++L KN
Sbjct: 311 PMSLGGKNF 319
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ L +VN + F++ G + S C+D + R + + N+ +A +A++
Sbjct: 109 TNVYIKQLLPTVNKDTIEKFFSKFGGITSAATCKDKNGR---AFAFCNFEKHDDAVKAIE 165
Query: 100 ELNFTPLNGK--PIRIMY-------SYRDPTIR------KSGAGNIFIKNLDKSIDNKAL 144
+ + G P +Y S R +R +S N++++N D K L
Sbjct: 166 AFHDQVIEGVTPPGEKLYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDVEFSEKDL 225
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
H F +G I SC+V TD+ G SRG+GFV F+N + A +A+ ++NG +LN K + V
Sbjct: 226 HVLFEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQ 285
Query: 205 RKQER 209
R+ +R
Sbjct: 286 RRDQR 290
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q + +LYV + D+ ++ L+ LF + G + S RV D + S G+G+V++ A +A
Sbjct: 205 QSLGNNLYVRNFDVEFSEKDLHVLFEEYGTIRSCRVMTD-ANGNSRGFGFVSFENADQAN 263
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 264 AALREMNGRMLNGKPLIVNIAQR 286
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 115/202 (56%), Positives = 150/202 (74%), Gaps = 2/202 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ L++ F+ G V+S+RVCRDL RRSLGY YVN+ +A RALD
Sbjct: 13 ASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALD 72
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FGNILSCKV
Sbjct: 73 TMNFDMVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKV 132
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT--R 217
ATD S+GYGFV F+ EE+A +AI K+NGMLLN ++VFVG F+ + ERE + R
Sbjct: 133 ATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARR 192
Query: 218 FNNVYVKNLSETTTEDDLKKIF 239
F NVY+KN + ++ L+++
Sbjct: 193 FMNVYIKNFGDDLDDEKLREML 214
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 113/217 (52%), Gaps = 15/217 (6%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
++++ +L + L + FS+ G +LS +V D + + S GY +V F A+ A+
Sbjct: 12 VASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERAL 71
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D +N ++ + + + +R+ + K+ NV++KNL ++ + F FG I
Sbjct: 72 DTMNFDMVKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNI 127
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V D + SK +GFV+F+ + A +++ +NG + ++ +VGK + ERE +L
Sbjct: 128 LSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLG 187
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELF 342
K A +F +N+Y+KN D + D+KL+E+
Sbjct: 188 QK--------ARRF--MNVYIKNFGDDLDDEKLREML 214
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSVEAL 279
+YV +L TE L + F G + S V RD + S + +VNF P DA R+++ +
Sbjct: 15 LYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTM 74
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + +Q+ + SL+++ N+++KNLD SI + +
Sbjct: 75 NFDMVKGRPIRIMWSQR------------DPSLRKSGVG----NVFIKNLDKSIDNKAMY 118
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS FG I SCKV D S+G GFV F T E A+ A+ ++NG ++ + ++V
Sbjct: 119 DTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVP 178
Query: 400 KEERRARL 407
+ ER +L
Sbjct: 179 RSEREKQL 186
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 241 bits (615), Expect = 9e-61, Method: Composition-based stats.
Identities = 119/213 (55%), Positives = 155/213 (72%), Gaps = 3/213 (1%)
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD +N + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSC
Sbjct: 1 LDTMNSDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 60
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADK 215
KV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 61 KVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 119
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN E ++ LK+IF +FG S VM D G+SK FGFV+F+ +DA ++
Sbjct: 120 KEFTNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKA 179
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V+ +NGK+ + ++ YVG K ER+ ELK KF
Sbjct: 180 VDEMNGKEINGRQVYVGPCPXKVERQTELKRKF 212
Score = 136 bits (343), Expect = 3e-29, Method: Composition-based stats.
Identities = 74/201 (36%), Positives = 119/201 (59%), Gaps = 11/201 (5%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ + K+ N+++KNL ++ L F FG I S V+ D +G SK +GFV+F+
Sbjct: 20 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 78
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ A R++E +NG +D++ +VG+ + + ERE EL K + E N+Y+K
Sbjct: 79 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK----------EFTNVYIK 128
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
N + + D++LKE+F++FG S KVM D +G S+G GFV+F E+A KA+ EMNGK +
Sbjct: 129 NFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEI 188
Query: 388 VSKPLYVALAQRKEERRARLQ 408
+ +YV K ER+ L+
Sbjct: 189 NGRQVYVGPCPXKVERQTELK 209
Score = 117 bits (292), Expect = 2e-23, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 107/177 (60%), Gaps = 8/177 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D S GYG+V++ A RA+++
Sbjct: 32 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEK 89
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + F+ FG
Sbjct: 90 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEDMDDERLKEIFNKFGAF 149
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
LS KV TD G+S+G+GFV F+ E A+ A+D++NG +N +QV+VGP K ER++
Sbjct: 150 LSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYVGPCPXKVERQT 206
Score = 53.1 bits (126), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L ++FN+ G +SV+V D + RS G+G+V++ +
Sbjct: 119 AKEF--TNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTD-DSGRSKGFGFVSFEKHED 175
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+DE+N +NG+ + +
Sbjct: 176 AQKAVDEMNGKEINGRQVYV 195
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 156/417 (37%), Positives = 235/417 (56%), Gaps = 17/417 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S++VG LD + + +LYD F ++G V SVRVC D +T++SLGYGYVN+ +A +ALD+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+ L + +RI RDP+ R+SG NI +K L KS+D AL + FS FG + + +A
Sbjct: 69 AG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G+SRGY + F+ EESA A+ +++GM + D Q V + Q R+ + F N
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEM-DGQAIVVERYQAQHRDELLKQ--FTN 184
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD--ADGKSKCFGFVNFDDPDDAARSVEA 278
+YVKNL T++ L+ F ++G ++S V RD A G+V F +DAAR+VE
Sbjct: 185 LYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHEDAARAVEE 243
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDK 337
LNGK+ + + ++ E + E+ +E A + NLYVK DD+++ ++
Sbjct: 244 LNGKECEISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSER 303
Query: 338 LKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KPLYVA 395
L+ELF +G S VM D G+SR GFV+ AS+A+ E+NG +S +PL+V
Sbjct: 304 LEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFVT 363
Query: 396 LAQRKEERRARL-----QFSQMRPPV-GPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 446
A RK+ RR L QF + P+ GP M PP+ +G Q+F P + P+
Sbjct: 364 YALRKDARRQNLEERSKQFRVRQNPMGGPGMGAMPPIG-FMGPQMFNNVNMPFMNPR 419
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNYNAAHE 93
+QF T+LYV +LD +V D +L F + G+V S +V RDL +S G GYV + +
Sbjct: 180 KQF--TNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHED 236
Query: 94 ATRALDELNFTPLN----GKPIRI-------------MYSYRDPTIRKSGAGNIFIKNLD 136
A RA++ELN G P+ + R+ + S N+++K D
Sbjct: 237 AARAVEELNGKECEISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFD 296
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG-MLLN 194
++ ++ L + F +G +S V D G SR +GFV ++ +A AI +LNG L+
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLS 356
Query: 195 DKQVFVGPFLRKQER 209
+ +FV LRK R
Sbjct: 357 PRPLFVTYALRKDAR 371
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 52/69 (75%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
LA+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD +E+L++L+SP L +
Sbjct: 511 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILNMLDSPTMLDS 570
Query: 614 KVAEAMEVL 622
K+AEA +VL
Sbjct: 571 KIAEAQDVL 579
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 158/422 (37%), Positives = 234/422 (55%), Gaps = 27/422 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S++VG LD + + +LYD F ++G V SVRVC D +T++SLGYGYVN+ +A +ALD+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+ L + +RI RDP+ R+SG NI +K L KS+D AL + FS FG + + +A
Sbjct: 69 AG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G+SRGY + F+ EESA A+ +++GM + D Q V + Q R+ + F N
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEM-DGQAIVVERYQAQHRDELLKQ--FTN 184
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD--ADGKSKCFGFVNFDDPDDAARSVEA 278
+YVKNL T++ L+ F ++G ++S V RD A G+V F +DAAR+VE
Sbjct: 185 LYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHEDAARAVEE 243
Query: 279 LNGKKFDDKEWYVGKA------QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
LNG KE + KA + RE + + Q + + NLYVK DD+
Sbjct: 244 LNG-----KECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDT 298
Query: 333 ISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS-K 390
++ ++L+ELF +G S VM D G+SR GFV+ AS+A+ E+NG +S +
Sbjct: 299 VTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPR 358
Query: 391 PLYVALAQRKEERRARL-----QFSQMRPPV-GPRMPMYPPVAPGLGQQLFYGQGPPIIP 444
PL+V A RK+ RR L QF + P+ GP M PP+ +G Q+F P +
Sbjct: 359 PLFVTYALRKDARRQNLEERSKQFRVRQNPMGGPGMGAMPPIG-FMGPQMFNNVNMPFMN 417
Query: 445 PQ 446
P+
Sbjct: 418 PR 419
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNYNAAHE 93
+QF T+LYV +LD +V D +L F + G+V S +V RDL +S G GYV + +
Sbjct: 180 KQF--TNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHED 236
Query: 94 ATRALDELNFTPLN----GKPIRI-------------MYSYRDPTIRKSGAGNIFIKNLD 136
A RA++ELN G P+ + R+ + S N+++K D
Sbjct: 237 AARAVEELNGKECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFD 296
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG-MLLN 194
++ ++ L + F +G +S V D G SR +GFV ++ +A AI +LNG L+
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLS 356
Query: 195 DKQVFVGPFLRKQER 209
+ +FV LRK R
Sbjct: 357 PRPLFVTYALRKDAR 371
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 52/69 (75%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
LA+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD +E+L++L+SP L +
Sbjct: 520 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILNMLDSPTMLDS 579
Query: 614 KVAEAMEVL 622
K+AEA +VL
Sbjct: 580 KIAEAQDVL 588
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 234/421 (55%), Gaps = 25/421 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S++VG LD + + +LYD F ++G V SVRVC D +T++SLGYGYVN+ +A +ALD+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+ L + +RI RDP+ R+SG NI +K L KS+D AL + FS FG + + +A
Sbjct: 69 AG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G+SRGY + F+ EESA A+ +++GM + D Q V + Q R+ + F N
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEM-DGQAIVVERYQAQHRDELLKQ--FTN 184
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEAL 279
+YVKNL T++ L+ F ++G ++S V +S+ G+V F ++AAR+VE L
Sbjct: 185 LYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAAQSEAGLGYVAFQKHENAARAVEEL 244
Query: 280 NGKKFDDKEWYVGKA------QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
NG KE + KA + RE + + Q + + NLYVK DD++
Sbjct: 245 NG-----KECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTV 299
Query: 334 SDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KP 391
+ ++L+ELF +G S VM D G+SR GFV+ AS+A+ E+NG +S +P
Sbjct: 300 TSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRP 359
Query: 392 LYVALAQRKEERRARL-----QFSQMRPPV-GPRMPMYPPVAPGLGQQLFYGQGPPIIPP 445
L+V A RK+ RR L QF + P+ GP M PP+ +G Q+F P + P
Sbjct: 360 LFVTYALRKDARRQNLEERSKQFRVRQNPMGGPGMGAMPPIG-FMGPQMFNNVNMPFMNP 418
Query: 446 Q 446
+
Sbjct: 419 R 419
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNYNAAHE 93
+QF T+LYV +LD +V D +L F + G+V S +V RDL +S G GYV +
Sbjct: 180 KQF--TNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAAQSEAGLGYVAFQKHEN 236
Query: 94 ATRALDELNFTPLN----GKPIRI-------------MYSYRDPTIRKSGAGNIFIKNLD 136
A RA++ELN G P+ + R+ + S N+++K D
Sbjct: 237 AARAVEELNGKECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFD 296
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG-MLLN 194
++ ++ L + F +G +S V D G SR +GFV ++ +A AI +LNG L+
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLS 356
Query: 195 DKQVFVGPFLRKQER 209
+ +FV LRK R
Sbjct: 357 PRPLFVTYALRKDAR 371
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
LA+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD E+L++L+SP L +
Sbjct: 520 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNAEILNMLDSPTMLDS 579
Query: 614 KVAEAMEVL 622
K+AEA +VL
Sbjct: 580 KIAEAQDVL 588
>gi|52221255|gb|AAU29548.1| poly(A)-binding protein [Crithidia fasciculata]
Length = 564
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 152/405 (37%), Positives = 233/405 (57%), Gaps = 15/405 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S++VG LD +N+ +LYD F ++G V SVRVC D +T++SLGYGYVN+ +A +ALD+
Sbjct: 9 SIWVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALDQ 68
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
L + +RI RDP+ R+SG NI +K L KS+D AL + F +G + + +A
Sbjct: 69 AG-AKLGTRFLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTFALKEMFGKYGRLTAIGLA 127
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G+SRGY + F+ EESA A+ +++GM + D Q V + Q R+ + F N
Sbjct: 128 CDERGESRGYARISFEREESAVDAVKEMDGMEM-DGQAIVVERYQAQHRDEMLKQ--FTN 184
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEAL 279
+YVKNL T T+ L+ F ++G ++S V D +S+ FG+V F+ +DAA++VE L
Sbjct: 185 LYVKNLEPTVTDSKLRAFFAKYGEVSSAKVRDLGDAQSEVGFGYVAFEKHEDAAKAVEEL 244
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDKL 338
NGK+ + + ++ E + E+ +E A + NLYVK DD+++ ++L
Sbjct: 245 NGKECEIAKAGAPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERL 304
Query: 339 KELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVS-KPLYVAL 396
+ELF +G S VM D + G+SR GFV+ AS A+ ++NG +S +PL+V
Sbjct: 305 EELFQRYGETVSVTVMTDKDTGMSRCFGFVSMKDQGAASHAIQDLNGSTFLSPRPLFVTY 364
Query: 397 AQRKEERRARL-----QFSQMRPPV-GPRMPMYPPVAPGLGQQLF 435
A RK+ RR L QF + P+ GP M PP+ +G Q+F
Sbjct: 365 ALRKDARRQNLEERSKQFRMRQNPMNGPNMGGMPPMG-FMGPQMF 408
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNYNAAHE 93
+QF T+LYV +L+ +V DS+L F + G+V S +V RDL +S +G+GYV + +
Sbjct: 180 KQF--TNLYVKNLEPTVTDSKLRAFFAKYGEVSSAKV-RDLGDAQSEVGFGYVAFEKHED 236
Query: 94 ATRALDELNFTPLN----GKPIRI-------------MYSYRDPTIRKSGAGNIFIKNLD 136
A +A++ELN G P+ + R+ + S N+++K D
Sbjct: 237 AAKAVEELNGKECEIAKAGAPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFD 296
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNG-MLLN 194
++ ++ L + F +G +S V TD G SR +GFV ++ +A AI LNG L+
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMTDKDTGMSRCFGFVSMKDQGAASHAIQDLNGSTFLS 356
Query: 195 DKQVFVGPFLRKQER 209
+ +FV LRK R
Sbjct: 357 PRPLFVTYALRKDAR 371
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 159/229 (69%), Gaps = 3/229 (1%)
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+ T SLGY YV++ + RALD +NF + GKP+RIM+S DP++ KS NIFIKN
Sbjct: 1 MITCHSLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRIMWSQHDPSLHKSEVSNIFIKN 60
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
L KSIDNKAL+DTF FGNILSCKV D G S+GYGFV F+ +E+ + AI+K++GMLLN
Sbjct: 61 LGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGMLLN 119
Query: 195 DKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D +VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG VM
Sbjct: 120 DFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMT 179
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
D GKSK FGFV+F+ +DA ++V +NGK+ + K+ Y+G+AQKK E++
Sbjct: 180 DESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQ 228
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 15/240 (6%)
Query: 166 QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKN 225
S GY +V F + A+D +N ++ K V + + + + K+ +N+++KN
Sbjct: 5 HSLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRI----MWSQHDPSLHKSEVSNIFIKN 60
Query: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285
L ++ L F FG I S V+ D +G SK +GFV+F+ + R++E ++G +
Sbjct: 61 LGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGMLLN 119
Query: 286 DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345
D + +VG+ + + ERE EL + A +F N+Y+KN + + D+ LK+LF +F
Sbjct: 120 DFKVFVGQFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDEHLKDLFGKF 169
Query: 346 GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
G KVM D +G S+G GFV+F E+A KA+ EMNGK + K +Y+ AQ+K E++
Sbjct: 170 GPALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQT 229
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 103/178 (57%), Gaps = 8/178 (4%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+++++ +L S+++ LYD F G ++S +V D + S GYG+V++ RA++
Sbjct: 54 SNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG--SKGYGFVHFETQEAVERAIE 111
Query: 100 ELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGN 153
+++ LN + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 112 KMSGMLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGP 171
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
L KV TD G+S+G+GFV F+ E A+ A++++NG LN KQ+++G +K E+++
Sbjct: 172 ALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQT 229
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 25/151 (16%)
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETAD--- 317
+ +V+F P D R+++ +N FD +KGK + + D
Sbjct: 9 YTYVDFQKPTDMERALDTMN---FD-----------------VIKGKPVRIMWSQHDPSL 48
Query: 318 -KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
K E N+++KNL SI + L + F FG I SCKV+ D NG S+G GFV F T E
Sbjct: 49 HKSEVSNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVE 107
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARL 407
+A+ +M+G ++ ++V + ++ER A L
Sbjct: 108 RAIEKMSGMLLNDFKVFVGQFKSRKEREAEL 138
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D L DLF + G + V+V D S +S G+G+V++ +
Sbjct: 142 AKEF--TNVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMTDESG-KSKGFGFVSFERHED 198
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A++E+N LNGK I I
Sbjct: 199 AQKAVNEMNGKELNGKQIYI 218
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/276 (43%), Positives = 173/276 (62%), Gaps = 31/276 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +R+SG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++V
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKV--------------------R 169
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
+ Y +L+ + F VM ++ SK FGFV F P++A ++V +
Sbjct: 170 SDYPWSLASLCPATLISSCF---------QVMTESS-HSKGFGFVCFSSPEEATKAVTEM 219
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
NG+ K YV AQ+K ER+ L ++ + L +
Sbjct: 220 NGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRS 255
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 151/514 (29%), Positives = 235/514 (45%), Gaps = 82/514 (15%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS +V D + +S GY ++ F A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ + + + R+ ++ N+++KNL + L F FG I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ V+ + G S+ FGFV+F+ + A +++ +NG +D++ ++
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRK---------------VRSD 171
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
+ SL S+ L I+SC + + S+G GFV
Sbjct: 172 YPWSLA------------------SLCPATL---------ISSCFQVMTESSHSKGFGFV 204
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA--------RLQFSQMRPPVGPR 419
FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A RL S + P
Sbjct: 205 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQPT 264
Query: 420 MPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVP----MVQPGQQNQ 475
+ P V Q ++Y I P QP + Q P+ P +VQP
Sbjct: 265 SYLLPAVHQSTTQTMYYSSA-SIAPMQPDPRWTAQ---PHGPSSTCPPAASVVQPLSTAP 320
Query: 476 RPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYP--PGCNIPDVPVAGVPGGMLPGPY 533
P S QA +P Q R++ G P G IP P+ G +
Sbjct: 321 HPCIHLSSA---SQASSQVPHTQ-RVVNIGTQTTGPGGEGSCIPGQPLLAHRGS--SAVH 374
Query: 534 DIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAA----KV 589
G+ +++ P S L A +Q+ ++GE LY L+ HD A K+
Sbjct: 375 SAHGV--QESTVYVPGHQPLTVSMLDAAPLHEQKQMIGERLYSLI----HDACAPLTGKI 428
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
TGMLLEMD E+L LLESPE+L AK+ EA+ VL+
Sbjct: 429 TGMLLEMDNLELLLLLESPESLHAKIEEAVAVLK 462
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 26/175 (14%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSV 276
+++YV +L TE L ++F G I S V RD A +S + ++NF P DA R++
Sbjct: 10 LSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKG---KFEQSLKETADKFEGL-NLYVKNLDDS 332
+ +N EM +KG + S ++ + G+ N+++KNL++S
Sbjct: 70 DTMN-------------------FEM-IKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENS 109
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
I + L + FS FG+I S KV+ + +G SRG GFV F T E A KA+ MNG ++
Sbjct: 110 IDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL 163
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/196 (58%), Positives = 145/196 (73%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLD SID+KAL+DTFS FGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 122 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 218 FNNVYVKNLSETTTED 233
F NVY+KN E ++
Sbjct: 181 FTNVYIKNFGEEVDDE 196
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 20/190 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RD +S + +VNF P DA R+++
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDK 337
+N K + +Q+ + SL+++ G+ N+++KNLD+SI D
Sbjct: 63 MNFDVIKGKPIRIMWSQR------------DPSLRKS-----GVGNVFIKNLDNSIDDKA 105
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L + FS FG I SCKV+ D NG S+G FV F T E A KA+ +MNG ++ + ++V
Sbjct: 106 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 164
Query: 398 QRKEERRARL 407
+ ++ER A L
Sbjct: 165 KSRKEREAEL 174
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 16/210 (7%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL + + L F FG I
Sbjct: 62 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ + A +++E +NG +D++ +VG+ + + ERE EL
Sbjct: 118 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 176
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDD 336
K + E N+Y+KN + + D+
Sbjct: 177 KAK----------EFTNVYIKNFGEEVDDE 196
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 217/380 (57%), Gaps = 24/380 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S++VG LD + + +LYD F ++G V SVRVC D +T++SLGYGYVN+ +A +ALD+
Sbjct: 9 SIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
T L + +RI RDP+ R+SG NI +K L K++D AL + FS FG + + +A
Sbjct: 69 AG-TKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSKFGRLTAIGLA 127
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G+SRGY + F+ EESA A+ +++GM + D Q V + Q R+ + F N
Sbjct: 128 CDEKGESRGYARISFEREESAVEAVKEMDGMEM-DGQAIVVERYQAQHRDELLKQ--FTN 184
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSKC-FGFVNFDDPDDAARSVEA 278
+YVKNL T++ L+ F +G ++S V RD G +S+ G+V F+ +DAAR+VE
Sbjct: 185 LYVKNLDPAVTDEKLRAFFARYGAVSSAKV-RDLGGVQSEVGLGYVAFEKHEDAARAVEE 243
Query: 279 LNGKKFDDKEWYVGKAQKKYE--------REMELKGKFEQSLKETADKFEGLNLYVKNLD 330
LNG KE + KA+ + + + + + K+ NLYVK D
Sbjct: 244 LNG-----KECEIAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYP--NLYVKGFD 296
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D+++ ++L+ELF +G S VM D G+SR GFV+ AS+A+ E+NG +
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELNGSTFLC 356
Query: 390 -KPLYVALAQRKEERRARLQ 408
+PL+V A RK+ RR L+
Sbjct: 357 PRPLFVTYALRKDARRQNLE 376
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 33/200 (16%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNYNAAHE 93
+QF T+LYV +LD +V D +L F + G V S +V RDL +S +G GYV + +
Sbjct: 180 KQF--TNLYVKNLDPAVTDEKLRAFFARYGAVSSAKV-RDLGGVQSEVGLGYVAFEKHED 236
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRK----------------------SGAGNIF 131
A RA++E LNGK I + + + S N++
Sbjct: 237 AARAVEE-----LNGKECEIAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYPNLY 291
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
+K D ++ ++ L + F +G +S V D G SR +GFV ++ +A AI +LNG
Sbjct: 292 VKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELNG 351
Query: 191 -MLLNDKQVFVGPFLRKQER 209
L + +FV LRK R
Sbjct: 352 STFLCPRPLFVTYALRKDAR 371
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
LA+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD +E+L +L+SP L +
Sbjct: 505 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILSMLDSPVMLDS 564
Query: 614 KVAEAMEVL 622
K+AEA +VL
Sbjct: 565 KIAEAQDVL 573
>gi|413918856|gb|AFW58788.1| hypothetical protein ZEAMMB73_448418 [Zea mays]
Length = 212
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/212 (64%), Positives = 159/212 (75%), Gaps = 12/212 (5%)
Query: 446 QPGFGYQQQLVPGMRP------NYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP 499
QPGF +QQQLVPGMRP NY+VP+VQ GQQ RPG RR G G Q P Q
Sbjct: 6 QPGFAFQQQLVPGMRPGGPHMPNYYVPVVQQGQQGPRPGIRR-GAGAQGQQPVPP--FQQ 62
Query: 500 RMLPRGRIYRYPPGCNIPDVP-VAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASAL 558
++LPRGR+YRYP G N+P+ P + GV GGM+ YD+GG P RDAA S Q G L SAL
Sbjct: 63 QILPRGRMYRYPTGRNMPEAPAMPGVAGGMIQA-YDMGGFPVRDAALSPAAQIGTLTSAL 121
Query: 559 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
ANA+PEQQRT+LGENLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESP+ALK+KVAEA
Sbjct: 122 ANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLHLLESPDALKSKVAEA 181
Query: 619 MEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
M+VLRNVA QQ PT ++A+LSL + I+S
Sbjct: 182 MDVLRNVAHQQNPN-LPTSQLAALSLTEGIMS 212
>gi|147835778|emb|CAN72942.1| hypothetical protein VITISV_011270 [Vitis vinifera]
Length = 185
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/157 (75%), Positives = 127/157 (80%), Gaps = 11/157 (7%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFN 61
AQVQVQPQ P PA N A GG QFV+TSLYVGDL+L+VND QLYDLFN
Sbjct: 3 AQVQVQPQGP-------GPAPNSAAGAGG----NQFVTTSLYVGDLELNVNDPQLYDLFN 51
Query: 62 QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPT 121
QMG VVSVRVCRDLSTRRSLGYGYVNY+ +A RALD LNFTPLNGKP+RIMYS+ DP+
Sbjct: 52 QMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPLRIMYSHCDPS 111
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
IRKSG GNIFIKNLDK ID+KALHDTFS FGNILSCK
Sbjct: 112 IRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCK 148
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L + L +F + G + S V RD + +S +G+VN+ +P DAAR+++ L
Sbjct: 32 LYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 91
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + K + + + S++++ N+++KNLD I L
Sbjct: 92 NFTPLNGKPLRI------------MYSHCDPSIRKSGTG----NIFIKNLDKGIDHKALH 135
Query: 340 ELFSEFGTITSCK 352
+ FS FG I SCK
Sbjct: 136 DTFSAFGNILSCK 148
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKL 188
+++ +L+ ++++ L+D F+ G ++S +V D S +S GYG+V + N + A A+D L
Sbjct: 32 LYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 91
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N LN K + + + + K+ N+++KNL + L F FG I S
Sbjct: 92 NFTPLNGKPLRI----MYSHCDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSC 147
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEE 374
++F +LYV +L+ +++D +L +LF++ G + S +V RD S G G+V +S ++
Sbjct: 24 GNQFVTTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQD 83
Query: 375 ASKALTEMNGKMVVSKPLYVALAQ 398
A++AL +N + KPL + +
Sbjct: 84 AARALDVLNFTPLNGKPLRIMYSH 107
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/172 (62%), Positives = 137/172 (79%), Gaps = 1/172 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 72 MNFDVIKGKPVRIMWSQR------------DPSLRKSGVG----NIFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 399 RKEERRARL 407
++ER A L
Sbjct: 175 SRKEREAEL 183
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 6/181 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K V + +R+ + K+ N+++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 307 K 307
+
Sbjct: 186 R 186
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/172 (62%), Positives = 137/172 (79%), Gaps = 1/172 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 76 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 135
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 136 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 186
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + +VNF P DA R+++
Sbjct: 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 77 MNFDVIKGKPVRIMWSQR------------DPSLRKSGVG----NIFIKNLDKSIDNKAL 120
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG ++ + ++V +
Sbjct: 121 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179
Query: 399 RKEERRARL 407
++ER A L
Sbjct: 180 SRKEREAEL 188
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 101/184 (54%), Gaps = 6/184 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS +V D + + S GY +V F A+ A+D
Sbjct: 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K V + +R+ + K+ N+++KNL ++ L F FG I
Sbjct: 76 TMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 131
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 132 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 190
Query: 307 KFEQ 310
+ ++
Sbjct: 191 RAKE 194
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 146/188 (77%), Gaps = 2/188 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVK 224
+ N+YVK
Sbjct: 217 HYTNLYVK 224
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAK 182
++ + ++++ +L+ S+ L+D FS G++ S +V D++ + S GY +V F++ E+ +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI++LN + + + +R+ + K N+++KNL L F F
Sbjct: 94 KAIEQLNYTPIKGRLCRI----MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVF 149
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G I S+ + D +GKSK FGFV+F++ A +++ALNG + +E YV + ER+
Sbjct: 150 GDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 303 ELKGKFEQSLKETADKFEGLNLYVK 327
+ L+ET + NLYVK
Sbjct: 210 Q--------LEETKAHY--TNLYVK 224
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDD 268
ES + + ++YV +L + +E L IF G ++S V RDA K+ + +VNF+D
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+ +++E LN + + +Q+ + SL++ N+++KN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQR------------DPSLRKKGSG----NIFIKN 132
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
L I + L + FS FG I S K+ D NG S+G GFV F A +A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 389 SKPLYVALAQRKEERRARLQ 408
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 19/379 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S S++VG LD ++N+ +LYD F ++G V SVRVC D T++SLGYGYVN+ +A +AL
Sbjct: 8 SPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKAL 67
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D+ L K IRI RDP+ R+SG NI +K L ++D AL + FS +G + +
Sbjct: 68 DQAGVK-LGSKHIRIARIQRDPSKRRSGVTNIVVKKLPPTVDTYALKEMFSKYGRLTAIG 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+AT+ G+SRGY + ++ EESA A+ +NGM ++D + V R Q +
Sbjct: 127 LATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITVE---RYQPHHREEQLKLY 183
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSVE 277
N+YVKNL + ++ LK++F +G +TS V RD GK S F +V + + A ++VE
Sbjct: 184 TNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKV-RDLGGKMSVGFAYVAYATHEAAVKAVE 242
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL------NLYVKNLDD 331
L DDKE + K K + Q +E + NLYVKN DD
Sbjct: 243 EL-----DDKENPLAKEGMKLSVCRFRSREERQRERERLRRERQQLYSKYPNLYVKNFDD 297
Query: 332 SISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVS- 389
+++ ++LKELF FG S VM D +SR GFV+F AS+A+ E++G +
Sbjct: 298 TVTSERLKELFERFGETVSVSVMVDKATKVSRCFGFVSFKEQNSASRAIQELHGSTALGP 357
Query: 390 KPLYVALAQRKEERRARLQ 408
+PL+V A RK+ RR L+
Sbjct: 358 RPLFVTYALRKDARRQTLE 376
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
L++ LAN +PEQQ+ +LGE LY + ++ AAKVTGMLLEMD +E+L+LL++P L
Sbjct: 474 LSTMLANLTPEQQKNVLGERLYNHIVRVNPSVAAKVTGMLLEMDNSEILNLLDTPGLLDT 533
Query: 614 KVAEAMEVL 622
KV EA+EVL
Sbjct: 534 KVQEALEVL 542
>gi|392355792|ref|XP_228576.4| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 456
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 132/175 (75%), Gaps = 1/175 (0%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL V +S LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 255 FPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKR 314
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ +NF +NG+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 315 ALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 374
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
CKVA D G +GYGFV F +ESA+ AID LNGM LN +++FVG F +ERE+
Sbjct: 375 CKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREA 428
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 259 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 318
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++N + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 319 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 374
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ALNG + ++ +VG+ + ERE E
Sbjct: 375 CKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAW 433
Query: 308 FEQS 311
QS
Sbjct: 434 ARQS 437
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 259 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 318
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 319 MNFDVINGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 362
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ +NG + + ++V +
Sbjct: 363 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 421
Query: 399 RKEERRA 405
+ER A
Sbjct: 422 SHKEREA 428
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 167/415 (40%), Positives = 223/415 (53%), Gaps = 70/415 (16%)
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
M D GKS+ FGFV+F+ +DA + A NG F + W QKK ER+ ELK KFEQ
Sbjct: 1 MTDDSGKSRGFGFVSFERHEDAQK---ADNG--FLKENWI----QKKVERQAELKRKFEQ 51
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS
Sbjct: 52 MKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFS 110
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGL 430
+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L M+ R P + P
Sbjct: 111 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP-- 168
Query: 431 GQQLFYGQGPP------IIPPQ-------PGFGYQQQLVP-------GMRPNYFVPMVQP 470
Y PP IP P G QL P G+RP +F
Sbjct: 169 -----YQPAPPSGYFMTAIPQTQNRGAYYPAAGQMAQLRPSPRWPTQGVRPQHF------ 217
Query: 471 GQQNQRPGGRRSGTGP-MQQAQQPIPLMQPRMLPRGRIYRYPPG----CNIPDV---PVA 522
QN + R S P M + +P + PRM R+ G P V PV
Sbjct: 218 --QNMQSAMRSSAPRPQMFGSMRPSSQL-PRMTSSQRVATQAMGPRAATTAPSVTANPVR 274
Query: 523 GVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLE 582
GV Y GG +P+ T S LA A +Q+ +LGE L+PL+ +
Sbjct: 275 GVSQ----YKYATGG--------QEPLTT----SMLAAAPLHEQKQMLGERLFPLIQAMH 318
Query: 583 HDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 637
A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ ++A S T+
Sbjct: 319 LSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSVTN 373
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 10/158 (6%)
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND---KQVFVGPFLRKQERESTADK-T 216
TD G+SRG+GFV F+ E A+ A NG L + K+V L+++ + D+ T
Sbjct: 2 TDDSGKSRGFGFVSFERHEDAQKAD---NGFLKENWIQKKVERQAELKRKFEQMKQDRMT 58
Query: 217 RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FGFV F P++A +
Sbjct: 59 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRSKGFGFVCFSSPEEATK 117
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 118 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 155
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 15/157 (9%)
Query: 79 RSLGYGYVNYNAAHEATRA----LDELNFTPLNGKPIRIMYSY----RDPTIRKSGAGNI 130
+S G+G+V++ +A +A L E + + + +D R G N+
Sbjct: 7 KSRGFGFVSFERHEDAQKADNGFLKENWIQKKVERQAELKRKFEQMKQDRMTRYQGV-NL 65
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG
Sbjct: 66 YVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRSKGFGFVCFSSPEEATKAVTEMNG 124
Query: 191 MLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++ K ++V RK+ER++ N Y++ ++
Sbjct: 125 RIVATKPLYVALAQRKEERQA-----HLTNQYMQRMA 156
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 59 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--LEGGRSKGFGFVCFSSPEEAT 116
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 117 KAVTEMNGRIVATKPLYVALAQR 139
>gi|344281910|ref|XP_003412719.1| PREDICTED: hypothetical protein LOC100664266 [Loxodonta africana]
Length = 708
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 134/176 (76%), Gaps = 1/176 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVGDL V ++ LY+ F+ G+++S+R+CRD TRRSLGY YVNY +A RAL
Sbjct: 350 TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 409
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FSTFGNILSCK
Sbjct: 410 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCK 469
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
VA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERES +D
Sbjct: 470 VACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKERESWSD 524
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
Query: 112 RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGY 170
RI+ + DP ++++ +L + L++ FS G ILS ++ D + + S GY
Sbjct: 340 RIISASPDPP-----TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGY 394
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
+V + AK A++ LN ++ + V + +R+ + K+ NV++KNL +T
Sbjct: 395 AYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTI 450
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
L IF FG I S V D G K +GFV+F + + A R+++ +NG + ++ +
Sbjct: 451 DNKALYNIFSTFGNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIF 509
Query: 291 VGKAQKKYERE 301
VG+ + ERE
Sbjct: 510 VGRFKSHKERE 520
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 352 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 411
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 412 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 455
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 456 YNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFK 514
Query: 399 RKEERRA 405
+ER +
Sbjct: 515 SHKERES 521
>gi|293351002|ref|XP_001054954.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 438
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 132/175 (75%), Gaps = 1/175 (0%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL V +S LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 237 FPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKR 296
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ +NF +NG+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 297 ALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 356
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
CKVA D G +GYGFV F +ESA+ AID LNGM LN +++FVG F +ERE+
Sbjct: 357 CKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREA 410
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 241 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 300
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++N + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 301 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 356
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ALNG + ++ +VG+ + ERE E
Sbjct: 357 CKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAW 415
Query: 308 FEQS 311
QS
Sbjct: 416 ARQS 419
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 241 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 300
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 301 MNFDVINGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 344
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ +NG + + ++V +
Sbjct: 345 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 403
Query: 399 RKEERRA 405
+ER A
Sbjct: 404 SHKEREA 410
>gi|399950033|gb|AFP65689.1| polyadenylate-binding protein [Chroomonas mesostigmatica CCMP1168]
Length = 490
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 176/274 (64%), Gaps = 6/274 (2%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + V +S L +F+++G+V S+++CRD ST S GY YVN+ +A +A
Sbjct: 35 CSLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFK 94
Query: 100 ELNFTP---LNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
LN+ L+ KP+RIM+ +D ++R SG GN+FIKN+ + DNK+L FS FG ILS
Sbjct: 95 LLNYYTDETLHYKPLRIMWVQKDKSLRFSGTGNLFIKNIPRRYDNKSLSKLFSQFGKILS 154
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-K 215
CK+A D +S GYGFV + E+ +K AI+K+N ++ +++FVGPF+ K +R + + K
Sbjct: 155 CKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFISKVKRNNRNNSK 214
Query: 216 TRFNNVYVKN-LSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
RF NVY+KN L + E +K +F FG ITS + + A+ F FVNF++P+DA
Sbjct: 215 LRFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPK-ANEAPLGFAFVNFENPEDAED 273
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
++ +NGKK K YVGKA+ + ER+ L KF
Sbjct: 274 AIFKMNGKKIKGKTLYVGKAETRIERQRRLAKKF 307
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 145/292 (49%), Gaps = 23/292 (7%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEES 180
I+ ++++ +L ++ +L FS G + S ++ D S G SRGY +V F N +
Sbjct: 29 IKIKNPCSLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKD 88
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-RFN---NVYVKNLSETTTEDDLK 236
A+ A LN D+ + P LR + DK+ RF+ N+++KN+ L
Sbjct: 89 AQKAFKLLN--YYTDETLHYKP-LRIMWVQK--DKSLRFSGTGNLFIKNIPRRYDNKSLS 143
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
K+F +FG I S + D + +S +GFV++ + D+ +++E +N D ++ +VG
Sbjct: 144 KLFSQFGKILSCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFIS 203
Query: 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKN-LDDSISDDKLKELFSEFGTITSCKVMR 355
K +R K N+Y+KN L + ++ +K+LF FG ITS + +
Sbjct: 204 KVKRN-----------NRNNSKLRFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPK 252
Query: 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL 407
N G FV F E+A A+ +MNGK + K LYV A+ + ER+ RL
Sbjct: 253 -ANEAPLGFAFVNFENPEDAEDAIFKMNGKKIKGKTLYVGKAETRIERQRRL 303
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 22/200 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +LS E L KIF + G + S + RD + G S+ + +VNF +P DA ++ +
Sbjct: 36 SLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFKL 95
Query: 279 LNGKKFDDKEWYVGKA-QKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDD 336
LN +Y + K R M ++ K+ + +F G NL++KN+ +
Sbjct: 96 LN--------YYTDETLHYKPLRIMWVQ-------KDKSLRFSGTGNLFIKNIPRRYDNK 140
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV-- 394
L +LFS+FG I SCK+ D N S G GFV + +++ KA+ +MN + + ++V
Sbjct: 141 SLSKLFSQFGKILSCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGP 200
Query: 395 --ALAQRKEERRARLQFSQM 412
+ +R ++L+F+ +
Sbjct: 201 FISKVKRNNRNNSKLRFTNV 220
>gi|344281908|ref|XP_003412718.1| PREDICTED: hypothetical protein LOC100663984 [Loxodonta africana]
Length = 640
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 142/197 (72%), Gaps = 3/197 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVGDL V ++ LY+ F+ G+++S+R+CRD TRRSLGY YVNY +A RAL
Sbjct: 441 TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 500
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FSTFGNILSCK
Sbjct: 501 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCK 560
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKT 216
VA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 561 VACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWAR 619
Query: 217 RFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 620 QSTSADVKDFDEDTDEE 636
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 11/210 (5%)
Query: 112 RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGY 170
RI+ + DP ++++ +L + L++ FS G ILS ++ D + + S GY
Sbjct: 431 RIISASPDPP-----TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGY 485
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
+V + AK A++ LN ++ + V + +R+ + K+ NV++KNL +T
Sbjct: 486 AYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTI 541
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
L IF FG I S V D G K +GFV+F + + A R+++ +NG + ++ +
Sbjct: 542 DNKALYNIFSTFGNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIF 600
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADKFE 320
VG+ + ERE E QS F+
Sbjct: 601 VGRFKSHKEREAERGAWARQSTSADVKDFD 630
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 443 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 502
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLYVKNLDDSIS 334
LN FD +KG+ S ++ + + G+ N+++KNL +I
Sbjct: 503 LN---FD-----------------VIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTID 542
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L +FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V
Sbjct: 543 NKALYNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFV 601
Query: 395 ALAQRKEERRA 405
+ +ER A
Sbjct: 602 GRFKSHKEREA 612
>gi|441675859|ref|XP_003280927.2| PREDICTED: uncharacterized protein LOC100588478 [Nomascus
leucogenys]
Length = 485
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 142/207 (68%), Gaps = 3/207 (1%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GG F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY
Sbjct: 276 GGYEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 335
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+A RAL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ F
Sbjct: 336 QQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF 395
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FGNILSCKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +E
Sbjct: 396 SAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKE 454
Query: 209 REST--ADKTRFNNVYVKNLSETTTED 233
RE+ A + + VK+ E T E+
Sbjct: 455 REAERGAWARQSTSADVKDFEEDTDEE 481
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 288 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 347
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 348 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 403
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 404 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 462
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 463 ARQSTSADVKDFE 475
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 288 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 347
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 348 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 391
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 392 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 450
Query: 399 RKEERRA 405
+ER A
Sbjct: 451 SHKEREA 457
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 332 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 391
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 392 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 451
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 452 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 510
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 511 ARQSTSADVKDFEEDTDEE 529
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 336 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 395
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 396 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 451
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 452 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 510
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 511 ARQSTSADVKDFE 523
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 336 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 395
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 396 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 439
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 440 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 498
Query: 399 RKEERRA 405
+ER A
Sbjct: 499 SHKEREA 505
>gi|395754119|ref|XP_002831853.2| PREDICTED: uncharacterized protein LOC100437512 [Pongo abelii]
Length = 528
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 327 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 386
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 387 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 446
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 447 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 505
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 506 ARQSTSADVKDFEEDTDEE 524
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 390
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 391 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 446
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 447 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 505
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 506 ARQSTSADVKDFE 518
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 390
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 391 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 434
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 435 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 493
Query: 399 RKEERRA 405
+ER A
Sbjct: 494 SHKEREA 500
>gi|296470851|tpg|DAA12966.1| TPA: PABPC1L2B protein-like [Bos taurus]
Length = 489
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 288 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 347
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 348 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 407
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 408 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 466
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 467 ARQSTSADVKDFEEDTDEE 485
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 291 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 350
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 351 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 406
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 407 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 465
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 466 WARQSTSADVKDFE 479
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 292 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 351
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 352 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 395
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 396 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 454
Query: 399 RKEERRA 405
+ER A
Sbjct: 455 SHKEREA 461
>gi|309271474|ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus]
Length = 229
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/184 (57%), Positives = 135/184 (73%), Gaps = 2/184 (1%)
Query: 29 GGVGDAR-QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
GG D F + SLYVGDL V +S LY+ F+ G ++S+R+CRD TRRSLGY YVN
Sbjct: 19 GGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVN 78
Query: 88 YNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
Y +A RAL+ +NF +NG+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++
Sbjct: 79 YQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNI 138
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FGNILSCKVA D G +GYGFV F +ESA+ AID LNGM LN +++FVG F +
Sbjct: 139 FSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHK 197
Query: 208 ERES 211
ERE+
Sbjct: 198 EREA 201
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++N + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 92 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 147
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ALNG + ++ +VG+ + ERE E
Sbjct: 148 CKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAW 206
Query: 308 FEQS 311
QS
Sbjct: 207 ARQS 210
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 92 MNFDVINGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 135
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ +NG + + ++V +
Sbjct: 136 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 194
Query: 399 RKEERRA 405
+ER A
Sbjct: 195 SHKEREA 201
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/190 (56%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +DA ++VE
Sbjct: 1 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 60
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+K
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALA
Sbjct: 121 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 398 QRKEERRARL 407
QRKEER+A L
Sbjct: 180 QRKEERKAHL 189
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 115/188 (61%), Gaps = 13/188 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKN + +D+++L + FS FG LS KV D G+S+G+GFV ++ E A A++++
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDLK 236
NG ++ K +FVG +K ER++ + +R+ N+Y+KNL +T ++ L+
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 122
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
K F FG ITS VM + DG+SK FGFV F P++A ++V +NG+ K YV AQ+
Sbjct: 123 KEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 181
Query: 297 KYEREMEL 304
K ER+ L
Sbjct: 182 KEERKAHL 189
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 18/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + V+D L +LF+Q G+ +SV+V RD + +S G+G+V+Y +A +A++
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKGFGFVSYEKHEDANKAVE 60
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N ++GK I R + I + N++IKNLD +ID++
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 121 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 204 LRKQERES 211
RK+ER++
Sbjct: 180 QRKEERKA 187
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 71/106 (66%), Gaps = 5/106 (4%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+Y+KN + + D+ LKELFS+FG S KVMRDPNG S+G GFV++ E+A+KA+ EM
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 383 NGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPV 426
NGK + K ++V AQ+K ER+A L +F Q++ R+ Y V
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ---ERISRYQGV 105
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 101 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 158
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 159 KAVTEMNGRIVGSKPLYVALAQR 181
>gi|297791101|ref|XP_002863435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309270|gb|EFH39694.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 341
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 146/296 (49%), Positives = 174/296 (58%), Gaps = 56/296 (18%)
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
DD + L E T T+ + + +SRGSGFVAFST EEAS+A+TEMNGKM+V+KPLYV
Sbjct: 84 DDNVPSLIEEVITTTTHRSL----SLSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYV 139
Query: 395 ALAQRKEERRARLQFS--QMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQ 452
ALAQRKE+ +ARLQ M P VGPRM MYPP P +GQ
Sbjct: 140 ALAQRKEDCKARLQMRPVNMPPAVGPRMQMYPPGGPPMGQ-------------------- 179
Query: 453 QQLVPGMRPNYFVPMVQPG---QQNQRPGGRRSGTGPMQQAQQPIP-LMQPRMLPRGRIY 508
QL G P +P QPG QQ PG R G+ P+P P M +
Sbjct: 180 -QLFYGQGPPAMIP-PQPGFGYQQQLVPGMRPGGS--------PMPNFFMPMMQQGQQQQ 229
Query: 509 RYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRT 568
+ GG+ RD+ SQ + GALA+ LANA+PEQQRT
Sbjct: 230 QQQQQQQQ----------------QYGGGVHHRDSPASQSVPIGALATQLANAAPEQQRT 273
Query: 569 LLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRN 624
+LGENLYPLV+QLE ++AAKVTGMLLEMDQTEVLHLLESPEALKAKV EAM+VLR+
Sbjct: 274 MLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRS 329
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V V ++ T +D++ + E +IT+T + S+ GFV F P++A+R++ +N
Sbjct: 73 VRVIKVARTYRDDNVPSLIEE--VITTTT--HRSLSLSRGSGFVAFSTPEEASRAITEMN 128
Query: 281 GKKFDDKEWYVGKAQKKYEREMELK 305
GK K YV AQ+K + + L+
Sbjct: 129 GKMIVTKPLYVALAQRKEDCKARLQ 153
>gi|397508069|ref|XP_003824497.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Pan paniscus]
Length = 293
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 92 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 151
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 152 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 211
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 212 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 270
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 271 ARQSTSADVKDFEEDTDEE 289
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 95 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 154
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 155 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 210
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 211 SCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGA 269
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 270 WARQSTSADVKDFE 283
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 96 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 155
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 156 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 199
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 200 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 258
Query: 399 RKEERRA 405
+ER A
Sbjct: 259 SHKEREA 265
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 101/159 (63%), Positives = 127/159 (79%), Gaps = 1/159 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++V
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 18/169 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 72 MNFDVIKGKPVRIMWSQR------------DPSLRKSGVG----NIFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
+ FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG ++
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K V + +R+ + K+ N+++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
S V+ D +G SK +GFV+F+ + A R++E +NG +D++
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTAEEASKAL 379
+LYV +L +++ L E FS G I S +V RD I+R G +V F +A +AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM--ITRRSLGYAYVNFQQPADAERAL 69
Query: 380 TEMNGKMVVSKPLYVALAQRKEERR 404
MN ++ KP+ + +QR R
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|297304162|ref|XP_002806331.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Macaca mulatta]
Length = 249
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 142/207 (68%), Gaps = 3/207 (1%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GG F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY
Sbjct: 40 GGCEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 99
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+A RAL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ F
Sbjct: 100 QQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF 159
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FGNILSCKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +E
Sbjct: 160 SAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKE 218
Query: 209 REST--ADKTRFNNVYVKNLSETTTED 233
RE+ A + + VK+ E T E+
Sbjct: 219 REAERGAWARQSTSADVKDFEEDTDEE 245
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 52 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 111
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 112 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 167
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 168 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 226
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 227 ARQSTSADVKDFE 239
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 52 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 111
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 112 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 155
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 156 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 214
Query: 399 RKEERRA 405
+ER A
Sbjct: 215 SHKEREA 221
>gi|395863403|ref|XP_003803885.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Otolemur garnettii]
Length = 203
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 2 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 61
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 62 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 121
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 122 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 180
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 181 ARQSTSADVKDFEEDTDEE 199
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 5 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 64
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 65 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 120
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 121 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 179
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 180 WARQSTSADVKDFE 193
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 20/188 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 6 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 65
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDK 337
LN + + +Q+ + SL+++ G+ N+++KNL +I +
Sbjct: 66 LNFDVIKGRPVRIMWSQR------------DPSLRKS-----GVGNVFIKNLGKTIDNKA 108
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L +FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V
Sbjct: 109 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 167
Query: 398 QRKEERRA 405
+ +ER A
Sbjct: 168 KSHKEREA 175
>gi|291407697|ref|XP_002720156.1| PREDICTED: polyadenylate-binding protein 1-like [Oryctolagus
cuniculus]
gi|301792853|ref|XP_002931393.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Ailuropoda
melanoleuca]
gi|311276495|ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|335306198|ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|281338845|gb|EFB14429.1| hypothetical protein PANDA_022442 [Ailuropoda melanoleuca]
Length = 200
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 139/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLYVKNLDDSIS 334
LN FD +KG+ S ++ + + G+ N+++KNL +I
Sbjct: 63 LN---FD-----------------VIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTID 102
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L +FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V
Sbjct: 103 NKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Query: 395 ALAQRKEERRA 405
+ +ER A
Sbjct: 162 GRFKSHKEREA 172
>gi|359081870|ref|XP_003588203.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|395862938|ref|XP_003803673.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Otolemur
garnettii]
Length = 200
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 139/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 20/188 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDK 337
LN + + +Q+ + SL+++ G+ N+++KNL +I +
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKS-----GVGNVFIKNLGKTIDNKA 105
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L +FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 398 QRKEERRA 405
+ +ER A
Sbjct: 165 KSHKEREA 172
>gi|351699464|gb|EHB02383.1| Polyadenylate-binding protein 1-like 2 [Heterocephalus glaber]
Length = 200
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/171 (59%), Positives = 130/171 (76%), Gaps = 1/171 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FSTFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREA 172
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTGADCKGFE 190
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSTFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRA 405
+ER A
Sbjct: 166 SHKEREA 172
>gi|194228035|ref|XP_001914759.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Equus
caballus]
Length = 200
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 138/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ F G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 20/188 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDK 337
LN + + +Q+ + SL+++ G+ N+++KNL +I +
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKS-----GVGNVFIKNLGKTIDNKA 105
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L +FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 398 QRKEERRA 405
+ +ER A
Sbjct: 165 KSHKEREA 172
>gi|123408784|ref|XP_001303266.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884631|gb|EAX90336.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 461
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/391 (35%), Positives = 219/391 (56%), Gaps = 14/391 (3%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++T ++VGDL +++S L F + G+++ S V + T S + +V + +A
Sbjct: 4 LTTQIFVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDS-SFAFVTFATHEQAA 62
Query: 96 RALDELNFTPLNGKPIRIMYS-YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+A+ LN+T L+G+PIRI++ I KSG G++FI LD+SI+ LHD FS FG I
Sbjct: 63 KAMKNLNYTKLDGRPIRILWCDTETKAIIKSGRGSLFINGLDESIEVSQLHDAFSNFGEI 122
Query: 155 LSCKV-ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
+SCK+ TD G+SRGYG++QF N E+A+ A +L +N K + + + RK R
Sbjct: 123 ISCKIPLTD--GKSRGYGYIQFRNPENAEKAKLELADASINGKPIKIDNYNRKSRRNPDE 180
Query: 214 DKTRFNNVYVKNL--SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
