Query 006316
Match_columns 650
No_of_seqs 463 out of 3104
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 21:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-97 4E-102 832.7 56.3 553 40-623 1-562 (562)
2 KOG0123 Polyadenylate-binding 100.0 6.9E-60 1.5E-64 488.9 28.6 353 40-407 2-356 (369)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.9E-49 1.1E-53 430.3 35.0 349 38-400 1-480 (481)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.3E-44 1.6E-48 377.8 28.3 344 38-402 2-351 (352)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-40 2.6E-45 373.7 39.4 266 39-305 88-372 (562)
6 KOG0117 Heterogeneous nuclear 100.0 1.7E-40 3.6E-45 330.3 30.7 250 125-406 81-337 (506)
7 KOG0145 RNA-binding protein EL 100.0 1.9E-39 4.1E-44 300.7 23.9 311 36-400 38-358 (360)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 3.2E-39 6.8E-44 349.1 26.2 296 37-349 56-369 (578)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 8.7E-38 1.9E-42 337.9 27.5 281 90-402 18-309 (578)
10 KOG0117 Heterogeneous nuclear 100.0 9E-37 2E-41 303.7 22.7 248 36-299 80-333 (506)
11 KOG0127 Nucleolar protein fibr 100.0 2.6E-36 5.6E-41 306.6 25.0 343 40-382 6-516 (678)
12 TIGR01645 half-pint poly-U bin 100.0 8.9E-36 1.9E-40 322.4 27.8 169 38-206 106-284 (612)
13 KOG0144 RNA-binding protein CU 100.0 1.2E-36 2.6E-41 301.3 18.9 364 36-400 31-504 (510)
14 TIGR01622 SF-CC1 splicing fact 100.0 3.3E-35 7.2E-40 322.3 29.8 342 36-403 86-451 (457)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.1E-35 8.8E-40 320.7 27.0 263 127-401 2-352 (481)
16 KOG0148 Apoptosis-promoting RN 100.0 2.3E-35 5E-40 275.9 20.1 234 126-401 5-239 (321)
17 KOG0148 Apoptosis-promoting RN 100.0 4.8E-34 1E-38 267.0 19.2 220 37-296 4-237 (321)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.5E-32 3.3E-37 305.5 29.7 256 34-296 170-501 (509)
19 KOG0127 Nucleolar protein fibr 100.0 1.7E-32 3.8E-37 278.8 22.8 275 128-402 6-380 (678)
20 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.3E-32 1.1E-36 301.2 26.2 270 126-401 174-503 (509)
21 KOG0123 Polyadenylate-binding 100.0 7.8E-32 1.7E-36 279.7 22.8 250 129-406 3-252 (369)
22 KOG0110 RNA-binding protein (R 100.0 5.1E-31 1.1E-35 277.3 16.8 327 38-401 226-694 (725)
23 TIGR01659 sex-lethal sex-letha 100.0 4.6E-30 1E-34 265.4 21.2 167 36-204 104-273 (346)
24 TIGR01659 sex-lethal sex-letha 100.0 4.2E-28 9.1E-33 250.8 24.0 170 215-402 104-277 (346)
25 smart00517 PolyA C-terminal do 100.0 8.9E-30 1.9E-34 189.2 5.2 64 562-625 1-64 (64)
26 KOG4212 RNA-binding protein hn 99.9 1.5E-26 3.2E-31 229.4 20.7 233 38-283 43-280 (608)
27 KOG1190 Polypyrimidine tract-b 99.9 1.1E-25 2.5E-30 222.0 22.7 349 34-399 23-490 (492)
28 KOG0144 RNA-binding protein CU 99.9 4.8E-27 1E-31 233.3 12.2 172 216-404 32-210 (510)
29 TIGR01645 half-pint poly-U bin 99.9 3.3E-26 7.1E-31 248.2 18.0 177 217-400 106-284 (612)
30 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5.8E-26 1.3E-30 240.8 18.9 170 38-207 88-350 (352)
31 KOG0131 Splicing factor 3b, su 99.9 1.8E-26 4E-31 204.5 10.4 172 37-209 7-180 (203)
32 KOG0124 Polypyrimidine tract-b 99.9 1.7E-25 3.6E-30 217.2 16.9 169 39-207 113-291 (544)
33 PF00658 PABP: Poly-adenylate 99.9 3.6E-27 7.9E-32 182.9 4.1 71 552-622 2-72 (72)
34 KOG0147 Transcriptional coacti 99.9 3.7E-26 8.1E-31 234.8 12.6 328 37-401 177-529 (549)
35 KOG0110 RNA-binding protein (R 99.9 7.1E-25 1.5E-29 231.2 17.6 258 36-299 382-695 (725)
36 TIGR01622 SF-CC1 splicing fact 99.9 1.6E-23 3.5E-28 229.9 19.9 176 217-399 88-265 (457)
37 KOG0145 RNA-binding protein EL 99.9 5.3E-24 1.1E-28 198.2 12.6 169 215-401 38-210 (360)
38 KOG1456 Heterogeneous nuclear 99.9 1.1E-20 2.4E-25 184.6 28.9 345 30-389 22-474 (494)
39 KOG0131 Splicing factor 3b, su 99.9 2.8E-22 6.1E-27 178.0 10.4 170 217-403 8-180 (203)
40 KOG0109 RNA-binding protein LA 99.9 3.2E-22 6.9E-27 189.8 9.6 151 40-209 3-153 (346)
41 KOG0146 RNA-binding protein ET 99.9 1.2E-21 2.7E-26 183.2 12.8 187 217-403 18-368 (371)
42 KOG0109 RNA-binding protein LA 99.9 7.3E-22 1.6E-26 187.3 10.3 149 219-401 3-151 (346)
43 KOG4211 Splicing factor hnRNP- 99.8 1.2E-18 2.6E-23 177.4 20.6 336 38-381 9-491 (510)
44 KOG0124 Polypyrimidine tract-b 99.8 7E-20 1.5E-24 178.3 11.0 272 127-398 113-533 (544)
45 KOG4212 RNA-binding protein hn 99.8 2.1E-19 4.6E-24 178.9 13.5 246 128-397 45-291 (608)
46 KOG4205 RNA-binding protein mu 99.8 1.2E-18 2.5E-23 174.8 12.2 171 38-210 5-180 (311)
47 KOG0146 RNA-binding protein ET 99.8 2.8E-18 6.2E-23 160.8 10.2 171 35-206 15-365 (371)
48 KOG4205 RNA-binding protein mu 99.7 8.2E-18 1.8E-22 168.7 9.2 172 126-299 5-178 (311)
49 KOG0105 Alternative splicing f 99.7 6.4E-17 1.4E-21 143.9 12.9 149 36-193 3-175 (241)
50 KOG1190 Polypyrimidine tract-b 99.7 5.7E-16 1.2E-20 153.8 19.9 248 38-296 149-490 (492)
51 KOG0120 Splicing factor U2AF, 99.7 1.3E-16 2.8E-21 167.5 16.0 257 33-296 169-491 (500)
52 KOG0147 Transcriptional coacti 99.7 4.4E-17 9.6E-22 168.3 10.4 180 216-400 177-358 (549)
53 KOG4206 Spliceosomal protein s 99.7 3.1E-16 6.7E-21 145.8 14.6 158 38-202 8-218 (221)
54 PLN03134 glycine-rich RNA-bind 99.7 1.2E-16 2.7E-21 144.8 11.4 89 33-121 28-116 (144)
55 KOG4211 Splicing factor hnRNP- 99.7 9.8E-16 2.1E-20 156.4 18.5 249 128-381 11-340 (510)
56 KOG0120 Splicing factor U2AF, 99.7 8.9E-16 1.9E-20 161.3 14.9 268 128-401 176-493 (500)
57 PLN03134 glycine-rich RNA-bind 99.6 2.3E-15 5E-20 136.5 12.9 82 319-400 32-114 (144)
58 KOG4206 Spliceosomal protein s 99.6 1.1E-14 2.4E-19 135.5 13.5 174 219-398 10-220 (221)
59 KOG1365 RNA-binding protein Fu 99.6 3.6E-13 7.9E-18 132.8 23.4 286 38-405 59-367 (508)
60 KOG0105 Alternative splicing f 99.5 5.2E-14 1.1E-18 125.4 12.1 152 125-284 4-175 (241)
61 KOG1456 Heterogeneous nuclear 99.5 7.8E-13 1.7E-17 130.1 21.4 242 36-287 117-475 (494)
62 PF00076 RRM_1: RNA recognitio 99.5 1.7E-14 3.8E-19 114.4 7.1 70 42-112 1-70 (70)
63 PF00076 RRM_1: RNA recognitio 99.5 5.3E-14 1.1E-18 111.6 9.3 70 324-393 1-70 (70)
64 KOG1548 Transcription elongati 99.5 4.2E-13 9.1E-18 131.3 17.3 180 216-398 132-350 (382)
65 KOG1457 RNA binding protein (c 99.5 2.7E-13 5.8E-18 124.6 14.0 155 37-194 32-274 (284)
66 KOG0122 Translation initiation 99.5 4E-14 8.7E-19 132.1 8.8 82 38-119 188-269 (270)
67 KOG0106 Alternative splicing f 99.5 3.2E-14 6.9E-19 134.1 7.0 148 40-202 2-167 (216)
68 KOG0121 Nuclear cap-binding pr 99.5 4.2E-14 9E-19 118.6 6.1 83 36-118 33-115 (153)
69 KOG0125 Ataxin 2-binding prote 99.5 7.5E-14 1.6E-18 135.4 8.5 82 319-401 94-175 (376)
70 KOG0149 Predicted RNA-binding 99.4 1.7E-13 3.6E-18 127.8 7.8 80 38-118 11-90 (247)
71 KOG0107 Alternative splicing f 99.4 1.5E-13 3.2E-18 122.0 6.7 77 39-120 10-86 (195)
72 PF14259 RRM_6: RNA recognitio 99.4 6.5E-13 1.4E-17 105.4 9.4 70 324-393 1-70 (70)
73 KOG4307 RNA binding protein RB 99.4 1.3E-12 2.7E-17 137.8 14.2 163 38-202 310-510 (944)
74 KOG0122 Translation initiation 99.4 4.3E-13 9.3E-18 125.4 8.9 81 320-400 188-269 (270)
75 KOG0106 Alternative splicing f 99.4 1.2E-13 2.6E-18 130.2 5.2 166 220-399 3-170 (216)
76 KOG0126 Predicted RNA-binding 99.4 2.9E-14 6.2E-19 126.9 0.8 78 38-115 34-111 (219)
77 KOG0149 Predicted RNA-binding 99.4 2.9E-13 6.2E-18 126.2 6.8 77 322-399 13-90 (247)
78 KOG1548 Transcription elongati 99.4 4.1E-12 8.9E-17 124.5 14.8 166 127-295 134-350 (382)
79 KOG0132 RNA polymerase II C-te 99.4 1.3E-11 2.9E-16 132.3 19.9 78 318-400 418-495 (894)
80 COG0724 RNA-binding proteins ( 99.4 1.4E-12 3.1E-17 133.1 12.3 124 39-162 115-260 (306)
81 PF14259 RRM_6: RNA recognitio 99.4 4.3E-13 9.4E-18 106.4 6.5 70 42-112 1-70 (70)
82 PLN03120 nucleic acid binding 99.4 1.4E-12 3E-17 126.3 8.6 76 39-118 4-79 (260)
83 PLN03120 nucleic acid binding 99.4 2.8E-12 6.1E-17 124.2 10.5 75 321-398 4-78 (260)
84 KOG1457 RNA binding protein (c 99.4 8.2E-12 1.8E-16 114.9 12.9 156 126-284 33-273 (284)
85 KOG0125 Ataxin 2-binding prote 99.4 2.2E-12 4.7E-17 125.4 9.4 102 102-206 73-174 (376)
86 KOG4207 Predicted splicing fac 99.4 8.7E-13 1.9E-17 119.9 6.2 78 321-398 13-91 (256)
87 KOG0107 Alternative splicing f 99.4 2E-12 4.3E-17 114.9 8.0 78 319-400 8-85 (195)
88 KOG0114 Predicted RNA-binding 99.3 3.1E-12 6.6E-17 103.4 8.0 85 32-119 11-95 (124)
89 PLN03213 repressor of silencin 99.3 3.3E-12 7.2E-17 129.8 8.6 124 39-172 10-145 (759)
90 KOG0114 Predicted RNA-binding 99.3 9.5E-12 2.1E-16 100.6 9.5 82 320-403 17-98 (124)
91 KOG0113 U1 small nuclear ribon 99.3 4.1E-12 8.8E-17 122.1 8.5 86 30-115 92-177 (335)
92 KOG0121 Nuclear cap-binding pr 99.3 5E-12 1.1E-16 106.2 7.0 81 319-399 34-115 (153)
93 KOG4207 Predicted splicing fac 99.3 3.5E-12 7.7E-17 116.0 6.3 81 37-117 11-91 (256)
94 PLN03213 repressor of silencin 99.3 9.3E-12 2E-16 126.6 9.8 80 318-400 7-88 (759)
95 KOG0132 RNA polymerase II C-te 99.3 2.1E-10 4.5E-15 123.3 20.0 109 217-343 420-528 (894)
96 smart00362 RRM_2 RNA recogniti 99.3 2.3E-11 4.9E-16 96.3 9.7 72 323-395 1-72 (72)
97 COG0724 RNA-binding proteins ( 99.3 2.2E-11 4.8E-16 124.2 11.6 164 218-381 115-286 (306)
98 KOG0130 RNA-binding protein RB 99.3 6.7E-12 1.5E-16 106.3 6.2 86 34-119 67-152 (170)
99 smart00362 RRM_2 RNA recogniti 99.3 1.2E-11 2.6E-16 97.9 7.2 71 41-113 1-71 (72)
100 PLN03121 nucleic acid binding 99.3 1.2E-11 2.6E-16 117.8 8.4 76 38-117 4-79 (243)
101 KOG0128 RNA-binding protein SA 99.3 9.2E-14 2E-18 150.5 -6.8 323 39-399 479-814 (881)
102 PLN03121 nucleic acid binding 99.3 2.6E-11 5.7E-16 115.5 10.4 76 320-398 4-79 (243)
103 KOG0126 Predicted RNA-binding 99.3 8.6E-13 1.9E-17 117.6 0.2 78 320-397 34-112 (219)
104 KOG0113 U1 small nuclear ribon 99.2 2.2E-11 4.7E-16 117.1 9.3 81 319-399 99-180 (335)
105 smart00360 RRM RNA recognition 99.2 1.8E-11 4E-16 96.4 7.1 70 44-113 1-70 (71)
106 smart00360 RRM RNA recognition 99.2 7.9E-11 1.7E-15 92.7 8.5 70 326-395 1-71 (71)
107 cd00590 RRM RRM (RNA recogniti 99.2 1.8E-10 3.9E-15 91.6 10.4 74 323-396 1-74 (74)
108 cd00590 RRM RRM (RNA recogniti 99.2 6.2E-11 1.4E-15 94.3 7.7 74 41-115 1-74 (74)
109 KOG0111 Cyclophilin-type pepti 99.2 1.2E-11 2.6E-16 113.4 3.4 84 320-403 9-93 (298)
110 KOG0108 mRNA cleavage and poly 99.2 4.4E-11 9.6E-16 125.7 7.2 81 40-120 19-99 (435)
111 PF13893 RRM_5: RNA recognitio 99.1 2E-10 4.3E-15 86.6 8.3 56 338-397 1-56 (56)
112 KOG0111 Cyclophilin-type pepti 99.1 2.8E-11 6.1E-16 111.0 3.5 83 37-119 8-90 (298)
113 KOG0130 RNA-binding protein RB 99.1 9.6E-11 2.1E-15 99.4 6.3 82 318-399 69-151 (170)
114 KOG0108 mRNA cleavage and poly 99.1 1.2E-10 2.7E-15 122.4 8.4 83 322-404 19-102 (435)
115 KOG4660 Protein Mei2, essentia 99.1 2.7E-10 5.9E-15 118.9 10.8 159 30-200 66-244 (549)
116 KOG4307 RNA binding protein RB 99.1 9E-09 1.9E-13 109.3 21.5 166 130-297 314-514 (944)
117 KOG0415 Predicted peptidyl pro 99.1 7.8E-11 1.7E-15 115.4 5.5 87 32-118 232-318 (479)
118 smart00361 RRM_1 RNA recogniti 99.1 3.3E-10 7.1E-15 89.6 8.1 60 335-394 2-69 (70)
119 KOG4454 RNA binding protein (R 99.1 3.1E-11 6.8E-16 110.9 2.1 148 37-201 7-158 (267)
120 KOG0129 Predicted RNA-binding 99.1 1.4E-09 3.1E-14 112.6 12.7 151 37-187 257-432 (520)
121 PF13893 RRM_5: RNA recognitio 99.1 2E-10 4.4E-15 86.5 4.7 56 56-116 1-56 (56)
122 KOG0128 RNA-binding protein SA 99.0 4.8E-11 1E-15 129.8 1.0 232 37-292 569-810 (881)
123 smart00361 RRM_1 RNA recogniti 99.0 4.4E-10 9.6E-15 88.9 5.8 61 53-113 2-69 (70)
124 KOG4849 mRNA cleavage factor I 99.0 1.1E-08 2.3E-13 100.4 16.0 76 322-397 81-159 (498)
125 KOG1365 RNA-binding protein Fu 98.9 3.3E-09 7.1E-14 105.3 9.2 160 39-200 161-356 (508)
126 KOG0226 RNA-binding proteins [ 98.9 3.6E-09 7.7E-14 99.9 7.2 166 40-206 97-270 (290)
127 KOG4208 Nucleolar RNA-binding 98.9 2.9E-09 6.4E-14 97.8 5.7 82 36-117 46-128 (214)
128 KOG0415 Predicted peptidyl pro 98.8 5.6E-09 1.2E-13 102.6 7.3 86 317-402 235-321 (479)
129 KOG0226 RNA-binding proteins [ 98.8 7.2E-09 1.6E-13 97.8 6.9 168 130-297 99-270 (290)
130 KOG4454 RNA binding protein (R 98.8 2E-09 4.3E-14 99.2 2.0 130 218-379 9-142 (267)
131 KOG4208 Nucleolar RNA-binding 98.8 2E-08 4.2E-13 92.5 7.5 80 321-400 49-130 (214)
132 KOG0153 Predicted RNA-binding 98.7 2.6E-08 5.6E-13 98.3 7.7 77 318-399 225-302 (377)
133 KOG0153 Predicted RNA-binding 98.7 2.4E-08 5.1E-13 98.5 6.8 77 36-118 225-302 (377)
134 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.8E-08 8.3E-13 102.2 7.3 81 318-398 402-483 (940)
135 KOG0129 Predicted RNA-binding 98.7 2.2E-07 4.9E-12 96.6 12.7 151 127-278 259-432 (520)
136 KOG0533 RRM motif-containing p 98.6 1.1E-07 2.4E-12 92.2 8.3 81 321-401 83-163 (243)
137 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.2E-07 2.6E-12 98.6 8.8 85 36-120 402-486 (940)
138 KOG0112 Large RNA-binding prot 98.6 3.1E-08 6.8E-13 108.7 3.9 158 36-203 369-528 (975)
139 KOG4210 Nuclear localization s 98.6 4.3E-08 9.3E-13 98.9 4.4 168 38-206 87-264 (285)
140 KOG0116 RasGAP SH3 binding pro 98.5 2.4E-07 5.2E-12 97.2 8.9 81 34-115 283-363 (419)
141 KOG0151 Predicted splicing reg 98.5 1.8E-07 4E-12 100.0 7.8 80 38-117 173-255 (877)
142 KOG0112 Large RNA-binding prot 98.5 8.9E-08 1.9E-12 105.2 4.8 160 216-400 370-531 (975)
143 KOG4210 Nuclear localization s 98.5 9.4E-08 2E-12 96.4 4.2 176 217-401 87-265 (285)
144 KOG0533 RRM motif-containing p 98.5 2.4E-07 5.3E-12 89.9 6.5 78 39-117 83-160 (243)
145 PF04059 RRM_2: RNA recognitio 98.4 1.3E-06 2.9E-11 72.5 7.3 78 40-117 2-85 (97)
146 KOG0116 RasGAP SH3 binding pro 98.3 1.6E-06 3.5E-11 91.1 9.3 79 320-399 287-366 (419)
147 KOG4209 Splicing factor RNPS1, 98.2 1.1E-06 2.3E-11 85.8 4.8 81 36-117 98-178 (231)
148 KOG0151 Predicted splicing reg 98.2 1.9E-06 4.1E-11 92.5 6.8 83 318-400 171-257 (877)
149 PF11608 Limkain-b1: Limkain b 98.2 2.3E-06 5E-11 67.3 5.5 72 40-121 3-79 (90)
150 PF04059 RRM_2: RNA recognitio 98.2 9.8E-06 2.1E-10 67.3 9.2 79 322-400 2-87 (97)
151 KOG2193 IGF-II mRNA-binding pr 98.1 3.3E-07 7.2E-12 92.3 -1.4 153 40-204 2-155 (584)
152 PF11608 Limkain-b1: Limkain b 98.1 1.3E-05 2.8E-10 63.2 7.6 70 322-400 3-77 (90)
153 KOG4849 mRNA cleavage factor I 98.1 0.00029 6.3E-09 69.8 18.0 78 219-296 81-161 (498)
154 KOG4209 Splicing factor RNPS1, 98.1 5.4E-06 1.2E-10 80.9 6.0 83 317-400 97-180 (231)
155 KOG4660 Protein Mei2, essentia 98.1 2.6E-06 5.5E-11 89.7 3.7 71 319-393 73-143 (549)
156 KOG2193 IGF-II mRNA-binding pr 97.9 2E-06 4.3E-11 86.9 0.3 157 219-402 2-159 (584)
157 PF08777 RRM_3: RNA binding mo 97.9 3.8E-05 8.3E-10 65.4 6.7 75 321-400 1-80 (105)
158 KOG4676 Splicing factor, argin 97.7 8.4E-06 1.8E-10 81.8 -0.3 204 127-388 7-214 (479)
159 PF08777 RRM_3: RNA binding mo 97.6 8.5E-05 1.9E-09 63.3 4.9 59 40-104 2-60 (105)
160 KOG1995 Conserved Zn-finger pr 97.6 8.3E-05 1.8E-09 74.7 5.3 85 36-120 63-155 (351)
161 KOG4676 Splicing factor, argin 97.5 2E-05 4.4E-10 79.2 -0.6 203 41-285 9-214 (479)
162 KOG1995 Conserved Zn-finger pr 97.4 0.00013 2.9E-09 73.3 4.1 82 320-401 65-155 (351)
163 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00043 9.3E-09 50.9 5.3 53 39-98 1-53 (53)
164 KOG1924 RhoA GTPase effector D 97.3 0.002 4.3E-08 70.7 11.8 13 176-188 207-219 (1102)
165 KOG0943 Predicted ubiquitin-pr 97.3 0.00012 2.6E-09 82.5 2.1 63 566-628 2607-2671(3015)
166 KOG0115 RNA-binding protein p5 97.3 0.00064 1.4E-08 65.2 6.6 90 271-385 6-95 (275)
167 KOG0115 RNA-binding protein p5 97.2 0.00042 9.2E-09 66.4 5.1 88 93-189 6-93 (275)
168 COG5175 MOT2 Transcriptional r 97.2 0.001 2.2E-08 65.8 7.1 79 323-401 116-204 (480)
169 COG5175 MOT2 Transcriptional r 97.1 0.00063 1.4E-08 67.2 5.1 80 37-116 112-200 (480)
170 KOG2202 U2 snRNP splicing fact 97.0 0.00035 7.5E-09 67.1 1.9 64 336-399 83-147 (260)
171 KOG2314 Translation initiation 97.0 0.0022 4.7E-08 67.9 7.8 79 320-398 57-142 (698)
172 KOG1924 RhoA GTPase effector D 96.9 0.0033 7.2E-08 69.0 8.7 10 589-598 718-727 (1102)
173 KOG1855 Predicted RNA-binding 96.9 0.00083 1.8E-08 68.8 3.5 67 37-103 229-308 (484)
174 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0028 6.1E-08 46.6 5.4 51 323-379 3-53 (53)
175 KOG2314 Translation initiation 96.8 0.0023 4.9E-08 67.8 6.7 79 126-204 57-142 (698)
176 KOG3152 TBP-binding protein, a 96.8 0.00066 1.4E-08 65.0 1.9 74 38-111 73-158 (278)
177 KOG2416 Acinus (induces apopto 96.8 0.0034 7.5E-08 66.9 7.4 84 318-406 441-528 (718)
178 KOG1996 mRNA splicing factor [ 96.7 0.0048 1E-07 60.1 7.5 68 335-402 300-369 (378)
179 KOG1855 Predicted RNA-binding 96.7 0.0017 3.7E-08 66.6 4.1 69 319-387 229-311 (484)
180 KOG2202 U2 snRNP splicing fact 96.6 0.00055 1.2E-08 65.8 0.5 63 54-117 83-146 (260)
181 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0066 1.4E-07 51.0 6.1 77 38-116 5-89 (100)
182 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.018 3.9E-07 48.3 7.6 71 127-199 6-84 (100)
183 KOG3152 TBP-binding protein, a 96.3 0.0026 5.5E-08 61.1 2.8 70 322-391 75-157 (278)
184 PF08952 DUF1866: Domain of un 96.1 0.027 5.8E-07 50.2 7.9 59 337-403 52-110 (146)
185 PF08952 DUF1866: Domain of un 96.0 0.0086 1.9E-07 53.3 4.3 72 37-117 25-105 (146)
186 KOG2416 Acinus (induces apopto 95.8 0.0042 9.1E-08 66.2 1.8 82 30-117 435-520 (718)
187 PF15023 DUF4523: Protein of u 95.6 0.032 7E-07 48.9 6.1 76 36-119 83-162 (166)
188 PF10309 DUF2414: Protein of u 95.3 0.083 1.8E-06 39.9 6.8 54 322-382 6-62 (62)
189 PF10567 Nab6_mRNP_bdg: RNA-re 95.3 0.47 1E-05 47.1 13.7 184 217-400 14-232 (309)
190 KOG1996 mRNA splicing factor [ 95.0 0.065 1.4E-06 52.5 6.8 65 232-296 300-366 (378)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 94.7 0.024 5.2E-07 53.3 2.8 71 38-108 6-82 (176)
192 PF10309 DUF2414: Protein of u 94.0 0.21 4.5E-06 37.8 6.0 53 40-101 6-62 (62)
193 PF15023 DUF4523: Protein of u 93.8 0.21 4.5E-06 44.0 6.6 74 318-398 83-160 (166)
194 PF10567 Nab6_mRNP_bdg: RNA-re 93.8 0.8 1.7E-05 45.4 11.3 155 34-189 10-212 (309)
195 PF08675 RNA_bind: RNA binding 93.6 0.27 6E-06 39.2 6.3 53 323-383 11-63 (87)
196 PF08675 RNA_bind: RNA binding 93.1 0.38 8.2E-06 38.5 6.4 54 129-189 10-63 (87)
197 KOG2068 MOT2 transcription fac 93.0 0.041 8.8E-07 55.5 1.2 79 39-117 77-161 (327)
198 KOG2591 c-Mpl binding protein, 92.8 0.18 3.9E-06 53.9 5.5 71 36-113 172-246 (684)
199 KOG2135 Proteins containing th 92.7 0.058 1.3E-06 56.4 1.8 77 37-120 370-447 (526)
200 KOG2591 c-Mpl binding protein, 92.6 0.27 5.9E-06 52.5 6.6 67 127-199 175-245 (684)
201 PF04847 Calcipressin: Calcipr 92.5 0.28 6.2E-06 46.2 6.0 62 334-400 8-71 (184)
202 KOG4285 Mitotic phosphoprotein 92.5 0.48 1.1E-05 46.9 7.6 64 39-110 197-260 (350)
203 PF04847 Calcipressin: Calcipr 92.4 0.21 4.7E-06 47.1 5.0 61 52-118 8-70 (184)
204 PF07576 BRAP2: BRCA1-associat 92.2 0.89 1.9E-05 39.0 8.1 68 39-108 13-81 (110)
205 KOG4574 RNA-binding protein (c 91.7 0.079 1.7E-06 59.2 1.5 73 40-118 299-373 (1007)
206 KOG2068 MOT2 transcription fac 91.5 0.083 1.8E-06 53.3 1.2 79 323-401 79-164 (327)
207 PF07576 BRAP2: BRCA1-associat 91.1 1.3 2.9E-05 37.9 8.0 65 323-388 15-80 (110)
208 PF11767 SET_assoc: Histone ly 90.5 0.52 1.1E-05 36.3 4.5 54 49-111 10-63 (66)
209 KOG2318 Uncharacterized conser 90.4 1.3 2.8E-05 47.9 8.8 125 36-200 171-300 (650)
210 PF03467 Smg4_UPF3: Smg-4/UPF3 89.9 0.48 1E-05 44.5 4.8 69 320-388 6-81 (176)
211 KOG4574 RNA-binding protein (c 89.6 0.22 4.9E-06 55.8 2.6 74 323-401 300-375 (1007)
212 KOG4285 Mitotic phosphoprotein 89.4 0.68 1.5E-05 45.9 5.4 72 323-401 199-271 (350)
213 PF03880 DbpA: DbpA RNA bindin 89.1 1.7 3.6E-05 34.4 6.7 60 330-397 10-74 (74)
214 PHA03378 EBNA-3B; Provisional 86.6 11 0.00024 41.9 12.7 22 563-584 838-859 (991)
215 KOG2135 Proteins containing th 86.1 0.42 9.1E-06 50.3 1.9 71 323-399 374-445 (526)
216 KOG2253 U1 snRNP complex, subu 85.7 0.32 7E-06 53.3 0.9 112 36-156 37-164 (668)
217 KOG0804 Cytoplasmic Zn-finger 85.6 2.1 4.5E-05 45.1 6.6 75 39-115 74-152 (493)
218 KOG0804 Cytoplasmic Zn-finger 85.6 2 4.4E-05 45.2 6.5 69 127-196 74-143 (493)
219 KOG2253 U1 snRNP complex, subu 85.5 0.044 9.5E-07 59.8 -5.7 70 217-294 39-108 (668)
220 PF11767 SET_assoc: Histone ly 85.1 3.7 8.1E-05 31.6 6.2 56 331-394 10-65 (66)
221 PF14111 DUF4283: Domain of un 84.3 3.1 6.7E-05 37.9 6.7 115 41-161 17-139 (153)
222 PF07292 NID: Nmi/IFP 35 domai 84.2 0.69 1.5E-05 37.8 2.0 66 84-149 1-74 (88)
223 PF03880 DbpA: DbpA RNA bindin 83.5 2.6 5.6E-05 33.3 5.0 57 50-115 12-73 (74)
224 PF07292 NID: Nmi/IFP 35 domai 80.6 2.9 6.3E-05 34.2 4.3 70 171-240 1-74 (88)
225 KOG2318 Uncharacterized conser 77.8 6.6 0.00014 42.8 7.1 77 319-395 172-301 (650)
226 KOG2893 Zn finger protein [Gen 72.5 96 0.0021 30.0 15.8 13 362-374 48-60 (341)
227 KOG2236 Uncharacterized conser 70.4 31 0.00067 36.9 9.6 15 367-382 319-333 (483)
228 KOG4410 5-formyltetrahydrofola 66.4 23 0.00049 35.2 7.2 57 32-94 323-380 (396)
229 PF14111 DUF4283: Domain of un 66.2 4.8 0.0001 36.6 2.6 84 167-251 54-138 (153)
230 KOG4019 Calcineurin-mediated s 60.4 7.5 0.00016 36.0 2.6 74 322-400 11-90 (193)
231 PHA03378 EBNA-3B; Provisional 59.4 2.3E+02 0.005 32.1 13.9 20 566-585 821-840 (991)
232 KOG4019 Calcineurin-mediated s 57.8 4.3 9.3E-05 37.5 0.7 74 39-118 10-89 (193)
233 PRK14548 50S ribosomal protein 57.3 39 0.00085 27.4 6.0 58 323-382 22-81 (84)
234 COG5180 PBP1 Protein interacti 56.5 65 0.0014 34.4 8.9 9 65-73 49-57 (654)
235 KOG2891 Surface glycoprotein [ 56.5 21 0.00046 35.1 5.1 104 137-251 47-194 (445)
236 TIGR03636 L23_arch archaeal ri 54.5 50 0.0011 26.3 6.1 58 323-382 15-74 (77)
237 PRK14548 50S ribosomal protein 53.4 45 0.00097 27.1 5.7 58 41-101 22-81 (84)
238 KOG4410 5-formyltetrahydrofola 51.3 27 0.00058 34.6 4.9 47 128-178 331-377 (396)
239 PF07530 PRE_C2HC: Associated 49.8 36 0.00078 26.4 4.6 62 54-118 2-64 (68)
240 smart00596 PRE_C2HC PRE_C2HC d 49.6 33 0.00071 26.6 4.1 61 54-117 2-63 (69)
241 PF15513 DUF4651: Domain of un 49.3 31 0.00068 26.0 3.9 22 336-357 9-30 (62)
242 TIGR02542 B_forsyth_147 Bacter 46.3 36 0.00078 29.0 4.3 109 46-178 10-129 (145)
243 KOG1295 Nonsense-mediated deca 46.1 16 0.00034 38.0 2.7 68 39-106 7-77 (376)
244 KOG0307 Vesicle coat complex C 45.7 6.2E+02 0.013 30.6 15.6 14 613-626 1011-1024(1049)
245 PF03468 XS: XS domain; Inter 44.3 27 0.00058 30.3 3.4 39 139-179 29-67 (116)
246 TIGR03636 L23_arch archaeal ri 43.8 82 0.0018 25.1 5.8 58 41-101 15-74 (77)
247 PF03468 XS: XS domain; Inter 40.4 32 0.0007 29.8 3.4 41 51-94 29-69 (116)
248 KOG4368 Predicted RNA binding 39.7 4.6E+02 0.0099 29.2 12.2 13 566-578 492-504 (757)
249 COG5638 Uncharacterized conser 39.5 65 0.0014 33.7 5.7 39 36-74 143-186 (622)
250 PRK10905 cell division protein 38.0 55 0.0012 33.4 5.0 60 40-103 248-308 (328)
251 KOG4483 Uncharacterized conser 37.0 43 0.00093 35.0 4.0 58 39-104 391-449 (528)
252 PRK11901 hypothetical protein; 36.6 1.1E+02 0.0023 31.5 6.8 62 39-104 245-307 (327)
253 KOG2295 C2H2 Zn-finger protein 36.2 6.6 0.00014 42.5 -1.9 68 128-195 232-300 (648)
254 KOG2236 Uncharacterized conser 34.6 1E+02 0.0022 33.1 6.5 12 261-272 261-272 (483)
255 KOG2375 Protein interacting wi 33.5 2.7E+02 0.0059 32.2 9.9 6 264-269 297-302 (756)
256 PF15513 DUF4651: Domain of un 33.1 78 0.0017 24.0 3.8 35 233-267 9-43 (62)
257 KOG2295 C2H2 Zn-finger protein 30.5 9 0.00019 41.5 -2.0 74 38-111 230-303 (648)
258 KOG4483 Uncharacterized conser 29.9 1.1E+02 0.0024 32.1 5.6 54 322-381 392-446 (528)
259 KOG2891 Surface glycoprotein [ 27.1 64 0.0014 31.9 3.3 35 322-356 150-196 (445)
260 COG5638 Uncharacterized conser 24.4 1.6E+02 0.0035 30.9 5.7 40 318-357 143-187 (622)
261 KOG4274 Positive cofactor 2 (P 23.8 4.1E+02 0.0088 29.5 8.7 24 586-609 373-398 (742)
262 KOG4365 Uncharacterized conser 23.1 17 0.00037 38.2 -1.4 81 323-404 5-86 (572)
263 PF11411 DNA_ligase_IV: DNA li 22.3 66 0.0014 21.5 1.6 17 49-65 19-35 (36)
264 PTZ00191 60S ribosomal protein 22.3 2.9E+02 0.0063 24.9 6.2 57 323-381 83-141 (145)
265 KOG1676 K-homology type RNA bi 22.3 7.7E+02 0.017 27.7 10.6 20 232-253 249-268 (600)
266 cd04904 ACT_AAAH ACT domain of 22.2 3.2E+02 0.007 21.2 6.0 51 52-103 13-65 (74)
267 cd04880 ACT_AAAH-PDT-like ACT 21.8 2.6E+02 0.0057 21.5 5.5 51 51-102 11-65 (75)
268 PRK11230 glycolate oxidase sub 20.7 2.3E+02 0.0051 31.5 6.6 65 335-401 203-271 (499)
269 KOG4213 RNA-binding protein La 20.2 86 0.0019 29.2 2.5 71 40-115 112-183 (205)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.9e-97 Score=832.69 Aligned_cols=553 Identities=56% Similarity=0.909 Sum_probs=434.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccccC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~ 119 (650)
++|||+|||.++||++|+++|++||+|.+|+||+|..|++|+|||||+|.+.+||++|++.||+..|+|++|+|+|+.++
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeE
Q 006316 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199 (650)
Q Consensus 120 ~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 199 (650)
+..+..+.++|||+||+.++++++|+++|+.||.|.+|++..+.+|+++|||||+|++.++|.+|++.+||..++++.|+
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHH
Q 006316 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279 (650)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l 279 (650)
|..+..+.++. ......+++|||+||+.++++++|+++|++||.|.++.++.+.+|+++|||||+|.+.++|.+|++.+
T Consensus 161 v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 161 VGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred Eeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 98887766654 22345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccC----CeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEee
Q 006316 280 NGKKFD----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMR 355 (650)
Q Consensus 280 ~g~~~~----g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~ 355 (650)
++..+. ++.+++.+++++.++..++....+....+......+++|||+||++++|+++|+++|++||.|++++++.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 999999 9999999999999888887777776666666677889999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHHHHHhc--cccCCCCCCCCCCCCCCCCCCCCCCC
Q 006316 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL--QFSQMRPPVGPRMPMYPPVAPGLGQQ 433 (650)
Q Consensus 356 ~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r~~~~--~~~~~~~~~~~~~~~~pp~~~~~~~~ 433 (650)
+.+|.++|||||+|.+.++|.+|+++|||+.++|++|+|.++++++.|+..+ ++.+..+.. +..++..+..+.++++
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q~~~~~-~~~~~~~p~~~~~~~p 398 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQLQPRM-RQLPMGSPMGGAMGQP 398 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHHhhhhc-cCCCCCCCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999887765 333322111 1111111111111222
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC--CCCCCCC
Q 006316 434 LFYGQGPP-IIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP--RGRIYRY 510 (650)
Q Consensus 434 ~~~~~~p~-~~pp~~~~~~~~~~~p~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 510 (650)
.++++++. +++++| +++ +++. +++.++ +++++. .+.+..++.+++ +.+.+.++..+ ..+.+++
T Consensus 399 ~~~~~~~~~~~~~~p-~~~-----~~~~---~~~~~~-~~~~~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 464 (562)
T TIGR01628 399 PYYGQGPQQQFNGQP-LGW-----PRMS---MMPTPM-GPGGPL---RPNGLAPMNAVR-APSRNAQNAAQKPPMQPVMY 464 (562)
T ss_pred CccCCCCcccCCCCC-CCC-----CCCC---CCCCCC-CCCCCC---CCCCCCCCCcCC-CCCcccccccccccCCCcCC
Confidence 22222211 111111 011 0000 000000 000000 000000000000 00000000000 0011112
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCccccchhhhhhcCChHHHHHHhhhcchhhhhccCCCCccchh
Q 006316 511 PPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVT 590 (650)
Q Consensus 511 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kit 590 (650)
+++... . +.+ .++++++++..++++.++++++|+++++++||+||||+|||+|++++|++|+|||
T Consensus 465 ~p~~~~--~----------~~~---~~~~~~~~~~~~~~~~~~~~~~la~~~p~~q~~~lg~~~~~~~~~~~~~~~~~~t 529 (562)
T TIGR01628 465 PPNYQS--L----------PLS---QDLPQPQSTASQGGQNKKLAQVLASATPQMQKQVLGERLFPLVEAIEPALAAKIT 529 (562)
T ss_pred CccccC--C----------CCC---cccccccCCccccccchhHHHHHhhCCHHHHHHHHHHHhHHHHHhhChhhcCcce
Confidence 221000 0 000 0011111122334456789999999999999999999999999999999999999
Q ss_pred hhccCCChHHHHHhcCChHHHHHHHHHHHHHHH
Q 006316 591 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 623 (650)
Q Consensus 591 gm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~ 623 (650)
|||||||++||||||||+|+|++||+||++||+
T Consensus 530 gm~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (562)
T TIGR01628 530 GMLLEMDNSELLHLLESPELLKSKVDEALEVLK 562 (562)
T ss_pred EEEecCCHHHHHHHhcCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999994
No 2
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-60 Score=488.91 Aligned_cols=353 Identities=64% Similarity=1.024 Sum_probs=337.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccccC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~ 119 (650)
.+|||| +++||.+|+++|+.+|+|++|+||||. | |+|||||+|.+++||++|++++|+..|+|++|||||+.+|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 589999 999999999999999999999999998 7 9999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeE
Q 006316 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199 (650)
Q Consensus 120 ~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 199 (650)
++. |||+||++++|.++|+++|+.||+|++|++.++.+| ++|| ||+|+++++|++|++.+||..+++++|+
T Consensus 76 ~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 887 999999999999999999999999999999999999 9999 9999999999999999999999999999
Q ss_pred Ecccccccccccccc--cccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHH
Q 006316 200 VGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277 (650)
Q Consensus 200 v~~~~~~~~~~~~~~--~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~ 277 (650)
|+.+..+.++..... ....++++++|++.+++++.|.++|..+|.|.++.++.+..|++++|+||.|+++++|..|+.
