BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006316
(650 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/662 (65%), Positives = 525/662 (79%), Gaps = 50/662 (7%)
Query: 1 MAQVQVQPQAP--VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYD 58
MAQVQ+Q Q P A +PAT+G A A QF +TSLYVGDLD +V DSQL+D
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGAT------ATQFGNTSLYVGDLDFNVTDSQLFD 54
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
F QMG VV+VRVCRDL TRRSLGYGYVN+ +A RA+ ELN+ PL GKPIR+MYS+R
Sbjct: 55 AFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR 114
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DP++R+SGAGNIFIKNLD+SID+KALHDTFS+FGNI+SCKVA DS GQS+GYGFVQ+ NE
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANE 174
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
ESA+ AI+KLNGMLLNDKQV+VGPFLR+QER+STA+KT+F NVYVKNL+E+TT+DDLK
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
FGE+G ITS VM+D +GKSK FGFVNF++ DDAAR+VE+LNG KFDDKEWYVG+AQKK
Sbjct: 235 FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL+ ++EQ+LKE ADKF+ NLYVKNLD SISD+KLKE+FS FGT+TS KVMRDPN
Sbjct: 295 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 354
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMR--- 413
G S+GSGFVAF+T EEA++A+++++GKM+ SKPLYVA+AQRKE+RR RL QFSQ+R
Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVA 414
Query: 414 --PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYF 464
P VGPRMP+YPP PG+GQQ+FYGQ PP +IPPQPG+GYQQQLVPGMR P++F
Sbjct: 415 MQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFF 474
Query: 465 VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPG-CNIPDVPVAG 523
+PMVQP QQ G +Q +QQ P+MQ +M PRGR++RYP G DVP
Sbjct: 475 MPMVQPQQQRPG---GGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVP--- 528
Query: 524 VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEH 583
PYD+G + P+ GALAS L+NA+PEQQRT+LGE LYPLV+Q+E
Sbjct: 529 --------PYDMGN--------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEA 572
Query: 584 DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLS 643
++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA A T+++ASL+
Sbjct: 573 ESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGA-----TEQLASLN 627
Query: 644 LN 645
L+
Sbjct: 628 LS 629
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 585 bits (1507), Expect = e-166, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 419/619 (67%), Gaps = 33/619 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SVN+S L DLFNQ+ V ++RVCRDL T RSLGY YVN+ +A+RA+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS+FG ILSCK
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-- 216
VA D +G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R +
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF P+ AA +V
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E +NG + YVG+AQKK +RE EL+ KFEQ +K +G NLY+KNLDDS++D+
Sbjct: 297 EKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDE 356
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE+FSE+G +TSCKVM + G+SRG GFVA+S EEA A+ EMNGKM+ KPLYVAL
Sbjct: 357 KLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Query: 397 AQRKEERRARLQ--FSQMRPPVGPRMPM---------YPPVAP--GLGQQLFYGQ-GPPI 442
AQRKEER+A LQ F+Q+R P G P+ +PP P G +F G G +
Sbjct: 417 AQRKEERQAHLQSLFTQIRSP-GTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGL 475
Query: 443 IPPQP-GFGYQQQLVPGMR-----PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL 496
+P QP G+GYQ Q +PGMR PN+ +P P Q+ +PG R G + A
Sbjct: 476 VPSQPMGYGYQVQFMPGMRPGAGPPNFMMPF--PLQRQTQPGPR---VGFRRGANNMQQQ 530
Query: 497 MQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQ---PMQTG 552
Q + + + R+ G N + A P G++P P + S P+
Sbjct: 531 FQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTIS 590
Query: 553 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 612
LAS LA ASP++ +LG++LYPLV+Q E NAAKVTGMLLEMDQ E+LHLLESPEALK
Sbjct: 591 KLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALK 650
Query: 613 AKVAEAMEVLRNVAQQQAT 631
AKV+EA++VLR A A
Sbjct: 651 AKVSEALDVLRRSADPAAV 669
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 575 bits (1481), Expect = e-163, Method: Compositional matrix adjust.
Identities = 335/637 (52%), Positives = 426/637 (66%), Gaps = 34/637 (5%)
Query: 5 QVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
Q Q PV++ PSP V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 24 QTSVQVPVSIPL-PSPVV--------VAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHVA 73
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 74 NVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL 132
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
IDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+SR
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR 372
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMRPPVGPRM 420
G GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA LQ FSQ+R P GP
Sbjct: 373 GFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAP-GPMS 431
Query: 421 PMY---PPVAPGLGQQLFYGQ-GPPIIPPQP-GFGYQQQLVPGMRP-----NYFV--PMV 468
+ PG Q ++ GQ G ++P QP G+G+Q Q +PGMRP N+ V P+
Sbjct: 432 GFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVPYPLQ 491
Query: 469 QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYR-YPPGCNIPDVPV-AGVPG 526
+ Q R G RR T +QQ Q LM P R G N D V G+
Sbjct: 492 RQPQTGPRMGFRRGATN-VQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILP 550
Query: 527 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
++P P D + + A + L S+LA+ASP + +LGE LYPLV++ E +
Sbjct: 551 PIIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHV 607
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 608 AKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 287/617 (46%), Positives = 382/617 (61%), Gaps = 47/617 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMRPPVGPRM---PMYPPVAPGLGQQLFYGQGPPI------------- 442
RKEER+A L M+ R P+ P P F P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 443 -IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQP-- 499
+ P P + Q G RP+ F M PG RP R M+ A +P +
Sbjct: 430 QLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVMSTQ 480
Query: 500 --------RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM-- 549
M PR + VP G+ + P QP
Sbjct: 481 RVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNAQP--QVTMQQPAVH 538
Query: 550 ---QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LE
Sbjct: 539 VQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLE 598
Query: 607 SPEALKAKVAEAMEVLR 623
SPE+L++KV EA+ VL+
Sbjct: 599 SPESLRSKVDEAVAVLQ 615
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust.
Identities = 291/629 (46%), Positives = 386/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 503 bits (1295), Expect = e-141, Method: Compositional matrix adjust.
Identities = 291/629 (46%), Positives = 385/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 503 bits (1295), Expect = e-141, Method: Compositional matrix adjust.
Identities = 291/629 (46%), Positives = 385/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 290/629 (46%), Positives = 384/629 (61%), Gaps = 71/629 (11%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR-------------------PPVG----------PRMPMYPP---- 425
RKEER+A L M+ PP G R YPP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Query: 426 --------VAPGLGQQLFYGQGPPIIP--PQPGFGYQQQLVPGMRP-NYFVPMVQPGQQN 474
A G F I P P+P F MRP + VP V Q+
Sbjct: 430 QLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFS-------TMRPASSQVPRVMSTQRV 482
Query: 475 QRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 534
+ G P A P + R +P+ Y+Y G P + P + P
Sbjct: 483 ANTSTQTMGPRPAAAAAAATPAV--RTVPQ---YKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 535 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 594
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLR 623
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 501 bits (1290), Expect = e-141, Method: Compositional matrix adjust.