D F NVY+K L + T++DL+KIF FG I + ++ +D +G SK FGF NF +D
Sbjct: 181 D---FTNVYIKPLPVDQVKTDEDLRKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLHED 237
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE LNG++ V + K E+E+ K + +++ A++ G NLYVK+
Sbjct: 238 AVKAVEGLNGQEMFGVTLQVNRLMSKREKELYNIKKHTEKVEKFAEETNGRNLYVKSFSK 297
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
++D + +E FS+FG I K+ R P S+G GFV + + E+A A+ + +
Sbjct: 298 DVTDKEFQEYFSKFGEIELFKIERVPETKESKGFGFVLYKSKEDAQNAIEMAMLERLHGD 357
Query: 391 PLYVALAQRK-EERRARLQFSQMRPPVGPRM 420
YV Q K R +++ + RP P +
Sbjct: 358 LPYVGFFQTKAAHERVKVKNTHPRPSAVPAI 388
>gi|61175237|ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|109948285|ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|402910552|ref|XP_003917938.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Papio anubis]
gi|426396426|ref|XP_004064444.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Gorilla gorilla
gorilla]
gi|74755614|sp|Q5JQF8.1|PAP1M_HUMAN RecName: Full=Polyadenylate-binding protein 1-like 2; AltName:
Full=RNA-binding motif protein 32; AltName:
Full=RNA-binding protein 32
gi|119619077|gb|EAW98671.1| hCG1811470 [Homo sapiens]
gi|187951483|gb|AAI36493.1| PABPC1L2A protein [Homo sapiens]
gi|261861056|dbj|BAI47050.1| poly(A) binding protein, cytoplasmic 1-like 2A [synthetic
construct]
gi|355704922|gb|EHH30847.1| RNA-binding protein 32 [Macaca mulatta]
gi|355767263|gb|EHH62597.1| RNA-binding protein 32 [Macaca fascicularis]
gi|380784435|gb|AFE64093.1| polyadenylate-binding protein 1-like 2 [Macaca mulatta]
Length = 200
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/195 (54%), Positives = 139/195 (71%), Gaps = 3/195 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 219 NNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLYVKNLDDSIS 334
LN FD +KG+ S ++ + + G+ N+++KNL +I
Sbjct: 63 LN---FD-----------------VIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTID 102
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L +FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V
Sbjct: 103 NKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 161
Query: 395 ALAQRKEERRA 405
+ +ER A
Sbjct: 162 GRFKSHKEREA 172
>gi|426257244|ref|XP_004022242.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Ovis aries]
Length = 200
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 139/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLYVKNLDDSIS 334
LN FD +KG+ S ++ + + G+ N+++KNL +I
Sbjct: 63 LN---FD-----------------VIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTID 102
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L +FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V
Sbjct: 103 NKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Query: 395 ALAQRKEERRA 405
+ +ER A
Sbjct: 162 GRFKSHKEREA 172
>gi|119923699|ref|XP_599343.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|297493007|ref|XP_002700050.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|358420984|ref|XP_003584787.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|296470850|tpg|DAA12965.1| TPA: PABPC1L2B protein-like [Bos taurus]
gi|440892195|gb|ELR45496.1| Polyadenylate-binding protein 1-like 2 [Bos grunniens mutus]
Length = 200
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 139/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 20/188 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDK 337
LN + + +Q+ + SL+++ G+ N+++KNL +I +
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKS-----GVGNVFIKNLGKTIDNKA 105
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L +FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 398 QRKEERRA 405
+ +ER A
Sbjct: 165 KSHKEREA 172
>gi|348570494|ref|XP_003471032.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Cavia
porcellus]
Length = 200
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 129/172 (75%), Gaps = 1/172 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREA 172
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADCKDFE 190
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLYVKNLDDSIS 334
LN FD +KG+ S ++ + + G+ N+++KNL +I
Sbjct: 63 LN---FD-----------------VIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTID 102
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L +FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V
Sbjct: 103 NKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Query: 395 ALAQRKEERRA 405
+ +ER A
Sbjct: 162 GRFKSHKEREA 172
>gi|444516866|gb|ELV11302.1| Polyadenylate-binding protein 1-like 2 [Tupaia chinensis]
Length = 200
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 129/172 (75%), Gaps = 1/172 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREA 172
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLYVKNLDDSIS 334
LN FD +KG+ S ++ + + G+ N+++KNL +I
Sbjct: 63 LN---FD-----------------VIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTID 102
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L +FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V
Sbjct: 103 NKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Query: 395 ALAQRKEERRA 405
+ +ER A
Sbjct: 162 GRFKSHKEREA 172
>gi|431844457|gb|ELK01429.1| Polyadenylate-binding protein 1-like 2 [Pteropus alecto]
Length = 200
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 129/172 (75%), Gaps = 1/172 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL KSIDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
A D G +GYGFV F +ESA+ AI+ +NGM LN +++FVG F +ERE+
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREA 172
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 6/184 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALET 62
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL ++ L IF FG I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILS 118
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R++ A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 308 FEQS 311
QS
Sbjct: 178 ARQS 181
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL SI + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKSIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRA 405
+ER A
Sbjct: 166 SHKEREA 172
>gi|160331003|ref|XP_001712209.1| pab1 [Hemiselmis andersenii]
gi|159765656|gb|ABW97884.1| pab1 [Hemiselmis andersenii]
Length = 502
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 179/275 (65%), Gaps = 6/275 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
ST LYVGDL L++ + + +F +G + SV++ RD+S+ +GY +V + +A RAL
Sbjct: 39 STCLYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERAL 98
Query: 99 DELN--FTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+LN F P KP+R+M+ +D + KSG GNIFIKNL D+K+L F FG IL
Sbjct: 99 TKLNYYFDPEKMKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDFGKIL 158
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA-D 214
SCKVA D G S GYGFV F++E+++K AI+K NG+++ +K++FVGPFL +++R++
Sbjct: 159 SCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDRKNFGMT 218
Query: 215 KTRFNNVYVKNLS-ETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
KT F N+Y+KN+S E E +K +F FG ITS + ++ + +K F FVN++ P++A
Sbjct: 219 KTGFTNIYIKNISPENCNETFIKDLFDIFGKITSIYIPKNNNF-TKGFAFVNYELPEEAE 277
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
++ +N KK + YVGKA+ K ER+ L+ KF
Sbjct: 278 DAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKF 312
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 142/283 (50%), Gaps = 27/283 (9%)
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
+ F T G + S K+ D S G+ GY FV+F+N + A+ A+ KLN +K
Sbjct: 56 IEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALTKLNYYFDPEK------ 109
Query: 203 FLRKQERESTADKTRF------NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
++K R K +F N+++KNL L+K+F +FG I S V D +G
Sbjct: 110 -MKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDFGKILSCKVALDENG 168
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
S +GFV+F+D + ++E NG +K+ +VG + +R ++ T
Sbjct: 169 TSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDR---------KNFGMTK 219
Query: 317 DKFEGLNLYVKNLD-DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
F N+Y+KN+ ++ ++ +K+LF FG ITS + ++ N ++G FV + EEA
Sbjct: 220 TGFT--NIYIKNISPENCNETFIKDLFDIFGKITSIYIPKN-NNFTKGFAFVNYELPEEA 276
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGP 418
A+ MN K + + LYV A+ K ER+ LQ + +GP
Sbjct: 277 EDAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKFLEKKIGP 319
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 22/189 (11%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L E+D++KIF G + S + RD + G+ + FV F++ DA R++ L
Sbjct: 42 LYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALTKL 101
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE----GLNLYVKNLDDSISD 335
N ++ + KK R M + DKF G N+++KNL
Sbjct: 102 NY-------YFDPEKMKKPLRLMWYQ----------KDKFLLKSGGGNIFIKNLPLFFDS 144
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
L+++F +FG I SCKV D NG S G GFV F + + A+ + NG ++ K ++V
Sbjct: 145 KSLEKMFLDFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVG 204
Query: 396 LAQRKEERR 404
+++R+
Sbjct: 205 PFLSRKDRK 213
>gi|27469824|gb|AAH41956.1| PABPC1L2B protein [Homo sapiens]
Length = 243
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 139/199 (69%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+ +CRD TRRSLGY YVNY +A R
Sbjct: 42 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKR 101
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 102 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 161
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 162 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 220
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 221 ARQSTSADVKDFEEDTDEE 239
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS + D + + S GY +V + AK A++
Sbjct: 45 ASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRALE 104
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 105 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 160
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 161 SCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGA 219
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 220 WARQSTSADVKDFE 233
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 18/187 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S ++ RD +S + +VN+ P DA R++E
Sbjct: 46 SLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRALET 105
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 106 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 149
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 150 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 208
Query: 399 RKEERRA 405
+ER A
Sbjct: 209 SHKEREA 215
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 171/253 (67%), Gaps = 5/253 (1%)
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FGNILSCKV D G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +E
Sbjct: 1 SAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 209 RES---TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
R + T D+ F NV+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV
Sbjct: 60 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 119
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
++ + A ++V L+GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y
Sbjct: 120 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 179
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD++I+D+KLKE FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+
Sbjct: 180 IKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGR 238
Query: 386 MVVSKPLYVALAQ 398
+V SKPL+V L Q
Sbjct: 239 VVGSKPLHVTLGQ 251
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 10/164 (6%)
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
FG I S V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER
Sbjct: 3 FGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERA 61
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
E++ T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S
Sbjct: 62 AEVR---------TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKS 112
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
+G GFV + T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 113 KGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 156
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 141/257 (54%), Gaps = 26/257 (10%)
Query: 63 MGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSY--- 117
G ++S +V C D ++ GY YV++++ A RA+ +N LN + + + + +
Sbjct: 3 FGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 118 RDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQ 174
R +R ++ N+F+KN+ ID++ L + F +G S KV D+ G+S+G+GFV+
Sbjct: 60 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 119
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER----------ESTADKTRFNNV--Y 222
++ E+A+ A+ L+G ++ K ++VG +K ER +K+R V Y
Sbjct: 120 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 179
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
+KNL ET ++ LK+ F FG I+ VM + G+ K FG V F ++A ++V+ +NG+
Sbjct: 180 IKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGR 238
Query: 283 KFDDKEWYV--GKAQKK 297
K +V G+A+++
Sbjct: 239 VVGSKPLHVTLGQARRR 255
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +LD ++ND +L + F+ G + +V ++ + G+G V +++ EAT+A+DE+
Sbjct: 178 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEM 235
Query: 102 NFTPLNGKPIRI 113
N + KP+ +
Sbjct: 236 NGRVVGSKPLHV 247
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/194 (52%), Positives = 136/194 (70%), Gaps = 6/194 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKV + G+S+G+GFV F + E A A+ ++NG ++ K ++V RK+ER
Sbjct: 125 ILSCKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER---- 179
Query: 214 DKTRFNNVYVKNLS 227
K N Y++ ++
Sbjct: 180 -KAHLTNQYMQRVA 192
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 116/201 (57%), Gaps = 18/201 (8%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 72 MNFDVIKGKPIRIMWSQR------------DPSLRKSGVG----NVFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 116 YDTFSAFGNILSCKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 174
Query: 399 RKEERRARLQFSQMRPPVGPR 419
RKEER+A L M+ G R
Sbjct: 175 RKEERKAHLTNQYMQRVAGMR 195
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
VM + DG+SK FGFV F P++A ++V +NG+ K YV AQ+K ER+ L +
Sbjct: 128 CKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQ 186
Query: 308 FEQSL 312
+ Q +
Sbjct: 187 YMQRV 191
>gi|123407356|ref|XP_001302991.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884332|gb|EAX90061.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 477
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 145/409 (35%), Positives = 219/409 (53%), Gaps = 33/409 (8%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL SV+++ + ++F G S V + +V + + A RA+ E+
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 102 NFTPLNGKPIRIMYSYRDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N+T L+G PIRI++S DP + K+ G +FI+ LD++I+ LHD FS FG I+SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCK 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ + G+SRGYGF+ F E+ AK A L +N K + + F +K R++ + F
Sbjct: 126 IPLTN-GKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQI-EFYQKPTRKNPEET--F 181
Query: 219 NNVYVKNLSETT--TEDDLKKIFGEFGIITST-----AVMRDADGKSKCFGFVNFDDPDD 271
NV++K L T+DDL F EFG T A+ R DG S FGF NF +D
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFCNFKHHED 241
Query: 272 AARSVEALNGKKFDDKE--WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
A ++V+ALNGK+ + + + +AQ K ER+ L + + + ++ G NLYVKN
Sbjct: 242 AVKAVDALNGKQHESGKVTFSCCRAQTKAERQAFLAKQSAEFRRRLNEETRGRNLYVKNF 301
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPN--GISRGSGFVAFSTAEEASKAL-----TEM 382
D S++D++ KE F +FG + C + R+ S+G GFV F T E A AL T +
Sbjct: 302 DQSVTDEQFKEYFEQFGEVEKCSIRREAQEPHESKGFGFVLFKTKESAQNALENAVITPL 361
Query: 383 NGKMVVSKPLYVALAQRKEER-RARLQFSQMRPPVGPRMP--MYPPVAP 428
NGK Y+ L + KEER R + + + P G +P + PV P
Sbjct: 362 NGKTP-----YIGLFKMKEEREREKASNQRKQQPKGAMIPNTIGGPVIP 405
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 144/288 (50%), Gaps = 28/288 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++ LD ++ SQL+D F+ G++VS ++ L+ +S GYG++ + +A RA +
Sbjct: 96 ALFIRGLDENIEVSQLHDAFSNFGEIVSCKI--PLTNGKSRGYGFITFYKEDDAKRAKTD 153
Query: 101 LNFTPLNGKPIRIMYSYRDPTIR--KSGAGNIFIKNLDKSI--DNKALHDTFSTFGNILS 156
L +NGKPI+I + Y+ PT + + N+FIK L I + L + F FG+ +
Sbjct: 154 LADASINGKPIQIEF-YQKPTRKNPEETFTNVFIKPLPADIFKTDDDLANFFKEFGDFVV 212
Query: 157 CKVATDSL-----GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG---------- 201
A ++ G S +GF F + E A A+D LNG +V
Sbjct: 213 TGKANPAIKRKEDGSSCEFGFCNFKHHEDAVKAVDALNGKQHESGKVTFSCCRAQTKAER 272
Query: 202 -PFLRKQE---RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-- 255
FL KQ R ++TR N+YVKN ++ T++ K+ F +FG + ++ R+A
Sbjct: 273 QAFLAKQSAEFRRRLNEETRGRNLYVKNFDQSVTDEQFKEYFEQFGEVEKCSIRREAQEP 332
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+SK FGFV F + A ++E + K Y+G + K ERE E
Sbjct: 333 HESKGFGFVLFKTKESAQNALENAVITPLNGKTPYIGLFKMKEERERE 380
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 17/183 (9%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ V+V +L + E+ +K+IF ++G S T ++ K F FV F+ + A R++
Sbjct: 5 WKEVFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAI 64
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+N K D + ++ + + A K L+++ LD++I
Sbjct: 65 SEVNYTKLDG---------------VPIRILWSDPGTKRAIKNNVGALFIRGLDENIEVS 109
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L + FS FG I SCK+ NG SRG GF+ F ++A +A T++ + KP+ +
Sbjct: 110 QLHDAFSNFGEIVSCKIPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEF 168
Query: 397 AQR 399
Q+
Sbjct: 169 YQK 171
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 148/325 (45%), Positives = 188/325 (57%), Gaps = 41/325 (12%)
Query: 191 MLLNDKQVFVGPFLRKQERESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
MLL K+VFVG F + +R +T ++ NVYVKN + ++ L+K+F ++G ITS
Sbjct: 1 MLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSC 60
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMELKG 306
VM +DGKSK FGFV F +P++A +V+ALN + D + +V +AQKK ER ELK
Sbjct: 61 DVM-TSDGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKK 119
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K EQ E K++G+NLYVKNLD+S+ D+ LK+ F FG ITS KVM D NG S+G GF
Sbjct: 120 KHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGF 179
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPV 426
V F EEA+ A+TEMN KMV SKPLYVALAQRKE+RRA+L M+ RM
Sbjct: 180 VCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTN--- 236
Query: 427 APGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFV--PMVQP----GQQNQRPGGR 480
PG G Y Q PQPG P Y+V PM Q G Q RPGGR
Sbjct: 237 VPGGG---LYPQ-----QPQPG------------PGYYVANPMQQQRNFGGPQMVRPGGR 276
Query: 481 RSGTGPMQQAQQPIPLMQPRMLPRG 505
GP Q P+ M+ +G
Sbjct: 277 ---WGPQNQ----YPVQNQYMMAQG 294
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV + N L LF + G + S V S +S G+G+V + EA A+
Sbjct: 31 TNVYVKNFGDHYNKESLEKLFAKYGTITSCDVM--TSDGKSKGFGFVAFAEPEEAEAAVQ 88
Query: 100 ELNFTPLNGKPIRIMYS------------------YRDPTIRKSGAGNIFIKNLDKSIDN 141
LN +P+ G +++ ++ ++K N+++KNLD+S+D+
Sbjct: 89 ALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDD 148
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
+AL F +FGNI S KV TD G+S+G+GFV F+ E A +A+ ++N ++ K ++V
Sbjct: 149 EALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVA 208
Query: 202 PFLRKQERES 211
RK++R +
Sbjct: 209 LAQRKEDRRA 218
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD SV+D L F G + S +V D RS G+G+V + EA
Sbjct: 130 QKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTD-ENGRSKGFGFVCFEKPEEA 188
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIR 123
T A+ E+N + KP+ + + R R
Sbjct: 189 TTAVTEMNSKMVCSKPLYVALAQRKEDRR 217
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/158 (62%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 70
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 71 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 130
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
D G SRGYGFV F+ E+A AI+ +NGMLLND++V
Sbjct: 131 CDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 167
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD A +S + ++NF P DA R+++
Sbjct: 11 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 70
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + + +Q+ + L+++ N+++KNLDDSI + L
Sbjct: 71 MNFEVIKGRPIRIMWSQR------------DPGLRKSGVG----NVFIKNLDDSIDNKAL 114
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
+ FS FG I SCKV+ D NG SRG GFV F T E A++A+ MNG ++
Sbjct: 115 YDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLL 162
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G I+S +V D + +S GY ++ F A+ A+D
Sbjct: 10 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ K+ NV++KNL ++ L F FG I
Sbjct: 70 TMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
S V+ D +G S+ +GFV+F+ + A R++E +NG +D++
Sbjct: 126 SCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRK 166
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTE 381
+LYV +L +++ L E FS G I S +V RD S G ++ F +A +AL
Sbjct: 11 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 70
Query: 382 MNGKMVVSKPLYVALAQR 399
MN +++ +P+ + +QR
Sbjct: 71 MNFEVIKGRPIRIMWSQR 88
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 145/235 (61%), Gaps = 24/235 (10%)
Query: 235 LKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294
L+++F EFG ITS VM D +GKSK FGFV F D + A +V+ALNGK F D++ YVG+A
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 295 QKKYEREMELKGKFEQSLKETADKF-EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
QKK ER EL+ FE+ E + ++ +G+NLYVKNLDDSI D +LK+ F FG ITS KV
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR 413
M D N S+G GFV FS EEA+KA+TEMNGK+ SKPLYVALAQRKE+R+A L M+
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Query: 414 ----------------------PPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 446
PP GP + Y AP Y Q +PPQ
Sbjct: 190 RVNPHRNNYPNQVSVNTLISGGPPGGPSILPY-AFAPNASTPRVYTQSAAFMPPQ 243
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 13/182 (7%)
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F FG I S KV D G+S+G+GFV F + E+A+SA+ LNG + D+Q++VG
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 204 LRKQER-------------ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
+K ER E ++ T+ N+YVKNL ++ + LK+ F FG ITS V
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
M D++ +SK FGFV F +P++A ++V +NGK K YV AQ+K +R+ L ++ Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Query: 311 SL 312
+
Sbjct: 190 RV 191
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 18/174 (10%)
Query: 55 QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114
+L ++F + G++ S +V D +S G+G+V + + A A+ LN + + +
Sbjct: 9 KLREMFLEFGEITSAKVMID-ENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVG 67
Query: 115 YSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ + + + R + N+++KNLD SID+ L F FGNI S
Sbjct: 68 RAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSA 127
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
KV TDS +S+G+GFV F N E A A+ ++NG + K ++V RK++R++
Sbjct: 128 KVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKA 181
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 53/73 (72%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S LA+A +Q+ +LGE LYPLV ++ + A K+TGMLLE+D TE+LH+LES ++L K+
Sbjct: 396 STLASAPIAEQKQMLGERLYPLVHRMYPELAGKITGMLLEIDNTELLHMLESEDSLTTKI 455
Query: 616 AEAMEVLRNVAQQ 628
EAM VL++ Q
Sbjct: 456 EEAMNVLQSHKNQ 468
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E+F EFG ITS KVM D NG S+G GFV F +E A A+ +NGKM + LYV
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 397 AQRKEER--RARLQFSQMR 413
AQ+K ER R F + R
Sbjct: 69 AQKKNERLDELRSHFEKQR 87
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV +LD S++D++L F G + S +V D S RS G+G+V ++ EAT+A+ E
Sbjct: 99 NLYVKNLDDSIDDTRLKQEFVVFGNITSAKVMTD-SNNRSKGFGFVCFSNPEEATKAVTE 157
Query: 101 LNFTPLNGKPIRIMYSYR 118
+N KP+ + + R
Sbjct: 158 MNGKICGSKPLYVALAQR 175
>gi|93359570|gb|ABF13311.1| poly-A binding protein, partial [Phaseolus vulgaris]
Length = 172
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/173 (74%), Positives = 143/173 (82%), Gaps = 19/173 (10%)
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
TITSCKVMRDPNG+SRGSGFVAFST EEAS+AL EMNGKMVVSKPLYV LAQRKE+RRAR
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRAR 60
Query: 407 L--QFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPG 458
L QF+QMR P VGPR+PMYPP PG+GQQ+FY QGPP IIP QPGFGYQQQLVPG
Sbjct: 61 LQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFY-QGPPAIIPSQPGFGYQQQLVPG 119
Query: 459 MR------PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRG 505
MR PN+FVPMVQ GQQ QRPGGRR+ +QQ+QQP+P+M +MLPRG
Sbjct: 120 MRPGAAPVPNFFVPMVQQGQQGQRPGGRRA----VQQSQQPVPMMPQQMLPRG 168
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS VMRD +G S+ GFV F P++A+R++ +NGK K YV AQ+K +R L
Sbjct: 2 ITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRARL 61
Query: 305 KGKFEQ 310
+ +F Q
Sbjct: 62 QAQFAQ 67
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
I SCKV D G SRG GFV F E A A+ ++NG ++ K ++V RK++R +
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRA 59
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 135/196 (68%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +A +ALD
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG ILS KV
Sbjct: 62 TMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK--TR 217
+D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 122 MSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNE 180
Query: 218 FNNVYVKNLSETTTED 233
F NVYVKN + ++
Sbjct: 181 FTNVYVKNFGDDMDDE 196
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 62 TMNFDMIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F + + A R++E +NG D +VG+ + + +RE EL+
Sbjct: 118 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 176
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDD 336
K E N+YVKN D + D+
Sbjct: 177 KVN----------EFTNVYVKNFGDDMDDE 196
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 96/193 (49%), Gaps = 26/193 (13%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +LS TED L K F G + S + RD +S + +VNF DA ++++ +
Sbjct: 4 LYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDTM 63
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLYVKNLDDSISD 335
N FD +KGK S ++ + G+ N+++KNLD SI +
Sbjct: 64 N---FD-----------------MIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDN 103
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
L E FS FG I S KVM D G SRG FV F A +A+ EMNG ++ L+V
Sbjct: 104 KTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVG 162
Query: 396 LAQRKEERRARLQ 408
+ +++R A LQ
Sbjct: 163 RFKNRKDREAELQ 175
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/254 (48%), Positives = 164/254 (64%), Gaps = 19/254 (7%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVK+ + ++ LK++F ++G ITS VM DGK + FGFV F++P+ A +V+
Sbjct: 6 FTNVYVKDFGDELNDETLKEMFEKYGTITSHRVM-IKDGKGRGFGFVAFENPESAEHAVQ 64
Query: 278 ALNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LNGK+ + K YVG+AQKK ER+MELK +FEQ E +++G+NLYVKNLDDSI D+
Sbjct: 65 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 124
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS-TAEEASKALTEMNGKMVVSKPLYVA 395
+L++ FS FGTITS KVM + G S+G GFV FS AEEA+KA+TEMNG++V SKPLYVA
Sbjct: 125 RLRKEFSPFGTITSAKVMLEE-GRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVA 183
Query: 396 LAQRKEERRARLQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIP--PQPGFGYQ 452
LAQR E+R+A L M+ RM M PG G G +P PQP +
Sbjct: 184 LAQRTEDRKAHLASQYMQRMANMRMQHMGQIFQPG-------GNGGYYVPTLPQPQRFFS 236
Query: 453 QQL-----VPGMRP 461
+Q+ PG P
Sbjct: 237 KQVSQIRTTPGWLP 250
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 113/198 (57%), Gaps = 16/198 (8%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++K+ ++++ L + F +G I S +V G+ RG+GFV F+N ESA+ A+ +L
Sbjct: 8 NVYVKDFGDELNDETLKEMFEKYGTITSHRVMIKD-GKGRGFGFVAFENPESAEHAVQEL 66
Query: 189 NGMLLND-KQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDL 235
NG L + K ++VG +K ER+ + TR+ N+YVKNL ++ ++ L
Sbjct: 67 NGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERL 126
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFD-DPDDAARSVEALNGKKFDDKEWYVGKA 294
+K F FG ITS VM + +G+SK FGFV F ++A ++V +NG+ K YV A
Sbjct: 127 RKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVALA 185
Query: 295 QKKYEREMELKGKFEQSL 312
Q+ +R+ L ++ Q +
Sbjct: 186 QRTEDRKAHLASQYMQRM 203
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 33/196 (16%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV D +ND L ++F + G + S RV + + G+G+V + A A+
Sbjct: 7 TNVYVKDFGDELNDETLKEMFEKYGTITSHRVM--IKDGKGRGFGFVAFENPESAEHAVQ 64
Query: 100 ELNFTPLNGKPI---RIMYSYR--------------------DPTIRKSGAGNIFIKNLD 136
E LNGK + +I+Y R + R G N+++KNLD
Sbjct: 65 E-----LNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGV-NLYVKNLD 118
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE-ESAKSAIDKLNGMLLND 195
SID++ L FS FG I S KV + G+S+G+GFV F E A A+ ++NG ++
Sbjct: 119 DSIDDERLRKEFSPFGTITSAKVMLEE-GRSKGFGFVLFSQHAEEATKAVTEMNGRIVGS 177
Query: 196 KQVFVGPFLRKQERES 211
K ++V R ++R++
Sbjct: 178 KPLYVALAQRTEDRKA 193
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN-AAHEA 94
++ +LYV +LD S++D +L F+ G + S +V L RS G+G+V ++ A EA
Sbjct: 106 RYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVM--LEEGRSKGFGFVLFSQHAEEA 163
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E+N + KP+ + + R
Sbjct: 164 TKAVTEMNGRIVGSKPLYVALAQR 187
>gi|402585898|gb|EJW79837.1| Poly(A) binding protein [Wuchereria bancrofti]
Length = 175
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/160 (60%), Positives = 120/160 (75%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G G + SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+
Sbjct: 7 AGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNF 66
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+A RALD +NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNKA++DTF
Sbjct: 67 QQPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTF 126
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
S FGNILSCKVA D S+GYGFV F+ EESA+ AI+K+
Sbjct: 127 SMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 17/164 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RDA +S + +VNF P DA R+++
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + S++ + N+++KNLD SI + +
Sbjct: 79 MNFDMMYGKPIRIMWSQR------------DPSMRRSG----AGNIFIKNLDKSIDNKAI 122
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
+ FS FG I SCKV D S+G GFV F T E A KA+ ++
Sbjct: 123 YDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 13/168 (7%)
Query: 121 TIRKSGAG--------NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYG 171
T+ +GAG ++++ +L + L + FS+ G +LS +V D++ + S GY
Sbjct: 3 TVATAGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYA 62
Query: 172 FVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
+V F A+ A+D +N ++ K + + +R+ + ++ N+++KNL ++
Sbjct: 63 YVNFQQPADAERALDTMNFDMMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKSID 118
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
+ F FG I S V D + SK +GFV+F+ + A +++E +
Sbjct: 119 NKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTAEEASKAL 379
+LYV +L +++ L E FS G + S +V RD I+R G +V F +A +AL
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRD--AITRRSLGYAYVNFQQPADAERAL 76
Query: 380 TEMNGKMVVSKPLYVALAQRKEERR 404
MN M+ KP+ + +QR R
Sbjct: 77 DTMNFDMMYGKPIRIMWSQRDPSMR 101
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 202 bits (514), Expect = 5e-49, Method: Composition-based stats.
Identities = 102/178 (57%), Positives = 133/178 (74%), Gaps = 3/178 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK++FG+FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
M D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 177
Score = 132 bits (331), Expect = 7e-28, Method: Composition-based stats.
Identities = 74/185 (40%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + + E N+Y+KN + + D++LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKELFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+FG S KVM D +G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 404 RARLQ 408
+ L+
Sbjct: 170 QTELK 174
Score = 112 bits (279), Expect = 9e-22, Method: Composition-based stats.
Identities = 62/172 (36%), Positives = 102/172 (59%), Gaps = 8/172 (4%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D S GYG+V++ A RA++++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN + + + + R + GA N++IKN + +D++ L + F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 171
Score = 52.4 bits (124), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S +S G+G+V++ +
Sbjct: 84 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 140
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+DE+N LNGK I +
Sbjct: 141 AQKAVDEMNGKELNGKQIYV 160
>gi|348677381|gb|EGZ17198.1| hypothetical protein PHYSODRAFT_354553 [Phytophthora sojae]
Length = 317
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 147/214 (68%), Gaps = 11/214 (5%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGF 172
M+S RDP++RKSG GNIF+KNLD SIDNKAL+DTFS FGNILSCKVA D + G S+GYG+
Sbjct: 1 MWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGY 60
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTE 232
V ++ E+A AI K+NGML+ +VFVG F ++Q+R D T N YVKN+ T+
Sbjct: 61 VHYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDRPDADDWT---NCYVKNIPTQWTD 117
Query: 233 DDLKKIFGEFGIITSTAVMRDADG--KSKCFGFVNFDDPDDAARSVEALNGKKFD----- 285
DL K F FG + S VM+D +++ FGFVN++D + A ++V+ALNGK +
Sbjct: 118 ADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGV 177
Query: 286 DKEWYVGKAQKKYEREMELKGKFEQSLKETADKF 319
+ E YVGKAQK+ ERE EL+ KFEQ E +K+
Sbjct: 178 ETELYVGKAQKRSERERELRNKFEQLKMERINKY 211
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 105/199 (52%), Gaps = 9/199 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ LYD F+ G ++S +V D +T S GYGYV+Y A AT A+ +
Sbjct: 16 NIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHYETAEAATEAIAK 75
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N + G + + + R N ++KN+ + L F FG +LS V
Sbjct: 76 INGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVV 135
Query: 160 ATDSLG--QSRGYGFVQFDNEESAKSAIDKLNGMLL-----NDKQVFVGPFLRKQEREST 212
D+ Q+RG+GFV +++ E+A A+D LNG + +++VG ++ ERE
Sbjct: 136 MKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVETELYVGKAQKRSERERE 195
Query: 213 ADKTRFNNVYVKNLSETTT 231
+ +F + ++ +++ T
Sbjct: 196 L-RNKFEQLKMERINKYTA 213
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNF 266
+R+ + K+ N++VKNL + L F FG I S V D G SK +G+V++
Sbjct: 4 QRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHY 63
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
+ + A ++ +NG E +VG QK+ +R D + N YV
Sbjct: 64 ETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR---------------PDADDWTNCYV 108
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNG--ISRGSGFVAFSTAEEASKALTEMNG 384
KN+ +D L + F FG + S VM+D +RG GFV + +E A KA+ +NG
Sbjct: 109 KNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNG 168
Query: 385 KMV-----VSKPLYVALAQRKEERRARL--QFSQMR 413
K V LYV AQ++ ER L +F Q++
Sbjct: 169 KSYPAGEGVETELYVGKAQKRSERERELRNKFEQLK 204
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 50/61 (81%)
Query: 562 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
SPE Q+ ++GE LYPL+ + + + A K+TGMLLEMD E+LHLLESPEAL+AK++EA+ V
Sbjct: 252 SPEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKISEALAV 311
Query: 622 L 622
L
Sbjct: 312 L 312
>gi|293331471|ref|NP_001168063.1| uncharacterized protein LOC100381794 [Zea mays]
gi|223945787|gb|ACN26977.1| unknown [Zea mays]
Length = 183
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/189 (60%), Positives = 141/189 (74%), Gaps = 9/189 (4%)
Query: 464 FVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM-QPRMLPRG-RIYRYPPGCNIPDVPV 521
+PMVQ GQQ QRP GRR+G QQP+P+ Q ++ PRG R YRYP G +PD +
Sbjct: 1 MMPMVQQGQQPQRPAGRRAGG-----MQQPMPMGGQQQVFPRGGRGYRYPTGRGMPDPGM 55
Query: 522 AGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQL 581
V G ++P Y++GGMP R+AA QP+ GALA+ALANA P+QQR +LGENLYPLV+QL
Sbjct: 56 HSV-GAVMPPSYEMGGMPMREAA-PQPVPIGALATALANAPPDQQRLMLGENLYPLVEQL 113
Query: 582 EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVAS 641
E + AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLR+ Q + S ++A+
Sbjct: 114 EREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQQLAN 173
Query: 642 LSLNDNIVS 650
LSLND +VS
Sbjct: 174 LSLNDGVVS 182
>gi|429966446|gb|ELA48443.1| hypothetical protein VCUG_00052 [Vavraia culicis 'floridensis']
Length = 511
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/374 (35%), Positives = 212/374 (56%), Gaps = 15/374 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR---DLSTRRSLGYGYVNYNAAHEAT 95
+ ++YVGDL L +S LY +F+ +G ++++++ + D + Y YV ++ EA
Sbjct: 15 NCTVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQEEEAL 74
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+++LNF ++ K +R+M Y I+ GNI IKNL D+K LHDTFS FG IL
Sbjct: 75 EAVNKLNFFKVHDKEMRVML-YDKERIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGEIL 133
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA +S G+ +G+GFVQF N+ A+ A+ M ++ + V + K + T +
Sbjct: 134 SCKVALNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMDGHAIKVEKY-EKNYKIKTGSR 192
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NV+ KN TTTE ++K IF G ++S DG + FGF N+++ DA R+
Sbjct: 193 A-FTNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLRGFGFANYENATDAQRA 251
Query: 276 VEALNGKK-FDDKE---WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
++ L+GK F+ K +YV +AQ K +R L FE+ L + ++ NLYV L +
Sbjct: 252 IDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEK-LSMSGLNYKR-NLYVTRLPN 309
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGIS--RGSGFVAFSTAEEASKALTEMNGKMVVS 389
+ ++++ELFS+FG + S V +D N ++ + +V FSTA+EAS A+ + N + S
Sbjct: 310 TYGKEEVQELFSQFGKVISVCVGKD-NVVNEDKNWAYVCFSTADEASIAVEKGNEIYIDS 368
Query: 390 KPLYVALAQRKEER 403
+ + + K ER
Sbjct: 369 VKINITYFKSKNER 382
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 141/295 (47%), Gaps = 39/295 (13%)
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV---ATDSL-GQSRGYGFVQFDNE 178
+K +++ +L L+ FST G+I++ K+ A D+ + Y +V F E
Sbjct: 11 KKENNCTVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQE 70
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E A A++KLN ++DK++ V L +ER + D+ N+ +KNLS L
Sbjct: 71 EEALEAVNKLNFFKVHDKEMRV--MLYDKERIKSMDR---GNIVIKNLSADCDSKTLHDT 125
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V ++ GK K FGFV F + + A +++ K+
Sbjct: 126 FSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKAL--------------------KF 165
Query: 299 EREMELKG------KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
EM++ G K+E++ K N++ KN + ++ ++K++F G ++S
Sbjct: 166 GTEMQMDGHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSFY 225
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS----KPLYVALAQRKEER 403
P+G RG GF + A +A +A+ E++GK V +P YV AQ K++R
Sbjct: 226 FAAKPDGTLRGFGFANYENATDAQRAIDELSGKDVFEGKYPEPFYVQQAQTKQQR 280
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 141/305 (46%), Gaps = 40/305 (13%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++ + +L + L+D F+ G+++S +V + S + G+G+V + + A +AL
Sbjct: 107 NIVIKNLSADCDSKTLHDTFSIFGEILSCKVALN-SQGKCKGFGFVQFKNKNGARKALKF 165
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGA---GNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
++G I++ ++ I K+G+ N+F KN + + + D F + G + S
Sbjct: 166 GTEMQMDGHAIKVEKYEKNYKI-KTGSRAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSF 224
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----PFLRKQ------ 207
A G RG+GF ++N A+ AID+L+G K VF G PF +Q
Sbjct: 225 YFAAKPDGTLRGFGFANYENATDAQRAIDELSG-----KDVFEGKYPEPFYVQQAQTKQQ 279
Query: 208 ---------ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGK 257
E+ S + N+YV L T +++++++F +FG + S V +D +
Sbjct: 280 RLDSLSSAFEKLSMSGLNYKRNLYVTRLPNTYGKEEVQELFSQFGKVISVCVGKDNVVNE 339
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME----------LKGK 307
K + +V F D+A+ +VE N D + + + K ERE + LK
Sbjct: 340 DKNWAYVCFSTADEASIAVEKGNEIYIDSVKINITYFKSKNEREQDYINDNMQRYALKTG 399
Query: 308 FEQSL 312
F QS+
Sbjct: 400 FRQSI 404
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 208 ERESTADKTRFNN---VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK----SKC 260
E+ S +KT+ N VYV +LS E DL KIF G I + +++ A + C
Sbjct: 2 EKASKIEKTKKENNCTVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTC 61
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
+ +V F ++A +V LN K DKE V K+ + M+ +G
Sbjct: 62 YAYVLFSQEEEALEAVNKLNFFKVHDKEMRVMLYDKERIKSMD-RG-------------- 106
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL- 379
N+ +KNL L + FS FG I SCKV + G +G GFV F A KAL
Sbjct: 107 --NIVIKNLSADCDSKTLHDTFSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKALK 164
Query: 380 --TEM 382
TEM
Sbjct: 165 FGTEM 169
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 24/192 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR--DLSTRRSLGYGYVNYNAAHEATRA 97
T+++ + L+ + ++ D+F +G+V S D + R G+G+ NY A +A RA
Sbjct: 195 TNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLR---GFGFANYENATDAQRA 251
Query: 98 LDELNFTPL-NGKPIRIMYSYRDPT--------------IRKSGAG---NIFIKNLDKSI 139
+DEL+ + GK Y + T + SG N+++ L +
Sbjct: 252 IDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLNYKRNLYVTRLPNTY 311
Query: 140 DNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + + FS FG ++S V D+ + + + + +V F + A A++K N + ++ ++
Sbjct: 312 GKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEIYIDSVKI 371
Query: 199 FVGPFLRKQERE 210
+ F K ERE
Sbjct: 372 NITYFKSKNERE 383
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 200 bits (508), Expect = 2e-48, Method: Composition-based stats.
Identities = 101/178 (56%), Positives = 132/178 (74%), Gaps = 3/178 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK++FG++G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
M D GKSK FGFV+F+ +DA ++V+ +NGK+ + K YVG+AQKK ER+ ELK KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQTELKRKF 177
Score = 126 bits (317), Expect = 3e-26, Method: Composition-based stats.
Identities = 71/185 (38%), Positives = 109/185 (58%), Gaps = 11/185 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV F+ + A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + + E N+Y+KN + + D++LKE+F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKEVFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
++G S KVM D +G S+G GFV+F E+A KA+ MNGK + K +YV AQ+K ER
Sbjct: 110 KYGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVER 169
Query: 404 RARLQ 408
+ L+
Sbjct: 170 QTELK 174
Score = 107 bits (268), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/172 (34%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D S GYG+V + A RA++++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVXFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN + + + + R + GA N++IKN + +D++ L + F +G LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
TD G+S+G+GFV F+ E A+ A+D +NG LN K ++VG +K ER++
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQT 171
>gi|440493085|gb|ELQ75593.1| Polyadenylate-binding protein (RRM superfamily), partial
[Trachipleistophora hominis]
Length = 513
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 211/374 (56%), Gaps = 15/374 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR---DLSTRRSLGYGYVNYNAAHEAT 95
+ ++YVGDL L +S LY +F+ +G ++++++ + D + Y YV ++ EA
Sbjct: 17 NCTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFSQEEEAL 76
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+++LNF ++ K +R+M Y I+ GNI IKNL D+K LHDTFS FG IL
Sbjct: 77 EAVNKLNFFKVHDKEMRVML-YDKERIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGEIL 135
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA +S G+ +G+GFVQF N+ A+ A+ M ++ + V + K + T +
Sbjct: 136 SCKVAQNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMDGHAIKVEKY-EKNYKIKTGSR 194
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NV+ KN TTTE LK+IF G ++S DG + FGF N+++ DA ++
Sbjct: 195 A-FTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLRGFGFANYENAADAQKA 253
Query: 276 VEALNGKK-FDDKE---WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
++ L+GK F+ K +YV +AQ K +R L FE+ L + ++ NLYV L
Sbjct: 254 IDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLSSAFEK-LSMSGLNYKR-NLYVTRLPS 311
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGIS--RGSGFVAFSTAEEASKALTEMNGKMVVS 389
+ ++++ELFS++G I S V +D N ++ + +V FSTA+EAS A+ + N + S
Sbjct: 312 TYGKEEVEELFSQYGKIISVCVGKD-NVVNEDKNWAYVCFSTADEASIAVEKGNEVYIDS 370
Query: 390 KPLYVALAQRKEER 403
+ V + K ER
Sbjct: 371 VKINVTYFKSKNER 384
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 39/295 (13%)
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL----GQSRGYGFVQFDNE 178
+K +++ +L L+ FST G+I++ K+ + + Y +V F E
Sbjct: 13 KKENNCTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFSQE 72
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E A A++KLN ++DK++ V L +ER + D+ N+ +KNLS L
Sbjct: 73 EEALEAVNKLNFFKVHDKEMRV--MLYDKERIKSMDR---GNIVIKNLSADCDSKTLHDT 127
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +++ GK K FGFV F + + A +++ K+
Sbjct: 128 FSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKAL--------------------KF 167
Query: 299 EREMELKG------KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
EM++ G K+E++ K N++ KN + ++ +LKE+F G ++S
Sbjct: 168 GTEMQMDGHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFY 227
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS----KPLYVALAQRKEER 403
P+G RG GF + A +A KA+ E++GK + +P YV AQ K++R
Sbjct: 228 FATKPDGGLRGFGFANYENAADAQKAIDELSGKDIFEGKYPEPFYVQQAQTKQQR 282
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 143/305 (46%), Gaps = 40/305 (13%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++ + +L + L+D F+ G+++S +V ++ S + G+G+V + + A +AL
Sbjct: 109 NIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQN-SQGKCKGFGFVQFKNKNGARKALKF 167
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGA---GNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
++G I++ ++ I K+G+ N+F KN + + L + F + G + S
Sbjct: 168 GTEMQMDGHAIKVEKYEKNYKI-KTGSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSF 226
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----PFLRKQ------ 207
AT G RG+GF ++N A+ AID+L+G K +F G PF +Q
Sbjct: 227 YFATKPDGGLRGFGFANYENAADAQKAIDELSG-----KDIFEGKYPEPFYVQQAQTKQQ 281
Query: 208 ---------ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGK 257
E+ S + N+YV L T +++++++F ++G I S V +D +
Sbjct: 282 RLDSLSSAFEKLSMSGLNYKRNLYVTRLPSTYGKEEVEELFSQYGKIISVCVGKDNVVNE 341
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME----------LKGK 307
K + +V F D+A+ +VE N D + V + K ERE + LK
Sbjct: 342 DKNWAYVCFSTADEASIAVEKGNEVYIDSVKINVTYFKSKNEREQDYINDNMQRYALKTG 401
Query: 308 FEQSL 312
F QS+
Sbjct: 402 FRQSI 406
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 208 ERESTADKTRFNN---VYVKNLSETTTEDDLKKIFGEFGIITSTA----VMRDADGKSKC 260
E+ S +KT+ N VYV +LS T E DL KIF G I + VM + + C
Sbjct: 4 EKASKIEKTKKENNCTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTC 63
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
+ +V F ++A +V LN K DKE V K+ + M+ +G
Sbjct: 64 YAYVLFSQEEEALEAVNKLNFFKVHDKEMRVMLYDKERIKSMD-RG-------------- 108
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL- 379
N+ +KNL L + FS FG I SCKV ++ G +G GFV F A KAL
Sbjct: 109 --NIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKALK 166
Query: 380 --TEM 382
TEM
Sbjct: 167 FGTEM 171
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 199 bits (506), Expect = 4e-48, Method: Composition-based stats.
Identities = 101/178 (56%), Positives = 131/178 (73%), Gaps = 3/178 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
M D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ E K KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEXKRKF 177
Score = 128 bits (322), Expect = 9e-27, Method: Composition-based stats.
Identities = 72/181 (39%), Positives = 109/181 (60%), Gaps = 11/181 (6%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + + E N+Y+KN + + D++LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+FG S KVM D +G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 404 R 404
+
Sbjct: 170 Q 170
Score = 114 bits (284), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/179 (36%), Positives = 105/179 (58%), Gaps = 9/179 (5%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D S GYG+V++ A RA++++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN + + + + R + GA N++IKN + +D++ L D F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER+ T K +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ-TEXKRKF 177
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLD SI + L + FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 387 VVSKPLYVALAQRKEERRARL 407
+ + ++V + ++ER A L
Sbjct: 60 LNDRKVFVGRFKSRKEREAEL 80
Score = 53.9 bits (128), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 84 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 140
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+DE+N LNGK I +
Sbjct: 141 AQKAVDEMNGKELNGKQIYV 160
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/130 (75%), Positives = 110/130 (84%), Gaps = 7/130 (5%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
EQ+ E ADKF+G NLY+KNLDDSI DDKLK+LFS+FG+ITSCKVMRDPNGISRGSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR-----PPVGPRMP 421
F+T EEAS+A+ EMNGKMVVSKPL+VALAQRKE+RRARL QFSQ+R P V RMP
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQIRPVAMAPSVASRMP 120
Query: 422 MYPPVAPGLG 431
MYPP PG G
Sbjct: 121 MYPPCGPGHG 130
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 66/105 (62%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
+Q ADK + N+Y+KNL ++ +D LK++F +FG ITS VMRD +G S+ GFV
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
F P++A+R++ +NGK K +V AQ+K +R L+ +F Q
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQ 105
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 52/84 (61%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
N+++KNLD SID+ L FS FG+I SCKV D G SRG GFV F E A AI +
Sbjct: 14 ANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 188 LNGMLLNDKQVFVGPFLRKQERES 211
+NG ++ K +FV RK++R +
Sbjct: 74 MNGKMVVSKPLFVALAQRKEDRRA 97
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A +F +LY+ +LD S++D +L LF+Q G + S +V RD S G G+V + E
Sbjct: 8 ADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRD-PNGISRGSGFVAFTTPEE 66
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A+RA+ E+N + KP+ + + R
Sbjct: 67 ASRAILEMNGKMVVSKPLFVALAQR 91
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 137/188 (72%), Gaps = 1/188 (0%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
+G I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFVQFD+EE+A++AI+
Sbjct: 127 SGKIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIE 186
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
K+NG+L N ++V V ++ +++RE T+F N+YVKN +E +E ++K++F +G IT
Sbjct: 187 KVNGILCNSQKVHVVKYIPRRDREQE-KATQFRNLYVKNFNEDFSEQNMKEMFEPYGRIT 245
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S +M D +G+SK FGFV F++P A +V ALNGK+ DK YV +A K ER+ E+
Sbjct: 246 SHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINR 305
Query: 307 KFEQSLKE 314
K E+ ++
Sbjct: 306 KLEERKRQ 313
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 98/187 (52%), Gaps = 13/187 (6%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D G S+ +GFV FD + A ++E +N
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G + ++ +V K + +RE E +F NLYVKN ++ S+ +KE
Sbjct: 190 GILCNSQKVHVVKYIPRRDREQEKATQFR-------------NLYVKNFNEDFSEQNMKE 236
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
+F +G ITS K+M D G S+ GFVAF + A A+ +NGK + K LYVA A K
Sbjct: 237 MFEPYGRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSK 296
Query: 401 EERRARL 407
ER+ +
Sbjct: 297 IERQQEI 303
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 101/180 (56%), Gaps = 4/180 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S +Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V +++ A A+
Sbjct: 127 SGKIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKD-EHGNSRGYGFVQFDSEEAARAAI 185
Query: 99 DELNFTPLNGKPIRIMYSY--RDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+++N N + + ++ RD K+ N+++KN ++ + + + F +G I
Sbjct: 186 EKVNGILCNSQKVHVVKYIPRRDREQEKATQFRNLYVKNFNEDFSEQNMKEMFEPYGRIT 245
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S K+ TD G+S+ +GFV F+N +SA +A+ LNG L DK ++V L K ER+ ++
Sbjct: 246 SHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINR 305
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 225/436 (51%), Gaps = 43/436 (9%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ ++YVGDL +S L+ +F+ +G+VV +++ + + S + +V + A RA
Sbjct: 10 IFATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLSS--FAFVTFANGDAADRA 67
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ E N LN K IR++ + + R+ N+ +KNL S N+ L+DTFS FG I+S
Sbjct: 68 IKEYNNFRLNKKNIRVLPCMDEKSKREDA--NLIVKNLPSSFTNENLYDTFSVFGTIISA 125
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF----LRKQERESTA 213
K+AT + G+ + YGFVQFD ++SAK AI +G L++K + V F RKQE ++
Sbjct: 126 KIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQEEQALE 185
Query: 214 DK-----TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV-MRDADGKSKCFGFVNFD 267
+K +F N ++KN E+ TE DL+ + ++G ITS ++D SK F F NF+
Sbjct: 186 NKPVKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFAFANFE 245
Query: 268 DPDDAARSVEALNGKK---FDDKEW-------YVGKAQKKYEREMELKGKFEQ-SLKETA 316
+ A +++ L+GK+ F++ + Y+ KAQKK ERE LK FEQ SL+
Sbjct: 246 SHESAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQLSLEGQN 305
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
K NLY+ N+ I D + E+FSEFG+I S + D R +V +ST++EA
Sbjct: 306 IK---RNLYITNIPAFIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYSTSDEAF 362
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFY 436
A+ + N + + L V + K ER S + + +P F
Sbjct: 363 IAIEKGNELFIDNNKLNVTYFKNKAERTKEKMMSSIN--INSTVP-------------FI 407
Query: 437 GQGPPIIPPQPGFGYQ 452
P I P F Y+
Sbjct: 408 YSSPLKITPNSSFNYE 423
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 196 bits (499), Expect = 3e-47, Method: Composition-based stats.
Identities = 100/177 (56%), Positives = 129/177 (72%), Gaps = 3/177 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+D FS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK++FG FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
M D GKSK FGFV+F+ +DA ++V +NGK+ + K+ YVG+AQKK ER+ ELK K
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTELKRK 176
Score = 131 bits (329), Expect = 1e-27, Method: Composition-based stats.
Identities = 74/185 (40%), Positives = 110/185 (59%), Gaps = 11/185 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + + E N+Y+KN + + D++LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKELFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
FG S KVM D +G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVER 169
Query: 404 RARLQ 408
+ L+
Sbjct: 170 QTELK 174
Score = 108 bits (271), Expect = 6e-21, Method: Composition-based stats.
Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 8/172 (4%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D S GYG+V++ A RA++++N
Sbjct: 2 NLDKSIDNKALYDXFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN + + + + R + GA N++IKN + +D++ L + F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
TD G+S+G+GFV F+ E A+ A+ ++NG LN KQ++VG +K ER++
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQT 171
Score = 48.9 bits (115), Expect = 0.009, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF G +SV+V D S +S G+G+V++ +
Sbjct: 84 AKEF--TNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESG-KSKGFGFVSFERHED 140
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+ E+N LNGK I +
Sbjct: 141 AQKAVXEMNGKELNGKQIYV 160
>gi|405963265|gb|EKC28854.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 172
Score = 193 bits (491), Expect = 2e-46, Method: Composition-based stats.
Identities = 93/159 (58%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDL V + LY+ F+ G V+S+RVCR L TRRSLGY YV++ +A AL+
Sbjct: 15 TSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALN 74
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N+ + G+PIRI + RDP+ RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCK+
Sbjct: 75 TMNYDTIKGQPIRITWYQRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKI 134
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
D G RGYGFV F+ EESA AI+++NG +L+ K+V
Sbjct: 135 VCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLHGKKV 172
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 28/177 (15%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TED L + F G + S V R +S + +V+F +DA ++
Sbjct: 16 SLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALNT 75
Query: 279 LNGKKFDDK----EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSI 333
+N + WY ++ + + G+ N+++KNLD SI
Sbjct: 76 MNYDTIKGQPIRITWY---------------------QRDPSPRKSGVGNVFIKNLDKSI 114
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+ L + FS FG I SCK++ D +G RG GFV F E A+ A+ +NG M+ K
Sbjct: 115 DNKALYDTFSAFGNILSCKIVCDEHGF-RGYGFVHFEKEESATIAIERVNGTMLHGK 170
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FST G +LS +V + S GY +V F + E A++A++
Sbjct: 16 SLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALNT 75
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + + + + + +R+ + K+ NV++KNL ++ L F FG I S
Sbjct: 76 MNYDTIKGQPIRITWY----QRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 131
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
++ D G + +GFV+F+ + A ++E +NG K+
Sbjct: 132 CKIVCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLHGKK 171
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/130 (74%), Positives = 107/130 (82%), Gaps = 7/130 (5%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
EQ+ E ADKF+G NLY+KNLD SI DDKLK+LFS+FG+ITSCKVMRDPNGISRGSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR-----PPVGPRMP 421
F+T EEAS+A+ EMNGKMVV KPLYVALAQRKE RRARL QFSQ+R P V RMP
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQIRPVAMAPSVASRMP 120
Query: 422 MYPPVAPGLG 431
MYPP PG G
Sbjct: 121 MYPPCGPGHG 130
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
+Q ADK + N+Y+KNL + +D LK++F +FG ITS VMRD +G S+ GFV
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
F P++A+R++ +NGK K YV AQ+K R L+ +F Q
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQ 105
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
N+++KNLD SID+ L FS FG+I SCKV D G SRG GFV F E A AI +
Sbjct: 14 ANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 188 LNGMLLNDKQVFVGPFLRKQERES 211
+NG ++ K ++V RK+ R +
Sbjct: 74 MNGKMVVGKPLYVALAQRKEVRRA 97
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A +F +LY+ +LD S++D +L LF+Q G + S +V RD S G G+V + E
Sbjct: 8 ADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRD-PNGISRGSGFVAFTTPEE 66
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
A+RA+ E+N + GKP+ + + R R
Sbjct: 67 ASRAILEMNGKMVVGKPLYVALAQRKEVRR 96
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 192 bits (488), Expect = 5e-46, Method: Composition-based stats.
Identities = 98/175 (56%), Positives = 128/175 (73%), Gaps = 3/175 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK++FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
M D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 174
Score = 125 bits (314), Expect = 6e-26, Method: Composition-based stats.
Identities = 72/185 (38%), Positives = 108/185 (58%), Gaps = 11/185 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + + E N+Y+KN + + D++LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKELFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
S KVM D +G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER
Sbjct: 110 XXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 404 RARLQ 408
+ L+
Sbjct: 170 QTELK 174
Score = 105 bits (263), Expect = 5e-20, Method: Composition-based stats.
Identities = 60/172 (34%), Positives = 100/172 (58%), Gaps = 8/172 (4%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D S GYG+V++ A RA++++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN + + + + R + GA N++IKN + +D++ L + F LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 171
Score = 48.5 bits (114), Expect = 0.012, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF +SV+V D S +S G+G+V++ +
Sbjct: 84 AKEF--TNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESG-KSKGFGFVSFERHED 140
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+DE+N LNGK I +
Sbjct: 141 AQKAVDEMNGKELNGKQIYV 160
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 192 bits (488), Expect = 5e-46, Method: Composition-based stats.
Identities = 97/178 (54%), Positives = 129/178 (72%), Gaps = 3/178 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+DTFS FGNILSCKV D G S+GY FV F+ +++A AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN + ++ LK++F ++G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
M D+ GKSK FGFV+F+ +DA ++VE +NGK + K +VG+AQKK ER+ ELK KF
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAELKRKF 177
Score = 134 bits (338), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/185 (40%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK + FV+F+ D A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + + E N+Y+KN D + D++LKE+FS
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGDDMDDERLKEMFS 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
++G S KVM D G S+G GFV+F E+A+KA+ EMNGK V K ++V AQ+K ER
Sbjct: 110 KYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVER 169
Query: 404 RARLQ 408
+A L+
Sbjct: 170 QAELK 174
Score = 108 bits (271), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/172 (35%), Positives = 100/172 (58%), Gaps = 8/172 (4%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D S GY +V++ A RA++++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKMNGML 59
Query: 106 LNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN + + + + R + GA N++IKN +D++ L + FS +G LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
TDS G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQA 171
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/191 (50%), Positives = 137/191 (71%), Gaps = 2/191 (1%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
+G I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+
Sbjct: 101 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 160
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
K+NGML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G IT
Sbjct: 161 KVNGMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 219
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELK 305
S +M D +G+S+ FGFV F++P A +V L+GK+ D+K YV +A K ER+ E+
Sbjct: 220 SHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 279
Query: 306 GKFEQSLKETA 316
K E+ ++ A
Sbjct: 280 RKLEERKRQKA 290
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 102/188 (54%), Gaps = 14/188 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 164 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 210
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-VSKPLYVALAQR 399
+F +G ITS K+M D G SR GFVAF + A A+ ++GK + +K LYVA A
Sbjct: 211 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 270
Query: 400 KEERRARL 407
K ER+ +
Sbjct: 271 KAERQQEI 278
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 101/181 (55%), Gaps = 5/181 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S +Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A+
Sbjct: 101 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAI 159
Query: 99 DELNFTPLNGKPIRIMYSY--RDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+++N N + + ++ RD K+ N+++KNL + + L + F +G I
Sbjct: 160 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 219
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTAD 214
S K+ D G+SR +GFV F+N +SA +A+ L+G L D K ++V L K ER+ +
Sbjct: 220 SHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 279
Query: 215 K 215
+
Sbjct: 280 R 280
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 191 bits (485), Expect = 1e-45, Method: Composition-based stats.
Identities = 97/175 (55%), Positives = 127/175 (72%), Gaps = 3/175 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSJDNKAL+D FS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK++FG FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
M D GKSK FGFV+F+ +DA ++V +NGK+ + K+ YV +AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQTELK 174
Score = 127 bits (320), Expect = 1e-26, Method: Composition-based stats.