T Consensus 147 vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred EeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 999998887754333 467899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 006316 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357 (650)
Q Consensus 278 ~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~ 357 (650)
.+++..+.+..++|.+++++.++...+...+..............+|||+|++..++++.|+++|+.||+|++++|+.+.
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 99999999999999999999999999998888877777778889999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHHHHHhc
Q 006316 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL 407 (650)
Q Consensus 358 ~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r~~~~ 407 (650)
.|+++||+||+|.+.++|.+|+..+|+..+.+++|+|.++++++.++.++
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~ 356 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARL 356 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhh
Confidence 99999999999999999999999999999999999999999888776655
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.9e-49 Score=430.29 Aligned_cols=349 Identities=21% Similarity=0.268 Sum_probs=280.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccc--cCccCCCCcccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL--NFTPLNGKPIRIMY 115 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~l--n~~~i~g~~i~v~~ 115 (650)
+|+.|||+|||+++||++|+++|+.||+|.+|+++++ +|||||+|.+.++|++|++.+ ++..|.|++|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5789999999999999999999999999999999864 369999999999999999864 67889999999999
Q ss_pred cccCccccc----------CCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHH
Q 006316 116 SYRDPTIRK----------SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185 (650)
Q Consensus 116 s~~~~~~~~----------~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai 185 (650)
+......+. ....+|||+||+.++++++|+++|+.||.|.+|++.++. .+++|||+|.+.++|.+|+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAK 151 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHH
Confidence 865431111 123479999999999999999999999999999988753 2468999999999999999
Q ss_pred HhhCCceecC--eeeEEccccccc--------------------ccc-----------cc--------------------
Q 006316 186 DKLNGMLLND--KQVFVGPFLRKQ--------------------ERE-----------ST-------------------- 212 (650)
Q Consensus 186 ~~lng~~i~g--~~l~v~~~~~~~--------------------~~~-----------~~-------------------- 212 (650)
+.|||..|.+ +.|.|.++.... ++. ..
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGP 231 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCC
Confidence 9999999965 355554432110 000 00
Q ss_pred --------------------------------------cccccccceeccCCCC-CCCHHHHHHHhcccCceeEEEEEeC
Q 006316 213 --------------------------------------ADKTRFNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRD 253 (650)
Q Consensus 213 --------------------------------------~~~~~~~~l~V~nlp~-~~t~e~l~~~F~~~G~i~~~~v~~~ 253 (650)
......++|||+||+. .+++++|+++|+.||.|.+++++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 232 LAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 0001335899999997 6999999999999999999999986
Q ss_pred CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHH---HHh------hhhhhhhhhh---------
Q 006316 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM---ELK------GKFEQSLKET--------- 315 (650)
Q Consensus 254 ~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~---~~~------~~~~~~~~~~--------- 315 (650)
.+|||||+|.+.++|..|+..||+..+.|+.|.|.++........ .+. ..+......+
T Consensus 312 ----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~ 387 (481)
T TIGR01649 312 ----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANK 387 (481)
T ss_pred ----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccc
Confidence 368999999999999999999999999999999998755321100 000 0000000000
Q ss_pred -hhccCCceeEEecCCCCCCHHHHHHHHhhcCC--eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCee-
Q 006316 316 -ADKFEGLNLYVKNLDDSISDDKLKELFSEFGT--ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP- 391 (650)
Q Consensus 316 -~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~--i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~- 391 (650)
....++.+|||+|||.++|+++|+++|+.||. |+.++++.+.++ ++|+|||+|.+.++|.+|+..|||+.++++.
T Consensus 388 ~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~ 466 (481)
T TIGR01649 388 NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNG 466 (481)
T ss_pred cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCC
Confidence 01135678999999999999999999999998 899998876544 5889999999999999999999999999885
Q ss_pred -----EEEEecchh
Q 006316 392 -----LYVALAQRK 400 (650)
Q Consensus 392 -----l~V~~a~~~ 400 (650)
|+|+|++++
T Consensus 467 ~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 467 SAPYHLKVSFSTSR 480 (481)
T ss_pred CccceEEEEeccCC
Confidence 999998753
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.3e-44 Score=377.76 Aligned_cols=344 Identities=24% Similarity=0.404 Sum_probs=234.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
+.++|||+|||.++||++|+++|+.||+|.+|+|++|+.+++|+|||||+|.+.+||++|++.||+..|.|++|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCe
Q 006316 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (650)
Q Consensus 118 ~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~ 196 (650)
.... ....++|||+|||.++++++|+++|+.||.|..+.+..+ ..+.++|||||+|++.++|.+|++.|||..+.|+
T Consensus 82 ~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4332 224568999999999999999999999999999999888 4678999999999999999999999999988774
Q ss_pred --eeEEcccccccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCCh-hhHH
Q 006316 197 --QVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP-DDAA 273 (650)
Q Consensus 197 --~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~-~~A~ 273 (650)
.+.+.+........... +...+......... . ...+.+. .....+ +...+...+... ....
T Consensus 160 ~~~i~v~~a~~~~~~~~~~--------~~~~~~~~~~~~~~-~--~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~ 223 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKG--------LLSQLEAVQNPQTT-R--VPLSTIL----TAAGIG-PMHHAAARFRPSAGDFT 223 (352)
T ss_pred ceeEEEEECCCCCcCCchh--------cCchhhcccCcccC-C--CCccccc----cccCCC-CccCcccccccCcchhh
Confidence 45665443322111000 00000000000000 0 0000000 000000 000000000000 0000
Q ss_pred HHH-HHHcCCccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEE
Q 006316 274 RSV-EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352 (650)
Q Consensus 274 ~Ai-~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~ 352 (650)
... .......+... .............. ................+.+|||+||++++++++|+++|++||.|++++
T Consensus 224 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~ 300 (352)
T TIGR01661 224 AVLAHQQQQHAVAQQ--HAAQRASPPATDGQ-TAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVK 300 (352)
T ss_pred hhhhhhhhhcccccc--cccccCCCcccccc-ccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE
Confidence 000 00000000000 00000000000000 000000000011123456899999999999999999999999999999
Q ss_pred EeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHH
Q 006316 353 VMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402 (650)
Q Consensus 353 i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~ 402 (650)
|+.+. +|.++|||||+|.+.++|.+|+..|||..++||.|+|.|+..++.
T Consensus 301 i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 301 IIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99998 899999999999999999999999999999999999999987753
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.2e-40 Score=373.67 Aligned_cols=266 Identities=35% Similarity=0.630 Sum_probs=238.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~ 118 (650)
...|||+|||.++++++|+++|+.||.|++|+|.+| .+++++|||||.|.+.++|++|+++||+..+.|+.|+|.+...
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 467999999999999999999999999999999998 5788999999999999999999999999999999999976543
Q ss_pred Cccc---ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceec-
Q 006316 119 DPTI---RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN- 194 (650)
Q Consensus 119 ~~~~---~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~- 194 (650)
.... .....++|||+||+.++++++|+++|+.||.|.++.+..+.+|.++|||||+|++.++|.+|++.|||..+.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 3222 334557899999999999999999999999999999999988999999999999999999999999999999
Q ss_pred ---CeeeEEcccccccccccc------------cccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcc
Q 006316 195 ---DKQVFVGPFLRKQEREST------------ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259 (650)
Q Consensus 195 ---g~~l~v~~~~~~~~~~~~------------~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~sr 259 (650)
|+.+.|.....+.++... ......++|||+||+..+++++|+++|++||.|.+++++.+.+|+++
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~ 326 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSR 326 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcC
Confidence 999999887666554211 11234578999999999999999999999999999999999889999
Q ss_pred eeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHHHHh
Q 006316 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305 (650)
Q Consensus 260 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 305 (650)
|||||+|.+.++|.+|+..+|+..+.|+.|.|.+++.+..+...+.
T Consensus 327 g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~ 372 (562)
T TIGR01628 327 GFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQ 372 (562)
T ss_pred CeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHH
Confidence 9999999999999999999999999999999999998776655433
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=330.32 Aligned_cols=250 Identities=26% Similarity=0.413 Sum_probs=221.3
Q ss_pred CCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCcee-cCeeeEEcc
Q 006316 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLL-NDKQVFVGP 202 (650)
Q Consensus 125 ~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i-~g~~l~v~~ 202 (650)
...+.|||+.||.++.+++|..+|++.|.|.+++++.| .+|.++|||||.|++.++|++||+.||+.+| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 34578999999999999999999999999999999999 7899999999999999999999999999988 588888876
Q ss_pred cccccccccccccccccceeccCCCCCCCHHHHHHHhcccCc-eeEEEEEeCC--CCCcceeEEEEeCChhhHHHHHHHH
Q 006316 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI-ITSTAVMRDA--DGKSKCFGFVNFDDPDDAARSVEAL 279 (650)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~-i~~~~v~~~~--~g~srg~afV~f~~~~~A~~Ai~~l 279 (650)
+.. .++|||+|+|+.+++|+|.+.|++.++ |.+|.+..+. ..++||||||+|+++.+|..|..+|
T Consensus 161 Sva------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 161 SVA------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred eee------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 543 378999999999999999999999886 7888887764 4679999999999999999999888
Q ss_pred cCC--ccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 006316 280 NGK--KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357 (650)
Q Consensus 280 ~g~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~ 357 (650)
-.. ++.|..+.|.||....+...+... .-..|||+||+.++|+|.|+++|++||.|+.|+.++|
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~ded~ms-------------~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD- 294 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDEDTMS-------------KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD- 294 (506)
T ss_pred cCCceeecCCcceeeccCcccCCChhhhh-------------heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-
Confidence 654 467999999999887654433211 2237999999999999999999999999999999988
Q ss_pred CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHHHHHh
Q 006316 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406 (650)
Q Consensus 358 ~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r~~~ 406 (650)
||||+|.++++|.+|++++||+.|+|..|.|.+|++...++..
T Consensus 295 ------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 295 ------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred ------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 9999999999999999999999999999999999987765543
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=300.74 Aligned_cols=311 Identities=29% Similarity=0.467 Sum_probs=234.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
....+.|.|.-||.++|++||+.+|+.+|.|.||+++||+.|+.|+||+||+|.+++||++|+..||+..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceec
Q 006316 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (650)
Q Consensus 116 s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~ 194 (650)
+... .......+|||.+||+.++.+||.++|+.||.|..-++..| .+|.++|.+||.|...++|+.||+.|||..-.
T Consensus 118 ARPS--s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~ 195 (360)
T KOG0145|consen 118 ARPS--SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS 195 (360)
T ss_pred ccCC--hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC
Confidence 7644 33445678999999999999999999999999888888888 78999999999999999999999999998755
Q ss_pred Ce--eeEEcccccccccccccccccccceeccCCCC-CCCHHHHHHHhc----ccCc-eeEEEEEeCCCCCcceeEEEEe
Q 006316 195 DK--QVFVGPFLRKQERESTADKTRFNNVYVKNLSE-TTTEDDLKKIFG----EFGI-ITSTAVMRDADGKSKCFGFVNF 266 (650)
Q Consensus 195 g~--~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~-~~t~e~l~~~F~----~~G~-i~~~~v~~~~~g~srg~afV~f 266 (650)
|. .|.|..+ |-|. ..+..-|..+|. +|+. +..... + |-+=..
T Consensus 196 g~tepItVKFa---------------------nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~------r---~r~~~~ 245 (360)
T KOG0145|consen 196 GCTEPITVKFA---------------------NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQ------R---FRLDNL 245 (360)
T ss_pred CCCCCeEEEec---------------------CCcccccchhhhHHhhcCccccCCCcccchhh------h---hccccc
Confidence 43 2333222 2221 112222223321 1211 110000 0 000000
Q ss_pred CChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcC
Q 006316 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346 (650)
Q Consensus 267 ~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 346 (650)
... ..++..+....+++..-.+..- -......+.+|||-||..+.+|.-|.++|.+||
T Consensus 246 ~~~---~~~~~rfsP~~~d~m~~l~~~~-------------------lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFG 303 (360)
T KOG0145|consen 246 LNP---HAAQARFSPMTIDGMSGLAGVN-------------------LPGGPGGGWCIFVYNLSPDADESILWQLFGPFG 303 (360)
T ss_pred cch---hhhhccCCCccccccceeeeec-------------------cCCCCCCeeEEEEEecCCCchHhHHHHHhCccc
Confidence 011 1111111111111111111000 001123467999999999999999999999999
Q ss_pred CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchh
Q 006316 347 TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 347 ~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
.|..|+|++|- +.+++|||||++.+.+||..||..|||+.+++|.|.|+|...+
T Consensus 304 Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 304 AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999998 4899999999999999999999999999999999999997654
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3.2e-39 Score=349.08 Aligned_cols=296 Identities=22% Similarity=0.338 Sum_probs=241.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCC-CCcccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN-GKPIRIMY 115 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~-g~~i~v~~ 115 (650)
...++|||+|||.+++|++|+++|++||+|.+|+|++| .+++|+|||||+|.+.++|++|++.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34699999999999999999999999999999999999 89999999999999999999999999988875 78888876
Q ss_pred cccCcccccCCCceeEecCCCcccchHHHHhhhcccCc-eeEEEEeeC--CCCCcccEEEEEECCHHHHHHHHHhhCC--
Q 006316 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN-ILSCKVATD--SLGQSRGYGFVQFDNEESAKSAIDKLNG-- 190 (650)
Q Consensus 116 s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~-I~~~~v~~d--~~g~skg~afV~F~~~e~A~~Ai~~lng-- 190 (650)
+. ..++|||+|||.++++++|++.|+.++. +.++.+... ..++++|||||+|+++++|..|++.|+.
T Consensus 135 S~--------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 135 SV--------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred cc--------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 64 2478999999999999999999999974 444444332 3467899999999999999999998864
Q ss_pred ceecCeeeEEcccccccccccccccccccceeccCCCCCCCHHHHHHHhccc--CceeEEEEEeCCCCCcceeEEEEeCC
Q 006316 191 MLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF--GIITSTAVMRDADGKSKCFGFVNFDD 268 (650)
Q Consensus 191 ~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~--G~i~~~~v~~~~~g~srg~afV~f~~ 268 (650)
..+.|+.|.|.+.....+... ......++|||+||+.++++++|+++|++| |.|.++.+++ +||||+|.+
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~-~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s 278 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDE-DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFED 278 (578)
T ss_pred eEecCceEEEEeecccccccc-cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCC
Confidence 467899999988765443221 122345789999999999999999999999 9999998764 599999999
Q ss_pred hhhHHHHHHHHcCCccCCeeEEEecchhhhHHHHHH-h----hh-----hhhhhhhhhhccCCceeEEecCCCCCCHHHH
Q 006316 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL-K----GK-----FEQSLKETADKFEGLNLYVKNLDDSISDDKL 338 (650)
Q Consensus 269 ~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~-~----~~-----~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 338 (650)
.++|.+|++.||+..|.|+.|.|.++.........- . .. .........-.....+++++|+++..+++-+
T Consensus 279 ~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~ 358 (578)
T TIGR01648 279 REDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPS 358 (578)
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccch
Confidence 999999999999999999999999997643221000 0 00 0000001111234678999999999999999
Q ss_pred HHHHhhcCCeE
Q 006316 339 KELFSEFGTIT 349 (650)
Q Consensus 339 ~~~F~~~G~i~ 349 (650)
.++|..+|.|.
T Consensus 359 ~~~f~~~g~~~ 369 (578)
T TIGR01648 359 LHFPRMPGPIR 369 (578)
T ss_pred hhccccCcccc
Confidence 99999998753
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=8.7e-38 Score=337.91 Aligned_cols=281 Identities=24% Similarity=0.337 Sum_probs=225.9
Q ss_pred chhHHHHHcccccCccCCCCcccccccccCc---ccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCC
Q 006316 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDP---TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ 166 (650)
Q Consensus 90 ~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~~---~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~ 166 (650)
..++|.+|+.++++..+........+....+ .......++|||+|||.++++++|+++|+.||.|.+|+|+.|.+|.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 3678888888777655443322222221110 1112235799999999999999999999999999999999998899
Q ss_pred cccEEEEEECCHHHHHHHHHhhCCceec-CeeeEEcccccccccccccccccccceeccCCCCCCCHHHHHHHhcccCc-
Q 006316 167 SRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI- 244 (650)
Q Consensus 167 skg~afV~F~~~e~A~~Ai~~lng~~i~-g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~- 244 (650)
++|||||+|.+.++|++||+.||+..+. ++.+.|.... ..++|||+|||.++++++|.+.|++++.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~------------~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV------------DNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc------------cCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 9999999999999999999999999885 6666664332 2468999999999999999999999864
Q ss_pred eeEEEEEeC--CCCCcceeEEEEeCChhhHHHHHHHHcC--CccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccC
Q 006316 245 ITSTAVMRD--ADGKSKCFGFVNFDDPDDAARSVEALNG--KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320 (650)
Q Consensus 245 i~~~~v~~~--~~g~srg~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (650)
+.++.+... ..++++|||||+|.++++|..|++.|+. ..+.++.|.|.|+..+.+... .....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~-------------~~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE-------------DVMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc-------------ccccc
Confidence 444444332 3467899999999999999999998864 357899999999876432211 01123
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhc--CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEF--GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..+|||+||++++|+++|+++|++| |.|++|+++++ ||||+|.+.++|.+|+++||+..|+|+.|.|.|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-------YAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-------eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4589999999999999999999999 99999987754 99999999999999999999999999999999998
Q ss_pred hhHH
Q 006316 399 RKEE 402 (650)
Q Consensus 399 ~~~~ 402 (650)
+++.
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7643
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9e-37 Score=303.74 Aligned_cols=248 Identities=27% Similarity=0.456 Sum_probs=223.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccC-CCCccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL-NGKPIRIM 114 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i-~g~~i~v~ 114 (650)
....+.||||.||.++.|++|..+|.+.|+|.++|++.|+.++.++|||||.|.+.++|++|++.||+..| .|+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999887 58999998
Q ss_pred ccccCcccccCCCceeEecCCCcccchHHHHhhhcccCc-eeEEEEeeC--CCCCcccEEEEEECCHHHHHHHHHhhC-C
Q 006316 115 YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN-ILSCKVATD--SLGQSRGYGFVQFDNEESAKSAIDKLN-G 190 (650)
Q Consensus 115 ~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~-I~~~~v~~d--~~g~skg~afV~F~~~e~A~~Ai~~ln-g 190 (650)
.|..+ ++|||+|||++.++++|.+.|++.++ |++|.+..+ ...+++|||||+|+++..|..|..+|- +
T Consensus 160 ~Svan--------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 160 VSVAN--------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred Eeeec--------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 77644 88999999999999999999999985 778877776 446799999999999999999998873 3
Q ss_pred -ceecCeeeEEcccccccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCCh
Q 006316 191 -MLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269 (650)
Q Consensus 191 -~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~ 269 (650)
..++|..+.|.|+.+..+.... ....-..|||+||+.++|+|.|+++|++||.|..|+.++| ||||+|.+.
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR 303 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAER 303 (506)
T ss_pred ceeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecch
Confidence 4689999999999877665443 3445567999999999999999999999999999998866 999999999
Q ss_pred hhHHHHHHHHcCCccCCeeEEEecchhhhH
Q 006316 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYE 299 (650)
Q Consensus 270 ~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 299 (650)
++|.+|++.+|++.++|..|.|..|+...+
T Consensus 304 ~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 304 EDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred HHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 999999999999999999999999977543
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=306.58 Aligned_cols=343 Identities=26% Similarity=0.422 Sum_probs=273.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccccC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~ 119 (650)
.+|||++||++++.+.|.++||.+|+|..+.|+.++.++.++||+||.|.=.+|+++|+...++..|.|+.|+|..+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999876433
Q ss_pred cccc----------------------cCC--CceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEE
Q 006316 120 PTIR----------------------KSG--AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175 (650)
Q Consensus 120 ~~~~----------------------~~~--~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F 175 (650)
.... ... ..+|+|+|||..+...+|..+|+.||.|.++.|.+..+|+-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 2111 001 3579999999999999999999999999999999888888889999999
Q ss_pred CCHHHHHHHHHhhCCceecCeeeEEccccccccccccc---------------------c--------------------
Q 006316 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA---------------------D-------------------- 214 (650)
Q Consensus 176 ~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~---------------------~-------------------- 214 (650)
....+|..|++.+|+..|.|+.|-|.|+..+....... .
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 99999999999999999999999998876542211100 0
Q ss_pred c---------------------c----------------------cccceeccCCCCCCCHHHHHHHhcccCceeEEEEE
Q 006316 215 K---------------------T----------------------RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251 (650)
Q Consensus 215 ~---------------------~----------------------~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~ 251 (650)
+ . ...+|||.|||.++++++|.+.|++||.|..+.+.
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 0 00249999999999999999999999999999888
Q ss_pred eC-CCCCcceeEEEEeCChhhHHHHHHHHc-----C-CccCCeeEEEecchhhhHHHHH-Hhh-----------------
Q 006316 252 RD-ADGKSKCFGFVNFDDPDDAARSVEALN-----G-KKFDDKEWYVGKAQKKYEREME-LKG----------------- 306 (650)
Q Consensus 252 ~~-~~g~srg~afV~f~~~~~A~~Ai~~l~-----g-~~~~g~~l~v~~a~~~~~~~~~-~~~----------------- 306 (650)
.+ .++.++|+|||.|.+..+|..||.... + ..++|+.|.|..+-.+.+.... ...
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG 405 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREG 405 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccC
Confidence 77 579999999999999999999998762 2 4578999998887544332221 100
Q ss_pred ---------------------hhhhh----hhhhhhccCCceeEEecCCCCCCHHHHHHHHhh----c-CCe-EEEEEee
Q 006316 307 ---------------------KFEQS----LKETADKFEGLNLYVKNLDDSISDDKLKELFSE----F-GTI-TSCKVMR 355 (650)
Q Consensus 307 ---------------------~~~~~----~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~----~-G~i-~~~~i~~ 355 (650)
.+... .+...-....+.|.|.|||..++...|..+... | +.+ ..++.+.
T Consensus 406 ~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~ 485 (678)
T KOG0127|consen 406 LIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIK 485 (678)
T ss_pred ccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhh
Confidence 00000 001111123456889999999999999988753 2 222 2244444
Q ss_pred CC----CCCCcceEEEEcCCHHHHHHHHHHh
Q 006316 356 DP----NGISRGSGFVAFSTAEEASKALTEM 382 (650)
Q Consensus 356 ~~----~g~s~g~~fV~f~~~~~A~~A~~~l 382 (650)
.. .+.|.||+|+.|...+.|.+|+..+
T Consensus 486 ~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 486 FLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 32 4789999999999999999998865
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=8.9e-36 Score=322.38 Aligned_cols=169 Identities=22% Similarity=0.490 Sum_probs=154.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
..++|||+||+++++|++|+++|+.||+|.+|++++|+.|++++|||||+|.+.++|++|++.||+..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cCccc---------ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHh
Q 006316 118 RDPTI---------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187 (650)
Q Consensus 118 ~~~~~---------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~ 187 (650)
..+.. .....++|||+||+.++++++|+++|+.||.|.+|++.+| .+|.++|||||+|++.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 32211 1123468999999999999999999999999999999998 5678999999999999999999999
Q ss_pred hCCceecCeeeEEcccccc
Q 006316 188 LNGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 188 lng~~i~g~~l~v~~~~~~ 206 (650)
||+..|+|+.|+|.++...
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999887653
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=301.28 Aligned_cols=364 Identities=24% Similarity=0.371 Sum_probs=240.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCcc-CCC--Cccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNG--KPIR 112 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~-i~g--~~i~ 112 (650)
.....+||||-+|..++|+||+++|++||.|.+|.|.||+.|+.|+|||||.|.+.+||.+|+..|++.. |-| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3456899999999999999999999999999999999999999999999999999999999999987654 555 6788
Q ss_pred ccccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCce
Q 006316 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (650)
Q Consensus 113 v~~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (650)
|.+++.... +......|||+-|++.+++++++++|++||.|++|.|.+|..+.++|||||.|++.|.|..||+.|||..
T Consensus 111 vk~Ad~E~e-r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 111 VKYADGERE-RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ecccchhhh-ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 877764432 2245678999999999999999999999999999999999999999999999999999999999999864
Q ss_pred -ecC--eeeEEccccccccccccccc-------------ccccc------------------------eeccCCCC--CC
Q 006316 193 -LND--KQVFVGPFLRKQERESTADK-------------TRFNN------------------------VYVKNLSE--TT 230 (650)
Q Consensus 193 -i~g--~~l~v~~~~~~~~~~~~~~~-------------~~~~~------------------------l~V~nlp~--~~ 230 (650)
+.| ..|.|.++..++++..+... ..+.+ .-+++++. .+
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 454 56788777665554322210 00111 11111111 01
Q ss_pred CHHHHHHH-h-cccC-----ceeEEE--EEeCC---CCC--c--ceeEEEEe--CCh--hhHHHHHHHHcCCcc------
Q 006316 231 TEDDLKKI-F-GEFG-----IITSTA--VMRDA---DGK--S--KCFGFVNF--DDP--DDAARSVEALNGKKF------ 284 (650)
Q Consensus 231 t~e~l~~~-F-~~~G-----~i~~~~--v~~~~---~g~--s--rg~afV~f--~~~--~~A~~Ai~~l~g~~~------ 284 (650)
....+... + .... ...+.. ..+.. .+. + ..++.-.- .+. -.-.-++..+-+...
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence 11111110 0 0000 000000 00000 000 0 00000000 000 000001111111000
Q ss_pred --CCeeEEEecc------h----hhhHHHH--HHh------------------------hhhhhhhhhhhhccCCceeEE
Q 006316 285 --DDKEWYVGKA------Q----KKYEREM--ELK------------------------GKFEQSLKETADKFEGLNLYV 326 (650)
Q Consensus 285 --~g~~l~v~~a------~----~~~~~~~--~~~------------------------~~~~~~~~~~~~~~~~~~l~V 326 (650)
.+-......+ + ...+... ... ...........+...|.+|||
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfi 429 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFI 429 (510)
T ss_pred ccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceee
Confidence 0000000000 0 0000000 000 000001112234567889999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchh
Q 006316 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 327 ~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
.+||.+.-+.+|-..|..||.|.+.+++.|+ +|.|++|+||.|++..+|.+||..|||..+++++|+|.+...+
T Consensus 430 yhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 430 YHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred eeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 9999999999999999999999999999887 8999999999999999999999999999999999999987654
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.3e-35 Score=322.30 Aligned_cols=342 Identities=23% Similarity=0.313 Sum_probs=232.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..+.++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|+ .|++..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 345789999999999999999999999999999999999999999999999999999999999 5899999999999987
Q ss_pred cccCccc----------ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHH
Q 006316 116 SYRDPTI----------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184 (650)
Q Consensus 116 s~~~~~~----------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~A 184 (650)
+...... ......+|||+||+.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6432111 1122578999999999999999999999999999999998 4568999999999999999999
Q ss_pred HHhhCCceecCeeeEEccccccccccccccc-ccccc-eeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeE
Q 006316 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADK-TRFNN-VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262 (650)
Q Consensus 185 i~~lng~~i~g~~l~v~~~~~~~~~~~~~~~-~~~~~-l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~a 262 (650)
++.|||..|.|+.|.|.++............ ..... -..+..........+...+...+......+. ... .....
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~ 321 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIP-GTG--SKIAL 321 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCC-Ccc--chhhh
Confidence 9999999999999999887533222111000 00000 0000000111222222222222211000000 000 00000
Q ss_pred EEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHHHHhhhhhh-hhhhhhhccCCceeEEecCCCCCC-------
Q 006316 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ-SLKETADKFEGLNLYVKNLDDSIS------- 334 (650)
Q Consensus 263 fV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~V~nl~~~~t------- 334 (650)
+..+.. ............+.. .+...... ..........+.+|+|.||....+
T Consensus 322 ~~~~~~-------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~ 382 (457)
T TIGR01622 322 MQKLQR-------------DGIIDPNIPSRYATG------ALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFD 382 (457)
T ss_pred hccccc-------------ccccccccccccccc------ccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHH
Confidence 000000 000000000000000 00000000 000000124567899999965554
Q ss_pred ---HHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHHH
Q 006316 335 ---DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403 (650)
Q Consensus 335 ---~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r 403 (650)
.+||+++|++||.|++|.|... .+.|++||+|.+.++|.+|++.|||+.++|+.|.|.|.....-.
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~ 451 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYD 451 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHH
Confidence 3789999999999999998743 35789999999999999999999999999999999998776543
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.1e-35 Score=320.69 Aligned_cols=263 Identities=21% Similarity=0.331 Sum_probs=210.2
Q ss_pred CceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhh--CCceecCeeeEEcccc
Q 006316 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL--NGMLLNDKQVFVGPFL 204 (650)
Q Consensus 127 ~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~l--ng~~i~g~~l~v~~~~ 204 (650)
++.|||+|||.++++++|+++|+.||.|.+|++++ +++||||+|++.++|.+|++.+ ++..+.|+.|+|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 46799999999999999999999999999999885 5789999999999999999864 7889999999999876
Q ss_pred cccccccc------cccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHH
Q 006316 205 RKQEREST------ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278 (650)
Q Consensus 205 ~~~~~~~~------~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~ 278 (650)
.+...... .......+|+|+||+.++++++|+++|++||.|.++.++++. .+++|||+|.+.++|.+|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHHH
Confidence 54322111 111234579999999999999999999999999999998763 247999999999999999999
Q ss_pred HcCCccCC--eeEEEecchh----------hh----------HHHHHHhhhhhhhhh-----------------------
Q 006316 279 LNGKKFDD--KEWYVGKAQK----------KY----------EREMELKGKFEQSLK----------------------- 313 (650)
Q Consensus 279 l~g~~~~g--~~l~v~~a~~----------~~----------~~~~~~~~~~~~~~~----------------------- 313 (650)
|||..+.+ ..|.|.++.. +. ++...+.........
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999865 3566666542 11 000000000000000
Q ss_pred ----------------------------------hhhhccCCceeEEecCCC-CCCHHHHHHHHhhcCCeEEEEEeeCCC
Q 006316 314 ----------------------------------ETADKFEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPN 358 (650)
Q Consensus 314 ----------------------------------~~~~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~~ 358 (650)
.......+++|||+||++ .+|+++|+++|+.||.|.+|+|+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-- 311 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-- 311 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--
Confidence 000023567999999997 6999999999999999999999987
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhH
Q 006316 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 359 g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
.+|||||+|.+.++|.+|+..|||..+.|+.|+|.+++.+.
T Consensus 312 --~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 312 --KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred --CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 36899999999999999999999999999999999976543
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-35 Score=275.85 Aligned_cols=234 Identities=24% Similarity=0.451 Sum_probs=196.1
Q ss_pred CCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccc
Q 006316 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205 (650)
Q Consensus 126 ~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 205 (650)
..++|||+||+.+++++-|..+|++.|.|.+|+++.|+ +.|.+...