Identities = 308/693 (44%), Positives = 403/693 (58%), Gaps = 111/693 (16%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 106
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 107 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCK 166
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 167 VAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 226
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KNL + +E++ +++F +FG ITS + RD +GKS+ FGFVN+ D A +V
Sbjct: 227 NFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAV 286
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D I D+
Sbjct: 287 DEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 346
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+E+F+ +GTITS KVMRD N
Sbjct: 347 KLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 359 -------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
G S+G GFV FS+ +EASKA+TEMN +M+ KPLYVALAQRK+ RR+
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRS 466
Query: 406 RLQFS-QMRPPVG----------PRMPMYPPVAPGLGQQLFY--GQ-GPPIIPPQPGFGY 451
+L+ S Q R + P+ M P V G GQQ F GQ G PQPG
Sbjct: 467 QLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGGLPFAPQPGM-- 524
Query: 452 QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA----QQPIPL--MQPRMLPRG 505
VPG RP + P PGQQ GGR G GP QQ Q IP+ M P +P G
Sbjct: 525 -MMGVPGGRPGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFAQGIPMGAMGPGGIPNG 576
Query: 506 RIY------RYPPGC----NIPDVPVAG---------------VPGGMLPGPYDIG--GM 538
Y ++ G +P +P+ V G M PG G
Sbjct: 577 MGYPQMGQVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGVPVQGQMRPGQGGRGQNAQ 636
Query: 539 PFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQ 598
P P G A +LA A QQ+ +LGE LYP + + + A K+TGMLLEMD
Sbjct: 637 PAAGRGEEAPA-AGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDN 695
Query: 599 TEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TE+L LLE EAL+AKV EA+ V + + T
Sbjct: 696 TELLSLLEDDEALRAKVDEALSVYDEYMKNKGT 728
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 291/644 (45%), Positives = 393/644 (61%), Gaps = 78/644 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQFSQMRPPVGPR-------MPMYPPVAPGLGQQLFYGQGPPIIP 444
LYVALAQRKEER+A L M+ G R + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 504
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQS-GPRPTLR------ 463
Query: 505 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 539
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV 520
Query: 540 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 579
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 318/727 (43%), Positives = 409/727 (56%), Gaps = 123/727 (16%)
Query: 14 VAAQPSPA--TNGIANNG---------GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
+ P+PA TNG +N Q S SLYVG+LD SV ++ LY+LF+
Sbjct: 5 TSTTPAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSS 64
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+GQV S+RVCRD TRRSLGY YVNYN RALDELN+T + GKP RIM+S RDP +
Sbjct: 65 IGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPAL 124
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAAN 184
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFG 240
+AI +NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ +++ +K+F
Sbjct: 185 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFE 244
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+FG ITS + RD++GKS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ER
Sbjct: 245 KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHER 304
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD---- 356
E EL+ ++E + E A K++G+NLYVKNL D + DDKL+ELF +GTITS KVMRD
Sbjct: 305 EEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPV 364
Query: 357 -----------------------------------------------PNGISRGSGFVAF 369
P G S+G GFV F
Sbjct: 365 ETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCF 424
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVGPRMP------- 421
S+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R + +
Sbjct: 425 SSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMG 484
Query: 422 ---MYPPVAPGLGQQLFY--GQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQR 476
M P V G GQQ F Q + PPQPG PG P F PGQQ
Sbjct: 485 QAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGPF-----PGQQ--- 536
Query: 477 PGGRRSGTGPMQQAQ---QPIPL--MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG---- 527
GGR G GP QQ Q +P+ MQ +P G Y G VPG
Sbjct: 537 -GGR--GVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGPM 593
Query: 528 ----------------MLPGPYDIGGMPFRDAAFSQP---MQTGAL-ASALANASPEQQR 567
M PG GG R A QP G L A AL+ A P+QQ+
Sbjct: 594 RGGYGGGRGGVPLGGQMRPGQ---GG---RGQAVGQPGPETPVGVLTAQALSAAPPQQQK 647
Query: 568 TLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 627
+LGE LYP + + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V +
Sbjct: 648 QMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMK 707
Query: 628 QQATGPS 634
++ P+
Sbjct: 708 NKSDEPA 714
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 283/614 (46%), Positives = 382/614 (62%), Gaps = 43/614 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK+ FG++G S VM D GKS+ FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQFSQMR---------PPVGPRMPMYPP-------VAPGLGQQLFYGQGPPI 442
RKEER+A L M+ P + P P PP + P + +Y G
Sbjct: 370 RKEERQAHLTNQYMQRMASVRVPNPVINPYQP--PPSSYFMAAIPPAQNRAAYYPPGQIA 427
Query: 443 -IPPQPGFGYQ-------QQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPI 494
+ P P + Q Q + +RP+ P P RP S + AQ+
Sbjct: 428 QLRPSPRWTAQGARPHPFQNMAGAIRPSAPRP---PTFSTMRPT---SQVPRVMSAQRVA 481
Query: 495 PLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM----- 549
M PR + VP G+ + P A QP
Sbjct: 482 NTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNTQQHLNTQP--QVAMQQPAVHVQG 539
Query: 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
Q AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 540 QEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPE 599
Query: 610 ALKAKVAEAMEVLR 623
+L++KV EA+ VL+
Sbjct: 600 SLRSKVDEAVAVLQ 613
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 318/727 (43%), Positives = 413/727 (56%), Gaps = 117/727 (16%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
AP A + S T+ NN Q S SLYVG+LD SV ++ LY+LF+ +GQV S+
Sbjct: 28 APEVTAVESSSPTSPNNNN-------QPHSASLYVGELDPSVTEAMLYELFSSIGQVASI 80
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN
Sbjct: 81 RVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGN 140
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +N
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 200
Query: 190 GMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLNDK+VFVG + K++R+S D K F N+Y+KN+ TE++ +KIF +FG ITS
Sbjct: 201 GMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITS 260
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ RD +GKS+ FGFVN+ + A +V+ ++ K+ ++ YVG+AQKK+ERE EL+ +
Sbjct: 261 ATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQ 320
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR----- 362
+E + E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD R
Sbjct: 321 YEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPD 380
Query: 363 ------------------------------------------------GSGFVAFSTAEE 374
G GFV FS+ +E
Sbjct: 381 SEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDE 440
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG----------PRMPMY 423
ASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R + P+ M
Sbjct: 441 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQ 500
Query: 424 PPVAPGLGQQLFY--GQ--GPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGG 479
P V G GQQ F GQ G P PQPG +PG RP + P PGQQ GG
Sbjct: 501 PAVFYGPGQQGFIPAGQRGGMPFA-PQPGM---VMGIPGGRPGQY-PGPFPGQQ----GG 551
Query: 480 RRSGTGPMQQAQ---QPIPL--MQ-PRMLPRGRIYRYPPG-----CNIPDVPVAGVPGGM 528
R G GP QQ Q IP+ MQ P +P G Y G V G+P G
Sbjct: 552 R--GMGPNQQMPPNFQGIPMGAMQGPGGIPNGMGYPQAMGQVQFGRGGGRGQVPGMPMGQ 609
Query: 529 -LPGP----------------YDIGGMPFRDAAFSQPMQTGAL-ASALANASPEQQRTLL 570
+ GP + AA + GAL A AL A+P QQ+ +L
Sbjct: 610 GMRGPGYQGRGGPQGGPRPQGGRGQNAAAQPAAGREEAPAGALTAQALNAAAPPQQKQML 669
Query: 571 GENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQA 630
GE LYP + + + A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V + +
Sbjct: 670 GEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKG 729
Query: 631 TGPSPTD 637
G +P D
Sbjct: 730 EGEAPAD 736
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 294/613 (47%), Positives = 384/613 (62%), Gaps = 43/613 (7%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 163
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 223
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN+++ + A ++
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLYVKNLDD D
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
LAQRK+ RR L+ SQ+ RM Y PG+ Q + GQ PP PG+G Q
Sbjct: 404 LAQRKDVRRQALE-SQIAQRAQQRM-QYGAGFPGM--QGYMGQPMYGYPPMPGYG---QP 456
Query: 456 VPGMRPNYFVPMVQPGQ-QN---QRPGGRRSGTGPMQQAQQPIP-----LMQPRMLPRGR 506
+PGM P M PG QN RP +G QP+P P +P
Sbjct: 457 MPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNG--------QPLPGGVPAYGMPPQVPYPG 508
Query: 507 IYRY---PPGCNIPDVPVA-----------GVPGGMLPGPYDIGG-MPFRDAAFSQPM-Q 550
Y P G IP P A G P G+ G GG MP R + P Q
Sbjct: 509 APGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQ 568
Query: 551 TGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
G L A +LA A+P +Q+ +LGE LYPL+ + + + A K+TGMLLEMD E+LHL+ES
Sbjct: 569 AGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQP 628
Query: 610 ALKAKVAEAMEVL 622
AL+ KV EA+ VL
Sbjct: 629 ALQEKVDEALRVL 641
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 294/613 (47%), Positives = 384/613 (62%), Gaps = 43/613 (7%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 163
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 223
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN+++ + A ++
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLYVKNLDD D
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 455
LAQRK+ RR L+ SQ+ RM Y PG+ Q + GQ PP PG+G Q