Identities = 73/185 (39%), Positives = 108/185 (58%), Gaps = 11/185 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +NG
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE L + + E N+Y+KN + + D++LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAK----------EFTNVYIKNFGEDMDDERLKELFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
FG S KVM D +G S+G GFV+F E+A KA+ EMNGK K +YV AQ+K ER
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVER 169
Query: 404 RARLQ 408
+ L+
Sbjct: 170 QTELK 174
Score = 103 bits (258), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/173 (33%), Positives = 100/173 (57%), Gaps = 10/173 (5%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D S GYG+V++ A RA++++N
Sbjct: 2 NLDKSJDNKALYDXFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
LN + + + ++ R++ G N++IKN + +D++ L + F FG LS K
Sbjct: 60 LNDRKV-FVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVK 118
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
V TD G+S+G+GFV F+ E A+ A+ ++NG N KQ++V +K ER++
Sbjct: 119 VMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQT 171
Score = 46.6 bits (109), Expect = 0.041, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF G +SV+V D S +S G+G+V++ +
Sbjct: 84 AKEF--TNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESG-KSKGFGFVSFERHED 140
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+ E+N NGK I +
Sbjct: 141 AQKAVXEMNGKEXNGKQIYV 160
>gi|62321231|dbj|BAD94406.1| putative poly(A) binding protein [Arabidopsis thaliana]
Length = 154
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/162 (62%), Positives = 126/162 (77%), Gaps = 15/162 (9%)
Query: 494 IPLMQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTG 552
+P MQP+M+PRGR YRYP G N+PD P+ PGGM+P YD+ MP+ SQPM G
Sbjct: 1 MPYMQPQMMPRGRGYRYPSGGRNMPDGPM---PGGMVPVAYDMNVMPY-----SQPMSAG 52
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
LA++LANA+P QQRTLLGE+LYPLVDQ+E ++AAKVTGMLLEMDQTEVLHLLESPEAL
Sbjct: 53 QLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALN 112
Query: 613 AKVAEAMEVLRNVAQQQATGP------SPTDRVASLSLNDNI 648
AKV+EA++VLRNV Q + G SP+D +ASLS+ND++
Sbjct: 113 AKVSEALDVLRNVNQPSSQGSEGNKSGSPSDLLASLSINDHL 154
>gi|2213871|gb|AAB61594.1| poly(A)-binding protein, partial [Mesembryanthemum crystallinum]
Length = 176
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/178 (65%), Positives = 138/178 (77%), Gaps = 9/178 (5%)
Query: 477 PGGRRSGTGPMQQAQQPIPLMQPRMLP-RGRIYRYPPGCNIPDVPVAGVPGGMLPG-PYD 534
P GRR+G P+QQ+QQ M + + RGR YRYPP +PD P+ GV GG+LPG YD
Sbjct: 1 PTGRRAGGAPVQQSQQQPIPMMQQQMMPRGR-YRYPPARGLPDAPLPGVTGGVLPGVQYD 59
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
+GGMP RD + + P+ G LA+ LANA+PEQQR LLGENLYPLV+QLE + AAKVTGMLL
Sbjct: 60 MGGMPIRDLSPTVPV--GTLATLLANATPEQQRLLLGENLYPLVEQLEPEMAAKVTGMLL 117
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLRNVA--QQQATGPS--PTDRVASLSLNDNI 648
EMDQTEVLHLLESPEALK+KVAEAMEVLRNVA QQQ PS P D++A+LSLNDN+
Sbjct: 118 EMDQTEVLHLLESPEALKSKVAEAMEVLRNVAQQQQQQQQPSSNPADQLAALSLNDNL 175
>gi|440857933|gb|ELR44433.1| hypothetical protein M91_06292, partial [Bos grunniens mutus]
Length = 149
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 114/150 (76%), Gaps = 1/150 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKVA
Sbjct: 61 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 120
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
D G +GYGFV F +ESA+ AID +NG
Sbjct: 121 CDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 61 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 116
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
V D G K +GFV+F + A R+++A+NG
Sbjct: 117 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 61 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 104
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
+FS FG I SCKV D G +G GFV F E A +A+ MNG
Sbjct: 105 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA+++TFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV F++P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 287
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 288 EERKRQKA 295
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 14/188 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + + F FG I + V +D +G S+ +GFV+FD + A ++E +N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 215
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVAF + A A+ ++GK + +K LYVA A
Sbjct: 216 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALS 275
Query: 400 KEERRARL 407
K ER+ +
Sbjct: 276 KAERQQEI 283
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +Y+ F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKD-EEGNSRGYGFVHFDSEEAARAAIEKV 167
Query: 102 NFTPLNGKPIRIMYSY--RDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 168 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV F+N +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 285
>gi|147864210|emb|CAN80948.1| hypothetical protein VITISV_016699 [Vitis vinifera]
Length = 183
Score = 189 bits (481), Expect = 3e-45, Method: Composition-based stats.
Identities = 94/142 (66%), Positives = 109/142 (76%), Gaps = 3/142 (2%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
+NGG Q STSLYVG L+ +V DS L+DLF Q+G VVSV++C DLSTRRSL YG V
Sbjct: 8 SNGG---ENQLXSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCV 64
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
N+ + RALD LNFT LNGKP RIMYS+ DP++RKSG GNIFIKNLDK +D+KALHD
Sbjct: 65 NHGNPQDTARALDVLNFTLLNGKPTRIMYSHCDPSVRKSGTGNIFIKNLDKRVDHKALHD 124
Query: 147 TFSTFGNILSCKVATDSLGQSR 168
TFS FGNILSCKVA D+ G R
Sbjct: 125 TFSAFGNILSCKVAADASGSYR 146
Score = 59.7 bits (143), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV L T+ L +FG+ G + S + D + +S +G VN +P D AR+++
Sbjct: 19 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALDV 78
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + K + + + S++++ N+++KNLD + L
Sbjct: 79 LNFTLLNGKPTRI------------MYSHCDPSVRKSGTG----NIFIKNLDKRVDHKAL 122
Query: 339 KELFSEFGTITSCKVMRDPNGISR 362
+ FS FG I SCKV D +G R
Sbjct: 123 HDTFSAFGNILSCKVAADASGSYR 146
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ L+ ++ + L D F G ++S ++ D S +S YG V N + A+D
Sbjct: 19 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALDV 78
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN LLN K + + + K+ N+++KNL + L F FG I S
Sbjct: 79 LNFTLLNGKPTRI----MYSHCDPSVRKSGTGNIFIKNLDKRVDHKALHDTFSAFGNILS 134
Query: 248 TAVMRDADGKSK 259
V DA G +
Sbjct: 135 CKVAADASGSYR 146
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV +++P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 14/188 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVA+ + A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 400 KEERRARL 407
K ER+ +
Sbjct: 282 KAERQQEI 289
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 102 NFTPLNGKPIRIMYSY--RDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV ++N +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
+Y+KNL+ SI + + + FS FG I +C V +D +G SRG GFV F + E A A+ ++N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 384 GKMVVSKPLYVA--LAQRKEERRARLQFSQM 412
G + ++ ++V + +R E+ F +
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFKNL 205
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV +++P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 14/188 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVA+ + A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 400 KEERRARL 407
K ER+ +
Sbjct: 282 KAERQQEI 289
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 102 NFTPLNGKPIRIMYSY--RDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV ++N +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA+++TFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV F++P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINRKL 290
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 291 EERKRQKA 298
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 14/188 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + + F FG I + V +D +G S+ +GFV+FD + A ++E +N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 218
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVAF + A A+ ++GK + +K LYVA A
Sbjct: 219 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 278
Query: 400 KEERRARL 407
K ER+ +
Sbjct: 279 KNERQQEI 286
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +Y+ F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKD-EEGNSRGYGFVHFDSEEAARAAIEKV 170
Query: 102 NFTPLNGKPIRIMYSY--RDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 171 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV F+N +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINR 288
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV +++P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 14/188 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-VSKPLYVALAQR 399
+F +G ITS K+M D G SR GFVA+ + A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 400 KEERRARL 407
K ER+ +
Sbjct: 282 KAERQQEI 289
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 102 NFTPLNGKPIRIMYSY--RDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV ++N +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 134/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV F+ P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 286
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 287 EERKRQKA 294
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 14/188 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 214
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVAF + + A A+ ++GK + +K LYVA A
Sbjct: 215 MFEPYGRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 274
Query: 400 KEERRARL 407
K ER+ +
Sbjct: 275 KAERQQEI 282
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 166
Query: 102 NFTPLNGKPIRIMYSY--RDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 167 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV F++ +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 284
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 134/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV F+ P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 283
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 284 EERKRQKA 291
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 14/188 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 211
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-VSKPLYVALAQR 399
+F +G ITS K+M D G SR GFVAF + + A A+ ++GK + +K LYVA A
Sbjct: 212 MFEPYGRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 271
Query: 400 KEERRARL 407
K ER+ +
Sbjct: 272 KAERQQEI 279
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 163
Query: 102 NFTPLNGKPIRIMYSY--RDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 164 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV F++ +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 281
>gi|387594015|gb|EIJ89039.1| hypothetical protein NEQG_00858 [Nematocida parisii ERTm3]
gi|387595783|gb|EIJ93406.1| hypothetical protein NEPG_01748 [Nematocida parisii ERTm1]
Length = 512
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 231/459 (50%), Gaps = 36/459 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNYNAAHEATRALD 99
++YVGD+ ++ +S+L+ +F+++GQ+ ++ + R ++S + Y YV + A++
Sbjct: 20 TIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYAYVTFFDESSVPIAIE 79
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
NF L+G IR+M + ++ + GNI IKNL K DN+ L+DTF FG ILSCKV
Sbjct: 80 TFNFYSLHGSQIRVM-PFNKESVVGNREGNIVIKNLPKETDNQTLYDTFIVFGPILSCKV 138
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL----RKQERESTADK 215
++L + G G++Q+ + + A+ AI +N ++LN K++ + R+++RE+ A
Sbjct: 139 VKNNLSECTGVGYIQYKDPKVAEVAIQMINKIVLNGKKLCATQCIPNDKREKKRENVAK- 197
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F N+YVKN TE++++ E+G +TS R G+ + F F N+ + AA +
Sbjct: 198 -IFTNIYVKNFPAGITEEEIEAKLKEYGELTSFLAPRTDSGEMRGFAFANYQTHEMAAAA 256
Query: 276 VEALNGKKF-----DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
+EAL+ K F + YV +A+ K ER E+ F Q + + N+Y+ NL
Sbjct: 257 IEALHDKPFPGYPEGTENLYVQRAKLKNERVEEMLEYFSQVPEHERRR----NIYITNLP 312
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
++++ + + FS++G I + K+ D +R G+V + AE+A+KA+ N +
Sbjct: 313 GELNEEDVVKYFSKYGPIVTYKLGTDAKN-NRSYGYVFYQKAEDAAKAVELANKSEYCEQ 371
Query: 391 PLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPG-- 448
L VA + K ++R P +Y A G+G P
Sbjct: 372 TLDVAFFKCK----------KLRELGKPTYNIYNTAAGNGAYDPANGKGKKKAHVSPAAQ 421
Query: 449 -----FGYQ-QQLVPGMRPNYFVPMVQPGQQNQRPGGRR 481
GYQ L+ + PNY + Q G N+ ++
Sbjct: 422 DNGCTAGYQLYTLILSLAPNYTEKISQAGFANEEEFAKK 460
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 19/176 (10%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG--KSKCFGFVNFDDPDDAARSV 276
N +YV ++ TTE +L +IF + G I + +++R K KC+ +V F D ++
Sbjct: 19 NTIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYAYVTFFDESSVPIAI 78
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E N + V K + EG N+ +KNL +
Sbjct: 79 ETFNFYSLHGSQIRVMPFNK----------------ESVVGNREG-NIVIKNLPKETDNQ 121
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
L + F FG I SCKV+++ G G++ + + A A+ +N ++ K L
Sbjct: 122 TLYDTFIVFGPILSCKVVKNNLSECTGVGYIQYKDPKVAEVAIQMINKIVLNGKKL 177
>gi|296081049|emb|CBI18330.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 188 bits (478), Expect = 7e-45, Method: Composition-based stats.
Identities = 93/143 (65%), Positives = 108/143 (75%), Gaps = 3/143 (2%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
+NGG Q VSTSLYVG L+ +V DS L+DLF Q+G VVSV++C DLSTRRSL YG V
Sbjct: 5 SNGG---ENQLVSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCV 61
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
N+ + RALD LNFT LNGKP RIMYS+ DP++RKSG NIFIKNLDK +D+KAL D
Sbjct: 62 NHGNPQDTVRALDVLNFTHLNGKPTRIMYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRD 121
Query: 147 TFSTFGNILSCKVATDSLGQSRG 169
TFSTFGNI SCKVA D+ G G
Sbjct: 122 TFSTFGNIFSCKVAADASGSYSG 144
Score = 62.0 bits (149), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV L T+ L +FG+ G + S + D + +S +G VN +P D R+++
Sbjct: 16 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDV 75
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + K + + + S++++ + N+++KNLD + L
Sbjct: 76 LNFTHLNGKPTRI------------MYSHCDPSVRKSGTR----NIFIKNLDKRVDHKAL 119
Query: 339 KELFSEFGTITSCKVMRDPNGISRG 363
++ FS FG I SCKV D +G G
Sbjct: 120 RDTFSTFGNIFSCKVAADASGSYSG 144
Score = 52.4 bits (124), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ L+ ++ + L D F G ++S ++ D S +S YG V N + A+D
Sbjct: 16 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDV 75
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN LN K + + + K+ N+++KNL + L+ F FG I S
Sbjct: 76 LNFTHLNGKPTRI----MYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRDTFSTFGNIFS 131
Query: 248 TAVMRDADG 256
V DA G
Sbjct: 132 CKVAADASG 140
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 203/383 (53%), Gaps = 22/383 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S ++YVGDL DS L+ +F+ +G+++++++ + + S + +V + +A +A+
Sbjct: 13 SLTIYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGESAPS--FAFVTFENEEDAEKAV 70
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E L+ + IR+M P GNIF+KNL +S +K L D FS FG I+SCK
Sbjct: 71 REYKHYELHDRQIRVMRKDERP----PETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCK 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAI---DKLNGMLLNDKQVFV---GPFLRKQEREST 212
VAT G+S+GYGFVQF + SAK I + LNG++L ++ V P ++K E +
Sbjct: 127 VATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKV 186
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+ T F N ++KN + E +L + ++G +TS DGK K F F NF+ + A
Sbjct: 187 S--TMFTNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESA 244
Query: 273 ARSVEALNGK-KFDDKE-----WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
++ L+G FD+ + +Y+ K QK+ ER L+ FEQ L ++ NLY+
Sbjct: 245 LNAINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQ-LSMQGQNYKK-NLYI 302
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
N+ + ++L +F EFG+ITS V D + ++ +ST EEAS A+ N
Sbjct: 303 TNIPEGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGNEIY 362
Query: 387 VVSKPLYVALAQRKEERRARLQF 409
+ L VA + K ER +F
Sbjct: 363 LDGNRLQVAYFKNKLERMKEKEF 385
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
ES K+ +YV +L T + DL +IF G I + +++ + + F FV F++
Sbjct: 5 ESKRAKSDSLTIYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGES-APSFAFVTFENE 63
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
+DA ++V + D++ V +K ER E N++VKNL
Sbjct: 64 EDAEKAVREYKHYELHDRQIRV---MRKDERPPETG-----------------NIFVKNL 103
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS---TAEEASKALTEMNGKM 386
+S + L + FS FG I SCKV P G S+G GFV F +A++ K +NG M
Sbjct: 104 PESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLM 163
Query: 387 VVSKPLYVAL 396
+ + V L
Sbjct: 164 LGGNKIVVEL 173
>gi|162605986|ref|XP_001713508.1| polyadenylate-binding protein [Guillardia theta]
gi|13794428|gb|AAK39803.1|AF165818_11 polyadenylate-binding protein [Guillardia theta]
Length = 389
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 156/260 (60%), Gaps = 4/260 (1%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVGDL++S+ D L +F + ++ +R+C+D+ + SLGY YV +N+ A +AL+++
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 102 NF---TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
NF T L PIRIM+ + +IRKSG GN+FIKNL + K LH FS +G ILS K
Sbjct: 66 NFYSDTELFKTPIRIMWKNNNNSIRKSGYGNLFIKNLPYNFSPKDLHSLFSEYGEILSSK 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ D+ G S GYGFV + + A SAI+ LNG L+++K + V FL K +RE + F
Sbjct: 126 IKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLNKSQRERISSCDLF 185
Query: 219 NNVYVKNL-SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
N+YVKNL + +E + +FG FG ITS + + K F ++NF++ +DA ++
Sbjct: 186 TNIYVKNLPVDKLSEKVIFNLFGVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAII 245
Query: 278 ALNGKKFDDKEWYVGKAQKK 297
+N +K K V KA K
Sbjct: 246 TMNNRKIAGKSLIVCKAINK 265
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 16/238 (6%)
Query: 165 GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYV 223
G S GY +V F++ SAK A++ +N +D ++F P + + ++ K+ + N+++
Sbjct: 42 GNSLGYSYVYFNSYSSAKKALNDMN--FYSDTELFKTPIRIMWKNNNNSIRKSGYGNLFI 99
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL + DL +F E+G I S+ + D +G S +GFV++ + DA ++ LNGK
Sbjct: 100 KNLPYNFSPKDLHSLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKL 159
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL-DDSISDDKLKELF 342
+K V K +RE + D F N+YVKNL D +S+ + LF
Sbjct: 160 ISNKMITVKHFLNKSQRERI----------SSCDLFT--NIYVKNLPVDKLSEKVIFNLF 207
Query: 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FG ITS + N I +G ++ F E+A +A+ MN + + K L V A K
Sbjct: 208 GVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAIITMNNRKIAGKSLIVCKAINK 265
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 94/183 (51%), Gaps = 8/183 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++ +L + + L+ LF++ G+++S ++ D + SLGYG+V+Y +A A++
Sbjct: 96 NLFIKNLPYNFSPKDLHSLFSEYGEILSSKIKYD-NEGSSLGYGFVHYKEMKDAISAINN 154
Query: 101 LNFTPLNGKPIRIMY----SYRDPTIRKSGAGNIFIKNL--DKSIDNKALHDTFSTFGNI 154
LN ++ K I + + S R+ NI++KNL DK + K + + F FG I
Sbjct: 155 LNGKLISNKMITVKHFLNKSQRERISSCDLFTNIYVKNLPVDK-LSEKVIFNLFGVFGKI 213
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
S + +G+ ++ F+N E A+ AI +N + K + V + K + ++
Sbjct: 214 TSIFIPLWYNSIPKGFAYINFENHEDAEEAIITMNNRKIAGKSLIVCKAINKIKIDTINK 273
Query: 215 KTR 217
K+R
Sbjct: 274 KSR 276
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 14/184 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L+ + + DL++IF + I+ + +D G S + +V F+ A +++ +
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + D E + + ++ S++++ NL++KNL + S L
Sbjct: 66 NF--YSDTELFKTPIRIMWKNN-------NNSIRKSGYG----NLFIKNLPYNFSPKDLH 112
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
LFSE+G I S K+ D G S G GFV + ++A A+ +NGK++ +K + V
Sbjct: 113 SLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLN 172
Query: 400 KEER 403
K +R
Sbjct: 173 KSQR 176
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 187 bits (475), Expect = 1e-44, Method: Composition-based stats.
Identities = 92/153 (60%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV
Sbjct: 1 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTT 231
F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E
Sbjct: 60 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDME 119
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
++ L++IF +FG S VM D GKS+ FGFV
Sbjct: 120 DEKLREIFSKFGPALSIRVMTDDGGKSRSFGFV 152
Score = 105 bits (262), Expect = 7e-20, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ + K+ N+++KNL ++ L F FG I S V+ D +G SK +GFV+F+
Sbjct: 4 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ A R++E +NG +D++ +VG+ + + ERE E+ + + E N+Y+K
Sbjct: 63 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAK----------EFTNVYIK 112
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
N + + D+KL+E+FS+FG S +VM D G SR GFV
Sbjct: 113 NFGEDMEDEKLREIFSKFGPALSIRVMTDDGGKSRSFGFV 152
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D S GYG+V++ A RA+++
Sbjct: 16 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEK 73
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + ++++ L + FS FG
Sbjct: 74 MNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMEDEKLREIFSKFGPA 133
Query: 155 LSCKVATDSLGQSRGYGFV 173
LS +V TD G+SR +GFV
Sbjct: 134 LSIRVMTDDGGKSRSFGFV 152
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+++KNLD SI + L + FS FG I SCKV+ D NG S+G GFV F T E A +A+ +M
Sbjct: 16 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 74
Query: 383 NGKMVVSKPLYVALAQRKEERRARL 407
NG ++ + ++V + ++ER A +
Sbjct: 75 NGMLLNDRKVFVGRFKSRKEREAEM 99
>gi|300120548|emb|CBK20102.2| unnamed protein product [Blastocystis hominis]
Length = 534
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 166/585 (28%), Positives = 268/585 (45%), Gaps = 79/585 (13%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
L + F + G+V + V D +T++S YGYV+++ A EA +AL+ NF L GK +R+M
Sbjct: 5 LEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRVMR 64
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQ 174
+ GN+F+KNL + NK L D FS +GNILSCKVA D G+S YG+V
Sbjct: 65 QQLRFKQTCNPKGNLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVH 124
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDD 234
F + + + +N ++ + ++V + K+ +++++D + YV N T TED
Sbjct: 125 FSDPNVTQKVLADMNKDVVEEGAMYVMEY-EKRMKDTSSD---WVTCYVANFPTTLTEDG 180
Query: 235 LKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-----DDKEW 289
L+ +FG++G I S + K GFV F + D A ++VE L + +
Sbjct: 181 LRDLFGKYGTINSVYIGYKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVL 240
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YV + Q + ER + E+ KE ++ +G LYV D +I+ ++L+E+F +G I
Sbjct: 241 YVNRLQSREERASINQKILEEKKKEEVERTKGRFLYVGFGDQTITLERLREIFQAYGNIE 300
Query: 350 SCKVMRDPNGIS-RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
SC + RD N + GFV T E A A+ + L V LAQ +EER L+
Sbjct: 301 SCSIARDKNTKELKPFGFVCMDTTENAQNAIRAFRESHDLK--LKVELAQTREERAKMLK 358
Query: 409 FSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMV 468
+ R + YP V + PI GM
Sbjct: 359 --ERRKQTQGVVMQYPVVQYTM----------PI---------------GMNM------- 384
Query: 469 QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGM 528
G R + QQ QQ IP+M G + +P +P +PV +
Sbjct: 385 ----------GNRMPSNKQQQQQQQIPMMPMMYQTMGNMMSFPRNTQMPGMPVQMM---- 430
Query: 529 LPGPYDIGGMPFRDAAFSQPMQTGALASALANASP-----------EQQRTLLGENLYPL 577
+ G M + F++ + LAS + + P E++R GE ++ L
Sbjct: 431 -----NQGYMSMANTQFNE--KYNKLASLMQSMDPIKREMIDAMTNEERRNTFGERIFYL 483
Query: 578 VDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
+ + +K+TGM+LE+ +++ ++ P L K+ EA +VL
Sbjct: 484 IKTIGDPRCSKITGMMLELPVDDLMKIISDPGELLKKIDEANDVL 528
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 24/291 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L+V +L + + +L D F+ G ++S +V D T +SL YGYV+++ + + L +
Sbjct: 78 NLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVHFSDPNVTQKVLAD 137
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + + +M + S ++ N ++ L D F +G I S +
Sbjct: 138 MNKDVVEEGAMYVMEYEKRMKDTSSDWVTCYVANFPTTLTEDGLRDLFGKYGTINSVYIG 197
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK-----QVFVGPFLRKQERESTADK 215
+ GFV F N +SA A++ L ++ + ++V ++ER S K
Sbjct: 198 YKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVLYVNRLQSREERASINQK 257
Query: 216 T--------------RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS-KC 260
RF +YV +T T + L++IF +G I S ++ RD + K K
Sbjct: 258 ILEEKKKEEVERTKGRF--LYVGFGDQTITLERLREIFQAYGNIESCSIARDKNTKELKP 315
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
FGFV D ++A ++ A ++ D + V AQ + ER LK + +Q+
Sbjct: 316 FGFVCMDTTENAQNAIRAF--RESHDLKLKVELAQTREERAKMLKERRKQT 364
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 139/205 (67%), Gaps = 7/205 (3%)
Query: 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGF 172
I+ S P RK I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGF
Sbjct: 103 IINSNSTPDSRK-----IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGF 157
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTE 232
V FD EE+A++AI+K+NGML N+++V V F+ +++RE T F N+YVKNL E TE
Sbjct: 158 VHFDTEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLGEEFTE 216
Query: 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYV 291
L+++F +G ITS +M D +G+S+ FGFV +++P A +V L+GK+ D+K YV
Sbjct: 217 QHLREMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYV 276
Query: 292 GKAQKKYEREMELKGKFEQSLKETA 316
+A K ER+ E+ K E+ ++ A
Sbjct: 277 ARALSKAERQQEINRKLEERKRQKA 301
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 14/188 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKVN 174
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLGEEFTEQHLRE 221
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVA+ + A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 400 KEERRARL 407
K ER+ +
Sbjct: 282 KAERQQEI 289
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 10/207 (4%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A A + GI N+ D+R+ +Y+ +L+ S+++ +YD F+ G +++ V
Sbjct: 91 AGALASGSSGGGIINSNSTPDSRK-----IYIKNLERSIDNKAVYDTFSVFGNILNCNVA 145
Query: 73 RDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY--RDPTIRKSGA-GN 129
+D S GYG+V+++ A A++++N N + + ++ RD K+ N
Sbjct: 146 KD-EDGNSRGYGFVHFDTEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKN 204
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++KNL + + L + F +G I S K+ D G+SR +GFV ++N +SA +A+ L+
Sbjct: 205 LYVKNLGEEFTEQHLREMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLH 264
Query: 190 GMLLND-KQVFVGPFLRKQERESTADK 215
G L D K ++V L K ER+ ++
Sbjct: 265 GKQLGDNKFLYVARALSKAERQQEINR 291
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
+Y+KNL+ SI + + + FS FG I +C V +D +G SRG GFV F T E A A+ ++N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKVN 174
Query: 384 GKMVVSKPLYVA--LAQRKEERRARLQFSQM 412
G + ++ ++V + +R E+ F +
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFKNL 205
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 154/466 (33%), Positives = 227/466 (48%), Gaps = 56/466 (12%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTE 232
V F+ + AK + ++ +LLN+ + + T KT+ +YVKN + E
Sbjct: 5 VHFEIQVEAKRVVHAVD-VLLNESG------MSDEHVNDTESKTKTCPIYVKNFVKEIDE 57
Query: 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
DD FG+ G ST ++ + G+ FG + F+ DA R+V+ + G + Y+
Sbjct: 58 DDF---FGKCG--ASTKIINNDCGQQTEFGLLPFNKQKDAIRAVDKMKGM-----DIYLA 107
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
+A+ K +R+ E K E K ++ +NLYVKNL I D +LK+ F+ FGTITS K
Sbjct: 108 QAKIKEKRQTEFSKKPEPLHK---PRYNSVNLYVKNLSYEIDDYRLKKEFAPFGTITSAK 164
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFS 410
VMR+ G S+G GFV FST EA KAL+EMNGK++ SKPLYVA AQRK+ER+ L Q++
Sbjct: 165 VMRE-GGRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYVAWAQRKQERQVSLAQQYT 223
Query: 411 Q-MRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQ 469
Q M P + P Q L + P P + P Q
Sbjct: 224 QRMEKAWIPNTKVNP------NQALLSRCS---MAPIPAVQNHSEDSLCRIPK------Q 268
Query: 470 PGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
Q QR GT P + Q +P P++ R Y+ P ++ V G+
Sbjct: 269 TAQFKQRCYRNAQGTAP--HSFQYMPRAHPQISTRK--YKLIPTKTAVNL-VRGIMSATS 323
Query: 530 PGPYDIGGMPFR-------DAAFSQPM-----QTGALASALANASPEQQRTLLGENLYPL 577
Y G AA P Q S L +ASP +Q+ +LG L+PL
Sbjct: 324 RNKYAAGDCNTELHSEKQTQAAMQHPAICVQGQEPLTISLLVSASPHEQKQMLGVRLFPL 383
Query: 578 VDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
V ++ A K+TG+LLE D +E++++LESPE L+ +A+ +L+
Sbjct: 384 VQIIDKKLAEKITGILLEFDTSEIIYMLESPELLRTMANKAVTLLQ 429
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 20/203 (9%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
T K+ I++KN K ID D F G S K+ + GQ +G + F+ ++
Sbjct: 37 TESKTKTCPIYVKNFVKEIDED---DFFGKCG--ASTKIINNDCGQQTEFGLLPFNKQKD 91
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-------RFN--NVYVKNLSETTT 231
A A+DK+ GM +++ K++R++ K R+N N+YVKNLS
Sbjct: 92 AIRAVDKMKGM-----DIYLAQAKIKEKRQTEFSKKPEPLHKPRYNSVNLYVKNLSYEID 146
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+ LKK F FG ITS VMR+ G+SK FGFV F P +A +++ +NGK K YV
Sbjct: 147 DYRLKKEFAPFGTITSAKVMREG-GRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYV 205
Query: 292 GKAQKKYEREMELKGKFEQSLKE 314
AQ+K ER++ L ++ Q +++
Sbjct: 206 AWAQRKQERQVSLAQQYTQRMEK 228
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIM------YSYRDPTIRK--SGAGNIFIKN 134
+G + +N +A RA+D++ + +I +S + + K + N+++KN
Sbjct: 81 FGLLPFNKQKDAIRAVDKMKGMDIYLAQAKIKEKRQTEFSKKPEPLHKPRYNSVNLYVKN 140
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
L ID+ L F+ FG I S KV + G+S+G+GFV F A+ A+ ++NG +L
Sbjct: 141 LSYEIDDYRLKKEFAPFGTITSAKVMREG-GRSKGFGFVCFSTPAEARKALSEMNGKILA 199
Query: 195 DKQVFVGPFLRKQERE 210
K ++V RKQER+
Sbjct: 200 SKPLYVAWAQRKQERQ 215
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ S +LYV +L ++D +L F G + S +V R+ RS G+G+V ++ EA
Sbjct: 130 RYNSVNLYVKNLSYEIDDYRLKKEFAPFGTITSAKVMREGG--RSKGFGFVCFSTPAEAR 187
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+AL E+N L KP+ + ++ R
Sbjct: 188 KALSEMNGKILASKPLYVAWAQR 210
>gi|326531316|dbj|BAK05009.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 134/396 (33%), Positives = 191/396 (48%), Gaps = 50/396 (12%)
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
F P S L + + + GK+ KK ER+ L+ E+ E K G N+Y
Sbjct: 1 FQKPRKCQESKRGLEWDRSGSENFVRGKSSKKAERKQYLQLLHEEKRNEIITKSNGSNVY 60
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KN+ D + DD L+E F+EFG ITS K+MRD GIS+G GFV +ST +EA A++ M G
Sbjct: 61 IKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYSTPDEAKCAVSSMRGV 120
Query: 386 MVVSKPLYVALAQRKEERRARLQ--FSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPII 443
M KPLYVA+AQRKE+R+ARL+ F+++ G P+ P P +++
Sbjct: 121 MFYGKPLYVAIAQRKEDRKARLEQRFAELATMAGTASPVIPTGYP----HVYFAHPSTHF 176
Query: 444 PPQPGFGYQQQLVPGMRPNYFVPMVQPGQ---QNQRPGGRRSGTGPMQQAQQPIPLMQPR 500
P P R + P + GQ QN P +QQ P+ PR
Sbjct: 177 PQGPS-----------RQGFMYPPIGLGQEWRQNVYPSPHS-----IQQIHAPLMPNTPR 220
Query: 501 ML--PRGR----IYRYPPGCNIPDVPVAGV-----------PGGMLPGPYDIGGMPFRDA 543
RGR + +P N P A +P G+
Sbjct: 221 QYRNNRGRMTGNMMTFPHAVNYVSHPQAAKDFMSMSRQQFGHAKYIPPDVVSNGLAIHH- 279
Query: 544 AFSQPMQT--GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
S P+ + + AS LA A P+QQR +LG +YPLV++ D A+K+TGMLLE+D + +
Sbjct: 280 --SGPISSVNDSFASLLAAAPPDQQRDMLGNRIYPLVERYHPDLASKITGMLLELDTSYL 337
Query: 602 LHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 637
L +L S + L AKV E ++ L+ QQ+T P D
Sbjct: 338 LSMLNSQDTLAAKVNECVQALQG---QQSTKNKPED 370
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%)
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
L +++R K+ +NVY+KN+S+ +D L++ F EFG ITS +MRD G SK FG
Sbjct: 41 LLHEEKRNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFG 100
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
FV + PD+A +V ++ G F K YV AQ+K +R+ L+ +F +
Sbjct: 101 FVCYSTPDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQRFAE 148
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDN 177
R+ I KS N++IKN+ +D+ L + F+ FGNI S K+ D G S+G+GFV +
Sbjct: 47 RNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYST 106
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ AK A+ + G++ K ++V RK++R++ ++ RF
Sbjct: 107 PDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQ-RF 146
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+++Y+ ++ V+D L + F + G + SV++ RD S G+G+V Y+ EA A+
Sbjct: 57 SNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRD-DKGISKGFGFVCYSTPDEAKCAVS 115
Query: 100 ELNFTPLNGKPIRIMYSYR 118
+ GKP+ + + R
Sbjct: 116 SMRGVMFYGKPLYVAIAQR 134
>gi|13365527|dbj|BAB39137.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 181 bits (459), Expect = 1e-42, Method: Composition-based stats.
Identities = 90/153 (58%), Positives = 108/153 (70%), Gaps = 3/153 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP +RKSG GNIFIKN+D+SIDNKAL+DT S FGNILSCKV D G S+GYGFV
Sbjct: 1 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTT 231
F+ +E+A AI+ +NGMLLND++VFVG F ++ER E A F NVY+KN SE
Sbjct: 60 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDID 119
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
+ LK IF EFG S VM D G S+ FGFV
Sbjct: 120 REKLKSIFSEFGKTLSVCVMTDESGCSRGFGFV 152
Score = 102 bits (253), Expect = 9e-19, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 11/160 (6%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ K+ N+++KN+ E+ L FG I S V+ D +G SK +GFV+F+
Sbjct: 4 QRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ A R++E +NG +D++ +VG + + ER E+ K E N+Y+K
Sbjct: 63 TQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAK----------AMEFTNVYIK 112
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
N + I +KLK +FSEFG S VM D +G SRG GFV
Sbjct: 113 NFSEDIDREKLKSIFSEFGKTLSVCVMTDESGCSRGFGFV 152
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ ++D S+++ LYD + G ++S +V D S GYG+V++ A RA++
Sbjct: 16 NIFIKNMDESIDNKALYDTSSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAANRAIET 73
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + + GA N++IKN + ID + L FS FG
Sbjct: 74 MNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDIDREKLKSIFSEFGKT 133
Query: 155 LSCKVATDSLGQSRGYGFV 173
LS V TD G SRG+GFV
Sbjct: 134 LSVCVMTDESGCSRGFGFV 152
Score = 73.9 bits (180), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+++KN+D+SI + L + S FG I SCKV+ D NG S+G GFV F T E A++A+ M
Sbjct: 16 NIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETM 74
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQFSQM 412
NG ++ + ++V + ++ER A + M
Sbjct: 75 NGMLLNDRKVFVGHFKSRKERMAEMGAKAM 104
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 126/175 (72%), Gaps = 3/175 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S+RDP +R+SGAGN+++KNLD++IDNKAL+DTFS FGNILSCKVA G+SRG+GFV
Sbjct: 1 MWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFV 60
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
F+++ESA++AI KLNGM + +K V+V PF + ER K F NVY+K++ + E+
Sbjct: 61 HFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTNVYIKHIPASWNEE 119
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
+K+ FG FG ITS AV D G+ F FVN+ + + A +VE ++GK ++E
Sbjct: 120 KIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDGKDVRNEE 172
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 84/168 (50%), Gaps = 15/168 (8%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL L F FG I S V DGKS+ FGFV+F+ + A ++ L
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + +K YV +K ER F N+Y+K++ S +++K+K
Sbjct: 76 NGMQIGEKTVYVAPFKKTAERNDGTPKNF-------------TNVYIKHIPASWNEEKIK 122
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
E F FG ITS V DP G R FV ++ E+A A+ EM+GK V
Sbjct: 123 EEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDGKDV 168
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+YVKNLD +I + L + FS FG I SCKV P+G SRG GFV F + E A A+ ++
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 383 NGKMVVSKPLYVALAQRKEER 403
NG + K +YVA ++ ER
Sbjct: 76 NGMQIGEKTVYVAPFKKTAER 96
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++YV +LD ++++ LYD F+ G ++S +V +S G+G+V++ + A A+ +
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESAEAAIAK 74
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGA----GNIFIKNLDKSIDNKALHDTFSTFGNILS 156
LN + K + + ++ R G N++IK++ S + + + + F FG I S
Sbjct: 75 LNGMQIGEKTVYVA-PFKKTAERNDGTPKNFTNVYIKHIPASWNEEKIKEEFGAFGEITS 133
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
V TD G R + FV + E A++A+++++G
Sbjct: 134 LAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDG 165
>gi|296235783|ref|XP_002763047.1| PREDICTED: uncharacterized protein LOC100399785, partial
[Callithrix jacchus]
Length = 445
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/149 (57%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
GG F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YV
Sbjct: 297 TRGGCEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYV 356
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
NY +A RAL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++
Sbjct: 357 NYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYN 416
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQF 175
FS FGNILSCKVA D G +GYGFV F
Sbjct: 417 IFSAFGNILSCKVACDEKG-PKGYGFVHF 444
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 310 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 369
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 370 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 425
Query: 247 STAVMRDADGKSKCFGFVNF 266
S V D G K +GFV+F
Sbjct: 426 SCKVACDEKGP-KGYGFVHF 444
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 311 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 370
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 371 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 414
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
+FS FG I SCKV D G +G GFV F
Sbjct: 415 YNIFSAFGNILSCKVACDEKG-PKGYGFVHF 444
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 153/254 (60%), Gaps = 11/254 (4%)
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
SA+SA L+G +++ K++FV F+ K ER + + F NVYV+NL E TED L ++F
Sbjct: 30 SARSA---LHGSMVDGKKLFVAKFINKDERAAMSWNQEFTNVYVENLIENVTEDILHRLF 86
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
++GI++S VMRD G+S+ GFVNF ++A ++VE L G++ K +VGKA +K E
Sbjct: 87 SQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFLCGRQLGSKTLFVGKALRKDE 146
Query: 300 REMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
R LK F + A G N+YVKNL +S++D +L+E+F +G I S KVMR N
Sbjct: 147 RMEMLKQHFRDN--SIAKPNMGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRHEN 204
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL-QFSQMRPPVG 417
G S+G GFV FS EE+ +A +N V KPL V + +RKE+ RL Q+ +P
Sbjct: 205 GRSKGFGFVCFSNREESKQAKRYLN---VDGKPLVVRVTERKEDTLKRLHQYFHGQPRHY 261
Query: 418 PRMPMYP-PVAPGL 430
+ P+ P P P L
Sbjct: 262 TQAPLVPSPTQPVL 275
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 97/163 (59%), Gaps = 11/163 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++++NL +++ LH FS +G + S V D +G+SRG GFV F + E+AK A++ L
Sbjct: 67 NVYVENLIENVTEDILHRLFSQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFL 126
Query: 189 NGMLLNDKQVFVGPFLRKQER-ESTADKTR----------FNNVYVKNLSETTTEDDLKK 237
G L K +FVG LRK ER E R ++N+YVKNLSE+ + L++
Sbjct: 127 CGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRLRE 186
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
IFG +G I S VMR +G+SK FGFV F + +++ ++ LN
Sbjct: 187 IFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN 229
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 16/165 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +L +V + L+ LF+Q G V SV V RD RS G G+VN+ A +A++
Sbjct: 66 TNVYVENLIENVTEDILHRLFSQYGIVSSVVVMRD-GMGRSRGLGFVNFCHLENAKKAVE 124
Query: 100 EL------NFTPLNGKPIR-------IMYSYRDPTIRK--SGAGNIFIKNLDKSIDNKAL 144
L + T GK +R + +RD +I K G N+++KNL +S+++ L
Sbjct: 125 FLCGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRL 184
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+ F +G I+S KV G+S+G+GFV F N E +K A LN
Sbjct: 185 REIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN 229
>gi|19074720|ref|NP_586226.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
gi|74697505|sp|Q8SR30.1|PABP_ENCCU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|19069362|emb|CAD25830.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
Length = 502
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 203/385 (52%), Gaps = 25/385 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S ++YVG+L DS L+ +F+ +G+V+SV++ + S + +V + +A RA+
Sbjct: 13 SLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAI 70
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E L+ + IR+M P GNIF+KNL + K L D FS FG I+SCK
Sbjct: 71 REYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAI---DKLNGMLLNDKQVFV---GPFLRKQEREST 212
VAT S G+S+GYGFVQF +++AK I L+G+LL ++ V P ++K E + T
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKT 186
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+ F N ++KN +E +L ++ +G +TS +GK K F F NF++ + A
Sbjct: 187 S--ATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESA 244
Query: 273 ARSVEALN-------GKKFDDKEWYVGKAQKKYEREMELKGKFEQ-SLKETADKFEGLNL 324
+++ L+ G+ + +Y+ K Q+K ER EL+ FEQ S++ + K NL
Sbjct: 245 LNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYK---KNL 301
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
Y+ N+ + ++L +F EFG ITS V D + ++ +ST EEAS A+ N
Sbjct: 302 YITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNE 361
Query: 385 KMVVSKPLYVALAQRKEERRARLQF 409
+ L VA + K ER +F
Sbjct: 362 IYLDGNRLQVAYFKNKLERMKEKEF 386
>gi|449329878|gb|AGE96146.1| polyadenylate-binding protein 2 [Encephalitozoon cuniculi]
Length = 502
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 203/385 (52%), Gaps = 25/385 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S ++YVG+L DS L+ +F+ +G+V+SV++ + S + +V + +A RA+
Sbjct: 13 SLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAI 70
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E L+ + IR+M P GNIF+KNL + K L D FS FG I+SCK
Sbjct: 71 REYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAI---DKLNGMLLNDKQVFV---GPFLRKQEREST 212
VAT S G+S+GYGFVQF +++AK I L+G+LL ++ V P ++K E + T
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKT 186
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+ F N ++KN +E +L ++ +G +TS +GK K F F NF++ + A
Sbjct: 187 S--ATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESA 244
Query: 273 ARSVEALN-------GKKFDDKEWYVGKAQKKYEREMELKGKFEQ-SLKETADKFEGLNL 324
+++ L+ G+ + +Y+ K Q+K ER EL+ FEQ S++ + K NL
Sbjct: 245 LNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYK---KNL 301
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
Y+ N+ + ++L +F EFG ITS V D + ++ +ST EEAS A+ N
Sbjct: 302 YITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNE 361
Query: 385 KMVVSKPLYVALAQRKEERRARLQF 409
+ L VA + K ER +F
Sbjct: 362 IYLDGNRLQVAYFKNKLERMKEKEF 386
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 131/204 (64%), Gaps = 1/204 (0%)
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ LK +FG+FG S VM D G SK FGFV+F +D ++V+ +NGK+ + K+ Y+
Sbjct: 3 DERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIYI 62
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
+A K E + EL+ KFE ++ A +++G+NLYVKNLDD I + L++ FS FGTIT
Sbjct: 63 SRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTITGA 122
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQ 411
K M + G S G GFV FS+ EEA+KA+TEMNG++V +KPL VALAQRKEER+A L
Sbjct: 123 KFMME-GGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLTNQY 181
Query: 412 MRPPVGPRMPMYPPVAPGLGQQLF 435
M+ R P + P Q L
Sbjct: 182 MQRMASVRAVPNPVILPATSQHLL 205
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 13/186 (6%)
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+D++ L D F FG LS KV D G S+G+GFV F E + A+D++NG LN KQ+
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 199 FVGPFLRKQERES---------TADK-TRFN--NVYVKNLSETTTEDDLKKIFGEFGIIT 246
++ + E ++ D+ TR+ N+YVKNL + E L+K F FG IT
Sbjct: 61 YISRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTIT 120
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
M + G S+ FGFV F P++A ++V +NG+ K V AQ+K ER+ L
Sbjct: 121 GAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLTN 179
Query: 307 KFEQSL 312
++ Q +
Sbjct: 180 QYMQRM 185
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110
++D +L DLF + G +SV+V D S G+G+V++ + +A+DE+N LN K
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMD-EGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQ 59
Query: 111 IRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
I I +++ D R G N+++KNLD ID L FS FG
Sbjct: 60 IYISRAHKTAEWQTELRCKFEHMNQDRATRYQGV-NLYVKNLDDGIDEGCLQKEFSPFGT 118
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
I K + G S G+GFV+F + E A A+ ++NG ++ K + V RK+ER++
Sbjct: 119 ITGAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQA-- 175
Query: 214 DKTRFNNVYVKNLS 227
N Y++ ++
Sbjct: 176 ---HLTNQYMQRMA 186
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ D++LK+LF +FG S KVM D G S+G GFV+F E+ KA+ E+NGK + K +
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 393 YVALAQRKEERRA--RLQFSQM 412
Y++ A + E + R +F M
Sbjct: 61 YISRAHKTAEWQTELRCKFEHM 82
>gi|50545625|ref|XP_500351.1| YALI0B00616p [Yarrowia lipolytica]
gi|49646217|emb|CAG82565.1| YALI0B00616p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 199/406 (49%), Gaps = 49/406 (12%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ S+YV +L SV+++ L++LF G + +++ RD R LG+ YV + A A
Sbjct: 17 TTMSIYVANLPGSVSEADLFELFKPHGPLKVIKIPRDPKLRTPLGHAYVTFYNPDHADAA 76
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKS-------------GAGNIFIKNLDKSIDNKAL 144
L L T L G+ + + P+ S A +F+++ +D
Sbjct: 77 LGALKETELGGQQVTCALTEEVPSSASSMSTPPSSAHSPIDPARAVFVRDTRDGVDAA-- 134
Query: 145 HDTFSTFGNILSCKVATDSLG----QSRG-YGFVQF--DNEESAKSAIDKLNGMLLNDKQ 197
+ K A +SLG Q +G FV EE++K D+L + ++ +
Sbjct: 135 -----------TTKTALESLGAVSLQPKGPNAFVAVFPTAEEASKVLSDELANLEISPVR 183
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
KT F N++V+ LS TTE+ L+ F FG +TS + D +
Sbjct: 184 ---------------DPKTHFTNLFVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHR 228
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETAD 317
+K FGFVNF++ DA +V AL+G + V +AQ K ER+ ELK +E + E
Sbjct: 229 AKGFGFVNFEEHRDAVTAVAALDGAELCGARISVSRAQSKVERQAELKRAYEANRIERLR 288
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
G NLY+ NL+ +I++++L+ FS+FG ITS ++M D G S+G GFV F + AS
Sbjct: 289 NARGTNLYITNLNPAINNERLRAYFSKFGEITSVRIMLDAVGNSKGFGFVCFRDPDHASN 348
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPP-VGPRMPM 422
A+ EM+ + + L VA+A +K+ + A + PP VG +P+
Sbjct: 349 AIAEMHNRPIEGNVLQVAIAHKKDPQSAPYSLGKRFPPSVGGAVPV 394
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 567 RTLLGENLYPLVDQL-----EHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
+ ++GE LYP+V + + D A VTG++L+ D ++L LE + L ++ +A +
Sbjct: 511 KEIVGETLYPIVQRHPAIGKDADTTAHVTGIMLQHDNADILSWLEDEQLLNKRIQQASDA 570
Query: 622 LRNVAQQQ 629
R +++
Sbjct: 571 YREWLEER 578
>gi|123445099|ref|XP_001311313.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121893117|gb|EAX98383.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 419
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 194/379 (51%), Gaps = 15/379 (3%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L+VGDL V+ + + +LF + G S + + +V + + A RAL E+
Sbjct: 8 LFVGDLPGYVDGNFIKELFREYGNFPSGTITVKKHKSLDKSFAFVTFESHELARRALLEV 67
Query: 102 NFTPLNGKPIRIMYSYRDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N+T L+G PIRI++S DP + K + I +LD+ I+ LHD FS FG ++SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPATKRAIKKDFCTLIIFDLDEYIEAAQLHDIFSNFGEVVSCK 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ + G+ RG G+V F EE A + L +N K + + + + + S + F
Sbjct: 126 IPLTN-GKPRGDGYVTFYKEEDAMRVKNDLAQASINGKPIQIVLYCKPTRKNS---EETF 181
Query: 219 NNVYVKNL--SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
NV++K L T +DL K+ +FG + ++ + DG S FGF NF DA ++V
Sbjct: 182 TNVFIKPLLVKYFKTNEDLAKLMKDFGEFVNPSIKFNDDGTSSEFGFCNFMYHQDAVKAV 241
Query: 277 EALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
E+LNGK + E+ +AQ K ER+ L + + + ++ G NLY+KN+D SI+
Sbjct: 242 ESLNGKMHISGEFEFVCCRAQTKAERQAFLAEQSAEFRRRLYEETRGRNLYIKNIDRSIN 301
Query: 335 DDKLKELFSEFGTITSCKVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
D++ +E F +FG + C + R+ S+G GFV F T E A AL + K L
Sbjct: 302 DEEFEEYFKQFGEVEKCLISREAQEPHESKGFGFVLFKTKEGAQNALKNTIITPLKGKIL 361
Query: 393 YVALAQRKEERRARLQFSQ 411
YV KEER L Q
Sbjct: 362 YVNYFIMKEEREHILPMDQ 380
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 137/285 (48%), Gaps = 23/285 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+L + DLD + +QL+D+F+ G+VVS ++ L+ + G GYV + +A R +
Sbjct: 95 CTLIIFDLDEYIEAAQLHDIFSNFGEVVSCKI--PLTNGKPRGDGYVTFYKEEDAMRVKN 152
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--GNIFIKNLDKSI--DNKALHDTFSTFGNIL 155
+L +NGKPI+I+ Y PT + S N+FIK L N+ L FG +
Sbjct: 153 DLAQASINGKPIQIVL-YCKPTRKNSEETFTNVFIKPLLVKYFKTNEDLAKLMKDFGEFV 211
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG-MLLNDKQVFVG----------PFL 204
+ + + G S +GF F + A A++ LNG M ++ + FV FL
Sbjct: 212 NPSIKFNDDGTSSEFGFCNFMYHQDAVKAVESLNGKMHISGEFEFVCCRAQTKAERQAFL 271
Query: 205 RKQE---RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD--GKSK 259
+Q R ++TR N+Y+KN+ + +++ ++ F +FG + + R+A +SK
Sbjct: 272 AEQSAEFRRRLYEETRGRNLYIKNIDRSINDEEFEEYFKQFGEVEKCLISREAQEPHESK 331
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
FGFV F + A +++ K YV K ERE L
Sbjct: 332 GFGFVLFKTKEGAQNALKNTIITPLKGKILYVNYFIMKEEREHIL 376
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 17/179 (9%)
Query: 235 LKKIFGEFGIITS-TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
+K++F E+G S T ++ K F FV F+ + A R++ +N K D
Sbjct: 22 IKELFREYGNFPSGTITVKKHKSLDKSFAFVTFESHELARRALLEVNYTKLDG------- 74
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
+ ++ + + A K + L + +LD+ I +L ++FS FG + SCK+
Sbjct: 75 --------VPIRILWSDPATKRAIKKDFCTLIIFDLDEYIEAAQLHDIFSNFGEVVSCKI 126
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQM 412
NG RG G+V F E+A + ++ + KP+ + L + + + F+ +
Sbjct: 127 PL-TNGKPRGDGYVTFYKEEDAMRVKNDLAQASINGKPIQIVLYCKPTRKNSEETFTNV 184
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 120/167 (71%), Gaps = 1/167 (0%)
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S VM D GKSK F FV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK E + E K
Sbjct: 15 SVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVEPQTEPKH 74
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
KFEQ ++T +++G+NLYVKNLDD I D+ L++ FS FGTITS KVM + G S+G GF
Sbjct: 75 KFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVMME-GGRSKGFGF 133
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR 413
V FS+ EEA+KA+ EMNG+ V +KPLYVALAQ KEE A L M+
Sbjct: 134 VCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTSQYMQ 180
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 104/186 (55%), Gaps = 16/186 (8%)
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+D++ L D F LS KV TD G+S+G+ FV F+ E A+ A+D++NG LN KQ+
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 199 FVGPFLRK------------QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+VG +K Q ++ T + + N+YVKNL + ++ L+K F FG IT
Sbjct: 58 YVGRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTIT 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S VM + G+SK FGFV F P++A ++V+ +NG+ K YV AQ K E L
Sbjct: 118 SAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTS 176
Query: 307 KFEQSL 312
++ Q +
Sbjct: 177 QYMQRM 182
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 21/174 (12%)
Query: 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110
++D +L DLF +SV+V D S + S G+ +V++ +A +A+DE+N LNGK
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGK-SKGFRFVSFERHEDAQKAVDEMNGKELNGKQ 56
Query: 111 IRI----------------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
I + + TI + N+++KNLD ID++ L FS FG I
Sbjct: 57 IYVGRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTI 116
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S KV + G+S+G+GFV F + E A A+ ++NG + K ++V K+E
Sbjct: 117 TSAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEE 169
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ D++LK+LF S KVM D +G S+G FV+F E+A KA+ EMNGK + K +
Sbjct: 1 MDDERLKDLFR---PALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 393 YVALAQRKEERRA--RLQFSQMR 413
YV AQ+K E + + +F QM+
Sbjct: 58 YVGRAQKKVEPQTEPKHKFEQMK 80
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 86 RYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 143
Query: 96 RALDELNFTPLNGKPIRI 113
+A+ E+N + KP+ +
Sbjct: 144 KAVKEMNGRTVATKPLYV 161
>gi|302408078|ref|XP_003001874.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
gi|261359595|gb|EEY22023.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
Length = 555
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 127/218 (58%), Gaps = 39/218 (17%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+L+ V ++ L++LF+ +G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T +NG+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDT S +
Sbjct: 119 LEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTISEGEDEDKV 178
Query: 158 KVA----------------------TDS-----------------LGQSRGYGFVQFDNE 178
K TD+ LG+S+G+GFV F N
Sbjct: 179 KEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKGFGFVCFSNP 238
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
E A A+ +N ++++K ++V RK R++ +++
Sbjct: 239 EDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLEQS 276
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 137/522 (26%), Positives = 212/522 (40%), Gaps = 150/522 (28%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV L TE L ++F G + S V RDA +S + +VN++ D +++E
Sbjct: 62 SLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 121
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + + +Q+ + +L++ N+++KNLD +I + L
Sbjct: 122 LNYTVINGRPCRIMWSQR------------DPALRKNGQG----NVFIKNLDVAIDNKAL 165
Query: 339 KELFSEFGTITSCK-----------------VMRDPN----------------------G 359
+ SE K V ++ + G
Sbjct: 166 HDTISEGEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLG 225
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-----QMRP 414
S+G GFV FS E+A+KA+ +MN +M+ +KPLYVALAQRK+ R+ +L+ S QMR
Sbjct: 226 KSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLEQSIQARNQMRM 285
Query: 415 PVG------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMV 468
P M PV F GQ P + PQ G G PN +P +
Sbjct: 286 QSAAAQAGMPNQFMQQPV-------YFPGQQPGFL-PQGGRGMP------FPPNMGMPNI 331
Query: 469 QPGQQNQRPGG--RRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPG-----CNIPDV-- 519
Q G+ Q P G ++ G G QQ + P M G ++PPG N P
Sbjct: 332 QGGRPGQYPAGFPQQGGRGIPQQ-------LPPNMY--GVPGQFPPGGFPAQANNPQFMA 382
Query: 520 --------------------PVAGVPGGMLPGPYDIGGMPFRDAAF-------------- 545
P+ G+P G + GP G P R
Sbjct: 383 AMQQVQQASMGGGRGQGGRGPMQGMPAGPM-GPGAPGYPPNRQQPGQAGGRGGRNGQQGN 441
Query: 546 ---------------SQPMQTGALASALANAS-PEQQRTLLGENLYPLVDQLEHDNAAKV 589
+ P A+ L NA+ QQ+ ++GE ++P + + + A K+
Sbjct: 442 FPPQGGRGAPGAGENTPPQGLSAIQLQLNNATDARQQKQIIGELIFPKIAAQQPELAGKI 501
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TGMLLEM+ +E++ L+E A+K KV EA+ V + Q T
Sbjct: 502 TGMLLEMENSELITLIEDDNAMKLKVDEALGVYEEYVKNQGT 543
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ L+ + L + FS G + S +V D++ + S GY +V ++ + A+
Sbjct: 60 SASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 119
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL-------------SETTTE 232
++LN ++N + + +R+ K NV++KNL SE E
Sbjct: 120 EELNYTVINGRPCRI----MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTISEGEDE 175
Query: 233 DDLKKIFGEFGI---------ITSTAVMRDAD-----------------GKSKCFGFVNF 266
D +K+ E + DA+ GKSK FGFV F
Sbjct: 176 DKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKGFGFVCF 235
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+P+DA ++V +N + D+K YV AQ+K R K + EQS++
Sbjct: 236 SNPEDATKAVADMNQRMIDNKPLYVALAQRKDVR----KNQLEQSIQ 278
>gi|378756066|gb|EHY66091.1| hypothetical protein NERG_00787 [Nematocida sp. 1 ERTm2]
Length = 513
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 201/376 (53%), Gaps = 23/376 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGD+ S +S L+ +F+++GQ+ +V + R +LS + Y YV + A++
Sbjct: 20 SIYVGDIPTSTTESDLFQIFSKVGQIYTVIIPRKELSIVKDKCYAYVTFFDEASVPTAIE 79
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
NF LNG IR+M ++ + GNI IKNL K DN+ L+DTF FG I+SCKV
Sbjct: 80 TFNFYELNGSQIRVMPLDKESVVNNR-EGNIVIKNLPKETDNQTLYDTFIIFGPIVSCKV 138
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR-- 217
+SL + G G++Q+ + + A+ AI +N ++LN K++ + +RE +
Sbjct: 139 VKNSLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKKLCAVQCVPNDKREKKRENVEKI 198
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+Y+KN + E+++KK E+G +TS V R G+ + F F N+ + A ++
Sbjct: 199 FTNIYMKNFPKGVEEEEIKKKLEEYGELTSFFVPRAETGEMRGFAFANYKTHEMAEAAIL 258
Query: 278 ALNGKKF------DDKEWYVGKAQKKYEREMELKGKF----EQSLKETADKFEGLNLYVK 327
L+ K F + + YV +A+ K ER E G F EQ ++ N+Y+
Sbjct: 259 GLHDKPFFGGNSGEGENLYVQRAKLKSERVEETAGYFANPPEQEVRR--------NIYIT 310
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NL ++++ + + FS++G I + K+ D +R G+V + AE+A+KA+ N
Sbjct: 311 NLPGDLNEEDVVKYFSKYGPINTYKLGTDTKN-NRSYGYVFYQKAEDAAKAVELANKSEY 369
Query: 388 VSKPLYVALAQRKEER 403
+PL VA + K+ R
Sbjct: 370 CGQPLGVAFFKCKKLR 385
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 22/197 (11%)
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD--ADGKSKCFGFVNFDDPDDAAR 274
R N++YV ++ +TTE DL +IF + G I + + R + K KC+ +V F D
Sbjct: 17 RQNSIYVGDIPTSTTESDLFQIFSKVGQIYTVIIPRKELSIVKDKCYAYVTFFDEASVPT 76
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
++E N + + + V K+ + EG N+ +KNL
Sbjct: 77 AIETFNFYELNGSQIRVMPLDKE----------------SVVNNREG-NIVIKNLPKETD 119
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L + F FG I SCKV+++ G G++ + + A A+ +N M+ K L
Sbjct: 120 NQTLYDTFIIFGPIVSCKVVKNSLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKKLCA 179
Query: 395 ALA---QRKEERRARLQ 408
++E++R ++
Sbjct: 180 VQCVPNDKREKKRENVE 196
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q V ++Y+ +L +N+ + F++ G + + ++ D RS YGYV Y A +A
Sbjct: 301 QEVRRNIYITNLPGDLNEEDVVKYFSKYGPINTYKLGTDTKNNRS--YGYVFYQKAEDAA 358
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSG--AGNIF 131
+A++ N + G+P+ + + ++ +R+ G NI+
Sbjct: 359 KAVELANKSEYCGQPLGVAF-FKCKKLRELGKATNNIY 395
>gi|167534320|ref|XP_001748838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772800|gb|EDQ86448.1| predicted protein [Monosiga brevicollis MX1]
Length = 514
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 197/401 (49%), Gaps = 19/401 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY---NAAHEAT 95
S SL + L + +SQL +LF +G S+ + RD + + LG+GYVN+ ++A EA
Sbjct: 10 SASLRIDHLPETATESQLAELFGAIGDFKSIHIIRDSISNKPLGHGYVNFEDVDSAIEAI 69
Query: 96 RALDELNFTPLNG-KPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+ LD ++ T N K I + ++ P + +G +F+KNL + +DNK + DTF++ G
Sbjct: 70 KVLDGMDLTGGNDDKGISLSFTPSQPASSAASSGTLFVKNLAEDVDNKTIFDTFASIGAP 129
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
S KV T + G+SRG+ V +D+ + A+ A+D+L G+++N K + + R Q +
Sbjct: 130 SSAKVMTTAEGKSRGFAIVHYDDPQLAQRALDELEGVVVNGKNIRLE---RYQTGAQLKE 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM-RDADGKSKCFGFVNFDDPDDAA 273
++R VY+ L T+ L + FG + S + +D D FV +D
Sbjct: 187 ESRKRTVYLAGLPHEVTDKQLIDLLSPFGSVISVKLYPKDKDRNP--VAFVTMEDEQAVL 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+VE LNG F+ + V + Q + + ++ET D LYV+N+ + +
Sbjct: 245 RAVEKLNGGSFERQRITVAQLQARNPATQSSGPTSARQVEETKDA----TLYVRNIYEDV 300
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D L E F FG ++ + R NG +RG FV F E+ + AL N V +
Sbjct: 301 QDSDLSEAFGVFGPVSRVTIPRSANGDTRGFAFVVFENPEDRAHALAAGNMLEVGGGKVQ 360
Query: 394 VALAQRKEERRARLQFSQMRPPVG--PRMPMYPP--VAPGL 430
+ + KEE + F MRP G P PP V P L