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e----------------------------------~~v~wa~~ 50 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------------------------LKVNWATA 50 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhh----------------------------------hccccccC
Confidence 34689999999999999999999999999999998762 22222222
Q ss_pred ccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCcc
Q 006316 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284 (650)
Q Consensus 206 ~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~ 284 (650)
.. ..+.......-.+||+.|...++.|+|++.|.+||+|.+++|++| .+++||||+||.|.+.++|+.||..|||..+
T Consensus 51 p~-nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 51 PG-NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred cc-cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 21 111111112345999999999999999999999999999999999 6799999999999999999999999999999
Q ss_pred CCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcce
Q 006316 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364 (650)
Q Consensus 285 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~ 364 (650)
.++.++..|+.+|..+.......+++... ......|+|||+|++..+||++||+.|+.||.|.+|+|+++ +||
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~N--Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGY 202 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYN--QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGY 202 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhc--cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cce
Confidence 99999999999887443333333443332 23456789999999999999999999999999999999998 679
Q ss_pred EEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhH
Q 006316 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 365 ~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
+||.|++.|.|.+||..+||..|+|..+++.|.+...
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 9999999999999999999999999999999987544
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-34 Score=267.03 Aligned_cols=220 Identities=30% Similarity=0.512 Sum_probs=192.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
...++|||+||..+|||+.|..||+++|+|++++|+.| .++|.|.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNWA 48 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhccccc
Confidence 34589999999999999999999999999999999876 4555554
Q ss_pred ccCcccccC---CCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCce
Q 006316 117 YRDPTIRKS---GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (650)
Q Consensus 117 ~~~~~~~~~---~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (650)
.......+. ..-.|||+.|...|+.+.|++.|..||+|.+++|++| .+++||||+||.|-+.++|++||..+||.-
T Consensus 49 ~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 49 TAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW 128 (321)
T ss_pred cCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee
Confidence 432111111 1346999999999999999999999999999999999 789999999999999999999999999999
Q ss_pred ecCeeeEEcccccccccccccc----------cccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeE
Q 006316 193 LNDKQVFVGPFLRKQERESTAD----------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262 (650)
Q Consensus 193 i~g~~l~v~~~~~~~~~~~~~~----------~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~a 262 (650)
|.++.|+-.|+.++..+..... ....++||++|++.-++++++++.|+.||.|..+.+.++ +||+
T Consensus 129 lG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYa 203 (321)
T KOG0148|consen 129 LGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYA 203 (321)
T ss_pred eccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceE
Confidence 9999999999988764432211 345578999999999999999999999999999999987 7899
Q ss_pred EEEeCChhhHHHHHHHHcCCccCCeeEEEecchh
Q 006316 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 263 fV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 296 (650)
||.|+++|+|.+||..+|+..+.|..+.+.|.+.
T Consensus 204 FVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 204 FVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred EEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 9999999999999999999999999999998865
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.5e-32 Score=305.55 Aligned_cols=256 Identities=20% Similarity=0.342 Sum_probs=206.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcC------------CCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQM------------GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~------------G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~l 101 (650)
......++|||||||+++|+++|+++|+.+ ++|.++.+. +++|||||+|.+.++|..|| .|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-cC
Confidence 344567999999999999999999999974 355555554 44689999999999999999 69
Q ss_pred cCccCCCCcccccccccCcc---------------------------cccCCCceeEecCCCcccchHHHHhhhcccCce
Q 006316 102 NFTPLNGKPIRIMYSYRDPT---------------------------IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154 (650)
Q Consensus 102 n~~~i~g~~i~v~~s~~~~~---------------------------~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I 154 (650)
|+..|.|+.|+|.+...... .......+|||+|||..+++++|+++|+.||.|
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 99999999999975432110 011224689999999999999999999999999
Q ss_pred eEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccccccccccc--------------------
Q 006316 155 LSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA-------------------- 213 (650)
Q Consensus 155 ~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~-------------------- 213 (650)
..+.+..+ .+|.++|||||+|.+.++|..|++.|||..|.|+.|.|.++..........
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 99999988 678999999999999999999999999999999999997764321110000
Q ss_pred --ccccccceeccCCCCCC----------CHHHHHHHhcccCceeEEEEEeCC----CCCcceeEEEEeCChhhHHHHHH
Q 006316 214 --DKTRFNNVYVKNLSETT----------TEDDLKKIFGEFGIITSTAVMRDA----DGKSKCFGFVNFDDPDDAARSVE 277 (650)
Q Consensus 214 --~~~~~~~l~V~nlp~~~----------t~e~l~~~F~~~G~i~~~~v~~~~----~g~srg~afV~f~~~~~A~~Ai~ 277 (650)
.......|++.|+.... ..++|+++|++||.|.++.|.++. .+.+.|++||+|.+.++|.+|+.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 01123567888885321 136789999999999999998752 24567999999999999999999
Q ss_pred HHcCCccCCeeEEEecchh
Q 006316 278 ALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 278 ~l~g~~~~g~~l~v~~a~~ 296 (650)
.|||..|.|+.|.+.+...
T Consensus 483 ~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HcCCCEECCeEEEEEEeCH
Confidence 9999999999999988754
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=278.80 Aligned_cols=275 Identities=30% Similarity=0.470 Sum_probs=227.2
Q ss_pred ceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcccccc
Q 006316 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 128 ~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 206 (650)
.+|||++||.+++.++|.++|+.+|.|..|.++++ ..+.++||+||.|+-.+++.+|+..+++..++|+.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 68999999999999999999999999999999998 55679999999999999999999999999999999999877654
Q ss_pred cccccccc--------------------cccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEe
Q 006316 207 QERESTAD--------------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266 (650)
Q Consensus 207 ~~~~~~~~--------------------~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f 266 (650)
........ ......|.|.|||+.+.+++|+.+|+.||.|..+.|.+..+|+-.|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 33220000 0113469999999999999999999999999999999999999889999999
Q ss_pred CChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHH-------HHh---------h------h-----------------
Q 006316 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM-------ELK---------G------K----------------- 307 (650)
Q Consensus 267 ~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~-------~~~---------~------~----------------- 307 (650)
.+..+|..|++.+|+..|.|+.+-|.||-.+..... .++ . .
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999854321100 000 0 0
Q ss_pred ---hhh------hh--------------hh----------hhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEe
Q 006316 308 ---FEQ------SL--------------KE----------TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354 (650)
Q Consensus 308 ---~~~------~~--------------~~----------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~ 354 (650)
++. +. ++ ......+.+|||+||++++|+++|.++|++||.|.++.+.
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 000 00 00 0001123579999999999999999999999999999998
Q ss_pred eCC-CCCCcceEEEEcCCHHHHHHHHHHh-----CC-ceecCeeEEEEecchhHH
Q 006316 355 RDP-NGISRGSGFVAFSTAEEASKALTEM-----NG-KMVVSKPLYVALAQRKEE 402 (650)
Q Consensus 355 ~~~-~g~s~g~~fV~f~~~~~A~~A~~~l-----~~-~~~~g~~l~V~~a~~~~~ 402 (650)
.++ +|+++|+|||.|.+..+|.++|... .| ..++||.|.|.+|-.+..
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 887 8999999999999999999999877 34 678999999999876554
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=5.3e-32 Score=301.17 Aligned_cols=270 Identities=20% Similarity=0.290 Sum_probs=208.8
Q ss_pred CCceeEecCCCcccchHHHHhhhccc------------CceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCcee
Q 006316 126 GAGNIFIKNLDKSIDNKALHDTFSTF------------GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193 (650)
Q Consensus 126 ~~~~l~V~nLp~~i~~~~L~~~Fs~~------------G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i 193 (650)
..++|||+|||.++++++|+++|+.+ +.|..+.+ +..+|||||+|.+.++|..|| .|||..+
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 45789999999999999999999875 23443333 336899999999999999999 5999999
Q ss_pred cCeeeEEcccccccccc-----------------------cccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEE
Q 006316 194 NDKQVFVGPFLRKQERE-----------------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250 (650)
Q Consensus 194 ~g~~l~v~~~~~~~~~~-----------------------~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v 250 (650)
.|..|.|.......... ........++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999996432211000 0001123468999999999999999999999999999999
Q ss_pred EeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHHHHhh--------hhhhhhh--hhhhcc
Q 006316 251 MRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG--------KFEQSLK--ETADKF 319 (650)
Q Consensus 251 ~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~--------~~~~~~~--~~~~~~ 319 (650)
+.+ .+|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++............ ....... ......
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGK 407 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCC
Confidence 887 57899999999999999999999999999999999999988532211000000 0000000 001123
Q ss_pred CCceeEEecCCCCC----------CHHHHHHHHhhcCCeEEEEEeeCC----CCCCcceEEEEcCCHHHHHHHHHHhCCc
Q 006316 320 EGLNLYVKNLDDSI----------SDDKLKELFSEFGTITSCKVMRDP----NGISRGSGFVAFSTAEEASKALTEMNGK 385 (650)
Q Consensus 320 ~~~~l~V~nl~~~~----------t~~~l~~~F~~~G~i~~~~i~~~~----~g~s~g~~fV~f~~~~~A~~A~~~l~~~ 385 (650)
.+.+|+|.|+...- ..++|+++|++||.|++|+|+++. .+.+.|++||+|.+.++|.+|+..|||+
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 56689999995321 236899999999999999998753 3456899999999999999999999999
Q ss_pred eecCeeEEEEecchhH
Q 006316 386 MVVSKPLYVALAQRKE 401 (650)
Q Consensus 386 ~~~g~~l~V~~a~~~~ 401 (650)
.|+|+.|.|.|.....
T Consensus 488 ~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 488 KFNDRVVVAAFYGEDC 503 (509)
T ss_pred EECCeEEEEEEeCHHH
Confidence 9999999999987644
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-32 Score=279.69 Aligned_cols=250 Identities=40% Similarity=0.637 Sum_probs=230.0
Q ss_pred eeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcccccccc
Q 006316 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208 (650)
Q Consensus 129 ~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~ 208 (650)
.|||+ +++++..|+++|+.+|.|+++++.+|. + +-|||||.|.++++|.+|++.+|...++|+.+++.|......
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 57888 899999999999999999999999999 6 999999999999999999999999999999999988754432
Q ss_pred cccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCee
Q 006316 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288 (650)
Q Consensus 209 ~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 288 (650)
. +||+||+++++..+|.+.|+.||.|.+|++..+.+| ++|| ||+|+++++|.+|++.+||..+.++.
T Consensus 78 ~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 78 L-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred e-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 2 999999999999999999999999999999999998 9999 99999999999999999999999999
Q ss_pred EEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEE
Q 006316 289 WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368 (650)
Q Consensus 289 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~ 368 (650)
++|.....+.++...... . ...-+++||+|++.+++++.|.++|+.||.|.++.++.+..|+++||+||.
T Consensus 145 i~vg~~~~~~er~~~~~~-~---------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE-Y---------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred eEEeeccchhhhcccccc-h---------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 999999988877654433 1 123358999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCceecCeeEEEEecchhHHHHHh
Q 006316 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406 (650)
Q Consensus 369 f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r~~~ 406 (650)
|.+.++|..|+..|++..+.++.++|.-++.+.++...
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~ 252 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAE 252 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhhHHH
Confidence 99999999999999999999999999999886666544
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=5.1e-31 Score=277.27 Aligned_cols=327 Identities=25% Similarity=0.404 Sum_probs=262.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
++-+|||+|||+.++|+||..+| |||.|...+.|.+|...+++..+.|+-+.|..+.
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~ 282 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSK 282 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcc
Confidence 56899999999999999999999 7999999999999999999999999988874321
Q ss_pred cCccc---------------------------------------------------------------------------
Q 006316 118 RDPTI--------------------------------------------------------------------------- 122 (650)
Q Consensus 118 ~~~~~--------------------------------------------------------------------------- 122 (650)
...+.
T Consensus 283 ~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~ 362 (725)
T KOG0110|consen 283 EKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQ 362 (725)
T ss_pred hhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhch
Confidence 10000
Q ss_pred ------------------ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHH
Q 006316 123 ------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184 (650)
Q Consensus 123 ------------------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~A 184 (650)
......-|+|+|||..+..++|..+|..||.|..+.+. ..| .-++|+|.+..+|+.|
T Consensus 363 e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G---~~aiv~fl~p~eAr~A 437 (725)
T KOG0110|consen 363 EVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG---TGAIVEFLNPLEARKA 437 (725)
T ss_pred hhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--ccc---ceeeeeecCccchHHH
Confidence 00011238999999999999999999999999988443 222 3499999999999999
Q ss_pred HHhhCCceecCeeeEEcccccccc-----------------------ccccc---------------------ccccccc
Q 006316 185 IDKLNGMLLNDKQVFVGPFLRKQE-----------------------RESTA---------------------DKTRFNN 220 (650)
Q Consensus 185 i~~lng~~i~g~~l~v~~~~~~~~-----------------------~~~~~---------------------~~~~~~~ 220 (650)
+..|....+....+++.+.....- +.... .....+.
T Consensus 438 frklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~ 517 (725)
T KOG0110|consen 438 FRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK 517 (725)
T ss_pred HHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh
Confidence 999998888777777754321100 00000 0011134
Q ss_pred eeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCC----cceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchh
Q 006316 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK----SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 221 l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~----srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 296 (650)
|||+||..+++.+++...|.+.|.|.++.|....++. |.|||||+|.+.++|..|+..|+|+.++|..|.+.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 9999999999999999999999999999888765543 669999999999999999999999999999999998872
Q ss_pred hhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeC-CCCCCcceEEEEcCCHHHH
Q 006316 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEA 375 (650)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~g~s~g~~fV~f~~~~~A 375 (650)
+.... .. +....+..+++|.|+|||+..+..+++++|..||.|.+|+|... ..+.++|||||.|-+..+|
T Consensus 598 k~~~~--~g-------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 598 KPAST--VG-------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred ccccc--cc-------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 21111 11 12222334789999999999999999999999999999999987 3566899999999999999
Q ss_pred HHHHHHhCCceecCeeEEEEecchhH
Q 006316 376 SKALTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 376 ~~A~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
.+|+..|.+..+.||.|.+.|++...
T Consensus 669 ~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 669 KNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHhhcccceechhhheehhccch
Confidence 99999999999999999999997643
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=4.6e-30 Score=265.37 Aligned_cols=167 Identities=28% Similarity=0.512 Sum_probs=152.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
....++|||+|||+++||++|+++|+.||+|++|+|++|..|++++|||||+|.+.++|++|++.||+..|.+++|+|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceec
Q 006316 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (650)
Q Consensus 116 s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~ 194 (650)
+.... ......+|||+|||.++++++|+++|+.||.|..|++..| .+|++++||||+|++.++|++||+.||+..+.
T Consensus 184 a~p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 184 ARPGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ccccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 76432 2234568999999999999999999999999999999998 58999999999999999999999999999887
Q ss_pred C--eeeEEcccc
Q 006316 195 D--KQVFVGPFL 204 (650)
Q Consensus 195 g--~~l~v~~~~ 204 (650)
+ +.|.|.++.
T Consensus 262 g~~~~l~V~~a~ 273 (346)
T TIGR01659 262 GGSQPLTVRLAE 273 (346)
T ss_pred CCceeEEEEECC
Confidence 6 567776554
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=4.2e-28 Score=250.79 Aligned_cols=170 Identities=33% Similarity=0.558 Sum_probs=153.3
Q ss_pred cccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEec
Q 006316 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293 (650)
Q Consensus 215 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 293 (650)
....++|||+|||.++++++|+++|+.||.|.++.|+.| .+++++|||||+|.++++|.+|++.|++..+.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 345689999999999999999999999999999999988 5789999999999999999999999999999999999988
Q ss_pred chhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCH
Q 006316 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTA 372 (650)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~ 372 (650)
+..... ....++|||+||+..+|+++|+++|++||+|++++|++++ +|+++|||||+|.+.
T Consensus 184 a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 184 ARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred cccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 754211 1234689999999999999999999999999999999887 899999999999999
Q ss_pred HHHHHHHHHhCCceecC--eeEEEEecchhHH
Q 006316 373 EEASKALTEMNGKMVVS--KPLYVALAQRKEE 402 (650)
Q Consensus 373 ~~A~~A~~~l~~~~~~g--~~l~V~~a~~~~~ 402 (650)
++|++||+.||+..+.+ ++|.|.+++.+..
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 99999999999999865 7899999886543
No 25
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=99.96 E-value=8.9e-30 Score=189.24 Aligned_cols=64 Identities=59% Similarity=0.925 Sum_probs=61.9
Q ss_pred ChHHHHHHhhhcchhhhhccCCCCccchhhhccCCChHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 006316 562 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625 (650)
Q Consensus 562 ~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~ 625 (650)
+|++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~lle~~~~L~~kv~EA~~vl~~~ 64 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITGMLLEMDNSELLHLLESPELLRSKVDEALEVLKSH 64 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999999999999999999999999999999999864
No 26
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=229.43 Aligned_cols=233 Identities=20% Similarity=0.256 Sum_probs=198.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs-~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
-.+++||.|+|+++.+++|+++|. +.|.|+.|.+.-| .+++++|||.|+|+++|.+++|++.||...++||+|.|.-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 357899999999999999999995 5799999999999 67999999999999999999999999999999999999754
Q ss_pred ccCcc----cccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCce
Q 006316 117 YRDPT----IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (650)
Q Consensus 117 ~~~~~----~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (650)
..... .......+.|+.++....-.+.|...|+.-|.+..-....|.++.+++..+++|++.-.+..++.-++...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 33211 11223467999999999999999999999998888888888999999999999999988988887666655
Q ss_pred ecCeeeEEcccccccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhH
Q 006316 193 LNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272 (650)
Q Consensus 193 i~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A 272 (650)
...+.+.+ +. ....+.+||.||...+....|++.|.-.|.|+++.+.-|+.|.++||+.++|..+-.|
T Consensus 202 ~Flr~~h~--f~----------pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpvea 269 (608)
T KOG4212|consen 202 SFLRSLHI--FS----------PPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEA 269 (608)
T ss_pred hhhhhccC--CC----------CCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHH
Confidence 44444443 11 1123568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCc
Q 006316 273 ARSVEALNGKK 283 (650)
Q Consensus 273 ~~Ai~~l~g~~ 283 (650)
-.||..+++.-
T Consensus 270 vqaIsml~~~g 280 (608)
T KOG4212|consen 270 VQAISMLDRQG 280 (608)
T ss_pred HHHHHhhccCC
Confidence 99998888543
No 27
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=222.02 Aligned_cols=349 Identities=21% Similarity=0.287 Sum_probs=258.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCc--cCCCCcc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLNGKPI 111 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~--~i~g~~i 111 (650)
.-..+++.|.++|||++++|+||.+++..||+|+.+.+.+.+. .||++|.+.+.|...+...... .+.|++|
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcce
Confidence 3345789999999999999999999999999999999988765 7999999999998866544332 3678888
Q ss_pred cccccccCc-------c------------------c------ccCC-------CceeEecCCCcccchHHHHhhhcccCc
Q 006316 112 RIMYSYRDP-------T------------------I------RKSG-------AGNIFIKNLDKSIDNKALHDTFSTFGN 153 (650)
Q Consensus 112 ~v~~s~~~~-------~------------------~------~~~~-------~~~l~V~nLp~~i~~~~L~~~Fs~~G~ 153 (650)
.|.+|.-.. . . ...+ .-+++|.|+-..++-+-|+.+|++||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 887653210 0 0 0001 124789999999999999999999999
Q ss_pred eeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCee--eEEccccc---------ccccc--------c---
Q 006316 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ--VFVGPFLR---------KQERE--------S--- 211 (650)
Q Consensus 154 I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~--l~v~~~~~---------~~~~~--------~--- 211 (650)
|+.+.-....+| -.|+|+|.+.+.|..|...|+|..|.+.+ |++....- .+.|. .
T Consensus 177 VlKIiTF~Knn~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 177 VLKIITFTKNNG---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred eEEEEEEecccc---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 998776654322 24999999999999999999998875533 34322110 00000 0
Q ss_pred -----------------------------------c-cc-cccccceeccCCC-CCCCHHHHHHHhcccCceeEEEEEeC
Q 006316 212 -----------------------------------T-AD-KTRFNNVYVKNLS-ETTTEDDLKKIFGEFGIITSTAVMRD 253 (650)
Q Consensus 212 -----------------------------------~-~~-~~~~~~l~V~nlp-~~~t~e~l~~~F~~~G~i~~~~v~~~ 253 (650)
. .. ......|.|.||- ..+|.+.|..+|+-||.|..++++.+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 0 00 0012457778885 56899999999999999999999986
Q ss_pred CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhHH-------HHHHhhhhhhhhh-----hhh-----
Q 006316 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER-------EMELKGKFEQSLK-----ETA----- 316 (650)
Q Consensus 254 ~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~-------~~~~~~~~~~~~~-----~~~----- 316 (650)
+ +.-|+|.+.+...|.-|++.|+|..+.|+.|.|..++...-. ...+...+..+.- ...
T Consensus 334 k----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~n 409 (492)
T KOG1190|consen 334 K----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQN 409 (492)
T ss_pred C----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccc
Confidence 3 357999999999999999999999999999999888653211 1111111111111 111
Q ss_pred hccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEE-EEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCe-eEEE
Q 006316 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PLYV 394 (650)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~-~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l~V 394 (650)
-..++.+|+..|+|.+++||+|++.|..-|...+. +++.. .+.++++.+.++|+|..|+..+|++.+++. .|+|
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k----d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv 485 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK----DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV 485 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC----CcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence 12345689999999999999999999988766555 44432 355999999999999999999999999654 8999
Q ss_pred Eecch
Q 006316 395 ALAQR 399 (650)
Q Consensus 395 ~~a~~ 399 (650)
+|++.
T Consensus 486 SFSks 490 (492)
T KOG1190|consen 486 SFSKS 490 (492)
T ss_pred Eeecc
Confidence 99864
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.8e-27 Score=233.29 Aligned_cols=172 Identities=31% Similarity=0.582 Sum_probs=149.7
Q ss_pred ccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCc-cCCe--eEEE
Q 006316 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKK-FDDK--EWYV 291 (650)
Q Consensus 216 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~v 291 (650)
...-++||+.+|+.|+|.||+++|++||.|.+|.+++| .++.++|||||.|.+.++|.+|+.+|++.. +.|. .+.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 34467999999999999999999999999999999999 468999999999999999999999998865 5554 5667
Q ss_pred ecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCC
Q 006316 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371 (650)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~ 371 (650)
.++....++. ....+|||+-|+..+||++++++|++||.|++|+|++|..+.|||||||+|++
T Consensus 112 k~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 112 KYADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred cccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 6666544332 23357999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcee---cCeeEEEEecchhHHHH
Q 006316 372 AEEASKALTEMNGKMV---VSKPLYVALAQRKEERR 404 (650)
Q Consensus 372 ~~~A~~A~~~l~~~~~---~g~~l~V~~a~~~~~r~ 404 (650)
.+.|..||+.|||..- ...+|.|+||+.++.|.
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 9999999999999744 35689999998765543
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=3.3e-26 Score=248.18 Aligned_cols=177 Identities=26% Similarity=0.459 Sum_probs=152.0
Q ss_pred cccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 217 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
...+|||+||+.++++++|+++|++||.|.++.++.| .+|+++|||||+|.+.++|.+|++.|||..+.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4568999999999999999999999999999999988 578999999999999999999999999999999999998654
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHH
Q 006316 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374 (650)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~ 374 (650)
......... . .. .......++|||+||+.++++++|+++|+.||.|++++|.++. +|+++|||||+|.+.++
T Consensus 186 ~~p~a~~~~----~-~~--~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 186 NMPQAQPII----D-MV--QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred ccccccccc----c-cc--cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 321110000 0 00 0011234689999999999999999999999999999999987 57899999999999999
Q ss_pred HHHHHHHhCCceecCeeEEEEecchh
Q 006316 375 ASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 375 A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
|.+|++.||+..++|+.|+|.++...
T Consensus 259 A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 259 QSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999999987643
No 30
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=5.8e-26 Score=240.76 Aligned_cols=170 Identities=31% Similarity=0.502 Sum_probs=149.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCC--Ccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG--KPIRIMY 115 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g--~~i~v~~ 115 (650)
..++|||+|||.++++++|+++|+.||.|..++++++..++.++|||||+|.+.++|++|++.||+..+.| ++|+|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45789999999999999999999999999999999998899999999999999999999999999998877 5667766
Q ss_pred cccCccc------------------c------------------------------------------------------
Q 006316 116 SYRDPTI------------------R------------------------------------------------------ 123 (650)
Q Consensus 116 s~~~~~~------------------~------------------------------------------------------ 123 (650)
+...... +
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 5321100 0
Q ss_pred ------------------cCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCC-CCCcccEEEEEECCHHHHHHH
Q 006316 124 ------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSA 184 (650)
Q Consensus 124 ------------------~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~-~g~skg~afV~F~~~e~A~~A 184 (650)
.....+|||+|||.++++++|+++|+.||.|.+|+|.+|. +|.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0001259999999999999999999999999999999994 899999999999999999999
Q ss_pred HHhhCCceecCeeeEEccccccc
Q 006316 185 IDKLNGMLLNDKQVFVGPFLRKQ 207 (650)
Q Consensus 185 i~~lng~~i~g~~l~v~~~~~~~ 207 (650)
++.|||..|.|+.|.|.+...+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999998876654
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=1.8e-26 Score=204.47 Aligned_cols=172 Identities=34% Similarity=0.625 Sum_probs=153.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
...++|||+||+..++++.|+|+|-++|+|++|++.+|+.|....|||||+|.++|||+.|++-||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeE-EEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceec
Q 006316 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (650)
Q Consensus 117 ~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~-~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~ 194 (650)
..... .-....++||+||.+++|++.|+++|+.||.+.+ -+++++ .+|.++++|||.|++.+.+.+|+..+||..++
T Consensus 87 s~~~~-nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 87 SAHQK-NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred ccccc-cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 63222 2223378999999999999999999999998765 356677 55889999999999999999999999999999
Q ss_pred CeeeEEccccccccc
Q 006316 195 DKQVFVGPFLRKQER 209 (650)
Q Consensus 195 g~~l~v~~~~~~~~~ 209 (650)
++.+.|..+..+...
T Consensus 166 nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTK 180 (203)
T ss_pred CCceEEEEEEecCCC
Confidence 999999887665443
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=217.24 Aligned_cols=169 Identities=22% Similarity=0.488 Sum_probs=152.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~ 118 (650)
.|+||||.+...+.|+.|+..|..||+|+||.+.-|..|++++|||||+|+-+|.|+-|++.||+..+.||-|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred Cccc---------ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCC-CCcccEEEEEECCHHHHHHHHHhh
Q 006316 119 DPTI---------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188 (650)
Q Consensus 119 ~~~~---------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~-g~skg~afV~F~~~e~A~~Ai~~l 188 (650)
-+.. ....-.+|||..+.+++++++|+.+|+.||+|+.|.+.++.+ +.+|||+|++|.+..+-..||..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 2111 112346899999999999999999999999999999999954 568999999999999999999999
Q ss_pred CCceecCeeeEEccccccc
Q 006316 189 NGMLLNDKQVFVGPFLRKQ 207 (650)
Q Consensus 189 ng~~i~g~~l~v~~~~~~~ 207 (650)
|-+.+.|..++|+.+....
T Consensus 273 NlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred chhhcccceEecccccCCC
Confidence 9999999999998876543
No 33
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=99.93 E-value=3.6e-27 Score=182.86 Aligned_cols=71 Identities=63% Similarity=0.906 Sum_probs=69.3
Q ss_pred cchhhhhhcCChHHHHHHhhhcchhhhhccCCCCccchhhhccCCChHHHHHhcCChHHHHHHHHHHHHHH
Q 006316 552 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 622 (650)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l 622 (650)
+.+++.|+++++++||++|||+|||+|..++|++|+||||||||||++||++||+|++.|++||+||++||
T Consensus 2 ~~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~~~L~~kv~eA~~vL 72 (72)
T PF00658_consen 2 PLTASALASASPEQQKQILGERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDPELLREKVQEAIEVL 72 (72)
T ss_dssp STSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cchHHHHhcCCHHHHHHHHhccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999997
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=3.7e-26 Score=234.79 Aligned_cols=328 Identities=21% Similarity=0.309 Sum_probs=228.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
+..+++++--|...+++-+|+++|+.+|+|.+|+++.|..+++|+|.|||+|.+.+....|+ .|.+..+.|.+|.|..+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 44678888888899999999999999999999999999999999999999999999999999 78999999999999876
Q ss_pred ccCc--------cccc---CC-CceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHH
Q 006316 117 YRDP--------TIRK---SG-AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKS 183 (650)
Q Consensus 117 ~~~~--------~~~~---~~-~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~ 183 (650)
.... .+.. .+ -..|+|+||-.++++++|+.+|+.||.|..+.+..| .+|.++|||||+|.+.++|.+
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~ 335 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARK 335 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHH
Confidence 4321 1111 01 112899999999999999999999999999999999 499999999999999999999
Q ss_pred HHHhhCCceecCeeeEEcccccccccccccc-cccccceeccCCCCCC-CHHHHHHHhcccCceeEEEEEeCCCCCccee
Q 006316 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRFNNVYVKNLSETT-TEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261 (650)
Q Consensus 184 Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~~-~~~~~~l~V~nlp~~~-t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~ 261 (650)
|++.|||.+|-|+.|.|+....+........ ...+..+--.+|+.-. ...++..-|.+.-.+. +.
T Consensus 336 a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~---~~---------- 402 (549)
T KOG0147|consen 336 ALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS---LP---------- 402 (549)
T ss_pred HHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCcc---cc----------
Confidence 9999999999999999987665544332200 0000101111222111 1122222222111000 00
Q ss_pred EEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCH------
Q 006316 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD------ 335 (650)
Q Consensus 262 afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~------ 335 (650)
.+...|..++..++.....+....+.-..++ .. ...-...+.++.++|+-+..|+
T Consensus 403 -----s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~-------------~~-~p~~~i~t~C~lL~nMFdpstete~n~d 463 (549)
T KOG0147|consen 403 -----STAISALLLLAKLASAAQFNGVVRVRSVDPA-------------DA-SPAFDIPTQCLLLSNMFDPSTETEPNWD 463 (549)
T ss_pred -----chhhhHHHhccccchHHhhcCCcCccccCcc-------------cc-ccccCCccHHHHHhhcCCcccccCcchh
Confidence 1111122222222111111100000000000 00 0001145557778887544433
Q ss_pred ----HHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhH
Q 006316 336 ----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 336 ----~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
||+.+.+++||+|..|.|.+. |-||.||.|.+.+.|..|+++|||.+|.||.|..+|-....
T Consensus 464 ~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 464 QEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLER 529 (549)
T ss_pred hHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhh
Confidence 788899999999999887665 45899999999999999999999999999999999876544
No 35
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=7.1e-25 Score=231.16 Aligned_cols=258 Identities=23% Similarity=0.399 Sum_probs=214.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
.+..+.|+|+|||..+..++|.+.|..||.|..|.+.+. .+ -|+|.|.+..+|..|+..|.+..+..-++.+.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~-G~-----~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG-GT-----GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcc-cc-----eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 345689999999999999999999999999998844432 22 499999999999999999999999999998887
Q ss_pred cccCccc------------------------------------------------ccCCCceeEecCCCcccchHHHHhh
Q 006316 116 SYRDPTI------------------------------------------------RKSGAGNIFIKNLDKSIDNKALHDT 147 (650)
Q Consensus 116 s~~~~~~------------------------------------------------~~~~~~~l~V~nLp~~i~~~~L~~~ 147 (650)
...+.-. .....+.|||+||..+.+.++|...
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 5432100 0001123999999999999999999
Q ss_pred hcccCceeEEEEeeCCCCC----cccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccccccc---ccccccccccc
Q 006316 148 FSTFGNILSCKVATDSLGQ----SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER---ESTADKTRFNN 220 (650)
Q Consensus 148 Fs~~G~I~~~~v~~d~~g~----skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~---~~~~~~~~~~~ 220 (650)
|+..|.|.+|.|....++. |.|||||+|.+.++|+.|++.|+|+.|.|+.|.|..+..+... .....+...++
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tK 615 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTK 615 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccce
Confidence 9999999999888775543 5599999999999999999999999999999999776511111 11111233578
Q ss_pred eeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhH
Q 006316 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299 (650)
Q Consensus 221 l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 299 (650)
|+|+|+|...+..+++.+|..||.+.++.+... ..+.++|||||+|-+..+|..|+++|.++++.|+.|.+.|+.....
T Consensus 616 IlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 616 ILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred eeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 999999999999999999999999999999887 4456799999999999999999999999999999999999987544
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=1.6e-23 Score=229.88 Aligned_cols=176 Identities=31% Similarity=0.507 Sum_probs=151.5
Q ss_pred cccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 217 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
..++|||+|||..+++++|+++|++||.|.++.++.+ .+++++|||||+|.+.++|.+|+. +++..+.|+.+.|....
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 3468999999999999999999999999999999998 568899999999999999999996 89999999999998765
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHH
Q 006316 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374 (650)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~ 374 (650)
........... .........++|||+||+..+|+++|+++|+.||.|.+|.++.+. +|+++|||||+|.+.++
T Consensus 167 ~~~~~~~~~~~------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 167 AEKNRAAKAAT------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred hhhhhhhhccc------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 43322211000 000111235789999999999999999999999999999999887 56999999999999999
Q ss_pred HHHHHHHhCCceecCeeEEEEecch
Q 006316 375 ASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 375 A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
|.+|+..|||..+.|+.|.|.++..
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999873
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=5.3e-24 Score=198.21 Aligned_cols=169 Identities=33% Similarity=0.622 Sum_probs=154.0
Q ss_pred cccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEec
Q 006316 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293 (650)
Q Consensus 215 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~-~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 293 (650)
....+||.|..||..+|.|+++.+|...|+|++|++++|+ .|.|-||+||.|.++++|++|++.|||..+..+.+.|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3455899999999999999999999999999999999994 799999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCH
Q 006316 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTA 372 (650)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~ 372 (650)
+..... ...+.+|||.+||..+|..||+.+|++||.|..-+|+.|. +|.+||.|||.|+..
T Consensus 118 ARPSs~------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 118 ARPSSD------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred ccCChh------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 876432 3456799999999999999999999999999999998887 899999999999999
Q ss_pred HHHHHHHHHhCCceecC--eeEEEEecchhH
Q 006316 373 EEASKALTEMNGKMVVS--KPLYVALAQRKE 401 (650)
Q Consensus 373 ~~A~~A~~~l~~~~~~g--~~l~V~~a~~~~ 401 (650)
+||+.||..|||..-.| .+|.|+|+....
T Consensus 180 ~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred hHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 99999999999987754 679999997653
No 38
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.89 E-value=1.1e-20 Score=184.63 Aligned_cols=345 Identities=18% Similarity=0.184 Sum_probs=255.5
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccc--cCccCC
Q 006316 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL--NFTPLN 107 (650)
Q Consensus 30 ~~~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~l--n~~~i~ 107 (650)
+.+.....++..+.|++|...++|.+|.+-++.||+|.-+.....++ .|.|+|++.+.|+.|+... |...+.
T Consensus 22 ~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~ 95 (494)
T KOG1456|consen 22 NADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIA 95 (494)
T ss_pred CCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCccccc
Confidence 34444455688999999999999999999999999998888877654 6999999999999999542 455678
Q ss_pred CCcccccccccCccccc----CCCce---eEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHH
Q 006316 108 GKPIRIMYSYRDPTIRK----SGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180 (650)
Q Consensus 108 g~~i~v~~s~~~~~~~~----~~~~~---l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~ 180 (650)
|+.--+.+|..+.-.|. ...+. +.|-|--+.||.+-|+.++...|.|+.|.|.+. ..-.|.|+|++.+.