Sbjct: 404 LAQRKDVRRQALE-SQIAQRAQQRM-QYGAGFPGM--QGYMGQPMYGYPPMPGYG---QP 456
Query: 456 VPGMRPNYFVPMVQPGQ-QN---QRPGGRRSGTGPMQQAQQPIP-----LMQPRMLPRGR 506
+PGM P M PG QN RP +G QP+P P +P
Sbjct: 457 MPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNG--------QPLPGGVPAYGMPPQVPYPG 508
Query: 507 IYRY---PPGCNIPDVPVA-----------GVPGGMLPGPYDIGG-MPFRDAAFSQPM-Q 550
Y P G IP P A G P G+ G GG MP R + P Q
Sbjct: 509 APGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQ 568
Query: 551 TGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
G L A +LA A+P +Q+ +LGE LYPL+ + + + A K+TGMLLEMD E+LHL+ES
Sbjct: 569 AGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQP 628
Query: 610 ALKAKVAEAMEVL 622
AL+ KV EA+ VL
Sbjct: 629 ALQEKVDEALRVL 641
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 280/603 (46%), Positives = 382/603 (63%), Gaps = 43/603 (7%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LFN +G V S+RVCRD TRRSLGY YVN++ + +A
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LDELN+T + G+P RIM+S RDP++RK G GN+FIKNLD +IDNKALHDTFS FG ILSC
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D LG ++GYGFV FD+ ESA +AI+ +NGMLLNDK+V+VG + ++ER+S + K
Sbjct: 198 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALK 257
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KNL TE + +FG+FG ITS ++++D + K + FGFVN+ + + A ++
Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 317
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K++ K+ YVG+AQKK+ERE EL+ ++EQ E +K++G+NL++KNL D + D
Sbjct: 318 VDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++LK FS FGTITS K+M D G S+G GFV ++T EEA+KA+TEMN +M+ KPLYVA
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 396 LAQRKEERRARLQFSQMRPPVGPRMPM-------YPPVAPGLGQQLFYGQGPPIIPPQPG 448
LAQRKE RR++L+ +Q++ R+ P V G L YG G IP
Sbjct: 438 LAQRKEVRRSQLE-AQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVN 496
Query: 449 FGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM-QPRMLPRGRI 507
G +VPG N +PM PG Q P G + P A+ P+P +P M+P
Sbjct: 497 -GRGMPMVPGH--NGPMPMY-PGMPTQFPAGGPAPGYPGMNARGPVPAQGRPMMMPG--- 549
Query: 508 YRYPPGCNIPDVPVAG-VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQ 566
VP AG +P + GMP R F+ A+ LA E +
Sbjct: 550 ----------SVPSAGPAEAEAVPA---VPGMPER---FT--------AADLAAVPEESR 585
Query: 567 RTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 626
+ +LGE LYP V E + K+TGMLLEM +E+L LLE AL +V EA+ VL+
Sbjct: 586 KQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVLQEFV 645
Query: 627 QQQ 629
Q+
Sbjct: 646 DQE 648
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/615 (45%), Positives = 378/615 (61%), Gaps = 46/615 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRM-------PMYPPVAPGLGQQLFYGQGPPIIPP 445
RKEER+A L + + MR GP + + P P + FY P+ P
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPN-PVAPV 428
Query: 446 Q--PGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 503
+ P + Q P +P + P P S M+QA +P + P
Sbjct: 429 RQAPQWTSHQSRPPQYQPPAPLMRAVP------PRRMSSNISTMKQASTQVPRVAPHSQR 482
Query: 504 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFR-------DAAFSQPMQTGAL-- 554
I G P M P+ R + Q M+ L
Sbjct: 483 VANI-----GTQTAGARAQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQ 537
Query: 555 ------ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 608
AS+LA+A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+LESP
Sbjct: 538 GQEPLTASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESP 597
Query: 609 EALKAKVAEAMEVLR 623
E+L +KV EA+ VL+
Sbjct: 598 ESLHSKVEEAVAVLQ 612
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/610 (46%), Positives = 380/610 (62%), Gaps = 47/610 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 438
RKEER+A L + S MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 439 GPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 498
G P+ P QP + Q RP+ + P + ++QA +P
Sbjct: 424 G-PVTPTQPAPRWTSQ---PPRPS----CASMVRPPVVPRRPPAHISSVRQASTQVPRTV 475
Query: 499 P---RMLPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA 553
P R+ G P GC P P+ +P + ++ A P Q
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTPGRPL--LPCKCSSAAHST--YRVQEPAVHIPGQEPL 531
Query: 554 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 613
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L A
Sbjct: 532 TASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHA 591
Query: 614 KVAEAMEVLR 623
K+ EA+ VL+
Sbjct: 592 KIDEAVAVLQ 601
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 309/703 (43%), Positives = 400/703 (56%), Gaps = 143/703 (20%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKN+ + TTE++ + +F +FG ITS + RDA+ GKS+ FGFVNF D+AA +
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN K F ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 336 DKLKELFSEFGTITSCKVMRD--------------------------------------- 356
+KL+ELFS +GTITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 357 --------------PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 403 RRARLQFS-QMRPPVG----------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQ-PGFG 450
RR++L+ S Q R + P+ M P V G GQQ F IP Q G
Sbjct: 474 RRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQNF-------IPNQRGGMP 526
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT------------GPMQQ--------A 490
+QQ PG MV PG PGGR P QQ
Sbjct: 527 FQQ---PG--------MVIPGM----PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIG 571
Query: 491 QQPIPL-MQPRMLPRGRIY------RYPPGCNIPDVPVA-GVP---GGMLPGPYDIGGMP 539
Q +P+ MQ +P G Y + P G P G+P GM PG GMP
Sbjct: 572 AQGLPMGMQGAGIPNGLNYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMP 631
Query: 540 FRDAAFSQPMQTG--------ALASALANASPE-------------QQRTLLGENLYPLV 578
+ +P Q G A+ NASP QQ+ +LGE +YP +
Sbjct: 632 VQQ-GMGRPGQAGRGQGAPAQAVGQRDENASPNGLTLQVLNAAPPAQQKQMLGEAIYPKI 690
Query: 579 DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
+ + A K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 691 QAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS 76
A ++ +LY+ +L ++D +L +LF+ G + S +V RD +
Sbjct: 334 ASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFA 376
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/622 (44%), Positives = 378/622 (60%), Gaps = 60/622 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSL Y Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRMPMYPPVA-------PGLGQQLFYGQGPPI-IP 444
RKEER+A L + + MR GP + + A P + FY P +
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLSAMPQPPNRTFYSPNPVAPVR 429
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL-------- 496
P P + Q P +P P+++ Q P S M+QA +P
Sbjct: 430 PAPQWASHQSRPPQYQPP--TPLMRAVQ----PRRMSSNISTMKQASTQVPRVAQHSQRV 483
Query: 497 -------------MQPRMLPRGRIYRYPPGC-NI-PDVPVAGVPGGMLPGPYDIGGMPFR 541
+ P M+ Y+Y G N+ P V + M P G P
Sbjct: 484 ANIGTQTAGARAQVNPSMMRTMPHYKYSCGVRNVQPIVSSTHLQQVMEPAVLMQGQEPL- 542
Query: 542 DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 601
AS LA A P++Q+ +LGE +YP++ ++ A K+TGMLLE+D +E+
Sbjct: 543 ------------TASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSEL 590
Query: 602 LHLLESPEALKAKVAEAMEVLR 623
LH+LESPE+L +KV EA+ VL+
Sbjct: 591 LHMLESPESLHSKVEEAVAVLQ 612
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 289/644 (44%), Positives = 383/644 (59%), Gaps = 82/644 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS +G ITS KVM D G S+G GFV F+ A EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQ 453
QRKEER+A L MR G RM +Y P A G P +P F +
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAAS-------GFFVPTLPSNQRF-FGS 414
Query: 454 QLVPGMRPN-YFVPMVQP------------------------------------------ 470
Q+ MR +VP V+P
Sbjct: 415 QVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQV 474
Query: 471 --------GQQNQRPGGRRSGTGPMQQAQQP---IPLMQPRMLPRGRIYRYPPGCNIPDV 519
N R G R+ TG QQ P IP Q + R Y N+ +
Sbjct: 475 QGTHAAAAAANNMRNTGARAITG--QQTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNP 532
Query: 520 PVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVD 579
PV + P P + G S+ + LA+A P++Q+ +LGE LYP+++
Sbjct: 533 PVPQLHQTQ-PIPQQLQGKN------SEKLIASLLANA----KPQEQKQILGERLYPMIE 581
Query: 580 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623
+ + A K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+
Sbjct: 582 HMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 281/631 (44%), Positives = 384/631 (60%), Gaps = 53/631 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FG+ILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + LK+IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARL------QFSQMRPPVGPRM-------PMYPPVAPGLGQQLFYGQGPPI-IP 444
RKEER+A L + + MR GP + + P P + FY P +
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNPVAPVR 429
Query: 445 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA--QQP-IPLMQPRM 501
P P + Q P +P P + P S M+QA Q P +PL R+
Sbjct: 430 PAPQWASHQSRPPQYQPP------APLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQRV 483
Query: 502 LPRG------------RIYR----YPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAF 545
G I R Y C + +V G + + A
Sbjct: 484 ANIGTQTAGARAQVNASIMRAMPHYKYSCGVRNVQPIGSSAHL---------QQVLEPAV 534
Query: 546 SQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 605
Q AS LA A ++Q+ +LGE +YPL+ ++ A K+TGMLLE+D +E+LH+L
Sbjct: 535 LMQGQEPLTASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHML 594
Query: 606 ESPEALKAKVAEAMEVLR-NVAQQQATGPSP 635
ESPE+L +KV EA+ VL+ + A++ A +P
Sbjct: 595 ESPESLHSKVEEAVAVLQAHQAKESAPKSAP 625
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 289/692 (41%), Positives = 396/692 (57%), Gaps = 129/692 (18%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 58 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 117
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+GAGNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 118 LEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSC 177
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 237
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ T+++ +++F +FG +TS+++ RD +GKS+ FGFVNF + AA++
Sbjct: 238 ANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + D
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDD 357
