Query 006316
Match_columns 650
No_of_seqs 463 out of 3104
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 21:45:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1E-42 3.6E-47 356.4 27.6 249 38-407 21-271 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-42 6E-47 356.2 24.9 252 34-400 36-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 5.3E-34 1.8E-38 278.7 16.4 175 35-210 11-185 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 9E-31 3.1E-35 244.9 17.5 163 40-203 1-164 (166)
5 1g9l_A Polyadenylate-binding p 100.0 1.2E-31 4.1E-36 231.8 10.5 80 550-629 50-129 (144)
6 4f02_A Polyadenylate-binding p 100.0 4.7E-30 1.6E-34 250.7 21.8 174 217-407 14-188 (213)
7 1l3k_A Heterogeneous nuclear r 100.0 3E-30 1E-34 248.6 18.5 173 36-210 10-187 (196)
8 1b7f_A Protein (SXL-lethal pro 100.0 2.8E-30 9.5E-35 242.3 17.8 163 38-202 2-167 (168)
9 2dyd_A Poly(A)-binding protein 100.0 1.5E-32 5.2E-37 215.2 1.7 77 551-627 7-83 (85)
10 1fxl_A Paraneoplastic encephal 100.0 4.4E-30 1.5E-34 240.5 18.4 163 38-202 1-166 (167)
11 2qfj_A FBP-interacting repress 100.0 3.9E-30 1.3E-34 251.8 17.4 170 38-207 27-206 (216)
12 1nmr_A Poly(A)-binding protein 100.0 3E-32 1E-36 213.5 1.1 78 549-626 6-83 (85)
13 1ifw_A Polyadenylate-binding p 100.0 1.9E-31 6.6E-36 212.2 5.1 79 551-629 5-85 (92)
14 3nmr_A Cugbp ELAV-like family 100.0 1.9E-29 6.6E-34 238.1 18.3 165 38-203 2-174 (175)
15 3kuj_A Polyadenylate-binding p 100.0 8.8E-31 3E-35 207.4 6.5 80 551-630 5-84 (88)
16 3md3_A Nuclear and cytoplasmic 100.0 4.9E-29 1.7E-33 233.1 18.9 165 219-399 1-166 (166)
17 2cjk_A Nuclear polyadenylated 100.0 6.6E-30 2.2E-34 239.5 12.4 164 38-206 2-166 (167)
18 2qfj_A FBP-interacting repress 100.0 2.4E-28 8.2E-33 239.0 20.5 177 217-400 27-205 (216)
19 1l3k_A Heterogeneous nuclear r 100.0 5E-28 1.7E-32 233.0 20.2 176 216-405 11-188 (196)
20 1fxl_A Paraneoplastic encephal 100.0 5.1E-28 1.7E-32 226.4 19.7 162 218-397 2-167 (167)
21 1b7f_A Protein (SXL-lethal pro 100.0 2.8E-28 9.5E-33 228.6 17.5 162 218-397 3-168 (168)
22 3nmr_A Cugbp ELAV-like family 100.0 5.8E-28 2E-32 227.9 18.9 164 218-398 3-175 (175)
23 1fje_B Nucleolin RBD12, protei 100.0 2.8E-29 9.5E-34 237.3 9.6 166 35-206 9-174 (175)
24 2g4b_A Splicing factor U2AF 65 100.0 5.7E-28 2E-32 227.4 16.9 158 37-203 2-171 (172)
25 3smz_A Protein raver-1, ribonu 100.0 7.7E-28 2.6E-32 245.9 18.7 172 38-209 94-267 (284)
26 2yh0_A Splicing factor U2AF 65 100.0 8E-28 2.7E-32 231.9 16.8 163 37-206 2-194 (198)
27 2cjk_A Nuclear polyadenylated 100.0 4.8E-28 1.6E-32 226.8 14.3 162 218-400 3-166 (167)
28 3tyt_A Heterogeneous nuclear r 100.0 5.8E-28 2E-32 233.5 14.3 153 38-196 3-193 (205)
29 3pgw_A U1-A; protein-RNA compl 99.9 2.1E-27 7E-32 242.5 18.4 161 36-203 6-280 (282)
30 1i2t_A HYD protein; four alpha 99.9 9.8E-29 3.4E-33 181.8 3.9 60 566-625 1-60 (61)
31 2adc_A Polypyrimidine tract-bi 99.9 5E-27 1.7E-31 231.8 16.5 161 36-205 31-227 (229)