T Consensus 96 gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~ 171 (494)
T KOG1456|consen 96 GQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEV 171 (494)
T ss_pred CchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHH
Confidence 88887777743321111 11122 346777788999999999999999999988875 34579999999999
Q ss_pred HHHHHHhhCCceecC--eeeEEccccccccccccccc-------------------------------------------
Q 006316 181 AKSAIDKLNGMLLND--KQVFVGPFLRKQERESTADK------------------------------------------- 215 (650)
Q Consensus 181 A~~Ai~~lng~~i~g--~~l~v~~~~~~~~~~~~~~~------------------------------------------- 215 (650)
|++|.+.|||..|.. ++|.|+.+.....+....+.
T Consensus 172 AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~ 251 (494)
T KOG1456|consen 172 AQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSG 251 (494)
T ss_pred HHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCC
Confidence 999999999987753 44555443322111100000
Q ss_pred ---------------------------------ccccceeccCCCC-CCCHHHHHHHhcccCceeEEEEEeCCCCCccee
Q 006316 216 ---------------------------------TRFNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261 (650)
Q Consensus 216 ---------------------------------~~~~~l~V~nlp~-~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~ 261 (650)
.....+.|.+|.. .++-+.|..+|-.||.|..+++++.+. |.
T Consensus 252 y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gt 327 (494)
T KOG1456|consen 252 YYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GT 327 (494)
T ss_pred CcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ce
Confidence 0001266677764 356788999999999999999998754 58
Q ss_pred EEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHH---HHh--------------hhh--hhhhhhhhhccCCc
Q 006316 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM---ELK--------------GKF--EQSLKETADKFEGL 322 (650)
Q Consensus 262 afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~---~~~--------------~~~--~~~~~~~~~~~~~~ 322 (650)
|.|++.+..+.++|+..||+..+.|.+|.+..++...-... .+. .++ .....+.....+++
T Consensus 328 amVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~ 407 (494)
T KOG1456|consen 328 AMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSN 407 (494)
T ss_pred eEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcc
Confidence 99999999999999999999999999999887754321100 000 000 00111122346778
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCC-eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecC
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGT-ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~-i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g 389 (650)
.|+.-|.|..+|||.|.++|...+. -++++|+..++-+|. .+.++|++.++|..|+..+|...+.+
T Consensus 408 vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSs-sGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 408 VLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSS-SGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred eeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccc-cceeeeehHHHHHHHHHHhccccccC
Confidence 8999999999999999999987653 678888877654443 68999999999999999999998864
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=2.8e-22 Score=178.00 Aligned_cols=170 Identities=31% Similarity=0.536 Sum_probs=151.7
Q ss_pred cccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 217 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
...+|||+||+..++++-|.++|-+.|.|.++.+.+| .+...+||||++|.++++|+-|++-||..++.|+.|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4468999999999999999999999999999999998 456789999999999999999999999999999999998886
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEE-EEeeCC-CCCCcceEEEEcCCHH
Q 006316 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRDP-NGISRGSGFVAFSTAE 373 (650)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~-~i~~~~-~g~s~g~~fV~f~~~~ 373 (650)
.... .-..+.+|||+||+++++|.-|.+.|+.||.+.+. +++++. +|.++|||||.|.+.+
T Consensus 88 ~~~~-----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 88 AHQK-----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred cccc-----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 2110 11234689999999999999999999999998775 788887 5889999999999999
Q ss_pred HHHHHHHHhCCceecCeeEEEEecchhHHH
Q 006316 374 EASKALTEMNGKMVVSKPLYVALAQRKEER 403 (650)
Q Consensus 374 ~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r 403 (650)
.+.+|+..+||..++.+++.|+++.++..+
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 999999999999999999999999876643
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=3.2e-22 Score=189.77 Aligned_cols=151 Identities=25% Similarity=0.496 Sum_probs=139.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccccC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~ 119 (650)
-+|||||||..+++.+|+.+|.+||+|++|.|++. |+||..++...|+.|+..|++-.|+|.-|+|..++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 9999999999999999999999999999999987755
Q ss_pred cccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeE
Q 006316 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199 (650)
Q Consensus 120 ~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 199 (650)
...+++|+|+||.+.++++||+..|++||.|.+|+++ ++|+||+|...++|..|++.|++.++.|+++.
T Consensus 75 ----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 ----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred ----CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceee
Confidence 2245789999999999999999999999999999996 46999999999999999999999999999999
Q ss_pred Eccccccccc
Q 006316 200 VGPFLRKQER 209 (650)
Q Consensus 200 v~~~~~~~~~ 209 (650)
|....++-..
T Consensus 144 vq~stsrlrt 153 (346)
T KOG0109|consen 144 VQLSTSRLRT 153 (346)
T ss_pred eeeecccccc
Confidence 9877665433
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.2e-21 Score=183.18 Aligned_cols=187 Identities=30% Similarity=0.475 Sum_probs=156.0
Q ss_pred cccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCc-cC--CeeEEEec
Q 006316 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-FD--DKEWYVGK 293 (650)
Q Consensus 217 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~-~~--g~~l~v~~ 293 (650)
+.++|||+-|.+.-.|||++.+|..||.|++|.+.+..+|.+|||+||.|.+..+|..||..|+|.. +. ...|.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 4478999999999999999999999999999999999999999999999999999999999999865 33 34677777
Q ss_pred chhhhHHHHHHhhhhh----------------------------------------------------------------
Q 006316 294 AQKKYEREMELKGKFE---------------------------------------------------------------- 309 (650)
Q Consensus 294 a~~~~~~~~~~~~~~~---------------------------------------------------------------- 309 (650)
+....||.........
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 7544333211100000
Q ss_pred -----------------------------------------------------------------------------h--
Q 006316 310 -----------------------------------------------------------------------------Q-- 310 (650)
Q Consensus 310 -----------------------------------------------------------------------------~-- 310 (650)
.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0
Q ss_pred -----------------hhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCH
Q 006316 311 -----------------SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTA 372 (650)
Q Consensus 311 -----------------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~ 372 (650)
......+...+|||||-.||.+..|.||..+|-.||.|.+.+|+.|+ +++||+||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00001134568899999999999999999999999999999999998 889999999999999
Q ss_pred HHHHHHHHHhCCceecCeeEEEEecchhHHH
Q 006316 373 EEASKALTEMNGKMVVSKPLYVALAQRKEER 403 (650)
Q Consensus 373 ~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r 403 (650)
.+|..||..|||..|+-|+|+|.+.++|+..
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999888753
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=7.3e-22 Score=187.34 Aligned_cols=149 Identities=23% Similarity=0.509 Sum_probs=138.9
Q ss_pred cceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhh
Q 006316 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298 (650)
Q Consensus 219 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 298 (650)
.+|||+|||..+++.+|+.+|++||+|..|.|+++ ||||..++...+..|+..|++.+++|..|.|..++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc-
Confidence 35899999999999999999999999999999965 9999999999999999999999999999999877664
Q ss_pred HHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHH
Q 006316 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378 (650)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A 378 (650)
...+++|+|+||.+.++.++|+..|++||.|.+++|.++ |+||.|.-.++|..|
T Consensus 75 -------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 -------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEA 128 (346)
T ss_pred -------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHH
Confidence 125678999999999999999999999999999999988 999999999999999
Q ss_pred HHHhCCceecCeeEEEEecchhH
Q 006316 379 LTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 379 ~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
++.|+|+.|.|+++.|.++..+-
T Consensus 129 ir~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred Hhcccccccccceeeeeeecccc
Confidence 99999999999999999987553
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.81 E-value=1.2e-18 Score=177.39 Aligned_cols=336 Identities=16% Similarity=0.215 Sum_probs=232.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
..--|.+++|||++|++||.++|+.+ .|.++.+.|+ +++..|-|||+|.+.+|+++|+++ +...+..+.|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 34678999999999999999999998 6788877774 688899999999999999999954 7777888888886553
Q ss_pred cCcc-------ccc--CCCceeEecCCCcccchHHHHhhhcccCceeE-EEEeeCCCCCcccEEEEEECCHHHHHHHHHh
Q 006316 118 RDPT-------IRK--SGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187 (650)
Q Consensus 118 ~~~~-------~~~--~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~-~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~ 187 (650)
..+. -.. .....|.+++||.+|++++|.++|+..-.|.. +.+..+..+++.|-|||+|++.+.|+.|+.+
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH
Confidence 3221 111 24567999999999999999999998865555 5566778888999999999999999999975
Q ss_pred hCCceecCeeeEEcccccccccccc------------------------------------------------------c
Q 006316 188 LNGMLLNDKQVFVGPFLRKQEREST------------------------------------------------------A 213 (650)
Q Consensus 188 lng~~i~g~~l~v~~~~~~~~~~~~------------------------------------------------------~ 213 (650)
+...|..+-|.|-.+.....+... .
T Consensus 165 -hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~ 243 (510)
T KOG4211|consen 165 -HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQ 243 (510)
T ss_pred -HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccc
Confidence 333444444444211100000000 0
Q ss_pred c----------------c-----------------ccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcce
Q 006316 214 D----------------K-----------------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260 (650)
Q Consensus 214 ~----------------~-----------------~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg 260 (650)
. . .....+..+.||...++.++.++|+..-.+ .+.+-..++|+..|
T Consensus 244 d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TG 322 (510)
T KOG4211|consen 244 DYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATG 322 (510)
T ss_pred ccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCC
Confidence 0 0 000237788999999999999999976544 67777888999999
Q ss_pred eEEEEeCChhhHHHHHHHHcCCccCCeeEEEec-----chhhh----------------------HHHHHH--hh---h-
Q 006316 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK-----AQKKY----------------------EREMEL--KG---K- 307 (650)
Q Consensus 261 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~-----a~~~~----------------------~~~~~~--~~---~- 307 (650)
-++|+|.+.++|..|+.+ ++..+..+-+..-. +.... .+...- .. .
T Consensus 323 EAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~~ 401 (510)
T KOG4211|consen 323 EADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRGS 401 (510)
T ss_pred cceeecccchhhHhhhcc-CCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCCCCccccC
Confidence 999999999999998853 22222222111100 00000 000000 00 0
Q ss_pred -----------------hhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcC
Q 006316 308 -----------------FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370 (650)
Q Consensus 308 -----------------~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~ 370 (650)
.....-.......-..|..+.+|+..++.++.++|..++. ..+.+..|......|-|-|.|.
T Consensus 402 ~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~~-a~~~~~yd~~~~~~~~a~~~~~ 480 (510)
T KOG4211|consen 402 PYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIRP-AQVELLYDHQFQRSGDARVIFY 480 (510)
T ss_pred CCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccCc-ccccccccccccccCceeEEEe
Confidence 0000000111222346788899999999999999998853 4677778877777888999999
Q ss_pred CHHHHHHHHHH
Q 006316 371 TAEEASKALTE 381 (650)
Q Consensus 371 ~~~~A~~A~~~ 381 (650)
+.++++.|+.+
T Consensus 481 ~~~~~q~a~~~ 491 (510)
T KOG4211|consen 481 NRKDYQDALMK 491 (510)
T ss_pred chhhhHHHHHh
Confidence 99999999864
No 44
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=7e-20 Score=178.30 Aligned_cols=272 Identities=21% Similarity=0.434 Sum_probs=211.3
Q ss_pred CceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccc
Q 006316 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205 (650)
Q Consensus 127 ~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 205 (650)
.|+|||+.|..++.++.|+..|..||.|.++.+.+| .++++||||||+|+-+|.|..|++.+||..+.|+.|.|+.-..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 478999999999999999999999999999999999 6899999999999999999999999999999999999974322
Q ss_pred ccccc-----cccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCC-CCcceeEEEEeCChhhHHHHHHHH
Q 006316 206 KQERE-----STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279 (650)
Q Consensus 206 ~~~~~-----~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~-g~srg~afV~f~~~~~A~~Ai~~l 279 (650)
-.... -......++++||..+..+.+++||+.+|+.||+|.+|.+.++.+ +..+||||++|.+..+...|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 11111 111246789999999999999999999999999999999999965 568999999999999999999999
Q ss_pred cCCccCCeeEEEecchhhh---------------------------HH--------------------------------
Q 006316 280 NGKKFDDKEWYVGKAQKKY---------------------------ER-------------------------------- 300 (650)
Q Consensus 280 ~g~~~~g~~l~v~~a~~~~---------------------------~~-------------------------------- 300 (650)
|-..++|..|.|.++-... ..
T Consensus 273 NlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l 352 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTL 352 (544)
T ss_pred chhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCc
Confidence 9999999999987762100 00
Q ss_pred -----------------------------------------------------HHHHhhhhh--hh--------------
Q 006316 301 -----------------------------------------------------EMELKGKFE--QS-------------- 311 (650)
Q Consensus 301 -----------------------------------------------------~~~~~~~~~--~~-------------- 311 (650)
..++..+.+ ..
T Consensus 353 ~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sA 432 (544)
T KOG0124|consen 353 PQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSA 432 (544)
T ss_pred cccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccH
Confidence 000000000 00
Q ss_pred ----hhhhhhccCCceeEEecC--CCCCC---HHHHHHHHhhcCCeEEEEEeeCCCCCC-----cceEEEEcCCHHHHHH
Q 006316 312 ----LKETADKFEGLNLYVKNL--DDSIS---DDKLKELFSEFGTITSCKVMRDPNGIS-----RGSGFVAFSTAEEASK 377 (650)
Q Consensus 312 ----~~~~~~~~~~~~l~V~nl--~~~~t---~~~l~~~F~~~G~i~~~~i~~~~~g~s-----~g~~fV~f~~~~~A~~ 377 (650)
.........++.+.++|+ |.+++ +.+|++.+++||.|.+|.|...+.+.. ----||+|+...++.+
T Consensus 433 RhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~r 512 (544)
T KOG0124|consen 433 RHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHR 512 (544)
T ss_pred HHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHH
Confidence 000111233456777887 33443 468889999999999998887653221 1135999999999999
Q ss_pred HHHHhCCceecCeeEEEEecc
Q 006316 378 ALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 378 A~~~l~~~~~~g~~l~V~~a~ 398 (650)
|+..|+|+.|+|+++...+.+
T Consensus 513 ak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 513 AKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHHhhccceecCceeehhhhh
Confidence 999999999999988766543
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.81 E-value=2.1e-19 Score=178.90 Aligned_cols=246 Identities=19% Similarity=0.214 Sum_probs=202.2
Q ss_pred ceeEecCCCcccchHHHHhhh-cccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcccccc
Q 006316 128 GNIFIKNLDKSIDNKALHDTF-STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 128 ~~l~V~nLp~~i~~~~L~~~F-s~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 206 (650)
+.+||+|||+++...+|+++| ++.|+|.-|.+..|..|+++|+|.|+|+++|.+++|++.||.+.++|+.|.|......
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~ 124 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE 124 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch
Confidence 459999999999999999999 5779999999999999999999999999999999999999999999999999644332
Q ss_pred cccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCC
Q 006316 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286 (650)
Q Consensus 207 ~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g 286 (650)
..-..........+.|+.++....-...|...|+--|.+..-.+.+|.++.+++..+++|++.-.+..++..++......
T Consensus 125 q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Fl 204 (608)
T KOG4212|consen 125 QRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFL 204 (608)
T ss_pred hhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhh
Confidence 22111122233467899999988888888888888787777778888999999999999998766666665444333222
Q ss_pred eeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEE
Q 006316 287 KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366 (650)
Q Consensus 287 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~f 366 (650)
+.+.. ...+....+||.||.+.+..+.|++.|.--|.|+++.+-.|+.|.++||+.
T Consensus 205 r~~h~------------------------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~v 260 (608)
T KOG4212|consen 205 RSLHI------------------------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAV 260 (608)
T ss_pred hhccC------------------------CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeE
Confidence 22221 111223469999999999999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 367 V~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
++|+.+-+|..||..+++..+..++..+.+.
T Consensus 261 i~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 261 IEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred EEecchHHHHHHHHhhccCCCccccceeecc
Confidence 9999999999999999988888888888774
No 46
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.78 E-value=1.2e-18 Score=174.78 Aligned_cols=171 Identities=27% Similarity=0.455 Sum_probs=151.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
+.++|+|++|.++++|+.|++.|++||.|.+|.|.+|..|++++||+||+|.+.+...+++.. ....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 679999999999999999999999999999999999999999999999999999999999954 5567999999888765
Q ss_pred cCcccccCC----CceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCce
Q 006316 118 RDPTIRKSG----AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (650)
Q Consensus 118 ~~~~~~~~~----~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (650)
......... ...|||++|+.++++++|++.|.+||.|..+.++.| ...+++||+||.|.+++++.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 554444443 448999999999999999999999999999999988 678899999999999999999885 46788
Q ss_pred ecCeeeEEcccccccccc
Q 006316 193 LNDKQVFVGPFLRKQERE 210 (650)
Q Consensus 193 i~g~~l~v~~~~~~~~~~ 210 (650)
|+++.+.|..+.++....
T Consensus 163 ~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecCceeeEeeccchhhcc
Confidence 999999999888776554
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=2.8e-18 Score=160.76 Aligned_cols=171 Identities=29% Similarity=0.453 Sum_probs=143.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCcc-CCC--Ccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNG--KPI 111 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~-i~g--~~i 111 (650)
+....++||||-|...-.|+|++.+|..||.|.+|.|.|. ..+.|+|||||.|.+..||..|+..|++.. +-| ..+
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 3446799999999999999999999999999999999998 568999999999999999999999998753 222 333
Q ss_pred cccccccCc-----------------------------------------------------------------------
Q 006316 112 RIMYSYRDP----------------------------------------------------------------------- 120 (650)
Q Consensus 112 ~v~~s~~~~----------------------------------------------------------------------- 120 (650)
-|.+.+.+.
T Consensus 94 VVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ang 173 (371)
T KOG0146|consen 94 VVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANG 173 (371)
T ss_pred EEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcc
Confidence 343332210
Q ss_pred --------------------------------------------------------------------------------
Q 006316 121 -------------------------------------------------------------------------------- 120 (650)
Q Consensus 121 -------------------------------------------------------------------------------- 120 (650)
T Consensus 174 l~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 174 LAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQY 253 (371)
T ss_pred cccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHH
Confidence
Q ss_pred -------------------------ccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEE
Q 006316 121 -------------------------TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQ 174 (650)
Q Consensus 121 -------------------------~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~ 174 (650)
.......|||||..||.+..+.||..+|-.||.|.+.||..| .+..||.|+||.
T Consensus 254 ~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 254 AAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEe
Confidence 001223468999999999999999999999999999999999 678899999999
Q ss_pred ECCHHHHHHHHHhhCCceecCeeeEEcccccc
Q 006316 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 175 F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 206 (650)
|.+..+|..||..+||+.|.=+++.|.....+
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 99999999999999999999999988654433
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.73 E-value=8.2e-18 Score=168.71 Aligned_cols=172 Identities=28% Similarity=0.520 Sum_probs=152.7
Q ss_pred CCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcccc
Q 006316 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204 (650)
Q Consensus 126 ~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 204 (650)
..+.|||++|+++++++.|++.|+.||+|.+|.+++| .+++++||+||+|++.+...+++. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5678999999999999999999999999999999999 679999999999999999988885 35677899999999988
Q ss_pred cccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCc
Q 006316 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKK 283 (650)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~ 283 (650)
++.+............+||++|+.++++++++++|++||.|..+.++.| ...++++|+||.|.+++++.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8877666555556778999999999999999999999999999999888 567899999999999998888775 56677
Q ss_pred cCCeeEEEecchhhhH
Q 006316 284 FDDKEWYVGKAQKKYE 299 (650)
Q Consensus 284 ~~g~~l~v~~a~~~~~ 299 (650)
+.++.+.|.+|.++..
T Consensus 163 ~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEV 178 (311)
T ss_pred ecCceeeEeeccchhh
Confidence 9999999999988654
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=6.4e-17 Score=143.86 Aligned_cols=149 Identities=19% Similarity=0.337 Sum_probs=125.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
.+.+++|||+|||.+|.|.+|.++|.+||.|..|.+.. ....-+||||+|++..||+.|+.--++-.++|..|+|.+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~---r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN---RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEecc---CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 35679999999999999999999999999999998753 234457999999999999999988899999999999998
Q ss_pred cccCccc------------------------ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEE
Q 006316 116 SYRDPTI------------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYG 171 (650)
Q Consensus 116 s~~~~~~------------------------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~a 171 (650)
.....+. .+....+|.|.+||++-+..+|++.+...|.|.-..+.+| |++
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~G 153 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVG 153 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cce
Confidence 6543111 0111236999999999999999999999999977777654 589
Q ss_pred EEEECCHHHHHHHHHhhCCcee
Q 006316 172 FVQFDNEESAKSAIDKLNGMLL 193 (650)
Q Consensus 172 fV~F~~~e~A~~Ai~~lng~~i 193 (650)
.|+|...|+-+-|+.+|....+
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeehhhHHHHHHhhccccc
Confidence 9999999999999999876554
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=5.7e-16 Score=153.84 Aligned_cols=248 Identities=17% Similarity=0.274 Sum_probs=190.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCC--cccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK--PIRIMY 115 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~--~i~v~~ 115 (650)
+--+++|+|+-..|+-+.|+++|++||.|..|.-.....+- .|+|.|.+.+.|..|...|++.-|..- .+||.+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~F----QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGF----QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccch----hhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 34678899999999999999999999999999887654432 699999999999999999998877554 445554
Q ss_pred ccc-------------C---ccccc---------------------------------------------CCCceeEecC
Q 006316 116 SYR-------------D---PTIRK---------------------------------------------SGAGNIFIKN 134 (650)
Q Consensus 116 s~~-------------~---~~~~~---------------------------------------------~~~~~l~V~n 134 (650)
|.- | +.+.. +....|.|.|
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 421 0 00000 0123466777
Q ss_pred CC-cccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccccccccccc
Q 006316 135 LD-KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213 (650)
Q Consensus 135 Lp-~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~ 213 (650)
|- ..+|.+.|..+|+.||+|..+++..+ .+..|+|+|.+...|.-|++.|+|..|.|++|+|.............
T Consensus 305 ln~~~VT~d~LftlFgvYGdVqRVkil~n----kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~e 380 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFGVYGDVQRVKILYN----KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPRE 380 (492)
T ss_pred CchhccchhHHHHHHhhhcceEEEEeeec----CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCC
Confidence 74 56899999999999999999999886 44679999999999999999999999999999997654322111110
Q ss_pred ----------------------ccccc-------cceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEE
Q 006316 214 ----------------------DKTRF-------NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264 (650)
Q Consensus 214 ----------------------~~~~~-------~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV 264 (650)
...++ ..+...|+|.++++|++++.|...|...+...... +.+.++++
T Consensus 381 gq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~ 457 (492)
T KOG1190|consen 381 GQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALP 457 (492)
T ss_pred CCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeec
Confidence 01111 24678999999999999999999887655543332 34669999
Q ss_pred EeCChhhHHHHHHHHcCCccCCe-eEEEecchh
Q 006316 265 NFDDPDDAARSVEALNGKKFDDK-EWYVGKAQK 296 (650)
Q Consensus 265 ~f~~~~~A~~Ai~~l~g~~~~g~-~l~v~~a~~ 296 (650)
.+++.|+|..|+-.++...+... .++|++++.
T Consensus 458 q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 458 QLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999988887755 788887654
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.3e-16 Score=167.48 Aligned_cols=257 Identities=22% Similarity=0.424 Sum_probs=197.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhcC-----------C-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHccc
Q 006316 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQM-----------G-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100 (650)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~-----------G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ 100 (650)
....++.+.+||++++..++|+..-.+|+.- | .|.++.++..+. +||++|.+.++|..|+ .
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n------fa~ie~~s~~~at~~~-~ 241 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN------FAFIEFRSISEATEAM-A 241 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc------ceeEEecCCCchhhhh-c
Confidence 3345678999999999999999999999763 3 488888887754 9999999999999999 6
Q ss_pred ccCccCCCCcccccccccCc-----------------c----cccCCCceeEecCCCcccchHHHHhhhcccCceeEEEE
Q 006316 101 LNFTPLNGKPIRIMYSYRDP-----------------T----IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159 (650)
Q Consensus 101 ln~~~i~g~~i~v~~s~~~~-----------------~----~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v 159 (650)
+++..+.|.++++......- . ........+||++||..+++.++.++...||.+..+.+
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l 321 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL 321 (500)
T ss_pred ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhee
Confidence 68888999988885322110 0 01112346999999999999999999999999999999
Q ss_pred eeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccccccccccccc------------------ccccc
Q 006316 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK------------------TRFNN 220 (650)
Q Consensus 160 ~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~~~------------------~~~~~ 220 (650)
..| .+|.++||||.+|.+......|+..|||+.+.++.+.|..+............ .....
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~V 401 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEV 401 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchh
Confidence 999 56899999999999999999999999999999999999766443222211111 00011
Q ss_pred eeccCCC--CCC-CH-------HHHHHHhcccCceeEEEEEeC-CC---CCcceeEEEEeCChhhHHHHHHHHcCCccCC
Q 006316 221 VYVKNLS--ETT-TE-------DDLKKIFGEFGIITSTAVMRD-AD---GKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286 (650)
Q Consensus 221 l~V~nlp--~~~-t~-------e~l~~~F~~~G~i~~~~v~~~-~~---g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g 286 (650)
|.+.|+- .+. ++ |+++.-|++||.|.+|.+.++ .+ ....|..||+|.+.+++++|...|+|.+|.+
T Consensus 402 l~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 402 LCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred hhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 2222220 000 11 445666889999999999887 33 2356788999999999999999999999999
Q ss_pred eeEEEecchh
Q 006316 287 KEWYVGKAQK 296 (650)
Q Consensus 287 ~~l~v~~a~~ 296 (650)
+.+...+...
T Consensus 482 RtVvtsYyde 491 (500)
T KOG0120|consen 482 RTVVASYYDE 491 (500)
T ss_pred cEEEEEecCH
Confidence 9988877654
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.70 E-value=4.4e-17 Score=168.31 Aligned_cols=180 Identities=24% Similarity=0.422 Sum_probs=150.8
Q ss_pred ccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecc
Q 006316 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (650)
Q Consensus 216 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 294 (650)
...+++|+-.+....+.-+|.++|+.+|.|.++.++.| ..++++|.+||+|.+.+....|+ .|.|..+.|..+.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 34567888889999999999999999999999999998 46789999999999999998888 69999999999999877
Q ss_pred hhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHH
Q 006316 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAE 373 (650)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~ 373 (650)
.....+.......+. ...-..+...|||+||..++++++|+.+|+.||.|+.|.+..|. +|+++|||||+|.+.+
T Consensus 256 Eaeknr~a~~s~a~~----~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 256 EAEKNRAANASPALQ----GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred HHHHHHHHhcccccc----ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 654444222211111 01111222339999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHHhCCceecCeeEEEEecchh
Q 006316 374 EASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 374 ~A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
+|.+|+..|||.++.|+.|+|.....+
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999886543
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=3.1e-16 Score=145.75 Aligned_cols=158 Identities=24% Similarity=0.463 Sum_probs=134.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHH----HHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYD----LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~----~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
++.+|||.||...+..++|+. +|++||.|++|.+++ |.+.+|.|||.|.+.+.|..|+..|++..+.|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999877 999999999999985 6788999999999999999999999999999999999
Q ss_pred cccccCcccc------------------------------------------------cCCCceeEecCCCcccchHHHH
Q 006316 114 MYSYRDPTIR------------------------------------------------KSGAGNIFIKNLDKSIDNKALH 145 (650)
Q Consensus 114 ~~s~~~~~~~------------------------------------------------~~~~~~l~V~nLp~~i~~~~L~ 145 (650)
.++..+.+.. ......+|+.|||.+++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 9876543211 1112358999999999999999
Q ss_pred hhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceec-CeeeEEcc
Q 006316 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGP 202 (650)
Q Consensus 146 ~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~-g~~l~v~~ 202 (650)
.+|.+|.....+++... .++.|||+|.+...|..|...+++..|. ...+.+..
T Consensus 165 ~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred HHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 99999998888888764 4678999999999999999999988776 55555543
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.69 E-value=1.2e-16 Score=144.82 Aligned_cols=89 Identities=36% Similarity=0.614 Sum_probs=82.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
......+++|||+|||+++||++|+++|++||.|.+|++++|+.|++++|||||+|.+.++|++|++.||+..|+|++|+
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33345678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcc
Q 006316 113 IMYSYRDPT 121 (650)
Q Consensus 113 v~~s~~~~~ 121 (650)
|.|+...+.
T Consensus 108 V~~a~~~~~ 116 (144)
T PLN03134 108 VNPANDRPS 116 (144)
T ss_pred EEeCCcCCC
Confidence 999875543
No 55
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.69 E-value=9.8e-16 Score=156.35 Aligned_cols=249 Identities=18% Similarity=0.272 Sum_probs=184.7
Q ss_pred ceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccccc
Q 006316 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207 (650)
Q Consensus 128 ~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 207 (650)
.-|.+++||+++|++||+++|+.+ .|.++++.+ .+|+..|-|||+|++++++.+|+++ +-..+..+-|.|-......
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCcc
Confidence 458889999999999999999998 677765544 5688999999999999999999964 6677778888885543221
Q ss_pred cc-----ccccccccccceeccCCCCCCCHHHHHHHhcccCceeE-EEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcC
Q 006316 208 ER-----ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281 (650)
Q Consensus 208 ~~-----~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~-~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g 281 (650)
.. ...........|.+.+||..++++||.++|+-.-.+.. +.+..+..+++.|-|||+|++.+.|++|+.. |.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 11 01111124456899999999999999999998777776 5567778899999999999999999999974 45
Q ss_pred CccCCeeEEEecchhhhHHHHHHhh--------hhhh--------------------hh---------------------
Q 006316 282 KKFDDKEWYVGKAQKKYEREMELKG--------KFEQ--------------------SL--------------------- 312 (650)
Q Consensus 282 ~~~~g~~l~v~~a~~~~~~~~~~~~--------~~~~--------------------~~--------------------- 312 (650)
..|..+-+.|-++.....+...... .++. ..
T Consensus 167 e~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~ 246 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYG 246 (510)
T ss_pred HhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccc
Confidence 6677777777776654443332000 0000 00
Q ss_pred --------------hh-hhh-----------ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEE
Q 006316 313 --------------KE-TAD-----------KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366 (650)
Q Consensus 313 --------------~~-~~~-----------~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~f 366 (650)
.+ ... ...+..++.+.||+..++.++.++|+..-. ..|.|...++|+..|-|+
T Consensus 247 ~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig~dGr~TGEAd 325 (510)
T KOG4211|consen 247 NFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEIGPDGRATGEAD 325 (510)
T ss_pred cccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEeCCCCccCCcce
Confidence 00 000 001135788899999999999999998644 488888888999999999
Q ss_pred EEcCCHHHHHHHHHH
Q 006316 367 VAFSTAEEASKALTE 381 (650)
Q Consensus 367 V~f~~~~~A~~A~~~ 381 (650)
|+|.|.++|..|+.+
T Consensus 326 veF~t~edav~Amsk 340 (510)
T KOG4211|consen 326 VEFATGEDAVGAMGK 340 (510)
T ss_pred eecccchhhHhhhcc
Confidence 999999999999863
No 56
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=8.9e-16 Score=161.25 Aligned_cols=268 Identities=20% Similarity=0.374 Sum_probs=196.2
Q ss_pred ceeEecCCCcccchHHHHhhhccc-----------C-ceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecC
Q 006316 128 GNIFIKNLDKSIDNKALHDTFSTF-----------G-NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (650)
Q Consensus 128 ~~l~V~nLp~~i~~~~L~~~Fs~~-----------G-~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g 195 (650)
..++|++++..+++++...+|..- | .+++|.+.. .++++|++|.+.++|..++ .+++..+.|
T Consensus 176 ~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~-~~~~~~f~g 249 (500)
T KOG0120|consen 176 RRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAM-ALDGIIFEG 249 (500)
T ss_pred hhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhh-cccchhhCC
Confidence 468999999999999999988643 2 366666544 5789999999999999998 578888888
Q ss_pred eeeEEcccccccccc-----------------cccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCC
Q 006316 196 KQVFVGPFLRKQERE-----------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGK 257 (650)
Q Consensus 196 ~~l~v~~~~~~~~~~-----------------~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~ 257 (650)
..+.+.......... .......-+.+||++||..++++.++++...||.+....+..+ .+|.
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 777664322111100 0011122357999999999999999999999999999988888 5589
Q ss_pred cceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHHHHhhhhh---hhhhh---hhhccCCceeEEecCC-
Q 006316 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE---QSLKE---TADKFEGLNLYVKNLD- 330 (650)
Q Consensus 258 srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~l~V~nl~- 330 (650)
++||+|.+|.+......|+..|||..+.++.|.|..+............... ..... .........|.+.|+=
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt 409 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVT 409 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCC
Confidence 9999999999999999999999999999999999888654332221111000 00000 1112222334433331
Q ss_pred -CCC-C-------HHHHHHHHhhcCCeEEEEEeeC-CC---CCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 331 -DSI-S-------DDKLKELFSEFGTITSCKVMRD-PN---GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 331 -~~~-t-------~~~l~~~F~~~G~i~~~~i~~~-~~---g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
++. . -|+++..+++||.|++|.+.++ .+ ....|..||+|.+.+++++|.++|+|+.|.++.+..+|.
T Consensus 410 ~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 410 PDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 111 1 1566777889999999999988 32 346778999999999999999999999999999999987
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
....
T Consensus 490 deDk 493 (500)
T KOG0120|consen 490 DEDK 493 (500)
T ss_pred CHHH
Confidence 6543
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=2.3e-15 Score=136.48 Aligned_cols=82 Identities=32% Similarity=0.558 Sum_probs=77.2
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
..+++|||+||++++|+++|+++|++||.|++++++.+. +++++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 456789999999999999999999999999999999886 7899999999999999999999999999999999999998
Q ss_pred chh
Q 006316 398 QRK 400 (650)
Q Consensus 398 ~~~ 400 (650)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 58
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.60 E-value=1.1e-14 Score=135.48 Aligned_cols=174 Identities=23% Similarity=0.406 Sum_probs=142.3
Q ss_pred cceeccCCCCCCCHHHHHH----HhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecc
Q 006316 219 NNVYVKNLSETTTEDDLKK----IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (650)
Q Consensus 219 ~~l~V~nlp~~~t~e~l~~----~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 294 (650)
.++||.||...+..++|+. +|+.||.|.+|...+ +.+.||-|||.|.+.+.|..|+..|+|..+.|+.+.+.+|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 3899999999999999988 999999999988765 4578999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhhhhhhh-----------------h---------------hhhccCCceeEEecCCCCCCHHHHHHHH
Q 006316 295 QKKYEREMELKGKFEQSLK-----------------E---------------TADKFEGLNLYVKNLDDSISDDKLKELF 342 (650)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-----------------~---------------~~~~~~~~~l~V~nl~~~~t~~~l~~~F 342 (650)
..+..-.......+....+ . .....+...||+.|||.+++.+.|..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 8765433221110000000 0 1113455679999999999999999999
Q ss_pred hhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec-CeeEEEEecc
Q 006316 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQ 398 (650)
Q Consensus 343 ~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~V~~a~ 398 (650)
+.|...+.++++... ++.|||+|.+...|..|...+.|..+- ...+.|.+++
T Consensus 168 ~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999998763 469999999999999999999998885 7778888765
No 59
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.59 E-value=3.6e-13 Score=132.81 Aligned_cols=286 Identities=15% Similarity=0.174 Sum_probs=196.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
....+..++||+.-+..+|..+|....-....++..-...++..|.+.|.|.+.|.-+-|+++ +...+.++.|.|....
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 356788999999999999999997753333333333336678889999999999999999966 7677888999887654
Q ss_pred cCccc--------------ccCCCceeEecCCCcccchHHHHhhhccc----CceeEEEEeeCCCCCcccEEEEEECCHH
Q 006316 118 RDPTI--------------RKSGAGNIFIKNLDKSIDNKALHDTFSTF----GNILSCKVATDSLGQSRGYGFVQFDNEE 179 (650)
Q Consensus 118 ~~~~~--------------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~----G~I~~~~v~~d~~g~skg~afV~F~~~e 179 (650)
.+.-+ .+.+.-.|.+++||.+++..++.++|..- |..+.+.+++..+|+..|-|||.|..++
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee 217 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEE 217 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHH
Confidence 43222 12223357889999999999999999632 3566777888889999999999999999
Q ss_pred HHHHHHHhhCCceecCeeeEEcccccccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcc
Q 006316 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259 (650)
Q Consensus 180 ~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~sr 259 (650)
+|..|+.+.... +.-+-|. || ..|..++.....++-.- -++..