Sbjct: 361 YSAYRTKEELQNMSSFG-MRPNAGAPAANPQCPPRQVGPTL 400
>gi|269859758|ref|XP_002649603.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
gi|220066966|gb|EED44435.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
Length = 484
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 199/380 (52%), Gaps = 32/380 (8%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGD+ L+ ++L ++F + V ++ + + L+ + + +V +++A+ A A+ +
Sbjct: 23 IHVGDISLNTTANELKEVFKGLN-VTNIIMKKTLNGQ--YAFAFVKFDSANAAQEAVQKY 79
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N+T LNGK I + S D + S + NIF+ N+ + K L + F FG +LSCK++
Sbjct: 80 NYTMLNGKEILLTIS--DTQFKYSQSANIFVNNIPTDMSAKDLEEIFKNFGPVLSCKISR 137
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNV 221
S G+S+GYG+V + N +SAK A+ + +N+ +FV F Q+ ++ F N
Sbjct: 138 TSEGKSKGYGYVMYKNLKSAKKAVTNCQNVKINENILFVD-FYNPQKSARNSENKAFTNC 196
Query: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
+ KN TE +LK + ++G IT+ +DGK F VN+ P+ A R+++ L+
Sbjct: 197 FCKNFPPNYTEAELKNLLKKYGEITTIYFPTKSDGKPVGFACVNYAHPESAVRAIDELHN 256
Query: 282 K------------KFDDKEWYVGKAQKKYEREMELKG------KFEQSLKETADKFEGLN 323
K KF + +Y+ K +KK ERE LK F LK N
Sbjct: 257 KQIFNNNQMQKDTKFAIEPFYIQKNEKKKEREQILKSFYGNSVGFRNKLKR--------N 308
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L+++N+ S S+D+L E+ +FG IT K+ D + G+V +ST EEA+ AL +
Sbjct: 309 LFIQNVPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFGYVCYSTIEEAAVALEKSK 368
Query: 384 GKMVVSKPLYVALAQRKEER 403
++ L +++ + K ER
Sbjct: 369 QVLLDGNQLELSIYKSKYER 388
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 30/292 (10%)
Query: 39 STSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
S +++V ++ D+S D L ++F G V+S ++ R S +S GYGYV Y A +
Sbjct: 103 SANIFVNNIPTDMSAKD--LEEIFKNFGPVLSCKISRT-SEGKSKGYGYVMYKNLKSAKK 159
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKS---GAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A+ +N + + + + R S N F KN + L + +G
Sbjct: 160 AVTNCQNVKINENILFVDFYNPQKSARNSENKAFTNCFCKNFPPNYTEAELKNLLKKYGE 219
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL-------NGMLLNDKQVFVGPFL-- 204
I + T S G+ G+ V + + ESA AID+L N + D + + PF
Sbjct: 220 ITTIYFPTKSDGKPVGFACVNYAHPESAVRAIDELHNKQIFNNNQMQKDTKFAIEPFYIQ 279
Query: 205 ---RKQERESTADKTRFN----------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
+K+ERE N N++++N+ + +ED+L +I +FG IT +
Sbjct: 280 KNEKKKEREQILKSFYGNSVGFRNKLKRNLFIQNVPTSFSEDELLEILKKFGNITDFKLK 339
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
D K FG+V + ++AA ++E D + + + KYER E
Sbjct: 340 LDTLHPEKQFGYVCYSTIEEAAVALEKSKQVLLDGNQLELSIYKSKYERSTE 391
>gi|402466517|gb|EJW01988.1| hypothetical protein EDEG_03560 [Edhazardia aedis USNM 41457]
Length = 571
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 148/256 (57%), Gaps = 7/256 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD--LSTRRSLGYGYVNYNAAHEA 94
++ ++YVGDL+ D+ L+ LF+ G V+S+++ + L + SL Y YVNY + A
Sbjct: 3 LLNRTVYVGDLNPLTLDTDLHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCA 62
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIR--KSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+A+ LNF L+G IR+M + ++ K G NI +KNL S DNK L+DTFS FG
Sbjct: 63 LKAVQNLNFAELHGTQIRVMLYNKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSVFG 122
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
+I+S KVA DS + +G+GFV + ++ S K AI +G +N + V FLRK++R
Sbjct: 123 DIISSKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRVVE 182
Query: 213 ADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
DK F N Y+KN +E+ LK+I +G ITS V R+AD K F F NF D
Sbjct: 183 KDKIEELFTNCYIKNFG-GLSEEQLKEICANYGEITSFVVPRNADNSLKGFAFCNFKDHV 241
Query: 271 DAARSVEALNGKKFDD 286
A +++E L+ +D
Sbjct: 242 SAKKAIEDLHDLSIED 257
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 289 WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI 348
+Y+ +AQ + ER LK +++ +E NLY+ L + S+ + E+FS+ GTI
Sbjct: 360 FYIQRAQTRQERHEFLKEFIKKAAEENLSY--KRNLYITTLPPTASEKDVLEIFSKHGTI 417
Query: 349 TSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
T+ K+ D N G+ ++ + T EEA AL N ++ L V+ + K+ER+
Sbjct: 418 TNFKLKSDINTGLK--FCYICYKTPEEALIALERGNETILDGHKLNVSFFKTKKERQ 472
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 394 VALAQRKEERRARLQFSQMRPPVGPR 419
VALAQRKEER+A L M+ G R
Sbjct: 120 VALAQRKEERKAHLTNQYMQRVAGMR 145
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 13/141 (9%)
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTT 231
A++++NG ++ K +FVG +K ER++ + +R+ N+Y+KNL +T
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 61
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ L+K F FG ITS VM + DG+SK FGFV F P++A ++V +NG+ K YV
Sbjct: 62 DEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
Query: 292 GKAQKKYEREMELKGKFEQSL 312
AQ+K ER+ L ++ Q +
Sbjct: 121 ALAQRKEERKAHLTNQYMQRV 141
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 327 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 386
Query: 615 VAEAMEVLR 623
V EA+ VL+
Sbjct: 387 VDEAVAVLQ 395
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 22/148 (14%)
Query: 96 RALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
+A++E+N ++GK I R + I + N++IKNLD +I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
D++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K ++
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 200 VGPFLRKQERESTADKTRFNNVYVKNLS 227
V RK+ER K N Y++ ++
Sbjct: 120 VALAQRKEER-----KAHLTNQYMQRVA 142
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 45 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 102
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 103 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 141
>gi|47229360|emb|CAF99348.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 96/124 (77%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 AASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSC 157
ILSC
Sbjct: 125 ILSC 128
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 72 MNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NIFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSC 351
+ FS FG I SC
Sbjct: 116 YDTFSAFGNILSC 128
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ + V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITST 248
F FG I S
Sbjct: 118 TFSAFGNILSC 128
>gi|429963232|gb|ELA42776.1| hypothetical protein VICG_00091 [Vittaforma corneae ATCC 50505]
Length = 528
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 190/345 (55%), Gaps = 31/345 (8%)
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA-----GNIFIKNLD 136
Y +V + + +A R +++ N+T L+ + + +M I SG N+F+KN+
Sbjct: 92 SYAFVTFLSIEDAKRIVEKYNYTTLHDREMTLM-------ILTSGNVFPENANLFVKNIP 144
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
K K L++ F FG+I SCKV+ DS G+SRGYGFVQ++ ESA AI L K
Sbjct: 145 KEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKFEGK 204
Query: 197 QVFVGPF---LRKQER-ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+ + F LR Q+ +S++ + F NV+VKN + TE LK I ++G I S +
Sbjct: 205 TLSISRFDRSLRDQKHSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEKYGPICSIYLPL 264
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE-----------WYVGKAQKKYERE 301
+ + F VNF+ +DAA++VE L+ K E +Y+ KA+++ ERE
Sbjct: 265 NEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPFYIQKAERRKERE 324
Query: 302 MELKGKFEQ-SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
++ + E SLK K NLY+ ++ ++ S+D++++LFS+FGTI S K+ + +
Sbjct: 325 ETIRKQLEALSLKGINSK---NNLYIAHIPETFSEDEIRDLFSKFGTIVSIKLQKTSSEN 381
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
++ G++ F T EEA+ A M+G ++ + L ++ + K ERRA
Sbjct: 382 NKQFGYICFKTPEEAAAAFEAMDGTLLDNSKLRISFYKAKNERRA 426
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 135/294 (45%), Gaps = 34/294 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L+V ++ +LY++F G + S +V D S S GYG+V Y A +A+ +
Sbjct: 137 NLFVKNIPKEYTTKKLYEIFKDFGSIASCKVSVD-SNGESRGYGFVQYETVESADKAIAD 195
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGA----------GNIFIKNLDKSIDNKALHDTFST 150
L GK + I S D ++R N+F+KN S+ L D
Sbjct: 196 LRDEKFEGKTLSI--SRFDRSLRDQKHSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEK 253
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL------NDKQVFVGPFL 204
+G I S + + + G+ V F+ E A A++ L+ + D V PF
Sbjct: 254 YGPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPFY 313
Query: 205 -----RKQERESTADK----------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
R++ERE T K NN+Y+ ++ ET +ED+++ +F +FG I S
Sbjct: 314 IQKAERRKEREETIRKQLEALSLKGINSKNNLYIAHIPETFSEDEIRDLFSKFGTIVSIK 373
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+ + + +K FG++ F P++AA + EA++G D+ + + + K ER E
Sbjct: 374 LQKTSSENNKQFGYICFKTPEEAAAAFEAMDGTLLDNSKLRISFYKAKNERRAE 427
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 130/270 (48%), Gaps = 42/270 (15%)
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ + L QS Y FV F + E AK ++K N L+D+++ + A
Sbjct: 82 KMKKNDLIQS-SYAFVTFLSIEDAKRIVEKYNYTTLHDREMTLMILTSGNVFPENA---- 136
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
N++VKN+ + T L +IF +FG I S V D++G+S+ +GFV ++ + A +++
Sbjct: 137 --NLFVKNIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIA 194
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG------LNLYVKNLDD 331
L +KF+ K + + F++SL++ N++VKN
Sbjct: 195 DLRDEKFEGKTLSISR--------------FDRSLRDQKHSDSSSSTSSFTNVFVKNFPS 240
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF--VAFSTAEEASKALTEMNGKMVVS 389
S+++ KLK++ ++G I C + N S GF V F AE+A+KA+ ++ K + S
Sbjct: 241 SLTEAKLKDILEKYGPI--CSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFS 298
Query: 390 -----------KPLYVALAQRKEERRARLQ 408
P Y+ A+R++ER ++
Sbjct: 299 LEECQDSSVATCPFYIQKAERRKEREETIR 328
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NLS T+ +L +F + M+ D + FV F +DA R VE N
Sbjct: 57 NLSPKTSIAELVALFSREPVAIEDIKMKKNDLIQSSYAFVTFLSIEDAKRIVEKYNYTTL 116
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF-EGLNLYVKNLDDSISDDKLKELFS 343
D REM L + + + F E NL+VKN+ + KL E+F
Sbjct: 117 HD-------------REMTL------MILTSGNVFPENANLFVKNIPKEYTTKKLYEIFK 157
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+FG+I SCKV D NG SRG GFV + T E A KA+ ++ + K L ++ R
Sbjct: 158 DFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKFEGKTLSISRFDR 213
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 158/294 (53%), Gaps = 19/294 (6%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ S ++++ +LD S+++ L+D F+ G ++S ++ D S S GYG+V+Y A
Sbjct: 127 RKTGSGNVFIKNLDPSIDNKALHDTFSAFGNILSCKIALDESG-NSKGYGFVHYETEEAA 185
Query: 95 TRALDELNFTPLNGKPI----RIMYSYRDPTIRKSGA--GNIFIKNLDKSIDNKALHDTF 148
A+ +N LN K + + R I + A N+++KNLD+S+ ++ ++
Sbjct: 186 DNAIKHVNGMLLNDKKVYVGRHVPKKERQAKIEQFRAKFTNVYVKNLDESVKDEEFNEML 245
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
+ FG I S V TD G+S+G+GFV F+N E A+ A+D LN K ++V +K E
Sbjct: 246 AKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAVDALNETEHKGKILYVARAQKKTE 305
Query: 209 RESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE K ++ N+Y+KNL + ++ L++ F +G+ITS VM D
Sbjct: 306 REEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKD 365
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
SK FGFV F PD+A ++V +NG+ K YV AQ+K R +L+ + Q
Sbjct: 366 TSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRKEIRRSQLEAQMAQ 419
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 43/58 (74%)
Query: 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
Q+ +LGE LYPL++ + + A K+TGMLLEMD E+L+LLE +AL K+ E MEVL+
Sbjct: 550 QKQMLGERLYPLINAQQPEFAGKITGMLLEMDNGELLNLLEDSKALDGKINEPMEVLK 607
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 186/374 (49%), Gaps = 23/374 (6%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L+VG+L S+ +L +LF G++V RV D T S GYG+V Y+ A A+
Sbjct: 229 TNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIK 288
Query: 100 ELNFTPLNGK--PIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+N + G+ +R+ + + ++ +++ NL + LHD F +G + S
Sbjct: 289 HMNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSV 348
Query: 158 KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV--------GPFLRKQE 208
KV D + G S+GYGFV++ + + A AI +LNG L+ K++ V G Q
Sbjct: 349 KVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQA 408
Query: 209 REST----ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGF 263
T + +NVYV+NL D L +F +G +TS V D G SK +GF
Sbjct: 409 ISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGF 468
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
V F DP DAA +V LNG + ++ V E + +LKE + N
Sbjct: 469 VKFSDPHDAAHAVIELNGCLVEGRKILVRVRPPSSPVESHANNR---TLKE----IDMSN 521
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
LYV N+ S++ KL ELF FG IT V+ N S+G GFV F+ + A++A+ MN
Sbjct: 522 LYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMN 581
Query: 384 GKMVVSKPLYVALA 397
G ++ + + V +A
Sbjct: 582 GALIEGETISVRVA 595
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 182/389 (46%), Gaps = 37/389 (9%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ + LYV +L L +++ +L+DLF GQV SV+V RD +T S GYG+V Y+
Sbjct: 311 GSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDP 370
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA--------------------GNIF 131
A A+ +LN + GK + + R + SG+ N++
Sbjct: 371 QHAAHAIFQLNGHLIEGKKMEV----RVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVY 426
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
++NL ++ L + F +G + S KVA D + G S+GYGFV+F + A A+ +LNG
Sbjct: 427 VQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNG 486
Query: 191 MLLNDKQVFV-----GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
L+ +++ V + T + +N+YV N+ + + L ++F FG I
Sbjct: 487 CLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVELFLPFGRI 546
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
T V+ ++ SK +GFV F D AA +V +NG + + V A +
Sbjct: 547 THAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVAGLSPSVSSSVS 606
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
S + + LYV NL ++S DKL LF FG I + + +
Sbjct: 607 QHSPHSEINASPEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAEYS------- 659
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYV 394
FV ++ A+KAL M+G ++ K L V
Sbjct: 660 FVLYADINSAAKALKHMDGYLIEGKRLVV 688
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 166/397 (41%), Gaps = 50/397 (12%)
Query: 18 PSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
PS ANN + ++ ++LYV ++ S+N ++L +LF G++ V S
Sbjct: 501 PSSPVESHANNRTL---KEIDMSNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQ-SN 556
Query: 78 RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS-------------------YR 118
S GYG+V + +H A A+ +N + G+ I + +
Sbjct: 557 NSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINA 616
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
P I +++ NL +++ L F FG I D + Y FV + +
Sbjct: 617 SPEINNC---RLYVTNLPQTMSADKLVSLFMPFGQI-------DRVVMYAEYSFVLYADI 666
Query: 179 ESAKSAIDKLNGMLLNDKQVFV----------GPFLRKQERESTADKTRFNNVYVKNLSE 228
SA A+ ++G L+ K++ V Q + N+YV +
Sbjct: 667 NSAAKALKHMDGYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPS 726
Query: 229 TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
T + L +IF +G I A DA +G + + + AA +++ L+G +
Sbjct: 727 AVTCEQLVQIFCLYGEIVQ-AKKFDAG-----YGMIRYANASSAAAAIDHLDGYQIGGST 780
Query: 289 WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI 348
V A E ++ + Q+ + + NLYV L ++ DKL ELF G I
Sbjct: 781 LVVRVAGLPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQI 840
Query: 349 TSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNG 384
T KV+ D G+S+G GFV F+ A A+ A+T MNG
Sbjct: 841 TQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNG 877
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 112/271 (41%), Gaps = 41/271 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L +++ +L LF GQ+ V + + Y +V Y + A +AL +
Sbjct: 625 LYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAE--------YSFVLYADINSAAKALKHM 676
Query: 102 NFTPLNGKPIRIMYSYRDPT--------------IRKSGAGNIFIKNLDKSIDNKALHDT 147
+ + GK + + S P +++ N+++ + ++ + L
Sbjct: 677 DGYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQI 736
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV------- 200
F +G I+ K GYG +++ N SA +AID L+G + + V
Sbjct: 737 FCLYGEIVQAKKF------DAGYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPA 790
Query: 201 ----GPFLRK-QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA- 254
F R Q + + N+YV L T D L ++F G IT V+ D
Sbjct: 791 ESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKF 850
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285
G SK FGFV F D AA ++ +NG D
Sbjct: 851 TGVSKGFGFVRFADAYSAATAITHMNGYPLD 881
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 24/200 (12%)
Query: 18 PSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
P+ A + G ++ +LYVG + +V QL +F G++V +
Sbjct: 695 PANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGEIVQAK------- 747
Query: 78 RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS-----------YRDPTI---- 122
+ GYG + Y A A A+D L+ + G + + + R P
Sbjct: 748 KFDAGYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPAESDVATFARTPQTPGNE 807
Query: 123 -RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEES 180
R+ N+++ L + L + F G I KV D G S+G+GFV+F + S
Sbjct: 808 HRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYS 867
Query: 181 AKSAIDKLNGMLLNDKQVFV 200
A +AI +NG L+ + V
Sbjct: 868 AATAITHMNGYPLDGHMLAV 887
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 61 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 399 RKEERRARL 407
RKEER+A L
Sbjct: 120 RKEERQAHL 128
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 13/137 (9%)
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDL 235
+NG LN KQ++VG +K ER++ + TR+ N+YVKNL + ++ L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
+K F FG ITS VM + G+SK FGFV F P++A ++V +NG+ K YV AQ
Sbjct: 61 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 296 KKYEREMELKGKFEQSL 312
+K ER+ L ++ Q +
Sbjct: 120 RKEERQAHLTNQYMQRM 136
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 45 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 103
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER++ N Y++ ++
Sbjct: 104 NGRIVATKPLYVALAQRKEERQA-----HLTNQYMQRMA 137
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 40 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 97
Query: 96 RALDELNFTPLNGKPIRIMYSYRD 119
+A+ E+N + KP+ + + R
Sbjct: 98 KAVTEMNGRIVATKPLYVALAQRK 121
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 399 RKEERRARL 407
RKEER+A L
Sbjct: 120 RKEERKAHL 128
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 13/137 (9%)
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDL 235
+NG ++ K +FVG +K ER++ + +R+ N+Y+KNL +T ++ L
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
+K F FG ITS VM + DG+SK FGFV F P++A ++V +NG+ K YV AQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 296 KKYEREMELKGKFEQSL 312
+K ER+ L ++ Q +
Sbjct: 120 RKEERKAHLTNQYMQRV 136
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 103
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER K N Y++ ++
Sbjct: 104 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 137
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 40 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 97
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 98 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 136
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 399 RKEERRARLQFSQMRPPVGPR 419
RKEER+A L M+ G R
Sbjct: 120 RKEERKAHLTNQYMQRVAGMR 140
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 13/137 (9%)
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDL 235
+NG ++ K +FVG +K ER++ + +R+ N+Y+KNL +T ++ L
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
+K F FG ITS VM + DG+SK FGFV F P++A ++V +NG+ K YV AQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 296 KKYEREMELKGKFEQSL 312
+K ER+ L ++ Q +
Sbjct: 120 RKEERKAHLTNQYMQRV 136
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 103
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER K N Y++ ++
Sbjct: 104 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 137
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 40 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 97
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 98 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 136
>gi|396082305|gb|AFN83915.1| polyadenylate-binding protein 2 [Encephalitozoon romaleae SJ-2008]
Length = 415
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 159/295 (53%), Gaps = 16/295 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI- 185
GNIF+KNL +S +K L D FS FG I+SCKVAT G+S+GYGFVQF +++AK I
Sbjct: 10 TGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKKAAKKVIK 69
Query: 186 --DKLNGMLLNDKQVFV---GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
+ LNG++L ++ V P ++K E + + T F N ++KN TTE +L ++
Sbjct: 70 NFNNLNGLMLGGNKIAVELYNPDMKKGESKKVS--TMFTNCFIKNFPVDTTEKELLELLV 127
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK-KFDDKE-----WYVGKA 294
+G +TS DGK K F F NF+ + A ++ L+G FD + +Y+ K
Sbjct: 128 RYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGEPFYIQKG 187
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
Q+K ER EL+ FEQ L + NLY+ N+ + ++L +F EFG+ITS V
Sbjct: 188 QRKEERAEELRKMFEQ-LSMQGQSYRK-NLYITNIPEGFGAEELNNIFKEFGSITSMSVG 245
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQF 409
D + ++ +ST EEAS A+ N + L V+ + K ER +F
Sbjct: 246 IDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVSYFKNKLERMKEKEF 300
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 128/289 (44%), Gaps = 29/289 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +L S L D F+ G++VS +V +S GYG+V + A + +
Sbjct: 12 NIFVKNLPESFTSKDLDDAFSMFGEIVSCKVA-TTPQGKSKGYGFVQFKEKKAAKKVIK- 69
Query: 101 LNFTPLNGKPI---RIMYSYRDPTIRKSGA-------GNIFIKNLDKSIDNKALHDTFST 150
NF LNG + +I +P ++K + N FIKN K L +
Sbjct: 70 -NFNNLNGLMLGGNKIAVELYNPDMKKGESKKVSTMFTNCFIKNFPVDTTEKELLELLVR 128
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-PFL----- 204
+G + S G+ +G+ F F++ ESA +AI+ L+G D G PF
Sbjct: 129 YGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGEPFYIQKGQ 188
Query: 205 RKQERE----------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
RK+ER S ++ N+Y+ N+ E ++L IF EFG ITS +V D
Sbjct: 189 RKEERAEELRKMFEQLSMQGQSYRKNLYITNIPEGFGAEELNNIFKEFGSITSMSVGIDG 248
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
K + ++ + P++A+ +VE N D V + K ER E
Sbjct: 249 ANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVSYFKNKLERMKE 297
>gi|365760899|gb|EHN02583.1| Pes4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 598
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 185/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L +F + VS +VC D T++SLG+GY+N+ EA RA++EL
Sbjct: 80 LFIGDLHETVTEETLKGIFGKFPSFVSAKVCLDSITKKSLGHGYLNFEDKEEAERAMEEL 139
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NG+ IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 140 NYTDVNGREIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 199
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ----------- 207
L + GFV F+NE++A++ I N K++ G K+
Sbjct: 200 -----LDSRKDIGFVYFENEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 254
Query: 208 ---------ERESTADKTRF---------------NNVYVKNLSETTTEDDLKKIFGEFG 243
E+E + T+ N++++KNL TT DD+ F E G
Sbjct: 255 SRLDAETIIEKEQALNATQLKRNDGASKNNQSSSQNSIFIKNLPIITTRDDVLNFFSEVG 314
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + +A + FV + +D+ ++++ N F K+ V +AQ K ER
Sbjct: 315 PIKS-IYLSNATKVKYLWAFVTYKSNEDSEKAIKRYNNFYFRGKKLLVSRAQDKEER--- 370
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
KF +S K + L+++NL + + LK L + I K+ D S
Sbjct: 371 --AKFIESQKMST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYNESSA 420
Query: 364 --SGFVAFSTAEEASKALTEMNGKMV 387
SG + F E+A++ +N ++V
Sbjct: 421 TYSGHIKFRNFEDATRIFNFLNNRLV 446
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 136/313 (43%), Gaps = 43/313 (13%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L F F + +S KV DS+ + S G+G++ F+++E A+ A+++L
Sbjct: 80 LFIGDLHETVTEETLKGIFGKFPSFVSAKVCLDSITKKSLGHGYLNFEDKEEAERAMEEL 139
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N +++ + P LR +T K NV+ NL + T F +G I
Sbjct: 140 NYTDVNGREIRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 195
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S + D GFV F++ A ++ N F K+ G +++E+
Sbjct: 196 LSCKLDSRKD-----IGFVYFENEKTARNVIKMYNNTSFFGKKILCGIH---FDKEVRSV 247
Query: 306 GKFEQ-----SLKETADKFEGLN---------------------LYVKNLDDSISDDKLK 339
FE + +K + LN +++KNL + D +
Sbjct: 248 PNFETQKSRLDAETIIEKEQALNATQLKRNDGASKNNQSSSQNSIFIKNLPIITTRDDVL 307
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
FSE G I S + + + FV + + E++ KA+ N K L V+ AQ
Sbjct: 308 NFFSEVGPIKSI-YLSNATKVKYLWAFVTYKSNEDSEKAIKRYNNFYFRGKKLLVSRAQD 366
Query: 400 KEERRARLQFSQM 412
KEER ++ +M
Sbjct: 367 KEERAKFIESQKM 379
>gi|14571650|emb|CAC42811.1| Poly(A)-binding protein cytoplasmic 5 [Cricetulus griseus]
Length = 177
Score = 158 bits (400), Expect = 7e-36, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDL V + LY F G + R+CRD T LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIK+LDKSIDN+ L FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
G S+GY +V FD+ +A AI +NG+ LN++QV+V
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 18/173 (10%)
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEALNG 281
V +L TED L K F G + T + RD S +G+VNF P DA ++ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 282 KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKEL 341
+ K + + +Q + L+++ N+++K+LD SI + L L
Sbjct: 82 DLINGKPFRLMWSQP------------DDRLRKSGVG----NIFIKHLDKSIDNRTLFYL 125
Query: 342 FSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
FS FG I SCKV+ D NG S+G +V F + A++A+ MNG + ++ +YV
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSR-GYGFVQFDNEESAKSAIDKLNG 190
+ +L + L+ F G + ++ D + S GYG+V F A+ A++ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++K+L ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
V+ D +G SK + +V+FD A R++ +NG ++++ YV
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
>gi|74762343|sp|Q6NV95.1|PAB1L_HUMAN RecName: Full=Putative protein PABPC1-like; AltName:
Full=Polyadenylate-binding protein pseudogene 2
gi|158258146|dbj|BAF85046.1| unnamed protein product [Homo sapiens]
Length = 269
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 138/241 (57%), Gaps = 22/241 (9%)
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
++GMLLN VFVG F +E+E+ L E + G +S
Sbjct: 1 MDGMLLNGLNVFVGRFRSPKEQEA-------------ELGARAKESKV-------GPASS 40
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V+ D GKSK FGFV+F+ +D +++ +NGK+F + Y+ A KK E + ELK K
Sbjct: 41 VKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVEEQTELKCK 99
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
FEQ ++ +++G N+ VKNLD+SI D++L++ FS FG I S VM + G S+ GFV
Sbjct: 100 FEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMME-GGCSKRFGFV 158
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVA 427
FS+ EE +KA+T MNGK+V SKPL+VALAQ KE+R A M+ R +P +
Sbjct: 159 CFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQKMASVRAVPHPVIN 218
Query: 428 P 428
P
Sbjct: 219 P 219
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 93/177 (52%), Gaps = 16/177 (9%)
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S G S KV TD G+S+G+GFV F+ E ++A+D +NG + Q ++ +K E
Sbjct: 33 SKVGPASSVKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVE 91
Query: 209 RESTADKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
E T K +F NV VKNL E+ ++ L+K F FGII S VM +
Sbjct: 92 -EQTELKCKFEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMMEG- 149
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
G SK FGFV F P++ A++V A+NGK K +V AQ K +R ++ Q +
Sbjct: 150 GCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQKM 206
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 26/184 (14%)
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS---- 116
+++G SV+V D +S G+G+V++ + A+D +N +G I +
Sbjct: 33 SKVGPASSVKVITD-EGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKV 90
Query: 117 -------------YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+D R GA N+ +KNLD+SID++ L FS FG I S V +
Sbjct: 91 EEQTELKCKFEQMKQDRITRYQGA-NVCVKNLDESIDDERLQKEFSPFGIINSANVMMEG 149
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYV 223
G S+ +GFV F + E A+ +NG ++ K + V K++R + F N Y+
Sbjct: 150 -GCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLA-----HFTNQYM 203
Query: 224 KNLS 227
+ ++
Sbjct: 204 QKMA 207
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 154/285 (54%), Gaps = 15/285 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G + S +V D++ + S GY +V ++ + A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ + + +R+ KT NV++KNL L F FG I
Sbjct: 118 EELNYTIIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 174 LSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 229
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+ +++D ++LF ++G +TS + RD G SRG G
Sbjct: 230 SKFEEM------KANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFG 283
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
FV F+T E ASKA+ E+N K + LYV AQ+K ER L+ S
Sbjct: 284 FVNFTTHESASKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKS 328
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
+L LA+A P QQ+ +LGE ++P + + D A K+TGMLLEM+ E+++L+E ALK
Sbjct: 636 SLQQQLASAPPPQQKQILGELIFPKIQAINADLAGKITGMLLEMENPELVNLIEDESALK 695
Query: 613 AKVAEAMEVLRNVAQQQAT 631
AKV EA+ V + Q +
Sbjct: 696 AKVDEALAVYDEYVKTQTS 714
>gi|303391122|ref|XP_003073791.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
gi|303302939|gb|ADM12431.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
Length = 410
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 173/330 (52%), Gaps = 31/330 (9%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI- 185
GNIF+KNL ++ +K L D FS FG I SCKVAT S G+S+GYGFVQF +++AK I
Sbjct: 10 TGNIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGYGFVQFKEKKAAKKVIK 69
Query: 186 --DKLNGMLLNDKQVFV---GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
+ LNG++L + ++ V P ++K E + T T F N ++KN E++L+++
Sbjct: 70 NFNNLNGLMLGENKIVVELYNPEMKKGENKKTP--TMFTNCFIKNFPVDVEEENLRELLE 127
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK-KFDDKE----WYVGKAQ 295
++G +TS DGK K F F NF+ + A +++ L+ F D E +Y+ K Q
Sbjct: 128 KYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEPFYIQKGQ 187
Query: 296 KKYEREMELKGKFEQ-SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
+K ER EL+ FEQ S++ + K NLY+ N+ + ++L +F EFG ITS V
Sbjct: 188 RKEERAEELRKTFEQLSMQGQSYK---KNLYITNIPEGFGAEELNNIFREFGNITSMSVG 244
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRP 414
D + +V +ST EEAS A+ N + L VA + K ER +F +
Sbjct: 245 TDGANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERMKEKEFGSIG- 303
Query: 415 PVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 444
Y P P + Y QG +P
Sbjct: 304 --------YKPNIPYM-----YNQGVNFVP 320
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 28/288 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +L + L D F+ G++ S +V S +S GYG+V + A + +
Sbjct: 12 NIFVKNLPENFTSKDLDDAFSMFGEITSCKVA-TTSHGKSKGYGFVQFKEKKAAKKVIK- 69
Query: 101 LNFTPLNGKPI---RIMYSYRDPTIRK-------SGAGNIFIKNLDKSIDNKALHDTFST 150
NF LNG + +I+ +P ++K + N FIKN ++ + L +
Sbjct: 70 -NFNNLNGLMLGENKIVVELYNPEMKKGENKKTPTMFTNCFIKNFPVDVEEENLRELLEK 128
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML-LNDKQ----VFVGPFLR 205
+G + S T G+ +G+ F F++ E A +AI L+ D + ++ R
Sbjct: 129 YGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEPFYIQKGQR 188
Query: 206 KQERESTADKT----------RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
K+ER KT N+Y+ N+ E ++L IF EFG ITS +V D
Sbjct: 189 KEERAEELRKTFEQLSMQGQSYKKNLYITNIPEGFGAEELNNIFREFGNITSMSVGTDGA 248
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
K + +V + P++A+ +VE N D V + K ER E
Sbjct: 249 NSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERMKE 296
>gi|294879376|ref|XP_002768666.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239871376|gb|EER01384.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 130/237 (54%), Gaps = 41/237 (17%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+K++ + TE+ +++ FG FG ITS A+ D G+ F FVNF + + A +VE
Sbjct: 4 FTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEFEQARAAVE 61
Query: 278 ALNGKKFDDKE---------------------------------------WYVGKAQKKY 298
++G+ ++E YV +AQ K
Sbjct: 62 DMDGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKA 121
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ER LK +F +F G+NLYVKNL +++ D++LK +F FGTITS KVM D
Sbjct: 122 ERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDK 181
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPP 415
G+SRG GFV FST EEA+KA+T+M+ K++ KPLYV + +++E+R RLQ PP
Sbjct: 182 GVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRYRAPP 238
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 53/231 (22%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IK++ S + + + F FG I S + TD G R + FV F E A++A++ +
Sbjct: 6 NVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKG--RRFAFVNFAEFEQARAAVEDM 63
Query: 189 NGMLLNDKQ---------------------------------------VFVGPFLRKQER 209
+G + +++ ++V K ER
Sbjct: 64 DGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKAER 123
Query: 210 EST----------ADKTRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
+ A RF N+YVKNL ET +++LK++F FG ITS VM D G
Sbjct: 124 AAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGV 183
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
S+ FGFV F ++A ++V ++ K K YVG +K+ +R L+ ++
Sbjct: 184 SRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 234
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G N+++KNL +++D+ L F FG I S KV TD G SRG+GFV F E A A+
Sbjct: 143 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 202
Query: 186 DKLNGMLLNDKQVFVGPFLRKQER 209
++ L+ K ++VG ++++R
Sbjct: 203 TDMHLKLIGGKPLYVGMHEKREQR 226
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F +LYV +L +V+D++L +F G + SV+V D S G+G+V ++ EAT
Sbjct: 141 RFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTD-DKGVSRGFGFVCFSTHEEAT 199
Query: 96 RALDELNFTPLNGKPIRI-MYSYRDPTIRK 124
+A+ +++ + GKP+ + M+ R+ + +
Sbjct: 200 KAVTDMHLKLIGGKPLYVGMHEKREQRLER 229
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/179 (50%), Positives = 105/179 (58%), Gaps = 15/179 (8%)
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK ER ELK K EQ E K++G+NLYVKNLD+S+ D+ LK+ F FG ITS KV
Sbjct: 1 AQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKV 60
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR 413
M D NG S+G GFV F EEA+ A+TEMN KMV SKPLYVALAQRKE+RRA+L M+
Sbjct: 61 MTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQ 120
Query: 414 PPVGPRMP-------MYPPVAPGLG--------QQLFYGQGPPIIPPQPGFGYQQQLVP 457
RM MY P G G QQ + GP I P G QQ P
Sbjct: 121 RLASMRMHSNVPGGGMYNPAQTGPGYYVANPMQQQRNFAGGPQIARPGGGRWGQQNQYP 179
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 58/93 (62%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKNL E+ ++ LKK F FG ITS VM D +G+SK FGFV F+ P++A +V +
Sbjct: 30 NLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEM 89
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
N K K YV AQ+K +R +L ++ Q L
Sbjct: 90 NSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 122
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 57/83 (68%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD+S+D++AL F FGNI S KV TD G+S+G+GFV F+ E A +A+ ++
Sbjct: 30 NLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEM 89
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
N ++ K ++V RK++R +
Sbjct: 90 NSKMVCSKPLYVALAQRKEDRRA 112
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD SV+D L F G + S +V D RS G+G+V + EA
Sbjct: 24 QKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTD-ENGRSKGFGFVCFEKPEEA 82
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIR 123
T A+ E+N + KP+ + + R R
Sbjct: 83 TTAVTEMNSKMVCSKPLYVALAQRKEDRR 111
>gi|320168681|gb|EFW45580.1| polyadenylate-binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 814
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 184/377 (48%), Gaps = 35/377 (9%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L V +LD ++D QL D+F + G ++ +C+ S S+G G V Y + +A A+ ++
Sbjct: 81 LVVKNLDPRMDDQQLRDIFGEFG---TMTLCKVAS---SIGVGLVTYESFDDAHAAMTQV 134
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N LNG+ +++ P+ + ++NL ++L FG + +
Sbjct: 135 NGMYLNGQQVQVHRLPERPS--------LIVRNLPADASEESLAALCRPFGRVGVATIVQ 186
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-PFLRKQERESTADKTRFN- 219
++ + G V D E A +AI L+G L Q+ V P R + +A R
Sbjct: 187 EA-PEDAPMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAERECESAVAQRLER 245
Query: 220 ---NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ +KN+ +D L+++F FG I S +MRD GKSK +GFV + + A++++
Sbjct: 246 LQGKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAM 305
Query: 277 EALNGKKFD------DKEWYVGKAQK---KYEREMELKGKFEQSLKETADKFEGLNLYVK 327
A +G+ FD D + K R E++ E + K NL ++
Sbjct: 306 AATHGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRK----NLCIR 361
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NL +SI + +L+ LF+ FG I +C V+RD G SR GFV F+T EEASKA+ EM+GK
Sbjct: 362 NLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPS 421
Query: 388 --VSKPLYVALAQRKEE 402
P+ V L+ R +
Sbjct: 422 PGTQMPMTVTLSHRARD 438
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 150/281 (53%), Gaps = 27/281 (9%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K GA + +KNLD +D++ L D F FG + CKVA+ S G G V +++ + A +
Sbjct: 75 KVGAIKLVVKNLDPRMDDQQLRDIFGEFGTMTLCKVAS-----SIGVGLVTYESFDDAHA 129
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
A+ ++NGM LN +QV V R ER S + V+NL +E+ L + FG
Sbjct: 130 AMTQVNGMYLNGQQVQVH---RLPERPS---------LIVRNLPADASEESLAALCRPFG 177
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+ ++++A + G V D +DA ++ AL+G K + V + ERE E
Sbjct: 178 RVGVATIVQEAPEDAP-MGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAERECE 236
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
++ + ++ +G L +KN+D + DD+L+ELF+ FGTI S +MRD G S+G
Sbjct: 237 ------SAVAQRLERLQG-KLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKG 289
Query: 364 SGFVAFSTAEEASKALTEMNGKMV--VSKPLYVALAQRKEE 402
GFVA+ST E ASKA+ +G+ +++PL V + E
Sbjct: 290 YGFVAYSTTEAASKAMAATHGQTFDRLTRPLDVTIFTSSEH 330
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 172/349 (49%), Gaps = 34/349 (9%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+YV ++D +V L +F Q G +VS + RD S G G+V+Y A A A+ +
Sbjct: 471 IYVKNIDPAVELEDLQRVFGQFGAIVSSNIMRD-DAGISKGIGHVDYLHADAARAAVAAM 529
Query: 102 NFTPLN--GKPIRIMYSYRDPTIRKSGA--GNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ L G+P+R+ S DP R S ++ IKNL++SI+ AL D FS FG ILS
Sbjct: 530 DGKRLTATGQPLRV--SLPDPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSS 587
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
+ Q R V F +EE+ ++AI +NG ++N V P++RK R
Sbjct: 588 RTIET---QPRA-ALVDFLSEEACQNAIANINGAIVNGLPVTASPYVRKDRR-------- 635
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+VYV NL L +F + G I +T V RD GFV FD P + E
Sbjct: 636 --SVYVANLPANYNYVKLMALFADCGKIVTTIVPRD----FSTVGFVCFDQPA-SVELAE 688
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+G + +E YV + L+ T++ LY+ N+D S+DK
Sbjct: 689 RFHGHVLEGEELYVSR--------FPLQTDPAPPPHATSEVAPYHILYLTNVDFEASEDK 740
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
++EL + +GT+T+ V R +G SRG FV F+ E+ASKA ++G++
Sbjct: 741 VRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAKDALSGQI 789
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 188/409 (45%), Gaps = 70/409 (17%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE- 100
L + ++D+ ++D QL +LF G ++S+ + RD T +S GYG+V Y+ A++A+
Sbjct: 250 LVIKNMDVDMDDDQLEELFAPFGTIISLHIMRD-ETGKSKGYGFVAYSTTEAASKAMAAT 308
Query: 101 -----------LNFTPLNGKPIRIMY-SYRDPTIRKSGA--------GNIFIKNLDKSID 140
L+ T M+ + R +R N+ I+NL +SID
Sbjct: 309 HGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRKNLCIRNLGESID 368
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
K L F+ FG I +C V D +G+SR GFV F E A A+ +++G Q+ +
Sbjct: 369 EKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPSPGTQMPM 428
Query: 201 GPFLRKQERE-------------STADKTRFNN---------VYVKNLSETTTEDDLKKI 238
L + R+ S+ D+ + +YVKN+ +DL+++
Sbjct: 429 TVTLSHRARDAQDPPAPNASGKDSSTDEAEPDAEGQIRPRKLIYVKNIDPAVELEDLQRV 488
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
FG+FG I S+ +MRD G SK G V++ D A +V A++GK+
Sbjct: 489 FGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMDGKR--------------- 533
Query: 299 EREMELKGK-FEQSLKETADKFEGL---NLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
+ G+ SL + D+F + +L +KNL+ SI+ L++LFS FG I S + +
Sbjct: 534 ---LTATGQPLRVSLPDPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSSRTI 590
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ V F + E A+ +NG +V P+ + RK+ R
Sbjct: 591 E----TQPRAALVDFLSEEACQNAIANINGAIVNGLPVTASPYVRKDRR 635
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 150/299 (50%), Gaps = 31/299 (10%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
G + IKN+D +D+ L + F+ FG I+S + D G+S+GYGFV + E+A A+
Sbjct: 248 GKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAMAA 307
Query: 188 LNGMLLN------DKQVFV-----GPFL--RKQERESTADKTRF----NNVYVKNLSETT 230
+G + D +F G F R E A+ R N+ ++NL E+
Sbjct: 308 THGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRKNLCIRNLGESI 367
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
E L+ +F FG I + V+RD G+S+ GFV+F ++A+++V ++GK +
Sbjct: 368 DEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPSPGTQMP 427
Query: 291 VGKAQKKYEREME------LKGKFEQSLKETADKFEGLN-----LYVKNLDDSISDDKLK 339
+ R+ + GK + S E EG +YVKN+D ++ + L+
Sbjct: 428 MTVTLSHRARDAQDPPAPNASGK-DSSTDEAEPDAEGQIRPRKLIYVKNIDPAVELEDLQ 486
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS--KPLYVAL 396
+F +FG I S +MRD GIS+G G V + A+ A A+ M+GK + + +PL V+L
Sbjct: 487 RVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMDGKRLTATGQPLRVSL 545
>gi|123430889|ref|XP_001307992.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889649|gb|EAX95062.1| hypothetical protein TVAG_428650 [Trichomonas vaginalis G3]
Length = 537
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 149/271 (54%), Gaps = 21/271 (7%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L + + L + G+VV+V L R++ + +V ++ A +A+ E
Sbjct: 11 VHISNLPSGITTDFIKILLQECGEVVNVT----LKERQNGNFAFVTFDTPESALKAIKEF 66
Query: 102 NFTPLNGKPIRIMYSYRD-PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
N+T LNG PI I + ++ + KSG GN++++ LD I+ LH+ F T+G ++SCK+
Sbjct: 67 NYTKLNGSPIVITPTTQEYQNLIKSGEGNLYVRGLDVYIEVSQLHELFQTYGEVISCKLP 126
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--- 217
T + G ++GY +VQF + A+ A +LN ++N K++ V P+ +K+ + T+ +
Sbjct: 127 TGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPYKKKERPQKTSPASNPRG 186
Query: 218 -------FNNVYVKNL-SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
F N++++NL S E DL +F EFG++ ST ++ D GF N D
Sbjct: 187 APASDDVFTNIFIRNLPSNVRNETDLGNLFSEFGVVISTKMLPDG-----FSGFCNMIDH 241
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
D A R+++ALNGK D K V +A K ER
Sbjct: 242 DSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 14/275 (5%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+ I NL I + G +++ + Q+ + FV FD ESA AI + N
Sbjct: 11 VHISNLPSGITTDFIKILLQECGEVVNVTLKER---QNGNFAFVTFDTPESALKAIKEFN 67
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LN + + P QE ++ K+ N+YV+ L L ++F +G + S
Sbjct: 68 YTKLNGSPIVITP--TTQEYQNLI-KSGEGNLYVRGLDVYIEVSQLHELFQTYGEVISCK 124
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+ DG +K + +V F DP+DA ++ LN + K+ V +KK +
Sbjct: 125 LPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPYKKKERPQKTSPASNP 184
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDK-LKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
+ + D F N++++NL ++ ++ L LFSEFG + S K++ P+G S GF
Sbjct: 185 RGAPASDDVF--TNIFIRNLPSNVRNETDLGNLFSEFGVVISTKML--PDGFS---GFCN 237
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ A +A+ +NGK++ K L V A KEER
Sbjct: 238 MIDHDSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 22/192 (11%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
E ++DK V++ NL T D +K + E G + + + +G F FV FD P
Sbjct: 4 EQSSDKV----VHISNLPSGITTDFIKILLQECGEVVNVTLKERQNGN---FAFVTFDTP 56
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
+ A ++++ N K + + ++Y Q+L ++ + NLYV+ L
Sbjct: 57 ESALKAIKEFNYTKLNGSPIVITPTTQEY-----------QNLIKSGEG----NLYVRGL 101
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D I +L ELF +G + SCK+ +G+++G +V F +A KA E+N ++
Sbjct: 102 DVYIEVSQLHELFQTYGEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVING 161
Query: 390 KPLYVALAQRKE 401
K + V ++KE
Sbjct: 162 KKISVEPYKKKE 173
>gi|331224641|ref|XP_003324992.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309303982|gb|EFP80573.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 306
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 129/238 (54%), Gaps = 9/238 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDL + + QL +F+Q V +R+ +TR Y YV Y++A AT A+
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
E N T GKP R+M S S A N+F+K+L + A HDTF+ FG +LS K+
Sbjct: 89 EFNQTEFLGKPCRVMKSIHGAAKGLSEA-NVFVKHLPAKLSAIAFHDTFADFGEVLSSKL 147
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN----DKQVFVGPFLRKQERESTADK 215
A D L +GYGFVQ+ E A+ AI + NG L+ K + F++K+ R + +
Sbjct: 148 AIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPIKTSLFIKKENRIVSRE- 206
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NV+ +NLS T + K+ + ++G+ITS + DGK GF NF+ P AA
Sbjct: 207 --FKNVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTGFANFEKPSAAA 262
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 25/200 (12%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVM---RDADGKSKCFGFVNFDDPDDAARSV 276
+VYV +L TE+ L ++F + + + R+ + + + +V + D A ++
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFR-RAYAYVTYSSADAATAAI 87
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
N +F K V K S+ A N++VK+L +S
Sbjct: 88 REFNQTEFLGKPCRVMK-----------------SIHGAAKGLSEANVFVKHLPAKLSAI 130
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV----VSKPL 392
+ F++FG + S K+ D + +G GFV ++TAE+A KA+ E NG + +KP+
Sbjct: 131 AFHDTFADFGEVLSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPI 190
Query: 393 YVALAQRKEERRARLQFSQM 412
+L +KE R +F +
Sbjct: 191 KTSLFIKKENRIVSREFKNV 210
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 20/244 (8%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNI--LSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
++++ +L I + L FS + + K+ + R Y +V + + ++A +AI
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADK-TRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+ N + F+G R + A K NV+VK+L + F +FG +
Sbjct: 89 EFN------QTEFLGKPCRVMKSIHGAAKGLSEANVFVKHLPAKLSAIAFHDTFADFGEV 142
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S+ + D K +GFV + + A +++ NG D V A K + + +K
Sbjct: 143 LSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLD-----VEGATKPIKTSLFIK 197
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
+ + + +F+ N++ +NL I+ +K K+ +S++G ITS + +G G+G
Sbjct: 198 ----KENRIVSREFK--NVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTG 251
Query: 366 FVAF 369
F F
Sbjct: 252 FANF 255
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-LSTRRSLGYGYVNYNA 90
G A+ +++V L ++ +D F G+V+S ++ D L+ + GYG+V Y
Sbjct: 108 GAAKGLSEANVFVKHLPAKLSAIAFHDTFADFGEVLSSKLAIDHLNVPK--GYGFVQYAT 165
Query: 91 AHEATRALDELNFTPLN----GKPIRI-MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
A +A +A+ E N + L+ KPI+ ++ ++ I N+F +NL I +
Sbjct: 166 AEQAQKAIRETNGSTLDVEGATKPIKTSLFIKKENRIVSREFKNVFFRNLSTKITLEKFK 225
Query: 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181
T+S +G I S ++ G+ G GF F+ +A
Sbjct: 226 QTWSKYGVITSAFLSLGKDGKPTGTGFANFEKPSAA 261
>gi|62321453|dbj|BAD94856.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 126
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/150 (58%), Positives = 108/150 (72%), Gaps = 25/150 (16%)
Query: 497 MQPRMLPRGRIYRYPPG-CNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALA 555
MQ +M PRGR++RYP G DVP PYD+G + P+ GALA
Sbjct: 1 MQQQMHPRGRMFRYPQGRGGSGDVP-----------PYDMGN--------NMPLTIGALA 41
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S L+NA+PEQQRT+LGE LYPLV+Q+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKV
Sbjct: 42 SNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKV 101
Query: 616 AEAMEVLRNVAQQQATGPSPTDRVASLSLN 645
AEAM+VLR+VA A T+++ASL+L+
Sbjct: 102 AEAMDVLRSVAAGGA-----TEQLASLNLS 126
>gi|147863122|emb|CAN82975.1| hypothetical protein VITISV_026120 [Vitis vinifera]
Length = 213
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 92/129 (71%), Gaps = 11/129 (8%)
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
N YV + +IS + EF +VMRDPNGISRGSGFVAFSTA+EAS+ L +
Sbjct: 77 FNGYVLAYEFAISGIWKFKCLMEFNG----QVMRDPNGISRGSGFVAFSTAKEASRVLAD 132
Query: 382 MNGKMVVSKPLYVALAQRKEERRARL--QFSQMR-----PPVGPRMPMYPPVAPGLGQQL 434
MNGKMV SKPLYVALAQ KE+RR RL QFSQMR P VGPRM MYPP PGLGQQL
Sbjct: 133 MNGKMVASKPLYVALAQWKEDRRTRLQAQFSQMRPTAMAPSVGPRMSMYPPGTPGLGQQL 192
Query: 435 FYGQGPPII 443
FYGQGP ++
Sbjct: 193 FYGQGPQLL 201
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VMRD +G S+ GFV F +A+R + +NGK K YV AQ K +R L+ +F
Sbjct: 104 VMRDPNGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRLQAQFS 163
Query: 310 Q 310
Q
Sbjct: 164 Q 164
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
+F+DP+ A ++VEALNG K YV QK+ ER+ ELK KF++ E ++++G+NL
Sbjct: 3 SFEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNL 62
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
YVKNL D+I D +L++ F++FGTITS KVM +G S+G GFV F + EEA+KA+ EMN
Sbjct: 63 YVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNE 122
Query: 385 KMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGL 430
K++ ++PLYVALAQ+K++R+A+L M+ MP + + PG+
Sbjct: 123 KLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEH-RIGPGV 167
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 118/197 (59%), Gaps = 18/197 (9%)
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-------RFN-----NVY 222
F++ E+A+ A++ LNG K ++V ++ ER++ + R N N+Y
Sbjct: 4 FEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNLY 63
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
VKNL++ + L+K F +FG ITS VM DG+SK FGFV F P++AA+++ +N K
Sbjct: 64 VKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNEK 123
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-----GLNLYVKNLDDSISDDK 337
+ + YV AQKK +R+ +L ++ Q + D E G+NL++KNLD SI D+K
Sbjct: 124 LIEARPLYVALAQKKQDRKAQLASQYMQRTS-SRDMPEHRIGPGVNLFIKNLDKSIDDEK 182
Query: 338 LKELFSEFGTITSCKVM 354
L+E FS+FGTITS KV+
Sbjct: 183 LREEFSQFGTITSAKVV 199
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 16/139 (11%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNL +ID+ L F+ FG I S KV T G+S+G+GFV F + E A AI ++
Sbjct: 61 NLYVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEM 120
Query: 189 NGMLLNDKQVFVGPFLRKQERE-----------STADKTRFN-----NVYVKNLSETTTE 232
N L+ + ++V +KQ+R+ S+ D N+++KNL ++ +
Sbjct: 121 NEKLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSIDD 180
Query: 233 DDLKKIFGEFGIITSTAVM 251
+ L++ F +FG ITS V+
Sbjct: 181 EKLREEFSQFGTITSAKVV 199
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 25/146 (17%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNYNAAHE 93
++ +LYV +L +++D +L F Q G + S +V ++T RS G+G+V + + E
Sbjct: 56 RYQGVNLYVKNLADNIDDVRLRKEFAQFGTITSAKV---MTTEDGRSKGFGFVCFRSPEE 112
Query: 94 ATRALDELNFTPLNGKPIRIMY-------------------SYRDPTIRKSGAG-NIFIK 133
A +A+ E+N + +P+ + S RD + G G N+FIK
Sbjct: 113 AAKAIVEMNEKLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIK 172
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKV 159
NLDKSID++ L + FS FG I S KV
Sbjct: 173 NLDKSIDDEKLREEFSQFGTITSAKV 198
>gi|388492458|gb|AFK34295.1| unknown [Medicago truncatula]
Length = 107
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/103 (76%), Positives = 91/103 (88%), Gaps = 4/103 (3%)
Query: 548 PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLES 607
PMQ ALA+ALANA PEQQRT+LGE LYPLV+++EH AAKVTGMLLEMDQ EVLHL+ES
Sbjct: 9 PMQ--ALATALANAPPEQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEMDQPEVLHLIES 66
Query: 608 PEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 650
PEALK KVAEA++VLRNVAQQQ+ SPTD++ASLSLNDN+ S
Sbjct: 67 PEALKTKVAEAVDVLRNVAQQQSN--SPTDQLASLSLNDNLES 107
>gi|47198027|emb|CAF89020.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 199 FVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
FVG F ++ERE + +F NVY+KN E T++ LK++F FG S VM+D G
Sbjct: 1 FVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERG 60
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
+S+ FGFVNF DA ++V+ +NG + + K YVG+AQK+ ER+ ELK KFE ++
Sbjct: 61 RSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRI 120
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
+++G+NLYVKNLDD I D++L++ F+ +GTITS KV
Sbjct: 121 QRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKV 157
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 14/135 (10%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKN + ++ L + FS FG LS +V D G+SRG+GFV F + A+ A+D++
Sbjct: 24 NVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEM 83
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFN-------------NVYVKNLSETTTEDDL 235
NG LN K ++VG ++ ER+ K +F N+YVKNL + ++ L
Sbjct: 84 NGTELNGKVIYVGRAQKRLERQGEL-KRKFELIKQDRIQRYQGVNLYVKNLDDGIDDERL 142
Query: 236 KKIFGEFGIITSTAV 250
+K F +G ITS V
Sbjct: 143 RKEFAPYGTITSAKV 157
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 10/119 (8%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
+VG + + ERE EL K +LK T N+Y+KN + +D+KLKE+FS FG
Sbjct: 1 FVGNFKSRKEREEELGSK---ALKFT-------NVYIKNFGEDYTDEKLKEVFSAFGRTL 50
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
S +VM+D G SRG GFV F+ +A KA+ EMNG + K +YV AQ++ ER+ L+
Sbjct: 51 SVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELK 109
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + D +L ++F+ G+ +SVRV +D RS G+G+VN+ +A +A+D
Sbjct: 23 TNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHGDAQKAVD 81
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N T LNGK I R + I++ N+++KNLD ID++
Sbjct: 82 EMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDDER 141
Query: 144 LHDTFSTFGNILSCKV 159
L F+ +G I S KV
Sbjct: 142 LRKEFAPYGTITSAKV 157
>gi|170042459|ref|XP_001848942.1| polyadenylate-binding protein [Culex quinquefasciatus]
gi|167866018|gb|EDS29401.1| polyadenylate-binding protein [Culex quinquefasciatus]
Length = 339
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 142/258 (55%), Gaps = 37/258 (14%)
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS+ GN+LSCKVA D G S+GY FV F SA SAID++NG+ +N + V P
Sbjct: 2 FSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAVSPL---- 57
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
F ++V+N + T+ L+++F +G I + V KS+ GF+ +D
Sbjct: 58 ----------FTKLHVRNFGDRLTQTTLQELFAPYGSIKAHGV------KSRGCGFIIYD 101
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKY---EREMELKGKFEQSLKETADKFEGLNL 324
P+ A ++EALNGK D GKA + ER ++ + + E + +
Sbjct: 102 SPEAAGHALEALNGKALSD-----GKALRVVPVPERVLQPAPRLAEG--------EAVQV 148
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
+V+NLD SI + L ELF+ +G + ++++ G S+G GFV +++ E+A++A+ EMN
Sbjct: 149 FVRNLDASIDNRHLGELFAPYGDVQRGFIVKE-QGKSKGFGFVTYASGEQAARAIVEMND 207
Query: 385 KMVVSKPLYVALAQRKEE 402
+ V K +YV LA+ KE+
Sbjct: 208 REVAGKRIYVVLARGKEK 225
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 48/299 (16%)
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
+F+ +G V+S +V D+ S GY +V + A A A+D +N +NG + +
Sbjct: 1 MFSSVGNVLSCKVALDIQGC-SKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAV----- 54
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
P K + ++N + L + F+ +G+I + V +SRG GF+ +D+
Sbjct: 55 SPLFTK-----LHVRNFGDRLTQTTLQELFAPYGSIKAHGV------KSRGCGFIIYDSP 103
Query: 179 ESAKSAIDKLNGMLLNDKQVF---------VGPFLRKQERESTADKTRFNNVYVKNLSET 229
E+A A++ LNG L+D + + P R E E+ V+V+NL +
Sbjct: 104 EAAGHALEALNGKALSDGKALRVVPVPERVLQPAPRLAEGEAV-------QVFVRNLDAS 156
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
L ++F +G + ++++ GKSK FGFV + + AAR++ +N ++ K
Sbjct: 157 IDNRHLGELFAPYGDVQRGFIVKE-QGKSKGFGFVTYASGEQAARAIVEMNDREVAGKRI 215
Query: 290 YV----GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
YV GK + K E++ + E A + +L +K + D D+LK L +
Sbjct: 216 YVVLARGKEKPKPVSEVD-------AGHEPATTTDDTSLLLKTITDP---DELKSLLAH 264
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 15/185 (8%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
NG+A NG A + T L+V + + + L +LF G + + V +S
Sbjct: 42 VNGLAVNGA-SLAVSPLFTKLHVRNFGDRLTQTTLQELFAPYGSIKAHGV-------KSR 93
Query: 82 GYGYVNYNAAHEATRALDELNFTPL-NGKPIRIM-----YSYRDPTIRKSGAGNIFIKNL 135
G G++ Y++ A AL+ LN L +GK +R++ P + + A +F++NL
Sbjct: 94 GCGFIIYDSPEAAGHALEALNGKALSDGKALRVVPVPERVLQPAPRLAEGEAVQVFVRNL 153
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D SIDN+ L + F+ +G++ + + G+S+G+GFV + + E A AI ++N +
Sbjct: 154 DASIDNRHLGELFAPYGDVQRGFIVKEQ-GKSKGFGFVTYASGEQAARAIVEMNDREVAG 212
Query: 196 KQVFV 200
K+++V
Sbjct: 213 KRIYV 217
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 124/331 (37%), Gaps = 67/331 (20%)
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-----VSKPLYVA 395
+FS G + SCKV D G S+G FV F A A+ +NG V PL+
Sbjct: 1 MFSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAVSPLFTK 60
Query: 396 LAQRK-EERRARLQFSQMRPPVGP-----------RMPMY-PPVAPGL------GQQLFY 436
L R +R + ++ P G +Y P A G G+ L
Sbjct: 61 LHVRNFGDRLTQTTLQELFAPYGSIKAHGVKSRGCGFIIYDSPEAAGHALEALNGKALSD 120
Query: 437 GQGPPIIP-PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPG----------------- 478
G+ ++P P+ +L G FV + N+ G
Sbjct: 121 GKALRVVPVPERVLQPAPRLAEGEAVQVFVRNLDASIDNRHLGELFAPYGDVQRGFIVKE 180
Query: 479 -GRRSGTGPM-----QQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGP 532
G+ G G + +QA + I M R + RIY PV+ V G P
Sbjct: 181 QGKSKGFGFVTYASGEQAARAIVEMNDREVAGKRIYVVLARGKEKPKPVSEVDAGHEPA- 239
Query: 533 YDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQ-LEHDNAAKVT- 590
+ T L + + P++ ++LL LYPLV + A ++T
Sbjct: 240 -------------TTTDDTSLLLKTITD--PDELKSLLAHQLYPLVKACVNAQTAGRITF 284
Query: 591 GMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
M+ + ++++ LL+ P+ L+ VA+++ +
Sbjct: 285 QMVRQHSASDLVALLKDPKRLQT-VAKSVAI 314
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ ++V +LD S+++ L +LF G V + ++ +S G+G+V Y + +A RA+
Sbjct: 145 AVQVFVRNLDASIDNRHLGELFAPYGDVQRGFIVKEQG--KSKGFGFVTYASGEQAARAI 202
Query: 99 DELNFTPLNGKPIRIMYS 116
E+N + GK I ++ +
Sbjct: 203 VEMNDREVAGKRIYVVLA 220
>gi|328851168|gb|EGG00325.1| hypothetical protein MELLADRAFT_28015 [Melampsora larici-populina
98AG31]
Length = 223
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 119/216 (55%), Gaps = 14/216 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+L VN L ++F+Q V++ RVC D T++ GYGYV+Y EA AL E
Sbjct: 1 SLYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALRE 60
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
N L GKPIR+M SY N+FIKNL KS LHD+F FG ILS K++
Sbjct: 61 FNHINLKGKPIRVMRSYSGKPKEFPSEANLFIKNLPKSFTPINLHDSFERFGKILSSKIS 120
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL---------NDKQVFVGPFLRKQERES 211
D LG S+GYG++QF+N + + AI N N K++ V +++ ++R
Sbjct: 121 FDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKLKVTSYVKPEDR-- 178
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
K +F NV+ +NL TE+ K EFG ITS
Sbjct: 179 ---KPKFTNVFFRNLPLDFTEESFSKYASEFGKITS 211
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 13/223 (5%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKL 188
+++ NL ++ + L + FS +++ +V D + Q RGYG+V + E A A+ +
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N + L K + V + +E ++ N+++KNL ++ T +L F FG I S+
Sbjct: 62 NHINLKGKPIRVMRSYSGKPKEFPSEA----NLFIKNLPKSFTPINLHDSFERFGKILSS 117
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ D G SK +G++ F++P D+ ++ N +FD K+ K KK K