32 3tyt_A Heterogeneous nuclear r 99.9 4.1E-27 1.4E-31 227.5 15.0 175 218-397 4-204 (205)
33 3pgw_A U1-A; protein-RNA compl 99.9 2.7E-26 9.3E-31 234.2 20.0 178 216-399 7-282 (282)
34 2ghp_A U4/U6 snRNA-associated 99.9 5.6E-27 1.9E-31 240.5 14.5 167 38-206 116-291 (292)
35 3sde_A Paraspeckle component 1 99.9 1.7E-26 5.8E-31 232.7 17.7 158 36-207 19-180 (261)
36 1fje_B Nucleolin RBD12, protei 99.9 3E-27 1E-31 223.3 10.7 164 216-400 11-174 (175)
37 2g4b_A Splicing factor U2AF 65 99.9 1.7E-26 5.6E-31 217.4 15.5 157 218-398 4-172 (172)
38 1qm9_A Polypyrimidine tract-bi 99.9 8.8E-27 3E-31 224.8 12.6 157 39-204 3-195 (198)
39 2yh0_A Splicing factor U2AF 65 99.9 6E-26 2E-30 218.8 13.3 178 218-401 4-195 (198)
40 3sde_A Paraspeckle component 1 99.9 2.5E-25 8.5E-30 224.1 17.9 157 216-401 20-180 (261)
41 2adc_A Polypyrimidine tract-bi 99.9 1.3E-25 4.4E-30 221.7 15.1 177 216-400 32-228 (229)
42 1qm9_A Polypyrimidine tract-bi 99.9 1.5E-25 5.2E-30 216.1 10.3 175 218-400 3-197 (198)
43 2kn4_A Immunoglobulin G-bindin 99.8 2.5E-20 8.5E-25 172.6 11.8 148 248-401 3-151 (158)
44 4f25_A Polyadenylate-binding p 99.8 2.1E-20 7.1E-25 163.1 8.2 103 39-143 5-113 (115)
45 2kn4_A Immunoglobulin G-bindin 99.8 1.5E-19 5.2E-24 167.3 11.8 138 68-207 2-151 (158)
46 4fxv_A ELAV-like protein 1; RN 99.8 1.4E-19 4.8E-24 153.1 9.1 82 36-117 16-97 (99)
47 4fxv_A ELAV-like protein 1; RN 99.8 3.9E-19 1.3E-23 150.3 11.4 83 317-399 15-98 (99)
48 4f25_A Polyadenylate-binding p 99.8 2.2E-19 7.5E-24 156.6 9.4 108 126-234 4-113 (115)
49 2i2y_A Fusion protein consists 99.8 2E-19 6.7E-24 165.0 8.7 137 257-400 11-148 (150)
50 3s8s_A Histone-lysine N-methyl 99.8 4.3E-18 1.5E-22 146.7 12.3 88 319-406 4-92 (110)
51 2i2y_A Fusion protein consists 99.8 1.4E-18 4.9E-23 159.2 9.7 125 77-206 9-148 (150)
52 3s8s_A Histone-lysine N-methyl 99.7 3E-18 1E-22 147.8 9.1 83 37-119 4-86 (110)
53 1x5u_A Splicing factor 3B subu 99.7 1.1E-17 3.8E-22 143.3 11.4 89 35-123 11-99 (105)
54 2lkz_A RNA-binding protein 5; 99.7 1.6E-18 5.5E-23 144.8 5.7 83 36-118 6-94 (95)
55 2lxi_A RNA-binding protein 10; 99.7 9.8E-19 3.4E-23 145.5 4.1 83 39-121 1-85 (91)
56 1x5s_A Cold-inducible RNA-bind 99.7 7.9E-18 2.7E-22 143.4 9.7 89 34-122 7-95 (102)
57 2dnz_A Probable RNA-binding pr 99.7 1.4E-17 4.8E-22 139.9 11.0 85 37-121 3-87 (95)
58 2e5h_A Zinc finger CCHC-type a 99.7 6.8E-18 2.3E-22 141.5 8.9 86 32-117 9-94 (94)
59 2dgs_A DAZ-associated protein 99.7 1.6E-17 5.6E-22 140.6 11.4 87 35-122 6-92 (99)
60 3n9u_C Cleavage and polyadenyl 99.7 4.3E-18 1.5E-22 156.3 8.3 81 38-118 54-136 (156)
61 2khc_A Testis-specific RNP-typ 99.7 1.5E-17 5.2E-22 145.7 11.4 84 34-117 35-118 (118)
62 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.6E-18 2.3E-22 139.3 8.1 83 37-119 4-86 (87)
63 2cqc_A Arginine/serine-rich sp 99.7 1.1E-17 3.9E-22 140.4 9.5 87 32-118 8-94 (95)
64 2div_A TRNA selenocysteine ass 99.7 1.2E-17 4E-22 141.5 9.5 86 34-119 4-94 (99)
65 1whw_A Hypothetical protein ri 99.7 1.6E-17 5.3E-22 140.8 10.1 87 36-122 5-91 (99)