Query: 336 DKLKELFSEFGTITSCKVMRDP-------------------------------------- 357
DKL+ +FSE+G ITS KVMRD
Sbjct: 358 DKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKG 417
Query: 358 ---NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMR 413
G S+G GFV FS ++A+KA+TEMN +MV KPLYVALAQRK+ R+++L+ S Q R
Sbjct: 418 DRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQAR 477
Query: 414 PPVGPRMPMYPPVAPGLGQQ------LFYGQGPPIIPPQPGFGY---QQQLVPGMRPNYF 464
+ RM A G+ QQ + GQ P +P G G Q +VPG++
Sbjct: 478 NQL--RMQQAAAQA-GMPQQYMQAPVYYAGQQPGFMPAPGGRGVPFPQGGIVPGVQGG-- 532
Query: 465 VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPV--- 521
+PGQ + GGR G P QQ M P P I ++ PG P+ P
Sbjct: 533 ----RPGQYPYQQGGR--GGVPPQQ-------MPPMGYP---INQFGPGAFPPNTPQYMA 576
Query: 522 ------------------------AGVPGGMLPGP----YDIGGMPFRDAAFSQP----- 548
AG+P G+ GP Y G P P
Sbjct: 577 AMGQVGALGGGRGGPAGRGPQGIPAGIPQGLQGGPAVPGYPPAGRPQNGGGRGTPRGNAN 636
Query: 549 -MQTGALASALANA------------------SPEQQRTLLGENLYPLVDQLEHDNAAKV 589
M G AS + A P+ Q+ ++GENL+P + ++ A K+
Sbjct: 637 FMAAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKI 696
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 621
TGMLLEMD E+++L E AL KV EA+ V
Sbjct: 697 TGMLLEMDNAELINLFEDDNALNVKVQEALAV 728
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 314/704 (44%), Positives = 407/704 (57%), Gaps = 114/704 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 46 ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KN+ + T+++ +K+F +FG ITS + RD +GKS+ FGFVNF D
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN--------------------------------- 358
+ D+KL+ELFS FGTITS KVMRD
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPK 405
Query: 359 --------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR
Sbjct: 406 ESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 465
Query: 405 ARLQFS-QMRPPVG----------PRMPMYPPVAPGLGQQLFY--GQ-GPPIIPPQPGFG 450
++L+ S Q R + P+ M P V G GQQ F GQ G PQPG
Sbjct: 466 SQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGM- 524
Query: 451 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQ---QPIPL--MQ-PRMLPR 504
+PG RP + P PGQQ GGR G GP QQ Q IP+ MQ P +P
Sbjct: 525 --VMGIPGGRPGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFQGIPMGAMQGPGGIPN 575
Query: 505 GRIYRYPPGCNIPDVPVAG----VPGGMLPGPYDIGGMPFRDAAFSQPMQ---------- 550
G YP + AG VPG +P I G + P+Q
Sbjct: 576 G--MGYPQMAQVQFGRGAGGRGQVPG--MPMGQGIRGPGYGQGRGGAPVQGGPRPQGGRG 631
Query: 551 ----------------TGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGML 593
TG L A L+ P QQ+ +LGE LYP + + + A K+TGML
Sbjct: 632 QPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGML 691
Query: 594 LEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 637
LEMD E+L LLE EAL+AKV EA+ V + + G +P +
Sbjct: 692 LEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAE 735
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KN+D ++D++ +++F +FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FST + A A+ EMN K + + LYV AQ+K ER L+
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/642 (43%), Positives = 377/642 (58%), Gaps = 78/642 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQFSQMR-------------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 441
ALAQRKEER+A L M+ PP G M P +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQ---NHAAYY---PP 419
Query: 442 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 497
+ P P + Q G RP+ F Q RPG R M+ A +P +
Sbjct: 420 SQIARLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQVPRV 470
Query: 498 QP----------------------------RMLPRGRIYRYPPGCNIPDVPVAGVPGGML 529
R +PR Y+Y G P P
Sbjct: 471 MSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQP---- 523
Query: 530 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 589
+ + A Q AS LA+A P++Q+ +LGE L+PL+ + A K+
Sbjct: 524 -------QVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Query: 590 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 631
TGMLLE+D +E+L++LESPE+L++KV EA+ VL+ ++AT
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 618
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 280/664 (42%), Positives = 390/664 (58%), Gaps = 89/664 (13%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A +A+ ++GIA N S SLYVG+L+ SVN++ L+++F+ +GQV S+RVC
Sbjct: 50 ADSAEEQGESSGIAEN----------SASLYVGELNPSVNEATLFEIFSPIGQVASIRVC 99
Query: 73 RDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFI 132
RD +++SLGY YVNY+ + +A++ELN+TP+ G+P RIM+S RDP+ R+SG GNIFI
Sbjct: 100 RDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFI 159
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNL +IDNKALHDTFS FG ILS KVATD LGQS+ +GFV ++ EE+A++AI+ +NGML
Sbjct: 160 KNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGML 219
Query: 193 LNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++V+VG + K++RES + K + N+YVKN+ TE + +++F FG ITS +
Sbjct: 220 LNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYL 279
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+DA+GKSK FGFVNF++ + AA++VE LN K+ + ++ YVG+AQKK ER ELK ++E
Sbjct: 280 EKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEA 339
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
E K++G+NL+VKNLD+ I +KL+E F FGTITS KVM D G S+G GFV FS
Sbjct: 340 VRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFS 399
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGL 430
T EEA+KA+TEMN +MV KPLYVALAQRK+ RR++L+ Q++ RM
Sbjct: 400 TPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLE-QQIQARNQMRM---------- 448
Query: 431 GQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA 490
Q G P F+P + GQQ P P +
Sbjct: 449 ---------------------QNAAAAGGLPGQFMPPMFYGQQGFFP--------PNGRG 479
Query: 491 QQPIPLMQPRMLPRGRIYRYP-----PGCNIPDVPVAGVP--------GGMLPGPYDI-- 535
P P P+M+ RGR +P PG N VPV G+P M P
Sbjct: 480 NAPFPGPNPQMMMRGRGQPFPEQWPRPGPNGQPVPVYGMPPQFQDFNGQNMRPQQQQQQQ 539
Query: 536 -----------GGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV----DQ 580
G P R A + P + LA+ +ANA E Q+ +LGE LY +
Sbjct: 540 QQQQQQQQQQRGYYPNRPAGGNVPAKD--LAALIANAPLEAQKRILGEELYQRIVATGKA 597
Query: 581 LEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ----ATG-PSP 635
E + A K+TGM+L ++ E+L LL+ E EA+ + ATG P+P
Sbjct: 598 QEPEAAGKITGMMLGLENQEILDLLDDEELFNNHFEEALNAFEEYKNSEGANAATGAPAP 657
Query: 636 TDRV 639
++
Sbjct: 658 SEEA 661
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 267/601 (44%), Positives = 375/601 (62%), Gaps = 64/601 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD +++SLGY YVNY+ + +A+
Sbjct: 51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAI 110
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN++P+ G+P RIM+S RDP+ R+SG GNIFIKNL +IDNKALHDTFSTFG ILSCK
Sbjct: 111 EELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD +GQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKA 230
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ +E+DLKK+F +G ITS + +DA+GKSK FGFVN++ + A ++V
Sbjct: 231 NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAV 290
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K+ + ++ YVG+AQKK ER ELK ++E + E K++G+NL++KNLDD+I +
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 350
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVAL 410
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRK+ RR++L+ Q++ RM Q
Sbjct: 411 AQRKDVRRSQLE-QQIQARNQMRM-------------------------------QNAAA 438
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML-----PRGRIYRYP 511
G P F+P + GQQ P P + P P P+M+ P G ++P
Sbjct: 439 TGGIPGQFIPPMFYGQQGFFP--------PNGRGNAPFPGPNPQMIMRRGQPFGGPEQWP 490
Query: 512 -PGCNIPDVPVAGVPGGMLPGPY-DIGGMPFRDAAFSQP-------MQTGALASALANAS 562
PG N VPV G+P P Y D G R P Q LA+ +A+A
Sbjct: 491 RPGPNGQPVPVYGIP----PQAYSDFNGQNIRQQRGYYPNRNQNKGRQQRDLAAIIASAP 546
Query: 563 PEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
P+QQ+ +LGE LYP + E + A K+TGM+L++D E+L LLE E +A
Sbjct: 547 PDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFTNHFEDA 606
Query: 619 M 619
+
Sbjct: 607 L 607
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 289/641 (45%), Positives = 394/641 (61%), Gaps = 55/641 (8%)
Query: 11 PVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVR 70
P A QP+ NN + +TSLYVG+LD SV ++ L+++F+ +G V S+R
Sbjct: 23 PAPAAEQPAVGNGEQRNNADAAN-----NTSLYVGELDPSVTEAMLFEIFSMIGTVASIR 77
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNI 130
VCRD TRRSLGY YVN+ A + RA+++LN++ + +P RIM+S RDP +R++G GNI
Sbjct: 78 VCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNI 137
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
FIKNLD IDNKALHDTF+ FGNILSCKVAT+ G S GYGFV ++ E+A++AI +NG
Sbjct: 138 FIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNG 196
Query: 191 MLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
MLLNDK+V+VG + ++ER++ ++TR F NVY KN+ T+D+ +K+F +FG ITS
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC 256
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ RD DGKSK FGFVNF+D ++A ++V+ L+ F ++ +V +AQKK ERE EL+ +
Sbjct: 257 VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
E + E KF+G+NLY+KN+ +S D++L+E F+ FG ITSCK+MR P+G+SRG GFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVC 376
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAP 428
+S EEA+KA++EMNGKM+ ++PLYVALAQRK+ RR +L+ M+ A
Sbjct: 377 YSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQ--RNQLRLQQQAAAQ 434
Query: 429 GLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQ 488
G+G GP + PQPG PG QPG RP R + G M
Sbjct: 435 GMGY-----PGPGMYYPQPG------AFPG----------QPGGMVPRP--RYAPAGMMP 471
Query: 489 QAQQPIPLMQPRMLPRGRI---YR--YPP----------GCNIPDVPVAGVPGGMLPGPY 533
Q P QP P G + YR PP P GV G P
Sbjct: 472 QGMPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPTGVNGAPRPAGQ 531
Query: 534 DIGGMPF------RDAAFSQPMQTG-ALASALANASPEQQRTLLGENLYPLVDQLEHDNA 586
+ G P R A + Q G A+ALA ASPE+Q+ +LGE +YP V + + A
Sbjct: 532 PVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELA 591
Query: 587 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 627
K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q
Sbjct: 592 GKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQ 632
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust.