T Consensus 218 ~aq~aL~khrq~-iGqRYIE---------------------lF------RSTaaEvqqvlnr~~s~---pLi~~------ 260 (508)
T KOG1365|consen 218 DAQFALRKHRQN-IGQRYIE---------------------LF------RSTAAEVQQVLNREVSE---PLIPG------ 260 (508)
T ss_pred HHHHHHHHHHHH-HhHHHHH---------------------HH------HHhHHHHHHHHHhhccc---cccCC------
Confidence 999999763221 1111111 11 11233333333322100 00000
Q ss_pred eeEEEEeCChhhHHHHHHHHcCCc-cCC-eeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHH
Q 006316 260 CFGFVNFDDPDDAARSVEALNGKK-FDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337 (650)
Q Consensus 260 g~afV~f~~~~~A~~Ai~~l~g~~-~~g-~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 337 (650)
++.. +.+ ....+... ...-+|.+++||++.+.||
T Consensus 261 --------------------~~sp~~p~~p~~~~p~~------------------------~~kdcvRLRGLPy~AtvEd 296 (508)
T KOG1365|consen 261 --------------------LTSPLLPGGPARLVPPT------------------------RSKDCVRLRGLPYEATVED 296 (508)
T ss_pred --------------------CCCCCCCCCccccCCCC------------------------CCCCeeEecCCChhhhHHH
Confidence 0000 000 00000000 0123799999999999999
Q ss_pred HHHHHhhcCC-eEE--EEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHHHHH
Q 006316 338 LKELFSEFGT-ITS--CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405 (650)
Q Consensus 338 l~~~F~~~G~-i~~--~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r~~ 405 (650)
|.++|..|-. |+. |.+..+..|+..|-|||+|.+.|+|..|..+.|++...+|-|.|--+.-++..+.
T Consensus 297 IL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~v 367 (508)
T KOG1365|consen 297 ILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNEV 367 (508)
T ss_pred HHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHHH
Confidence 9999999964 444 7777888899999999999999999999999998888888888887777666543
No 60
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=5.2e-14 Score=125.45 Aligned_cols=152 Identities=24% Similarity=0.363 Sum_probs=125.4
Q ss_pred CCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcccc
Q 006316 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204 (650)
Q Consensus 125 ~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 204 (650)
.+.++|+|+|||.+|-+++|.++|.+||.|..|.+.... | ...||||+|++..+|+.||..-+|..+.|+.|.|+...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-G-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-C-CCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 356889999999999999999999999999998875532 2 46799999999999999999999999999999997653
Q ss_pred cccc---ccc-----------------ccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEE
Q 006316 205 RKQE---RES-----------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264 (650)
Q Consensus 205 ~~~~---~~~-----------------~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV 264 (650)
.-.. +.. .........|.|.+||.+-+.+||++.+.+-|.|-...+.+| |++.|
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV 155 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVV 155 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceee
Confidence 2210 000 001122356999999999999999999999999998888876 48899
Q ss_pred EeCChhhHHHHHHHHcCCcc
Q 006316 265 NFDDPDDAARSVEALNGKKF 284 (650)
Q Consensus 265 ~f~~~~~A~~Ai~~l~g~~~ 284 (650)
+|.+.++.+-|+.+|....+
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeehhhHHHHHHhhccccc
Confidence 99999999999999987654
No 61
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.55 E-value=7.8e-13 Score=130.11 Aligned_cols=242 Identities=21% Similarity=0.286 Sum_probs=179.9
Q ss_pred CCCCCEEEEcCCC--CCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCC--cc
Q 006316 36 QFVSTSLYVGDLD--LSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK--PI 111 (650)
Q Consensus 36 ~~~~~~L~V~nLp--~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~--~i 111 (650)
..++..|.+.=|. +.+|-+.|+.++...|+|..|-|.+. ++- .|.|+|++.+.|++|.+.||+..|..- .+
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeE
Confidence 3456677766665 47999999999999999999999986 332 799999999999999999999887653 34
Q ss_pred cccccccC----------------ccc-----------------------------------------------------
Q 006316 112 RIMYSYRD----------------PTI----------------------------------------------------- 122 (650)
Q Consensus 112 ~v~~s~~~----------------~~~----------------------------------------------------- 122 (650)
+|.+++.+ +..
T Consensus 192 KIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~ 271 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDG 271 (494)
T ss_pred EEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccc
Confidence 44443221 000
Q ss_pred -cc----------CCCceeEecCCCcc-cchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCC
Q 006316 123 -RK----------SGAGNIFIKNLDKS-IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190 (650)
Q Consensus 123 -~~----------~~~~~l~V~nLp~~-i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng 190 (650)
+. ...+-+.|.+|... ++.+.|.++|..||+|+.+++++. ..|.|.|++.+..+.++|+..||+
T Consensus 272 ~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT----k~gtamVemgd~~aver~v~hLnn 347 (494)
T KOG1456|consen 272 YRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT----KPGTAMVEMGDAYAVERAVTHLNN 347 (494)
T ss_pred cccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec----ccceeEEEcCcHHHHHHHHHHhcc
Confidence 00 00123788999875 577999999999999999999987 456799999999999999999999
Q ss_pred ceecCeeeEEccccccc------------------------cccccc-------ccccccceeccCCCCCCCHHHHHHHh
Q 006316 191 MLLNDKQVFVGPFLRKQ------------------------ERESTA-------DKTRFNNVYVKNLSETTTEDDLKKIF 239 (650)
Q Consensus 191 ~~i~g~~l~v~~~~~~~------------------------~~~~~~-------~~~~~~~l~V~nlp~~~t~e~l~~~F 239 (650)
..+.|.+|.|..+.... .|-... ....++.|..-|.|..+|||.|.++|
T Consensus 348 ~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ 427 (494)
T KOG1456|consen 348 IPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGIC 427 (494)
T ss_pred CccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHh
Confidence 99999999885432110 000000 01122457788999999999999999
Q ss_pred cccCc-eeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCe
Q 006316 240 GEFGI-ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287 (650)
Q Consensus 240 ~~~G~-i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 287 (650)
...+. -.++++...++-++ ..+.++|++.++|..|+..+|-..+.+.
T Consensus 428 nek~v~~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 428 NEKDVPPTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred hhcCCCcceEEeeccccccc-ccceeeeehHHHHHHHHHHhccccccCC
Confidence 76553 45566665554333 3689999999999999999998877653
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=1.7e-14 Score=114.39 Aligned_cols=70 Identities=41% Similarity=0.788 Sum_probs=67.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 42 L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
|||+|||+++|+++|+++|+.||.|..+.+.++ .++++.|||||.|.+.++|++|++.|++..|+|+.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 7889999999999999999999999999999999885
No 63
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=5.3e-14 Score=111.59 Aligned_cols=70 Identities=44% Similarity=0.797 Sum_probs=67.6
Q ss_pred eEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEE
Q 006316 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (650)
Q Consensus 324 l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 393 (650)
|||+|||.++|+++|+++|+.||.|..+++..+..+.++|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988889999999999999999999999999999999885
No 64
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.52 E-value=4.2e-13 Score=131.30 Aligned_cols=180 Identities=19% Similarity=0.305 Sum_probs=140.1
Q ss_pred ccccceeccCCCCCCCHHHHHHHhcccCcee--------EEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCe
Q 006316 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIIT--------STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287 (650)
Q Consensus 216 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~--------~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 287 (650)
...++|||+|||.++|.+++.++|+++|.|. .|++.++..|+.+|-|+|+|-..++...|+..|++..+.|.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3457799999999999999999999999776 47888999999999999999999999999999999999999
Q ss_pred eEEEecchhhhH--HH---------------HHHhhhh-hhh--hhhhhhccCCceeEEecCCC----CCC-------HH
Q 006316 288 EWYVGKAQKKYE--RE---------------MELKGKF-EQS--LKETADKFEGLNLYVKNLDD----SIS-------DD 336 (650)
Q Consensus 288 ~l~v~~a~~~~~--~~---------------~~~~~~~-~~~--~~~~~~~~~~~~l~V~nl~~----~~t-------~~ 336 (650)
.+.|.+|+=... .. ...+.+. +.. ..........++|.++|+-. ..+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999999852110 00 0000000 000 00111223456799999842 222 47
Q ss_pred HHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 337 ~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
+|++.+++||.|++|.|... ...|.+-|.|.+.++|..+|+.|+|+.|+||.|..++..
T Consensus 292 dl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 88888999999999988744 356799999999999999999999999999999887764
No 65
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.51 E-value=2.7e-13 Score=124.60 Aligned_cols=155 Identities=20% Similarity=0.321 Sum_probs=117.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCC---CCccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN---GKPIR 112 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~-G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~---g~~i~ 112 (650)
..-++|||++||.++.-.||+.+|+.| |--.+..-..++...-++-+|||.|.+..+|..|+..||+..|+ +..++
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 346899999999999999999999998 43333333334333345569999999999999999999998774 67788
Q ss_pred ccccccCcccc---------------------------------------------------------------------
Q 006316 113 IMYSYRDPTIR--------------------------------------------------------------------- 123 (650)
Q Consensus 113 v~~s~~~~~~~--------------------------------------------------------------------- 123 (650)
|.+++.+....
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 87654321110
Q ss_pred ---------------cCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhh
Q 006316 124 ---------------KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188 (650)
Q Consensus 124 ---------------~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~l 188 (650)
.+...+|||.||..++++++|+.+|+.|-....+++... . ....||++|++.+.|..|+..|
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~--g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-G--GMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-C--CcceEeecHHHHHHHHHHHHHh
Confidence 001135999999999999999999999987665555432 2 2347999999999999999999
Q ss_pred CCceec
Q 006316 189 NGMLLN 194 (650)
Q Consensus 189 ng~~i~ 194 (650)
+|..|.
T Consensus 269 qg~~~s 274 (284)
T KOG1457|consen 269 QGNLLS 274 (284)
T ss_pred hcceec
Confidence 998763
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4e-14 Score=132.14 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
.+++|.|.||+.+++|.+|.++|..||+|..|.+.+|+.|+.|+|||||.|.+.+||.+|++.||+.-++.-.|+|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 006316 118 RD 119 (650)
Q Consensus 118 ~~ 119 (650)
..
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 53
No 67
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.2e-14 Score=134.09 Aligned_cols=148 Identities=22% Similarity=0.454 Sum_probs=127.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccccC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~ 119 (650)
..+||++||+.+.+.+|.++|..||.|..|.+.. ||+||+|++..||..|+..||+..|.|..+.++|....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999987754 48999999999999999999999999988888887631
Q ss_pred -----c-c-------c-----ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHH
Q 006316 120 -----P-T-------I-----RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181 (650)
Q Consensus 120 -----~-~-------~-----~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A 181 (650)
. . . .....+.++|.++...+...+|.+.|+.+|.+..... ..+++||+|++.++|
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 0 0 1 1123456899999999999999999999999844332 567899999999999
Q ss_pred HHHHHhhCCceecCeeeEEcc
Q 006316 182 KSAIDKLNGMLLNDKQVFVGP 202 (650)
Q Consensus 182 ~~Ai~~lng~~i~g~~l~v~~ 202 (650)
..|++.|++..+.++.|.+..
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhcchhccchhhcCceeeecc
Confidence 999999999999999999943
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.2e-14 Score=118.64 Aligned_cols=83 Identities=28% Similarity=0.503 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
...|++||||||...++|+.|+++|+++|+|..|.+-.|+.+...-|||||+|.+.+||+.|+..+|++.++.++|+|-|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 006316 116 SYR 118 (650)
Q Consensus 116 s~~ 118 (650)
..-
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 654
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=7.5e-14 Score=135.43 Aligned_cols=82 Identities=26% Similarity=0.451 Sum_probs=76.2
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
....+|+|.|||+..-|-||+.+|.+||.|.+|.|+.++.| |||||||+|++.+||++|..+|||..+.||+|.|..|.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34568999999999999999999999999999999988766 79999999999999999999999999999999999997
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
.+-
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 663
No 70
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.7e-13 Score=127.75 Aligned_cols=80 Identities=30% Similarity=0.476 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
.-++||||+|+|.++.+.|+++|++||.|++..|+.|+.|+||+||+||.|.+.+.|.+|++. -.-.|+||+..+..+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 458999999999999999999999999999999999999999999999999999999999976 4457999999888764
Q ss_pred c
Q 006316 118 R 118 (650)
Q Consensus 118 ~ 118 (650)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 3
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.5e-13 Score=122.00 Aligned_cols=77 Identities=29% Similarity=0.501 Sum_probs=71.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~ 118 (650)
.++||||||+.++++.||+..|+.||+|.+|+|.+. .-|||||+|++..||+.|+..|++..|+|..|+|+++.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 689999999999999999999999999999999874 458999999999999999999999999999999998865
Q ss_pred Cc
Q 006316 119 DP 120 (650)
Q Consensus 119 ~~ 120 (650)
.+
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 44
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=6.5e-13 Score=105.42 Aligned_cols=70 Identities=36% Similarity=0.710 Sum_probs=65.4
Q ss_pred eEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEE
Q 006316 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (650)
Q Consensus 324 l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 393 (650)
|||+|||+++++++|+++|+.||.|..+++..+++|.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988899999999999999999999999999999999875
No 73
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.43 E-value=1.3e-12 Score=137.82 Aligned_cols=163 Identities=10% Similarity=0.038 Sum_probs=125.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
..+.+-+.+.+.+..+.+++++|... .|-++.+..+...+...|.+||.|...+++++|+.. |...+..|.+.|....
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 35677788999999999999999764 456777777766666689999999999999999955 7777777777774321
Q ss_pred cCc----------------------------c---------cccCCCceeEecCCCcccchHHHHhhhcccCceeE-EEE
Q 006316 118 RDP----------------------------T---------IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CKV 159 (650)
Q Consensus 118 ~~~----------------------------~---------~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~-~~v 159 (650)
.+. . ........|||..||..+++.++.++|+..-.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 110 0 01112346999999999999999999999888887 667
Q ss_pred eeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcc
Q 006316 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202 (650)
Q Consensus 160 ~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 202 (650)
....+++.++-|||.|.+++++.+|...-..+.+..+.|.|..
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 6668888899999999999988888876555556666777743
No 74
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.3e-13 Score=125.35 Aligned_cols=81 Identities=32% Similarity=0.569 Sum_probs=77.5
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..++|.|.||+.+++|++|+++|.+||.|.++.|.+|+ +|.+||||||+|.++++|.+||+.|||+-.+.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999987 89999999999999999999999999999999999999998
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 65
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.2e-13 Score=130.20 Aligned_cols=166 Identities=30% Similarity=0.456 Sum_probs=131.6
Q ss_pred ceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhH
Q 006316 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299 (650)
Q Consensus 220 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 299 (650)
.+||++|+..+.+.++..+|..||.+..+.+.. ||+||+|++..+|..|+..++++.+.+..+.+.++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 589999999999999999999999999998763 5999999999999999999999999998888887764311
Q ss_pred HHHHHhhhh--hhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHH
Q 006316 300 REMELKGKF--EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377 (650)
Q Consensus 300 ~~~~~~~~~--~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~ 377 (650)
....-.... .....-.......+.|.|.|+...+++.+|.+.|+.+|.++.... .++++||+|++.++|.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhh
Confidence 110000000 001111111234568999999999999999999999999966655 34599999999999999
Q ss_pred HHHHhCCceecCeeEEEEecch
Q 006316 378 ALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 378 A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
|+..+++..+.++.|.+...-.
T Consensus 149 a~~~l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKNSR 170 (216)
T ss_pred cchhccchhhcCceeeecccCc
Confidence 9999999999999999955433
No 76
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.9e-14 Score=126.95 Aligned_cols=78 Identities=27% Similarity=0.523 Sum_probs=75.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
.++.|||||||.++||.+|.-+||+||.|++|.++||+.||+|+||||+.|++..+..-|++.||+..|.||.|||-.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999964
No 77
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.9e-13 Score=126.20 Aligned_cols=77 Identities=29% Similarity=0.489 Sum_probs=70.9
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
++|||++|+|++..|+|+++|++||+|+++.|+.|+ +|+|||||||+|.|.+.|++|.+.- +-.|+||+..+++|.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 589999999999999999999999999999999998 8999999999999999999998753 4688999999988764
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.41 E-value=4.1e-12 Score=124.46 Aligned_cols=166 Identities=19% Similarity=0.304 Sum_probs=133.3
Q ss_pred CceeEecCCCcccchHHHHhhhcccCcee--------EEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeee
Q 006316 127 AGNIFIKNLDKSIDNKALHDTFSTFGNIL--------SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198 (650)
Q Consensus 127 ~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~--------~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l 198 (650)
..+|||.|||.++|.+++.++|+.+|.|. .|++..+..|.-||-|++.|-..++...|++.|++..+.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 45799999999999999999999999764 4899999999999999999999999999999999999999999
Q ss_pred EEcccccc---------ccc--c---------------------cccccccccceeccCCCC----CCC-------HHHH
Q 006316 199 FVGPFLRK---------QER--E---------------------STADKTRFNNVYVKNLSE----TTT-------EDDL 235 (650)
Q Consensus 199 ~v~~~~~~---------~~~--~---------------------~~~~~~~~~~l~V~nlp~----~~t-------~e~l 235 (650)
.|..+.-. ... . .........+|.++|+=. ..+ .++|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 99654211 000 0 000112224577888732 122 4667
Q ss_pred HHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 236 ~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
++-+++||.|.+++|... ...|.+-|.|.+.+.|..||..|+|+.|.|+.|......
T Consensus 294 ~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 788999999999988754 346788999999999999999999999999999886554
No 79
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.41 E-value=1.3e-11 Score=132.25 Aligned_cols=78 Identities=28% Similarity=0.486 Sum_probs=72.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
..-+++|||+.|+..+++.||.++|+.||.|.+|.++.. ||||||++....+|.+|+.+|++..+.++.|+|.|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 345678999999999999999999999999999998865 789999999999999999999999999999999998
Q ss_pred chh
Q 006316 398 QRK 400 (650)
Q Consensus 398 ~~~ 400 (650)
..+
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 643
No 80
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=1.4e-12 Score=133.06 Aligned_cols=124 Identities=28% Similarity=0.563 Sum_probs=108.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc-
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY- 117 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~- 117 (650)
.++|||+|||.++|+++|+++|..||.|..|++..|+.+++++|||||.|.+.++|..|++.+++..|.|++|+|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999999899999999999999999999999999999999999999853
Q ss_pred ---cCccc------------------ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC
Q 006316 118 ---RDPTI------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD 162 (650)
Q Consensus 118 ---~~~~~------------------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d 162 (650)
..... .......+++.+++..++..++...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 11111 1122356899999999999999999999999976666554
No 81
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.40 E-value=4.3e-13 Score=106.42 Aligned_cols=70 Identities=29% Similarity=0.617 Sum_probs=64.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 42 L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
|||+|||+++++++|.++|+.+|.|..+++.+++. +.++|+|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 89999999999999999999999888999998874
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.37 E-value=1.4e-12 Score=126.33 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=70.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~ 118 (650)
.++|||+||++.+||++|+++|+.||.|.+|++++|.. +.|||||+|.+.++|+.|+ .||+..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999999853 4689999999999999999 5999999999999998753
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=2.8e-12 Score=124.23 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=69.5
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
.++|||+||++.+|+++|+++|+.||.|++|+|..+.. ++|||||+|.+.++|..|+. |+|..|.|+.|.|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 46899999999999999999999999999999998753 57999999999999999995 99999999999999754
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.36 E-value=8.2e-12 Score=114.94 Aligned_cols=156 Identities=17% Similarity=0.358 Sum_probs=119.1
Q ss_pred CCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCC--CcccEEEEEECCHHHHHHHHHhhCCceec---CeeeEE
Q 006316 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG--QSRGYGFVQFDNEESAKSAIDKLNGMLLN---DKQVFV 200 (650)
Q Consensus 126 ~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g--~skg~afV~F~~~e~A~~Ai~~lng~~i~---g~~l~v 200 (650)
..++|||.+||.++.-.||+.+|+.|-..+.+.+.....+ ..+.+|||.|.+..+|..|++.|||..++ +..+.+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999988888777665222 24579999999999999999999999875 556666
Q ss_pred ccccccccccccccc-----------------------------------------------------------------
Q 006316 201 GPFLRKQERESTADK----------------------------------------------------------------- 215 (650)
Q Consensus 201 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 215 (650)
+.+.+..++......
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 544332111100000
Q ss_pred ---------------ccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHc
Q 006316 216 ---------------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280 (650)
Q Consensus 216 ---------------~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~ 280 (650)
.--.+|||.||..++++++|+.+|+.|......++.. .+| ...+|++|++.+.|..|+..|.
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHHHHHHhh
Confidence 0003499999999999999999999998766665543 333 4589999999999999999998
Q ss_pred CCcc
Q 006316 281 GKKF 284 (650)
Q Consensus 281 g~~~ 284 (650)
|..+
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 8765
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=2.2e-12 Score=125.41 Aligned_cols=102 Identities=25% Similarity=0.467 Sum_probs=89.1
Q ss_pred cCccCCCCcccccccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHH
Q 006316 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181 (650)
Q Consensus 102 n~~~i~g~~i~v~~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A 181 (650)
++....|.++....+... ..+.+.++|+|.|||...-+-||+.+|.+||.|++|+|+.++.| |||||||+|++.+||
T Consensus 73 ~~~~t~g~~~~~~~st~s--~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~da 149 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNS--SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADA 149 (376)
T ss_pred CCCCCCCCccccCCCCcC--CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhH
Confidence 566677777776655433 23456679999999999999999999999999999999999888 899999999999999
Q ss_pred HHHHHhhCCceecCeeeEEcccccc
Q 006316 182 KSAIDKLNGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 182 ~~Ai~~lng~~i~g~~l~v~~~~~~ 206 (650)
++|-++|+|..+.|++|.|..+..+
T Consensus 150 dRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 150 DRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHhhcceeeceEEEEeccchh
Confidence 9999999999999999999877665
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.36 E-value=8.7e-13 Score=119.91 Aligned_cols=78 Identities=32% Similarity=0.500 Sum_probs=74.9
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
.+.|.|-||.+.++.++|+.+|++||.|-+|.|..|. ++.++|||||.|.+..+|+.|++.|+|.+++|+.|.|.+|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4579999999999999999999999999999999998 88999999999999999999999999999999999999885
No 87
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2e-12 Score=114.94 Aligned_cols=78 Identities=27% Similarity=0.474 Sum_probs=72.2
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...+.|||+||+..+++.||+.+|..||.|.+|.|-.. ..|||||+|+++.||..|+..|+|+.|+|..|.|.+..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 34678999999999999999999999999999999886 46799999999999999999999999999999999976
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
-+
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 44
No 88
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=3.1e-12 Score=103.41 Aligned_cols=85 Identities=22% Similarity=0.428 Sum_probs=75.6
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
..-++...+.|||+|||.++|.++.+++|.+||+|..|+|-..+.| +|.|||.|++..||.+|++.|++..+.++.+
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 3444566899999999999999999999999999999999876655 5899999999999999999999999999999
Q ss_pred cccccccC
Q 006316 112 RIMYSYRD 119 (650)
Q Consensus 112 ~v~~s~~~ 119 (650)
.|.+.+..
T Consensus 88 ~vlyyq~~ 95 (124)
T KOG0114|consen 88 VVLYYQPE 95 (124)
T ss_pred EEEecCHH
Confidence 99876544
No 89
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=3.3e-12 Score=129.79 Aligned_cols=124 Identities=19% Similarity=0.334 Sum_probs=91.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecch--hHHHHHcccccCccCCCCccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA--HEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~--~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
..+||||||.+++|+++|..+|+.||.|.+|.|+|+ |+ +|||||+|.+. +++.+|++.||+..|+|+.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 479999999999999999999999999999999965 55 79999999988 7899999999999999999999865
Q ss_pred ccCc---------ccccCCCceeEecCCCcc-cchHHHHhhhcccCceeEEEEeeCCCCCcccEEE
Q 006316 117 YRDP---------TIRKSGAGNIFIKNLDKS-IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGF 172 (650)
Q Consensus 117 ~~~~---------~~~~~~~~~l~V~nLp~~-i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~af 172 (650)
+..= .........+. ++.. .....|.-+|-+.+.|.++-+ ..+|+++ |.|
T Consensus 86 KP~YLeRLkrEReea~s~~~~~~k---l~k~~~e~~qLnifFPrLrKvKslPf--sGTGKHk-YSF 145 (759)
T PLN03213 86 KEHYLARLKREWEAASSTSDNTIK---APSDSPPATHLNIFFPRLRKVKAMPL--SGTGKHK-YSF 145 (759)
T ss_pred cHHHHHHHHHHHHHhhcccccccc---ccccCCccceeeEecccccccccccc--CCCccce-eee
Confidence 4320 00000111111 2221 355677778888888776433 3455443 444
No 90
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=9.5e-12 Score=100.60 Aligned_cols=82 Identities=27% Similarity=0.424 Sum_probs=74.3
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
..+.|||+|||+.+|.|+..++|.+||.|..|+|-... ..+|.|||.|++..+|.+|+..|+|..++++.|.|-+.+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 45679999999999999999999999999999987654 3689999999999999999999999999999999999876
Q ss_pred hHHH
Q 006316 400 KEER 403 (650)
Q Consensus 400 ~~~r 403 (650)
.+..
T Consensus 95 ~~~~ 98 (124)
T KOG0114|consen 95 EDAF 98 (124)
T ss_pred HHHH
Confidence 5543
No 91
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=4.1e-12 Score=122.06 Aligned_cols=86 Identities=22% Similarity=0.395 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCC
Q 006316 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (650)
Q Consensus 30 ~~~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~ 109 (650)
+++.+...+-++|||+-|+.+++|..|...|+.||+|..|++++|+.|++|+|||||+|++..|-..|.+..++..|+|+
T Consensus 92 ~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 44455567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 006316 110 PIRIMY 115 (650)
Q Consensus 110 ~i~v~~ 115 (650)
.|-|-.
T Consensus 172 ri~VDv 177 (335)
T KOG0113|consen 172 RILVDV 177 (335)
T ss_pred EEEEEe
Confidence 998854
No 92
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5e-12 Score=106.25 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=74.1
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
..+++|||+||...++||.|.++|+++|.|..|.+-.|+ +...-|||||+|.+.++|..|++-++|..++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 367899999999999999999999999999999777776 4457899999999999999999999999999999999987
Q ss_pred ch
Q 006316 398 QR 399 (650)
Q Consensus 398 ~~ 399 (650)
--
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 54
No 93
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.29 E-value=3.5e-12 Score=116.01 Aligned_cols=81 Identities=30% Similarity=0.460 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.-+.+|.|-||..-++.++|+.+|++||.|-+|.|.+|..|+.+.|||||.|.+..||+.|++.|++.+|+|+.|+|.++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 006316 117 Y 117 (650)
Q Consensus 117 ~ 117 (650)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 4
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=9.3e-12 Score=126.56 Aligned_cols=80 Identities=26% Similarity=0.442 Sum_probs=73.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCH--HHHHHHHHHhCCceecCeeEEEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA--EEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~--~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
...+.+|||+||.+.++++||+.+|+.||.|.+|.|++. +| ||||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345678999999999999999999999999999999944 55 99999999987 78999999999999999999999
Q ss_pred ecchh
Q 006316 396 LAQRK 400 (650)
Q Consensus 396 ~a~~~ 400 (650)
.|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99864
No 95
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.29 E-value=2.1e-10 Score=123.29 Aligned_cols=109 Identities=24% Similarity=0.332 Sum_probs=87.6
Q ss_pred cccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchh
Q 006316 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 217 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 296 (650)
.+++|||+.|+..+++.||..+|+.||.|.+|.++. +++||||++....+|.+|+.+|+...+.++.+.+.|+-.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 347899999999999999999999999999999986 489999999999999999999999999999999999977
Q ss_pred hhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHh
Q 006316 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343 (650)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~ 343 (650)
+--+. +.+ .+....|=|.-||++--.++|+.++.
T Consensus 495 ~G~ks-e~k------------~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 495 KGPKS-EYK------------DYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred CCcch-hhh------------hhhhcccCeeEeehHhcCHHHHHhhh
Confidence 54333 221 22334556667777665555555553
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.28 E-value=2.3e-11 Score=96.27 Aligned_cols=72 Identities=43% Similarity=0.752 Sum_probs=67.9
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
+|||+|||..+++++|+++|+.||.|..+++..+. +.++|+|||+|.+.++|.+|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999887 7889999999999999999999999999999998873
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.27 E-value=2.2e-11 Score=124.24 Aligned_cols=164 Identities=29% Similarity=0.451 Sum_probs=123.2
Q ss_pred ccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchh
Q 006316 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 218 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 296 (650)
..+|||+||+..+++++|.++|..||.|..+.+..+ ..++++|||||+|.+.+++..|+..+++..+.|+.+.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999999999998 5899999999999999999999999999999999999999652
Q ss_pred ----hhHHHH--HHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCC-CcceEEEEc
Q 006316 297 ----KYEREM--ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFVAF 369 (650)
Q Consensus 297 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~-s~g~~fV~f 369 (650)
+..... .....................+++.+++..++..++...|..+|.+..+.+.....+. ...+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 111110 0000000011122334566789999999999999999999999999777776655332 333444455
Q ss_pred CCHHHHHHHHHH
Q 006316 370 STAEEASKALTE 381 (650)
Q Consensus 370 ~~~~~A~~A~~~ 381 (650)
.....+......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 444444444443
No 98
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=6.7e-12 Score=106.33 Aligned_cols=86 Identities=22% Similarity=0.384 Sum_probs=80.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
.++-+.=.|||.+++...||++|.+.|..||+|..|.+-.|.+|+-.+|||+|+|++.++|+.|++.+|+..|.|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 006316 114 MYSYRD 119 (650)
Q Consensus 114 ~~s~~~ 119 (650)
-|+...
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 998654
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=1.2e-11 Score=97.90 Aligned_cols=71 Identities=34% Similarity=0.735 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
+|||+|||.++++++|.++|+.||+|..+++.++. +.+.|+|||+|.+.++|++|++.+++..|.|++|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999886 678899999999999999999999999999988876
No 100
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=1.2e-11 Score=117.76 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
...+|||+||++.+||++|+++|+.||+|.+|++.+|. ++.|+|||.|.++++|+.|+ .||+..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 35799999999999999999999999999999999984 44579999999999999999 799999999999997543
No 101
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=9.2e-14 Score=150.46 Aligned_cols=323 Identities=15% Similarity=0.157 Sum_probs=234.3
Q ss_pred CCEEEEcCCCCCCCHHHHH-HHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLY-DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~-~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
.+.++|-|-+..-+...|. .+|+-++-+.. ..+....+..+..||+...+.+++..++..+.......-.+-+.-+.
T Consensus 479 d~~R~iWn~imty~~~~iag~Wle~~~lE~~--~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 479 DKAREIWNFIMTYGGGSIAGKWLEAINLERE--YGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred hhhhHhhhccccCCcchHHHHHHHHHhHHHH--hCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 3567777888877887777 66665432111 01111223345589999999999999998877655544444332111
Q ss_pred cCccc-----ccCCCceeEecCCCcccchH-HHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCC
Q 006316 118 RDPTI-----RKSGAGNIFIKNLDKSIDNK-ALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190 (650)
Q Consensus 118 ~~~~~-----~~~~~~~l~V~nLp~~i~~~-~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng 190 (650)
..... .........+.++.+....+ ..+..|..+|.|..++.... ..-....++++.++...+++.|.. -.+
T Consensus 557 ~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~ 635 (881)
T KOG0128|consen 557 PEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAG 635 (881)
T ss_pred HHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccc
Confidence 11000 11122346677777766555 67888999999999888763 222233378899999999998885 467
Q ss_pred ceecCeeeEEccccccccccccccc----ccccceeccCCCCCCCHHHHHHHhcccCceeEEEEE-eCCCCCcceeEEEE
Q 006316 191 MLLNDKQVFVGPFLRKQERESTADK----TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM-RDADGKSKCFGFVN 265 (650)
Q Consensus 191 ~~i~g~~l~v~~~~~~~~~~~~~~~----~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~-~~~~g~srg~afV~ 265 (650)
..+.++...+.....+......... ....++|++||+....+++|...|..+|.+..+.+. ....++-||+|++.
T Consensus 636 ~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~ 715 (881)
T KOG0128|consen 636 GALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVE 715 (881)
T ss_pred cccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeE
Confidence 7778888888776655433222111 233579999999999999999999999988877665 44567889999999
Q ss_pred eCChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhc
Q 006316 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345 (650)
Q Consensus 266 f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~ 345 (650)
|...+++.+|+....++.+ | ...++|.|.|+..|+++|+.+|+.+
T Consensus 716 F~~~~~~~aaV~f~d~~~~-g----------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~ 760 (881)
T KOG0128|consen 716 FLKPEHAGAAVAFRDSCFF-G----------------------------------KISVAISGPPFQGTKEELKSLASKT 760 (881)
T ss_pred eecCCchhhhhhhhhhhhh-h----------------------------------hhhhheeCCCCCCchHHHHhhcccc
Confidence 9999999999975433322 1 1269999999999999999999999
Q ss_pred CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 346 GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 346 G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
|++++++++..++|+.+|.++|.|.+..+|.+++.......+..+.+.|+..++
T Consensus 761 gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 761 GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999999999999999999999999999988888878777777777665
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=2.6e-11 Score=115.46 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=69.9
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
.+.+|||+||++.+|+++|+++|+.||+|++|+|.++ +.+++||||+|.+.++|..|+ .|+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4679999999999999999999999999999999988 556789999999999999999 699999999999998543
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=8.6e-13 Score=117.62 Aligned_cols=78 Identities=21% Similarity=0.480 Sum_probs=73.8
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
.+.-|||+|||++.||.||..+|++||+|+.|.+++|. +|+|+||||.+|++-.+..-|+..|||..|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34579999999999999999999999999999999998 8999999999999999999999999999999999999763
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2.2e-11 Score=117.13 Aligned_cols=81 Identities=22% Similarity=0.448 Sum_probs=76.4
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
.+-++|||..|+++++|.+|+..|+.||.|+.|+++.+. +|+++|||||+|.+..+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 455799999999999999999999999999999999996 9999999999999999999999999999999999999985
Q ss_pred ch
Q 006316 398 QR 399 (650)
Q Consensus 398 ~~ 399 (650)
.-
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.24 E-value=1.8e-11 Score=96.40 Aligned_cols=70 Identities=36% Similarity=0.740 Sum_probs=66.6
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 44 V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
|+|||..+++++|+++|+.||.|..+++.++..+++++|||||.|.+.++|.+|++.+++..+.|+.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999999888999999999999999999999999999999998876
No 106
>smart00360 RRM RNA recognition motif.
Probab=99.19 E-value=7.9e-11 Score=92.75 Aligned_cols=70 Identities=44% Similarity=0.764 Sum_probs=65.5
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 326 V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
|+||+..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.+++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999877 58899999999999999999999999999999998873
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.18 E-value=1.8e-10 Score=91.55 Aligned_cols=74 Identities=41% Similarity=0.741 Sum_probs=69.9
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+.++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999888778899999999999999999999999999999999864
No 108
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.18 E-value=6.2e-11 Score=94.26 Aligned_cols=74 Identities=38% Similarity=0.764 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
+|+|+|||.++++++|+++|+.+|.|..+.+.++..+ ++.|+|||+|.+.++|..|++.+++..++|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988655 7789999999999999999999999999999998764
No 109
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.2e-11 Score=113.43 Aligned_cols=84 Identities=31% Similarity=0.505 Sum_probs=78.3
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..++|||++|.++++|.-|...|-+||.|++|.+..|. +++.||||||+|.-.|+|..||..||+.++.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34689999999999999999999999999999999886 78899999999999999999999999999999999999998
Q ss_pred hhHHH
Q 006316 399 RKEER 403 (650)
Q Consensus 399 ~~~~r 403 (650)
+..-+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 76543
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.16 E-value=4.4e-11 Score=125.73 Aligned_cols=81 Identities=28% Similarity=0.587 Sum_probs=78.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccccC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~ 119 (650)
+++||||+|++++|++|.++|+..|+|.+++++.|..||+++||||++|.+.++|++|++.||+..+.|++|+|.|...+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred c
Q 006316 120 P 120 (650)
Q Consensus 120 ~ 120 (650)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.14 E-value=2e-10 Score=86.60 Aligned_cols=56 Identities=39% Similarity=0.738 Sum_probs=51.5
Q ss_pred HHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 338 l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
|+++|++||+|+++.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998774 579999999999999999999999999999999985
No 112
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.8e-11 Score=111.00 Aligned_cols=83 Identities=27% Similarity=0.509 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
...++||||+|..+|||..|...|=.||.|++|.+..|..+.+++||+||+|.-.|||..|++.||...+.||.|||.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccC
Q 006316 117 YRD 119 (650)
Q Consensus 117 ~~~ 119 (650)
...