66 3lqv_A PRE-mRNA branch site pr 99.7 9E-18 3.1E-22 146.5 8.7 105 36-153 5-109 (115)
67 2dgo_A Cytotoxic granule-assoc 99.7 2.3E-17 7.8E-22 143.9 11.2 89 35-123 11-99 (115)
68 2dnm_A SRP46 splicing factor; 99.7 2E-17 6.8E-22 141.2 10.5 86 35-120 9-94 (103)
69 2cq0_A Eukaryotic translation 99.7 1.6E-17 5.4E-22 141.8 9.9 88 34-121 10-97 (103)
70 1u6f_A Tcubp1, RNA-binding pro 99.7 5.3E-17 1.8E-21 146.7 13.6 87 35-121 38-124 (139)
71 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.1E-17 3.7E-22 137.4 8.2 82 36-117 4-85 (85)
72 3md1_A Nuclear and cytoplasmic 99.7 1.7E-17 5.7E-22 135.6 8.6 81 39-119 1-81 (83)
73 2jrs_A RNA-binding protein 39; 99.7 3.9E-17 1.3E-21 140.5 11.1 83 37-119 24-106 (108)
74 2cpz_A CUG triplet repeat RNA- 99.7 2.5E-17 8.6E-22 143.6 10.0 85 37-121 23-107 (115)
75 2kxn_B Transformer-2 protein h 99.7 2.4E-17 8.2E-22 146.5 10.0 87 33-119 40-126 (129)
76 1p27_B RNA-binding protein 8A; 99.7 2.5E-17 8.5E-22 141.4 9.8 85 35-119 19-103 (106)
77 3p5t_L Cleavage and polyadenyl 99.7 8.5E-18 2.9E-22 139.6 6.4 82 40-121 2-85 (90)
78 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4E-22 142.4 7.3 88 34-121 7-94 (102)
79 2ywk_A Putative RNA-binding pr 99.7 2.1E-17 7E-22 138.8 8.7 83 34-117 11-93 (95)
80 2dh8_A DAZ-associated protein 99.7 4.1E-17 1.4E-21 139.8 10.7 89 33-122 10-98 (105)
81 2x1f_A MRNA 3'-END-processing 99.7 1.8E-17 6E-22 139.5 8.3 83 38-120 1-83 (96)
82 2cph_A RNA binding motif prote 99.7 4.4E-17 1.5E-21 140.1 10.9 87 36-122 12-100 (107)
83 2cqd_A RNA-binding region cont 99.7 5.2E-17 1.8E-21 141.8 11.5 87 33-120 11-97 (116)
84 2lxi_A RNA-binding protein 10; 99.7 1E-17 3.5E-22 139.3 6.6 80 322-401 2-84 (91)
85 2dnh_A Bruno-like 5, RNA bindi 99.7 6.9E-17 2.4E-21 138.3 11.9 85 36-121 12-99 (105)
86 2d9p_A Polyadenylate-binding p 99.7 5E-17 1.7E-21 138.7 10.9 87 33-121 9-95 (103)
87 1x5t_A Splicing factor 3B subu 99.7 1.7E-17 5.7E-22 139.7 7.9 85 37-121 3-88 (96)
88 2la6_A RNA-binding protein FUS 99.7 4E-17 1.4E-21 138.2 10.2 81 37-117 11-99 (99)
89 2wbr_A GW182, gawky, LD47780P; 99.7 6.2E-17 2.1E-21 130.0 10.6 77 320-401 6-82 (89)
90 2dng_A Eukaryotic translation 99.7 6.9E-17 2.4E-21 137.8 11.6 86 34-121 10-95 (103)
91 2do4_A Squamous cell carcinoma 99.7 5.1E-17 1.8E-21 137.8 10.8 85 35-120 13-97 (100)
92 2dhg_A TRNA selenocysteine ass 99.7 6E-17 2E-21 138.5 11.2 86 35-121 5-92 (104)
93 1x4e_A RNA binding motif, sing 99.7 1.6E-17 5.5E-22 136.4 7.1 81 37-117 3-83 (85)
94 2cpf_A RNA binding motif prote 99.7 3.1E-17 1.1E-21 138.6 9.0 85 37-121 3-90 (98)
95 3md1_A Nuclear and cytoplasmic 99.7 7E-17 2.4E-21 131.9 10.7 81 321-401 1-82 (83)
96 2lkz_A RNA-binding protein 5; 99.7 1.8E-17 6.1E-22 138.5 7.1 80 320-399 8-94 (95)
97 1x4h_A RNA-binding protein 28; 99.7 6.5E-17 2.2E-21 140.0 10.8 86 36-121 12-103 (111)
98 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-16 3.8E-21 132.0 11.0 81 320-400 5-86 (87)