Identities = 272/612 (44%), Positives = 357/612 (58%), Gaps = 84/612 (13%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+S+SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVNY +A RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN TP+ GK RIM+S RDP++RKSG GN+FIKNLDK ID+KAL+DTFS FGNILSC
Sbjct: 68 LDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC 127
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD S+G+GFV ++ +ESA AI K+NGM++N ++VFVGPF +ER + +
Sbjct: 128 KVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTE-VK 186
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NV+ KNLSE D LK++ ++G IT+ +M D GKSK FGF NF+ + A VE
Sbjct: 187 FTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVE 246
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
NGK F K Y G+AQKK ERE ELK FE K++G+NLY+KN+DDSI +DK
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDNDK 299
Query: 338 LKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+E+FS+FGTITS VM+D S+G GFV ++ +EA++A+TEMNG+M+ +KPLYVAL
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVAL 359
Query: 397 AQRKEERRARLQF-SQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP---QPGFGYQ 452
AQRK+ RRA+L+ Q + G R M PP YG GP P P YQ
Sbjct: 360 AQRKDIRRAQLEMQHQQKFKTGIRQQM-PPT---------YGSGPVFFTPAPVNPQVVYQ 409
Query: 453 QQL------------VP-GMRPNYFVPMVQPGQQNQRPGG---RRSGTGPMQQAQQPIPL 496
Q + VP G N QP Q R G R++G P QPIP+
Sbjct: 410 QMMPRPRNWNGQPVGVPQGQYANMNYARGQPRQNGPRQNGGQPRQNGPRPDVSGAQPIPV 469
Query: 497 MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA--- 553
Q L D A +Q + A
Sbjct: 470 QQQTTL---------------------------------------DVAQTQQAASSAESA 490
Query: 554 --LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLE-MDQTEVLHLLESPEA 610
L S + S +QQ LGE+LYPL+ + D A K+TGMLL+ + E+ L + +
Sbjct: 491 LNLQSIINLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDL 550
Query: 611 LKAKVAEAMEVL 622
L K+ EA+EVL
Sbjct: 551 LADKIREALEVL 562
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ ++D S+++ +L ++F+Q G + S V +D S G+G+V Y A EAT
Sbjct: 280 KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA+ E+N + KP+ + + R
Sbjct: 340 RAVTEMNGRMIGTKPLYVALAQR 362
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 263/542 (48%), Positives = 338/542 (62%), Gaps = 77/542 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 46 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KN+ + T+++ +K+F +FG ITS + RD +GKS+ FGFVNF D
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN--------------------------------- 358
+ D+KL+ELFS FGTITS KVMRD
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKES 405
Query: 359 ------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++
Sbjct: 406 EEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 465
Query: 407 LQFS-QMRPPVG----------PRMPMYPPVAPGLGQQLFY--GQ-GPPIIPPQPGFGYQ 452
L+ S Q R + P+ M P V G GQQ F GQ G PQPG
Sbjct: 466 LEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGM--- 522
Query: 453 QQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQ---QPIPL--MQ-PRMLPRGR 506
+PG RP + P PGQQ GGR G GP QQ Q IP+ MQ P +P G
Sbjct: 523 VMGIPGGRPGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFQGIPMGAMQGPGGIPNGM 575
Query: 507 IY 508
Y
Sbjct: 576 GY 577
Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KN+D ++D++ +++F +FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FST + A A+ EMN K + + LYV AQ+K ER L+
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 551 TGALASALANA-SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 609
TG L + NA P QQ+ +LGE LYP + + + A K+TGMLLEMD TE+L LLE E
Sbjct: 646 TGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEE 705
Query: 610 ALKAKVAEAMEVLRNVAQQQATGPSPTD 637
AL+AKV EA+ V + + G +P +
Sbjct: 706 ALRAKVDEALSVYDEYMKNKGEGEAPAE 733
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/632 (42%), Positives = 383/632 (60%), Gaps = 64/632 (10%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
APVA + +G S SLYVG+L+ SVN++ L+++F+ +GQV S+
Sbjct: 21 APVASTEETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASI 80
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD T++SLGY YVN++ + +A+++LN++ + G+P RIM+S RDP++R++G GN
Sbjct: 81 RVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGN 140
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNL +IDNKALHDTF+ FG ILSCKVATD +G S+ +GFV ++ E+A++AI+ +N
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVN 200
Query: 190 GMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLND++V+VG + K++RES + K F NVY KN+ +E++ KK+F +G ITS
Sbjct: 201 GMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITS 260
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ +D +GKSK FGFVNF++ + A ++V+ LN K+ + ++ YVG+AQKK ER ELK +
Sbjct: 261 IYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQ 320
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
+E + E K++G+NL++KNLDD+I +KL+E F FG+ITS +VM D G S+G GFV
Sbjct: 321 YENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFV 380
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVA 427
FS+ EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q++ RM
Sbjct: 381 CFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLE-QQIQARNQMRMQNAAATG 439
Query: 428 PGLGQ---QLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT 484
GQ +FYGQ P PP GR +G
Sbjct: 440 GIPGQFIPPMFYGQQPGFFPPN--------------------------------GRGNGP 467
Query: 485 GPMQQAQQPIPLMQPRMLPRGRI----YRYP-PGCNIPDVPVAGVP--------GGMLPG 531
P P P M M+PRG+I ++P PG N VPV G+P G G
Sbjct: 468 FP-----GPNPQM---MMPRGQIPPPQGQWPRPGPNGQPVPVYGMPPVYGGDFNNGANGG 519
Query: 532 PYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV----DQLEHDNAA 587
G P R+ + Q LA+ +ANA +QQ+ +LGE LYP + E + A
Sbjct: 520 RQQRGYYPNRNQN-QKGRQQKDLAAIIANAPADQQKRILGEELYPKIVSTGKAQEPEAAG 578
Query: 588 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 619
K+TGM+L++D E+L LLE E +A+
Sbjct: 579 KITGMMLDLDNEEILALLEDDELFNTHFEDAL 610
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust.