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 654
No 113
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=9.6e-11 Score=99.40 Aligned_cols=82 Identities=21% Similarity=0.463 Sum_probs=77.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
...+..|||.++....||++|.+.|..||+|+.+.+-.|. +|..+||++|+|.+.++|..|+..+||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 4567789999999999999999999999999999998886 899999999999999999999999999999999999999
Q ss_pred cch
Q 006316 397 AQR 399 (650)
Q Consensus 397 a~~ 399 (650)
+--
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 753
No 114
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.12 E-value=1.2e-10 Score=122.38 Aligned_cols=83 Identities=27% Similarity=0.483 Sum_probs=78.1
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchh
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
+.+||+|+++++++++|.++|+..|.|.++++..|+ +|+++||||++|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999887 8999999999999999999999999999999999999998765
Q ss_pred HHHH
Q 006316 401 EERR 404 (650)
Q Consensus 401 ~~r~ 404 (650)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5433
No 115
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=2.7e-10 Score=118.87 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=109.7
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCC
Q 006316 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (650)
Q Consensus 30 ~~~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~ 109 (650)
.......-+.++|+|-|||..|++++|+++|+.||.|..|+. |....|.+||+|-|..+|++|++.|++..|.|+
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 333444556799999999999999999999999999999655 445568999999999999999999999999999
Q ss_pred cccccccccCccc--------------------ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCccc
Q 006316 110 PIRIMYSYRDPTI--------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRG 169 (650)
Q Consensus 110 ~i~v~~s~~~~~~--------------------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg 169 (650)
.|+.....+.... .......+|+- |++..+.--+...++.+|.+.. . .++.-+.
T Consensus 141 ~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~----~~~~~~h 214 (549)
T KOG4660|consen 141 RIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-R----ETPLLNH 214 (549)
T ss_pred hhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-c----cccchhh
Confidence 9883222111000 00011224433 8888777666777777777654 1 1222233
Q ss_pred EEEEEECCHHHHHHHHHhhCCceecCeeeEE
Q 006316 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200 (650)
Q Consensus 170 ~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 200 (650)
.-|+.|.+..++..+.... |+.+.+....+
T Consensus 215 q~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~ 244 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEPRG-GFLISNSSGVI 244 (549)
T ss_pred hhhhhhccccchhhcccCC-ceecCCCCceE
Confidence 5677888877776655533 66666666433
No 116
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.11 E-value=9e-09 Score=109.31 Aligned_cols=166 Identities=14% Similarity=0.023 Sum_probs=117.1
Q ss_pred eEecCCCcccchHHHHhhhcccCceeEEEEeeCC-CCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccccc-
Q 006316 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ- 207 (650)
Q Consensus 130 l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~- 207 (650)
+-+++.+.+.++.+++++|... .|.+..+..+. .+...|-++|.|....++.+|++. |.+..-++.+.+.+.....
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 4567778888889999998654 45555555553 333478899999999999999964 5555555555553321110
Q ss_pred ----------------------------ccccc----cccccccceeccCCCCCCCHHHHHHHhcccCceeE-EEEEeCC
Q 006316 208 ----------------------------EREST----ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDA 254 (650)
Q Consensus 208 ----------------------------~~~~~----~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~-~~v~~~~ 254 (650)
++... ....-..+|||..||..+++.++.+.|...-.|++ |.+.+..
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 00000 00122357999999999999999999988777777 7777778
Q ss_pred CCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhh
Q 006316 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297 (650)
Q Consensus 255 ~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 297 (650)
+++.++.|||.|..++++..|...-+...+..+.|.|....++
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 8999999999999988888887655656666777777665443
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7.8e-11 Score=115.40 Aligned_cols=87 Identities=22% Similarity=0.379 Sum_probs=81.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
.+.-..|...|||..|.+-+|.++|.-+||.||+|.+|.|+||..|+-|+.||||+|++.++.++|.-+|++..|..+.|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 33445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 006316 112 RIMYSYR 118 (650)
Q Consensus 112 ~v~~s~~ 118 (650)
+|-||+.
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 9998864
No 118
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=3.3e-10 Score=89.62 Aligned_cols=60 Identities=23% Similarity=0.532 Sum_probs=53.7
Q ss_pred HHHHHHHHh----hcCCeEEEE-EeeCC-C--CCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEE
Q 006316 335 DDKLKELFS----EFGTITSCK-VMRDP-N--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (650)
Q Consensus 335 ~~~l~~~F~----~~G~i~~~~-i~~~~-~--g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V 394 (650)
+++|+++|+ +||.|.++. +..++ + +.++|||||+|.+.++|.+|++.|||+.++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999995 55544 4 889999999999999999999999999999999976
No 119
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=3.1e-11 Score=110.91 Aligned_cols=148 Identities=25% Similarity=0.354 Sum_probs=125.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
...++|||+|+-..|+|+.|.|+|-+.|+|..|.|..++. ++-+ ||||+|.++-...-|++-+|+..+.++++.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4568999999999999999999999999999999887754 3444 9999999999999999999999999999988643
Q ss_pred ccCcccccCCCceeEecC----CCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCce
Q 006316 117 YRDPTIRKSGAGNIFIKN----LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (650)
Q Consensus 117 ~~~~~~~~~~~~~l~V~n----Lp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (650)
-++ |...++++.++..|+..|.+..+++.++.+|+++.++|+.+-...+.-.++....+..
T Consensus 85 ---------------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 85 ---------------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred ---------------cCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 233 6677899999999999999999999999889999999999887777777777777766
Q ss_pred ecCeeeEEc
Q 006316 193 LNDKQVFVG 201 (650)
Q Consensus 193 i~g~~l~v~ 201 (650)
+.-+++.++
T Consensus 150 ~~~~~~~~g 158 (267)
T KOG4454|consen 150 LFQKKVTIG 158 (267)
T ss_pred cCCCCcccc
Confidence 655555553
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.4e-09 Score=112.61 Aligned_cols=151 Identities=21% Similarity=0.343 Sum_probs=114.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCC--Ccccc---EEEEEecchhHHHHHcccccC--------
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST--RRSLG---YGYVNYNAAHEATRALDELNF-------- 103 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t--~~s~G---~a~V~F~~~~~A~~Al~~ln~-------- 103 (650)
.-+++||||+||++++|+.|...|..||.+.-=+-.+.... -..+| |+|+.|+++.....-+..+..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 34799999999999999999999999998754444222211 12445 999999999998777765531
Q ss_pred ---ccCCCCccccc-cccc------CcccccCCCceeEecCCCcccchHHHHhhhc-ccCceeEEEEeeC-CCCCcccEE
Q 006316 104 ---TPLNGKPIRIM-YSYR------DPTIRKSGAGNIFIKNLDKSIDNKALHDTFS-TFGNILSCKVATD-SLGQSRGYG 171 (650)
Q Consensus 104 ---~~i~g~~i~v~-~s~~------~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs-~~G~I~~~~v~~d-~~g~skg~a 171 (650)
..++.+.|.|. |-.. +....-...++|||++||.-++.++|..+|+ -||.|.-+-|-+| +-+-.+|-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 12344445444 2111 1233334567999999999999999999997 9999998888888 667789999
Q ss_pred EEEECCHHHHHHHHHh
Q 006316 172 FVQFDNEESAKSAIDK 187 (650)
Q Consensus 172 fV~F~~~e~A~~Ai~~ 187 (650)
-|+|.+..+-.+||..
T Consensus 417 RVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAISA 432 (520)
T ss_pred eeeecccHHHHHHHhh
Confidence 9999999999999974
No 121
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=2e-10 Score=86.54 Aligned_cols=56 Identities=29% Similarity=0.778 Sum_probs=51.1
Q ss_pred HHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 56 L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
|+++|++||.|.+|.+.++. .++|||+|.+.++|++|++.||+..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998764 469999999999999999999999999999999885
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=4.8e-11 Score=129.76 Aligned_cols=232 Identities=17% Similarity=0.139 Sum_probs=183.2
Q ss_pred CCCCEEEEcCCCCCCCHH-HHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 37 FVSTSLYVGDLDLSVNDS-QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~-~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
...+.+++.++-+..... .+...|..+|.|..|++........+.-+.++.++...+++.|.. ..+..+.++...+..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCC
Confidence 445778888888877766 567889999999999887632222233388999999999999994 477778888888877
Q ss_pred cccCcccccC--------CCceeEecCCCcccchHHHHhhhcccCceeEEEEe-eCCCCCcccEEEEEECCHHHHHHHHH
Q 006316 116 SYRDPTIRKS--------GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA-TDSLGQSRGYGFVQFDNEESAKSAID 186 (650)
Q Consensus 116 s~~~~~~~~~--------~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~-~d~~g~skg~afV~F~~~e~A~~Ai~ 186 (650)
+...+..... ...++||+||+..+.+.+|...|+.+|.+..+.+. ....+.-+|+|||.|...+++.+|+.
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 6554422111 23469999999999999999999999988777665 33567789999999999999999997
Q ss_pred hhCCceecCeeeEEcccccccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEe
Q 006316 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266 (650)
Q Consensus 187 ~lng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f 266 (650)
...++.+. ...++|.|.|..-|.++++.+|+++|.+++..+....+|+.+|.++|.|
T Consensus 728 f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y 784 (881)
T KOG0128|consen 728 FRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDY 784 (881)
T ss_pred hhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccC
Confidence 54443322 2458899999999999999999999999999998889999999999999
Q ss_pred CChhhHHHHHHHHcCCccCCeeEEEe
Q 006316 267 DDPDDAARSVEALNGKKFDDKEWYVG 292 (650)
Q Consensus 267 ~~~~~A~~Ai~~l~g~~~~g~~l~v~ 292 (650)
.+..++.+++.+.....+..+.+.+.
T Consensus 785 ~~ea~~s~~~~s~d~~~~rE~~~~v~ 810 (881)
T KOG0128|consen 785 NTEADASRKVASVDVAGKRENNGEVQ 810 (881)
T ss_pred CCcchhhhhcccchhhhhhhcCcccc
Confidence 99999988887766555544444443
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=99.02 E-value=4.4e-10 Score=88.86 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=55.5
Q ss_pred HHHHHHHHh----cCCCEEEEE-EEeeCCC--CccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 53 DSQLYDLFN----QMGQVVSVR-VCRDLST--RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 53 e~~L~~~Fs----~~G~V~~i~-v~~d~~t--~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
+++|+++|+ .||.|.+|. |..++.+ +.++|||||.|.+.++|.+|++.||+..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678889998 999999996 7777666 899999999999999999999999999999999875
No 124
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.01 E-value=1.1e-08 Score=100.39 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=66.3
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcC--CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
.++||+||-|++|++||.+.+..-| .+.+++++.++ +|+|+|||+|...+.....+.++.|-.+.|.|..-.|.-.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4799999999999999999998877 57788888776 8999999999999999999999999999998876555443
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.93 E-value=3.3e-09 Score=105.27 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=120.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCC----CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMG----QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G----~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
--.|.+++||.++|+.++.++|..-. -+..|..++. -.++..|-|||.|..+++|+.||.+ |...|.-|.|.+-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 35788999999999999999996432 3345666554 4578889999999999999999976 5555666666554
Q ss_pred ccccC------------c--------c---------cccCCCceeEecCCCcccchHHHHhhhcccCc-ee--EEEEeeC
Q 006316 115 YSYRD------------P--------T---------IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN-IL--SCKVATD 162 (650)
Q Consensus 115 ~s~~~------------~--------~---------~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~-I~--~~~v~~d 162 (650)
.|... + . .+.....+|.+++||.+.+.++|.++|..|-. |. -+.+..+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 33210 0 0 01112467999999999999999999998863 22 2567777
Q ss_pred CCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEE
Q 006316 163 SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200 (650)
Q Consensus 163 ~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 200 (650)
..|+..|-|||+|.+.|+|..|..+.+.+....+.|.|
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 88999999999999999999999887766655555555
No 126
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.88 E-value=3.6e-09 Score=99.86 Aligned_cols=166 Identities=20% Similarity=0.337 Sum_probs=133.0
Q ss_pred CEEEEcCCCCCCCHHH-H--HHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc--
Q 006316 40 TSLYVGDLDLSVNDSQ-L--YDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM-- 114 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~-L--~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~-- 114 (650)
-.++++++-..+..+- | ...|+.+-....-.++++ .-+.-++.+|+.|.....-.++-..-+...+.-.+||+.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4566777666655544 4 778888776667777777 556778899999998888888876666777777778875
Q ss_pred --ccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCc
Q 006316 115 --YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGM 191 (650)
Q Consensus 115 --~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~ 191 (650)
|.+....-......+||-+.|..+++++.|...|.+|-+....++++| .+|+++||+||.|.+..++..|+..+||.
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk 255 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK 255 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc
Confidence 333333334556778999999999999999999999999999999999 78999999999999999999999999999
Q ss_pred eecCeeeEEcccccc
Q 006316 192 LLNDKQVFVGPFLRK 206 (650)
Q Consensus 192 ~i~g~~l~v~~~~~~ 206 (650)
.++.+.|.+.....+
T Consensus 256 yVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 256 YVGSRPIKLRKSEWK 270 (290)
T ss_pred ccccchhHhhhhhHH
Confidence 999998888655433
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.86 E-value=2.9e-09 Score=97.80 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~-G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
.....-+||..+|..+.|.++..+|.++ |.|+.+++.|.++||+|+|||||+|++.+.|.-|-++||+-.+.++-+.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3446789999999999999999999998 799999999999999999999999999999999999999999999988776
Q ss_pred ccc
Q 006316 115 YSY 117 (650)
Q Consensus 115 ~s~ 117 (650)
+-.
T Consensus 126 vmp 128 (214)
T KOG4208|consen 126 VMP 128 (214)
T ss_pred EeC
Confidence 544
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.6e-09 Score=102.59 Aligned_cols=86 Identities=29% Similarity=0.470 Sum_probs=80.3
Q ss_pred hccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
..++...|||.-|..-+|++||.-+|+.||+|.+|.|++|. +|-|-.||||+|.+.+++++|.-+|++..|+.+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34566789999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred ecchhHH
Q 006316 396 LAQRKEE 402 (650)
Q Consensus 396 ~a~~~~~ 402 (650)
|++....
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9987664
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.82 E-value=7.2e-09 Score=97.84 Aligned_cols=168 Identities=22% Similarity=0.330 Sum_probs=131.3
Q ss_pred eEecCCCcccchHH---HHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcccccc
Q 006316 130 IFIKNLDKSIDNKA---LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 130 l~V~nLp~~i~~~~---L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 206 (650)
.++.++-..+..+- +...|+.+-.+...++..+..+.-.+++|+.|.....-.++-..-+++.+.-..|+.......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44444444443333 266777777777788888877888999999998877777766666677776666777666555
Q ss_pred cccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccC
Q 006316 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285 (650)
Q Consensus 207 ~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~ 285 (650)
.+.....-..+..+||.+.|..+++++-|...|.+|-.-...++++| .+|+++||+||.|.+..++..|+..++|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 55544444556678999999999999999999999998888888888 68999999999999999999999999999999
Q ss_pred CeeEEEecchhh
Q 006316 286 DKEWYVGKAQKK 297 (650)
Q Consensus 286 g~~l~v~~a~~~ 297 (650)
.+.+.......+
T Consensus 259 srpiklRkS~wk 270 (290)
T KOG0226|consen 259 SRPIKLRKSEWK 270 (290)
T ss_pred cchhHhhhhhHH
Confidence 988777555443
No 130
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=2e-09 Score=99.24 Aligned_cols=130 Identities=25% Similarity=0.403 Sum_probs=112.1
Q ss_pred ccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhh
Q 006316 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297 (650)
Q Consensus 218 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 297 (650)
..+|||.|+...+++|-|.++|-.-|.|..+.|..+.+++.+ |+||.|+++.+..-|++.+||..+.+..+.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~------ 81 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR------ 81 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc------
Confidence 368999999999999999999999999999999998888888 9999999999999999999999887776555
Q ss_pred hHHHHHHhhhhhhhhhhhhhccCCceeEEec----CCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHH
Q 006316 298 YEREMELKGKFEQSLKETADKFEGLNLYVKN----LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373 (650)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----l~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~ 373 (650)
+++.+| |+..++++.+.+.|+.-|.++.+++.++.+|+.+.++||.+--..
T Consensus 82 -------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 82 -------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLC 136 (267)
T ss_pred -------------------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhh
Confidence 345555 778889999999999999999999999999999999998876544
Q ss_pred HHHHHH
Q 006316 374 EASKAL 379 (650)
Q Consensus 374 ~A~~A~ 379 (650)
..-.++
T Consensus 137 ~~P~~~ 142 (267)
T KOG4454|consen 137 AVPFAL 142 (267)
T ss_pred cCcHHh
Confidence 433333
No 131
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=2e-08 Score=92.47 Aligned_cols=80 Identities=25% Similarity=0.426 Sum_probs=73.2
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhc-CCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEF-GTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...+||..++.-+.+.+|..+|.+| |.|+.+++-++. +|.|+|||||+|.+.+.|.-|.+.||++.+.++.|.+.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3469999999999999999999998 778888885655 99999999999999999999999999999999999999987
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 76
No 132
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=2.6e-08 Score=98.29 Aligned_cols=77 Identities=23% Similarity=0.435 Sum_probs=68.5
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCC-ceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG-KMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~-~~~~g~~l~V~~ 396 (650)
+....+|||++|.+.++|.+|+++|.+||+|++++++.. +++|||+|.+.+.|+.|..+.-+ ..|+|.+|.|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 344568999999999999999999999999999999876 45999999999999999887644 466999999999
Q ss_pred cch
Q 006316 397 AQR 399 (650)
Q Consensus 397 a~~ 399 (650)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 887
No 133
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=2.4e-08 Score=98.54 Aligned_cols=77 Identities=25% Similarity=0.457 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHccc-ccCccCCCCccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE-LNFTPLNGKPIRIM 114 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~-ln~~~i~g~~i~v~ 114 (650)
....++|||++|-..++|.+|+++|.+||.|.+|++.... |+|||+|.+.+.|+.|.++ +|...|+|++|+|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 3457999999999999999999999999999999998764 4999999999999999966 46677999999999
Q ss_pred cccc
Q 006316 115 YSYR 118 (650)
Q Consensus 115 ~s~~ 118 (650)
|...
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9876
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.67 E-value=3.8e-08 Score=102.18 Aligned_cols=81 Identities=30% Similarity=0.469 Sum_probs=73.6
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
...++||||.+|...+-..||+.+|++||+|+.++|+.+. .--.++|+||++++.++|.++|+.||...+.|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3456799999999999999999999999999999999875 344688999999999999999999999999999999988
Q ss_pred cc
Q 006316 397 AQ 398 (650)
Q Consensus 397 a~ 398 (650)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 75
No 135
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.2e-07 Score=96.63 Aligned_cols=151 Identities=21% Similarity=0.377 Sum_probs=106.3
Q ss_pred CceeEecCCCcccchHHHHhhhcccCceeEEEEe--eCC--CCCccc---EEEEEECCHHHHHHHHHhhCC----ce---
Q 006316 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA--TDS--LGQSRG---YGFVQFDNEESAKSAIDKLNG----ML--- 192 (650)
Q Consensus 127 ~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~--~d~--~g~skg---~afV~F~~~e~A~~Ai~~lng----~~--- 192 (650)
++.|||++||.+++++.|...|..||.+.- ... ... .-..+| |+|+-|+++.+...-+..... ..
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 457999999999999999999999998642 222 111 112456 999999999988887765432 00
Q ss_pred ----ecCeeeEEcccccc-cc--cccccccccccceeccCCCCCCCHHHHHHHhc-ccCceeEEEEEeC-CCCCcceeEE
Q 006316 193 ----LNDKQVFVGPFLRK-QE--RESTADKTRFNNVYVKNLSETTTEDDLKKIFG-EFGIITSTAVMRD-ADGKSKCFGF 263 (650)
Q Consensus 193 ----i~g~~l~v~~~~~~-~~--~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~-~~G~i~~~~v~~~-~~g~srg~af 263 (650)
+..+.+.|.+..-. .. ......-+..++|||++||..++.++|..+|+ .||.|..+-|-.| +-.-.+|-|-
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 11222222211110 00 00111123347899999999999999999998 7999999999888 4456899999
Q ss_pred EEeCChhhHHHHHHH
Q 006316 264 VNFDDPDDAARSVEA 278 (650)
Q Consensus 264 V~f~~~~~A~~Ai~~ 278 (650)
|+|.+..+-.+||.+
T Consensus 418 VtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISA 432 (520)
T ss_pred eeecccHHHHHHHhh
Confidence 999999999998863
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.61 E-value=1.1e-07 Score=92.22 Aligned_cols=81 Identities=30% Similarity=0.493 Sum_probs=76.0
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchh
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
.+.|+|.||+..|+++||+++|..||.++.+-+..+++|.+.|.|-|.|...++|..|++.+||..++|+.|.+.+..+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred H
Q 006316 401 E 401 (650)
Q Consensus 401 ~ 401 (650)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.61 E-value=1.2e-07 Score=98.58 Aligned_cols=85 Identities=26% Similarity=0.496 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
+.-++.|||++|..-+...+|+.+|++||+|+..+|+....+---++|+||.+.+.++|.+||+.|+.+.|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34578999999999999999999999999999999999988877889999999999999999999999999999999987
Q ss_pred cccCc
Q 006316 116 SYRDP 120 (650)
Q Consensus 116 s~~~~ 120 (650)
....+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 66443
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=3.1e-08 Score=108.65 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=132.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
...+++|++|||+..+++.+|+..|..+|.|.+|.+-+... +.-.-||||.|.+...+-+|...+.+..|....+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34579999999999999999999999999999999877632 33345999999999999999999999888877888876
Q ss_pred cccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecC
Q 006316 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (650)
Q Consensus 116 s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g 195 (650)
... .....+.+|+++|..++....|...|..||.|..|.+-. ...|+||.|++...++.|++.+.|..|.+
T Consensus 448 G~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 448 GQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred ccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCC
Confidence 643 233457899999999999999999999999998876643 45699999999999999999999998865
Q ss_pred --eeeEEccc
Q 006316 196 --KQVFVGPF 203 (650)
Q Consensus 196 --~~l~v~~~ 203 (650)
+.+.|...
T Consensus 519 P~~r~rvdla 528 (975)
T KOG0112|consen 519 PPRRLRVDLA 528 (975)
T ss_pred CCcccccccc
Confidence 45555433
No 139
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.57 E-value=4.3e-08 Score=98.86 Aligned_cols=168 Identities=22% Similarity=0.321 Sum_probs=134.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
..+++|++++-.++.+.++..+|..+|.+.............++|+++|.|...+.+..|+.......+.++.+..-...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999988888888777788999999999999999999995533234555554443332
Q ss_pred cCc--------ccccCCCceeE-ecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHh
Q 006316 118 RDP--------TIRKSGAGNIF-IKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187 (650)
Q Consensus 118 ~~~--------~~~~~~~~~l~-V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~ 187 (650)
... ........+++ |++++.+++.++|+..|..+|.|..+++..+ ..+..+++|||.|.+...+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 221 11112234455 9999999999999999999999999999888 6788999999999999999999987
Q ss_pred hCCceecCeeeEEcccccc
Q 006316 188 LNGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 188 lng~~i~g~~l~v~~~~~~ 206 (650)
++..+.++.+.+.....+
T Consensus 247 -~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred -ccCcccCcccccccCCCC
Confidence 788888888888665443
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.53 E-value=2.4e-07 Score=97.20 Aligned_cols=81 Identities=14% Similarity=0.300 Sum_probs=69.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
.......+|||+|||.++++.+|+++|..||+|+..+|......+++.+||||+|.+.++++.|+.. +-..|+++++.|
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~V 361 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNV 361 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEE
Confidence 3344556799999999999999999999999999999988764455558999999999999999976 677899999999
Q ss_pred cc
Q 006316 114 MY 115 (650)
Q Consensus 114 ~~ 115 (650)
.-
T Consensus 362 ee 363 (419)
T KOG0116|consen 362 EE 363 (419)
T ss_pred Ee
Confidence 74
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.53 E-value=1.8e-07 Score=99.97 Aligned_cols=80 Identities=29% Similarity=0.461 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeC---CCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL---STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~---~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
..+.|||+||++.++|+.|...|-.||+|.+|+|.-.. ..++-.-|+||.|.+..||++|++.|++..+.+.++++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 46899999999999999999999999999999987442 223344589999999999999999999999999999999
Q ss_pred ccc
Q 006316 115 YSY 117 (650)
Q Consensus 115 ~s~ 117 (650)
|..
T Consensus 253 Wgk 255 (877)
T KOG0151|consen 253 WGK 255 (877)
T ss_pred ccc
Confidence 985
No 142
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=8.9e-08 Score=105.19 Aligned_cols=160 Identities=18% Similarity=0.251 Sum_probs=133.5
Q ss_pred ccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 216 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
....+||++||...+++.+|+..|..+|.|..+.+....-+.-.-|+||.|.+...+-.|...+.+..|....+.+...+
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 34578999999999999999999999999999998877555556699999999999999988888887765554444332
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHH
Q 006316 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375 (650)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A 375 (650)
. .....+.++|++|..++....|..+|..||.|..|.+-.. .+ |++|.|.+...|
T Consensus 450 ~--------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~--yayi~yes~~~a 504 (975)
T KOG0112|consen 450 P--------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QP--YAYIQYESPPAA 504 (975)
T ss_pred c--------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---Cc--ceeeecccCccc
Confidence 2 1234567999999999999999999999999999876543 33 999999999999
Q ss_pred HHHHHHhCCceecC--eeEEEEecchh
Q 006316 376 SKALTEMNGKMVVS--KPLYVALAQRK 400 (650)
Q Consensus 376 ~~A~~~l~~~~~~g--~~l~V~~a~~~ 400 (650)
..|++.|.|..|++ +.+.|.|+...
T Consensus 505 q~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 505 QAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred hhhHHHHhcCcCCCCCcccccccccCC
Confidence 99999999999975 66899988754
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.49 E-value=9.4e-08 Score=96.40 Aligned_cols=176 Identities=22% Similarity=0.238 Sum_probs=131.9
Q ss_pred cccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 217 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
....+|++++...+.+.+...++..+|.+....+... ....+++++.+.|...+.+..++.........+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 3577999999999888888889999998777766654 557889999999999999999887544334444433332222
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhccCCceeE-EecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHH
Q 006316 296 KKYEREMELKGKFEQSLKETADKFEGLNLY-VKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAE 373 (650)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~ 373 (650)
.... . ..............++| |+|++..+++++|+.+|..+|.|..+++..++ .+.++||++|+|.+..
T Consensus 167 ~~~~-----~---~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGL-----R---PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred cccc-----c---ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 2110 0 00001111122233444 99999999999999999999999999998876 7899999999999999
Q ss_pred HHHHHHHHhCCceecCeeEEEEecchhH
Q 006316 374 EASKALTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 374 ~A~~A~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
.+..++.. ....+.++++.+....+..
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCCc
Confidence 99999987 8899999999998877654
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.47 E-value=2.4e-07 Score=89.89 Aligned_cols=78 Identities=35% Similarity=0.523 Sum_probs=71.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
...|+|.|||..|++++|.++|..||.+..+-|--| ..++|+|.|-|.|...+||.+|++++|+..++|++++|....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 378999999999999999999999998888877777 679999999999999999999999999999999998887544
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.36 E-value=1.3e-06 Score=72.50 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=65.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCC----CCcccc
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN----GKPIRI 113 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~--G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~----g~~i~v 113 (650)
++|.|+|+|...|.++|.+++... |..--+-+.-|-.++.++|||||+|.+.++|.+..+.+++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988653 66666777778889999999999999999999999999988775 345555
Q ss_pred cccc
Q 006316 114 MYSY 117 (650)
Q Consensus 114 ~~s~ 117 (650)
.|+.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5543
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=1.6e-06 Score=91.09 Aligned_cols=79 Identities=27% Similarity=0.434 Sum_probs=67.9
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
....|||+|||.+++.++|+++|..||.|+...|.... .++..+||||+|.+.+++..|+..- -..+++++|.|...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 34459999999999999999999999999999887654 5566699999999999999999764 667899999998655
Q ss_pred h
Q 006316 399 R 399 (650)
Q Consensus 399 ~ 399 (650)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 4
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.24 E-value=1.1e-06 Score=85.81 Aligned_cols=81 Identities=21% Similarity=0.358 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
....+++||+|+...+|.+++..+|+.||.|..|.+..|+.++.++|||||+|.+.+.++.++. ||+..|.|+.+.+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456899999999999999999999999999999999999998999999999999999999996 999999999999876
Q ss_pred cc
Q 006316 116 SY 117 (650)
Q Consensus 116 s~ 117 (650)
-.
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 43
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.23 E-value=1.9e-06 Score=92.45 Aligned_cols=83 Identities=31% Similarity=0.511 Sum_probs=75.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC----CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP----NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~----~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 393 (650)
.+..+||||+||+..++++.|...|..||.|.+++|+..+ ..+.+.||||.|-+..+|++|+..|+|.++.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999998665 245677999999999999999999999999999999
Q ss_pred EEecchh
Q 006316 394 VALAQRK 400 (650)
Q Consensus 394 V~~a~~~ 400 (650)
+.|++..
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998654
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.23 E-value=2.3e-06 Score=67.32 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=48.4
Q ss_pred CEEEEcCCCCCCCHHHH----HHHHhcCC-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 40 TSLYVGDLDLSVNDSQL----YDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L----~~~Fs~~G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
+-|||.|||.+.+-..| .+++..|| .|.+|. + |.|+|.|.+.+.|++|.++|++..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 47999999999997665 56666675 888872 1 369999999999999999999999999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
+.....+
T Consensus 73 ~~~~~r~ 79 (90)
T PF11608_consen 73 FSPKNRE 79 (90)
T ss_dssp SS--S--
T ss_pred EcCCccc
Confidence 8854433
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.21 E-value=9.8e-06 Score=67.33 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=69.1
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhc--CCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceec----CeeEEE
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEF--GTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVV----SKPLYV 394 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~----g~~l~V 394 (650)
++|-|+|||...|.++|.+++... |...-+.+..|- ++.+.|||||-|.+.+.|.+-.+.++|+... .|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 579999999999999999999763 778888888775 6778999999999999999999999999884 677899
Q ss_pred Eecchh
Q 006316 395 ALAQRK 400 (650)
Q Consensus 395 ~~a~~~ 400 (650)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 998654
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.12 E-value=3.3e-07 Score=92.31 Aligned_cols=153 Identities=23% Similarity=0.356 Sum_probs=118.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCc-cCCCCccccccccc
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT-PLNGKPIRIMYSYR 118 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~-~i~g~~i~v~~s~~ 118 (650)
..||++||.+.++.++|..+|.....-.+-.++-. .|||||++.+..-|.+|++++++. .+.|+++.+..+-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 47999999999999999999976521111112211 269999999999999999999876 48999998877654
Q ss_pred CcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeee
Q 006316 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198 (650)
Q Consensus 119 ~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l 198 (650)
... .++.+-|.|+|+..-.+-|..++..||++.+|....... -.-..-|+|.+.+.++.||.+|||..+.+..+
T Consensus 76 kkq----rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~ 149 (584)
T KOG2193|consen 76 KKQ----RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHL 149 (584)
T ss_pred HHH----HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhh
Confidence 322 234589999999999999999999999999998744321 11122368899999999999999999988888
Q ss_pred EEcccc
Q 006316 199 FVGPFL 204 (650)
Q Consensus 199 ~v~~~~ 204 (650)
.+++..
T Consensus 150 k~~YiP 155 (584)
T KOG2193|consen 150 KVGYIP 155 (584)
T ss_pred hcccCc
Confidence 886553
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.11 E-value=1.3e-05 Score=63.15 Aligned_cols=70 Identities=27% Similarity=0.426 Sum_probs=48.6
Q ss_pred ceeEEecCCCCCCHHH----HHHHHhhcC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 322 LNLYVKNLDDSISDDK----LKELFSEFG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~----l~~~F~~~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
+-|||.|||.+.+... |+.++..+| .|.+| +.+.|+|.|.+.+.|.+|.+.|+|..+.|+.|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 3699999999998754 556666775 67777 246899999999999999999999999999999999
Q ss_pred cchh
Q 006316 397 AQRK 400 (650)
Q Consensus 397 a~~~ 400 (650)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8544
No 153
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.08 E-value=0.00029 Score=69.83 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=63.1
Q ss_pred cceeccCCCCCCCHHHHHHHhcccCc--eeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 219 NNVYVKNLSETTTEDDLKKIFGEFGI--ITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 219 ~~l~V~nlp~~~t~e~l~~~F~~~G~--i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
-++||+||-+++|++||.+.....|. +.++++..+ .+|.|+||++|...+..+.++.++.|-.+.+.|..-.|....
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 57999999999999999888766653 455555555 679999999999999999999999999899988876665443
Q ss_pred h
Q 006316 296 K 296 (650)
Q Consensus 296 ~ 296 (650)
+
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 3
No 154
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.08 E-value=5.4e-06 Score=80.93 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=75.4
Q ss_pred hccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
.......+||+|++..+|.+++..+|+.||.|..+.+..+. .|+++||+||.|.+.+.+.+++. |++..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34566789999999999999999999999999999999888 56799999999999999999999 99999999999999
Q ss_pred ecchh
Q 006316 396 LAQRK 400 (650)
Q Consensus 396 ~a~~~ 400 (650)
+..-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 86543
No 155
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=2.6e-06 Score=89.70 Aligned_cols=71 Identities=30% Similarity=0.471 Sum_probs=64.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEE
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 393 (650)
.....|+|-|||..|++++|+.+|+.||+|+.|+--+. .+|.+||+|.|+.+|++|+++|++..+.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34568999999999999999999999999999765544 567999999999999999999999999999887
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.94 E-value=2e-06 Score=86.85 Aligned_cols=157 Identities=24% Similarity=0.425 Sum_probs=121.4
Q ss_pred cceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCc-cCCeeEEEecchhh
Q 006316 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-FDDKEWYVGKAQKK 297 (650)
Q Consensus 219 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~-~~g~~l~v~~a~~~ 297 (650)
+.+|++||...++..++..+|...-.-.+-.++. ..||+||.+.+...|.+|++.++++. +.|+.+.+...-.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4689999999999999999997542111111221 25799999999999999999999864 77888777655443
Q ss_pred hHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHH
Q 006316 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377 (650)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~ 377 (650)
..+ ++.+.|+|++...-++.|..+...||+++.|....... -.-..-|+|.+.+.+..
T Consensus 77 kqr--------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 77 KQR--------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred HHH--------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHH
Confidence 222 23488999999999999999999999999997643321 11133478999999999
Q ss_pred HHHHhCCceecCeeEEEEecchhHH
Q 006316 378 ALTEMNGKMVVSKPLYVALAQRKEE 402 (650)
Q Consensus 378 A~~~l~~~~~~g~~l~V~~a~~~~~ 402 (650)
|+..++|..+....+.|.|-..+..
T Consensus 135 ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 135 AIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHhhcchHhhhhhhhcccCchhhh
Confidence 9999999999999999999866543
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.86 E-value=3.8e-05 Score=65.44 Aligned_cols=75 Identities=28% Similarity=0.465 Sum_probs=47.4
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCC-----ceecCeeEEEE
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG-----KMVVSKPLYVA 395 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~-----~~~~g~~l~V~ 395 (650)
|+.|+|.++...++.++|++.|+.||.|..|.+....+ .|+|.|.+.+.|.+|+..+.- ..+.+..+.+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56899999999999999999999999999998887644 899999999999999987743 35677777777
Q ss_pred ecchh
Q 006316 396 LAQRK 400 (650)
Q Consensus 396 ~a~~~ 400 (650)
+-.-.