99 1wi8_A EIF-4B, eukaryotic tran 99.7 7.4E-17 2.5E-21 137.9 10.2 86 35-122 11-97 (104)
100 2dgp_A Bruno-like 4, RNA bindi 99.7 5.3E-17 1.8E-21 139.3 9.2 86 36-121 10-98 (106)
101 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.7E-17 3E-21 137.2 10.4 86 35-122 11-96 (103)
102 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7E-17 2.4E-21 150.3 10.5 139 264-404 11-156 (165)
103 2dgv_A HnRNP M, heterogeneous 99.7 1.2E-16 4E-21 133.3 10.6 82 37-120 6-87 (92)
104 1oo0_B CG8781-PA, drosophila Y 99.7 4.1E-17 1.4E-21 141.0 8.1 86 35-120 22-107 (110)
105 2hvz_A Splicing factor, argini 99.7 3.1E-17 1.1E-21 139.4 7.2 92 40-136 1-100 (101)
106 3q2s_C Cleavage and polyadenyl 99.7 4.7E-17 1.6E-21 159.4 9.3 86 320-405 67-155 (229)
107 3s7r_A Heterogeneous nuclear r 99.7 7.4E-17 2.5E-21 133.0 9.1 80 36-116 8-87 (87)
108 2fy1_A RNA-binding motif prote 99.7 9.4E-17 3.2E-21 140.0 10.2 83 37-120 5-87 (116)
109 1s79_A Lupus LA protein; RRM, 99.7 7.5E-17 2.6E-21 137.1 9.2 80 37-118 9-88 (103)
110 3ns6_A Eukaryotic translation 99.7 3.2E-17 1.1E-21 139.0 6.8 81 38-118 5-92 (100)
111 2do4_A Squamous cell carcinoma 99.7 1.5E-16 5.2E-21 134.9 10.9 83 319-401 15-97 (100)
112 1sjq_A Polypyrimidine tract-bi 99.7 7.5E-17 2.6E-21 136.1 8.6 80 37-122 14-95 (105)
113 3ucg_A Polyadenylate-binding p 99.7 9.5E-17 3.2E-21 133.0 9.1 81 38-119 5-85 (89)
114 2x1f_A MRNA 3'-END-processing 99.7 1.8E-16 6E-21 133.4 10.9 82 321-402 2-84 (96)
115 3ns6_A Eukaryotic translation 99.7 5.5E-17 1.9E-21 137.5 7.7 84 320-403 5-96 (100)
116 3p5t_L Cleavage and polyadenyl 99.7 4.2E-17 1.4E-21 135.5 6.7 80 322-401 2-84 (90)
117 1sjq_A Polypyrimidine tract-bi 99.7 7.5E-17 2.6E-21 136.1 8.3 80 318-402 13-94 (105)
118 1whw_A Hypothetical protein ri 99.7 1.2E-16 4.2E-21 135.2 9.6 84 319-402 6-90 (99)
119 3r27_A HnRNP L, heterogeneous 99.7 1.3E-16 4.4E-21 133.3 9.4 80 317-401 17-98 (100)
120 2wbr_A GW182, gawky, LD47780P; 99.7 5.6E-17 1.9E-21 130.3 6.9 73 38-116 6-78 (89)
121 2cq3_A RNA-binding protein 9; 99.7 2.3E-16 7.9E-21 134.5 11.2 86 34-121 10-95 (103)
122 2rs2_A Musashi-1, RNA-binding 99.7 6.8E-17 2.3E-21 139.2 7.8 84 37-121 23-106 (109)
123 1wez_A HnRNP H', FTP-3, hetero 99.7 1.6E-16 5.6E-21 134.9 10.1 85 33-120 9-93 (102)
124 2ywk_A Putative RNA-binding pr 99.7 1.9E-16 6.7E-21 132.8 10.4 81 319-399 14-94 (95)
125 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.9E-16 6.6E-21 129.9 10.2 80 319-398 5-85 (85)
126 2mss_A Protein (musashi1); RNA 99.7 5.6E-17 1.9E-21 129.7 6.6 75 41-116 1-75 (75)
127 2m2b_A RNA-binding protein 10; 99.7 8.3E-17 2.8E-21 143.7 8.4 82 37-119 21-108 (131)
128 2cqg_A TDP-43, TAR DNA-binding 99.7 2.3E-16 7.9E-21 134.5 10.8 86 35-122 11-96 (103)
129 2dnh_A Bruno-like 5, RNA bindi 99.7 9.5E-17 3.3E-21 137.5 8.4 84 319-402 13-99 (105)
130 1p1t_A Cleavage stimulation fa 99.7 5.5E-17 1.9E-21 138.7 6.9 84 37-120 6-89 (104)
131 1s79_A Lupus LA protein; RRM, 99.7 1.7E-16 5.7E-21 135.0 9.8 84 320-404 10-93 (103)