Identities = 269/638 (42%), Positives = 379/638 (59%), Gaps = 71/638 (11%)
Query: 15 AAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
+A+ ++G+A N S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD
Sbjct: 37 SAEEQGESSGVAEN----------SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRD 86
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+++SLGY YVNY+ + +A++ELN+ P+ G+P RIM+S RDP+ R+SG GNIFIKN
Sbjct: 87 AVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKN 146
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
L +IDNKALHDTFS FG ILSCKVATD GQS+ +GFV ++ E+A++AI+ +NGMLLN
Sbjct: 147 LHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLN 206
Query: 195 DKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D++VFVG + K++RES + K F N+YVKN+ +E+ +K+F FG ITS + +
Sbjct: 207 DREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEK 266
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D DGKSK FGFVNF+D + A ++VE LN K+ + ++ YVG+AQKK ER ELK ++E
Sbjct: 267 DQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVR 326
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
E K++G+NL+VKNLDD+I +KL+E F FGTITS KVM D G S+G GFV F+T
Sbjct: 327 LEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTP 386
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQ 432
EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q++ RM
Sbjct: 387 EEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLE-QQIQARNQMRM------------ 433
Query: 433 QLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQ 492
Q G P F+P + GQQ P P +
Sbjct: 434 --------------------QNAAAGGLPGQFIPPMFYGQQGFFP--------PNGRGNA 465
Query: 493 PIPLMQPRMLPRGRIYRYP-----PGCNIPDVPVAGVP-------GGMLPGPYDIGGMPF 540
P P P+M+ RGR +P PG N VPV G+P G P
Sbjct: 466 PYPGPNPQMMMRGRGQPFPEQWPRPGPNGQPVPVYGIPPQFQQDFNGQNMRPQQQQQQQP 525
Query: 541 RDAAFSQPMQTGA--LASALANASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLL 594
R + QT LA+ +++ +QQ+ +LGE LYP + E + A K+TGM+L
Sbjct: 526 RGGYYPNRNQTSKRDLAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMML 585
Query: 595 EMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 632
++ E+L LL+ E +A+ + +A G
Sbjct: 586 GLENQEILDLLDDDELFNNHFEDALTAFEEYKKSEAAG 623
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust.
Identities = 268/605 (44%), Positives = 372/605 (61%), Gaps = 57/605 (9%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD SV ++ L+++FN +G V SVRVCRD TRRSLGY YVN++ + RAL
Sbjct: 45 NASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRAL 104
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN++P+ +P RIM+S RDP +RK+GAGNI+IKNLD +IDNKALHDTFS FG ILSCK
Sbjct: 105 EELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCK 164
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
+ATD G SRG+GFV +++ ESA+SAI +NGMLLNDK+VFVGP + K +R + + K
Sbjct: 165 IATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKN 224
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NV++KNL TE + +++ +FG +S + + +GK FGFV++ + D A +++
Sbjct: 225 SFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAI 284
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ +F + + G+A+KKYER EL+ ++E S E +K++G+NLY+KNLDD+I DD
Sbjct: 285 DGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDD 344
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F+ GTITS KVM D G S+G GFV +S+ EEA+KA+TEMN ++V KPLYV L
Sbjct: 345 KLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVL 404
Query: 397 AQRKEERRARLQ-----FSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 451
AQRK+ RR++LQ +QMR L QQ G P PG Y
Sbjct: 405 AQRKDVRRSQLQQQIQAKNQMR----------------LQQQAAAGGLPGQYMGNPGVFY 448
Query: 452 QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ---PRMLPRG-RI 507
Q PG P PG+ GG G P + P+P PR +P G +
Sbjct: 449 PGQ--PGFMP--------PGR-----GGMPFGANPQMMMRPPMPPQNQFPPRGVPGGPNM 493
Query: 508 YRYPP-----GCNIPDVPVAG--VPGGMLPGPY-DIGGMPFRDAAFSQPMQTGALASALA 559
Y PP G P P+ G P PGP G P R S+ + +++AL
Sbjct: 494 YGAPPQGYQQGGFPPQGPMRGGQPPRSGQPGPQGQFRGAPRRKDGESRVADS--ISNALE 551
Query: 560 NASPEQQRTLLGENLYP--LVDQLEHDNA---AKVTGMLLEMDQTEVLHLLESPEALKAK 614
NA EQ + L+GE LYP L ++ NA K+TGMLLEM E+L +++ E L+A+
Sbjct: 552 NAPEEQHKQLVGEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILEVIDDEEGLQAQ 611
Query: 615 VAEAM 619
+ +A+
Sbjct: 612 INDAI 616
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/604 (43%), Positives = 368/604 (60%), Gaps = 71/604 (11%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++SLGY YVN++ + +RA++EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ ++G+P RIM+S RDP++R++G GNIFIKNL +IDNKALHDTFS FG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D LGQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K F
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL+ ++IF FG +TS + D +GKS+ FGFVNF++ + A +V+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K+ D ++ YVG+AQKK ER ELK +E + E K++G+NL+VKNLDDSI +KL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 400 KEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQGPPIIPPQPGFGYQQQLV 456
K+ RR++L+ Q++ RM A GQ +FYGQ P PP G Q
Sbjct: 420 KDVRRSQLE-QQIQARNQMRMQNAAAAAGMPGQFMSPMFYGQQPGFFPPNGRGGAQGPFP 478
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
P P +P R G P Q Q PR P G+
Sbjct: 479 PN--PQMMMP--------------RGGQMPPPQGQ------WPRAGPNGQ---------- 506
Query: 517 PDVPVAGVP---GGMLPGP--------------YDIGGMPFRDAAFSQPMQTGALASALA 559
VPV G+P GG GP GG P RD LA+ ++
Sbjct: 507 -PVPVYGMPPVYGGEFNGPNGQRQQRGAYPPNRNQKGGRPQRD-----------LAAIIS 554
Query: 560 NASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
+QQ+ +LGE LYP + E + A K+TGM+L+++ E+L LLE E +
Sbjct: 555 TVPVDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFENHF 614
Query: 616 AEAM 619
+A+
Sbjct: 615 EDAL 618
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/586 (43%), Positives = 345/586 (58%), Gaps = 66/586 (11%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N A A
Sbjct: 33 VSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTA 92
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++LNFTP+ GK RIM+S RDP++RK GAGNIFIKNL IDNKAL+DTFS FGNILS
Sbjct: 93 IEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSS 152
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVATD G+S+G+G+V F+ +ESA AID LNGMLLN ++++VGP L K+ERES + K
Sbjct: 153 KVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMK 212
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN++ TT+ + +++ +FG S + R +G++K FGFVNF + +DA +
Sbjct: 213 ANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKC 272
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN +F + YV +AQKKYER+ ELK ++E + E K++G+NL++KNLDDSI D
Sbjct: 273 VEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDD 332
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+E F+ +GTITS KVM NG S+G GFV FST EEA+KA+TE N ++V KPLYVA
Sbjct: 333 KKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392
Query: 396 LAQRKEERRARL-QFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQ 454
+AQRK+ RR++L Q Q R Q+ + Q G Q
Sbjct: 393 IAQRKDVRRSQLAQQIQAR------------------NQMRFQQASAAAAAAAAAGMPGQ 434
Query: 455 LVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 514
+P P ++ M G P + + G M P M P G +Y PP
Sbjct: 435 FMP---PMFYGVMPPRGVPFNGPNPQMANMGAM-----PKNGMPPHQFRNGPVYGVPPQ- 485
Query: 515 NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENL 574
GG A +Q Q ++QR LGE L
Sbjct: 486 ---------------------GGFARNGPAANQFYQ-------------QKQRQALGEEL 511
Query: 575 YPLVDQLEHDN--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
Y + +D A K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 512 YKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEA 557
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 27/229 (11%)
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++L + L DKQ + E +T ++YV +L + +E L IF G +
Sbjct: 10 EQLENLSLQDKQ--------EGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAV 61
Query: 246 TSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
+S V RDA K+ + +VNF+D D A ++E LN K + +Q+
Sbjct: 62 SSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQR-------- 113
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
+ SL++ N+++KNL I + L + FS FG I S KV D G S+G
Sbjct: 114 ----DPSLRKKG----AGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGF 165
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFSQMR 413
G+V F E AS+A+ +NG ++ + +YV K+ER ++ F +M+
Sbjct: 166 GYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESK--FEEMK 212
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/595 (42%), Positives = 353/595 (59%), Gaps = 65/595 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLV 456
AQRK+ RR SQ+ + R M A G +PP +
Sbjct: 397 AQRKDVRR-----SQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPP---------MF 442
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNI 516
G+ P VP P Q P G G M P+ R
Sbjct: 443 YGVMPPRGVPFNGPNPQQMNPMGGMPKNG---------------MPPQFR---------- 477
Query: 517 PDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
+ PV GVP GG P +Q Q ++QR LGE LY
Sbjct: 478 -NGPVYGVPPQ--------GGFPRNANDNNQFYQ-------------QKQRQALGEQLYK 515
Query: 577 LVD--QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629
V + A K+TGM+L++ EV LLES E + EA + ++Q
Sbjct: 516 KVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQ 570
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/538 (44%), Positives = 329/538 (61%), Gaps = 87/538 (16%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 124 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 183
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +N MLLN+K+V+VG + K++R+S + K
Sbjct: 184 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKA 243
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+S T+++ + +F ++G +TS+++ RD++GKS+ FGFVNF + AA++V