Sbjct: 118 KISFDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKL--------KV 169
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
+K K + N++ +NL +++ + SEFG ITS
Sbjct: 170 TSYVKPEDRKPKFTNVFFRNLPLDFTEESFSKYASEFGKITSL 212
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 25/168 (14%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
+YV NL++ DL IF + +I + + K + +G+V++ P++A ++
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL----NLYVKNLDDSISD 335
N + LKGK + ++ + K + NL++KNL S +
Sbjct: 62 N--------------------HINLKGKPIRVMRSYSGKPKEFPSEANLFIKNLPKSFTP 101
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L + F FG I S K+ D G S+G G++ F +++++A+ N
Sbjct: 102 INLHDSFERFGKILSSKISFDQLGNSKGYGYIQFENPKDSNEAILNSN 149
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEM 382
LYV NL D ++ L +FS+ + + +V D RG G+V+++T EEA AL E
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 383 NGKMVVSKPLYV 394
N + KP+ V
Sbjct: 62 NHINLKGKPIRV 73
>gi|331243001|ref|XP_003334145.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313135|gb|EFP89726.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 142/268 (52%), Gaps = 11/268 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDL ++ + +L +F+Q V+SV++ S + Y Y+ Y++A + A+
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGPRAYAYIAYSSADKVDEAIR 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
E N T GKP R+M R ++ N+F+++L ++ A HDTF+ FG ILS ++
Sbjct: 89 EYNHTKFAGKPCRVMKPKRG-IVKGPPEANVFVQDLPLALSALAFHDTFAEFGEILSSRL 147
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN----DKQVFVGPFLRKQERESTADK 215
+ D S+GYGF+Q+ E A++AI + NG LL+ +K + F++K S +
Sbjct: 148 SVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLDVAGGEKPIRTSIFVKKDAPSSPTSR 207
Query: 216 T---RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
F N++ KNL T + K + ++G+ITS + D DGK F +F + DA
Sbjct: 208 AAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTAFASFQNHSDA 267
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYER 300
R ++A K D E Y +A K ER
Sbjct: 268 VRVIKATQRKGPD--EVYAVRALSKAER 293
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 12/253 (4%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVA--TDSLGQSRGYGFVQFDNEESAKSAID 186
++++ +L +I + L FS +LS ++ + S+ R Y ++ + + + AI
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGPRAYAYIAYSSADKVDEAIR 88
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+ N K P + + NV+V++L + F EFG I
Sbjct: 89 EYNHTKFAGK-----PCRVMKPKRGIVKGPPEANVFVQDLPLALSALAFHDTFAEFGEIL 143
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ + D + SK +GF+ + + A ++ NG D V +K + +K
Sbjct: 144 SSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLD-----VAGGEKPIRTSIFVKK 198
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
S A E NL+ KNL I+ + K +S++G ITS + D +G G+ F
Sbjct: 199 DAPSSPTSRAAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTAF 258
Query: 367 VAFSTAEEASKAL 379
+F +A + +
Sbjct: 259 ASFQNHSDAVRVI 271
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM---RDADGKSKCFGFVNFDDPDDAARS 275
++VYV +L TE++L K+F + + S + R G + + ++ + D +
Sbjct: 28 HSVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKG-PRAYAYIAYSSADKVDEA 86
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
+ N KF K V K ++ +KG E N++V++L ++S
Sbjct: 87 IREYNHTKFAGKPCRVMKPKRGI-----VKGPPEA------------NVFVQDLPLALSA 129
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
+ F+EFG I S ++ D +S+G GF+ ++T E+A A+ E NG ++
Sbjct: 130 LAFHDTFAEFGEILSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLL 181
>gi|410074177|ref|XP_003954671.1| hypothetical protein KAFR_0A00980 [Kazachstania africana CBS 2517]
gi|372461253|emb|CCF55536.1| hypothetical protein KAFR_0A00980 [Kazachstania africana CBS 2517]
Length = 642
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 185/389 (47%), Gaps = 50/389 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T L++G L V +S L +LFN+ + SV++C D T++SLGYGY+N++ + E R ++
Sbjct: 95 TPLFIGGLGPHVTESMLKELFNKFSSLYSVKICYDSETKKSLGYGYLNFSGSDEIDRVIE 154
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILS 156
E N+T + G I+IM S R+ RK+ NIF NL + + + +DTF +G ILS
Sbjct: 155 EFNYTEVFGSEIKIMPSLRNSLYRKNIGTNIFFSNLPLENSELTTRVFYDTFKKYGKILS 214
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK--------QE 208
CK L + GFV +++++ A+ I+K N ++ G K ++
Sbjct: 215 CK-----LDHRKNIGFVYYEDDKVAREVIEKYNNTTFFGAKILCGLHFDKELRNFPDFEK 269
Query: 209 RESTADK------------------TRF-------NNVYVKNLSETTTEDDLKKIFGEFG 243
R+S DK T+ N V+VKNL TTED++ F G
Sbjct: 270 RKSYLDKHIILEDELNTVEGKTSMLTKIKSSLPHPNAVFVKNLPIDTTEDEILDFFSVVG 329
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+ S + KS+ + F+ + D R++E L+GKK+ D++ V KA+ + ++
Sbjct: 330 PVKSVFTSKVLKFKSE-WAFITYKKGSDTERAIEELDGKKYKDRKISVTKAKARQQQHHH 388
Query: 304 LKGKFEQS----LKETADKFEGLNLYVKNLDDSISDDKLKEL-FSEFGTITSCKVMRDPN 358
+ + +Q +K+ + K + + NL + + L EL E K+
Sbjct: 389 HQQQQQQQQQPIVKKASTK---TTIQLNNLSTICTKEFLVELCIQEHLKFDRLKITEYEP 445
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMV 387
GF F T ++A K +NGK+V
Sbjct: 446 DSGTFKGFATFKTKDDAKKFYNYLNGKLV 474
>gi|14318545|ref|NP_116678.1| Pes4p [Saccharomyces cerevisiae S288c]
gi|1172434|sp|P39684.2|PES4_YEAST RecName: Full=Protein PES4; AltName: Full=DNA polymerase epsilon
suppressor 4
gi|836778|dbj|BAA09262.1| DNA polymerase epsilon suppressor 4 [Saccharomyces cerevisiae]
gi|151940784|gb|EDN59171.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345636|gb|EDZ72395.1| YFR023Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256268849|gb|EEU04202.1| Pes4p [Saccharomyces cerevisiae JAY291]
gi|259146215|emb|CAY79474.1| Pes4p [Saccharomyces cerevisiae EC1118]
gi|285811918|tpg|DAA12463.1| TPA: Pes4p [Saccharomyces cerevisiae S288c]
gi|392299695|gb|EIW10788.1| Pes4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 611
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 184/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L +F + VS +VC D T++SLG+GY+N+ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NGK IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADK 215
L + GFV F++E++A++ I N K++ G K+ R K
Sbjct: 213 -----LDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 216 TRF--------------------------------NNVYVKNLSETTTEDDLKKIFGEFG 243
+R N++++KNL TT DD+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + +A + FV + + D+ ++++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEER--- 383
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGIS 361
KF +S K + L+++NL + + LK L + I K+ D S
Sbjct: 384 --AKFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
SGF+ F E+A++ +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 130/301 (43%), Gaps = 37/301 (12%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L F + + +S KV DS+ + S G+G++ F+++E A+ A+++L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N K++ + P LR +T K NV+ NL + T F +G I
Sbjct: 153 NYTKVNGKEIRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S + D GFV F+D A ++ N F K+ G K R +
Sbjct: 209 LSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 303 ---------ELKGKFEQSLKETADK---FEGLNLY--------VKNLDDSISDDKLKELF 342
E + EQSL E K E N+Y +KNL + D + F
Sbjct: 264 ETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
SE G I S + + + FV + + ++ KA+ N K L V AQ KEE
Sbjct: 324 SEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 403 R 403
R
Sbjct: 383 R 383
>gi|190406596|gb|EDV09863.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 611
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 184/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L +F + VS +VC D T++SLG+GY+N+ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NGK IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADK 215
L + GFV F++E++A++ I N K++ G K+ R K
Sbjct: 213 -----LDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 216 TRF--------------------------------NNVYVKNLSETTTEDDLKKIFGEFG 243
+R N++++KNL TT DD+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + +A + FV + + D+ ++++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEER--- 383
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGIS 361
KF +S K + L+++NL + + LK L + I K+ D S
Sbjct: 384 --AKFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
SGF+ F E+A++ +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 130/301 (43%), Gaps = 37/301 (12%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L F + + +S KV DS+ + S G+G++ F+++E A+ A+++L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N K++ + P LR +T K NV+ NL + T F +G I
Sbjct: 153 NYTKVNGKEIRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S + D GFV F+D A ++ N F K+ G K R +
Sbjct: 209 LSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 303 ---------ELKGKFEQSLKETADK---FEGLNLY--------VKNLDDSISDDKLKELF 342
E + EQSL E K E N+Y +KNL + D + F
Sbjct: 264 ETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
SE G I S + + + FV + + ++ KA+ N K L V AQ KEE
Sbjct: 324 SEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 403 R 403
R
Sbjct: 383 R 383
>gi|123446312|ref|XP_001311908.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893735|gb|EAX98978.1| hypothetical protein TVAG_431870 [Trichomonas vaginalis G3]
Length = 574
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 151/277 (54%), Gaps = 19/277 (6%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++V +L +V L LF++ G V++V L + + Y +V++ EA A+ +
Sbjct: 16 IHVANLPPTVTVEFLKSLFSEAGTVINVI----LKQKPTSCYAFVDFTLQEEAETAVRDF 71
Query: 102 NFTPLNGKPIRIMYSYRDPTIR--KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N+T LNG+ I I+ P + SG GN+FIK LD+SID LH+ F+ +G I+SC++
Sbjct: 72 NYTKLNGETI-IVTRTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCRI 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD----- 214
T + GQ RG+G+VQF +E A+ A+ +L +N K + +GPFL++ ER +A
Sbjct: 131 PTLN-GQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERPLSAAFQNNL 189
Query: 215 KTRFNNVYVKNLSET-TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+ F NV+VKNL + T L ++F EFG +TS ++ + + G+V + + A
Sbjct: 190 DSSFTNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVMMSEHEAAV 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
R+V L G+ K V ++ ER +K E+
Sbjct: 245 RAVVGLCGRTIFGKRLSVCRSLSPAERANFIKKPIEE 281
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 20/275 (7%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I + NL ++ + L FS G +++ + + Y FV F +E A++A+ N
Sbjct: 16 IHVANLPPTVTVEFLKSLFSEAGTVINVILKQKP---TSCYAFVDFTLQEEAETAVRDFN 72
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LN + + V R +A + N+++K L E+ L ++F +G I S
Sbjct: 73 YTKLNGETIIVT---RTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCR 129
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+ +G+ + FG+V F +DA +++ L + K +G K+ ER L F+
Sbjct: 130 I-PTLNGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERP--LSAAFQ 186
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDD-KLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
+L + N++VKNL D+I+ L LF EFG +TS +++ + R G+V
Sbjct: 187 NNLDSSFT-----NVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVM 236
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
S E A +A+ + G+ + K L V + ER
Sbjct: 237 MSEHEAAVRAVVGLCGRTIFGKRLSVCRSLSPAER 271
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 29/190 (15%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N ++V NL T T + LK +F E G + + + + + C+ FV+F ++A +V
Sbjct: 14 NGIHVANLPPTVTVEFLKSLFSEAGTVINVILKQKP---TSCYAFVDFTLQEEAETAVRD 70
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-----NLYVKNLDDSI 333
N K + + V + TA + NL++K LD+SI
Sbjct: 71 FNYTKLNGETIIVTRT--------------------TAPVVSAISSGQGNLFIKGLDESI 110
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+L ELF+ +G I SC++ NG RG G+V F E+A A+ E+ V KP+
Sbjct: 111 DCLQLHELFANYGEIVSCRIPTL-NGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQ 169
Query: 394 VALAQRKEER 403
+ ++ ER
Sbjct: 170 IGPFLKRSER 179
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 27/184 (14%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++ LD S++ QL++LF G++VS R+ R G+GYV + +A A+ E
Sbjct: 100 NLFIKGLDESIDCLQLHELFANYGEIVSCRIPTLNGQPR--GFGYVQFLKQEDAEHAMKE 157
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRK--------------SGAGNIFIKNLDKSIDN-KALH 145
L + +NGKPI+I P +++ S N+F+KNL +I+ +L
Sbjct: 158 LADSTVNGKPIQI-----GPFLKRSERPLSAAFQNNLDSSFTNVFVKNLPDNINTLLSLL 212
Query: 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205
F FG++ S ++ + R G+V E+A A+ L G + K++ V L
Sbjct: 213 RLFHEFGDVTSARIVPE-----RHIGYVMMSEHEAAVRAVVGLCGRTIFGKRLSVCRSLS 267
Query: 206 KQER 209
ER
Sbjct: 268 PAER 271
>gi|440302784|gb|ELP95091.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 546
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 179/351 (50%), Gaps = 23/351 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+++V L +V DS L + + +VVS+ V ++ S Y+N + A R +
Sbjct: 22 TIFVSGLTNNVTDSLLSSVVMEKFPTEVVSIHVTKNES-HFDTPIAYINMSTHDAAKRVI 80
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
LN ++GKPI + ++ +D R N+F+KN+ KS++ K L D FS G LS K
Sbjct: 81 STLNGVMVDGKPINMFWALKDFKQRTDTQTNLFVKNIKKSVNQKELQDVFSAIGETLSVK 140
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFLRKQERESTADKTR 217
++ + G+S G+G+V++ E+ ++A+DK + + ++ FV KQ +K+R
Sbjct: 141 LSLNEKGESNGFGYVKYRTLEATQAALDKSDELKAKIGEETFVVQKFEKQ------NKSR 194
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTA------VMRDADGKSKCFGFVNFDDPDD 271
N+YV N+ + TE+ K F FG I T+ + + K GFV+F++ +D
Sbjct: 195 KTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAKGFVDFENEED 254
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
AA++V A + E V + K ER E K K + K++ NLYV L +
Sbjct: 255 AAKAVSAPKNSVLGNGEIVVAYYKNKEERRREWKAKTAEVKANIKGKYKDFNLYVDTLKE 314
Query: 332 SISDDKLKELFSEFGTITSCKVM---RDPNGISRGSGFVAFSTAEEASKAL 379
SI++ +++E E G I S + R P G++ ++ ++TAE A+ A+
Sbjct: 315 SITEKEIREGLGEEGEIYSLSIRWVDRKPTGVA----YLCYTTAEGANNAI 361
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 22/235 (9%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R T+L+V ++ SVN +L D+F+ +G+ +SV++ + S G+GYV Y
Sbjct: 105 RTDTQTNLFVKNIKKSVNQKELQDVFSAIGETLSVKLSLN-EKGESNGFGYVKYRTLEAT 163
Query: 95 TRALDELN-FTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
ALD+ + G+ ++ + KS N+++ N+DK + + F TFG
Sbjct: 164 QAALDKSDELKAKIGEETFVVQKFEKQN--KSRKTNLYVYNIDKKVTEEQFIKYFETFGP 221
Query: 154 ILSCK------VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
I + + GFV F+NEE A A+ +L + ++ V + K+
Sbjct: 222 IRKTSDKKPQVLFVSEETKDTAKGFVDFENEEDAAKAVSAPKNSVLGNGEIVVAYYKNKE 281
Query: 208 ERE-----STAD-------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
ER TA+ K + N+YV L E+ TE ++++ GE G I S ++
Sbjct: 282 ERRREWKAKTAEVKANIKGKYKDFNLYVDTLKESITEKEIREGLGEEGEIYSLSI 336
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 134/297 (45%), Gaps = 43/297 (14%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
+ TI SG N N+ S+ + + + F T ++S V + ++
Sbjct: 20 NKTIFVSGLTN----NVTDSLLSSVVMEKFPT--EVVSIHVTKNESHFDTPIAYINMSTH 73
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
++AK I LNG++++ K + + L K ++ T +T N++VKN+ ++ + +L+ +
Sbjct: 74 DAAKRVISTLNGVMVDGKPINMFWAL-KDFKQRTDTQT---NLFVKNIKKSVNQKELQDV 129
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F G S + + G+S FG+V + R++EA Q
Sbjct: 130 FSAIGETLSVKLSLNEKGESNGFGYVKY-------RTLEA---------------TQAAL 167
Query: 299 EREMELKGKF-EQSLK----ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI--TSC 351
++ ELK K E++ E +K NLYV N+D +++++ + F FG I TS
Sbjct: 168 DKSDELKAKIGEETFVVQKFEKQNKSRKTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSD 227
Query: 352 K----VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
K + GFV F E+A+KA++ ++ + + VA + KEERR
Sbjct: 228 KKPQVLFVSEETKDTAKGFVDFENEEDAAKAVSAPKNSVLGNGEIVVAYYKNKEERR 284
>gi|452239|dbj|BAA05461.1| PES4 PAB-like protein [Saccharomyces cerevisiae]
Length = 555
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 184/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L +F + VS +VC D T++SLG+GY+N+ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCIDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NGK IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADK 215
L + GFV F++E++A++ I N K++ G K+ R K
Sbjct: 213 -----LDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 216 TRF--------------------------------NNVYVKNLSETTTEDDLKKIFGEFG 243
+R N++++KNL TT DD+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + +A + FV + + D+ ++++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEER--- 383
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGIS 361
KF +S K + L+++NL + + LK L + I K+ D S
Sbjct: 384 --AKFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
SGF+ F E+A++ +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 130/301 (43%), Gaps = 37/301 (12%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L F + + +S KV DS+ + S G+G++ F+++E A+ A+++L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCIDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N K++ + P LR +T K NV+ NL + T F +G I
Sbjct: 153 NYTKVNGKEIRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S + D GFV F+D A ++ N F K+ G K R +
Sbjct: 209 LSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 303 ---------ELKGKFEQSLKETADK---FEGLNLY--------VKNLDDSISDDKLKELF 342
E + EQSL E K E N+Y +KNL + D + F
Sbjct: 264 ETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
SE G I S + + + FV + + ++ KA+ N K L V AQ KEE
Sbjct: 324 SEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 403 R 403
R
Sbjct: 383 R 383
>gi|349577937|dbj|GAA23104.1| K7_Pes4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 611
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 184/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L ++F + VS +VC D T++SLG+GY+N+ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKEIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NGK IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADK 215
L + GFV F++E++A++ I N K++ G K+ R K
Sbjct: 213 -----LDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 216 TRF--------------------------------NNVYVKNLSETTTEDDLKKIFGEFG 243
+R N++++KNL TT DD+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + +A + FV + + D+ ++++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEER--- 383
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGIS 361
KF +S K + L+++NL + + LK L + I K+ D S
Sbjct: 384 --AKFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
SG + F E+A++ +N ++V
Sbjct: 434 TYSGLIKFRNFEDATRIFNFLNNRLV 459
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 131/301 (43%), Gaps = 37/301 (12%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L + F + + +S KV DS+ + S G+G++ F+++E A+ A+++L
Sbjct: 93 LFIGDLHETVTEETLKEIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N K++ + P LR +T K NV+ NL + T F +G I
Sbjct: 153 NYTKVNGKEIRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S + D GFV F+D A ++ N F K+ G K R +
Sbjct: 209 LSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 303 ---------ELKGKFEQSLKETADK---FEGLNLY--------VKNLDDSISDDKLKELF 342
E + EQSL E K E N+Y +KNL + D + F
Sbjct: 264 ETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
SE G I S + + + FV + + ++ KA+ N K L V AQ KEE
Sbjct: 324 SEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 403 R 403
R
Sbjct: 383 R 383
>gi|320581035|gb|EFW95257.1| polyadenylate-binding protein [Ogataea parapolymorpha DL-1]
Length = 541
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 168/351 (47%), Gaps = 66/351 (18%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181
++K GN++++ L + + L FS +G ++SCK+ D G S+GYGF+ F + A
Sbjct: 89 LKKQLPGNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSKGYGFINFADRIEA 148
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
+ AID LNG+ ++ +FV + K++R E K ++ N+YVKN + T++ L ++F
Sbjct: 149 QKAIDNLNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVF 208
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY---VGKAQK 296
G++G + S + + ++ + F+NF +DA R+ E L+G F+ Y +GKA++
Sbjct: 209 GQYGDVESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDG--FEIAPGYRLQLGKAER 266
Query: 297 KYEREMELKGKF------------------------------EQSLKETAD-------KF 319
+ +R + + +L TA ++
Sbjct: 267 RKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQY 326
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-------------------NGI 360
+ NLY+ +L D L ELF+ FG I S K+M P G
Sbjct: 327 QDSNLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGR 386
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMV-VSKPLYVALAQRKEER--RARLQ 408
SRG GFV F+ +ASKAL MNG V S L V+ AQRKE + + RL
Sbjct: 387 SRGFGFVCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLH 437
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 14/218 (6%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YV+ L TTT DDL +IF +G + S ++ D G SK +GF+NF D +A ++++ L
Sbjct: 96 NLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSKGYGFINFADRIEAQKAIDNL 155
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG D +V K +R EL+ + K + NLYVKN D ++ +KL
Sbjct: 156 NGVNVDGNHLFVNHHISKRDRLKELEMR----------KLKYTNLYVKNFPDDLTKEKLA 205
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
++F ++G + S + + +RG F+ F + E+A +A ++G + P Y +
Sbjct: 206 QVFGQYGDVESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDGFEIA--PGYRLQLGK 263
Query: 400 KEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQLF 435
E R+ R+ Q + +P P P Y P P L+
Sbjct: 264 AERRKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNLY 301
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 149/346 (43%), Gaps = 79/346 (22%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L + L +F++ G +VS ++ D S GYG++N+ EA +A+D
Sbjct: 96 NLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYD-DFGVSKGYGFINFADRIEAQKAIDN 154
Query: 101 LNFTPLNGKPIRIMY--SYRDP----TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
LN ++G + + + S RD +RK N+++KN + + L F +G++
Sbjct: 155 LNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDV 214
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQER---E 210
S + + +RGY F+ F + E A A + L+G + ++ +G R+++R +
Sbjct: 215 ESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDGFEIAPGYRLQLGKAERRKDRMQNQ 274
Query: 211 STADKTRF---------------NNVYV-------KNLSETTT----------------- 231
+ K + NN+Y NL T T
Sbjct: 275 MNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQYQDSNLYII 334
Query: 232 -------EDDLKKIFGEFGIITSTAVM-------------------RDADGKSKCFGFVN 265
+ DL ++F FG I S +M + +G+S+ FGFV
Sbjct: 335 HLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGRSRGFGFVC 394
Query: 266 FDDPDDAARSVEALNGKKFDDKE-WYVGKAQKKYEREMELKGKFEQ 310
F+ P DA++++ ++NG + DD V AQ+K E + E KG+
Sbjct: 395 FNKPLDASKALVSMNGYRVDDSHVLEVSFAQRK-ENKFE-KGRLHH 438
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 83/285 (29%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
+ R+ T+LYV + + +L +F Q G V SV + + + + GY ++N+ +
Sbjct: 181 EMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQG-TGNHNRGYAFINFKSHE 239
Query: 93 EATRA---LDELNFTPLNGKPIRI-------------MYSYR------------------ 118
+A RA LD P G +++ M SY+
Sbjct: 240 DAVRAQENLDGFEIAP--GYRLQLGKAERRKDRMQNQMNSYKPNYLPFQPQYMPPQPEHS 297
Query: 119 -----------DPTIRKSGAG-----------NIFIKNLDKSIDNKALHDTFSTFGNILS 156
D + + G N++I +L ++ L++ F+ FG I+S
Sbjct: 298 NNLYPSFIVSPDSNLISTATGLPIAGPQYQDSNLYIIHLPLEFKDQDLYELFAPFGQIMS 357
Query: 157 CKVAT----DSL---------------GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
K+ T DS G+SRG+GFV F+ A A+ +NG ++D
Sbjct: 358 AKIMTYPPNDSAVIDEGEEDTESKSREGRSRGFGFVCFNKPLDASKALVSMNGYRVDDSH 417
Query: 198 VFVGPFLRKQERESTADKTR---FNNVYVKNLSETTTEDDLKKIF 239
V F Q +E+ +K R +N ++ N ++ K+ F
Sbjct: 418 VLEVSF--AQRKENKFEKGRLHHYNQNHLGNFYNYLNQNFTKRSF 460
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 19 SPATNGIANNGGVGDAR-QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC----- 72
SP +N I+ G+ A Q+ ++LY+ L L D LY+LF GQ++S ++
Sbjct: 307 SPDSNLISTATGLPIAGPQYQDSNLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPN 366
Query: 73 ---------RDLSTR----RSLGYGYVNYNAAHEATRALDELN 102
D ++ RS G+G+V +N +A++AL +N
Sbjct: 367 DSAVIDEGEEDTESKSREGRSRGFGFVCFNKPLDASKALVSMN 409
>gi|401625916|gb|EJS43897.1| pes4p [Saccharomyces arboricola H-6]
Length = 611
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 185/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L ++F + VS +VC D T++SLG+GY+N++ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NGK +RIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTEINGKEVRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADK 215
L + GFV F++E++A++ I N K++ G K+ R K
Sbjct: 213 -----LDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 216 TRF--------------------------------NNVYVKNLSETTTEDDLKKIFGEFG 243
+R N++++KNL TT DD+ F E G
Sbjct: 268 SRLDSETIIEKEQALNDKKVQRNDGDSKNNLSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + A + F+ + +D+ R+++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSTATKVKYLWAFITYKSGEDSERAIKRYNNFYFRGKKLLVARAQDKEER--- 383
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGIS 361
KF +S K + L+++NL + + LK L + I K+ D +
Sbjct: 384 --AKFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQMDGYNENSA 433
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
SG++ F E+A++ +N ++V
Sbjct: 434 TYSGYIKFKNFEDATRIFNFLNNRLV 459
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 132/303 (43%), Gaps = 41/303 (13%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L + F F + +S KV DS+ + S G+G++ FD++E A+ A+++L
Sbjct: 93 LFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKAMEEL 152
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N K+V + P LR +T K NV+ NL + T F +G I
Sbjct: 153 NYTEINGKEVRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG------------- 292
S + D GFV F+D A ++ N F K+ G
Sbjct: 209 LSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 293 KAQKK-------YEREMELKGKFEQSLKETADKFEGLN-----LYVKNLDDSISDDKLKE 340
+ QK E+E L K Q + D L+ +++KNL + D +
Sbjct: 264 ETQKSRLDSETIIEKEQALNDKKVQ--RNDGDSKNNLSSSQNSIFIKNLPTITTRDDILN 321
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FSE G I S + + F+ + + E++ +A+ N K L VA AQ K
Sbjct: 322 FFSEVGPIKSI-YLSTATKVKYLWAFITYKSGEDSERAIKRYNNFYFRGKKLLVARAQDK 380
Query: 401 EER 403
EER
Sbjct: 381 EER 383
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF GQ+V RV D T S GYG+V Y+
Sbjct: 289 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDP 348
Query: 92 HEATRALDELNFTPLNGKPIRIMYS--------YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
A+ A+ +N + G+ + + + + P+ +++ +++ NL S++
Sbjct: 349 RCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDR 407
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-- 200
L F FG + + KVA D + G S+GYGFVQ+ + A A+ LNG L++ +++ V
Sbjct: 408 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 467
Query: 201 --------GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+ T + +N+YV N+ + L ++F FG IT V+
Sbjct: 468 SGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVA 527
Query: 253 DADGKS-KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
D D S K +GF+ F D + A +++ A+NG + V R L S
Sbjct: 528 DPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------RVAGLSPSASIS 579
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371
+T LY+ NL S++ DK+ LF+ FG IT KV+ ++ V ++
Sbjct: 580 AVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYAD 632
Query: 372 AEEASKALTEMNGKMVVSKPLYV 394
A A KA+ M+G MV K L V
Sbjct: 633 APSAIKAVQHMDGYMVEGKRLVV 655
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 179/384 (46%), Gaps = 40/384 (10%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L LS+N +L LF G+V + +V +D +T S GYG+V Y++ H A A+ L
Sbjct: 394 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 453
Query: 102 NFTPLNGKPIRIMYS----------YRDP----TIRKSGAGNIFIKNLDKSIDNKALHDT 147
N ++G+ I + S P T+++ N+++ N+ SID K L +
Sbjct: 454 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVEL 513
Query: 148 FSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-----G 201
F FG I +V D ++GYGF++F + ESA AI +NG L+ + + V
Sbjct: 514 FLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLS 573
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
P ++T D + + +Y+ NL + T D + +F FG IT + + +
Sbjct: 574 PSASISAVQTTQDINK-SRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------Y 625
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
V + D A ++V+ ++G + K V +++ + GK +KE +
Sbjct: 626 SLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGK---PIKE----IDM 678
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
NLYV + S+++D+ +LF FG + ++ R + G V F A+ A+
Sbjct: 679 ANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDH 733
Query: 382 MNGKMVVSKPLYVALAQRKEERRA 405
++G + L V +A E A
Sbjct: 734 LDGYQIGGSILAVRVAGLPAESNA 757
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 36/364 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV ++ S++ +L +LF G++ RV D T + GYG++ + + AT+A+
Sbjct: 494 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 553
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTF 151
+N + G+ I + + P+ S ++I NL +S+ + + F+ F
Sbjct: 554 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 613
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G I + + Y V + + SA A+ ++G ++ K++ V K+
Sbjct: 614 GQITKVLMNLE-------YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV-----KRSELC 661
Query: 212 TADKTR----------FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
T + ++ N+YV + + TED +F FG + + R + +
Sbjct: 662 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRY 716
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G V FD+P AA +++ L+G + V A E Q + +
Sbjct: 717 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM 776
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
NLYV +L +++++L +LF G IT KV+ + G+S+G GFV F+ A A+ ALT
Sbjct: 777 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 836
Query: 381 EMNG 384
MNG
Sbjct: 837 HMNG 840
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELF 342
+FDD++ ++ K Q+ G LKE + NLYV NL S+ KL ELF
Sbjct: 265 QFDDQDKHLHKKQEHTPPSFPQDGG---KLKEV----DNTNLYVGNLPASVGSHKLIELF 317
Query: 343 SEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
FG I +V+ D G+S+G GFV +S AS+A+ MNG++V + L V +A
Sbjct: 318 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVA 373
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A+ + A + + + Q T+LYV L VN+ +L DLF GQ+ +V +
Sbjct: 753 AESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVER 812
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
T S G+G+V + A+ A AL +N PL+G + +
Sbjct: 813 YTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEV 850
>gi|18677184|gb|AAL78224.1|AF345796_1 hypothetical protein Hgg-30 [Heterodera glycines]
Length = 219
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 105/153 (68%), Gaps = 8/153 (5%)
Query: 286 DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345
++++ V +AQKK ER+ ELK ++EQ E +++G+NLYVKNL D+I+D+ L+ F +
Sbjct: 13 EQKFTVCRAQKKSERQAELKRRYEQYKAERIQRYQGVNLYVKNLHDTINDETLRSNFESY 72
Query: 346 GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
G ITS KVM D +G S+G GFV F A+EA+KA+ EMN K++ +KPLYVALAQRKE+R+A
Sbjct: 73 GNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEMNNKIIENKPLYVALAQRKEDRKA 132
Query: 406 RL--QFSQ------MRPPVGPRMPMYPPVAPGL 430
+L Q+ Q M+ P G MY P + G
Sbjct: 133 QLASQYMQRLAAMRMQNPAGLMGTMYAPASGGF 165
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKNL +T ++ L+ F +G ITS VM D G+SK FGFV F+ D+A ++V +
Sbjct: 50 NLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEM 109
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
N K ++K YV AQ+K +R+ +L ++ Q L
Sbjct: 110 NNKIIENKPLYVALAQRKEDRKAQLASQYMQRL 142
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 60/95 (63%)
Query: 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFD 176
Y+ I++ N+++KNL +I+++ L F ++GNI S KV D G+S+G+GFV F+
Sbjct: 38 YKAERIQRYQGVNLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFE 97
Query: 177 NEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
+ A A+ ++N ++ +K ++V RK++R++
Sbjct: 98 KADEATKAVVEMNNKIIENKPLYVALAQRKEDRKA 132
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +L ++ND L F G + S +V D RS G+G+V + A EA
Sbjct: 44 QRYQGVNLYVKNLHDTINDETLRSNFESYGNITSAKVMCD-EHGRSKGFGFVCFEKADEA 102
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
T+A+ E+N + KP+ + + R RK+ + +++ L
Sbjct: 103 TKAVVEMNNKIIENKPLYVALAQRKED-RKAQLASQYMQRL 142
>gi|403164939|ref|XP_003324991.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165464|gb|EFP80572.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 449
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 140/268 (52%), Gaps = 10/268 (3%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQV--VSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
V S++VGDL S+ Q+ +F+Q+ + +S+R R + ++ Y YV Y++A +A+
Sbjct: 171 VDHSVFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAIKKLRAYAYVTYHSAEDAS 230
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+ E N T GKP R++ D ++ + NI++ L S+ A HDTFS FG IL
Sbjct: 231 TAIREFNQTVFEGKPCRVVRVQHD-DLKSNKEANIYVGGLPPSLTGVAFHDTFSEFGEIL 289
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S K+ + S +GF+Q+ E A+ AI K NG L+ K P + E A
Sbjct: 290 SSKLVVNPKNVSNPFGFIQYATAEEAEIAIQKTNGATLDMKDS-TRP-ISTSLFEGQAKP 347
Query: 216 TR---FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
R F+NVY KN+ + T + EFG TST + +DADGK GF NF + +DA
Sbjct: 348 PRQPPFHNVYFKNIPKDITRRCFDQFCEEFGPTTSTFLKKDADGKPMGIGFANFSNTNDA 407
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYER 300
+ VE + +++ + +A + ER
Sbjct: 408 VKIVEYI--RQYAPMGLHAARAYTRGER 433
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 122/279 (43%), Gaps = 25/279 (8%)
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA--- 160
TPLN P + ++ R ++ S +F+ +L SI ++ + FS IL +
Sbjct: 155 TPLNHFPPQ--HASRTTSVDHS----VFVGDLPGSITHEQIVKVFSQVSPILKISIRYPR 208
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
+ ++ + R Y +V + + E A +AI + N + K V +R Q + ++K N
Sbjct: 209 SQAIKKLRAYAYVTYHSAEDASTAIREFNQTVFEGKPCRV---VRVQHDDLKSNKE--AN 263
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV L + T F EFG I S+ ++ + S FGF+ + ++A +++ N
Sbjct: 264 IYVGGLPPSLTGVAFHDTFSEFGEILSSKLVVNPKNVSNPFGFIQYATAEEAEIAIQKTN 323
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G D K+ + +E Q+ F N+Y KN+ I+ +
Sbjct: 324 GATLDMKDSTRPISTSLFE---------GQAKPPRQPPFH--NVYFKNIPKDITRRCFDQ 372
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
EFG TS + +D +G G GF FS +A K +
Sbjct: 373 FCEEFGPTTSTFLKKDADGKPMGIGFANFSNTNDAVKIV 411
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM---RDADGKSKCFGFVNFDDPDDAARS 275
++V+V +L + T + + K+F + I ++ A K + + +V + +DA+ +
Sbjct: 173 HSVFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAIKKLRAYAYVTYHSAEDASTA 232
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
+ N F+ K V + Q +LK E N+YV L S++
Sbjct: 233 IREFNQTVFEGKPCRVVRVQHD-----DLKSNKEA------------NIYVGGLPPSLTG 275
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
+ FSEFG I S K++ +P +S GF+ ++TAEEA A+ + NG
Sbjct: 276 VAFHDTFSEFGEILSSKLVVNPKNVSNPFGFIQYATAEEAEIAIQKTNG 324
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF GQ+V RV D T S GYG+V Y+
Sbjct: 201 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDP 260
Query: 92 HEATRALDELNFTPLNGKPIRIMYS--------YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
A+ A+ +N + G+ + + + + P+ +++ +++ NL S++
Sbjct: 261 RCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDR 319
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-- 200
L F FG + + KVA D + G S+GYGFVQ+ + A A+ LNG L++ +++ V
Sbjct: 320 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 379
Query: 201 --------GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+ T + +N+YV N+ + L ++F FG IT V+
Sbjct: 380 SGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVA 439
Query: 253 DADGKS-KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
D D S K +GF+ F D + A +++ A+NG + V R L S
Sbjct: 440 DPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------RVAGLSPSASIS 491
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371
+T LY+ NL S++ DK+ LF+ FG IT KV+ ++ V ++
Sbjct: 492 AVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYAD 544
Query: 372 AEEASKALTEMNGKMVVSKPLYV 394
A A KA+ M+G MV K L V
Sbjct: 545 APSAIKAVQHMDGYMVEGKRLVV 567
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 179/384 (46%), Gaps = 40/384 (10%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L LS+N +L LF G+V + +V +D +T S GYG+V Y++ H A A+ L
Sbjct: 306 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 365
Query: 102 NFTPLNGKPIRIMYS----------YRDP----TIRKSGAGNIFIKNLDKSIDNKALHDT 147
N ++G+ I + S P T+++ N+++ N+ SID K L +
Sbjct: 366 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVEL 425
Query: 148 FSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-----G 201
F FG I +V D ++GYGF++F + ESA AI +NG L+ + + V
Sbjct: 426 FLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLS 485
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
P ++T D + + +Y+ NL + T D + +F FG IT + + +
Sbjct: 486 PSASISAVQTTQDINK-SRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------Y 537
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
V + D A ++V+ ++G + K V +++ + GK +KE +
Sbjct: 538 SLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGK---PIKE----IDM 590
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
NLYV + S+++D+ +LF FG + ++ R + G V F A+ A+
Sbjct: 591 ANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDH 645
Query: 382 MNGKMVVSKPLYVALAQRKEERRA 405
++G + L V +A E A
Sbjct: 646 LDGYQIGGSILAVRVAGLPAESNA 669
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 36/364 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV ++ S++ +L +LF G++ RV D T + GYG++ + + AT+A+
Sbjct: 406 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 465
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTF 151
+N + G+ I + + P+ S ++I NL +S+ + + F+ F
Sbjct: 466 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 525
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G I + + Y V + + SA A+ ++G ++ K++ V K+
Sbjct: 526 GQITKVLMNLE-------YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV-----KRSELC 573
Query: 212 TADKTR----------FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
T + ++ N+YV + + TED +F FG + + R + +
Sbjct: 574 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRY 628
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G V FD+P AA +++ L+G + V A E Q + +
Sbjct: 629 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM 688
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
NLYV +L +++++L +LF G IT KV+ + G+S+G GFV F+ A A+ ALT
Sbjct: 689 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 748
Query: 381 EMNG 384
MNG
Sbjct: 749 HMNG 752
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELF 342
+FDD++ ++ K Q+ G LKE + NLYV NL S+ KL ELF
Sbjct: 177 QFDDQDKHLHKKQEHTPPSFPQDGG---KLKEV----DNTNLYVGNLPASVGSHKLIELF 229
Query: 343 SEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
FG I +V+ D G+S+G GFV +S AS+A+ MNG++V + L V +A
Sbjct: 230 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVA 285
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A+ + A + + + Q T+LYV L VN+ +L DLF GQ+ +V +
Sbjct: 665 AESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVER 724
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
T S G+G+V + A+ A AL +N PL+G + +
Sbjct: 725 YTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEV 762
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 185/394 (46%), Gaps = 47/394 (11%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF GQ+V RV D T S GYG+V Y+
Sbjct: 288 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDP 347
Query: 92 HEATRALDELNFTPLNGKPIRIMYS--------YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
A+ A+ +N + G+ + + + + P+ +++ +++ NL S++
Sbjct: 348 RCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDR 406
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-- 200
L F FG + + KVA D + G S+GYGFVQ+ + A A+ LNG L++ +++ V
Sbjct: 407 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 466
Query: 201 -------------GPFLRKQERESTADKTR------FNNVYVKNLSETTTEDDLKKIFGE 241
P + + TR +N+YV N+ + L ++F
Sbjct: 467 SGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLP 526
Query: 242 FGIITSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
FG IT V+ D D S K +GF+ F D + A +++ A+NG + V R
Sbjct: 527 FGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------R 578
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
L S +T LY+ NL S++ DK+ LF+ FG IT KV+ +
Sbjct: 579 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----M 631
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ V ++ A A+KA+ M+G MV K L V
Sbjct: 632 NLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 665
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 179/395 (45%), Gaps = 51/395 (12%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L LS+N +L LF G+V + +V +D +T S GYG+V Y++ H A A+ L
Sbjct: 393 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 452
Query: 102 NFTPLNGKPIRIMYS----------YRDPTIRKSGA---------------GNIFIKNLD 136
N ++G+ I + S P+ ++ A N+++ N+
Sbjct: 453 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMP 512
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
SID K L + F FG I +V D ++GYGF++F + ESA AI +NG L+
Sbjct: 513 SSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGG 572
Query: 196 KQVFV-----GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
+ + V P ++T D + + +Y+ NL + T D + +F FG IT +
Sbjct: 573 EMIIVRVAGLSPSASISAVQTTQDINK-SRLYITNLPRSMTADKMVNLFAPFGQITKVLM 631
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ + V + D A ++V+ ++G + K V +++ + GK
Sbjct: 632 NLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGK--- 681
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
+KE + NLYV + S+++D+ +LF FG + ++ R + G V F
Sbjct: 682 PIKE----IDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFD 732
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
A+ A+ ++G + L V +A E A
Sbjct: 733 NPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNA 767
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 36/364 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV ++ S++ +L +LF G++ RV D T + GYG++ + + AT+A+
Sbjct: 504 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 563
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTF 151
+N + G+ I + + P+ S ++I NL +S+ + + F+ F
Sbjct: 564 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 623
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G I + + Y V + + SA A+ ++G ++ K++ V K+
Sbjct: 624 GQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV-----KRSELC 671
Query: 212 TADKTR----------FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
T + ++ N+YV + + TED +F FG + + R + +
Sbjct: 672 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRY 726
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G V FD+P AA +++ L+G + V A E Q + +
Sbjct: 727 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM 786
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
NLYV +L +++++L +LF G IT KV+ + G+S+G GFV F+ A A+ ALT
Sbjct: 787 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 846
Query: 381 EMNG 384
MNG
Sbjct: 847 HMNG 850
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELF 342
+FDD++ ++ K Q+ G LKE + NLYV NL S+ KL ELF
Sbjct: 264 QFDDQDKHLHKKQEHTPPSFPQDGG---KLKEV----DNTNLYVGNLPASVGSHKLIELF 316
Query: 343 SEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
FG I +V+ D G+S+G GFV +S AS+A+ MNG++V + L V +A
Sbjct: 317 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVA 372
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A+ + A + + + Q T+LYV L VN+ +L DLF GQ+ +V +
Sbjct: 763 AESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVER 822
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
T S G+G+V + A+ A AL +N PL+G + +
Sbjct: 823 YTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEV 860
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 185/394 (46%), Gaps = 47/394 (11%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF GQ+V RV D T S GYG+V Y+
Sbjct: 285 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDP 344
Query: 92 HEATRALDELNFTPLNGKPIRIMYS--------YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
A+ A+ +N + G +++ + + P+ +++ +++ NL S++
Sbjct: 345 RCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDR 403
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-- 200
L F FG + + KVA D + G S+GYGFVQ+ + A A+ LNG L++ +++ V
Sbjct: 404 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 463
Query: 201 -------------GPFLRKQERESTADKTR------FNNVYVKNLSETTTEDDLKKIFGE 241
P + + TR +N+YV N+ + L ++F
Sbjct: 464 SGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLP 523
Query: 242 FGIITSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
FG IT V+ D D S K +GF+ F D + A +++ A+NG + V R
Sbjct: 524 FGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------R 575
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
L S +T LY+ NL S++ DK+ LF+ FG IT KV+ +
Sbjct: 576 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----M 628
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ V ++ A A+KA+ M+G MV K L V
Sbjct: 629 NLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 662
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 179/395 (45%), Gaps = 51/395 (12%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L LS+N +L LF G+V + +V +D +T S GYG+V Y++ H A A+ L
Sbjct: 390 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 449
Query: 102 NFTPLNGKPIRIMYS----------YRDPTIRKSGA---------------GNIFIKNLD 136
N ++G+ I + S P+ ++ A N+++ N+
Sbjct: 450 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMP 509
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
SID K L + F FG I +V D ++GYGF++F + ESA AI +NG L+
Sbjct: 510 SSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGG 569
Query: 196 KQVFV-----GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
+ + V P ++T D + + +Y+ NL + T D + +F FG IT +
Sbjct: 570 EMIIVRVAGLSPSASISAVQTTQDINK-SRLYITNLPRSMTADKMVNLFAPFGQITKVLM 628
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ + V + D A ++V+ ++G + K V +++ + GK
Sbjct: 629 NLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGK--- 678
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
+KE + NLYV + S+++D+ +LF FG + ++ R + G V F
Sbjct: 679 PIKE----IDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFD 729
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
A+ A+ ++G + L V +A E A
Sbjct: 730 NPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNA 764
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 36/364 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV ++ S++ +L +LF G++ RV D T + GYG++ + + AT+A+
Sbjct: 501 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 560
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTF 151
+N + G+ I + + P+ S ++I NL +S+ + + F+ F
Sbjct: 561 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 620
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G I + + Y V + + SA A+ ++G ++ K++ V K+
Sbjct: 621 GQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV-----KRSELC 668
Query: 212 TADKTR----------FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
T + ++ N+YV + + TED +F FG + + R + +
Sbjct: 669 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRY 723
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G V FD+P AA +++ L+G + V A E Q + +
Sbjct: 724 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM 783
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
NLYV +L +++++L +LF G IT KV+ + G+S+G GFV F+ A A+ ALT
Sbjct: 784 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 843
Query: 381 EMNG 384
MNG
Sbjct: 844 HMNG 847
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A+ + A + + + Q T+LYV L VN+ +L DLF GQ+ +V +
Sbjct: 760 AESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVER 819
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
T S G+G+V + A+ A AL +N PL+G + +
Sbjct: 820 YTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEV 857
>gi|320581163|gb|EFW95384.1| poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 716
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 171/350 (48%), Gaps = 54/350 (15%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSL+VGDLD S+++ L ++FN+ ++SV++ D T SLGYGYVNY+ +A A++
Sbjct: 180 TSLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNEDQANFAME 239
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN+T + IRIM S RD + R+ N+F+ NL + + L+D F GN+LSCK
Sbjct: 240 SLNYTTIGSSEIRIMPSLRDKSQRERIGANVFLSNLSSHLTTRQLYDRFRKHGNVLSCKY 299
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE---STA--- 213
+ S+ F+ F+++E A + N L+ + V+VG + K++RE +TA
Sbjct: 300 DS-----SKQQAFIHFESKEVAYEVVKTYNHTTLDGRLVYVGLHILKKDRELFGATASAS 354
Query: 214 --------------------------DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
D + +++V+NL E +K + +G + S
Sbjct: 355 SKLTEKRDISQIPTFSPTFQNTKHKNDISTHYSIFVRNLPLNIEEHVIKSLVEPYGPVLS 414
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA----QKKYEREME 303
+ R K+ C+ V + + ++V LN + + ++ +V +A +K Y R+ E
Sbjct: 415 -VLARKVPKKNGCWALVTLSNQESVDKAVSHLNMVEINKQQLFVTRAIPKEEKSYSRKQE 473
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
++ K++ L + + L+ + DK + FG+I S ++
Sbjct: 474 VQPKYK------------LKILITGLNVNTHKDKFQNWCLTFGSIKSVEL 511
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 133/299 (44%), Gaps = 37/299 (12%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDK 187
++F+ +LDKS+ L + F+ + +LS K+ D G S GYG+V + NE+ A A++
Sbjct: 181 SLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNEDQANFAMES 240
Query: 188 LNGMLLNDKQVFVGPFLR-KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN + ++ + P LR K +RE NV++ NLS T L F + G +
Sbjct: 241 LNYTTIGSSEIRIMPSLRDKSQRERIG-----ANVFLSNLSSHLTTRQLYDRFRKHGNVL 295
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM---- 302
S SK F++F+ + A V+ N D + YVG K +RE+
Sbjct: 296 SCKY-----DSSKQQAFIHFESKEVAYEVVKTYNHTTLDGRLVYVGLHILKKDRELFGAT 350
Query: 303 -----ELKGKFE-----------QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
+L K + Q+ K D +++V+NL +I + +K L +G
Sbjct: 351 ASASSKLTEKRDISQIPTFSPTFQNTKHKNDISTHYSIFVRNLPLNIEEHVIKSLVEPYG 410
Query: 347 TITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ S + P NG V S E KA++ +N + + L+V A KEE+
Sbjct: 411 PVLSVLARKVPKKNGC---WALVTLSNQESVDKAVSHLNMVEINKQQLFVTRAIPKEEK 466
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 185/394 (46%), Gaps = 47/394 (11%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF GQ+V RV D T S GYG+V Y+
Sbjct: 201 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDP 260
Query: 92 HEATRALDELNFTPLNGKPIRIMYS--------YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
A+ A+ +N + G +++ + + P+ +++ +++ NL S++
Sbjct: 261 RCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDR 319
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-- 200
L F FG + + KVA D + G S+GYGFVQ+ + A A+ LNG L++ +++ V
Sbjct: 320 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 379
Query: 201 -------------GPFLRKQERESTADKTR------FNNVYVKNLSETTTEDDLKKIFGE 241
P + + TR +N+YV N+ + L ++F
Sbjct: 380 SGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLP 439
Query: 242 FGIITSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
FG IT V+ D D S K +GF+ F D + A +++ A+NG + V R
Sbjct: 440 FGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------R 491
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
L S +T LY+ NL S++ DK+ LF+ FG IT KV+ +
Sbjct: 492 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----M 544
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ V ++ A A+KA+ M+G MV K L V
Sbjct: 545 NLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 578
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 179/395 (45%), Gaps = 51/395 (12%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L LS+N +L LF G+V + +V +D +T S GYG+V Y++ H A A+ L
Sbjct: 306 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 365
Query: 102 NFTPLNGKPIRIMYS----------YRDPTIRKSGA---------------GNIFIKNLD 136
N ++G+ I + S P+ ++ A N+++ N+
Sbjct: 366 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMP 425
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
SID K L + F FG I +V D ++GYGF++F + ESA AI +NG L+
Sbjct: 426 SSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGG 485
Query: 196 KQVFV-----GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
+ + V P ++T D + + +Y+ NL + T D + +F FG IT +
Sbjct: 486 EMIIVRVAGLSPSASISAVQTTQDINK-SRLYITNLPRSMTADKMVNLFAPFGQITKVLM 544
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ + V + D A ++V+ ++G + K V +++ + GK
Sbjct: 545 NLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGK--- 594
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
+KE + NLYV + S+++D+ +LF FG + ++ R + G V F
Sbjct: 595 PIKE----IDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFD 645
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
A+ A+ ++G + L V +A E A
Sbjct: 646 NPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNA 680
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 36/364 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV ++ S++ +L +LF G++ RV D T + GYG++ + + AT+A+
Sbjct: 417 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 476
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTF 151
+N + G+ I + + P+ S ++I NL +S+ + + F+ F
Sbjct: 477 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 536
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G I + + Y V + + SA A+ ++G ++ K++ V K+
Sbjct: 537 GQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV-----KRSELC 584
Query: 212 TADKTR----------FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
T + ++ N+YV + + TED +F FG + + R + +
Sbjct: 585 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRY 639
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G V FD+P AA +++ L+G + V A E Q + +
Sbjct: 640 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM 699
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
NLYV +L +++++L +LF G IT KV+ + G+S+G GFV F+ A A+ ALT
Sbjct: 700 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 759
Query: 381 EMNG 384
MNG
Sbjct: 760 HMNG 763
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A+ + A + + + Q T+LYV L VN+ +L DLF GQ+ +V +
Sbjct: 676 AESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVER 735
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
T S G+G+V + A+ A AL +N PL+G + +
Sbjct: 736 YTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEV 773
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 87/108 (80%), Gaps = 1/108 (0%)
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
R+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G
Sbjct: 1 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GG 59
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL 407
S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L
Sbjct: 60 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 107
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 205 RKQERESTADKTRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
RK E+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 7 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 65
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 66 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 115
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 24 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 82
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER++ N Y++ ++
Sbjct: 83 NGRIVATKPLYVALAQRKEERQA-----HLTNQYMQRMA 116
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 19 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 76
Query: 96 RALDELNFTPLNGKPIRIMYSYRD 119
+A+ E+N + KP+ + + R
Sbjct: 77 KAVTEMNGRIVATKPLYVALAQRK 100
>gi|168018575|ref|XP_001761821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686876|gb|EDQ73262.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 153
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 110/155 (70%), Gaps = 11/155 (7%)
Query: 501 MLPRG--RIYRYPPGC-NIPDV--PVAGVPGGMLPGPYDIGGMPFRDA---AFSQPMQTG 552
M+ RG R +RY P N PDV P G+ MLP P +IGG P + QP+
Sbjct: 1 MIQRGGNRNFRYIPNARNTPDVSVPPQGIINTMLPVPLEIGGAPAANVDPGVPQQPLPIS 60
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
ALASALA+A P+QQR +LGE LYPLVDQLEHD A KVTGMLLEMDQTEVLHL+ESP+ALK
Sbjct: 61 ALASALASAPPDQQRAMLGEQLYPLVDQLEHDFAGKVTGMLLEMDQTEVLHLIESPDALK 120
Query: 613 AKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDN 647
AKVAEAMEVLR QA +PTD++ +LS++D+
Sbjct: 121 AKVAEAMEVLR---MAQAVPSAPTDQLGNLSISDS 152
>gi|410730871|ref|XP_003980256.1| hypothetical protein NDAI_0G05970 [Naumovozyma dairenensis CBS 421]
gi|401780433|emb|CCK73580.1| hypothetical protein NDAI_0G05970 [Naumovozyma dairenensis CBS 421]
Length = 611
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 177/387 (45%), Gaps = 60/387 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+T LY+G L V + L++ F + S+++CRD T SLGYGY+N++ + EAT+ +
Sbjct: 100 TTPLYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATKLI 159
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNIL 155
D+ N+T L G I+IM S R+ RK+ N+F NL +K + + +DTF +G IL
Sbjct: 160 DDYNYTNLFGNEIKIMPSMRNTLYRKNIGTNVFFSNLPLENKQLTTRKFYDTFKKYGEIL 219
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ-------- 207
SCK L + GFV F+N+++A AI N + ++ G K+
Sbjct: 220 SCK-----LDSRKNIGFVYFENDKAALQAIKDYNNKVFFGNKIICGIHFDKEIRTFPDFD 274
Query: 208 --------------ERESTADKTRF-----------NNVYVKNLSETTTEDDLKKIFGEF 242
E E+ + +F N V++KNL TT +D++ F +
Sbjct: 275 KRKSYLDSQLIIEDELEAGGEFLKFKQEPKCIVPHPNAVFIKNLPMTTNDDEILDFFSKI 334
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G + S + S + FV + D +++ L+ F D+ V KA+ K
Sbjct: 335 GPVKSVFASQVLKYNS-LWAFVTYKKSSDTELAIQKLDQTYFKDRAISVTKAKSK----- 388
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG--I 360
K F+ K+T +Y+KNL I +++ E I K+ DP I
Sbjct: 389 --KTNFKIHDKKT--------VYLKNL-SPICNERFIERICLQERIRVQKISVDPISPDI 437
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMV 387
+GFV T +A+K M+ +++
Sbjct: 438 LTNTGFVTCKTEVDANKLFNFMDKRLI 464
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 149/343 (43%), Gaps = 51/343 (14%)
Query: 98 LDELNFTPLNGK-PIRIMYSYRDPTIR----KSGAGNI-------FIKNLDKSIDNKALH 145
L+E+ F +GK P+ Y +D + K A NI +I L K + + L
Sbjct: 59 LEEIAFVKKDGKLPLHNSYDTKDEKQKFATTKKLAENIKPKTTPLYIGGLSKDVTEETLF 118
Query: 146 DTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
+ F + + S K+ DS+ +S GYG++ F N A ID N L ++ + P +
Sbjct: 119 EAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATKLIDDYNYTNLFGNEIKIMPSM 178
Query: 205 RKQ-ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
R R++ F+N+ ++N TT + F ++G I S + K GF
Sbjct: 179 RNTLYRKNIGTNVFFSNLPLENKQLTTRK--FYDTFKKYGEILSCKL-----DSRKNIGF 231
Query: 264 VNFDDPDDAARSVEALNGK---------------------KFDDKEWYVGKAQKKYEREM 302
V F++ A ++++ N K FD ++ Y+ +Q E E+
Sbjct: 232 VYFENDKAALQAIKDYNNKVFFGNKIICGIHFDKEIRTFPDFDKRKSYLD-SQLIIEDEL 290
Query: 303 ELKGKFEQSLKETADKFEGLN-LYVKNLDDSISDDKLKELFSEFGTITSC---KVMRDPN 358
E G+F + +E N +++KNL + +DD++ + FS+ G + S +V++
Sbjct: 291 EAGGEFLKFKQEPKCIVPHPNAVFIKNLPMTTNDDEILDFFSKIGPVKSVFASQVLK--- 347
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
+ FV + + + A+ +++ + + V A+ K+
Sbjct: 348 -YNSLWAFVTYKKSSDTELAIQKLDQTYFKDRAISVTKAKSKK 389
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 27/239 (11%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+Y+ LS+ TE+ L + F ++ + S + RD+ +S +G++NF + +A + ++
Sbjct: 103 LYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATKLIDDY 162
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL---DDSISDD 336
N + E+++ +L K G N++ NL + ++
Sbjct: 163 NYTNL-------------FGNEIKIMPSMRNTLYR---KNIGTNVFFSNLPLENKQLTTR 206
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
K + F ++G I SCK+ N GFV F + A +A+ + N K+ + +
Sbjct: 207 KFYDTFKKYGEILSCKLDSRKN-----IGFVYFENDKAALQAIKDYNNKVFFGNKIICGI 261
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
K E R F + + + ++ + + G G+ L + Q P I P P + + L
Sbjct: 262 HFDK-EIRTFPDFDKRKSYLDSQLIIEDELEAG-GEFLKFKQEPKCIVPHPNAVFIKNL 318
>gi|14571727|emb|CAC42820.1| Poly(A)-binding protein cytoplasmic 5 [Mus musculus]
Length = 119
Score = 139 bits (350), Expect = 4e-30, Method: Composition-based stats.