132 3r27_A HnRNP L, heterogeneous 99.7 9.6E-17 3.3E-21 134.0 8.0 82 32-119 14-97 (100)
133 2dnz_A Probable RNA-binding pr 99.7 2.4E-16 8.3E-21 132.2 10.6 82 320-401 4-86 (95)
134 2cqp_A RNA-binding protein 12; 99.7 6.3E-17 2.2E-21 136.7 7.0 83 37-119 13-95 (98)
135 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.4E-17 1.9E-21 137.6 6.6 81 37-119 17-98 (100)
136 2d9p_A Polyadenylate-binding p 99.7 7.8E-17 2.7E-21 137.5 7.6 85 317-402 11-95 (103)
137 3ulh_A THO complex subunit 4; 99.7 1.2E-16 4.3E-21 137.2 8.8 82 35-117 25-106 (107)
138 2do0_A HnRNP M, heterogeneous 99.7 2.7E-16 9.1E-21 136.8 11.0 85 34-119 10-94 (114)
139 2cpe_A RNA-binding protein EWS 99.7 1.3E-16 4.5E-21 138.5 9.0 86 36-121 12-105 (113)
140 2fy1_A RNA-binding motif prote 99.7 1.9E-16 6.6E-21 138.0 9.9 83 319-401 5-87 (116)
141 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.8E-17 2E-21 130.3 6.1 76 40-116 1-76 (77)
142 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.7E-16 5.7E-21 143.5 9.8 86 31-116 55-140 (140)
143 4a8x_A RNA-binding protein wit 99.7 8.9E-17 3E-21 132.8 7.3 82 38-119 3-85 (88)
144 2do0_A HnRNP M, heterogeneous 99.7 2.5E-16 8.5E-21 137.0 10.5 82 319-400 13-94 (114)
145 2err_A Ataxin-2-binding protei 99.7 8.4E-17 2.9E-21 138.7 7.4 83 35-119 25-107 (109)
146 3n9u_C Cleavage and polyadenyl 99.7 3.2E-16 1.1E-20 143.8 11.7 85 320-404 54-141 (156)
147 3ex7_B RNA-binding protein 8A; 99.7 1.5E-16 5.1E-21 141.1 9.2 87 35-121 18-104 (126)
148 1x4a_A Splicing factor, argini 99.7 4E-16 1.4E-20 134.5 11.6 84 35-121 18-101 (109)
149 2e5h_A Zinc finger CCHC-type a 99.7 3.7E-16 1.3E-20 130.8 11.0 80 319-398 14-94 (94)
150 1wex_A Hypothetical protein (r 99.7 3.3E-16 1.1E-20 133.1 10.7 81 35-121 11-93 (104)
151 2cpz_A CUG triplet repeat RNA- 99.7 2.4E-16 8.3E-21 137.3 10.1 83 319-401 23-106 (115)
152 1x4b_A Heterogeneous nuclear r 99.7 1.8E-16 6.3E-21 138.3 9.2 85 37-122 25-109 (116)
153 2dgo_A Cytotoxic granule-assoc 99.7 3.1E-16 1.1E-20 136.6 10.7 84 318-401 12-96 (115)
154 1x4d_A Matrin 3; structural ge 99.7 1.1E-16 3.8E-21 135.0 7.5 85 32-122 8-95 (102)
155 3ulh_A THO complex subunit 4; 99.7 4.1E-16 1.4E-20 134.0 11.0 81 318-398 26-106 (107)
156 1wg5_A Heterogeneous nuclear r 99.7 3.9E-16 1.3E-20 133.3 10.8 82 36-119 12-94 (104)
157 2cq0_A Eukaryotic translation 99.7 2.6E-16 8.9E-21 134.2 9.7 84 318-401 12-96 (103)
158 2cq4_A RNA binding motif prote 99.7 1.4E-16 4.8E-21 138.6 8.0 82 37-119 23-104 (114)
159 2cqc_A Arginine/serine-rich sp 99.7 4.4E-16 1.5E-20 130.6 10.8 81 319-399 13-94 (95)
160 1oo0_B CG8781-PA, drosophila Y 99.7 2.3E-16 7.9E-21 136.3 9.3 84 318-401 23-107 (110)
161 2ek1_A RNA-binding protein 12; 99.7 5.1E-17 1.7E-21 136.4 4.8 80 38-117 14-93 (95)
162 2dgx_A KIAA0430 protein; RRM d 99.7 4.3E-16 1.5E-20 131.0 10.5 80 319-400 7-90 (96)
163 1x5t_A Splicing factor 3B subu 99.7 2.3E-16 8E-21 132.6 8.9 82 320-401 4-87 (96)
164 2dis_A Unnamed protein product 99.7 3E-16 1E-20 135.3 9.7 86 36-121 5-94 (109)