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D I DD
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++FSE+G ITS KVMRD
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 359 -------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER-------- 403
G S+G GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASI 483
Query: 404 --RARLQFSQMRPPVG-PRMPMYPPVAPGLGQQLFY----GQGPPIIPPQPGFGYQQQLV 456
R +L+ Q G P+ M PV GQQ + G+G P PQ G G V
Sbjct: 484 QARNQLRMQQAAAQAGLPQQYMQTPVYYAPGQQPNFMPPGGRGMPF--PQGGLG--MPAV 539
Query: 457 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 514
G RP F P Q G + GG M P+ LP + ++PPG
Sbjct: 540 QGGRPGQFPPYAQQGGR----GG-----------------MPPQQLPIYPLGQFPPGA 576
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 559 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
A +P+QQ+ +LGENL+P + L+ D A K+TGMLLEMD E+++LLE AL AKV EA
Sbjct: 685 ATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAKVNEA 744
Query: 619 MEVLRNVAQQQ---ATGPSPT 636
M V + Q GP+PT
Sbjct: 745 MAVYDEYVKSQQGPGQGPAPT 765
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/467 (49%), Positives = 317/467 (67%), Gaps = 34/467 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T SLGY YVN++ +A+++
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN+T + GKP RIM+S RDP++RK G+GNI+IKNL +IDNK+LH+TFSTFGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
TD G SRG+GFV F+NE A+ AI+ ++GML+ND++V+V + K++R+S + K +F
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN+ + T++++ +++FG++G ITS + +D++GK + FGFVNF+D AA++V+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN +F ++ YVG+AQKKYER ELK ++E + E K++G+NL+VKNLDDSI D+KL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE F+ FGTITS KVMRD G SRG GFV FST EEA+KA+TE N ++V KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 399 RKEERRARL-----QFSQMRPPVG-----------PRMPMYPPVAPGLGQQLFYGQGPPI 442
RKE RR +L +QMR P M PP ++YG PP
Sbjct: 399 RKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPP--------MYYGGIPPR 450
Query: 443 IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQ 489
+P Q G Q+ GM N P QQ RPG G P Q
Sbjct: 451 VPFQ---GPNPQMA-GMPKN----GAMPPQQFGRPGPMYGGFAPQGQ 489
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNF 266
E E+ +T ++YV L T +E L IF G ++S V RDA S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
D + +++E LN K + +Q+ + SL++ N+Y+
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRIMWSQR------------DPSLRKKGSG----NIYI 130
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNL +I + L E FS FG I SCKV D NG+SRG GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 387 VVSKPLYVALAQRKEERRARLQ 408
+ + +YVAL K++R+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++D + + +LF + G++ S + +D S + G+G+VN+ A +A+D
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 100 ELNFTPLNGKPI---RIMYSY-------------RDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN G+ + R Y R + K N+F+KNLD SID++
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F+ FG I S KV D G SRG+GFV F E A AI + N ++ K ++V
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 204 LRKQER 209
RK+ R
Sbjct: 398 QRKEVR 403
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD S++D +L + F G + S +V RD T S G+G+V ++ EAT
Sbjct: 318 KYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEAT 376
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQARN 415
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 570 LGENLYPLVDQLEHDN--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 618
LGE LY V D+ A K+TGM+L++ +V+ LLE+ E L+ EA
Sbjct: 508 LGEQLYQKVFAKTQDDEAAGKITGMILDLPPQQVIQLLENDELLEQHFQEA 558
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/465 (49%), Positives = 307/465 (66%), Gaps = 18/465 (3%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD ++ ++ LYD+F+ +G + S+RVCRD T+ SLGY YVNY +A+
Sbjct: 49 NASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAI 108
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
ELN+ +NG+P RIM+S RDP IRK G+GNIFIKNL +IDNKALH+TFSTFG +LSCK
Sbjct: 109 QELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G SRG+GFV F E AK AI+ +NGML+N +V+V + K++R S + K
Sbjct: 169 VALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA 228
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ TT+++ +++F ++G I S A+ +DA+GK K FGFVNF D + AA++V
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F + YVG+AQKKYER ELK ++EQ E KF+G+NL++KNLDDSI D+
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDE 348
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE F+ +GTITS +VMRD G S+G GFV FS+ EEA+KA+TE N ++V KPLYVA+
Sbjct: 349 KLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAI 408
Query: 397 AQRKEERRARL-----QFSQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQGPPIIPPQPG 448
AQRK+ RR++L +Q+R + A GQ Q+FYG P P P
Sbjct: 409 AQRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQYMPQMFYGVMAPRGFPGPN 468
Query: 449 FGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQP 493
G + G+ N VP P Q RP GPM Q P
Sbjct: 469 PGMNGPMGAGIPKNGMVP--PPQQFAGRP------NGPMYQGMPP 505
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 25/142 (17%)
Query: 501 MLPRGRIYRYP---PGCNIPDVPVAGVP-GGMLPGPYDIGGMPFRDAAFSQPMQTGA--- 553
M PRG +P PG N P AG+P GM+P P G P + PM G
Sbjct: 459 MAPRG----FPGPNPGMNGP--MGAGIPKNGMVPPPQQFAGRP------NGPMYQGMPPQ 506
Query: 554 ----LASALANASPEQQRTLLGENLYPLVD-QLEHDNAA-KVTGMLLEMDQTEVLHLLES 607
++QR LGE LY V +++ +NAA K+TGM+L++ +V+ LL++
Sbjct: 507 NQFPRHQQQHYIQQQKQRQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDN 566
Query: 608 PEALKAKVAEAMEVLRNVAQQQ 629
E + + EA+ N ++Q
Sbjct: 567 DEQFEQQFQEALAAYENFKKEQ 588
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/500 (44%), Positives = 308/500 (61%), Gaps = 68/500 (13%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ P A P+P T A Q S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVPAASGDAPTPTT-------AAQQAHQ-NSASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ T++D +++F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + AA +V+ LN +F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM------- 354
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KV+
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKK 371
Query: 355 ---------------------------RDPNGISRGSG-------------------FVA 368
+ NG +G FV
Sbjct: 372 DEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVC 431
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVGPRMPMYPPVA 427
FS +EA+KA+TEMN KM+ KPLYVALAQRK+ R+ +L+ + Q R + RM
Sbjct: 432 FSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQARNQL--RMQQQQQQQ 489
Query: 428 PGLGQQLFY--GQGPPIIPP 445
G Q+F GQ P + PP
Sbjct: 490 FGGIPQMFIAPGQQPMMYPP 509
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 48/66 (72%)
Query: 556 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
S L+ A+P QQ+ +LGE LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKV 712
Query: 616 AEAMEV 621
EAM V
Sbjct: 713 DEAMSV 718
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 252/345 (73%), Gaps = 3/345 (0%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A P+P + + +A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD
Sbjct: 26 AAPAPEVTAVESTTAP-NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDA 84
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNL
Sbjct: 85 VTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNL 144
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLND
Sbjct: 145 DSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLND 204
Query: 196 KQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K+VFVG + K++R+S + K F NVY+KN+ + TE++ +++F +FG ITS + RD
Sbjct: 205 KKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRD 264
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+GKS+ FGFVNF + A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E +
Sbjct: 265 QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARL 324
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD N
Sbjct: 325 EKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 160/299 (53%), Gaps = 15/299 (5%)
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRG 169
+ + S P + + ++++ LD S+ L++ FS+ G + S +V D++ + S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
Y +V ++N + A++ LN L+ K + +R+ KT NV++KNL
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
L F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
+VG K +R+ KFE+ K N+Y+KN+D +++++ +ELF +FG IT
Sbjct: 208 FVGHHISKKDRQ----SKFEEM------KANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
S + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K ER L+
Sbjct: 258 SATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELR 316
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 174/343 (50%), Gaps = 63/343 (18%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMRPPVG 417
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R +
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 489
Query: 418 ----------PRMPMYPPVAPGLGQQLFY-GQ-GPPIIPPQPGFGYQQQLVPGMRPNYFV 465
P+ M P V G GQQ F GQ G PPQPG +PG RP +
Sbjct: 490 QQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQY- 546
Query: 466 PMVQPGQQNQRPGGRRSGTGPMQQ------------AQQPIP--LMQPRMLPRGRIYRYP 511
P PGQQ GGR G GP QQ Q P+P + P+ + + + R
Sbjct: 547 PGPFPGQQ----GGR--GMGPNQQLPPNFQGIPMGAMQGPVPNGMGYPQGMAQVQFGRGA 600
Query: 512 PG-CNIPDVPVAG--------------VP---GGMLPGPYDIGGMPFRDAAF--SQPMQT 551
G +P +P G VP G M PG G + A + +
Sbjct: 601 GGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAG 660
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
G A AL+ A P QQ+ +LGE LYP + + + A K+TGMLLEM+ TE+L LLE EAL
Sbjct: 661 GLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEAL 720
Query: 612 KAKVAEAM----EVLRNV-AQQQATGPS--PTDRVASLSLNDN 647
+AKV EA+ E ++N + +ATG + P + S +N