T Consensus 76 vLeGe 80 (105)
T PF08777_consen 76 VLEGE 80 (105)
T ss_dssp ---HH
T ss_pred ECCCH
Confidence 65433
No 158
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.67 E-value=8.4e-06 Score=81.82 Aligned_cols=204 Identities=17% Similarity=0.187 Sum_probs=118.3
Q ss_pred CceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCC----CCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcc
Q 006316 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL----GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202 (650)
Q Consensus 127 ~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~----g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 202 (650)
.+-|.|.||.++++.++++.+|...|.|..+.++.... ......|||.|.+...+..|- .|.++.+-++.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 34689999999999999999999999999999887522 224567999999999888777 5666666666666654
Q ss_pred cccccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCC
Q 006316 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282 (650)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~ 282 (650)
+... +-.+.+ +|..++.-+.+--.-..+| |-|.+..-. -+..++..
T Consensus 86 ~~~~-----------------------~~p~r~--af~~l~~~navprll~pdg-------~Lp~~~~lt--~~nh~p~a 131 (479)
T KOG4676|consen 86 YGDE-----------------------VIPDRF--AFVELADQNAVPRLLPPDG-------VLPGDRPLT--KINHSPNA 131 (479)
T ss_pred cCCC-----------------------CCccHH--HHHhcCcccccccccCCCC-------ccCCCCccc--cccCCccc
Confidence 4221 111111 3333332222111111111 111110000 00000000
Q ss_pred ccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCc
Q 006316 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362 (650)
Q Consensus 283 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~ 362 (650)
.+... .+...+.....+. -..+++|.+|...+...++.+.|..+|+|....+-...+ .
T Consensus 132 ilktP---------------~Lp~~~~A~klee----irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~---s 189 (479)
T KOG4676|consen 132 ILKTP---------------ELPPQAAAKKLEE----IRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR---S 189 (479)
T ss_pred eecCC---------------CCChHhhhhhhHH----HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC---C
Confidence 00000 0111111111111 114799999999999999999999999998887765432 2
Q ss_pred ceEEEEcCCHHHHHHHHHHhCCceec
Q 006316 363 GSGFVAFSTAEEASKALTEMNGKMVV 388 (650)
Q Consensus 363 g~~fV~f~~~~~A~~A~~~l~~~~~~ 388 (650)
-+|.|.|........|+. ++|..+.
T Consensus 190 ~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 190 SSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred cchhhhHhhhhhHHHHHH-hcchhhh
Confidence 356688887766666664 4555554
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.60 E-value=8.5e-05 Score=63.30 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=40.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCc
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT 104 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~ 104 (650)
+.|+|.+++.+++.++|++.|+.||.|..|.+.+... .|||.|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999999987644 6999999999999999887644
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.59 E-value=8.3e-05 Score=74.68 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCE--------EEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCC
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV--------VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V--------~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~ 107 (650)
.....+|||..|+..+++.+|+++|.++|.| --|++.+|+.|.+++|-|.|.|.+...|+.|+.-++...+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 4456899999999999999999999999865 35789999999999999999999999999999999999999
Q ss_pred CCcccccccccCc
Q 006316 108 GKPIRIMYSYRDP 120 (650)
Q Consensus 108 g~~i~v~~s~~~~ 120 (650)
|+.|+|.++.+.+
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998766543
No 161
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.49 E-value=2e-05 Score=79.16 Aligned_cols=203 Identities=14% Similarity=0.163 Sum_probs=115.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeC---CCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL---STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~---~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
.|-|.||.+++|.+.++.+|.-+|.|..++++... .-......|||.|.+...+..|. .|.++.|-++.|.|....
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecC
Confidence 89999999999999999999999999999998732 11234458999999999998888 566666666665553221
Q ss_pred cCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCee
Q 006316 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197 (650)
Q Consensus 118 ~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~ 197 (650)
.. -+.... .|..++.-..+--....+| |-|.+.- ..-+.+++...|.
T Consensus 88 ~~------------------~~p~r~---af~~l~~~navprll~pdg-------~Lp~~~~--lt~~nh~p~ailk--- 134 (479)
T KOG4676|consen 88 DE------------------VIPDRF---AFVELADQNAVPRLLPPDG-------VLPGDRP--LTKINHSPNAILK--- 134 (479)
T ss_pred CC------------------CCccHH---HHHhcCcccccccccCCCC-------ccCCCCc--cccccCCccceec---
Confidence 10 011111 3333332111100000011 0000000 0000011111110
Q ss_pred eEEcccccccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHH
Q 006316 198 VFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277 (650)
Q Consensus 198 l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~ 277 (650)
.+......-.... ..-..+++|.+|...|...++-+.|..+|.|....+... ....+|.+.|....+...|+.
T Consensus 135 ---tP~Lp~~~~A~kl-eeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 135 ---TPELPPQAAAKKL-EEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred ---CCCCChHhhhhhh-HHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHHH
Confidence 0111110000001 111267999999999999999999999999877665433 234467789988777777776
Q ss_pred HHcCCccC
Q 006316 278 ALNGKKFD 285 (650)
Q Consensus 278 ~l~g~~~~ 285 (650)
++|..+.
T Consensus 208 -~~gre~k 214 (479)
T KOG4676|consen 208 -SHGRERK 214 (479)
T ss_pred -hcchhhh
Confidence 3455443
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.41 E-value=0.00013 Score=73.27 Aligned_cols=82 Identities=23% Similarity=0.432 Sum_probs=72.3
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEE--------EEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCe
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITS--------CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~ 390 (650)
...+|||.+|++.+++++|.++|.++|.|.. |+|.++. ++..+|-|.|.|.+...|+.|+..++++.+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4457999999999999999999999998754 4444554 788999999999999999999999999999999
Q ss_pred eEEEEecchhH
Q 006316 391 PLYVALAQRKE 401 (650)
Q Consensus 391 ~l~V~~a~~~~ 401 (650)
.|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999987665
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.36 E-value=0.00043 Score=50.94 Aligned_cols=53 Identities=23% Similarity=0.459 Sum_probs=42.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al 98 (650)
++.|-|.+.+++..+. +..+|+.||.|..+.+-... -+.||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 3678899999876654 55588899999998886322 27999999999999996
No 164
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.31 E-value=0.002 Score=70.68 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHhh
Q 006316 176 DNEESAKSAIDKL 188 (650)
Q Consensus 176 ~~~e~A~~Ai~~l 188 (650)
.+..++.+|++.+
T Consensus 207 k~~~eiIrClka~ 219 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHHH
Confidence 3445566666554
No 165
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00012 Score=82.48 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=59.3
Q ss_pred HHHHhhhcchhhhhccCCCCccchhhhccCCChHHHHHhcCChHHHHHHHHHHH--HHHHHHHhh
Q 006316 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM--EVLRNVAQQ 628 (650)
Q Consensus 566 ~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~--~~l~~~~~~ 628 (650)
-+|.|||+||+.++.+.|..|.||||||||.....+|.+|..++.|+..|++|+ +++..|-++
T Consensus 2607 e~Q~la~l~wgqhe~~l~a~~s~~sGfL~dek~~g~llgi~ce~p~eafVdaa~ndd~i~~H~qe 2671 (3015)
T KOG0943|consen 2607 ERQALAELLWGQHEAMLPAFASKISGFLLDEKPAGLLLGIACEDPLEAFVDAAMNDDLIIAHGQE 2671 (3015)
T ss_pred hhccchhhcchhhhhHHHHHHHhhhhhhhccchHHHHHHHhhcCcHHHHHHHhcchHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999 888888754
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.26 E-value=0.00064 Score=65.18 Aligned_cols=90 Identities=28% Similarity=0.335 Sum_probs=80.2
Q ss_pred hHHHHHHHHcCCccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEE
Q 006316 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITS 350 (650)
Q Consensus 271 ~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~ 350 (650)
-|..|...|.+....++.+.|.++.++ .|||.||...++-|.|.+.|+.||.|+.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a-------------------------~l~V~nl~~~~sndll~~~f~~fg~~e~ 60 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA-------------------------ELYVVNLMQGASNDLLEQAFRRFGPIER 60 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc-------------------------eEEEEecchhhhhHHHHHhhhhcCccch
Confidence 466677788999999999999888662 6999999999999999999999999999
Q ss_pred EEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCc
Q 006316 351 CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385 (650)
Q Consensus 351 ~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~ 385 (650)
..+..|..++..+-++|.|...-.|.+|.....-.
T Consensus 61 av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 61 AVAKVDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred heeeecccccccccchhhhhcchhHHHHHHHhccC
Confidence 99999999999999999999999999998876433
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=0.00042 Score=66.35 Aligned_cols=88 Identities=24% Similarity=0.394 Sum_probs=78.5
Q ss_pred HHHHHcccccCccCCCCcccccccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEE
Q 006316 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGF 172 (650)
Q Consensus 93 ~A~~Al~~ln~~~i~g~~i~v~~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~af 172 (650)
-|+.|-..|++....|+.++|.|... ..|+|.||..-++++.|...|+.||.|....+..|..++..+-++
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~ 76 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGI 76 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccch
Confidence 35556666789999999999998763 469999999999999999999999999999999998899999999
Q ss_pred EEECCHHHHHHHHHhhC
Q 006316 173 VQFDNEESAKSAIDKLN 189 (650)
Q Consensus 173 V~F~~~e~A~~Ai~~ln 189 (650)
|.|...-.|.+|+..++
T Consensus 77 v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 77 VEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhhcchhHHHHHHHhc
Confidence 99999999999998774
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.17 E-value=0.001 Score=65.84 Aligned_cols=79 Identities=20% Similarity=0.445 Sum_probs=63.9
Q ss_pred eeEEecCCCCCCHHHH------HHHHhhcCCeEEEEEeeCC--CCCCcc-e-EEEEcCCHHHHHHHHHHhCCceecCeeE
Q 006316 323 NLYVKNLDDSISDDKL------KELFSEFGTITSCKVMRDP--NGISRG-S-GFVAFSTAEEASKALTEMNGKMVVSKPL 392 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l------~~~F~~~G~i~~~~i~~~~--~g~s~g-~-~fV~f~~~~~A~~A~~~l~~~~~~g~~l 392 (650)
-+||-+|+..+-+|++ .++|.+||.|..|.|-+.. .....+ + .+|+|.+.|||.++|.+.+|..++||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 4899999998877762 4789999999999887654 111112 2 3999999999999999999999999999
Q ss_pred EEEecchhH
Q 006316 393 YVALAQRKE 401 (650)
Q Consensus 393 ~V~~a~~~~ 401 (650)
+.++...|-
T Consensus 196 katYGTTKY 204 (480)
T COG5175 196 KATYGTTKY 204 (480)
T ss_pred eeecCchHH
Confidence 999987653
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.12 E-value=0.00063 Score=67.24 Aligned_cols=80 Identities=23% Similarity=0.438 Sum_probs=64.3
Q ss_pred CCCCEEEEcCCCCCCCHHHH------HHHHhcCCCEEEEEEEeeCCCCccc-cEE--EEEecchhHHHHHcccccCccCC
Q 006316 37 FVSTSLYVGDLDLSVNDSQL------YDLFNQMGQVVSVRVCRDLSTRRSL-GYG--YVNYNAAHEATRALDELNFTPLN 107 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L------~~~Fs~~G~V~~i~v~~d~~t~~s~-G~a--~V~F~~~~~A~~Al~~ln~~~i~ 107 (650)
-...-+||-+|++.+..+++ .++|.+||.|..|-|-+...+-+|. +.+ ||.|.+.+||.+|+...++..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34567899999998887762 5899999999999887764222222 334 99999999999999999999999
Q ss_pred CCccccccc
Q 006316 108 GKPIRIMYS 116 (650)
Q Consensus 108 g~~i~v~~s 116 (650)
||-|+..+-
T Consensus 192 Gr~lkatYG 200 (480)
T COG5175 192 GRVLKATYG 200 (480)
T ss_pred CceEeeecC
Confidence 999988754
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.98 E-value=0.00035 Score=67.13 Aligned_cols=64 Identities=20% Similarity=0.373 Sum_probs=56.1
Q ss_pred HHHHHHHh-hcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 336 DKLKELFS-EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 336 ~~l~~~F~-~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
|||...|+ +||+|++++|-.+-.-.-+|-++|.|...++|++|++.|||..+.|++|+..+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 56666666 89999999887776667889999999999999999999999999999999988753
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0022 Score=67.92 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=65.0
Q ss_pred CCceeEEecCCCCCC------HHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec-CeeE
Q 006316 320 EGLNLYVKNLDDSIS------DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPL 392 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t------~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l 392 (650)
-...|+|-|+|---. ..-|.++|+++|+|..+.+..+..|.++||.|++|.+..+|..|++.|||+.++ .+..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 345788999885332 234567899999999999999998889999999999999999999999999996 5667
Q ss_pred EEEecc
Q 006316 393 YVALAQ 398 (650)
Q Consensus 393 ~V~~a~ 398 (650)
.|..-+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 776644
No 172
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.90 E-value=0.0033 Score=68.98 Aligned_cols=10 Identities=20% Similarity=0.704 Sum_probs=4.5
Q ss_pred hhhhccCCCh
Q 006316 589 VTGMLLEMDQ 598 (650)
Q Consensus 589 itgm~l~~~~ 598 (650)
|--|+||.|.
T Consensus 718 ik~~ILevne 727 (1102)
T KOG1924|consen 718 IKNVILEVNE 727 (1102)
T ss_pred HHHHHhhccH
Confidence 3344455443
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.85 E-value=0.00083 Score=68.79 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=56.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEee---CCC--Ccc--------ccEEEEEecchhHHHHHcccccC
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD---LST--RRS--------LGYGYVNYNAAHEATRALDELNF 103 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d---~~t--~~s--------~G~a~V~F~~~~~A~~Al~~ln~ 103 (650)
-++++|.+.|||.+-.-+.|.++|+.+|.|.+|+||.. ... +.+ +=+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999999999999999999999999987 211 111 34799999999999999988753
No 174
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.84 E-value=0.0028 Score=46.62 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=40.4
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHH
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~ 379 (650)
.|-|.+.+.+..+ ++...|..||+|+.+.+... +.+.+|+|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 4677777766554 45669999999999988733 339999999999999985
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0023 Score=67.79 Aligned_cols=79 Identities=28% Similarity=0.398 Sum_probs=64.3
Q ss_pred CCceeEecCCCccc------chHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceec-Ceee
Q 006316 126 GAGNIFIKNLDKSI------DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQV 198 (650)
Q Consensus 126 ~~~~l~V~nLp~~i------~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~-g~~l 198 (650)
-...|+|.|+|.-- -..-|..+|+++|.|....+..++.|..+||.|++|++..+|..|++.|||..|. +++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 34568888887422 2345678999999999999999988889999999999999999999999998764 5666
Q ss_pred EEcccc
Q 006316 199 FVGPFL 204 (650)
Q Consensus 199 ~v~~~~ 204 (650)
.+..+.
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 665543
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.77 E-value=0.00066 Score=65.03 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=62.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCC--------Cccc----cEEEEEecchhHHHHHcccccCcc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST--------RRSL----GYGYVNYNAAHEATRALDELNFTP 105 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t--------~~s~----G~a~V~F~~~~~A~~Al~~ln~~~ 105 (650)
.+-.||++++|+..+-..|+++|+.||.|-.|.+-+...+ +.+. --+||+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4468999999999999999999999999999988776554 2222 247899999999999999999999
Q ss_pred CCCCcc
Q 006316 106 LNGKPI 111 (650)
Q Consensus 106 i~g~~i 111 (650)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998653
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.77 E-value=0.0034 Score=66.87 Aligned_cols=84 Identities=21% Similarity=0.246 Sum_probs=68.6
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhh-cCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee---cCeeEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSE-FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV---VSKPLY 393 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~---~g~~l~ 393 (650)
+..+..|||.||-.-+|.-.|+.++.+ .|.|++.+|-+- +..|||.|.+.++|...+..|||... +.+.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 345668999999999999999999985 667777733322 33799999999999999999999876 678899
Q ss_pred EEecchhHHHHHh
Q 006316 394 VALAQRKEERRAR 406 (650)
Q Consensus 394 V~~a~~~~~r~~~ 406 (650)
+.|....+..+.+
T Consensus 516 adf~~~deld~hr 528 (718)
T KOG2416|consen 516 ADFVRADELDKHR 528 (718)
T ss_pred eeecchhHHHHHh
Confidence 9999877765544
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.73 E-value=0.0048 Score=60.13 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=55.9
Q ss_pred HHHHHHHHhhcCCeEEEEEeeCCCCC--CcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHH
Q 006316 335 DDKLKELFSEFGTITSCKVMRDPNGI--SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402 (650)
Q Consensus 335 ~~~l~~~F~~~G~i~~~~i~~~~~g~--s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~ 402 (650)
++++++.+++||+|..|.|+..++-- -----||+|+..++|.+|+-.|||++|+|+.+...|.+-..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekf 369 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKF 369 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhh
Confidence 56888999999999999998775211 122469999999999999999999999999998888765443
No 179
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.65 E-value=0.0017 Score=66.55 Aligned_cols=69 Identities=23% Similarity=0.401 Sum_probs=58.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeC---C---CCC--------CcceEEEEcCCHHHHHHHHHHhCC
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD---P---NGI--------SRGSGFVAFSTAEEASKALTEMNG 384 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---~---~g~--------s~g~~fV~f~~~~~A~~A~~~l~~ 384 (650)
.++++|.+.|||.+-.-+.|.++|+.+|.|.+|+|... + .+. .+-+|||+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47789999999999999999999999999999999876 2 121 256899999999999999998864
Q ss_pred cee
Q 006316 385 KMV 387 (650)
Q Consensus 385 ~~~ 387 (650)
...
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 433
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.64 E-value=0.00055 Score=65.77 Aligned_cols=63 Identities=25% Similarity=0.492 Sum_probs=52.8
Q ss_pred HHHHHHHh-cCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 54 SQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 54 ~~L~~~Fs-~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
++|+.-|+ +||.|.++.||.. ...--.|.+||.|...++|++|++.||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44444454 7999999988876 445567899999999999999999999999999999887664
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.52 E-value=0.0066 Score=50.96 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=50.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCC-------CCccccEEEEEecchhHHHHHcccccCccCCCCc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS-------TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~-------t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~ 110 (650)
..+.|.|-+-|+. ....|.+.|++||.|++..-+.+.. ......+..|.|.++.+|.+||.+ |+..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3578999999987 6777889999999998875110000 001113899999999999999965 999998865
Q ss_pred c-ccccc
Q 006316 111 I-RIMYS 116 (650)
Q Consensus 111 i-~v~~s 116 (650)
+ -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 34443
No 182
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.33 E-value=0.018 Score=48.34 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=49.7
Q ss_pred CceeEecCCCcccchHHHHhhhcccCceeEEEEe-eC-------CCCCcccEEEEEECCHHHHHHHHHhhCCceecCeee
Q 006316 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA-TD-------SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198 (650)
Q Consensus 127 ~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~-~d-------~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l 198 (650)
.+-|.|-+.|+. ....|.+.|+.||+|++..-. .+ .......+-.|+|.+..+|.+||. .||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 345888899988 667788999999999876411 10 011245688999999999999995 59999988655
Q ss_pred E
Q 006316 199 F 199 (650)
Q Consensus 199 ~ 199 (650)
-
T Consensus 84 v 84 (100)
T PF05172_consen 84 V 84 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 183
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.32 E-value=0.0026 Score=61.10 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=59.7
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC---------CCCc----ceEEEEcCCHHHHHHHHHHhCCceec
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN---------GISR----GSGFVAFSTAEEASKALTEMNGKMVV 388 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~---------g~s~----g~~fV~f~~~~~A~~A~~~l~~~~~~ 388 (650)
-.||++|||..+.-..||++|+.||.|-.|.+-.... |.++ .-|+|+|.+-..|......|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 4799999999999999999999999999998876542 2222 23689999999999999999999998
Q ss_pred Cee
Q 006316 389 SKP 391 (650)
Q Consensus 389 g~~ 391 (650)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 874
No 184
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.11 E-value=0.027 Score=50.24 Aligned_cols=59 Identities=22% Similarity=0.407 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHHH
Q 006316 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403 (650)
Q Consensus 337 ~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r 403 (650)
+|.+.|..||++.-+|+..+ .-+|+|.+-+.|.+|+. ++|..++|+.|.|++..+....
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWLK 110 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-------
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHHH
Confidence 67778899999999988865 68999999999999985 8999999999999998775543
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.00 E-value=0.0086 Score=53.33 Aligned_cols=72 Identities=28% Similarity=0.367 Sum_probs=53.5
Q ss_pred CCCCEEEEcCCCC------CCCH---HHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCC
Q 006316 37 FVSTSLYVGDLDL------SVND---SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107 (650)
Q Consensus 37 ~~~~~L~V~nLp~------~vte---~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~ 107 (650)
.+..+|.|.=+.+ ..++ .+|.+.|+.||.|+-||+..+ .-||.|.+.+.|-+|+ .+++..|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEEC
Confidence 3456787776662 2222 367889999999999988876 3699999999999999 67999999
Q ss_pred CCcccccccc
Q 006316 108 GKPIRIMYSY 117 (650)
Q Consensus 108 g~~i~v~~s~ 117 (650)
|+.|+|..-.
T Consensus 96 g~~l~i~LKt 105 (146)
T PF08952_consen 96 GRTLKIRLKT 105 (146)
T ss_dssp TEEEEEEE--
T ss_pred CEEEEEEeCC
Confidence 9999997544
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.80 E-value=0.0042 Score=66.22 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccC--
Q 006316 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL-- 106 (650)
Q Consensus 30 ~~~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs-~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i-- 106 (650)
-.+.++...+..|||.||--..|...|++++. .+|.|.+.||-+=+ .+|||.|.+.++|......||+..|
T Consensus 435 vpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK------ShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 435 VPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK------SHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh------cceeEecccHHHHHHHHHHHhccccCC
Confidence 34455777899999999999999999999997 67788888554332 2899999999999999999998654
Q ss_pred -CCCcccccccc
Q 006316 107 -NGKPIRIMYSY 117 (650)
Q Consensus 107 -~g~~i~v~~s~ 117 (650)
+++.|.+.|..
T Consensus 509 sNPK~L~adf~~ 520 (718)
T KOG2416|consen 509 SNPKHLIADFVR 520 (718)
T ss_pred CCCceeEeeecc
Confidence 34555555443
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.62 E-value=0.032 Score=48.89 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=60.1
Q ss_pred CCCCCEEEEcCCCCCCCH-HH---HHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 36 QFVSTSLYVGDLDLSVND-SQ---LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte-~~---L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
..+..+|.|+=|..++.- +| +...++.||+|.+|..|-.. .|.|.|.+..+|.+|+..+.. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 457899999988776653 33 45667889999999998642 599999999999999987654 5678888
Q ss_pred cccccccC
Q 006316 112 RIMYSYRD 119 (650)
Q Consensus 112 ~v~~s~~~ 119 (650)
++.|.++.
T Consensus 155 qCsWqqrF 162 (166)
T PF15023_consen 155 QCSWQQRF 162 (166)
T ss_pred Eeeccccc
Confidence 88887654
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.34 E-value=0.083 Score=39.92 Aligned_cols=54 Identities=28% Similarity=0.419 Sum_probs=44.6
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhc---CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEF---GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l 382 (650)
..|+|++++ +.+-++|+.+|..| .....|..+.|. .|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 479999985 57888899999998 246678888874 5889999999999999764
No 189
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.34 E-value=0.47 Score=47.06 Aligned_cols=184 Identities=15% Similarity=0.218 Sum_probs=112.5
Q ss_pred cccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCC--------CCCcceeEEEEeCChhhHHHH----HHHHcC--C
Q 006316 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA--------DGKSKCFGFVNFDDPDDAARS----VEALNG--K 282 (650)
Q Consensus 217 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~--------~g~srg~afV~f~~~~~A~~A----i~~l~g--~ 282 (650)
+.+.|.+.|+..+++-..+-..|.+||.|+++.++.+. +.+......+.|-+.+.+-.. +..|+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999999999998875 234456788999888776433 222332 2
Q ss_pred ccCCeeEEEecchhhhHH----HHHHhh---hhhhhhh-hhhhccCCceeEEecCCCCCCHHHHHHHH---hhcC----C
Q 006316 283 KFDDKEWYVGKAQKKYER----EMELKG---KFEQSLK-ETADKFEGLNLYVKNLDDSISDDKLKELF---SEFG----T 347 (650)
Q Consensus 283 ~~~g~~l~v~~a~~~~~~----~~~~~~---~~~~~~~-~~~~~~~~~~l~V~nl~~~~t~~~l~~~F---~~~G----~ 347 (650)
.+....|.+.+..-+... ..+... ......+ +.......+.|.|.--....+++-+.+.+ ..-+ .
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEE
Confidence 245556665554321110 000000 0011111 22233455677776553333443333332 2112 4
Q ss_pred eEEEEEeeCC---CCCCcceEEEEcCCHHHHHHHHHHhC--Ccee-cCeeEEEEecchh
Q 006316 348 ITSCKVMRDP---NGISRGSGFVAFSTAEEASKALTEMN--GKMV-VSKPLYVALAQRK 400 (650)
Q Consensus 348 i~~~~i~~~~---~g~s~g~~fV~f~~~~~A~~A~~~l~--~~~~-~g~~l~V~~a~~~ 400 (650)
|++|.++... +.-...||.++|-+...|...+.-+. +... -.+..+|++....
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~~ 232 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPHA 232 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCcc
Confidence 7888887653 34567799999999999999988775 3333 2566778776543
No 190
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.03 E-value=0.065 Score=52.51 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=52.9
Q ss_pred HHHHHHHhcccCceeEEEEEeCCCCC--cceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchh
Q 006316 232 EDDLKKIFGEFGIITSTAVMRDADGK--SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 232 ~e~l~~~F~~~G~i~~~~v~~~~~g~--srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 296 (650)
++++++.+++||.|..|.|....+.- ..--.||+|++.++|.+|+-.|||+.|+|+.+...+..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 45788899999999999888764321 123469999999999999999999999999988776543
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.65 E-value=0.024 Score=53.30 Aligned_cols=71 Identities=8% Similarity=0.134 Sum_probs=46.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhc-CCCE---EEEEEEeeC-CC-CccccEEEEEecchhHHHHHcccccCccCCC
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQ-MGQV---VSVRVCRDL-ST-RRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~-~G~V---~~i~v~~d~-~t-~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g 108 (650)
...+|.|+.||+++||+++.+.++. ++.. ..+.-..+. .. .....-|||.|.+.+++....+.+++..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3569999999999999999998877 6654 333311221 11 1233579999999999999999988866543
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.99 E-value=0.21 Score=37.79 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=43.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcC----CCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccc
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~----G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~l 101 (650)
-+|+|+++.. ++.++|+.+|..| ++ ..|.=+-|. .|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4799999855 8999999999998 65 467766663 3899999999999999754
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.82 E-value=0.21 Score=43.99 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=54.1
Q ss_pred ccCCceeEEecCCCCCC-HHHH---HHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEE
Q 006316 318 KFEGLNLYVKNLDDSIS-DDKL---KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t-~~~l---~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 393 (650)
..+..+|.|+=|..++. .+|| ...++.||.|.+|..... ..|.|.|.+..+|-+|+.+++. ..-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC------ceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 45666788876655552 3444 455688999999987643 3799999999999999999987 44566666
Q ss_pred EEecc
Q 006316 394 VALAQ 398 (650)
Q Consensus 394 V~~a~ 398 (650)
.+|-+
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 66643
No 194
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.79 E-value=0.8 Score=45.45 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=100.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeC-------CCCccccEEEEEecchhHHHHHc----cccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL-------STRRSLGYGYVNYNAAHEATRAL----DELN 102 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~-------~t~~s~G~a~V~F~~~~~A~~Al----~~ln 102 (650)
...+.+|+|.+.||..+++--.+...|-+||+|.+|.++.+. ...+......+.|-+.+.+-... .+|+
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999875 01122346889999998875443 2333
Q ss_pred --CccCCCCccccccccc---------Cc--------------ccccCC-CceeEecCCCcccchHHHH-h---hhcccC
Q 006316 103 --FTPLNGKPIRIMYSYR---------DP--------------TIRKSG-AGNIFIKNLDKSIDNKALH-D---TFSTFG 152 (650)
Q Consensus 103 --~~~i~g~~i~v~~s~~---------~~--------------~~~~~~-~~~l~V~nLp~~i~~~~L~-~---~Fs~~G 152 (650)
...++...+++.|..- +. .....+ .+.|.|. +...++.+++. + ++..-+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCC
Confidence 2346777777765321 00 001112 2334443 23444333332 2 223333
Q ss_pred ----ceeEEEEeeC---CCCCcccEEEEEECCHHHHHHHHHhhC
Q 006316 153 ----NILSCKVATD---SLGQSRGYGFVQFDNEESAKSAIDKLN 189 (650)
Q Consensus 153 ----~I~~~~v~~d---~~g~skg~afV~F~~~e~A~~Ai~~ln 189 (650)
-++++.++.. .....+.||.++|-+...|...++.+.
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 3667776654 223467899999999999999998765
No 195
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.61 E-value=0.27 Score=39.22 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=40.1
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~ 383 (650)
..||. .|.++...||.++|+.||.|. |..+.|. .|||.....+.|..++..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 34455 999999999999999999884 4455542 79999999999999998876
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.11 E-value=0.38 Score=38.45 Aligned_cols=54 Identities=24% Similarity=0.413 Sum_probs=39.9
Q ss_pred eeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhC
Q 006316 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189 (650)
Q Consensus 129 ~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~ln 189 (650)
.||--..|...-..||.++|+.||.|.- ..+ +...|||...+.+.|..++..++
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~V-sWi------~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYV-SWI------NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEE-EEE------CTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEE-EEE------cCCcEEEEeecHHHHHHHHHHhc
Confidence 3554449999999999999999999853 333 34579999999999999998775
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.03 E-value=0.041 Score=55.46 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=61.6
Q ss_pred CCEEEEcCCCCCCCHHHHH---HHHhcCCCEEEEEEEeeCCCC---ccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 39 STSLYVGDLDLSVNDSQLY---DLFNQMGQVVSVRVCRDLSTR---RSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~---~~Fs~~G~V~~i~v~~d~~t~---~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
..-+||-+|+..+..+.+. +.|.+||.|.+|.+.++..+- ....-+||.|...+||.+|++..++..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4567888999876655543 689999999999999876311 1112489999999999999999999999999987
Q ss_pred ccccc
Q 006316 113 IMYSY 117 (650)
Q Consensus 113 v~~s~ 117 (650)
..+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 76543
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.80 E-value=0.18 Score=53.88 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=57.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhc--CCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccC--ccCCCCcc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQ--MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF--TPLNGKPI 111 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~--~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~--~~i~g~~i 111 (650)
....|.|+|+.||..+.+++++-||+. |-++++|...... -=||.|++..||+.|.+.|.. ..|.|++|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 445688899999999999999999965 6688899887652 249999999999999988864 35888887
Q ss_pred cc
Q 006316 112 RI 113 (650)
Q Consensus 112 ~v 113 (650)
.-
T Consensus 245 mA 246 (684)
T KOG2591|consen 245 MA 246 (684)
T ss_pred hh
Confidence 43
No 199
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.69 E-value=0.058 Score=56.44 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=62.5
Q ss_pred CCCCEEEEcCCCCCC-CHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 37 FVSTSLYVGDLDLSV-NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 37 ~~~~~L~V~nLp~~v-te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
...+.|-+.-.|... |.++|..+|.+||.|..|.|--... .|.|.|.+..+|-+|. ...+..|+++.|+|.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchh-ccccceecCceeEEEE
Confidence 356777777777755 4689999999999999998865422 5999999999997777 4488899999999999
Q ss_pred cccCc
Q 006316 116 SYRDP 120 (650)
Q Consensus 116 s~~~~ 120 (650)
-+..+
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 87654
No 200
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.61 E-value=0.27 Score=52.52 Aligned_cols=67 Identities=13% Similarity=0.350 Sum_probs=53.3
Q ss_pred CceeEecCCCcccchHHHHhhhcc--cCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCC--ceecCeeeE
Q 006316 127 AGNIFIKNLDKSIDNKALHDTFST--FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG--MLLNDKQVF 199 (650)
Q Consensus 127 ~~~l~V~nLp~~i~~~~L~~~Fs~--~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng--~~i~g~~l~ 199 (650)
.|.|+|+-||...-.++++.+|+. +-.+.+|.+..+. -.||+|+++.||..|.+.|.. +.|.|+.|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 466889999999999999999965 5678899987642 379999999999999987753 345555543
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.49 E-value=0.28 Score=46.24 Aligned_cols=62 Identities=24% Similarity=0.274 Sum_probs=46.8
Q ss_pred CHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC--CceecCeeEEEEecchh
Q 006316 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN--GKMVVSKPLYVALAQRK 400 (650)
Q Consensus 334 t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~--~~~~~g~~l~V~~a~~~ 400 (650)
..+.|+++|..|+.+..+.+++. =+-..|.|.+.++|.+|...|+ +..+.|+.++|.|++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999999888765 2357899999999999999999 99999999999998543
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.48 E-value=0.48 Score=46.93 Aligned_cols=64 Identities=25% Similarity=0.288 Sum_probs=51.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~ 110 (650)
...+-|-+.|+. .-..|..+|++||.|++.... .+++ +-+|.|.+..+|++||.+ |+.+|+|..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~---~ngN---wMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP---SNGN---WMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC---CCCc---eEEEEecchhHHHHhhhh-cCeeeccce
Confidence 578889999885 557788999999999876433 2333 899999999999999966 888888753
No 203
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.39 E-value=0.21 Score=47.06 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=46.3
Q ss_pred CHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHccccc--CccCCCCccccccccc
Q 006316 52 NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN--FTPLNGKPIRIMYSYR 118 (650)
Q Consensus 52 te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln--~~~i~g~~i~v~~s~~ 118 (650)
..+.|+++|+.++.+.++.+.+. .+-..|.|.+.++|.+|...|+ +..+.|..++|.+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999999888764 3458999999999999999999 8899999999988743
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.21 E-value=0.89 Score=39.00 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=49.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCC
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~-G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g 108 (650)
+..+.+...|.-++-.+|..+.+.+ ..|..++|.||.. .++--+++.|.+.++|......+||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445555555555566676666665 4788999999854 344578889999999999999999876643
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.73 E-value=0.079 Score=59.21 Aligned_cols=73 Identities=25% Similarity=0.374 Sum_probs=62.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCcc--CCCCcccccccc
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP--LNGKPIRIMYSY 117 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~--i~g~~i~v~~s~ 117 (650)
...++.|.+-+.+-.-|..+|+.||.|.++|..||-. .|.|.|.+.+.|..|++.|++.. ..|-+.+|+++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3456666777888899999999999999999998854 79999999999999999999876 468889998875
Q ss_pred c
Q 006316 118 R 118 (650)
Q Consensus 118 ~ 118 (650)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 4
No 206
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.48 E-value=0.083 Score=53.30 Aligned_cols=79 Identities=22% Similarity=0.422 Sum_probs=61.8
Q ss_pred eeEEecCCCCCCHHHHH---HHHhhcCCeEEEEEeeCCC--CC--CcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 323 NLYVKNLDDSISDDKLK---ELFSEFGTITSCKVMRDPN--GI--SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~---~~F~~~G~i~~~~i~~~~~--g~--s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
-+||-+|+..+.++++. +.|.+||.|.+|.+..+.. .. ...-++|+|...++|.++|...+|...+|+.|+..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 47788888877666655 4688999999999888652 11 11237999999999999999999999999998888
Q ss_pred ecchhH
Q 006316 396 LAQRKE 401 (650)
Q Consensus 396 ~a~~~~ 401 (650)
+...+-
T Consensus 159 ~gttky 164 (327)
T KOG2068|consen 159 LGTTKY 164 (327)
T ss_pred hCCCcc
Confidence 776554
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.08 E-value=1.3 Score=37.90 Aligned_cols=65 Identities=22% Similarity=0.186 Sum_probs=50.4
Q ss_pred eeEEecCCCCCCHHHHHHHHhhc-CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006316 323 NLYVKNLDDSISDDKLKELFSEF-GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~-G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~ 388 (650)
.+.+-..+..++.++|..+.+.+ ..|..++|+++... ++--+++.|.+.++|..-...+||+.++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34455566666777887776766 46788899988542 5657899999999999999999999885
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.50 E-value=0.52 Score=36.26 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 49 LSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 49 ~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
..++-++++..+..|+.. +|..| .| || ||.|.+.++|++|....++..+.+-.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d-~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDD-RT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEec-CC----EE-EEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 367889999999999763 44445 33 45 999999999999999888877665443
No 209
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.41 E-value=1.3 Score=47.94 Aligned_cols=125 Identities=17% Similarity=0.261 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhcC----CCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCc
Q 006316 36 QFVSTSLYVGDLDL-SVNDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (650)
Q Consensus 36 ~~~~~~L~V~nLp~-~vte~~L~~~Fs~~----G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~ 110 (650)
...+++|-|.|+.| .+.-++|+-+|+.| |.|++|.||..-. -.++|.-..+.|-+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF--------------------GkeRM~eEeV~GP~ 230 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF--------------------GKERMKEEEVHGPP 230 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh--------------------hHHHhhhhcccCCh
Confidence 45689999999999 58889999999987 6899999998622 22344445566665
Q ss_pred ccccccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCC
Q 006316 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190 (650)
Q Consensus 111 i~v~~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng 190 (650)
+.+.......... . .+....++-.+..++.|+- ..+ .-.||.|+|.+.+.|....+.+.|
T Consensus 231 ~el~~~~e~~~~s--~--------sD~ee~~~~~~~kLR~Yq~-~rL---------kYYyAVvecDsi~tA~~vYe~CDG 290 (650)
T KOG2318|consen 231 KELFKPVEEYKES--E--------SDDEEEEDVDREKLRQYQL-NRL---------KYYYAVVECDSIETAKAVYEECDG 290 (650)
T ss_pred hhhccccccCccc--c--------cchhhhhhHHHHHHHHHHh-hhh---------eeEEEEEEecCchHHHHHHHhcCc
Confidence 5543211110000 0 1111112223444555531 111 235799999999999999999999
Q ss_pred ceecCeeeEE
Q 006316 191 MLLNDKQVFV 200 (650)
Q Consensus 191 ~~i~g~~l~v 200 (650)
..+......+
T Consensus 291 ~EfEsS~~~~ 300 (650)
T KOG2318|consen 291 IEFESSANKL 300 (650)
T ss_pred ceecccccee
Confidence 9887554444
No 210
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.90 E-value=0.48 Score=44.53 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=46.4
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhh-cCCe---EEEEEeeCC--C-CCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSE-FGTI---TSCKVMRDP--N-GISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i---~~~~i~~~~--~-g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~ 388 (650)
.+..|.|++||..+|++++.+.++. ++.- ..+.-.... . -....-|+|.|.+.++.......++|+.|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4568999999999999999998887 6665 233211222 1 122346899999999999999999998873
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.62 E-value=0.22 Score=55.79 Aligned_cols=74 Identities=30% Similarity=0.437 Sum_probs=65.0
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee--cCeeEEEEecchh
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVALAQRK 400 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~--~g~~l~V~~a~~~ 400 (650)
..++.|..-..+-.-|-.+|++||.|.+++.+++-+ .+.|.|.+.+.|..|++.++|+.+ .|-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 356777788889999999999999999999988855 799999999999999999999977 5788999998765
Q ss_pred H
Q 006316 401 E 401 (650)
Q Consensus 401 ~ 401 (650)
+
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 4
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.39 E-value=0.68 Score=45.95 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=51.4
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeE-EEEecchhH
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL-YVALAQRKE 401 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l-~V~~a~~~~ 401 (650)
=|.|-+++..-. .-|..+|++||+|.+.... .+ ..|-.|.|.++-+|.+||. .||++|+|..+ -|.-...+.