165 2cq3_A RNA-binding protein 9; 99.7 6.5E-16 2.2E-20 131.7 11.7 83 318-401 12-94 (103)
166 2jwn_A Embryonic polyadenylate 99.7 5E-16 1.7E-20 137.3 11.2 81 38-119 35-115 (124)
167 2dgs_A DAZ-associated protein 99.6 4.5E-16 1.5E-20 131.7 10.4 82 319-401 8-90 (99)
168 2dgx_A KIAA0430 protein; RRM d 99.6 1.5E-16 5.3E-21 133.7 7.5 81 36-119 6-90 (96)
169 2db1_A Heterogeneous nuclear r 99.6 4.3E-16 1.5E-20 136.2 10.6 86 319-405 15-103 (118)
170 2dgw_A Probable RNA-binding pr 99.6 2.7E-16 9.1E-21 130.9 8.9 83 35-120 6-88 (91)
171 2kt5_A RNA and export factor-b 99.6 2.7E-16 9.3E-21 139.0 9.4 85 35-120 31-115 (124)
172 2la6_A RNA-binding protein FUS 99.6 4.1E-16 1.4E-20 132.0 10.0 80 319-398 11-99 (99)
173 1p27_B RNA-binding protein 8A; 99.6 4.4E-16 1.5E-20 133.5 10.4 83 318-400 20-103 (106)
174 1x5u_A Splicing factor 3B subu 99.6 3.9E-16 1.3E-20 133.6 10.0 84 318-401 12-96 (105)
175 2lea_A Serine/arginine-rich sp 99.6 1.4E-16 4.7E-21 142.8 7.2 87 35-121 43-129 (135)
176 2dhg_A TRNA selenocysteine ass 99.6 1.4E-16 4.6E-21 136.2 6.8 83 319-401 7-91 (104)
177 2cq1_A PTB-like protein L; RRM 99.6 4.5E-16 1.5E-20 131.5 9.9 83 33-121 9-93 (101)
178 2ki2_A SS-DNA binding protein 99.6 6.5E-17 2.2E-21 134.3 4.5 80 40-120 2-81 (90)
179 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.2E-16 1.1E-20 133.4 8.9 83 319-401 10-93 (102)
180 2cpy_A RNA-binding protein 12; 99.6 5.2E-16 1.8E-20 134.9 10.4 87 319-406 13-100 (114)
181 2cqi_A Nucleolysin TIAR; RNA r 99.6 8.5E-16 2.9E-20 131.0 11.6 83 318-401 12-94 (103)
182 1p1t_A Cleavage stimulation fa 99.6 3.5E-16 1.2E-20 133.6 9.0 86 321-406 8-94 (104)
183 2cph_A RNA binding motif prote 99.6 5.2E-16 1.8E-20 133.3 10.1 84 318-401 12-98 (107)
184 2cpy_A RNA-binding protein 12; 99.6 2E-16 6.8E-21 137.5 7.5 83 35-119 11-94 (114)
185 2cpf_A RNA binding motif prote 99.6 4.4E-16 1.5E-20 131.5 9.4 82 320-401 4-89 (98)
186 1x5s_A Cold-inducible RNA-bind 99.6 3.8E-16 1.3E-20 132.9 9.0 83 319-401 10-93 (102)
187 2ad9_A Polypyrimidine tract-bi 99.6 4.8E-16 1.6E-20 134.6 9.5 84 33-122 25-110 (119)
188 2krb_A Eukaryotic translation 99.6 3.8E-16 1.3E-20 126.8 8.2 74 39-114 1-81 (81)
189 2hgl_A HNRPF protein, heteroge 99.6 3.3E-16 1.1E-20 139.8 8.5 86 319-405 42-130 (136)
190 2a3j_A U1 small nuclear ribonu 99.6 3.4E-16 1.2E-20 138.0 8.5 82 37-121 27-112 (127)
191 2jrs_A RNA-binding protein 39; 99.6 4.7E-16 1.6E-20 133.7 9.2 83 318-400 23-106 (108)
192 2cq4_A RNA binding motif prote 99.6 6.2E-16 2.1E-20 134.5 10.0 83 321-404 25-108 (114)
193 2khc_A Testis-specific RNP-typ 99.6 4.2E-16 1.4E-20 136.4 9.0 81 318-398 37-118 (118)
194 2dnm_A SRP46 splicing factor; 99.6 4E-16 1.4E-20 133.1 8.5 83 319-401 11-94 (103)
195 2err_A Ataxin-2-binding protei 99.6 4.9E-16 1.7E-20 133.9 9.2 82 318-400 26-107 (109)
196 2dnn_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 131.0 11.0 83 321-405 16-98 (109)
197 1h2v_Z 20 kDa nuclear CAP bind 99.6 5.8E-16 2E-20 142.7 9.9 86 36-121 36-121 (156)