Identities = 68/120 (56%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
LGYGYVN+ +A AL+ +NF +NGKP R+M+S D +RKSG GNIFIKNLDK+ID
Sbjct: 1 LGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTID 60
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
N+AL FS FGNILSCKV D G S+GY +V FD+ +A AI +NG+ LN++QV+V
Sbjct: 61 NRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHVNGVRLNNRQVYV 119
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 17/134 (12%)
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
+G+VNF P DA ++ +N + K + + +Q + L+++
Sbjct: 3 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQP------------DDRLRKSGVG-- 48
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
N+++KNLD +I + L LFS FG I SCKV+ D NG S+G +V F + A++A+
Sbjct: 49 --NIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIW 105
Query: 381 EMNGKMVVSKPLYV 394
+NG + ++ +YV
Sbjct: 106 HVNGVRLNNRQVYV 119
Score = 61.6 bits (148), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 169 GYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLS 227
GYG+V F A+ A++ +N L+N K PF L + + K+ N+++KNL
Sbjct: 2 GYGYVNFRFPADAEWALNTMNFDLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLD 56
Query: 228 ETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
+T L +F FG I S V+ D +G SK + +V+FD A R++ +NG + +++
Sbjct: 57 KTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHVNGVRLNNR 115
Query: 288 EWYV 291
+ YV
Sbjct: 116 QVYV 119
Score = 42.0 bits (97), Expect = 1.00, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD ++++ L+ LF+ G ++S + VC D ++ GY YV++++ A RA+
Sbjct: 49 NIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIW 105
Query: 100 ELNFTPLNGKPIRI 113
+N LN + + +
Sbjct: 106 HVNGVRLNNRQVYV 119
>gi|262192741|gb|ACY30440.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 99
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/99 (74%), Positives = 81/99 (81%), Gaps = 7/99 (7%)
Query: 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR 413
DP+G+S+GSGFVAFST EEAS+AL+EMNGKMVVSKPLYVALAQRKEERRARL QFSQMR
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 60
Query: 414 P-----PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQP 447
P V PRMPMYPP GLGQQ+FYGQ P + P P
Sbjct: 61 PIAMASSVAPRMPMYPPGGHGLGQQIFYGQPQPAMLPPP 99
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
D G SK GFV F P++A+R++ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 58
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
D G S+G GFV F E A A+ ++NG ++ K ++V RK+ER +
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRA 50
>gi|260656096|pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 139 bits (350), Expect = 5e-30, Method: Composition-based stats.
Identities = 65/93 (69%), Positives = 80/93 (86%), Gaps = 1/93 (1%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +
Sbjct: 3 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 61
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 62 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 94
Score = 75.9 bits (185), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+++KNLD SI + L + FS FG I SCKV+ D NG S+G GFV F T E A +A+ +M
Sbjct: 13 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 71
Query: 383 NGKMVVSKPLYVALAQRKEERRA 405
NG ++ + ++V + ++ER A
Sbjct: 72 NGMLLNDRKVFVGRFKSRKEREA 94
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
K+ N+++KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R
Sbjct: 8 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 66
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREME 303
++E +NG +D++ +VG+ + + ERE E
Sbjct: 67 AIEKMNGMLLNDRKVFVGRFKSRKEREAE 95
Score = 47.4 bits (111), Expect = 0.026, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 15 AAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
A PS +G+ N +++ +LD S+++ LYD F+ G ++S +V D
Sbjct: 1 GADPSLRKSGVGN--------------IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 46
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111
S GYG+V++ A RA++++N LN + +
Sbjct: 47 --ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 81
>gi|302142289|emb|CBI19492.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 77/87 (88%)
Query: 548 PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLES 607
PM LASALANA+P+QQRT+L E+LYPLVDQLEH+ AAK+TGMLLEM QTE LHLLES
Sbjct: 53 PMPISTLASALANATPDQQRTMLSESLYPLVDQLEHEMAAKLTGMLLEMGQTEFLHLLES 112
Query: 608 PEALKAKVAEAMEVLRNVAQQQATGPS 634
PEALK+KVAEAM+VLRNVAQQQA P+
Sbjct: 113 PEALKSKVAEAMDVLRNVAQQQANSPT 139
>gi|324525699|gb|ADY48582.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 121
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 80/102 (78%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+ +A RALD
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 79
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNK 142
+NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNK
Sbjct: 80 MNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNK 121
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAID 186
++++ +L + L + FS+ G +LS +V D++ +S GY +V F A+ A+D
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
+N ++ K + + +R+ + ++ N+++KNL ++
Sbjct: 79 TMNFDVMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKS 117
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTAEEASKAL 379
+LYV +L +++ L E FS G + S +V RD I+R G +V F +A +AL
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRD--AITRRSLGYAYVNFQQPADAERAL 77
Query: 380 TEMNGKMVVSKPLYVALAQRKEERR 404
MN ++ KP+ + +QR R
Sbjct: 78 DTMNFDVMYGKPIRIMWSQRDPSMR 102
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RDA +S + +VNF P DA R+++
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 79
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
+N K + +Q+ + S++ + N+++KNLD SI +
Sbjct: 80 MNFDVMYGKPIRIMWSQR------------DPSMRRSG----AGNIFIKNLDKSIDN 120
>gi|363750089|ref|XP_003645262.1| hypothetical protein Ecym_2746 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888895|gb|AET38445.1| Hypothetical protein Ecym_2746 [Eremothecium cymbalariae
DBVPG#7215]
Length = 681
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/456 (25%), Positives = 202/456 (44%), Gaps = 77/456 (16%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++GDLD V + L D FN+ VS ++C D +T++SLGYGY+N++ +A R ++E
Sbjct: 121 ALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLGYGYLNFSNEEDAERVIEE 180
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSC 157
N+ P+ G+ +RIM S R+ RK+ N+F NL + ++ + +D F +G ILSC
Sbjct: 181 FNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLALTTRVFYDAFKKYGKILSC 240
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TAD 214
K L + + GFV F+ + SAK AI + NG + G + R+S
Sbjct: 241 K-----LDRRKNIGFVYFEKDSSAKQAIAEYNGKQFYGNNILCGIHFDRNVRKSPEFEKR 295
Query: 215 KTRF-----------------------------NNVYVKNLSETTTEDDLKKIFGEFGII 245
K R N V++KNL + D L F + G +
Sbjct: 296 KARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIKNLPLNSDSDLLLDYFSQIGPV 355
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL- 304
S + + + F+ F DA ++++LN + + + +AQK ++ +++
Sbjct: 356 KSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDSLNHSQLLGRTIELSRAQKNFQSDIDAA 414
Query: 305 ---KGKFEQSLKETADKFEG----------LNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G S+K +AD EG L +Y+ +L SI ++ + F I +
Sbjct: 415 NAGTGNTGGSIK-SADS-EGSSSQHNSSYKLTVYLSSL-SSICSEQFLQCFCAEERIKTK 471
Query: 352 KV---MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-------------VSKPLYVA 395
++ D + ++ SGFV T +A++ +N K++ +KP+ A
Sbjct: 472 RISIRFYDEDTLT-FSGFVQCQTRNDANRLFELLNDKLLGDSTVKASWKPSKEAKPINTA 530
Query: 396 LAQRKEERRARLQFSQMRP--PVGPRMPMYPPVAPG 429
+ +LQ S + PV R Y AP
Sbjct: 531 VTTVPTASHLKLQQSHKKATTPVNIRREPYIYRAPA 566
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 147/314 (46%), Gaps = 36/314 (11%)
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRG 169
+++ S PT+ +FI +LD+ + K L DTF+ F + +S K+ DS +S G
Sbjct: 103 VKLGRSKDSPTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLG 162
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ-ERESTADKTRFNNVYVKNLSE 228
YG++ F NEE A+ I++ N + + ++V + P LR R++ F+N+ ++NL+
Sbjct: 163 YGYLNFSNEEDAERVIEEFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLAL 222
Query: 229 TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
TT F ++G I S + R K GFV F+ A +++ NGK+F
Sbjct: 223 TTRV--FYDAFKKYGKILSCKLDR-----RKNIGFVYFEKDSSAKQAIAEYNGKQFYGNN 275
Query: 289 WYVGKAQKKYEREMELKGKFEQS---------LKET-----------ADKFEGLN---LY 325
G ++R + +FE+ +KE+ K +G + ++
Sbjct: 276 ILCGI---HFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVF 332
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNL + D L + FS+ G + S + + ++ F+ F +A A+ +N
Sbjct: 333 IKNLPLNSDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDSLNHS 391
Query: 386 MVVSKPLYVALAQR 399
++ + + ++ AQ+
Sbjct: 392 QLLGRTIELSRAQK 405
>gi|400260942|pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
gi|400260943|pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 137 bits (344), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/108 (62%), Positives = 84/108 (77%), Gaps = 3/108 (2%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G+GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI
Sbjct: 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAI 62
Query: 186 DKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTT 231
+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN +T
Sbjct: 63 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGST 110
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+++KNLD SI + L + FS FG I SCKV+ D NG S+G GFV F T E A +A+ +M
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 65
Query: 383 NGKMVVSKPLYVALAQRKEERRARL 407
NG ++ + ++V + ++ER A L
Sbjct: 66 NGMLLNDRKVFVGRFKSRKEREAEL 90
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 11/110 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+++KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 65
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
NG +D++ +VG+ + + ERE EL + + E N+Y+KN
Sbjct: 66 NGMLLNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNF 105
Score = 48.9 bits (115), Expect = 0.008, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S ++++ +LD S+++ LYD F+ G ++S +V D S GYG+V++ A RA+
Sbjct: 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAI 62
Query: 99 DELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNL 135
+++N LN + + + + R + GA N++IKN
Sbjct: 63 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNF 105
>gi|50302861|ref|XP_451368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640499|emb|CAH02956.1| KLLA0A08338p [Kluyveromyces lactis]
Length = 766
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 175/382 (45%), Gaps = 46/382 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L++GDL +V + L+++FN+ SV++C D +T++SLGYGY+N+ +A A+D
Sbjct: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILS 156
E N+ P+ G+ IR+M S R+ RK+ N+F NL + + + +D F FG ILS
Sbjct: 198 EYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILS 257
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK L + + GF+ F+N+ +AK AI + NG D + G + R+S +
Sbjct: 258 CK-----LDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQ 312
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N + NL+ ++ M D + V D ++ + V
Sbjct: 313 KINR--INNLT----------------VVKEKLEMEDDNN-------VTTDPSENGKKDV 347
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
A N DD + VG A K E + K + A ++VKNL + S D
Sbjct: 348 VAGNDTDDDDDDKAVGNATKSLVEETNKESKNTKLPHPNA-------IFVKNLPINPSHD 400
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L FS+ G + S D + F+ + ++ A+ ++NG + + + V
Sbjct: 401 NLLNFFSKIGPVKSV-YTSDVSKFDSSWAFITYKRIQDTKTAIEKLNGCKYMKRTIEV-- 457
Query: 397 AQRKEERRARLQFSQMRPPVGP 418
K+ R L+ SQ P
Sbjct: 458 ---KKTERHHLEESQFENNTRP 476
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 16/196 (8%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEE 179
T++ +FI +L ++ LH+ F+ F + S K+ DS +S GYG++ F + +
Sbjct: 131 TMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPK 190
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQE-RESTADKTRFNNVYVKNLSETTT--EDDLK 236
A++A+D+ N M + +++ + P LR R++ F+N+ + N TT D+ K
Sbjct: 191 DAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFK 250
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
K FG I S + R K GF+ F++ A +++ NGK+F D G
Sbjct: 251 K----FGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCG---V 298
Query: 297 KYEREMELKGKFEQSL 312
++R + +FEQ +
Sbjct: 299 HFDRNVRKSPEFEQKI 314
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IF+KNL + + L + FS G + S + S S + F+ + + K+AI+KLN
Sbjct: 388 IFVKNLPINPSHDNLLNFFSKIGPVKSVYTSDVSKFDS-SWAFITYKRIQDTKTAIEKLN 446
Query: 190 GMLLNDKQVFVGPFLRKQEREST-ADKTRFNN----VYVKNLSETTTEDDLKKIFGEFGI 244
G + + V R ES + TR NN V++ NLS E+ L + G+ I
Sbjct: 447 GCKYMKRTIEVKKTERHHLEESQFENNTRPNNYKKTVFLTNLSVICNEEFLNFLCGQERI 506
Query: 245 ITSTAVMRDADGKSKCF-GFVNFDDPDDAARSVEALNGKKFDDKE 288
T V+R + K+ + G+V +DA R E + K D E
Sbjct: 507 KTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFELMENKLLGDSE 551
>gi|367013040|ref|XP_003681020.1| hypothetical protein TDEL_0D02250 [Torulaspora delbrueckii]
gi|359748680|emb|CCE91809.1| hypothetical protein TDEL_0D02250 [Torulaspora delbrueckii]
Length = 622
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 142/292 (48%), Gaps = 43/292 (14%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+L++GDL+ SV ++ L D+F + + SV++C D ++ +SLGYGY+N+ + +A +A +
Sbjct: 97 VALFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYLNFANSEDAEKATE 156
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILS 156
E N+ P+ G+ +RIM S R+ RK+ N+F NL D + + +DTF +G ILS
Sbjct: 157 EFNYRPIEGQEVRIMPSLRNSFYRKNVGTNVFFSNLPLEDSRLTTRVFYDTFKKYGKILS 216
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE------ 210
CK L + + GF+ F+N++SA+ I NG +V G K R+
Sbjct: 217 CK-----LDKRKDIGFIYFNNDQSARKVIKDYNGKEFFGNKVLCGIHFDKDFRKYPEFEK 271
Query: 211 ---------------STADKTRF-------------NNVYVKNLSETTTEDDLKKIFGEF 242
+T D + N V+VKNL T +++ F
Sbjct: 272 RISNLDSITVAMEELTTEDSNKVVLQRDSGSQVPHPNAVFVKNLPMDCTNEEILDFFSNI 331
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294
G + S + A + + FV + D ++S++ N K+F ++ V KA
Sbjct: 332 GPVKSVFSSK-APKFNSLWAFVTYKRGSDTSKSIQFYNDKEFKNRRLIVSKA 382
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 32/305 (10%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEE 179
T+ +FI +L+ S+ L D F F ++ S K+ DS G+S GYG++ F N E
Sbjct: 90 TLESKSVVALFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYLNFANSE 149
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQ-ERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
A+ A ++ N + ++V + P LR R++ F+N+ +++ TT
Sbjct: 150 DAEKATEEFNYRPIEGQEVRIMPSLRNSFYRKNVGTNVFFSNLPLEDSRLTTRV--FYDT 207
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG-KAQKK 297
F ++G I S + K K GF+ F++ A + ++ NGK+F + G K
Sbjct: 208 FKKYGKILSCKL-----DKRKDIGFIYFNNDQSARKVIKDYNGKEFFGNKVLCGIHFDKD 262
Query: 298 YEREMELKGKF---------------EQSLKETADKFEGLN------LYVKNLDDSISDD 336
+ + E + + E S K + G ++VKNL +++
Sbjct: 263 FRKYPEFEKRISNLDSITVAMEELTTEDSNKVVLQRDSGSQVPHPNAVFVKNLPMDCTNE 322
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
++ + FS G + S + P S + FV + + SK++ N K ++ L V+
Sbjct: 323 EILDFFSNIGPVKSVFSSKAPKFNSLWA-FVTYKRGSDTSKSIQFYNDKEFKNRRLIVSK 381
Query: 397 AQRKE 401
A KE
Sbjct: 382 AVPKE 386
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 96/203 (47%), Gaps = 25/203 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFV 264
K + ST + +++ +L + TE+ L+ IFG+F +TS + D++ GKS +G++
Sbjct: 84 KSKLSSTLESKSVVALFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYL 143
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
NF + +DA ++ E N + + +E + + L+ F + K G N+
Sbjct: 144 NFANSEDAEKATEEFNYRPIEGQEVRIMPS---------LRNSFYR-------KNVGTNV 187
Query: 325 YVKNL---DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
+ NL D ++ + F ++G I SCK+ + + GF+ F+ + A K + +
Sbjct: 188 FFSNLPLEDSRLTTRVFYDTFKKYGKILSCKLDK-----RKDIGFIYFNNDQSARKVIKD 242
Query: 382 MNGKMVVSKPLYVALAQRKEERR 404
NGK + + K+ R+
Sbjct: 243 YNGKEFFGNKVLCGIHFDKDFRK 265
>gi|255720292|ref|XP_002556426.1| KLTH0H12958p [Lachancea thermotolerans]
gi|238942392|emb|CAR30564.1| KLTH0H12958p [Lachancea thermotolerans CBS 6340]
Length = 639
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 142/293 (48%), Gaps = 42/293 (14%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SL++GDLD V + L F+ + SV++C D T++SLGYGY+N+ +A EA A++
Sbjct: 94 SSLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAIE 153
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILS 156
+ ++ L GK +RIM S R+ RK+ N+F NL + ++ + +++F +G +LS
Sbjct: 154 KFSYVKLFGKEVRIMPSMRNSYFRKNIGTNVFFTNLPLENPALTTRVFYESFRKYGRVLS 213
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM----------LLNDKQVFVGPFLRK 206
CK L + + GFV F+++ SAK AID N L DK + P K
Sbjct: 214 CK-----LDRRKNIGFVYFESDISAKKAIDDFNSREYFGNKIACGLHFDKDIRKSPQFEK 268
Query: 207 Q--------------ERESTADKTRF---------NNVYVKNLSETTTEDDLKKIFGEFG 243
+ E E+ D +V+VKNL +DL F + G
Sbjct: 269 RRSKLEGLTVIKESLESEACTDSNSLGDSPGPTPSTSVHVKNLPIGVCNEDLLNYFSKVG 328
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
I S + AD + +GF+ + D R++E LNG F K V +A K
Sbjct: 329 PIKSVYTSK-ADVYTTSWGFITYKRSRDTIRALEELNGAIFMGKRVEVTRAVK 380
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 31/292 (10%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDK 187
++FI +LDK + K L FS F + S K+ DS +S GYG++ F + + A AI+K
Sbjct: 95 SLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAIEK 154
Query: 188 LNGMLLNDKQVFVGPFLRKQE-RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+ + L K+V + P +R R++ F N+ ++N + TT + F ++G +
Sbjct: 155 FSYVKLFGKEVRIMPSMRNSYFRKNIGTNVFFTNLPLENPALTTRV--FYESFRKYGRVL 212
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG-------------- 292
S + R K GFV F+ A ++++ N +++ + G
Sbjct: 213 SCKLDR-----RKNIGFVYFESDISAKKAIDDFNSREYFGNKIACGLHFDKDIRKSPQFE 267
Query: 293 KAQKKYEREMELKGKFE-------QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345
K + K E +K E SL ++ +++VKNL + ++ L FS+
Sbjct: 268 KRRSKLEGLTVIKESLESEACTDSNSLGDSPGPTPSTSVHVKNLPIGVCNEDLLNYFSKV 327
Query: 346 GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
G I S + + + GF+ + + + +AL E+NG + + K + V A
Sbjct: 328 GPIKSVYTSK-ADVYTTSWGFITYKRSRDTIRALEELNGAIFMGKRVEVTRA 378
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSV 276
+++++ +L + TE L F F + S + D++ K S +G++NF +A ++
Sbjct: 93 ISSLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAI 152
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL---DDSI 333
E + K KE + + + F +++ G N++ NL + ++
Sbjct: 153 EKFSYVKLFGKEVRIMPSMRN--------SYFRKNI--------GTNVFFTNLPLENPAL 196
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+ E F ++G + SCK+ R N GFV F + A KA+ + N + +
Sbjct: 197 TTRVFYESFRKYGRVLSCKLDRRKN-----IGFVYFESDISAKKAIDDFNSREYFGNKIA 251
Query: 394 VALAQRKEERRARLQFSQMRPPV 416
L K+ R++ QF + R +
Sbjct: 252 CGLHFDKDIRKSP-QFEKRRSKL 273
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNYNAAHEATRA 97
STS++V +L + V + L + F+++G + SV + D+ T +G++ Y + + RA
Sbjct: 303 STSVHVKNLPIGVCNEDLLNYFSKVGPIKSVYTSKADVYT---TSWGFITYKRSRDTIRA 359
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
L+ELN GK + + + + RKS + N
Sbjct: 360 LEELNGAIFMGKRVEVTRAVKYNGERKSTSTN 391
>gi|298712686|emb|CBJ48711.1| polyadenylate-binding protein, putative [Ectocarpus siliculosus]
Length = 80
Score = 134 bits (338), Expect = 1e-28, Method: Composition-based stats.
Identities = 63/79 (79%), Positives = 71/79 (89%)
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
MRD DGKSKCFGFVNF++ DDAA++VEALNGKK DDKEWYVGKAQKK ERE ELK +FEQ
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
Query: 311 SLKETADKFEGLNLYVKNL 329
S+KETADK++G NLYVKN
Sbjct: 61 SMKETADKYQGANLYVKNF 79
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 12/77 (15%)
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---------- 211
D G+S+ +GFV F+N + A A++ LNG ++DK+ +VG +K ERE+
Sbjct: 3 DMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQSM 62
Query: 212 --TADKTRFNNVYVKNL 226
TADK + N+YVKN
Sbjct: 63 KETADKYQGANLYVKNF 79
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER--RARLQFSQ 411
MRD +G S+ GFV F A++A+KA+ +NGK V K YV AQ+K ER +L+F Q
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
>gi|254584953|ref|XP_002498044.1| ZYRO0G00814p [Zygosaccharomyces rouxii]
gi|238940938|emb|CAR29111.1| ZYRO0G00814p [Zygosaccharomyces rouxii]
Length = 654
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 181/387 (46%), Gaps = 51/387 (13%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +L++GDLD +++ L +F + + SV+VC D T +SLGYGY+N++ + A
Sbjct: 102 TIALFIGDLDEQIDEEILIQIFKKFKSLTSVKVCTDAETGKSLGYGYLNFSRRQDTLAAT 161
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNIL 155
+E N+ P+ GK +RIM S R+ RK+ NIF NL + ++ + +DTF +GNIL
Sbjct: 162 EEFNYRPIFGKEVRIMPSLRNTFYRKNIGTNIFFSNLPLENSNLTTRVFYDTFKVYGNIL 221
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG------------------------- 190
SCK L + + GF+ FDN+ +A+ I + NG
Sbjct: 222 SCK-----LDKRKNIGFIYFDNDHAARVVIKEFNGSEFFGNKILCGIHFDKELRKFPEFE 276
Query: 191 ---MLLND-----KQVFVGPFLRKQ-ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGE 241
LND +Q+ +GP K E +ST N ++VKNL + +D++ F
Sbjct: 277 KRKSSLNDITIPKEQLTLGPTDAKTVEHDSTQHLPHPNAIFVKNLPPSCPDDEILDYFSN 336
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G + S +S + FV + D ++V+ +G +F ++ V KA E
Sbjct: 337 LGPVKSVFSSTSHKYESS-WAFVTYKKGSDTNKAVKIYHGAQFKGRKLSVIKA------E 389
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKEL-FSEFGTITSCKVMRDPNGI 360
G + + + + + LY++NL ++ L ++ E I + + +
Sbjct: 390 SARNGHGSYNKQSSKISYRPI-LYLQNLSSVCNEQFLLQMCMEERIKIENLGITDFFHDS 448
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMV 387
SG+V + ++A K L +N +++
Sbjct: 449 FTYSGYVKCKSKKDADKILKLLNNRLI 475
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 126/294 (42%), Gaps = 34/294 (11%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKL 188
+FI +LD+ ID + L F F ++ S KV TD+ G+S GYG++ F + +A ++
Sbjct: 105 LFIGDLDEQIDEEILIQIFKKFKSLTSVKVCTDAETGKSLGYGYLNFSRRQDTLAATEEF 164
Query: 189 NGMLLNDKQVFVGPFLRKQ-ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
N + K+V + P LR R++ F+N+ ++N + TT F +G I S
Sbjct: 165 NYRPIFGKEVRIMPSLRNTFYRKNIGTNIFFSNLPLENSNLTTRV--FYDTFKVYGNILS 222
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSV-EALNGKKFDDKEWYVGKAQKKYEREMELKG 306
+ K K GF+ FD+ D AAR V + NG +F + G K R+
Sbjct: 223 CKL-----DKRKNIGFIYFDN-DHAARVVIKEFNGSEFFGNKILCGIHFDKELRKFPEFE 276
Query: 307 KFEQSLKETADKFEGLNL----------------------YVKNLDDSISDDKLKELFSE 344
K + SL + E L L +VKNL S DD++ + FS
Sbjct: 277 KRKSSLNDITIPKEQLTLGPTDAKTVEHDSTQHLPHPNAIFVKNLPPSCPDDEILDYFSN 336
Query: 345 FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
G + S + FV + + +KA+ +G + L V A+
Sbjct: 337 LGPVKSV-FSSTSHKYESSWAFVTYKKGSDTNKAVKIYHGAQFKGRKLSVIKAE 389
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 112/197 (56%), Gaps = 39/197 (19%)
Query: 240 GEFGIITSTAVMRDAD-----GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294
G I+ V ++ D SK +GFV+F+ + A R++E +NG +D++ +VG+
Sbjct: 68 GHARIVGQNWVQKEIDLPNKKNGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 127
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
+ + ERE EL + + E N+Y+KN + + D++LK+LF +FG S KVM
Sbjct: 128 KSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM 177
Query: 355 RDPNGISRGSGFVAF------------------------STAEEASKALTEMNGKMVVSK 390
D +G S+G GFV+F S+ EEA+KA+TEMNG++V +K
Sbjct: 178 TDESGKSKGFGFVSFERHEDAQKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 237
Query: 391 PLYVALAQRKEERRARL 407
PLYVALAQRKEER+A L
Sbjct: 238 PLYVALAQRKEERQAHL 254
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 26/172 (15%)
Query: 167 SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVK 224
S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+K
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 150
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD----------------- 267
N E ++ LK +FG+FG S VM D GKSK FGFV+F+
Sbjct: 151 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVMMEGGRSKG 210
Query: 268 -------DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 211 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 262
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 37/186 (19%)
Query: 74 DLSTRR--SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGA--- 127
DL ++ S GYG+V++ A RA++++N LN + + + + R + GA
Sbjct: 83 DLPNKKNGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 142
Query: 128 --GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK--- 182
N++IKN + +D++ L D F FG LS KV TD G+S+G+GFV F+ E A+
Sbjct: 143 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVM 202
Query: 183 ---------------------SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNV 221
A+ ++NG ++ K ++V RK+ER++ N
Sbjct: 203 MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA-----HLTNQ 257
Query: 222 YVKNLS 227
Y++ ++
Sbjct: 258 YMQRMA 263
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 25/108 (23%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 78
A++F T++Y+ + ++D +L DLF + G +SV+V D S +
Sbjct: 141 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 198
Query: 79 --------RSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
RS G+G+V +++ EAT+A+ E+N + KP+ + + R
Sbjct: 199 QKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 246
>gi|302308066|ref|NP_984845.2| AEL016Cp [Ashbya gossypii ATCC 10895]
gi|299789279|gb|AAS52669.2| AEL016Cp [Ashbya gossypii ATCC 10895]
gi|374108067|gb|AEY96974.1| FAEL016Cp [Ashbya gossypii FDAG1]
Length = 678
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 41/298 (13%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++GDLD V + L D FN+ VS ++C D +T++SLGYGY+N++ +A R ++E
Sbjct: 117 ALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLGYGYLNFSNEEDAERVIEE 176
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSC 157
N+ P+ G+ +RIM S R+ RK+ N+F NL + ++ + +D F FG ILSC
Sbjct: 177 FNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLALTTRVFYDAFKKFGKILSC 236
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TAD 214
K L + + GFV F+ + +AK AI + NG + G + R+S
Sbjct: 237 K-----LDRRKNIGFVYFEKDSAAKQAIAEYNGKEFFGNNILCGIHFDRNVRKSPEFEKR 291
Query: 215 KTRF-----------------------------NNVYVKNLSETTTEDDLKKIFGEFGII 245
K R N V++KNL D L F + G +
Sbjct: 292 KARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIKNLPLNPDSDLLLDYFSQIGPV 351
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
S + + + F+ F DA +++ LN + + + +AQK ++ +++
Sbjct: 352 KSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDNLNHSQLLGRTIELSRAQKNFQTDID 408
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 147/314 (46%), Gaps = 36/314 (11%)
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRG 169
+++ S PT+ +FI +LD+ + K L DTF+ F + +S K+ DS +S G
Sbjct: 99 VKLGRSKDSPTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLG 158
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ-ERESTADKTRFNNVYVKNLSE 228
YG++ F NEE A+ I++ N + + ++V + P LR R++ F+N+ ++NL+
Sbjct: 159 YGYLNFSNEEDAERVIEEFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLAL 218
Query: 229 TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
TT F +FG I S + R K GFV F+ A +++ NGK+F
Sbjct: 219 TTRV--FYDAFKKFGKILSCKLDR-----RKNIGFVYFEKDSAAKQAIAEYNGKEFFGNN 271
Query: 289 WYVGKAQKKYEREMELKGKFEQS---------LKE-----------TADKFEGLN---LY 325
G ++R + +FE+ +KE + K +G + ++
Sbjct: 272 ILCG---IHFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVF 328
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNL + D L + FS+ G + S + + ++ F+ F +A A+ +N
Sbjct: 329 IKNLPLNPDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDNLNHS 387
Query: 386 MVVSKPLYVALAQR 399
++ + + ++ AQ+
Sbjct: 388 QLLGRTIELSRAQK 401
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 79/320 (24%)
Query: 35 RQFVSTSLYVGDL---DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
R+ + T+++ +L +L++ YD F + G+++S ++ R R+++G+ Y ++A
Sbjct: 199 RKNIGTNVFFSNLPLENLALTTRVFYDAFKKFGKILSCKLDR----RKNIGFVYFEKDSA 254
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS-------------------------- 125
A +A+ E N G I + D +RKS
Sbjct: 255 --AKQAIAEYNGKEFFGNNILCGIHF-DRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQ 311
Query: 126 -----------GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQ 174
+FIKNL + D+ L D FS G + S + S S + F+
Sbjct: 312 EIPSGSKMKGPHPNAVFIKNLPLNPDSDLLLDYFSQIGPVKSIFTSNVSKLNS-AWAFIT 370
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST------------ADKTRFNN-- 220
F A+ AID LN L + + + R Q+ T + TR N+
Sbjct: 371 FKKGSDAQDAIDNLNHSQLLGRTIELS---RAQKNFQTDIDAANAGAGNNSSTTRSNDSD 427
Query: 221 -------------VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF-GFVNF 266
VY+ +LS +E L+ E I T +R D + F GFV
Sbjct: 428 PCSTQHSSSYKLTVYLSSLSSICSEQFLQCFCAEERIKTKRISIRFYDEATLTFSGFVQC 487
Query: 267 DDPDDAARSVEALNGKKFDD 286
+DA R E LN K D
Sbjct: 488 QTRNDANRLFELLNNKLLGD 507
>gi|123407360|ref|XP_001302992.1| embryonic poly [Trichomonas vaginalis G3]
gi|121884333|gb|EAX90062.1| embryonic poly, putative [Trichomonas vaginalis G3]
Length = 426
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 129/235 (54%), Gaps = 16/235 (6%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL SV+++ + ++F G S V + +V + + A RA+ E+
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 102 NFTPLNGKPIRIMYSYRDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N+T L+G PIRI++S DP + K+ G +FI+ LD++I+ LHD FS FG I+SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCK 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ + G+SRGYGF+ F E+ AK A L +N K + + F +K R++ + F
Sbjct: 126 IPLTN-GKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQI-EFYQKPTRKNPEE--TF 181
Query: 219 NNVYVKNLSETT--TEDDLKKIFGEFGIITST-----AVMRDADGKSKCFGFVNF 266
NV++K L T+DDL F EFG T A+ R DG S FGF++F
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFLHF 236
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 12/148 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++ LD ++ SQL+D F+ G++VS ++ L+ +S GYG++ + +A RA +
Sbjct: 96 ALFIRGLDENIEVSQLHDAFSNFGEIVSCKI--PLTNGKSRGYGFITFYKEDDAKRAKTD 153
Query: 101 LNFTPLNGKPIRIMYSYRDPTIR--KSGAGNIFIKNLDKSI--DNKALHDTFSTFGNILS 156
L +NGKPI+I + Y+ PT + + N+FIK L I + L + F FG+ +
Sbjct: 154 LADASINGKPIQIEF-YQKPTRKNPEETFTNVFIKPLPADIFKTDDDLANFFKEFGDFVV 212
Query: 157 CKVATDSL-----GQSRGYGFVQFDNEE 179
A ++ G S +GF+ F + E
Sbjct: 213 TGKANPAIKRKEDGSSCEFGFLHFKHHE 240
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 17/196 (8%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ V+V +L + E+ +K+IF ++G S T ++ K F FV F+ + A R++
Sbjct: 5 WKEVFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAI 64
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+N K D + ++ + + A K L+++ LD++I
Sbjct: 65 SEVNYTKLDG---------------VPIRILWSDPGTKRAIKNNVGALFIRGLDENIEVS 109
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L + FS FG I SCK+ NG SRG GF+ F ++A +A T++ + KP+ +
Sbjct: 110 QLHDAFSNFGEIVSCKIPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEF 168
Query: 397 AQRKEERRARLQFSQM 412
Q+ + F+ +
Sbjct: 169 YQKPTRKNPEETFTNV 184
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 27/252 (10%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+F+ +L S+D + + F +G+ S V + + FV F++ E AK AI ++
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N L+ + + L A K ++++ L E L F FG I S
Sbjct: 68 NYTKLDGVPIRI---LWSDPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSC 124
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ +GKS+ +GF+ F DDA R+ L + K + QK + E
Sbjct: 125 KIPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQKPTRKNPE----- 178
Query: 309 EQSLKETADKFEGLNLYVKNLDDSI--SDDKLKELFSEFGTITSC-----KVMRDPNGIS 361
ET N+++K L I +DD L F EFG + R +G S
Sbjct: 179 -----ETF-----TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSS 228
Query: 362 RGSGFVAFSTAE 373
GF+ F E
Sbjct: 229 CEFGFLHFKHHE 240
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 166 QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
+S+G+GFV F +ESA++A++ LN K ++G F K+ERE
Sbjct: 283 ESKGFGFVLFKTKESAQNALENAVITPLNGKTPYIGLFKMKEERE 327
>gi|159164292|pdb|2DYD|A Chain A, Solution Structure Of The Pabc Domain From Triticum
Aevestium Poly(A)-Binding Protein
Length = 85
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/77 (85%), Positives = 70/77 (90%)
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
GALASALAN+ PE QR +LGENLYPLVDQLEHD AAKVTGMLLEMDQTEVLHLLESP+AL
Sbjct: 8 GALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDAL 67
Query: 612 KAKVAEAMEVLRNVAQQ 628
KAKVAEAMEVLR+ Q
Sbjct: 68 KAKVAEAMEVLRSAQQH 84
>gi|403331840|gb|EJY64890.1| Polyadenylate-binding protein, putative [Oxytricha trifallax]
Length = 701
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 168/328 (51%), Gaps = 43/328 (13%)
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRK----SGAGNIFIKNLDKSIDNKALHDTFS-TFGN- 153
++ + +NGK R + ++ T + A N+FIKNLDKSI ++ L ++FS G+
Sbjct: 69 DMKYFEINGKQCRALPYLKEVTAAHRNNMNKANNLFIKNLDKSITSQQLDESFSKVLGSD 128
Query: 154 -ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
++S KV+ ++ SRGYGFV + E A+ A+ + + V PF K RE
Sbjct: 129 VVVSAKVSINADYTSRGYGFVCLSSPELAEQALATSDSFKFD-----VHPFNPKDRREL- 182
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV-MRDADGKSKC--FGFVNFDDP 269
+ FNN+Y+KN ++ +++IFG++G I ST + M G + F FV ++DP
Sbjct: 183 --RKTFNNIYIKNFPSIWNQEKIEQIFGQYGTIKSTFIKMGKVQGTDQEAPFAFVCYEDP 240
Query: 270 DD-------AARSVEALNGKKFDDKEWYVGKAQKKYEREMELK---GKFEQSLKETADKF 319
D+ A +V N K++D + YV +A K ERE E K +F+ S K
Sbjct: 241 DNKEYGPRCALNAVTQENEKEYDGIKLYVKEALPKKEREQEKKREQNRFKNSKKRC---- 296
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS---GFVAFSTAEEAS 376
NLYVKN ++ ++++LK F ++G I S K+ + G+ FV + E A+
Sbjct: 297 ---NLYVKNFPENTTEEQLKAYFEKYGEIESIKL-----NLKEGAAVYAFVCYKNPESAT 348
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERR 404
A + + + K L++ ++KE R+
Sbjct: 349 YAKQQSQTQTLNGKQLFLNFYEQKEVRK 376
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 35/257 (13%)
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
V+ ++ + K + +N KQ P+L++ + + NN+++KNL ++
Sbjct: 53 AMVRINDNDKFKDVARDMKYFEINGKQCRALPYLKEVTAAHRNNMNKANNLFIKNLDKSI 112
Query: 231 TEDDLKKIFGEF---GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
T L + F + ++ S V +AD S+ +GFV P+ A +++ + KFD
Sbjct: 113 TSQQLDESFSKVLGSDVVVSAKVSINADYTSRGYGFVCLSSPELAEQALATSDSFKFD-- 170
Query: 288 EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGT 347
V K RE L++T + N+Y+KN + +K++++F ++GT
Sbjct: 171 ---VHPFNPKDRRE----------LRKTFN-----NIYIKNFPSIWNQEKIEQIFGQYGT 212
Query: 348 ITSCKV-MRDPNGISRGSGFVAFSTAEE----------ASKALTEMNGKMVVSKPLYVAL 396
I S + M G + + F AF E+ A A+T+ N K LYV
Sbjct: 213 IKSTFIKMGKVQGTDQEAPF-AFVCYEDPDNKEYGPRCALNAVTQENEKEYDGIKLYVKE 271
Query: 397 AQRKEERRARLQFSQMR 413
A K+ER + Q R
Sbjct: 272 ALPKKEREQEKKREQNR 288
>gi|384248056|gb|EIE21541.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 537
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 112/194 (57%), Gaps = 11/194 (5%)
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
+E+ T +V+V LS + + LK++FG G + S VMRD G S+ FGFVNF
Sbjct: 14 QEAVNPATESCSVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTK 73
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK-FEGLNLYVK 327
D+A R+++ N W V KA+K+ K EQ + +++ + NL+++
Sbjct: 74 ADEADRAIQQFNKIPHCAGTWLVRKAEKR---------KPEQKAGQVSEQGLDLCNLFIR 124
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKM 386
++ IS +L+ +F FG + S K++ DP G S+ +GF+ F+ EEA++A+ EMNGK
Sbjct: 125 GVEPEISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQ 184
Query: 387 VVSKPLYVALAQRK 400
V SK L+V LAQ++
Sbjct: 185 VGSKRLFVTLAQKR 198
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 15/194 (7%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
++F+ L + ++ L + F G + S V D G SRG+GFV F + A AI +
Sbjct: 25 SVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTKADEADRAIQQF 84
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKT--------RFNNVYVKNLSETTTEDDLKKIFG 240
N + V RK E+ K N++++ + + L+ +F
Sbjct: 85 NKIPHCAGTWLV----RKAEKRKPEQKAGQVSEQGLDLCNLFIRGVEPEISSIRLQSMFE 140
Query: 241 EFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG + S+ ++ D G SKC GF+ F P++AAR++ +NGK+ K +V AQK+
Sbjct: 141 AFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQVGSKRLFVTLAQKRAT 200
Query: 300 REME--LKGKFEQS 311
+ + + FEQS
Sbjct: 201 TDPQGIIHPPFEQS 214
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 15/188 (7%)
Query: 27 NNGGVGDARQFV-----STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
NGG A++ V S S++V L L V+ L ++F ++G+V S V RD S
Sbjct: 6 TNGGGPGAQEAVNPATESCSVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRD-HFGASR 64
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIK 133
G+G+VN+ A EA RA+ + N P + + + +K+G N+FI+
Sbjct: 65 GFGFVNFTKADEADRAIQQFNKIPHCAGTWLVRKAEKRKPEQKAGQVSEQGLDLCNLFIR 124
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
++ I + L F FG ++S K+ D G S+ GF++F E A AI ++NG
Sbjct: 125 GVEPEISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQ 184
Query: 193 LNDKQVFV 200
+ K++FV
Sbjct: 185 VGSKRLFV 192
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+L++ ++ ++ +L +F G+VVS ++ D T S G++ + EA RA+
Sbjct: 119 CNLFIRGVEPEISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIH 178
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSG 126
E+N + K + + + + T G
Sbjct: 179 EMNGKQVGSKRLFVTLAQKRATTDPQG 205
>gi|403354844|gb|EJY76981.1| Polyadenylate-binding protein, putative [Oxytricha trifallax]
Length = 590
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 144/552 (26%), Positives = 247/552 (44%), Gaps = 61/552 (11%)
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRK----SGAGNIFIKNLDKSIDNKALHDTFSTF--GN 153
++ + +NGK R + ++ T + + N+FIKNLDKSI ++ L +TFS G+
Sbjct: 69 DMKYFEINGKQCRALPYLKEVTAAQRNNVNKQNNLFIKNLDKSITSQQLDETFSKVLGGD 128
Query: 154 IL-SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
++ S KV+ ++ SRGYGFV E A+ A+ K + V P+ K RE
Sbjct: 129 VVVSAKVSINADYSSRGYGFVFLATPEQAEQALAKASEFKFE-----VHPYQPKDRREI- 182
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV-MRDADGKSKC--FGFVNFDDP 269
+ FNN+Y+KN ++ +++IFG++G I ST + M G + F FV ++D
Sbjct: 183 --RKTFNNIYIKNFPSNWNKEKIEQIFGQYGTIKSTVIKMGKVQGTDQEAPFAFVCYEDK 240
Query: 270 DD-------AARSVEALNGKKFDDKEWYVGKAQKKYEREMELK---GKFEQSLKETADKF 319
D+ A ++ N K++D + YV +A K RE E K +F+ S K
Sbjct: 241 DNKEYGPKCALNAINQENDKEYDGIKLYVKEALPKTLREQEKKREQNRFKNSKKRC---- 296
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
NLYVKN ++ ++++LK F ++G I S K+ FV + E A+ A
Sbjct: 297 ---NLYVKNFPENTTEEQLKAYFEKYGEIESIKLNHKEGAAV--YAFVCYKNPESATYAK 351
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQG 439
+ + + K L++ ++KE R+ + + ++ R P A +
Sbjct: 352 QQSQTQTLNGKQLFLNFYEQKEVRKIQQEDARDRTDFQNLRKQSPTSALNID-------- 403
Query: 440 PPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ- 498
++ F Q L+ ++ Q QR GG GP QQ Q
Sbjct: 404 --MLNRPETFQLLQYLMITIQR---QQQNQRYNNPQRQGGNMQQRGPRQQYNNQGGYQQR 458
Query: 499 PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIG------GMPFRDAAFSQPMQTG 552
+ LP+G++ P PV +P ++P + +P ++Q +
Sbjct: 459 NQQLPQGQMPPMNQQMRQPQQPVI-MPSQVMPALAQVAPSAMNQNLPPHILTYNQNGMSK 517
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLE-HDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
L +A ++ +GE +Y V++L D A K+TGML+++ E+ + L
Sbjct: 518 IF--PLVSALNPNYKSQVGEFIYEHVEELAGEDLAPKITGMLIDLPIVEIQAYVTDFMKL 575
Query: 612 KAKVAEAMEVLR 623
K K+ EA +L+
Sbjct: 576 KIKINEASTLLK 587
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 116/264 (43%), Gaps = 42/264 (15%)
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
V+ ++ + K + +N KQ P+L++ + + NN+++KNL ++
Sbjct: 53 AMVRINDNDKFKDVARDMKYFEINGKQCRALPYLKEVTAAQRNNVNKQNNLFIKNLDKSI 112
Query: 231 TEDDLKKIFGEF---GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
T L + F + ++ S V +AD S+ +GFV P+ A +++ + KF+
Sbjct: 113 TSQQLDETFSKVLGGDVVVSAKVSINADYSSRGYGFVFLATPEQAEQALAKASEFKFE-- 170
Query: 288 EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGT 347
V Q K RE +++T + N+Y+KN + + +K++++F ++GT
Sbjct: 171 ---VHPYQPKDRRE----------IRKTFN-----NIYIKNFPSNWNKEKIEQIFGQYGT 212
Query: 348 ITSCKV-MRDPNGISRGSGFVAFSTAEE----------ASKALTEMNGKMVVSKPLYVAL 396
I S + M G + + F AF E+ A A+ + N K LYV
Sbjct: 213 IKSTVIKMGKVQGTDQEAPF-AFVCYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKE 271
Query: 397 A-------QRKEERRARLQFSQMR 413
A Q K+ + R + S+ R
Sbjct: 272 ALPKTLREQEKKREQNRFKNSKKR 295
>gi|351699217|gb|EHB02136.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 205
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R + SL VGDL ++ LY+ F++ G V+ +RVC D+ TRRSLG+ YV++ EA
Sbjct: 6 RSYPVASLSVGDLHSDAAEAVLYEKFSRAGPVLPIRVCGDVITRRSLGHAYVSFQQPAEA 65
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
RALD +NF + GK I IM+ +DP++ KSG GN+FIKNLDKSIDNKAL+DTFS
Sbjct: 66 ERALDTMNFDGIKGKQIYIMWPQKDPSLTKSGVGNVFIKNLDKSIDNKALYDTFSAL 122
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 594 LEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
LEMD +E+LH LESP++L +KV EA+ VL+
Sbjct: 150 LEMDNSELLHTLESPKSLHSKVDEAVAVLQ 179
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+ +R ++ + +L L++ FS G +L +V D + + S G+ +V F
Sbjct: 2 NAAVRSYPVASLSVGDLHSDAAEAVLYEKFSRAGPVLPIRVCGDVITRRSLGHAYVSFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N + KQ+++ +++ + K+ NV++KNL ++ D K
Sbjct: 62 PAEAERALDTMNFDGIKGKQIYI----MWPQKDPSLTKSGVGNVFIKNLDKSI---DNKA 114
Query: 238 IFGEFGII 245
++ F +
Sbjct: 115 LYDTFSAL 122
>gi|432092097|gb|ELK24806.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 179
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 77/115 (66%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYV DL V D+ LY+ F+ V+S+ VC + SLGY Y+N+ +
Sbjct: 5 ASSYPMASLYVADLHWDVTDAMLYEQFSPARPVLSIWVCHNKIISHSLGYAYINFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
A RALD +NF + GKPI IM+S RDP++RKS GNIFIK LDKSIDNKAL+DTF
Sbjct: 65 AERALDTMNFDVIKGKPIHIMWSQRDPSVRKSAVGNIFIKKLDKSIDNKALYDTF 119
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAID 186
++++ +L + + L++ FS +LS V + + S GY ++ F A+ A+D
Sbjct: 11 ASLYVADLHWDVTDAMLYEQFSPARPVLSIWVCHNKIISHSLGYAYINFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
+N ++ K + + +R+ + K+ N+++K L ++ L F
Sbjct: 71 TMNFDVIKGKPIHI----MWSQRDPSVRKSAVGNIFIKKLDKSIDNKALYDTF 119
>gi|410927510|ref|XP_003977185.1| PREDICTED: ELAV-like protein 1-like [Takifugu rubripes]
Length = 341
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 150/314 (47%), Gaps = 51/314 (16%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG ++ G G+ + T+L V L +++ +L LF+ +G+V S ++ RD SL
Sbjct: 18 SNGYEDHMGGGEGKD-AKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKIAGHSL 76
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A RA++ LN L K I++ SY P+ N++I L KS+
Sbjct: 77 GYGFVNYVTPSDAERAINTLNGLRLQSKNIKV--SYARPSSDTIKDANLYISGLPKSMTQ 134
Query: 142 KALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG---------- 190
K + D FS FG I++ +V D + G SRG F++FD A+ A++ LNG
Sbjct: 135 KDVEDMFSRFGRIINSRVLVDQATGASRGVAFIRFDKRAEAEDAVNNLNGQKPSGVVEPI 194
Query: 191 -------------------MLLNDKQVFVGPFLRKQER--------------ESTADKTR 217
+ N + F GP + +R + T
Sbjct: 195 TVKFAANPNQTKNTQVISQLFHNQSRRFGGPLHHQAQRFRFSPMSVDHMGGVGGVSVPTN 254
Query: 218 FNN---VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAA 273
NN +++ NL + E L ++FG FG +T+ V+RD K K FGFV + +DAA
Sbjct: 255 SNNGWCIFIYNLGQEADETILWQMFGPFGAVTNVKVIRDFTTNKCKGFGFVTMSNYEDAA 314
Query: 274 RSVEALNGKKFDDK 287
++ +LNG + +K
Sbjct: 315 MAIASLNGYRLGEK 328
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 138/317 (43%), Gaps = 43/317 (13%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAK 182
K N+ + L +++ + L FS+ G + S K+ D + G S GYGFV + A+
Sbjct: 31 KDAKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKIAGHSLGYGFVNYVTPSDAE 90
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI+ LNG+ L K + V + R ++D + N+Y+ L ++ T+ D++ +F F
Sbjct: 91 RAINTLNGLRLQSKNIKV-SYAR-----PSSDTIKDANLYISGLPKSMTQKDVEDMFSRF 144
Query: 243 GIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDKEWY 290
G I ++ V+ D A G S+ F+ FD +A +V LNG+K F
Sbjct: 145 GRIINSRVLVDQATGASRGVAFIRFDKRAEAEDAVNNLNGQKPSGVVEPITVKFAANPNQ 204
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVK 327
Q + +F L A +F G +++
Sbjct: 205 TKNTQVISQLFHNQSRRFGGPLHHQAQRFRFSPMSVDHMGGVGGVSVPTNSNNGWCIFIY 264
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKM 386
NL + L ++F FG +T+ KV+RD +G GFV S E+A+ A+ +NG
Sbjct: 265 NLGQEADETILWQMFGPFGAVTNVKVIRDFTTNKCKGFGFVTMSNYEDAAMAIASLNGYR 324
Query: 387 VVSKPLYVALAQRKEER 403
+ K L V+ K +
Sbjct: 325 LGEKILQVSFKTSKGHK 341
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + ++++L+ +F G + S ++RD G S +GFVN+ P DA R++
Sbjct: 36 NLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKIAGHSLGYGFVNYVTPSDAERAINT 95
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG + K V A + ++D + NLY+ L S++ +
Sbjct: 96 LNGLRLQSKNIKVSYA------------------RPSSDTIKDANLYISGLPKSMTQKDV 137
Query: 339 KELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKM--VVSKPLYVA 395
+++FS FG I + +V+ D G SRG F+ F EA A+ +NG+ V +P+ V
Sbjct: 138 EDMFSRFGRIINSRVLVDQATGASRGVAFIRFDKRAEAEDAVNNLNGQKPSGVVEPITVK 197
Query: 396 LAQRKEERRARLQFSQM 412
A + + SQ+
Sbjct: 198 FAANPNQTKNTQVISQL 214
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 287 KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
++W+ + Y+ + +E + K NL V L ++S ++L+ LFS G
Sbjct: 4 QQWHNDNKNEVYD----MSNGYEDHMGGGEGKDAKTNLIVNYLPQNMSQEELRSLFSSIG 59
Query: 347 TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ S K++RD G S G GFV + T +A +A+ +NG + SK + V+ A+
Sbjct: 60 EVESAKLIRDKIAGHSLGYGFVNYVTPSDAERAINTLNGLRLQSKNIKVSYAR 112
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L +++ L+ +F G V +V+V RD +T + G+G+V + +A A+ L
Sbjct: 261 IFIYNLGQEADETILWQMFGPFGAVTNVKVIRDFTTNKCKGFGFVTMSNYEDAAMAIASL 320
Query: 102 NFTPLNGKPIRIMY 115
N L K +++ +
Sbjct: 321 NGYRLGEKILQVSF 334
>gi|440293231|gb|ELP86374.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 538
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 172/352 (48%), Gaps = 25/352 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+++V L +V +S LY + QV SV V R+ ++ Y VN N A +A+
Sbjct: 14 TVFVSGLTKNVTESLLYKEISAKFESQVASVHVSRNEHYDTAIAY--VNMNTHEAAKKAI 71
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ +N ++GKP+ + +S +D R N+F+KN+ K++ K + D F TFG I+S K
Sbjct: 72 ETMNGALIDGKPVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVK 131
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
++ + G S G+G+V++ E+A A++ N + K + K E+++ KT
Sbjct: 132 LSVNENGASNGFGYVKYRTIEAALKAVE--NAAEIKAKIGEDNFIVAKFEKQTKNKKT-- 187
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITST------AVMRDADGKSKCFGFVNFDDPDDA 272
N+YV N+ ++ E+ K F FG + + D GFV+F++ +DA
Sbjct: 188 -NLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFASKDEYPTAMGFVDFENEEDA 246
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD- 331
+++ A E V K ER+ E + K + + K++ N+YVK +D
Sbjct: 247 QKALTAPKNNVLGQGEIKVVYYMSKKERKREYQLKNNEIMASIKGKYKEFNMYVKTSNDS 306
Query: 332 --SISDDKLKELFSEFGTITSCKVM---RDPNGISRGSGFVAFSTAEEASKA 378
S SD +++ F++ G I S ++ + P ++ +V F++ E KA
Sbjct: 307 EHSTSDAEIRSAFADCGEIYSIRIKYFNKSPTDVA----YVCFTSQEGYDKA 354
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 27/239 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R T+L+V ++ +V+ ++ D+F G+++SV++ + S G+GYV Y A
Sbjct: 96 RTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVN-ENGASNGFGYVKYRTIEAA 154
Query: 95 TRALDE-LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG- 152
+A++ G+ I+ + T K+ N+++ N+DKS++ + F TFG
Sbjct: 155 LKAVENAAEIKAKIGEDNFIVAKFEKQT--KNKKTNLYVSNIDKSVNEEQFVKYFETFGP 212
Query: 153 ------NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
N A+ + GFV F+NEE A+ A+ +L ++ V ++ K
Sbjct: 213 LRKNPDNKFQVLFASKDEYPT-AMGFVDFENEEDAQKALTAPKNNVLGQGEIKVVYYMSK 271
Query: 207 QERE------------STADKTRFNNVYVK--NLSETTTED-DLKKIFGEFGIITSTAV 250
+ER+ S K + N+YVK N SE +T D +++ F + G I S +
Sbjct: 272 KERKREYQLKNNEIMASIKGKYKEFNMYVKTSNDSEHSTSDAEIRSAFADCGEIYSIRI 330