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~n---gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SN---GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC--CC---CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 456666665543 4577899999999887544 22 2389999999999999997 58999987653 444433443
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.15 E-value=1.7 Score=34.43 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHhhcC-----CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 330 DDSISDDKLKELFSEFG-----TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 330 ~~~~t~~~l~~~F~~~G-----~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
-+.++..+|..++..-+ .|-.++|..+ |.||+-... .|..+++.|++..+.|+.+.|..|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45678888888887764 4667888776 899988764 789999999999999999999865
No 214
>PHA03378 EBNA-3B; Provisional
Probab=86.61 E-value=11 Score=41.89 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=12.1
Q ss_pred hHHHHHHhhhcchhhhhccCCC
Q 006316 563 PEQQRTLLGENLYPLVDQLEHD 584 (650)
Q Consensus 563 ~~~~~~~~g~~l~~~~~~~~~~ 584 (650)
+.-+|..-+|++-+.+-.-.|.
T Consensus 838 ps~k~~a~~~r~~~~~~~p~p~ 859 (991)
T PHA03378 838 PSLKKPAALERQAAAGPTPSPG 859 (991)
T ss_pred cccccchhhhhhcccCCCCCCC
Confidence 4445555666666665544443
No 215
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.10 E-value=0.42 Score=50.28 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=56.3
Q ss_pred eeEEecCCCCC-CHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 323 NLYVKNLDDSI-SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 323 ~l~V~nl~~~~-t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
.|-+.-.+... |-++|...|.+||+|+.|.+-... --|.|+|.+..+|-+|. ..++..|+++.|+|.|-+.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCch-----hhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 34444445544 568999999999999999876542 26899999999997775 4789999999999999765
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.70 E-value=0.32 Score=53.31 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..+.-++||+|+-.-+..+-+..+...+|-|.++.... |+|..|.....+.+|+..|+...++|+.+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34567999999999999999999999999998876643 899999999999999988888888888876643
Q ss_pred cc-----cC---cc--------cccCCCceeEecCCCcccchHHHHhhhcccCceeE
Q 006316 116 SY-----RD---PT--------IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156 (650)
Q Consensus 116 s~-----~~---~~--------~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~ 156 (650)
.. .+ .. ...+...-.+|.+++...+.......+...+...+
T Consensus 108 d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s 164 (668)
T KOG2253|consen 108 DEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAAS 164 (668)
T ss_pred hhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhh
Confidence 11 00 00 00011223566777766666666555555544443
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.57 E-value=2.1 Score=45.06 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=61.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCC---Cccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG---KPIRIM 114 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~-G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g---~~i~v~ 114 (650)
++.|.|-.+|..+|-.||..++..+ -.|.+|+++||.... .--.+|.|.+.+||....+.+|+..|+. ..+++-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll 151 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLL 151 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEE
Confidence 7899999999999999999988765 479999999986533 3468899999999999999999887654 344444
Q ss_pred c
Q 006316 115 Y 115 (650)
Q Consensus 115 ~ 115 (650)
|
T Consensus 152 ~ 152 (493)
T KOG0804|consen 152 Y 152 (493)
T ss_pred E
Confidence 3
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.55 E-value=2 Score=45.16 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=58.7
Q ss_pred CceeEecCCCcccchHHHHhhhcccC-ceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCe
Q 006316 127 AGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (650)
Q Consensus 127 ~~~l~V~nLp~~i~~~~L~~~Fs~~G-~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~ 196 (650)
...|+|-.+|..++..||..++..|- .|.++++++|..+ ++-..+|.|.+.++|....+.+||..++.-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 67899999999999999999987664 6899999996443 455688999999999999999999887653
No 219
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.51 E-value=0.044 Score=59.77 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=61.2
Q ss_pred cccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecc
Q 006316 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (650)
Q Consensus 217 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 294 (650)
....+||+|+...+..+-++.+...+|.|.++.... |||+.|..+.....|+..++...+++..+.+..-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 346799999999999999999999999999887653 9999999999999999999999998888877653
No 220
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.07 E-value=3.7 Score=31.59 Aligned_cols=56 Identities=13% Similarity=0.362 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEE
Q 006316 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (650)
Q Consensus 331 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V 394 (650)
..++-++++..+..|+- .+|..+++| =||.|.+.+||+++....+|+.+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 45788999999999952 234445432 379999999999999999999998877654
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=84.30 E-value=3.1 Score=37.92 Aligned_cols=115 Identities=14% Similarity=0.051 Sum_probs=73.8
Q ss_pred EEEEcCCC--CCCCHHHHHHHHhc-CCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 41 SLYVGDLD--LSVNDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 41 ~L~V~nLp--~~vte~~L~~~Fs~-~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
...|+.+- .+.+-..|.+.+.. ++....+.+..= ..++..+.|.+.+|+.++++. ....++|..+.+....
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhc
Confidence 44555553 34667777776654 233223333221 124899999999999999964 5566788888887544
Q ss_pred cCcccccCC----CceeEecCCCccc-chHHHHhhhcccCceeEEEEee
Q 006316 118 RDPTIRKSG----AGNIFIKNLDKSI-DNKALHDTFSTFGNILSCKVAT 161 (650)
Q Consensus 118 ~~~~~~~~~----~~~l~V~nLp~~i-~~~~L~~~Fs~~G~I~~~~v~~ 161 (650)
.+....... ..=|.|.|||... +++-|..+.+.+|.+..+...+
T Consensus 91 ~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 91 PDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 322211111 1226689999985 7788899999999998876544
No 222
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=84.17 E-value=0.69 Score=37.76 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=45.5
Q ss_pred EEEEecchhHHHHHcccccC-ccCCCCccccccccc--Cc-----ccccCCCceeEecCCCcccchHHHHhhhc
Q 006316 84 GYVNYNAAHEATRALDELNF-TPLNGKPIRIMYSYR--DP-----TIRKSGAGNIFIKNLDKSIDNKALHDTFS 149 (650)
Q Consensus 84 a~V~F~~~~~A~~Al~~ln~-~~i~g~~i~v~~s~~--~~-----~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs 149 (650)
|+|.|.+..-|++.+..-.+ ..+++..++|..+.- .. -......++|.|.|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999965433 346666666653321 11 11223456899999999999999997654
No 223
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.50 E-value=2.6 Score=33.33 Aligned_cols=57 Identities=14% Similarity=0.320 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHhcCC-----CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 50 SVNDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 50 ~vte~~L~~~Fs~~G-----~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
.++..+|..++...+ .|-.|+|..+ |+||+-.. +.|.++++.|++..++|++++|+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 578888888887653 5778888765 88998754 488999999999999999999864
No 224
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=80.62 E-value=2.9 Score=34.18 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=44.7
Q ss_pred EEEEECCHHHHHHHHHhhCC-ceecCeeeEE--ccccccccc-ccccccccccceeccCCCCCCCHHHHHHHhc
Q 006316 171 GFVQFDNEESAKSAIDKLNG-MLLNDKQVFV--GPFLRKQER-ESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240 (650)
Q Consensus 171 afV~F~~~e~A~~Ai~~lng-~~i~g~~l~v--~~~~~~~~~-~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~ 240 (650)
|+|+|..+.-|.+.++.-.. ..+++.++.| .++...... -........+++.+.|||...++|+|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999974322 2345555444 333322211 1112233457799999999999999987544
No 225
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.81 E-value=6.6 Score=42.76 Aligned_cols=77 Identities=26% Similarity=0.239 Sum_probs=60.5
Q ss_pred cCCceeEEecCCCC-CCHHHHHHHHhhc----CCeEEEEEeeCCC-----------CC----------------------
Q 006316 319 FEGLNLYVKNLDDS-ISDDKLKELFSEF----GTITSCKVMRDPN-----------GI---------------------- 360 (650)
Q Consensus 319 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~i~~~~i~~~~~-----------g~---------------------- 360 (650)
..+.+|-|-|++|. +..+||.-+|+.| |.|.+|.|....- |.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45668999999985 5789999999876 6899999987542 11
Q ss_pred ---------------CcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 361 ---------------SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 361 ---------------s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
..-||.|+|.+.+.|.+......|..+......+.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 12379999999999999999999999975544433
No 226
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=72.53 E-value=96 Score=30.02 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=6.0
Q ss_pred cceEEEEcCCHHH
Q 006316 362 RGSGFVAFSTAEE 374 (650)
Q Consensus 362 ~g~~fV~f~~~~~ 374 (650)
.|.++-|+.-..+
T Consensus 48 pglsihcmqvhke 60 (341)
T KOG2893|consen 48 PGLSIHCMQVHKE 60 (341)
T ss_pred CCceeehhhhhhh
Confidence 3455555544433
No 227
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.43 E-value=31 Score=36.85 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=6.8
Q ss_pred EEcCCHHHHHHHHHHh
Q 006316 367 VAFSTAEEASKALTEM 382 (650)
Q Consensus 367 V~f~~~~~A~~A~~~l 382 (650)
+.|.+. ++++..+.+
T Consensus 319 ~dfSDD-EkEaeak~~ 333 (483)
T KOG2236|consen 319 QDFSDD-EKEAEAKQM 333 (483)
T ss_pred hccchH-HHHHHHHHH
Confidence 566654 333333334
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=66.44 E-value=23 Score=35.16 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=39.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCE-EEEEEEeeCCCCccccEEEEEecchhHH
Q 006316 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV-VSVRVCRDLSTRRSLGYGYVNYNAAHEA 94 (650)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V-~~i~v~~d~~t~~s~G~a~V~F~~~~~A 94 (650)
+.....-.+-|||+||+.++.-.||+.-+.+.+.+ .+|.- ....|-||+.|.+...+
T Consensus 323 ~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 323 SGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGV 380 (396)
T ss_pred CcccCccccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCC
Confidence 33333345679999999999999999999887632 23321 23446799999776543
No 229
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=66.24 E-value=4.8 Score=36.65 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=58.4
Q ss_pred cccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcccccccccccccccccccceeccCCCCC-CCHHHHHHHhcccCce
Q 006316 167 SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET-TTEDDLKKIFGEFGII 245 (650)
Q Consensus 167 skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~e~l~~~F~~~G~i 245 (650)
..++..+.|.+.+++.++++. ....+++..+.+....+.............--+.|.+||.. ++++-++.+.+.+|.+
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~ 132 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEP 132 (153)
T ss_pred CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCe
Confidence 457899999999999999863 44456777777766553322222222223345788899976 6888899999999998
Q ss_pred eEEEEE
Q 006316 246 TSTAVM 251 (650)
Q Consensus 246 ~~~~v~ 251 (650)
..+...
T Consensus 133 i~vD~~ 138 (153)
T PF14111_consen 133 IEVDEN 138 (153)
T ss_pred EEEEcC
Confidence 877654
No 230
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=60.37 E-value=7.5 Score=35.99 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=51.2
Q ss_pred ceeEEecCCCCCCH-----HHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCe-eEEEE
Q 006316 322 LNLYVKNLDDSISD-----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PLYVA 395 (650)
Q Consensus 322 ~~l~V~nl~~~~t~-----~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l~V~ 395 (650)
+.+.+.+++..+-. ....++|..|-+.....+++ +.++..|.|.+.+.|..|..+++...|.|+ .+..-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 34666777665532 33445566555444444443 344677899999999999999999999988 78877
Q ss_pred ecchh
Q 006316 396 LAQRK 400 (650)
Q Consensus 396 ~a~~~ 400 (650)
++++.
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 77654
No 231
>PHA03378 EBNA-3B; Provisional
Probab=59.40 E-value=2.3e+02 Score=32.08 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=13.5
Q ss_pred HHHHhhhcchhhhhccCCCC
Q 006316 566 QRTLLGENLYPLVDQLEHDN 585 (650)
Q Consensus 566 ~~~~~g~~l~~~~~~~~~~~ 585 (650)
-|+||-..|---|.+-.|.+
T Consensus 821 ~k~ilrqlltggvk~grps~ 840 (991)
T PHA03378 821 TKQILRQLLTGGVKRGRPSL 840 (991)
T ss_pred HHHHHHHHhhcccccCCccc
Confidence 47788777777776655544
No 232
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=57.81 E-value=4.3 Score=37.53 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=54.7
Q ss_pred CCEEEEcCCCCCCCH-----HHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCC-ccc
Q 006316 39 STSLYVGDLDLSVND-----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK-PIR 112 (650)
Q Consensus 39 ~~~L~V~nLp~~vte-----~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~-~i~ 112 (650)
..+|.+.+++..+-. .....+|.+|-+..-.++.| |++.--|+|.+++.|.+|.-.++...|.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 357888888876542 22345777776665555554 445678999999999999999999999998 887
Q ss_pred cccccc
Q 006316 113 IMYSYR 118 (650)
Q Consensus 113 v~~s~~ 118 (650)
..+.+.
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 777654
No 233
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=57.32 E-value=39 Score=27.42 Aligned_cols=58 Identities=16% Similarity=0.322 Sum_probs=45.7
Q ss_pred eeEEecCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh
Q 006316 323 NLYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l 382 (650)
+-|+-..+...+..+|++.++. || .|.+|..+.-..+ ..-|||++...++|.....++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 5677778899999999999988 66 6888877766533 346999999999988876654
No 234
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=56.51 E-value=65 Score=34.43 Aligned_cols=9 Identities=22% Similarity=0.349 Sum_probs=4.2
Q ss_pred CEEEEEEEe
Q 006316 65 QVVSVRVCR 73 (650)
Q Consensus 65 ~V~~i~v~~ 73 (650)
.+.+|.|+.
T Consensus 49 nlEsi~vv~ 57 (654)
T COG5180 49 NLESIDVVE 57 (654)
T ss_pred eeeeeeeee
Confidence 345554443
No 235
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=56.49 E-value=21 Score=35.08 Aligned_cols=104 Identities=23% Similarity=0.358 Sum_probs=59.6
Q ss_pred cccchHHHHhhhcccC---ceeEEEEeeCCCCCcccEEEEEECCHHHH----HHHHHhhCCceecCeeeEEccccc----
Q 006316 137 KSIDNKALHDTFSTFG---NILSCKVATDSLGQSRGYGFVQFDNEESA----KSAIDKLNGMLLNDKQVFVGPFLR---- 205 (650)
Q Consensus 137 ~~i~~~~L~~~Fs~~G---~I~~~~v~~d~~g~skg~afV~F~~~e~A----~~Ai~~lng~~i~g~~l~v~~~~~---- 205 (650)
.+|++.+|.+-+...- ...+|++.. ...-||.|+.+-.- .+.+..|+|. .+.++-+..
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckire------snid~iifeael~n~gimkk~l~~ldgf-----siklsgfad~lkv 115 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIRE------SNIDFIIFEAELENKGIMKKFLACLDGF-----SIKLSGFADILKV 115 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeecc------cccceEEeeHhhhhhhHHHHHHHHhcCC-----eeeecccchHHhh
Confidence 4677777777665332 245666643 23568888766443 3444455554 333322211
Q ss_pred ---------------------ccccccccccccccceeccCCCCCC------------CHHHHHHHhcccCceeEEEEE
Q 006316 206 ---------------------KQERESTADKTRFNNVYVKNLSETT------------TEDDLKKIFGEFGIITSTAVM 251 (650)
Q Consensus 206 ---------------------~~~~~~~~~~~~~~~l~V~nlp~~~------------t~e~l~~~F~~~G~i~~~~v~ 251 (650)
...-..........++++.+||..| +++.|+..|+.||.|..+.+.
T Consensus 116 ka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 116 KAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred hHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 0000011112334578888887655 567899999999999988764
No 236
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=54.46 E-value=50 Score=26.33 Aligned_cols=58 Identities=14% Similarity=0.296 Sum_probs=45.3
Q ss_pred eeEEecCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh
Q 006316 323 NLYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l 382 (650)
+-|+-.++...+..+|++.++. || .|.+|..+.-+.+ ..-|||++...+.|...-.++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 5788888999999999999988 66 6788877665432 346999999888888776544
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.38 E-value=45 Score=27.10 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=45.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-CC-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccc
Q 006316 41 SLYVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (650)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~Fs~-~G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~l 101 (650)
.-|+-.++.+.+..++++.++. || +|.+|+.+.-+.. .--|||.+....+|.....++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHhh
Confidence 3566667899999999988876 56 8899988876532 336999999999998876554
No 238
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=51.35 E-value=27 Score=34.64 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=35.5
Q ss_pred ceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCH
Q 006316 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178 (650)
Q Consensus 128 ~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~ 178 (650)
..|+++||+.++..++|+..+..-+.+. +...+.| ..|-||+||-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p---m~iswkg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP---MSISWKG-HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc---eeEeeec-CCcceeEecCCc
Confidence 3599999999999999999998887542 1222334 566799999875
No 239
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=49.80 E-value=36 Score=26.38 Aligned_cols=62 Identities=11% Similarity=0.264 Sum_probs=47.8
Q ss_pred HHHHHHHhcCC-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccccc
Q 006316 54 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (650)
Q Consensus 54 ~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~ 118 (650)
++|.+-|...| +|.+|.-.+...++..+---||+.....+...+ ++-..+.+..|.|.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 45677777777 899999998887888888899999888774443 355668899999886543
No 240
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=49.60 E-value=33 Score=26.59 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=48.3
Q ss_pred HHHHHHHhcCC-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 54 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 54 ~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
++|.+-|..+| +|..|+..+...++....--+|+.....+-.. -|+-..|+|++|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46778888888 89999999988888888888999888776655 345566899999887554
No 241
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.31 E-value=31 Score=26.05 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=17.9
Q ss_pred HHHHHHHhhcCCeEEEEEeeCC
Q 006316 336 DKLKELFSEFGTITSCKVMRDP 357 (650)
Q Consensus 336 ~~l~~~F~~~G~i~~~~i~~~~ 357 (650)
.+||++|+..|.|.-+.+-.-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999999888775443
No 242
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=46.25 E-value=36 Score=28.98 Aligned_cols=109 Identities=28% Similarity=0.352 Sum_probs=61.3
Q ss_pred CCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCc--cCCCCcccccccccCcccc
Q 006316 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLNGKPIRIMYSYRDPTIR 123 (650)
Q Consensus 46 nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~--~i~g~~i~v~~s~~~~~~~ 123 (650)
-||+-++ .|-+.|+.=|+|.+|..+.. |. .. .|+-.+++. .++|+ |+|-......+.+
T Consensus 10 VlPPYTn--KLSDYfeSPGKI~svItvtq-------------yp-dn---dal~~~~G~lE~vDg~-i~IGs~q~~~sV~ 69 (145)
T TIGR02542 10 VLPPYTN--KLSDYFESPGKIQSVITVTQ-------------YP-DN---DALLYVHGTLEQVDGN-IRIGSGQTPASVR 69 (145)
T ss_pred ecCCccc--hhhHHhcCCCceEEEEEEec-------------cC-Cc---hhhheeeeehhhccCc-EEEccCCCcccEE
Confidence 3666554 57899999999999876543 12 11 233334443 25666 6665433221111
Q ss_pred ----cCCCceeEecCCCcccchHHHHhhhcc---cCceeEEEEeeC--CCCCcccEEEEEECCH
Q 006316 124 ----KSGAGNIFIKNLDKSIDNKALHDTFST---FGNILSCKVATD--SLGQSRGYGFVQFDNE 178 (650)
Q Consensus 124 ----~~~~~~l~V~nLp~~i~~~~L~~~Fs~---~G~I~~~~v~~d--~~g~skg~afV~F~~~ 178 (650)
.++...+| -|..++..+|+++|+. |-.|..-.|.+| ..| +-..||.-|...
T Consensus 70 i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~ 129 (145)
T TIGR02542 70 IQGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNAT 129 (145)
T ss_pred EecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccc
Confidence 11111222 4678899999999974 444554445555 233 455788877654
No 243
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=46.07 E-value=16 Score=38.04 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=46.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEE-eeCCCCc-cccEEEEEecchhHHHHHcccccCccC
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVC-RDLSTRR-SLGYGYVNYNAAHEATRALDELNFTPL 106 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~-V~~i~v~-~d~~t~~-s~G~a~V~F~~~~~A~~Al~~ln~~~i 106 (650)
-..+.|..||+..++.+|.+....+-. |...... -+..... -.+.|||+|...+|.....+.+++.++
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 468999999999999999988877531 2222222 1111222 236899999999998888877776543
No 244
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.75 E-value=6.2e+02 Score=30.57 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 006316 613 AKVAEAMEVLRNVA 626 (650)
Q Consensus 613 ~~~~~a~~~l~~~~ 626 (650)
..++||+.+-..-.
T Consensus 1011 ~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 1011 RDYSEALQIHAQIA 1024 (1049)
T ss_pred ccHHHHHHHHHHHh
Confidence 45777777665443
No 245
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=44.32 E-value=27 Score=30.34 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=24.6
Q ss_pred cchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHH
Q 006316 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179 (650)
Q Consensus 139 i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e 179 (650)
.+.++|.+.|+.|..+. ++...+..| +.|+++|+|.+.-
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w 67 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDW 67 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCCh
Confidence 46789999999998764 555565554 7899999998864
No 246
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=43.80 E-value=82 Score=25.10 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=44.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-CC-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccc
Q 006316 41 SLYVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (650)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~Fs~-~G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~l 101 (650)
.-|+-.++.+.+..++++.++. || +|.+|+...-+. ..--|||.+...++|...-.++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 4677778899999999988876 45 788888877643 2336999999999988776543
No 247
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=40.41 E-value=32 Score=29.81 Aligned_cols=41 Identities=15% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHH
Q 006316 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94 (650)
Q Consensus 51 vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A 94 (650)
.+.++|.+.|+.|.++ .++++.+.. -+.|++.|.|.+.-..
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSG 69 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHH
Confidence 3568999999999986 577777643 6779999999776553
No 248
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=39.72 E-value=4.6e+02 Score=29.24 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=5.6
Q ss_pred HHHHhhhcchhhh
Q 006316 566 QRTLLGENLYPLV 578 (650)
Q Consensus 566 ~~~~~g~~l~~~~ 578 (650)
||.-.|+.--+.|
T Consensus 492 qk~~~~~~gep~~ 504 (757)
T KOG4368|consen 492 QKPHMRRQGEPHI 504 (757)
T ss_pred ccchhcccCCCcc
Confidence 4544444433333
No 249
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=39.51 E-value=65 Score=33.73 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=32.6
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhcC----CCEEEEEEEee
Q 006316 36 QFVSTSLYVGDLDL-SVNDSQLYDLFNQM----GQVVSVRVCRD 74 (650)
Q Consensus 36 ~~~~~~L~V~nLp~-~vte~~L~~~Fs~~----G~V~~i~v~~d 74 (650)
..++..|-|-||.| .+...+|+-+|+.| |++..|.||..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 45678999999999 58889999999987 67888888765
No 250
>PRK10905 cell division protein DamX; Validated
Probab=38.02 E-value=55 Score=33.43 Aligned_cols=60 Identities=17% Similarity=0.071 Sum_probs=38.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCc-cccEEEEEecchhHHHHHcccccC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNYNAAHEATRALDELNF 103 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~-s~G~a~V~F~~~~~A~~Al~~ln~ 103 (650)
-+|-|+.+ .+++.|.++-.++| +....+....+.|+ ..-.-|=.|.+.++|++|+.+|-.
T Consensus 248 YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 248 YTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred eEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 45555543 45688888888875 35556666544444 212223349999999999998854
No 251
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.00 E-value=43 Score=34.97 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=44.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT 104 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~-V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~ 104 (650)
...|-|.|.|...-.+||...|+.|+. =-.|.-+.| | +||-.|.+...|..|| .+.+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd--t-----halaVFss~~~AaeaL-t~kh~ 449 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD--T-----HALAVFSSVNRAAEAL-TLKHD 449 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec--c-----eeEEeecchHHHHHHh-hccCc
Confidence 368999999999989999999999963 223333333 2 7999999999999999 44443
No 252
>PRK11901 hypothetical protein; Reviewed
Probab=36.64 E-value=1.1e+02 Score=31.52 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=40.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccc-cEEEEEecchhHHHHHcccccCc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL-GYGYVNYNAAHEATRALDELNFT 104 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~-G~a~V~F~~~~~A~~Al~~ln~~ 104 (650)
.-+|-|.. .-.++.|..+.++++ +..++|.+..+.++.- -.-|=+|.+.++|.+|+..|-..
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 34454544 345888888888885 4667777765544321 12222499999999999988643
No 253
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.17 E-value=6.6 Score=42.49 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=52.7
Q ss_pred ceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecC
Q 006316 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (650)
Q Consensus 128 ~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g 195 (650)
+++|+.|+.++++..+|..+++.+-.++.+.+..+ .......+++|+|+..-.-..|+..||+..+..
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 56999999999999999999999988877766544 222345678999998877777777777765543
No 254
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.64 E-value=1e+02 Score=33.08 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=6.6
Q ss_pred eEEEEeCChhhH
Q 006316 261 FGFVNFDDPDDA 272 (650)
Q Consensus 261 ~afV~f~~~~~A 272 (650)
|-.|.|.+.+.+
T Consensus 261 ~YvvRFnS~~e~ 272 (483)
T KOG2236|consen 261 YYVVRFNSEEEI 272 (483)
T ss_pred eEEEecCchhhh
Confidence 445666665544
No 255
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=33.46 E-value=2.7e+02 Score=32.24 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=2.3
Q ss_pred EEeCCh
Q 006316 264 VNFDDP 269 (650)
Q Consensus 264 V~f~~~ 269 (650)
+.|.+.
T Consensus 297 ~r~~~~ 302 (756)
T KOG2375|consen 297 VRFENE 302 (756)
T ss_pred hhhhhh
Confidence 344333
No 256
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.12 E-value=78 Score=23.99 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=21.7
Q ss_pred HHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeC
Q 006316 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267 (650)
Q Consensus 233 e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~ 267 (650)
.+|+++|+..|.|.-+.+-.-.....+-.|=|.|+
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~eS~~~~~~GGvV~e 43 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYESDEDRLTGGVVME 43 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccccCCCeEeccEEEe
Confidence 57999999999988766644333333333333333
No 257
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=30.52 E-value=9 Score=41.53 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=53.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
..++|+|+|++++++-++|..+|+.+--+..+-...+...++-....||.|...-+-..|+..||+.-+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 46899999999999999999999998545555444443334444568999987777777776667655554443
No 258
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.86 E-value=1.1e+02 Score=32.14 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=45.4
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcCC-eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHH
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFGT-ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~ 381 (650)
..|-|-++|...--+||...|+.|++ =-+|+++.|. .+|-.|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc
Confidence 46889999999999999999999964 4566777663 799999999999999874
No 259
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.10 E-value=64 Score=31.89 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.2
Q ss_pred ceeEEecCCC------------CCCHHHHHHHHhhcCCeEEEEEeeC
Q 006316 322 LNLYVKNLDD------------SISDDKLKELFSEFGTITSCKVMRD 356 (650)
Q Consensus 322 ~~l~V~nl~~------------~~t~~~l~~~F~~~G~i~~~~i~~~ 356 (650)
-+||+-+||- --+++.|+..|..||.|..|.|...
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 4677777763 2467899999999999999988643
No 260
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=24.38 E-value=1.6e+02 Score=30.93 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=30.6
Q ss_pred ccCCceeEEecCCCC-CCHHHHHHHHhhc----CCeEEEEEeeCC
Q 006316 318 KFEGLNLYVKNLDDS-ISDDKLKELFSEF----GTITSCKVMRDP 357 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~i~~~~i~~~~ 357 (650)
...+.+|-|-|++|. +...+|...|+.| |.|..|.|....
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 345568999999974 6788999999865 678888887643
No 261
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=23.84 E-value=4.1e+02 Score=29.54 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=13.0
Q ss_pred ccchhhhc--cCCChHHHHHhcCChH
Q 006316 586 AAKVTGML--LEMDQTEVLHLLESPE 609 (650)
Q Consensus 586 a~kitgm~--l~~~~~~~~~~~~~~~ 609 (650)
|-|..+|+ +|-...-++.++.--+
T Consensus 373 a~~~~~v~~g~q~~q~~~~~~~sp~~ 398 (742)
T KOG4274|consen 373 AQAAQMVAPGVQVSQSSLPMLSSPSP 398 (742)
T ss_pred hhcceeeecccccccccccccCCCch
Confidence 55555555 5555555555555433
No 262
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.10 E-value=17 Score=38.25 Aligned_cols=81 Identities=10% Similarity=0.018 Sum_probs=63.2
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhH
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
..++..++...+++++.-+|..||.|.-+..-+.. .|...-.+||+-.+ .+|...|..+.-..+.|..++|+++...-
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 46778889999999999999999999888776554 34455567887765 46788888888888889999999987554
Q ss_pred HHH
Q 006316 402 ERR 404 (650)
Q Consensus 402 ~r~ 404 (650)
..+
T Consensus 84 ~~r 86 (572)
T KOG4365|consen 84 EKR 86 (572)
T ss_pred hhh
Confidence 433
No 263
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.33 E-value=66 Score=21.46 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHHhcCCC
Q 006316 49 LSVNDSQLYDLFNQMGQ 65 (650)
Q Consensus 49 ~~vte~~L~~~Fs~~G~ 65 (650)
.+++++.|++.|.+++.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46899999999998753
No 264
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=22.31 E-value=2.9e+02 Score=24.95 Aligned_cols=57 Identities=14% Similarity=0.345 Sum_probs=42.7
Q ss_pred eeEEecCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHH
Q 006316 323 NLYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~ 381 (650)
+-|+-.++...+..+|++.++. |+ .|.+|..+....|. .-|||++....+|....+.
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~--KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL--KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc--eEEEEEECCCCcHHHHHHh
Confidence 5777788889999999999987 66 57778776655442 3589999887776655443
No 265
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=22.30 E-value=7.7e+02 Score=27.70 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=9.3
Q ss_pred HHHHHHHhcccCceeEEEEEeC
Q 006316 232 EDDLKKIFGEFGIITSTAVMRD 253 (650)
Q Consensus 232 ~e~l~~~F~~~G~i~~~~v~~~ 253 (650)
-|.|+.+-.+-| ..|.++.|
T Consensus 249 GE~IKklq~etG--~KIQfkpD 268 (600)
T KOG1676|consen 249 GEMIKKLQNETG--AKIQFKPD 268 (600)
T ss_pred chHHHHHhhccC--ceeEeecC
Confidence 345555544444 23444444
No 266
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=22.24 E-value=3.2e+02 Score=21.17 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=31.5
Q ss_pred CHHHHHHHHhcCC-CEEEEEEEeeCCCCccccEEEEEec-chhHHHHHcccccC
Q 006316 52 NDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYN-AAHEATRALDELNF 103 (650)
Q Consensus 52 te~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~G~a~V~F~-~~~~A~~Al~~ln~ 103 (650)
.-.++.+.|+.+| .++.|.-... ......-+-||+|. ..++.++|++.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~-~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPS-RRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCC-CCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 4567778888887 6777654443 22333446678887 44455677776653
No 267
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=21.79 E-value=2.6e+02 Score=21.49 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=33.3
Q ss_pred CCHHHHHHHHhcCC-CEEEEEEEeeCCCCccccEEEEEecc---hhHHHHHccccc
Q 006316 51 VNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNA---AHEATRALDELN 102 (650)
Q Consensus 51 vte~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~G~a~V~F~~---~~~A~~Al~~ln 102 (650)
-.-.++.+.|+.+| .|.+|.-... ......-.-||++.. ....+.+++.|.
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Srp~-~~~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESRPS-RKGLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeeec-CCCCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 34678889999986 7888844433 333444567888874 455666776654
No 268
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.67 E-value=2.3e+02 Score=31.48 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=43.9
Q ss_pred HHHHHHHHh----hcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhH
Q 006316 335 DDKLKELFS----EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 335 ~~~l~~~F~----~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
.-+|..+|. .+|.|+++.+-..+.-..+...++.|.+.++|..++..+....+ .+..+.+.....
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~--~p~~~el~d~~~ 271 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGI--IPGGLEMMDNLS 271 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhcCC--CcEEEEeeCHHH
Confidence 346777765 57889998776555444556778999999999999988643222 244555555443
No 269
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=20.16 E-value=86 Score=29.18 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=45.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCC-CccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t-~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
+++|.. +.+..-++|.++-+ |.+..|..-+.... ..-+|-.||+|.+.+.|..++++ ........++..+|
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 444544 22223344444444 78888877665322 24568999999999999999976 44445556666666
Done!