198 3ucg_A Polyadenylate-binding p 99.6 1E-15 3.5E-20 126.6 10.5 79 321-400 6-85 (89)
199 2cpi_A CCR4-NOT transcription 99.6 3.4E-16 1.2E-20 135.4 7.7 88 33-120 9-102 (111)
200 1x4h_A RNA-binding protein 28; 99.6 9.1E-16 3.1E-20 132.7 10.4 83 319-401 13-102 (111)
201 2dgv_A HnRNP M, heterogeneous 99.6 6.7E-16 2.3E-20 128.7 9.1 82 319-401 6-87 (92)
202 4a8x_A RNA-binding protein wit 99.6 3.3E-16 1.1E-20 129.4 7.1 81 320-400 3-85 (88)
203 2dnq_A RNA-binding protein 4B; 99.6 1.2E-15 4.1E-20 126.6 10.5 78 36-121 5-82 (90)
204 2kxn_B Transformer-2 protein h 99.6 3.2E-16 1.1E-20 139.2 7.5 84 318-401 43-127 (129)
205 2cq1_A PTB-like protein L; RRM 99.6 6.7E-16 2.3E-20 130.4 9.0 79 318-401 12-92 (101)
206 2db1_A Heterogeneous nuclear r 99.6 3.4E-16 1.2E-20 136.9 7.5 82 36-119 14-98 (118)
207 2a3j_A U1 small nuclear ribonu 99.6 7.6E-16 2.6E-20 135.8 9.7 86 318-405 26-115 (127)
208 2kt5_A RNA and export factor-b 99.6 9.1E-16 3.1E-20 135.6 10.2 82 319-400 33-114 (124)
209 2lmi_A GRSF-1, G-rich sequence 99.6 3.3E-16 1.1E-20 134.5 7.0 86 319-405 9-97 (107)
210 1x4d_A Matrin 3; structural ge 99.6 3.1E-16 1.1E-20 132.3 6.7 77 319-400 13-92 (102)
211 3s7r_A Heterogeneous nuclear r 99.6 1.5E-15 5.2E-20 125.1 10.8 79 318-397 8-87 (87)
212 2ad9_A Polypyrimidine tract-bi 99.6 6.1E-16 2.1E-20 133.9 8.6 80 318-402 28-109 (119)
213 2div_A TRNA selenocysteine ass 99.6 7.8E-16 2.7E-20 130.2 9.1 82 319-400 7-94 (99)
214 2dgp_A Bruno-like 4, RNA bindi 99.6 6.6E-16 2.3E-20 132.4 8.7 84 318-401 10-97 (106)
215 2fc9_A NCL protein; structure 99.6 6.4E-16 2.2E-20 131.2 8.5 83 35-121 11-93 (101)
216 2cpe_A RNA-binding protein EWS 99.6 8.3E-16 2.8E-20 133.5 9.3 84 318-401 12-104 (113)
217 2dgw_A Probable RNA-binding pr 99.6 1.2E-15 4.1E-20 126.9 9.9 80 319-400 8-87 (91)
218 2fc8_A NCL protein; structure 99.6 7.2E-16 2.5E-20 131.2 8.8 85 34-121 10-94 (102)
219 3q2s_C Cleavage and polyadenyl 99.6 6.2E-16 2.1E-20 151.5 9.4 81 38-118 67-149 (229)
220 2dha_A FLJ20171 protein; RRM d 99.6 6E-16 2.1E-20 135.5 8.3 88 318-406 20-111 (123)
221 2nlw_A Eukaryotic translation 99.6 8.7E-16 3E-20 131.4 9.1 81 37-119 13-100 (105)
222 1x5o_A RNA binding motif, sing 99.6 2.2E-15 7.7E-20 130.9 11.9 81 36-117 22-110 (114)
223 1wi8_A EIF-4B, eukaryotic tran 99.6 9.5E-16 3.3E-20 130.9 9.4 82 318-401 12-95 (104)
224 2cpj_A Non-POU domain-containi 99.6 1.2E-15 4E-20 129.1 9.8 81 35-121 11-91 (99)
225 2cpi_A CCR4-NOT transcription 99.6 8.7E-16 3E-20 132.8 9.0 84 318-401 12-102 (111)
226 1wel_A RNA-binding protein 12; 99.6 6.5E-16 2.2E-20 136.5 8.3 84 35-119 21-104 (124)
227 1rk8_A CG8781-PA, CG8781-PA pr 99.6 7E-16 2.4E-20 143.5 8.9 87 35-121 68-154 (165)
228 1iqt_A AUF1, heterogeneous nuc 99.6 2.8E-16 9.7E-21 125.5 5.2 75 41-116 1-75 (75)
229 2lea_A Serine/arginine-rich sp 99.6 4E-16 1.4E-20 139.8 6.7 122 83-207 6-128 (135)
230 2dng_A Eukaryotic translation 99.6 1.6E-15 5.4E-20 129.3 10.1 82 318-401 12-94 (103)