>gi|49658982|emb|CAE01482.1| HUR [Tetraodon nigroviridis]
Length = 325
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 150/314 (47%), Gaps = 51/314 (16%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG ++ G G+ + T+L V L +++ +L LF+ +G+V S ++ RD SL
Sbjct: 2 SNGYEDHMG-GEEGKDAKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKVAGHSL 60
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A RA+ LN L K I++ SY P+ N++I L KS+
Sbjct: 61 GYGFVNYVNPSDAERAISTLNGLRLQSKNIKV--SYARPSSDTIKDANLYISGLPKSMTQ 118
Query: 142 KALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG---------- 190
K + D FS FG I++ +V D + G SRG F++FD A+ AI+ LNG
Sbjct: 119 KDVEDMFSQFGRIINSRVLVDQATGVSRGVAFIRFDKRAEAEDAINNLNGQKPSEAIEPI 178
Query: 191 -------------------MLLNDKQVFVGPFLRKQER--------------ESTADKTR 217
+ N + F GP + +R + T
Sbjct: 179 TVKFAANPNQTKNTQVISQLFHNQSRRFGGPLHHQAQRFRFSPMGVDHMGGVGGVSVPTS 238
Query: 218 FNN---VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAA 273
NN +++ NL + E L ++FG FG +T+ V+RD + K K FGFV + +DAA
Sbjct: 239 SNNGWCIFIYNLGQEADETILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMSNYEDAA 298
Query: 274 RSVEALNGKKFDDK 287
++ +LNG + DK
Sbjct: 299 MAIASLNGYRLGDK 312
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 140/317 (44%), Gaps = 43/317 (13%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAK 182
K N+ + L +++ + L FS+ G + S K+ D + G S GYGFV + N A+
Sbjct: 15 KDAKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVNPSDAE 74
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI LNG+ L K + V + R ++D + N+Y+ L ++ T+ D++ +F +F
Sbjct: 75 RAISTLNGLRLQSKNIKV-SYARP-----SSDTIKDANLYISGLPKSMTQKDVEDMFSQF 128
Query: 243 GIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDKEWY 290
G I ++ V+ D A G S+ F+ FD +A ++ LNG+K F
Sbjct: 129 GRIINSRVLVDQATGVSRGVAFIRFDKRAEAEDAINNLNGQKPSEAIEPITVKFAANPNQ 188
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVK 327
Q + +F L A +F G +++
Sbjct: 189 TKNTQVISQLFHNQSRRFGGPLHHQAQRFRFSPMGVDHMGGVGGVSVPTSSNNGWCIFIY 248
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
NL + L ++F FG +T+ KV+RD N +G GFV S E+A+ A+ +NG
Sbjct: 249 NLGQEADETILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMSNYEDAAMAIASLNGYR 308
Query: 387 VVSKPLYVALAQRKEER 403
+ K L V+ K +
Sbjct: 309 LGDKILQVSFKTSKGHK 325
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 24 GIANNGGVGDARQFVSTS----LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
G+ + GGVG S++ +++ +L +++ L+ +F G V +V+V RD +T +
Sbjct: 223 GVDHMGGVGGVSVPTSSNNGWCIFIYNLGQEADETILWQMFGPFGAVTNVKVIRDFNTNK 282
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
G+G+V + +A A+ LN L K +++ +
Sbjct: 283 CKGFGFVTMSNYEDAAMAIASLNGYRLGDKILQVSF 318
>gi|366988141|ref|XP_003673837.1| hypothetical protein NCAS_0A08980 [Naumovozyma castellii CBS 4309]
gi|342299700|emb|CCC67456.1| hypothetical protein NCAS_0A08980 [Naumovozyma castellii CBS 4309]
Length = 605
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 112/461 (24%), Positives = 207/461 (44%), Gaps = 70/461 (15%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
+R+ + TSL++ L V ++ LYD+F++ +VS+++C D +++SL YGY+N++ E
Sbjct: 86 SRKRIVTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFSDELE 145
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFST 150
A +A+D+ N+T L G I++M S R+ RK+ N+F NL +K + +A +DTF
Sbjct: 146 AKKAVDDFNYTILFGNEIKMMPSLRNTIYRKNIGTNVFFANLPLENKHLTTRAFYDTFKG 205
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ--- 207
+G ILSCK L + + GFV FDN++ A+ I+ N + ++ G K+
Sbjct: 206 YGEILSCK-----LDKRKNIGFVYFDNDKPAQMVINDFNNKIYFGNKIICGLHFDKEIRN 260
Query: 208 -----ERESTADK--------------TRF-----------NNVYVKNLSETTTEDDLKK 237
+R++ D +F N ++VKNL ++++
Sbjct: 261 FPNFDKRKANIDNKIIIDDELEAANIGVQFKKNSELILPHPNAIFVKNLPFDVPDEEILD 320
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F + G + S KS + F+ + D R+ N KF K V +A+
Sbjct: 321 HFSKLGPVKSVFSSNVTKYKSS-WAFITYKKQTDTIRATNHFNNTKFQGKTITVSRAK-- 377
Query: 298 YEREMELKGKFEQSLKETADKFEG-LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
LK T EG +Y+ N+ + + L+ L + G I + K+
Sbjct: 378 --------------LKNT----EGNRTVYLNNVSVVCNQEFLRRLCLQEG-IKAQKIYLK 418
Query: 357 PNGIS--RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE-ERRARLQFSQMR 413
P+ SG++ ++ + A + +NGK + ++V+ + K+ + + +Q +
Sbjct: 419 PDDHDSYSCSGYIKCNSKDNAKRVFEILNGKFIGGCYIHVSWDKIKDPLKDEQSDITQNK 478
Query: 414 PPVGPRMPMYPPVAPGLGQQLFYGQG---PPIIPPQPGFGY 451
+ P + + P G + Y + I +P Y
Sbjct: 479 HNILPNLFLPNPAIQKHGNFISYKESNVTTEFISDKPSNHY 519
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 122/306 (39%), Gaps = 31/306 (10%)
Query: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFD 176
R+ RK ++FI L + L+D FS + +++S K+ DS + S YG++ F
Sbjct: 82 RNYRSRKRIVTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFS 141
Query: 177 NEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ-ERESTADKTRFNNVYVKNLSETTTEDDL 235
+E AK A+D N +L ++ + P LR R++ F N+ ++N TT
Sbjct: 142 DELEAKKAVDDFNYTILFGNEIKMMPSLRNTIYRKNIGTNVFFANLPLENKHLTTRA--F 199
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
F +G I S + K K GFV FD+ A + N K + + G
Sbjct: 200 YDTFKGYGEILSCKL-----DKRKNIGFVYFDNDKPAQMVINDFNNKIYFGNKIICGLHF 254
Query: 296 KKYEREMELKGKFEQSLKETA---DKFEGLNL------------------YVKNLDDSIS 334
K R K + ++ D+ E N+ +VKNL +
Sbjct: 255 DKEIRNFPNFDKRKANIDNKIIIDDELEAANIGVQFKKNSELILPHPNAIFVKNLPFDVP 314
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+++ + FS+ G + S + F+ + + +A N K + V
Sbjct: 315 DEEILDHFSKLGPVKSV-FSSNVTKYKSSWAFITYKKQTDTIRATNHFNNTKFQGKTITV 373
Query: 395 ALAQRK 400
+ A+ K
Sbjct: 374 SRAKLK 379
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 31/241 (12%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSKCFGFVNFDDPDDAARSVEAL 279
+++ L++ TE+ L +F ++ + S + D+D KS +G++NF D +A ++V+
Sbjct: 94 LFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFSDELEAKKAVDDF 153
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA-DKFEGLNLYVKNL---DDSISD 335
N Y + K SL+ T K G N++ NL + ++
Sbjct: 154 N-----------------YTILFGNEIKMMPSLRNTIYRKNIGTNVFFANLPLENKHLTT 196
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+ F +G I SCK+ + N GFV F + A + + N K+ +
Sbjct: 197 RAFYDTFKGYGEILSCKLDKRKN-----IGFVYFDNDKPAQMVINDFNNKIYFGNKIICG 251
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPPV-APGLGQQLFYGQGPPIIPPQPGFGYQQQ 454
L KE R F + + + ++ + + A +G Q + + +I P P + +
Sbjct: 252 LHFDKEIRNFP-NFDKRKANIDNKIIIDDELEAANIGVQ--FKKNSELILPHPNAIFVKN 308
Query: 455 L 455
L
Sbjct: 309 L 309
>gi|403221974|dbj|BAM40106.1| splicing factor 3b subunit 4 [Theileria orientalis strain Shintoku]
Length = 326
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 101/176 (57%), Gaps = 4/176 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+G+LD+ ++ L++ F Q G+V S+ + RD T + G+G+V Y +A AL
Sbjct: 19 TLYIGNLDIQADEELLWEFFMQAGRVRSINIPRDKVTGQHQGFGFVEYETETDADYALRI 78
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF L KP+R+ + +D + GA N+FI N+D +D K LHDTFS FG ++ K+
Sbjct: 79 LNFIKLYHKPLRLNKASKDKENTEIGA-NLFIGNIDDEVDEKLLHDTFSAFGTVVFTKIV 137
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ---ERESTA 213
D R Y FV FDN ES+ +A+ +NG L +K + V +K ER +A
Sbjct: 138 RDEANSGRSYAFVSFDNFESSDAALASMNGQFLCNKPIHVSYAYKKDTKGERHGSA 193
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 18/197 (9%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
S D+ + +Y+ NL E+ L + F + G + S + RD G+ + FGFV ++
Sbjct: 10 SLYDRNQEATLYIGNLDIQADEELLWEFFMQAGRVRSINIPRDKVTGQHQGFGFVEYETE 69
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
DA ++ LN K K + KA K E E+ G NL++ N+
Sbjct: 70 TDADYALRILNFIKLYHKPLRLNKASKDKENT-EI----------------GANLFIGNI 112
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DD + + L + FS FGT+ K++RD R FV+F E + AL MNG+ + +
Sbjct: 113 DDEVDEKLLHDTFSAFGTVVFTKIVRDEANSGRSYAFVSFDNFESSDAALASMNGQFLCN 172
Query: 390 KPLYVALAQRKEERRAR 406
KP++V+ A +K+ + R
Sbjct: 173 KPIHVSYAYKKDTKGER 189
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAID 186
++I NLD D + L + F G + S + D + GQ +G+GFV+++ E A A+
Sbjct: 18 ATLYIGNLDIQADEELLWEFFMQAGRVRSINIPRDKVTGQHQGFGFVEYETETDADYALR 77
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFN-NVYVKNLSETTTEDDLKKIFGEFGII 245
LN + L K LR + + T N+++ N+ + E L F FG +
Sbjct: 78 ILNFIKLYHKP------LRLNKASKDKENTEIGANLFIGNIDDEVDEKLLHDTFSAFGTV 131
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
T ++RD + + FV+FD+ + + ++ ++NG+ +K +V A KK
Sbjct: 132 VFTKIVRDEANSGRSYAFVSFDNFESSDAALASMNGQFLCNKPIHVSYAYKK 183
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ +L++G++D V++ L+D F+ G VV ++ RD Y +V+++ + A
Sbjct: 103 IGANLFIGNIDDEVDEKLLHDTFSAFGTVVFTKIVRD-EANSGRSYAFVSFDNFESSDAA 161
Query: 98 LDELNFTPLNGKPIRIMYSYRDPT 121
L +N L KPI + Y+Y+ T
Sbjct: 162 LASMNGQFLCNKPIHVSYAYKKDT 185
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 180/393 (45%), Gaps = 42/393 (10%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF G++V +V + T S GYG+V Y+
Sbjct: 196 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDP 255
Query: 92 HEATRALDELNFTPLNGKPIRIMY-----SYRDPTIRKSG-----------AGNIFIKNL 135
H AT A++ +N ++GK + + S +P+I+ +++++NL
Sbjct: 256 HSATAAINRMNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNL 315
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
S+ + L F FG I+ KV D + G ++GYGFV++ N A +AI LNG L+
Sbjct: 316 SLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVE 375
Query: 195 DKQV-----FVGPFLRKQERESTAD-----KTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
K++ V P L ES D + N+YV N+ + L +IF FG
Sbjct: 376 GKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLIEIFLPFGK 435
Query: 245 ITSTAVMRDA---DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
IT V GK + +GFV F D AA ++ ++G + + V A
Sbjct: 436 ITHARVAAHQGTYSGKGR-YGFVKFADSQCAAEAITLMDGALVEGETLVVRVAG----LS 490
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
L + + +Y+ NL S + D + +LF FG I+ KV+ ++
Sbjct: 491 SSASSPAVHGLPIPSPEINKSRIYITNLPRSTNADMMVKLFVPFGQIS--KVV-----MN 543
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
V ++ A KA+ M+G M+ K L V
Sbjct: 544 LEYSLVYYADVASAVKAIKHMDGYMIGGKRLVV 576
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 174/387 (44%), Gaps = 48/387 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYV +L LS+ +L F G+++ +V RD +T + GYG+V Y+ +HEA A+
Sbjct: 308 SSLYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAII 367
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------------GNIFIKNLDKSIDNKALH 145
LN + GK + + S P + S N+++ N+ SID K L
Sbjct: 368 HLNGHLVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLI 427
Query: 146 DTFSTFGNILSCKVATDS---LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
+ F FG I +VA G+ R YGFV+F + + A AI ++G L+ + + V
Sbjct: 428 EIFLPFGKITHARVAAHQGTYSGKGR-YGFVKFADSQCAAEAITLMDGALVEGETLVVRV 486
Query: 203 FLRKQERESTA-----------DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
S A +K+R +Y+ NL +T D + K+F FG I+ +
Sbjct: 487 AGLSSSASSPAVHGLPIPSPEINKSR---IYITNLPRSTNADMMVKLFVPFGQISKVVMN 543
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE-Q 310
+ + V + D A ++++ ++G K V ++ + G Q
Sbjct: 544 LE-------YSLVYYADVASAVKAIKHMDGYMIGGKRLVVRRSDSC---PTDAAGHTSTQ 593
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
SL + + + N++V + +++ D+L ELF FG I +V + +G G F+
Sbjct: 594 SLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQH-----QGYGMFRFN 648
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALA 397
A+ A+ MNG + L V +A
Sbjct: 649 DPFSAAAAIDHMNGYQIGGSALVVRVA 675
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 161/392 (41%), Gaps = 56/392 (14%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG-YGYVNYNAAHEATRALD 99
+LYV ++ S++ +L ++F G++ RV T G YG+V + + A A+
Sbjct: 411 NLYVCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAIT 470
Query: 100 ELNFTPLNGKPIRIMYS---------------YRDPTIRKSGAGNIFIKNLDKSIDNKAL 144
++ + G+ + + + P I KS I+I NL +S + +
Sbjct: 471 LMDGALVEGETLVVRVAGLSSSASSPAVHGLPIPSPEINKS---RIYITNLPRSTNADMM 527
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV---- 200
F FG I + + Y V + + SA AI ++G ++ K++ V
Sbjct: 528 VKLFVPFGQISKVVMNLE-------YSLVYYADVASAVKAIKHMDGYMIGGKRLVVRRSD 580
Query: 201 ------GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
Q + NV+V + T D L ++F FG I V
Sbjct: 581 SCPTDAAGHTSTQSLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVF--- 637
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKE 314
+ + +G F+DP AA +++ +NG + V A + G F + +
Sbjct: 638 --QHQGYGMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVAG------LPNPGDFSAATDD 689
Query: 315 TADKFEG--------LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365
+ G NLYV +L I+ +KL E+F G IT +V+ D GIS+G G
Sbjct: 690 LKLQMPGNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFG 749
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
FV F+ A+ ALT MNG + L V +A
Sbjct: 750 FVRFADTYSAAVALTHMNGYPLEGHILEVRIA 781
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELF 342
+FDD++ ++GK Q+ + GK LKE + NLYV NL S+ KL ELF
Sbjct: 173 QFDDQDKHLGKRQEHTLPLSQEGGK----LKEV----DNTNLYVGNLPASVGSHKLIELF 224
Query: 343 SEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
FG I KV + G+S+G GFV + A+ A+ MNG++V K L V +A
Sbjct: 225 LPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINRMNGRLVDGKILEVRVA 280
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 25/177 (14%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
+ ++ +++VG + +VN QL +LF GQ+V VRV + GYG +N
Sbjct: 598 EVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQH------QGYGMFRFNDPF 651
Query: 93 EATRALDELNFTPLNGKPIRIM---------YSYRDPTI---------RKSGAGNIFIKN 134
A A+D +N + G + + +S + R+ N+++ +
Sbjct: 652 SAAAAIDHMNGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMPGNEGRQIDMANLYVCH 711
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
L I + L + F G I +V TD G S+G+GFV+F + SA A+ +NG
Sbjct: 712 LPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFADTYSAAVALTHMNG 768
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 12 VAVAAQPSP-----ATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
V VA P+P AT+ + + RQ +LYV L L + +L ++F GQ+
Sbjct: 672 VRVAGLPNPGDFSAATDDLKLQMPGNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQI 731
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPT 121
RV D T S G+G+V + + A AL +N PL G + + + P+
Sbjct: 732 TQARVVTDRYTGISKGFGFVRFADTYSAAVALTHMNGYPLEGHILEVRIAGVHPS 786
>gi|156849127|ref|XP_001647444.1| hypothetical protein Kpol_1018p122 [Vanderwaltozyma polyspora DSM
70294]
gi|156118130|gb|EDO19586.1| hypothetical protein Kpol_1018p122 [Vanderwaltozyma polyspora DSM
70294]
Length = 634
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 128/249 (51%), Gaps = 35/249 (14%)
Query: 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
N V +++Q S +LY+GDL+ V + L + F ++SV++C D + SLGYGY+N
Sbjct: 89 NNNVIESKQ--SIALYIGDLEKFVTEDMLKNFFAMYKSLLSVKICVDSHSGESLGYGYLN 146
Query: 88 YNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKAL 144
EA ++ N+TP+ GK +RIM S R+ RK+ N+F +L +KSI +
Sbjct: 147 LTTKEEADDLMERFNYTPIFGKVVRIMPSLRNSQTRKNMGTNVFFSDLPLSEKSITTRDF 206
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG-MLLNDKQVFVGPF 203
++ F +GNILSCK+ T S+ GF+ F+NE SAK I K N LL ++ G
Sbjct: 207 YNFFKAYGNILSCKLNT-----SKNIGFIFFENESSAKEVISKFNANELLYGYKINCGVH 261
Query: 204 LRKQER-------------ESTADK-----------TRFNNVYVKNLSETTTEDDLKKIF 239
+ K R ES + + T ++ VKNL + ++ ++ IF
Sbjct: 262 IDKSIRKNLGTEKQKSASSESCSHRLTPICRPNEHSTERKSILVKNLPKEISDYEISSIF 321
Query: 240 GEFGIITST 248
G FG I ST
Sbjct: 322 GNFGSIEST 330
>gi|297733643|emb|CBI14890.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 65/74 (87%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RALD LNFTPLNGKP+RIMYS+RDP+IRKSG NIFIKNLDK ID+KALHDTFS F
Sbjct: 277 QDAARALDVLNFTPLNGKPLRIMYSHRDPSIRKSGTENIFIKNLDKGIDHKALHDTFSAF 336
Query: 152 GNILSCKVATDSLG 165
GNILSCK ATD+ G
Sbjct: 337 GNILSCKEATDASG 350
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+P DAAR+++ LN + K + + + + S++++ + N+++K
Sbjct: 275 NPQDAARALDVLNFTPLNGKPLRIMYSHR------------DPSIRKSGTE----NIFIK 318
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
NLD I L + FS FG I SCK D +G+
Sbjct: 319 NLDKGIDHKALHDTFSAFGNILSCKEATDASGM 351
>gi|156837090|ref|XP_001642579.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
gi|156113126|gb|EDO14721.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%)
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
ELK ++E + E K++G+NL+VKNLDDS+ D+KL+E FS FGTI S KVMR +G S+
Sbjct: 2 ELKKQYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSK 61
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL 407
GFV FST EEA++A+TE N ++V KPLYVA+AQRKE RRA+L
Sbjct: 62 NFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQL 106
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 204 LRKQERESTADK-TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
L+KQ + +K T++ N++VKNL ++ ++ L++ F FG I S VMR DGKSK
Sbjct: 3 LKKQYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKN 62
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
FGFV F P++A R++ N + K YV AQ+K R +L
Sbjct: 63 FGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQL 106
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+F+KNLD S+D++ L + FS FG I+S KV G+S+ +GFV F E A AI +
Sbjct: 22 NLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITEK 81
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
N ++ K ++V RK+ R +
Sbjct: 82 NQQIVAGKPLYVAIAQRKEVRRA 104
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD SV+D +L + F+ G ++S +V R +S +G+V ++ EAT
Sbjct: 17 KYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRT-EDGKSKNFGFVCFSTPEEAT 75
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
RA+ E N + GKP+ + + R R A + +N
Sbjct: 76 RAITEKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQARN 114
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 55/133 (41%), Gaps = 31/133 (23%)
Query: 495 PLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGML---PGPYDI---GGMPFRDAAFSQP 548
P+ M PRG + N P+ ++GVP PG Y + G P D F Q
Sbjct: 137 PMFYGVMPPRGVPF------NGPNPQMSGVPPQQFRNGPGVYGMPAQGSFPPNDQFFQQ- 189
Query: 549 MQTGALASALANASPEQQRTLLGENLYPLVDQLEHDN--AAKVTGMLLEMDQTEVLHLLE 606
+QR LGE LY V D A K+TGM+L++ EV+ LLE
Sbjct: 190 ----------------KQRQALGEELYKKVSAKTSDEEAAGKITGMILDLPPQEVMPLLE 233
Query: 607 SPEALKAKVAEAM 619
+ E + EA
Sbjct: 234 NNELFEQHFKEAF 246
>gi|432936678|ref|XP_004082225.1| PREDICTED: ELAV-like protein 1-like [Oryzias latipes]
Length = 342
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 147/314 (46%), Gaps = 50/314 (15%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG ++ GD + T+L V L S++ +L LF+ +G+V S ++ RD SL
Sbjct: 18 SNGYEDHMVGGDEPKDAKTNLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSL 77
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A RA+ LN L K I++ SY P+ N++I L K++
Sbjct: 78 GYGFVNYLNPSDAERAISTLNGLRLQSKTIKV--SYARPSSDTIKDANLYISGLPKNMTQ 135
Query: 142 KALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG---------- 190
K + D FS +G I++ +V D S G SRG F++FD A+ A+ LNG
Sbjct: 136 KDVEDMFSCYGRIINSRVLVDQSTGMSRGVAFIRFDKRSEAEEAVKSLNGQKPPGVTEPI 195
Query: 191 -------------------MLLNDKQVFVGPFLRKQERESTA-----------------D 214
+ N + F GP + +R + +
Sbjct: 196 TVKFAANPNQVKNTQIISQLYHNQSRRFGGPLHHQAQRFRFSPMSVDHMGGMGSVGVPGN 255
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAA 273
T +++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA
Sbjct: 256 STSGWCIFIYNLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 315
Query: 274 RSVEALNGKKFDDK 287
++ +LNG + DK
Sbjct: 316 MAIASLNGYRLGDK 329
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 140/317 (44%), Gaps = 43/317 (13%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAK 182
K N+ + L +S+ L FS+ G + S K+ D + G S GYGFV + N A+
Sbjct: 32 KDAKTNLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPSDAE 91
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI LNG+ L K + V + R ++D + N+Y+ L + T+ D++ +F +
Sbjct: 92 RAISTLNGLRLQSKTIKV-SYAR-----PSSDTIKDANLYISGLPKNMTQKDVEDMFSCY 145
Query: 243 GIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDKEWY 290
G I ++ V+ D + G S+ F+ FD +A +V++LNG+K F
Sbjct: 146 GRIINSRVLVDQSTGMSRGVAFIRFDKRSEAEEAVKSLNGQKPPGVTEPITVKFAANPNQ 205
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVK 327
V Q + +F L A +F G +++
Sbjct: 206 VKNTQIISQLYHNQSRRFGGPLHHQAQRFRFSPMSVDHMGGMGSVGVPGNSTSGWCIFIY 265
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+ +NG
Sbjct: 266 NLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYR 325
Query: 387 VVSKPLYVALAQRKEER 403
+ K L V+ K +
Sbjct: 326 LGDKILQVSFKTSKGHK 342
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 291 VGKAQKKYEREM-ELKGKFEQSLKETAD-KFEGLNLYVKNLDDSISDDKLKELFSEFGTI 348
V + KY +E+ E+ +E + + K NL V L S+S D+L+ LFS G +
Sbjct: 3 VRRGHNKYLKEVYEMSNGYEDHMVGGDEPKDAKTNLIVNYLPQSMSQDELRSLFSSIGEV 62
Query: 349 TSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
S K++RD G S G GFV + +A +A++ +NG + SK + V+ A+
Sbjct: 63 ESAKLIRDKVAGHSLGYGFVNYLNPSDAERAISTLNGLRLQSKTIKVSYAR 113
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L ++S L+ +F G V +V+V RD +T + G+G+V EA A+ L
Sbjct: 262 IFIYNLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 321
Query: 102 NFTPLNGKPIRIMY 115
N L K +++ +
Sbjct: 322 NGYRLGDKILQVSF 335
>gi|440293224|gb|ELP86367.1| polyadenylate-binding protein, putative [Entamoeba invadens IP1]
Length = 519
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 178/356 (50%), Gaps = 30/356 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+++V L +V +S LY + QV SV V R+ YVN N A +A+
Sbjct: 16 TIFVSSLSKNVTESLLYKEISAKFESQVASVHVSRN--EHYDTAIAYVNMNTHEAAKKAI 73
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ +N ++GK + + +S +D R N+F+KN+ K++ K + D F TFG I+S K
Sbjct: 74 ETMNGALIDGKTVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVK 133
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
++ + G S G+G+V++ E+A A++ N + K + K E+++ KT
Sbjct: 134 LSVNENGASNGFGYVKYRTIEAALKAVE--NAAEIKAKIGEDNFIVAKFEKQTKNKKT-- 189
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITST-----AVMRDADGKS-KCFGFVNFDDPDDA 272
N+YV N+ ++ E+ K F FG + V+ D K GFV+F++ +DA
Sbjct: 190 -NLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFACDDKHPTAMGFVDFENEEDA 248
Query: 273 ARSVEA----LNGKKFDDKEWYVGKAQKK---YEREMELKGKFEQSLKETADKFEGLNLY 325
+++ A + G+ ++Y+ ++++ ++ +E+K + K++ N+Y
Sbjct: 249 QKALTAPKNNVLGQGEIKVDYYMSRSERSRVWLQKSLEIKSNIQ-------GKYKDFNMY 301
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
+ L + SD +++ F++ G I S +V + + FV F++ E +KA+T+
Sbjct: 302 INTLKEPTSDAEIRSAFADCGEIYSVRV-KYYEKVPTSIAFVCFTSQEAFNKAMTK 356
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R T+L+V ++ +V+ ++ D+F G+++SV++ + S G+GYV Y A
Sbjct: 98 RTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVN-ENGASNGFGYVKYRTIEAA 156
Query: 95 TRALDE-LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG- 152
+A++ G+ I+ + T K+ N+++ N+DKS++ + F TFG
Sbjct: 157 LKAVENAAEIKAKIGEDNFIVAKFEKQT--KNKKTNLYVSNIDKSVNEEQFVKYFETFGP 214
Query: 153 ------NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
N A D GFV F+NEE A+ A+ +L ++ V ++ +
Sbjct: 215 LRKNPDNKFQVLFACDD-KHPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIKVDYYMSR 273
Query: 207 QER------------ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
ER + K + N+Y+ L E T++ +++ F + G I S V
Sbjct: 274 SERSRVWLQKSLEIKSNIQGKYKDFNMYINTLKEPTSDAEIRSAFADCGEIYSVRV 329
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
+++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+K
Sbjct: 7 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATK 65
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARL 407
A+TEMNG++V +KPLYVALAQRKEER+A L
Sbjct: 66 AVTEMNGRIVATKPLYVALAQRKEERQAHL 95
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 216 TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FGFV F P++A
Sbjct: 6 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEAT 64
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 65 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 103
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 12 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 70
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER++ N Y++ ++
Sbjct: 71 NGRIVATKPLYVALAQRKEERQA-----HLTNQYMQRMA 104
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 7 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 64
Query: 96 RALDELNFTPLNGKPIRIMYSYRD 119
+A+ E+N + KP+ + + R
Sbjct: 65 KAVTEMNGRIVATKPLYVALAQRK 88
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LY+G+LD V+D L++LF Q G V +V V RD T GYG+V + +A AL
Sbjct: 29 ATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALK 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N L GK +R+ S +D GA NIF+ NLD +D K ++DTFSTFGNIL+ K+
Sbjct: 89 LMNMVKLYGKSLRLNKSAQDRRNFDVGA-NIFLGNLDPDVDEKTIYDTFSTFGNILTAKI 147
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
D G SRG+GFV FD E++ +A+ +NG + ++ + V +K R
Sbjct: 148 MRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 108/213 (50%), Gaps = 19/213 (8%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+Y+ NL +D L ++F + G + + +V RD G + +GFV F + DA +++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALKLM 90
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K K + K+ + R ++ G N+++ NLD + + +
Sbjct: 91 NMVKLYGKSLRLNKSAQD-RRNFDV----------------GANIFLGNLDPDVDEKTIY 133
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I + K+MRDP GISRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 134 DTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAY 193
Query: 399 RKEERRARLQFSQMRPPVGPRMPMYPPVAPGLG 431
+K+ R R + R R + P AP G
Sbjct: 194 KKDTRGERHGSAAERLLAANRPQIINPNAPATG 226
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188
++I NLD +D+ L + F G + + V D L G +GYGFV+F NE A A+ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALKLM 90
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFN---NVYVKNLSETTTEDDLKKIFGEFGII 245
N + L K + + +S D+ F+ N+++ NL E + F FG I
Sbjct: 91 NMVKLYGKSLRL--------NKSAQDRRNFDVGANIFLGNLDPDVDEKTIYDTFSTFGNI 142
Query: 246 TSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+ +MRD + G S+ FGFV+FD + + ++ A+NG+ ++ +V A KK R
Sbjct: 143 LTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFS 370
+ + ++ + LY+ NLD + DD L ELF + G + + V RD G +G GFV F+
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFT 78
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+A AL MN + K L L + ++RR
Sbjct: 79 NEVDADYALKLMNMVKLYGKSLR--LNKSAQDRR 110
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 152/322 (47%), Gaps = 56/322 (17%)
Query: 16 AQPSPATNGIAN--NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
A P + GI N NG D++ T+L V L ++ + LF +G++ S ++ R
Sbjct: 13 ASNGPGSVGILNGTNGAADDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR 68
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D T +SLGYG+VNY ++A +A++ LN L K I++ SY P+ N+++
Sbjct: 69 DKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVS 126
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG-- 190
+L K+++ K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 127 SLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 186
Query: 191 -----------------------MLLNDKQV----FVGPFLRKQER-------------- 209
+L + Q + GP + +R
Sbjct: 187 PLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNL 246
Query: 210 ---ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVN 265
T T ++V NLS E L ++FG FG +T+ V+RD K K FGFV
Sbjct: 247 AGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 306
Query: 266 FDDPDDAARSVEALNGKKFDDK 287
+ D+AA ++ +LNG + D+
Sbjct: 307 MTNYDEAAMAIASLNGYRLGDR 328
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 45/313 (14%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 95
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV +L +T + +++++F ++G IIT
Sbjct: 96 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSSLPKTMNQKEMEQLFSQYGRIIT 149
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK------------FDDKEWYVGKA 294
S ++ G S+ GF+ FD +A +++ LNG+K ++ G+A
Sbjct: 150 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 209
Query: 295 QKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVKNLDD 331
+ + + ++ L +F G ++V NL
Sbjct: 210 LLTHLYQTTAR-RYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSP 268
Query: 332 SISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+ L +LF FG +T+ KV+RD +G GFV + +EA+ A+ +NG + +
Sbjct: 269 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 328
Query: 391 PLYVALAQRKEER 403
L V+ K+ +
Sbjct: 329 VLQVSFKTSKQHK 341
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 107/211 (50%), Gaps = 23/211 (10%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
AD ++ N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+D
Sbjct: 30 ADDSK-TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPND 88
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ LNG K K V A + ++ NLYV +L
Sbjct: 89 ADKAINTLNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSSLPK 130
Query: 332 SISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVV 388
+++ ++++LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ +
Sbjct: 131 TMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGA 190
Query: 389 SKPLYVALAQRKEERRARLQFSQMRPPVGPR 419
S+P+ V A ++ + + + R
Sbjct: 191 SEPITVKFANNPSQKTGQALLTHLYQTTARR 221
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++V +L ++S L+ LF G V +V+V RD +T + G+G+V EA A+ L
Sbjct: 261 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 320
Query: 102 NFTPLNGKPIRIMY 115
N L + +++ +
Sbjct: 321 NGYRLGDRVLQVSF 334
>gi|47026849|gb|AAT08650.1| poly(A)-binding protein [Hyacinthus orientalis]
Length = 126
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 74/85 (87%)
Query: 563 PEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622
PE QR +LGENLYPLV QLE ++AAKVTGMLLEMDQTEVLHLLESPE+L+ KVAEAMEVL
Sbjct: 41 PEHQRMMLGENLYPLVAQLETEHAAKVTGMLLEMDQTEVLHLLESPESLRGKVAEAMEVL 100
Query: 623 RNVAQQQATGPSPTDRVASLSLNDN 647
RNVAQQQ + ++++SL+LND+
Sbjct: 101 RNVAQQQHASNALHNQLSSLALNDD 125
>gi|94733636|emb|CAK04114.1| novel protein (zgc:56258) [Danio rerio]
Length = 865
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 146/313 (46%), Gaps = 46/313 (14%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
A +F++ L ++ N+ L + FS G + +C V D + RG+G+V F E+ A+ A+
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALK 62
Query: 187 KLNGMLLNDKQVFV-------------------------------GPFLRKQERESTADK 215
++ L +D+++FV G +E S K
Sbjct: 63 EVK--LYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSPTKK 120
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ ++NLS +D+LK+IF +FG + T + DGK K F FV F +A ++
Sbjct: 121 KENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKA 180
Query: 276 VEALNGKKFDDK----EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN-------L 324
A+N K D+ +W + + E K E++ + +KF+G+ L
Sbjct: 181 RAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKSRL 238
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
++NL +D LK++FSEFGT+ K+ P+G RG FV F EA KALT MNG
Sbjct: 239 IIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNG 298
Query: 385 KMVVSKPLYVALA 397
K + + + V A
Sbjct: 299 KKIKDRQVAVDWA 311
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 130/313 (41%), Gaps = 59/313 (18%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +L+V L + ++ L ++F+++G + + V D ++ G+GYV ++ +A RAL
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCD-KEKKCRGFGYVTFSMEDDAQRAL 61
Query: 99 DELNF--------------------------------TPLNGKPIRIMYSYRDPT-IRKS 125
E+ T + K + P+ +K
Sbjct: 62 KEVKLYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSPTKKK 121
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G + I+NL ++ L FS FG +L ++ G+ +G+ FVQF A+ A
Sbjct: 122 ENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKAR 181
Query: 186 DKLNGMLLNDKQVFVGPFLRKQER------------ESTADKTRFNNV---------YVK 224
+N + D+ V V E E T +F + ++
Sbjct: 182 AAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIR 241
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NLS EDDLK+IF EFG + + DGK + F FV F +A +++ A+NGKK
Sbjct: 242 NLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKI 301
Query: 285 DDKE----WYVGK 293
D++ W + K
Sbjct: 302 KDRQVAVDWAIAK 314
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 130 IFIKNLDKSID-NKALHDTFSTFG----NILSCKVATDS-------LGQSRGYGFVQFDN 177
+ + NL KS+D NK + S G I+ C++ D +GQS GYGFV+F
Sbjct: 593 LCVHNLPKSVDKNKLFNLCVSAAGGKGVRIIECRIMYDKKPVKGQVMGQSLGYGFVEFQE 652
Query: 178 EESAKSAIDKLN 189
E A A+ LN
Sbjct: 653 HEHAIQALRHLN 664
>gi|294928940|ref|XP_002779243.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239888268|gb|EER11038.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 85/126 (67%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YV +AQ K ER LK +F +F G+NLYVKNL +++ D++LK +F FGTIT
Sbjct: 51 YVARAQSKAERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTIT 110
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQF 409
S KVM D G+SRG GFV FST EEA+KA+T+M+ K++ KPLYV + +++E+R RLQ
Sbjct: 111 SVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQ 170
Query: 410 SQMRPP 415
PP
Sbjct: 171 RYRAPP 176
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKNL ET +++LK++F FG ITS VM D G S+ FGFV F ++A ++V +
Sbjct: 84 NLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDM 143
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ K K YVG +K+ +R L+ ++
Sbjct: 144 HLKLIGGKPLYVGMHEKREQRLERLQQRY 172
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G N+++KNL +++D+ L F FG I S KV TD G SRG+GFV F E A A+
Sbjct: 81 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 140
Query: 186 DKLNGMLLNDKQVFVGPFLRKQER 209
++ L+ K ++VG ++++R
Sbjct: 141 TDMHLKLIGGKPLYVGMHEKREQR 164
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F +LYV +L +V+D++L +F G + SV+V D S G+G+V ++ EAT
Sbjct: 79 RFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTD-DKGVSRGFGFVCFSTHEEAT 137
Query: 96 RALDELNFTPLNGKPIRI-MYSYRDPTIRK 124
+A+ +++ + GKP+ + M+ R+ + +
Sbjct: 138 KAVTDMHLKLIGGKPLYVGMHEKREQRLER 167
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 6/192 (3%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
AN G A + + YVG+LD + + L++LF Q G VV+V V +D T + GYG+
Sbjct: 11 ANLLGQHAAERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGF 70
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
V + + +A A+ LN L GKPIR+ + +D GA N+FI NLD +D K L+
Sbjct: 71 VEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLY 129
Query: 146 DTFSTFGNILS-CKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
DTFS FG I++ K+ D G SRG+GF+ +D+ E++ SAI+ +NG L ++Q+ V
Sbjct: 130 DTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 189
Query: 204 LRKQ---EREST 212
+K ER T
Sbjct: 190 YKKDTKGERHGT 201
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 46/293 (15%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ A++ + YV NL E+ L ++F + G + + V +D + + +GFV F
Sbjct: 16 QHAAERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA +++ LN K K V KA + K++ D G NL++ N
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQD---------------KKSLDV--GANLFIGN 118
Query: 329 LDDSISDDKLKELFSEFGTI-TSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKM 386
LD + + L + FS FG I T+ K+MRDP G SRG GF+++ + E + A+ MNG+
Sbjct: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQY 178
Query: 387 VVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPI---- 442
+ ++ + V+ A +K+ + R R + P + GPP
Sbjct: 179 LCNRQITVSYAYKKDTKGERHGTPAER-----VLAASNPTTQKSRPHTLFASGPPTLPSA 233
Query: 443 --------IPPQPGF-GYQQQLVPGMRP-----NYFVPMVQPGQ---QNQRPG 478
+PP+P G +P +RP F PM PGQ Q+PG
Sbjct: 234 PQANGVAPVPPRPFVNGVAPAAIPTLRPPPPQAAAFQPMPVPGQPAWHQQQPG 286
>gi|403339745|gb|EJY69134.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 593
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 142/554 (25%), Positives = 249/554 (44%), Gaps = 62/554 (11%)
Query: 100 ELNFTPLNGKPIRIM---------YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS- 149
E+ + +NGKP R + + + K+ + +KNLDKSI ++ L + F+
Sbjct: 69 EMKYFEINGKPCRALPNLFQLKKVIGTLENEMEKTNF--LLVKNLDKSITSQQLDEIFAK 126
Query: 150 TFGN--ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FG+ +LS KV+ +S SRGYGFVQF + A+ A+ K + N + P R++
Sbjct: 127 VFGDDAVLSAKVSINSDYSSRGYGFVQFACPQLAEQALAKASE--FNFEISTHQPMNREE 184
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR---DADGKSKCFGFV 264
R++ FNN+Y+KN ++ +++IFG++G I ST VM + F FV
Sbjct: 185 LRKT------FNNIYIKNFPSNWNKEKIEEIFGQYGTIKSTVVMMGKVQGTDQEAPFAFV 238
Query: 265 NFDDPDD-------AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETAD 317
++DPD+ A ++ N K++D + V +A K RE E K + + LK +
Sbjct: 239 CYEDPDNKEYGPKCAQNAITQENDKEYDGFKLQVKEALPKSLREQE-KQREQNRLKNSKK 297
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
+ NLYVKN ++ ++++LK F ++G I K++ FV + E A+
Sbjct: 298 R---CNLYVKNFPENTNEEQLKAYFEKYGEIERIKLIHKEGAAV--YAFVCYKNPESATY 352
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYG 437
A + + + K L++ ++KE R+ + + ++ R P A +
Sbjct: 353 AKQQSQTQTLNGKQLFLNFYEQKEVRKIQQEDARDRTDFQNLRKQSPTSALNID------ 406
Query: 438 QGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
++ F Q L+ ++ Q QR GG GP QQ
Sbjct: 407 ----MLNRPETFQLLQYLMITIQR---QQQNQRYNNPQRQGGNMQQRGPRQQYNNQGGYQ 459
Query: 498 Q-PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIG------GMPFRDAAFSQPMQ 550
Q + LP+G++ P PV +P ++P + +P ++Q
Sbjct: 460 QRNQQLPQGQMPPMNQQMRQPQQPVI-MPSQVMPALAQVAPSAMNQNLPPHILTYNQNGM 518
Query: 551 TGALASALANASPEQQRTLLGENLYPLVDQLE-HDNAAKVTGMLLEMDQTEVLHLLESPE 609
+ L +A ++ +GE +Y V++L D A K+TGML+++ E+ +
Sbjct: 519 SKIF--PLVSALNPNYKSQVGEFIYEHVEELAGEDLAPKITGMLIDLPIVEIQAYVTDFM 576
Query: 610 ALKAKVAEAMEVLR 623
LK K+ EA +L+
Sbjct: 577 KLKIKINEASTLLK 590
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 6/192 (3%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
AN G A + + YVG+LD +++ L++LF Q G VV+V V +D T + GYG+
Sbjct: 11 ANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGF 70
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
V + + +A A+ LN L GKPIR+ + +D GA N+FI NLD +D K L+
Sbjct: 71 VEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLY 129
Query: 146 DTFSTFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
DTFS FG I++ K+ D G SRG+GF+ +D+ E++ SAI+ +NG L ++Q+ V
Sbjct: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 189
Query: 204 LRKQ---EREST 212
+K ER T
Sbjct: 190 YKKDTKGERHGT 201
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 131/298 (43%), Gaps = 56/298 (18%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ A++ + YV NL +E+ L ++F + G + + V +D + + +GFV F
Sbjct: 16 QHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA +++ LN K K V KA + K++ D G NL++ N
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQD---------------KKSLDV--GANLFIGN 118
Query: 329 LDDSISDDKLKELFSEFGTI-TSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
LD + + L + FS FG I T+ K+MRDP+ G SRG GF+++ + E + A+ MNG+
Sbjct: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQY 178
Query: 387 VVSKPLYVALAQRKEERRARLQFSQMR---------------------PPVGPRMPMYPP 425
+ ++ + V+ A +K+ + R R PP P +P
Sbjct: 179 LCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFASGPPTLPSVPQANG 238
Query: 426 VAPGLGQQLFYGQGPPII-----PPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPG 478
VAP + G PP I PP +Q VPG QP Q+PG
Sbjct: 239 VAPVPPRPFANGVAPPAIPALRPPPPQAAAFQPMPVPG----------QPTWHQQQPG 286
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 78/90 (86%), Gaps = 1/90 (1%)
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
+++G+NLY+KNLDD+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+K
Sbjct: 1 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATK 59
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARL 407
A+TEMNG++V SKPLYVALAQRKEER+A L
Sbjct: 60 AVTEMNGRIVGSKPLYVALAQRKEERKAHL 89
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FGFV F P++A ++V +
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 64
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 65 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 97
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 54/69 (78%)
Query: 555 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 614
AS LA A P++Q+ +LGE L+PL+ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 283 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 342
Query: 615 VAEAMEVLR 623
V EA VL+
Sbjct: 343 VDEAAAVLQ 351
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 64
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER K N Y++ ++
Sbjct: 65 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 98
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 1 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 58
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 59 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 97
>gi|209155462|gb|ACI33963.1| ELAV-like protein 1 [Salmo salar]
Length = 342
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 148/314 (47%), Gaps = 50/314 (15%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG ++ G GD T+L V L S++ +L LF+ +G+V S ++ RD SL
Sbjct: 18 SNGYEDHMGGGDEVTDAKTNLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSL 77
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A RA++ LN L K I++ SY P+ N++I L K++
Sbjct: 78 GYGFVNYLTPSDAERAINTLNGLRLQSKTIKV--SYARPSSDTIKDANLYISGLPKTMTQ 135
Query: 142 KALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG---------- 190
K + D F+ +G I++ +V D + G SRG F++FD A+ AI LNG
Sbjct: 136 KDVEDMFARYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGSAEPI 195
Query: 191 -------------------MLLNDKQVFVGPFLRKQERESTA-----------------D 214
+ N + F GP + +R + +
Sbjct: 196 TVKFAASPNQAKNTQLISQLYHNQGRRFGGPVHHQAQRFRFSPMSVDHMSGMSGVSLPGN 255
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAA 273
T +++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA
Sbjct: 256 ATSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 315
Query: 274 RSVEALNGKKFDDK 287
++ +LNG + DK
Sbjct: 316 MAIGSLNGYRLGDK 329
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 138/312 (44%), Gaps = 43/312 (13%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +S+ L FS+ G + S K+ D + G S GYGFV + A+ AI+
Sbjct: 37 NLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLTPSDAERAINT 96
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LNG+ L K + V + R ++D + N+Y+ L +T T+ D++ +F +G I +
Sbjct: 97 LNGLRLQSKTIKV-SYAR-----PSSDTIKDANLYISGLPKTMTQKDVEDMFARYGRIIN 150
Query: 248 TAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDKEWYVGKAQ 295
+ V+ D A G S+ F+ FD +A +++ LNG+K F Q
Sbjct: 151 SRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGSAEPITVKFAASPNQAKNTQ 210
Query: 296 KKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVKNLDDS 332
+ +F + A +F G +++ NL
Sbjct: 211 LISQLYHNQGRRFGGPVHHQAQRFRFSPMSVDHMSGMSGVSLPGNATSGWCIFIYNLGQD 270
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ L ++F FG +T+ KV+RD N +G GFV + EEA+ A+ +NG + K
Sbjct: 271 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIGSLNGYRLGDKI 330
Query: 392 LYVALAQRKEER 403
L V+ K +
Sbjct: 331 LQVSFKTSKGHK 342
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 25/215 (11%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
E T KT N+ V L ++ ++D+L+ +F G + S ++RD G S +GFVN+
Sbjct: 30 EVTDAKT---NLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLT 86
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
P DA R++ LNG + K V A + ++D + NLY+
Sbjct: 87 PSDAERAINTLNGLRLQSKTIKVSYA------------------RPSSDTIKDANLYISG 128
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKM- 386
L +++ ++++F+ +G I + +V+ D +G+SRG F+ F EA A+ ++NG+
Sbjct: 129 LPKTMTQKDVEDMFARYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKP 188
Query: 387 -VVSKPLYVALAQRKEERRARLQFSQMRPPVGPRM 420
++P+ V A + + SQ+ G R
Sbjct: 189 PGSAEPITVKFAASPNQAKNTQLISQLYHNQGRRF 223
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L ++ L+ +F G V +V+V RD +T + G+G+V EA A+ L
Sbjct: 262 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIGSL 321
Query: 102 NFTPLNGKPIRIMY 115
N L K +++ +
Sbjct: 322 NGYRLGDKILQVSF 335
>gi|345567290|gb|EGX50224.1| hypothetical protein AOL_s00076g299 [Arthrobotrys oligospora ATCC
24927]
Length = 385
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 107/195 (54%), Gaps = 10/195 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++Y+G+LD V D+ +++L Q G++ +V + +D T+ G+G+V + + +A A
Sbjct: 12 ATVYIGNLDERVTDALVWELMLQAGRISNVHLPKDRVTQTHQGFGFVEFVSEEDAEYAAR 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CK 158
+N L GKPIR+ + D +FI NLD +D K L+DTF TFG I + K
Sbjct: 72 IMNQIRLYGKPIRVNKASADKQKTVEVGAELFIGNLDSMVDEKTLYDTFMTFGTITAPPK 131
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK---------QER 209
+A D G SRG+GFVQFDN ES+ AID + G L +K++ V +K Q
Sbjct: 132 IARDEAGISRGFGFVQFDNFESSDKAIDAMQGQYLMNKEISVSYAFKKDGKGERHGDQAE 191
Query: 210 ESTADKTRFNNVYVK 224
A + R NNV V+
Sbjct: 192 RLLASQARKNNVQVQ 206
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 18/189 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEA 278
VY+ NL E T+ + ++ + G I++ + +D ++ + FGFV F +DA +
Sbjct: 13 TVYIGNLDERVTDALVWELMLQAGRISNVHLPKDRVTQTHQGFGFVEFVSEEDAEYAARI 72
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + K V KA ++ +E+ G L++ NLD + + L
Sbjct: 73 MNQIRLYGKPIRVNKASADKQKTVEV----------------GAELFIGNLDSMVDEKTL 116
Query: 339 KELFSEFGTITSC-KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+ F FGTIT+ K+ RD GISRG GFV F E + KA+ M G+ +++K + V+ A
Sbjct: 117 YDTFMTFGTITAPPKIARDEAGISRGFGFVQFDNFESSDKAIDAMQGQYLMNKEISVSYA 176
Query: 398 QRKEERRAR 406
+K+ + R
Sbjct: 177 FKKDGKGER 185
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNYNAAHEATR 96
V L++G+LD V++ LYD F G + + ++ RD S G+G+V ++ + +
Sbjct: 98 VGAELFIGNLDSMVDEKTLYDTFMTFGTITAPPKIARD-EAGISRGFGFVQFDNFESSDK 156
Query: 97 ALDELNFTPLNGKPIRIMYSYR 118
A+D + L K I + Y+++
Sbjct: 157 AIDAMQGQYLMNKEISVSYAFK 178
>gi|41053419|ref|NP_956615.1| RNA-binding protein 28 [Danio rerio]
gi|30353878|gb|AAH51781.1| Zgc:56258 [Danio rerio]
Length = 864
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 147/313 (46%), Gaps = 46/313 (14%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
A +F++ L ++ N+ L + FS G + +C V D + RG+G+V F E+ A+ A+
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALK 62
Query: 187 KLNGMLLNDKQVFV-------------------------------GPFLRKQERESTADK 215
++ L +D+++FV G ++ S K
Sbjct: 63 EVK--LYDDQKIFVTVAKKKLDDRKRKKNAKTNKDSGDTEESQKSGETKNTEKIPSPTKK 120
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ + ++NLS +D+LK+IF +FG + T + DGK K F FV F +A ++
Sbjct: 121 KENSWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKA 180
Query: 276 VEALNGKKFDDK----EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN-------L 324
A+N K D+ +W + + E K E++ + +KF+G+ L
Sbjct: 181 RAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKSRL 238
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
++NL +D LK++FSEFGT+ K+ P+G RG FV F EA KALT MNG
Sbjct: 239 IIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNG 298
Query: 385 KMVVSKPLYVALA 397
K + + + V A
Sbjct: 299 KKIKDRQVAVDWA 311
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 130/313 (41%), Gaps = 59/313 (18%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +L+V L + ++ L ++F+++G + + V D ++ G+GYV ++ +A RAL
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCD-KEKKCRGFGYVTFSMEDDAQRAL 61
Query: 99 DELNF--------------------------------TPLNGKPIRIMYSYRDPT-IRKS 125
E+ T + K + + P+ +K
Sbjct: 62 KEVKLYDDQKIFVTVAKKKLDDRKRKKNAKTNKDSGDTEESQKSGETKNTEKIPSPTKKK 121
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
+ I+NL ++ L FS FG +L ++ G+ +G+ FVQF A+ A
Sbjct: 122 ENSWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKAR 181
Query: 186 DKLNGMLLNDKQVFVGPFLRKQER------------ESTADKTRFNNV---------YVK 224
+N + D+ V V E E T +F + ++
Sbjct: 182 AAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIR 241
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NLS EDDLK+IF EFG + + DGK + F FV F +A +++ A+NGKK
Sbjct: 242 NLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKI 301
Query: 285 DDKE----WYVGK 293
D++ W + K
Sbjct: 302 KDRQVAVDWAIAK 314
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 130 IFIKNLDKSID-NKALHDTFSTFG----NILSCKVATDS-------LGQSRGYGFVQFDN 177
+ + NL KS+D NK + S G I+ C++ D +GQS GYGFV+F