Sbjct: 721 RAKVDEALNVYDEYMKNKGGESEATGEAAKPKEAAKETSTEEN 763
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/327 (56%), Positives = 243/327 (74%), Gaps = 2/327 (0%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KNL +D+ +K+F +FG ITS + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +VE +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN 358
I D+KL+ELF +GTITS KVMRD N
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTN 374
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 156/290 (53%), Gaps = 15/290 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KNLD I DD+ +++F +FG ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE 271
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K ER L+
Sbjct: 272 GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 321
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 152/304 (50%), Gaps = 61/304 (20%)
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS-QMR 413
+ P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+ S Q R
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQAR 487
Query: 414 PPVG----------PRMPMYPPVAPGLGQQLFY--GQGPPIIPPQPGFGYQQQLVPGMRP 461
+ P+ M P V G GQQ F GQ PPQPG +PG RP
Sbjct: 488 NTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPGGRP 544
Query: 462 NYFVPMVQPGQQNQRPGGRRSGTGPMQQA----QQPIPL-MQ-PRMLPRGRIY------R 509
+ P PGQQ GGR G GP QQ Q IP+ MQ P +P G Y +
Sbjct: 545 GQY-PGPFPGQQ----GGR--GMGPNQQIPPNFAQGIPMGMQGPGGIPNGMGYPQMAQVQ 597
Query: 510 YPPGC----NIPDVPVA-------------GVP---GGMLPGPYDIGGMPFRDAAFSQPM 549
+ G +P +P+ G P G M PG GG AA + P
Sbjct: 598 FGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQ---GGRGQNAAAPAGPQ 654
Query: 550 Q---TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 606
+ G A L A P QQ+ +LGE LYP + + + A K+TGMLLEMD TE+L L
Sbjct: 655 EGAAGGVNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLTR 714
Query: 607 SPEA 610
P A
Sbjct: 715 KPCA 718
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
A ++ +LYV +L ++D +L +LF G + S +V RD + R
Sbjct: 332 ASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNVER 377
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 244/607 (40%), Positives = 352/607 (57%), Gaps = 30/607 (4%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V+ SLYVGDL SV + LYD F + + SVR+C+D S+ RSL YGY N+ + +A A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++ N + LNGK IR+M+S R P R++G GN+F+KNL +S+ N L D F FGNI+SC
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVAT G+SRGYGFVQF+ E++A +AI LN ++ DK+++VG F++K +R +K
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEK-- 199
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ N+Y+KNL +ED L++ F EFG I S A+ +D + + + FVNFD+P+DA R+ E
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG KF K YVG+AQKK ERE L+ +F++ +E + N+YVKN++ ++++++
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+ GTITS K+M D G S+G GFV FST EEA A+ +G+M KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 398 QRKEERRARLQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVP 457
Q+KE+R+ +LQ + V PG L+Y PG YQ +
Sbjct: 380 QKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTN------THPGMVYQSYPLM 433
Query: 458 GMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIP 517
N M+ N + T P A P Q R+ G++ R +
Sbjct: 434 WKSAN----MIGSSYPNS-----EAVTYPPMVANAPSKNRQNRI---GKLDRNA----VS 477
Query: 518 DVPVAGVPGGMLPGPYDIGGMPF-RDAAFSQPMQTGALASALANASPEQQRTLLGENLYP 576
VP MLP D R + M+ E Q LLGE L+P
Sbjct: 478 YVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQQRQSETVGMEMQ--LLGELLHP 535
Query: 577 LVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSP- 635
LV++LE A K+TGMLLEMD++E+L LL+SPE L +V EA EVL++ ++ T P+
Sbjct: 536 LVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS-SKTNLTAPNTH 594
Query: 636 -TDRVAS 641
+D +AS
Sbjct: 595 RSDYLAS 601
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L SV ++ L D+F + G +VS +V L +S GYG+V +
Sbjct: 105 DARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQED 163
Query: 93 EATRALDELNFTPLNGKPIRI--MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A A+ LN T + K I + D + N+++KNLD + L + F+
Sbjct: 164 AAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAE 223
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG I+S +A D RGY FV FDN E A+ A + +NG K ++VG +K ERE
Sbjct: 224 FGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Query: 211 STADK------------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
+ + +N+YVKN++ TE++L+K F + G ITST +M D GKS
Sbjct: 284 QLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKS 343
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K FGFV F P++A +V+ +G+ F K YV AQKK +R+M+L+ +F
Sbjct: 344 KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 179/322 (55%), Positives = 248/322 (77%), Gaps = 3/322 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S D K
Sbjct: 179 KVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN++ T+D+ + +F ++G +TS+++ RD + GKS+ FGFVNF +DA++
Sbjct: 239 ANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASK 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LN K+F + YVG+AQKK+ERE EL+ +E + +E A K++G+NLY+KNLDD +
Sbjct: 299 AVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVD 358
Query: 335 DDKLKELFSEFGTITSCKVMRD 356
D+KL++LFSEFG ITS KVMRD
Sbjct: 359 DEKLRQLFSEFGPITSAKVMRD 380
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 157/289 (54%), Gaps = 22/289 (7%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S V +D +G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGIS 361
E+K F N+YVKN++ ++DD+ + LF ++G +TS + RD G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQFS 410
RG GFV F++ E+ASKA+ E+N K + LYV AQ+K ER L+ S
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKS 331
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 163/339 (48%), Gaps = 71/339 (20%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD+++++ L+D F G ++S +V +D S GYG+V+Y A++A+
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKH 208
Query: 101 LNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN K + + + +D + K+ NI++KN++ + + F +G++
Sbjct: 209 VNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDV 268
Query: 155 LSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-- 211
S +A D G+SRG+GFV F + E A A+ +LN + + ++VG +K ERE
Sbjct: 269 TSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEEL 328
Query: 212 ----------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA------- 254
A K + N+Y+KNL + ++ L+++F EFG ITS VMRD+
Sbjct: 329 RKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEE 388
Query: 255 -----------------------DGKSK-----------------CFGFVNFDDPDDAAR 274
D K + FGFV F +PDDA +
Sbjct: 389 GESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATK 448
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+V +N + ++K YV AQ+K R K + EQS++
Sbjct: 449 AVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 19/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV L + TE L ++F + G + S V RDA +S + +VN++ D +++E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + +L++T N+++KNLD +I + L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKTGQG----NVFIKNLDVAIDNKAL 165
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ F+ FG I SCKV +D NG S+G GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 166 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 399 RKEERRARLQFSQMR 413
K++R+++ F +M+
Sbjct: 226 PKKDRQSK--FDEMK 238
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 145/321 (45%), Gaps = 63/321 (19%)
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR--------ARLQFSQMRPPV 416
GFV F+ ++A+KA+ EMN +MV +KPLYVALAQRK+ R+ AR Q +
Sbjct: 436 GFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQARNQLRMQQAAA 495
Query: 417 GPRMP---MYPPVAPGLGQQLFY-----GQGPPI----IPPQP--------GFGYQQ--- 453
MP M PV G G Q + G+G P +P QP GF QQ
Sbjct: 496 AAGMPQQYMQAPVFYGPGSQPGFMPPAGGRGMPYPQGGMPMQPGRPGQFPAGFAAQQGGR 555
Query: 454 -QLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPP 512
+ G+ P Y +P P Q MQQ QQ L GR
Sbjct: 556 GAMPQGIPPMYGLPGQFPPQGPFPQPNNPQFLAAMQQIQQ-------SALAGGRGGPAGR 608
Query: 513 GCNIPDVPVAGVPGGM-LPG--------------------PYDIGGMPFRDAAFSQPMQT 551
G VPV G+PGG LPG R A + +Q
Sbjct: 609 GPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGRAPAGAPAGARGAGAPEGLQ- 667
Query: 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 611
G LA+ N P QQ+ +LGE ++P + + + A K+TGMLLEMD TE++ L+E+ AL
Sbjct: 668 GQLAAVADN--PGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGAL 725
Query: 612 KAKVAEAMEVLRNVAQQQATG 632
++KV EA+ V + +QQ G
Sbjct: 726 RSKVDEALAVYDDYVRQQGDG 746
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
A ++ +LY+ +LD V+D +L LF++ G + S +V RD T
Sbjct: 340 ASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 354 bits (909), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 18/288 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 186 --------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ--FSQMR 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 26/203 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQ 408
++ ++V + +++R A L+
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELR 183
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,957,648
Number of Sequences: 539616
Number of extensions: 11787267
Number of successful extensions: 43008
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 688
Number of HSP's that attempted gapping in prelim test: 34872
Number of HSP's gapped (non-prelim): 5016
length of query: 650
length of database: 191,569,459
effective HSP length: 124
effective length of query: 526
effective length of database: 124,657,075
effective search space: 65569621450
effective search space used: 65569621450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)