Sbjct: 592 LCVHNLPKSVDKNKLFNLCVSAAGGKGVRIIECRIMYDKKPVKGQVMGQSLGYGFVEFQE 651
Query: 178 EESAKSAIDKLN 189
E A A+ LN
Sbjct: 652 HEHAIQALRHLN 663
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LY+G+LD V+D L++LF Q G V +V V RD T GYG+V + +A AL
Sbjct: 29 ATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALK 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N L GK +R+ S +D GA N+F+ NLD +D K ++DTFS FGNI+S K+
Sbjct: 89 LMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVDEKTIYDTFSAFGNIISAKI 147
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
D G SRG+GFV FD E++ +A+ +NG + ++ + V +K R
Sbjct: 148 MRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 19/189 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
+Y+ NL +D L ++F + G + + +V RD G + +GFV F + DA +++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K K + K+ + R ++ G N+++ NLD + + +
Sbjct: 90 MNMVKLYGKALRLNKSAQD-RRNFDV----------------GANVFLGNLDPDVDEKTI 132
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+ FS FG I S K+MRDP G+SRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 398 QRKEERRAR 406
+K+ R R
Sbjct: 193 YKKDTRGER 201
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 13/177 (7%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
++I NLD +D+ L + F G + + V D L G +GYGFV+F NE A A+
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFN---NVYVKNLSETTTEDDLKKIFGEFGI 244
+N + L K + + +S D+ F+ NV++ NL E + F FG
Sbjct: 90 MNMVKLYGKALRL--------NKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGN 141
Query: 245 ITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
I S +MRD + G S+ FGFV+FD + + ++ A+NG+ ++ +V A KK R
Sbjct: 142 IISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 33 DARQF-VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
D R F V ++++G+LD V++ +YD F+ G ++S ++ RD T S G+G+V+++
Sbjct: 108 DRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTF 167
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPT 121
+ AL +N + +PI + Y+Y+ T
Sbjct: 168 EASDAALAAMNGQFICNRPIHVSYAYKKDT 197
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFS 370
+ + ++ + LY+ NLD + DD L ELF + G + + V RD G +G GFV F
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+A AL MN + K L L + ++RR
Sbjct: 79 NEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LY+G+LD V+D L++LF Q G V +V V RD T GYG+V + +A AL
Sbjct: 29 ATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALK 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N L GK +R+ S +D GA N+F+ NLD +D K ++DTFS FGNI+S K+
Sbjct: 89 LMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVDEKTIYDTFSAFGNIISAKI 147
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
D G SRG+GFV FD E++ +A+ +NG + ++ + V +K R
Sbjct: 148 MRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 19/189 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
+Y+ NL +D L ++F + G + + +V RD G + +GFV F + DA +++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K K + K+ + R ++ G N+++ NLD + + +
Sbjct: 90 MNMVKLYGKALRLNKSAQD-RRNFDV----------------GANVFLGNLDPDVDEKTI 132
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+ FS FG I S K+MRDP G+SRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 398 QRKEERRAR 406
+K+ R R
Sbjct: 193 YKKDTRGER 201
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 13/177 (7%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
++I NLD +D+ L + F G + + V D L G +GYGFV+F NE A A+
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFN---NVYVKNLSETTTEDDLKKIFGEFGI 244
+N + L K + + +S D+ F+ NV++ NL E + F FG
Sbjct: 90 MNMVKLYGKALRL--------NKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGN 141
Query: 245 ITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
I S +MRD + G S+ FGFV+FD + + ++ A+NG+ ++ +V A KK R
Sbjct: 142 IISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 33 DARQF-VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
D R F V ++++G+LD V++ +YD F+ G ++S ++ RD T S G+G+V+++
Sbjct: 108 DRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTF 167
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPT 121
+ AL +N + +PI + Y+Y+ T
Sbjct: 168 EASDAALAAMNGQFICNRPIHVSYAYKKDT 197
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFS 370
+ + ++ + LY+ NLD + DD L ELF + G + + V RD G +G GFV F
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+A AL MN + K L L + ++RR
Sbjct: 79 NEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LY+G+LD V+D L++LF Q G V +V V RD T GYG+V + +A AL
Sbjct: 29 ATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALK 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N L GK +R+ S +D GA N+F+ NLD +D K ++DTFS FGNI+S K+
Sbjct: 89 LMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVDEKTIYDTFSAFGNIISAKI 147
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
D G SRG+GFV FD E++ +A+ +NG + ++ + V +K R
Sbjct: 148 MRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 19/189 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
+Y+ NL +D L ++F + G + + +V RD G + +GFV F + DA +++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K K + K+ + R ++ G N+++ NLD + + +
Sbjct: 90 MNMVKLYGKALRLNKSAQD-RRNFDV----------------GANVFLGNLDPDVDEKTI 132
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+ FS FG I S K+MRDP G+SRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 398 QRKEERRAR 406
+K+ R R
Sbjct: 193 YKKDTRGER 201
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 13/177 (7%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
++I NLD +D+ L + F G + + V D L G +GYGFV+F NE A A+
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFN---NVYVKNLSETTTEDDLKKIFGEFGI 244
+N + L K + + +S D+ F+ NV++ NL E + F FG
Sbjct: 90 MNMVKLYGKALRL--------NKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGN 141
Query: 245 ITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
I S +MRD + G S+ FGFV+FD + + ++ A+NG+ ++ +V A KK R
Sbjct: 142 IISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 33 DARQF-VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
D R F V ++++G+LD V++ +YD F+ G ++S ++ RD T S G+G+V+++
Sbjct: 108 DRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTF 167
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPT 121
+ AL +N + +PI + Y+Y+ T
Sbjct: 168 EASDAALAAMNGQFICNRPIHVSYAYKKDT 197
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFS 370
+ + ++ + LY+ NLD + DD L ELF + G + + V RD G +G GFV F
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+A AL MN + K L L + ++RR
Sbjct: 79 NEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 151/322 (46%), Gaps = 56/322 (17%)
Query: 16 AQPSPATNGIAN--NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
A P GI N NG D++ T+L V L ++ + LF +G++ S ++ R
Sbjct: 12 ANNGPGCVGILNGTNGEADDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR 67
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D T +SLGYG+VNY ++A +A++ LN L K I++ SY P+ N+++
Sbjct: 68 DKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVS 125
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG-- 190
+L K+++ K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 126 SLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 185
Query: 191 -----------------------MLLNDKQV----FVGPFLRKQER-------------- 209
+L + Q + GP + +R
Sbjct: 186 PLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNL 245
Query: 210 ---ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVN 265
T T ++V NLS E L ++FG FG +T+ V+RD K K FGFV
Sbjct: 246 AGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 305
Query: 266 FDDPDDAARSVEALNGKKFDDK 287
+ D+AA ++ +LNG + D+
Sbjct: 306 MTNYDEAAMAIASLNGYRLGDR 327
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 45/313 (14%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 94
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV +L +T + +++++F ++G IIT
Sbjct: 95 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSSLPKTMNQKEMEQLFSQYGRIIT 148
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK------------FDDKEWYVGKA 294
S ++ G S+ GF+ FD +A +++ LNG+K ++ G+A
Sbjct: 149 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 208
Query: 295 QKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVKNLDD 331
+ + + ++ L +F G ++V NL
Sbjct: 209 LLTHLYQTTAR-RYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSP 267
Query: 332 SISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+ L +LF FG +T+ KV+RD +G GFV + +EA+ A+ +NG + +
Sbjct: 268 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 327
Query: 391 PLYVALAQRKEER 403
L V+ K+ +
Sbjct: 328 VLQVSFKTSKQHK 340
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 107/211 (50%), Gaps = 23/211 (10%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
AD ++ N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+D
Sbjct: 29 ADDSK-TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPND 87
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ LNG K K V A + ++ NLYV +L
Sbjct: 88 ADKAINTLNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSSLPK 129
Query: 332 SISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVV 388
+++ ++++LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ +
Sbjct: 130 TMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGA 189
Query: 389 SKPLYVALAQRKEERRARLQFSQMRPPVGPR 419
S+P+ V A ++ + + + R
Sbjct: 190 SEPITVKFANNPSQKTGQALLTHLYQTTARR 220
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++V +L ++S L+ LF G V +V+V RD +T + G+G+V EA A+ L
Sbjct: 260 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 319
Query: 102 NFTPLNGKPIRIMY 115
N L + +++ +
Sbjct: 320 NGYRLGDRVLQVSF 333
>gi|255550690|ref|XP_002516394.1| spliceosome associated protein, putative [Ricinus communis]
gi|223544492|gb|EEF46011.1| spliceosome associated protein, putative [Ricinus communis]
Length = 376
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 6/192 (3%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
AN G A + + YVG+LD V++ L++LF Q G VV+V V +D T GYG+
Sbjct: 11 ANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGF 70
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
V + + +A A+ +N L GKPIR+ + +D GA N+FI NLD +D K LH
Sbjct: 71 VEFRSEEDADYAIKIMNMIKLFGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLH 129
Query: 146 DTFSTFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
DTFS FG I++ K+ D G SRG+GF+ +D+ +++ +AI+ +NG L ++Q+ V
Sbjct: 130 DTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLCNRQITVSYA 189
Query: 204 LRKQ---EREST 212
+K ER T
Sbjct: 190 YKKDTKGERHGT 201
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 103/200 (51%), Gaps = 20/200 (10%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ +A++ + YV NL +E+ L ++F + G + + V +D + +GFV F
Sbjct: 16 QHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA +++ +N K K V KA + K++ D G NL++ N
Sbjct: 76 EEDADYAIKIMNMIKLFGKPIRVNKASQD---------------KKSLDV--GANLFIGN 118
Query: 329 LDDSISDDKLKELFSEFGTI-TSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKM 386
LD + + L + FS FG I T+ K+MRDP G SRG GF+++ + + + A+ MNG+
Sbjct: 119 LDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQY 178
Query: 387 VVSKPLYVALAQRKEERRAR 406
+ ++ + V+ A +K+ + R
Sbjct: 179 LCNRQITVSYAYKKDTKGER 198
>gi|357460829|ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
gi|355489744|gb|AES70947.1| Splicing factor 3B subunit [Medicago truncatula]
Length = 379
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 6/192 (3%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
AN G A + + YVG+LD +++ L++LF Q G VV+V V +D T + GYG+
Sbjct: 11 ANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGF 70
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
V + + +A A+ LN L GKPIR+ + +D GA N+FI NLD +D K L+
Sbjct: 71 VEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLY 129
Query: 146 DTFSTFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
DTFS FG I++ K+ D G SRG+GF+ +D+ E++ SAI+ +NG L ++Q+ V
Sbjct: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 189
Query: 204 LRKQ---EREST 212
+K ER T
Sbjct: 190 YKKDTKGERHGT 201
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 20/200 (10%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ +A++ + YV NL +E+ L ++F + G + + V +D + + +GFV F
Sbjct: 16 QHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA +++ LN K K V KA + K++ D G NL++ N
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQD---------------KKSLDV--GANLFIGN 118
Query: 329 LDDSISDDKLKELFSEFGTI-TSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
LD + + L + FS FG I T+ K+MRDP+ G SRG GF+++ + E + A+ MNG+
Sbjct: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQY 178
Query: 387 VVSKPLYVALAQRKEERRAR 406
+ ++ + V+ A +K+ + R
Sbjct: 179 LCNRQITVSYAYKKDTKGER 198
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 100/147 (68%), Gaps = 3/147 (2%)
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK K VG AQK E++ ELK KFEQ +E +++G+NLY+KNLDD++ D+ L
Sbjct: 1 MNGKDISGKVISVGCAQKTVEQQAELKWKFEQLKQERISRYQGVNLYIKNLDDTVGDENL 60
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + +G S+G GFV FS+ EA KA+T+MNG ++ SKPLYVALA+
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSP-EAIKAVTKMNGCVMSSKPLYVALAR 118
Query: 399 RKEERRARLQFSQMRPPVGPR-MPMYP 424
R+ + A L M+ G R +P P
Sbjct: 119 RRGKGSAYLTDQDMQWVAGKRALPAGP 145
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
KQER S + + N+Y+KNL +T +++L+K F FG ITS VM + DG+SK FGFV
Sbjct: 34 KQERIS---RYQGVNLYIKNLDDTVGDENLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 89
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F P +A ++V +NG K YV A+++
Sbjct: 90 FSSP-EAIKAVTKMNGCVMSSKPLYVALARRR 120
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD ++ ++ L FS FG+I S KV + G+S+G+GFV F + E+ K A+ K+
Sbjct: 45 NLYIKNLDDTVGDENLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEAIK-AVTKM 102
Query: 189 NGMLLNDKQVFVGPFLRK 206
NG +++ K ++V R+
Sbjct: 103 NGCVMSSKPLYVALARRR 120
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +V D L F+ G + S +V L RS G+G+V +++ EA
Sbjct: 40 RYQGVNLYIKNLDDTVGDENLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP-EAI 96
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
+A+ ++N ++ KP+ + + R+ G G+ ++ + D
Sbjct: 97 KAVTKMNGCVMSSKPLYVALA------RRRGKGSAYLTDQD 131
>gi|148224170|ref|NP_001084080.1| ELAV-like protein 3 [Xenopus laevis]
gi|82245647|sp|Q91584.1|ELAV3_XENLA RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|608541|gb|AAA96944.1| ribonucleoprotein [Xenopus laevis]
Length = 348
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 158/342 (46%), Gaps = 64/342 (18%)
Query: 16 AQPSPATNGIAN--NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
A P GI N NG D++ T+L V L ++ + LF +G++ S ++ R
Sbjct: 12 ANNGPGCVGILNGTNGEADDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR 67
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D T +SLGYG+VNY ++A +A++ LN L K I++ SY P+ N+++
Sbjct: 68 DKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVS 125
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG-- 190
+L K+++ K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 126 SLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 185
Query: 191 -----------------------MLLNDKQV----FVGPFLRKQERES------------ 211
+L + Q + GP + +R S
Sbjct: 186 PLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFSPLSILPRFSPIT 245
Query: 212 ------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKS 258
T T ++V NLS E L ++FG FG +T+ V+RD K
Sbjct: 246 IDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKC 305
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG-KAQKKYE 299
K FGFV + D+AA ++ +LNG + D+ V K K+++
Sbjct: 306 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHK 347
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 50/319 (15%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 94
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV +L +T + +++++F ++G IIT
Sbjct: 95 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSSLPKTMNQKEMEQLFSQYGRIIT 148
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDK-------- 287
S ++ G S+ GF+ FD +A +++ LNG+K F +
Sbjct: 149 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 208
Query: 288 ----------EWYVGKAQKKYER--EMELKGKFEQSLKETADKFEGLNL----------Y 325
Y G + +R + + +F ++ G++L +
Sbjct: 209 LLTHLYQTTARRYTGPLHHQTQRFSPLSILPRFSPITIDSVTNLAGVSLTGPTTAGWCIF 268
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNG 384
V NL + L +LF FG +T+ KV+RD +G GFV + +EA+ A+ +NG
Sbjct: 269 VYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 328
Query: 385 KMVVSKPLYVALAQRKEER 403
+ + L V+ K+ +
Sbjct: 329 YRLGDRVLQVSFKTSKQHK 347
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 107/211 (50%), Gaps = 23/211 (10%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
AD ++ N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+D
Sbjct: 29 ADDSK-TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPND 87
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ LNG K K V A + ++ NLYV +L
Sbjct: 88 ADKAINTLNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSSLPK 129
Query: 332 SISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVV 388
+++ ++++LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ +
Sbjct: 130 TMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGA 189
Query: 389 SKPLYVALAQRKEERRARLQFSQMRPPVGPR 419
S+P+ V A ++ + + + R
Sbjct: 190 SEPITVKFANNPSQKTGQALLTHLYQTTARR 220
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 5 QVQPQAPVAVAAQPSPAT-NGIANNGGVG-DARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
Q Q +P+++ + SP T + + N GV ++V +L ++S L+ LF
Sbjct: 228 QTQRFSPLSILPRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGP 287
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
G V +V+V RD +T + G+G+V EA A+ LN L + +++ +
Sbjct: 288 FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 340
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++Y+G+LD V D +++LF Q G VV+V + +D + GYG+V + + +A A+
Sbjct: 20 TIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAIKI 79
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
++ L GKPI++ + +D ++ GA N+FI NLD ID K L++TFS FG+ILS K+
Sbjct: 80 MHMIKLYGKPIKVNKASQDKRTQEVGA-NLFIGNLDTEIDEKTLYETFSAFGHILSTKIM 138
Query: 161 TD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
+ G S+GYGFV +DN ES+ A+ +NG L K + V +K +
Sbjct: 139 RNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYAFKKDAK 188
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 21/190 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
+Y+ NL + T+D + ++F + G + + + +D G+ + +GFV F +DA +++
Sbjct: 20 TIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAIKI 79
Query: 279 LNGKKFDDKEWYVGKA-QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
++ K K V KA Q K +E+ G NL++ NLD I +
Sbjct: 80 MHMIKLYGKPIKVNKASQDKRTQEV------------------GANLFIGNLDTEIDEKT 121
Query: 338 LKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L E FS FG I S K+MR+P G+S+G GFV++ E + ALT MNG+ + +K + V
Sbjct: 122 LYETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEY 181
Query: 397 AQRKEERRAR 406
A +K+ + R
Sbjct: 182 AFKKDAKGER 191
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 7/180 (3%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNE 178
P ++ I+I NLD+ + + + + F G +++ + D + G+ +GYGFV+F +E
Sbjct: 11 PLYERNQEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSE 70
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E A AI ++ + L K + V + + + N+++ NL E L +
Sbjct: 71 EDADYAIKIMHMIKLYGKPIKVNKASQDKRTQEVG-----ANLFIGNLDTEIDEKTLYET 125
Query: 239 FGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I ST +MR+ + G SK +GFV++D+ + + ++ A+NG+ K V A KK
Sbjct: 126 FSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYAFKK 185
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q V +L++G+LD +++ LY+ F+ G ++S ++ R+ T S GYG+V+Y+ +
Sbjct: 102 QEVGANLFIGNLDTEIDEKTLYETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSD 161
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
AL +N L K IR+ Y+++
Sbjct: 162 GALTAMNGQFLGTKIIRVEYAFK 184
>gi|143346991|gb|ABO93208.1| Elav [Platynereis dumerilii]
Length = 361
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 154/328 (46%), Gaps = 67/328 (20%)
Query: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-------- 74
NG +N+ V + T+L V L ++ ++ LF+ +G+V S ++ RD
Sbjct: 25 NGGSNHSPVSPGAEDSKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSG 84
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
S+ +SLGYG+VNY +A +A++ LN L K I++ SY P+ N+++
Sbjct: 85 TSSCQSLGYGFVNYKRPEDAEKAINTLNGLRLQNKTIKV--SYARPSSESIKGANLYLSG 142
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGML- 192
L KS+ L FS+ G+I++C++ D + G S+G GF++FD A+ AI +LNG +
Sbjct: 143 LPKSMSEPELRSLFSSCGSIINCRILCDNTTGLSKGVGFIRFDQRVEAERAIKQLNGKVP 202
Query: 193 ------------------------------LNDKQVFVGPFLRKQERESTADKTRFN--- 219
L+ + F+GP R S+A +RF+
Sbjct: 203 EGATEPITVKFANAPSSNKNQLPITAMATYLSPTRRFLGPIHHPAGRFSSA--SRFSPLD 260
Query: 220 -------------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSK 259
++V NL+ T E+ L ++FG FG + S V+RD K K
Sbjct: 261 GGLMPNTLLSGNALNGAGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDFQTQKCK 320
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDK 287
FGFV + D+A ++++LNG ++
Sbjct: 321 GFGFVTMTNYDEALMAIQSLNGYTLGNR 348
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 111/219 (50%), Gaps = 30/219 (13%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-----ADGKSKC----FGFVNFDDPD 270
N+ V L +T T+++++ +F G + S ++RD + G S C +GFVN+ P+
Sbjct: 43 NLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSGTSSCQSLGYGFVNYKRPE 102
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DA +++ LNG + +K V A + +++ +G NLY+ L
Sbjct: 103 DAEKAINTLNGLRLQNKTIKVSYA------------------RPSSESIKGANLYLSGLP 144
Query: 331 DSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKM--V 387
S+S+ +L+ LFS G+I +C+++ D G+S+G GF+ F EA +A+ ++NGK+
Sbjct: 145 KSMSEPELRSLFSSCGSIINCRILCDNTTGLSKGVGFIRFDQRVEAERAIKQLNGKVPEG 204
Query: 388 VSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPV 426
++P+ V A + +L + M + P P+
Sbjct: 205 ATEPITVKFANAPSSNKNQLPITAMATYLSPTRRFLGPI 243
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 56/318 (17%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKV----ATD-----SLGQSRGYGFVQFDNEE 179
N+ + L +++ + + FS+ G + SCK+ ATD S QS GYGFV + E
Sbjct: 43 NLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSGTSSCQSLGYGFVNYKRPE 102
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ AI+ LNG+ L +K + V + R +++ + N+Y+ L ++ +E +L+ +F
Sbjct: 103 DAEKAINTLNGLRLQNKTIKVS-YARP-----SSESIKGANLYLSGLPKSMSEPELRSLF 156
Query: 240 GEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGK-----------KFDDK 287
G I + ++ D G SK GF+ FD +A R+++ LNGK KF +
Sbjct: 157 SSCGSIINCRILCDNTTGLSKGVGFIRFDQRVEAERAIKQLNGKVPEGATEPITVKFANA 216
Query: 288 -------------EWYVGKAQKKYEREMELKGKFEQS---------------LKETADKF 319
Y+ ++ G+F + L A
Sbjct: 217 PSSNKNQLPITAMATYLSPTRRFLGPIHHPAGRFSSASRFSPLDGGLMPNTLLSGNALNG 276
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKA 378
G ++V NL ++ L +LF FG + S KV+RD +G GFV + +EA A
Sbjct: 277 AGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDFQTQKCKGFGFVTMTNYDEALMA 336
Query: 379 LTEMNGKMVVSKPLYVAL 396
+ +NG + ++ L V+
Sbjct: 337 IQSLNGYTLGNRVLQVSF 354
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 7 QPQAPVAVAAQPSPATNGIANNGGV-GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ 65
P + A++ SP G+ N + G+A ++V +L ++ L+ LF G
Sbjct: 245 HPAGRFSSASRFSPLDGGLMPNTLLSGNALNGAGWCIFVYNLAPETEENVLWQLFGPFGA 304
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
V SV+V RD T++ G+G+V EA A+ LN L + +++ +
Sbjct: 305 VQSVKVIRDFQTQKCKGFGFVTMTNYDEALMAIQSLNGYTLGNRVLQVSF 354
>gi|348509181|ref|XP_003442130.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oreochromis
niloticus]
gi|410902663|ref|XP_003964813.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Takifugu rubripes]
gi|432868072|ref|XP_004071397.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oryzias latipes]
Length = 345
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 152/324 (46%), Gaps = 55/324 (16%)
Query: 25 IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 84
I+ NG D++ T+L V L ++ + LF +G++ S ++ RD T +SLGYG
Sbjct: 27 ISTNGSTDDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYG 82
Query: 85 YVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKAL 144
+VNY ++A +A++ LN L K I++ SY P+ N+++ L K++ K +
Sbjct: 83 FVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMSQKDM 140
Query: 145 HDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG------------- 190
FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 141 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVK 200
Query: 191 ------------MLLNDKQV----FVGPFLRKQER--------ESTADKTRFN------- 219
+L Q + GP + +R +S N
Sbjct: 201 FANNPSQKTGQALLTQLYQTAARRYTGPLHHQTQRFRFSPITIDSMTSLAGVNLTGPTGA 260
Query: 220 --NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSV 276
++V NLS E L ++FG FG +T+ V+RD K K FGFV + D+AA ++
Sbjct: 261 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 320
Query: 277 EALNGKKFDDKEWYVG-KAQKKYE 299
+LNG + D+ V K K+++
Sbjct: 321 ASLNGYRLGDRVLQVSFKTSKQHK 344
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 147/312 (47%), Gaps = 43/312 (13%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T ++ D++++F ++G IIT
Sbjct: 99 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK------------FDDKEWYVGKA 294
S ++ G S+ GF+ FD ++A +++ LNG+K ++ G+A
Sbjct: 153 SRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQA 212
Query: 295 ---------QKKYE---REMELKGKFEQSLKETADKFEGLNL----------YVKNLDDS 332
++Y + +F ++ G+NL +V NL
Sbjct: 213 LLTQLYQTAARRYTGPLHHQTQRFRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPE 272
Query: 333 ISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ L +LF FG +T+ KV+RD +G GFV + +EA+ A+ +NG + +
Sbjct: 273 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 332
Query: 392 LYVALAQRKEER 403
L V+ K+ +
Sbjct: 333 LQVSFKTSKQHK 344
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 22/197 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG K K V A + ++ NLYV L ++S +
Sbjct: 99 LNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSGLPKTMSQKDM 140
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395
++LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ + ++P+ V
Sbjct: 141 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVK 200
Query: 396 LAQRKEERRARLQFSQM 412
A ++ + +Q+
Sbjct: 201 FANNPSQKTGQALLTQL 217
>gi|50290407|ref|XP_447635.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526945|emb|CAG60572.1| unnamed protein product [Candida glabrata]
Length = 602
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 184/416 (44%), Gaps = 60/416 (14%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +L+VG+L + +L ++F +S +VC + RSLG+GY+N+ +A RA
Sbjct: 63 NIALFVGNLAEEITSERLTEMFKVYKSFISAKVCTNADDNRSLGHGYINFGNKEDAERAT 122
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNIL 155
++ N+ + GK IRIM S RD RK+ NIF NL + + ++ +D F +GN+L
Sbjct: 123 EDFNYNKIMGKEIRIMPSIRDSVYRKNFGTNIFFSNLPLQKEKLTHRMFYDIFRKYGNVL 182
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM----------LLNDKQVFVGPFLR 205
S K L S+ GFV F+++ A+ I + N L DK++ P
Sbjct: 183 SVK-----LDSSKNIGFVYFEDDTIARDVIKEFNNKEFLGNIISCGLHFDKELRKKPNFD 237
Query: 206 KQ----------ERES----------TADKTRF-----NNVYVKNLSETTTEDDLKKIFG 240
KQ E+E DK + N +++KNL T +++ IF
Sbjct: 238 KQISKLDDDIIIEKEKEIFDSNKVEIKIDKDKVAIIQPNGIFIKNLPLDTNNNEILAIFS 297
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E G I S + + + + FV + D +++ NGK ++ +V A KY
Sbjct: 298 EVGPIKSVFLSPLNESREYLWAFVTYKDKASVEKAISLFNGKAIGNRNVFVTHAYSKYNI 357
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
F +L D+ + L + L S+ + +K SE +P +
Sbjct: 358 PTPKPILFLSNLSPICDR-KFLKQIMNQL--SVKPEDIKVHQSE-----------NPEHV 403
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL--AQRKEERRARLQFSQMRP 414
+ +G + F T ++ KA +N K+V +Y +++ +E+ +F Q+ P
Sbjct: 404 T-STGTIQFKTQDDLDKAKKFLNNKLVSGSIIYATTRKSKKNQEQTNYREFCQILP 458
>gi|71896483|ref|NP_001025497.1| ELAV-like protein 3 [Xenopus (Silurana) tropicalis]
gi|123913100|sp|Q28FX0.1|ELAV3_XENTR RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|89266725|emb|CAJ83874.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Xenopus (Silurana) tropicalis]
Length = 343
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 151/323 (46%), Gaps = 57/323 (17%)
Query: 16 AQPSPATNGIAN--NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
A P + GI N NG D++ T+L V L ++ + LF +G++ S ++ R
Sbjct: 13 ASNGPGSVGILNGTNGAADDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR 68
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D T +SLGYG+VNY ++A +A++ LN L K I++ SY P+ N+++
Sbjct: 69 DKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVS 126
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSL--GQSRGYGFVQFDNEESAKSAIDKLNG- 190
+L K+++ K + FS +G I++ ++ D + SRG GF++FD A+ AI LNG
Sbjct: 127 SLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQ 186
Query: 191 ------------------------MLLNDKQV----FVGPFLRKQER------------- 209
+L + Q + GP + +R
Sbjct: 187 KPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTN 246
Query: 210 ----ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
T T ++V NLS E L ++FG FG +T+ V+RD K K FGFV
Sbjct: 247 LAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 306
Query: 265 NFDDPDDAARSVEALNGKKFDDK 287
+ D+AA ++ +LNG + D+
Sbjct: 307 TMTNYDEAAMAIASLNGYRLGDR 329
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 46/314 (14%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 95
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV +L +T + +++++F ++G IIT
Sbjct: 96 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSSLPKTMNQKEMEQLFSQYGRIIT 149
Query: 247 STAVMRDADGK-SKCFGFVNFDDPDDAARSVEALNGKK------------FDDKEWYVGK 293
S ++ G S+ GF+ FD +A +++ LNG+K ++ G+
Sbjct: 150 SRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQ 209
Query: 294 AQKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVKNLD 330
A + + + ++ L +F G ++V NL
Sbjct: 210 ALLTHLYQTTAR-RYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLS 268
Query: 331 DSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
+ L +LF FG +T+ KV+RD +G GFV + +EA+ A+ +NG +
Sbjct: 269 PEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 328
Query: 390 KPLYVALAQRKEER 403
+ L V+ K+ +
Sbjct: 329 RVLQVSFKTSKQHK 342
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 24/212 (11%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
AD ++ N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+D
Sbjct: 30 ADDSK-TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPND 88
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ LNG K K V A + ++ NLYV +L
Sbjct: 89 ADKAINTLNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSSLPK 130
Query: 332 SISDDKLKELFSEFGTITSCKVMRD--PNGISRGSGFVAFSTAEEASKALTEMNGK--MV 387
+++ ++++LFS++G I + +++ D +SRG GF+ F EA +A+ +NG+ +
Sbjct: 131 TMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 190
Query: 388 VSKPLYVALAQRKEERRARLQFSQMRPPVGPR 419
S+P+ V A ++ + + + R
Sbjct: 191 ASEPITVKFANNPSQKTGQALLTHLYQTTARR 222
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++V +L ++S L+ LF G V +V+V RD +T + G+G+V EA A+ L
Sbjct: 262 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 321
Query: 102 NFTPLNGKPIRIMY 115
N L + +++ +
Sbjct: 322 NGYRLGDRVLQVSF 335
>gi|449459840|ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
gi|449498825|ref|XP_004160645.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
Length = 379
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 106/178 (59%), Gaps = 6/178 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+ YVG+LD V++ L++LF Q G VV+V V +D T GYG++ + + +A A+
Sbjct: 25 ATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIK 84
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CK 158
LN L GKPIR+ + +D GA N+FI NLD +D K L+DTFS FG I++ K
Sbjct: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 159 VATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ---EREST 212
+ D G SRG+GF+ +D+ E++ +AI+ +NG L ++Q+ V +K ER T
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGT 201
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 24/207 (11%)
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCF 261
L + E D T YV NL +E+ L ++F + G + + V +D + +
Sbjct: 13 LLGQHAPERNQDAT----AYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGY 68
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
GF+ F +DA +++ LN K K V KA + K++ D G
Sbjct: 69 GFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD---------------KKSLDV--G 111
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTI-TSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
NL++ NLD + + L + FS FG I T+ K+MRDP+ G SRG GF+++ + E + A+
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRAR 406
MNG+ + ++ + V+ A +K+ + R
Sbjct: 172 EAMNGQYLCNRQITVSYAYKKDTKGER 198
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNYNAAHEATR 96
V +L++G+LD V++ LYD F+ G +V+ ++ RD T S G+G+++Y++ +
Sbjct: 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDA 169
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPT 121
A++ +N L + I + Y+Y+ T
Sbjct: 170 AIEAMNGQYLCNRQITVSYAYKKDT 194
>gi|225430808|ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
Length = 373
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 110/192 (57%), Gaps = 6/192 (3%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
AN G A + + YVG+LD V + L++LF Q G VV+V V +D T GYG+
Sbjct: 11 ANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGF 70
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
V + + +A A+ LN L GKPIR+ + +D GA N+F+ NLD +D K L+
Sbjct: 71 VEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFVGNLDPDVDEKLLY 129
Query: 146 DTFSTFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
DTFS FG I++ K+ D G SRG+GFV +D+ E++ +AI+ +NG L ++Q+ V
Sbjct: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
Query: 204 LRKQ---EREST 212
+K ER T
Sbjct: 190 YKKDTKGERHGT 201
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 25/241 (10%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ +A++ + YV NL TE+ L ++F + G + + V +D + +GFV F
Sbjct: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA +++ LN K K V KA + K++ D G NL+V N
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQD---------------KKSLDV--GANLFVGN 118
Query: 329 LDDSISDDKLKELFSEFGTI-TSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
LD + + L + FS FG I T+ K+MRDP+ G SRG GFV++ + E + A+ MNG+
Sbjct: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQY 178
Query: 387 VVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 446
+ ++ + V+ A +K+ + R R + P AP + GPP +P
Sbjct: 179 LCNRQITVSYAYKKDTKGERHGTPAER-----VLAASNPSAPKSRPHTLFASGPPTLPNV 233
Query: 447 P 447
P
Sbjct: 234 P 234
>gi|338762832|gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
Length = 368
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 6/192 (3%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
AN G A + + YVG+LD V++ L++LF Q G VV+V V +D T GYG+
Sbjct: 11 ANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGF 70
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
V + + +A A+ LN L GKPIR+ + +D GA N+FI NLD +D K L+
Sbjct: 71 VEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSVDVGA-NLFIGNLDPDVDEKLLY 129
Query: 146 DTFSTFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
DTFS FG I++ K+ D G SRG+GF+ +D+ E++ +AI+ +NG L ++Q+ V
Sbjct: 130 DTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
Query: 204 LRKQ---EREST 212
+K ER T
Sbjct: 190 YKKDTKGERHGT 201
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 103/200 (51%), Gaps = 20/200 (10%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ +A++ + YV NL +E+ L ++F + G + + V +D + +GFV F
Sbjct: 16 QHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRS 75
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA +++ LN K K V KA + K++ D G NL++ N
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQD---------------KKSVDV--GANLFIGN 118
Query: 329 LDDSISDDKLKELFSEFGTI-TSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKM 386
LD + + L + FS FG I T+ K+MRDP G SRG GF+++ + E + A+ MNG+
Sbjct: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQY 178
Query: 387 VVSKPLYVALAQRKEERRAR 406
+ ++ + V+ A +K+ + R
Sbjct: 179 LCNRQITVSYAYKKDTKGER 198
>gi|348510833|ref|XP_003442949.1| PREDICTED: ELAV-like protein 1-like [Oreochromis niloticus]
Length = 341
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 145/314 (46%), Gaps = 51/314 (16%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG ++ G GD + T+L V L ++ +L LF+ +G+V S ++ RD SL
Sbjct: 18 SNGYEDHMG-GDEGKDAKTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 76
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A RA+ LN L K I++ SY P+ N++I L K++
Sbjct: 77 GYGFVNYLNPSDAERAISTLNGLRLQSKTIKV--SYARPSSDTIKDANLYISGLPKNMTQ 134
Query: 142 KALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG---------- 190
K + D FS +G I++ +V D G SRG F++FD A+ A+ LNG
Sbjct: 135 KDVEDMFSRYGRIINSRVLVDQGTGSSRGVAFIRFDKRAEAEEAVKNLNGQKPPGASEPI 194
Query: 191 -------------------MLLNDKQVFVGPFLRKQER-----------------ESTAD 214
+ N + F GP + +R +
Sbjct: 195 TVKFAANPNQVKNTQLLSQLYHNQSRRFGGPLHHQAQRFRFSPMGVDHMGSMGGVSVPGN 254
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAA 273
T +++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA
Sbjct: 255 STSGWCIFIYNLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 314
Query: 274 RSVEALNGKKFDDK 287
++ +LNG + DK
Sbjct: 315 MAIASLNGYRLGDK 328
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 138/317 (43%), Gaps = 43/317 (13%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAK 182
K N+ + L +++ L FS+ G + S K+ D + G S GYGFV + N A+
Sbjct: 31 KDAKTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPSDAE 90
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI LNG+ L K + V + R ++D + N+Y+ L + T+ D++ +F +
Sbjct: 91 RAISTLNGLRLQSKTIKV-SYAR-----PSSDTIKDANLYISGLPKNMTQKDVEDMFSRY 144
Query: 243 GIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDKEWY 290
G I ++ V+ D G S+ F+ FD +A +V+ LNG+K F
Sbjct: 145 GRIINSRVLVDQGTGSSRGVAFIRFDKRAEAEEAVKNLNGQKPPGASEPITVKFAANPNQ 204
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVK 327
V Q + +F L A +F G +++
Sbjct: 205 VKNTQLLSQLYHNQSRRFGGPLHHQAQRFRFSPMGVDHMGSMGGVSVPGNSTSGWCIFIY 264
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+ +NG
Sbjct: 265 NLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYR 324
Query: 387 VVSKPLYVALAQRKEER 403
+ K L V+ K +
Sbjct: 325 LGDKILQVSFKTSKGHK 341
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+D+L+ +F G + S ++RD G S +GFVN+ +P DA R++
Sbjct: 36 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPSDAERAIST 95
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG + K V A + ++D + NLY+ L +++ +
Sbjct: 96 LNGLRLQSKTIKVSYA------------------RPSSDTIKDANLYISGLPKNMTQKDV 137
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKM--VVSKPLYVA 395
+++FS +G I + +V+ D G SRG F+ F EA +A+ +NG+ S+P+ V
Sbjct: 138 EDMFSRYGRIINSRVLVDQGTGSSRGVAFIRFDKRAEAEEAVKNLNGQKPPGASEPITVK 197
Query: 396 LAQRKEERRARLQFSQM 412
A + + SQ+
Sbjct: 198 FAANPNQVKNTQLLSQL 214
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 291 VGKAQKKYEREM-ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
V + KY +E+ ++ +E + K NL V L +++ D+L+ LFS G +
Sbjct: 3 VRRGHIKYMKEVYDMSNGYEDHMGGDEGKDAKTNLIVNYLPQNMTQDELRSLFSSIGEVE 62
Query: 350 SCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
S K++RD G S G GFV + +A +A++ +NG + SK + V+ A+
Sbjct: 63 SAKLIRDKVAGHSLGYGFVNYLNPSDAERAISTLNGLRLQSKTIKVSYAR 112
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L ++S L+ +F G V +V+V RD +T + G+G+V EA A+ L
Sbjct: 261 IFIYNLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 320
Query: 102 NFTPLNGKPIRIMY 115
N L K +++ +
Sbjct: 321 NGYRLGDKILQVSF 334
>gi|403355493|gb|EJY77324.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 590
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 142/557 (25%), Positives = 245/557 (43%), Gaps = 71/557 (12%)
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKS---------GAGNIFIKNLDKSIDNKALHDTFS- 149
++ + +NGKP R + P ++K N+ ++NLDKSI ++ L + F+
Sbjct: 69 KMKYFEINGKPCRAI-----PDLKKEFETLGNEMGQRNNLKVQNLDKSITSQQLDEIFAK 123
Query: 150 TFGN--ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FG+ +LS KV+ +S SRGYGFV F + A+ A+ K + + P K
Sbjct: 124 VFGDDAVLSAKVSINSDYSSRGYGFVLFACPQLAEQALAKASEFNFE-----ISPHQPKD 178
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV-MRDADGKSKC--FGFV 264
RE + FNN+Y+ N ++ +++IFG++G I ST + M G + F FV
Sbjct: 179 RREL---RKTFNNIYINNFPSNWNKEKIEQIFGQYGTIKSTVIKMGKVQGTDQEAPFAFV 235
Query: 265 NFDDPDD-------AARSVEALNGKKFDDKEWYVGKAQKKYEREMELK---GKFEQSLKE 314
++D D+ A ++ N K++D + YV +A K RE E K +F+ S K
Sbjct: 236 CYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKEALPKTLREQEKKREQNRFKNSKKR 295
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374
NLYVKN ++ ++++LK F ++G I S K+ FV + E
Sbjct: 296 C-------NLYVKNFPENTTEEQLKAYFEKYGEIESIKLNHKEGAAV--YAFVCYKNPES 346
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQL 434
A+ A + + + K L++ ++KE R+ + + ++ R P A +
Sbjct: 347 ATYAKQQSQTQTLNGKQLFLNFYEQKEVRKIQQEDARDRTDFQNLRKQSPTSALNID--- 403
Query: 435 FYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPI 494
++ F Q L+ ++ Q QR GG GP QQ
Sbjct: 404 -------MLNRPETFQLLQYLMITIQR---QQQNQRYNNPQRQGGNMQQRGPRQQYNNQG 453
Query: 495 PLMQ-PRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIG------GMPFRDAAFSQ 547
Q + LP+G++ P PV +P ++P + +P ++Q
Sbjct: 454 GYQQRNQQLPQGQMPPMNQQMRQPQQPVI-MPSQVMPALAQVAPSAMNQNLPPHILTYNQ 512
Query: 548 PMQTGALASALANASPEQQRTLLGENLYPLVDQLE-HDNAAKVTGMLLEMDQTEVLHLLE 606
+ L +A ++ +GE +Y V++L D A K+TGML+++ E+ +
Sbjct: 513 NGMSKIF--PLVSALNPNYKSQVGEFIYEHVEELAGEDLAPKITGMLIDLPIVEIQAYVT 570
Query: 607 SPEALKAKVAEAMEVLR 623
LK K+ EA +L+
Sbjct: 571 DFMKLKIKINEASTLLK 587
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 42/262 (16%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTE 232
V+ ++ + K K+ +N K P L+K+ + + NN+ V+NL ++ T
Sbjct: 55 VRINDNDMFKQIARKMKYFEINGKPCRAIPDLKKEFETLGNEMGQRNNLKVQNLDKSITS 114
Query: 233 DDLKKIFGE-FG--IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
L +IF + FG + S V ++D S+ +GFV F P A +++ + F+
Sbjct: 115 QQLDEIFAKVFGDDAVLSAKVSINSDYSSRGYGFVLFACPQLAEQALAKASEFNFE---- 170
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
+ Q K RE L++T + N+Y+ N + + +K++++F ++GTI
Sbjct: 171 -ISPHQPKDRRE----------LRKTFN-----NIYINNFPSNWNKEKIEQIFGQYGTIK 214
Query: 350 SCKV-MRDPNGISRGSGFVAFSTAEE----------ASKALTEMNGKMVVSKPLYVALA- 397
S + M G + + F AF E+ A A+ + N K LYV A
Sbjct: 215 STVIKMGKVQGTDQEAPF-AFVCYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKEAL 273
Query: 398 ------QRKEERRARLQFSQMR 413
Q K+ + R + S+ R
Sbjct: 274 PKTLREQEKKREQNRFKNSKKR 295
>gi|406602053|emb|CCH46373.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 694
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 106/182 (58%), Gaps = 5/182 (2%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GNI+++ L I + L F FG I S K+ D G+S+GYGF+ + + SA AI K
Sbjct: 129 GNIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISK 188
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
LNG+L+N ++++ + K+ER D K+ F N+Y+KNL T D + +F +FG I
Sbjct: 189 LNGLLVNGSKLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYTIDQFESLFAKFGEI 248
Query: 246 TSTAV--MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY-VGKAQKKYEREM 302
+S+ + + D D SK FGF+NF + + A ++E+LN + ++ V +AQ++ ER
Sbjct: 249 SSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSRAQRRDERNE 308
Query: 303 EL 304
+
Sbjct: 309 QF 310
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 179/428 (41%), Gaps = 90/428 (21%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YV+ L T +DL KIF FG ITS+ ++ D G+SK +GF+N+ D A ++ L
Sbjct: 130 NIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISKL 189
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + + Y+ K ER + FE+S NLY+KNL + D+ +
Sbjct: 190 NGLLVNGSKLYLNHHIAKKERIQRI--DFEKS--------NFTNLYIKNLPIDYTIDQFE 239
Query: 340 ELFSEFGTITSCKV--MRDPNGISRGSGFVAFSTAEEASKALTEMNG-KMVVSKPLYVAL 396
LF++FG I+S + + D + S+ GF+ F E A A+ +N ++ ++ L V+
Sbjct: 240 SLFAKFGEISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSR 299
Query: 397 AQRKEERRARLQFSQ--------MRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPG 448
AQR++ER + + P G ++P LF Q PPI
Sbjct: 300 AQRRDERNEQFHNNLNPKNSNNYQTTPYGQFQIRNNSISPQPAPILF--QSPPIT----- 352
Query: 449 FGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIY 508
Q +PG+ + P+ QP P+ + + I P +P I
Sbjct: 353 ---SQGSIPGIITS---PITQP---------------PVPHSIEAI--TSPNFIPNQLI- 388
Query: 509 RYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQ 566
PP + +P GVP G+ P T L +P+QQ
Sbjct: 389 --PPSTASTVTSIPPTGVPNGL-------------------PTTTIQLPI----PAPDQQ 423
Query: 567 -RTLLGENLYPLV-DQLEHDNAAK----VTGMLLEMDQTE-----VLHLLESPEALKAKV 615
L NL P + D + H + A V+ ++ D+ E + SPEA +A +
Sbjct: 424 PSNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALI 483
Query: 616 AEAMEVLR 623
A VL
Sbjct: 484 AMHGNVLH 491
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
NLYV+NL SI D L F+ FG I S K+M G SRG GFV F T+ EAS+AL M
Sbjct: 426 NLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIAM 485
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQG 439
+G ++ + L+V+ AQ+ ++R + Q + P+ P Y + Q Q + Q
Sbjct: 486 HGNVLHGQMLHVSFAQKNNKKRFG-KQQQQQIPIHPNGSYYNGLYQNPNQPPYQYYNTQA 544
Query: 440 PPIIPPQPGFGYQQQLVPGMRPNY--FVPMVQPGQQNQRPG 478
+PP G GY G R Y + P Q Q +Q G
Sbjct: 545 GQPVPPPSGNGYGN----GYRSYYNGYKPFKQHQQYDQGTG 581
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++YV L + L+ +F G++ S ++ D RS GYG++NY+ A A+ +
Sbjct: 130 NIYVRGLGPEITTEDLFKIFEPFGEITSSKIVND-EFGRSKGYGFINYSDGSSADDAISK 188
Query: 101 LNFTPLNGKPIRIMYSYRDPT------IRKSGAGNIFIKNL--DKSIDNKALHDTFSTFG 152
LN +NG + + + KS N++IKNL D +ID F+ FG
Sbjct: 189 LNGLLVNGSKLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYTID--QFESLFAKFG 246
Query: 153 NILSCKV--ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF-VGPFLRKQER 209
I S + D S+ +GF+ F N ESA SAI+ LN ++ Q V R+ ER
Sbjct: 247 EISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSRAQRRDER 306
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 10/114 (8%)
Query: 308 FEQSLK------ETADKFEGL----NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
FE+S K E + +F+ L N+YV+ L I+ + L ++F FG ITS K++ D
Sbjct: 105 FEKSFKLKFPQVEISVEFDALTHPGNIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDE 164
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQ 411
G S+G GF+ +S A A++++NG +V LY+ K+ER R+ F +
Sbjct: 165 FGRSKGYGFINYSDGSSADDAISKLNGLLVNGSKLYLNHHIAKKERIQRIDFEK 218
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
N++++NL SID+ LH +F+ FG I+S K+ T G+SRGYGFV F A A+
Sbjct: 425 SNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIA 484
Query: 188 LNGMLLNDKQVFVGPFLRKQERE 210
++G +L+ + + V F +K ++
Sbjct: 485 MHGNVLHGQMLHVS-FAQKNNKK 506
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YV+NL+ + + L F FGII S +M +G+S+ +GFV F +A+R++ A+
Sbjct: 426 NLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIAM 485
Query: 280 NGKKFDDKEWYVGKAQKKYEREM 302
+G + +V AQK ++
Sbjct: 486 HGNVLHGQMLHVSFAQKNNKKRF 508
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV +L S++DS L+ F G +VS ++ S GYG+V + + EA+RAL
Sbjct: 425 SNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMT-TDEGESRGYGFVCFRTSPEASRALI 483
Query: 100 ELNFTPLNGKPIRIMYSYRD 119
++ L+G+ + + ++ ++
Sbjct: 484 AMHGNVLHGQMLHVSFAQKN 503
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,624,869,040
Number of Sequences: 23463169
Number of extensions: 494850625
Number of successful extensions: 1647921
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 15682
Number of HSP's successfully gapped in prelim test: 14581
Number of HSP's that attempted gapping in prelim test: 1450267
Number of HSP's gapped (non-prelim): 126633
length of query: 650
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 501
effective length of database: 8,863,183,186
effective search space: 4440454776186
effective search space used: 4440454776186
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)