231 2mss_A Protein (musashi1); RNA 99.6 6.1E-16 2.1E-20 123.6 7.0 74 323-397 1-75 (75)
232 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.4E-16 1.5E-20 132.0 6.5 80 319-400 17-98 (100)
233 1x4a_A Splicing factor, argini 99.6 2.1E-15 7.3E-20 129.9 10.9 81 318-400 19-99 (109)
234 1x4c_A Splicing factor, argini 99.6 1.4E-15 4.9E-20 130.7 9.8 79 36-121 12-95 (108)
235 1why_A Hypothetical protein ri 99.6 1.7E-15 5.7E-20 127.6 9.9 80 35-120 13-94 (97)
236 1u6f_A Tcubp1, RNA-binding pro 99.6 1.3E-15 4.3E-20 137.6 9.8 83 319-401 40-123 (139)
237 2cqd_A RNA-binding region cont 99.6 1.8E-15 6.1E-20 132.0 10.3 82 318-400 14-96 (116)
238 2lmi_A GRSF-1, G-rich sequence 99.6 4.8E-16 1.6E-20 133.5 6.6 81 36-118 8-91 (107)
239 1wg5_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 130.7 8.3 82 319-401 13-95 (104)
240 1x5o_A RNA binding motif, sing 99.6 1.6E-15 5.3E-20 131.9 9.6 82 319-400 23-112 (114)
241 2ytc_A PRE-mRNA-splicing facto 99.6 1.6E-15 5.6E-20 124.3 9.3 76 36-117 9-85 (85)
242 2hgl_A HNRPF protein, heteroge 99.6 6.3E-16 2.2E-20 137.9 7.3 81 36-118 41-124 (136)
243 3ex7_B RNA-binding protein 8A; 99.6 1.5E-15 5.3E-20 134.5 9.7 84 318-401 19-103 (126)
244 3pgw_S U1-70K; protein-RNA com 99.6 3.5E-16 1.2E-20 167.6 6.5 156 46-206 4-182 (437)
245 2krb_A Eukaryotic translation 99.6 5E-16 1.7E-20 126.1 5.9 74 321-395 1-81 (81)
246 2jvr_A Nucleolar protein 3; RN 99.6 1.4E-15 4.8E-20 130.6 9.0 78 320-400 27-105 (111)
247 2ek1_A RNA-binding protein 12; 99.6 7.4E-16 2.5E-20 129.2 7.1 80 320-399 14-94 (95)
248 2cqp_A RNA-binding protein 12; 99.6 7.4E-16 2.5E-20 130.1 7.1 82 319-400 13-95 (98)
249 2rs2_A Musashi-1, RNA-binding 99.6 2.2E-15 7.6E-20 129.7 10.1 82 319-401 23-105 (109)
250 2jvr_A Nucleolar protein 3; RN 99.6 4.7E-16 1.6E-20 133.6 5.8 81 38-122 27-108 (111)
251 1fj7_A Nucleolin RBD1, protein 99.6 2.3E-16 7.8E-21 134.1 3.8 82 37-120 15-96 (101)
252 3pgw_S U1-70K; protein-RNA com 99.6 3E-16 1E-20 168.2 5.3 83 319-401 100-183 (437)
253 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.5E-15 5E-20 140.0 9.3 83 319-401 37-120 (156)
254 2dnn_A RNA-binding protein 12; 99.6 7.6E-16 2.6E-20 132.0 6.8 79 37-118 14-92 (109)
255 2nlw_A Eukaryotic translation 99.6 9.3E-16 3.2E-20 131.2 7.4 80 320-400 14-100 (105)
256 1wex_A Hypothetical protein (r 99.6 1.4E-15 4.7E-20 129.3 8.4 78 319-401 13-92 (104)
257 2m2b_A RNA-binding protein 10; 99.6 4.4E-16 1.5E-20 139.0 5.4 82 319-401 21-109 (131)
258 1x4e_A RNA binding motif, sing 99.6 4.8E-16 1.7E-20 127.5 5.2 79 320-398 4-83 (85)
259 2dnp_A RNA-binding protein 14; 99.6 1.3E-15 4.4E-20 126.4 7.8 79 35-121 5-83 (90)
260 1wez_A HnRNP H', FTP-3, hetero 99.6 8.4E-16 2.9E-20 130.5 6.5 81 319-401 13-93 (102)
261 2e5j_A Methenyltetrahydrofolat 99.6 2.8E-15 9.7E-20 126.2 9.8 79 36-119 16-94 (97)
262 2cpx_A Hypothetical protein FL 99.6 8E-16 2.8E-20 134.0 6.5 86 36-121 22-107 (115)
263 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1E-15 3.5E-20 123.0 6.6 75 322-397 1-76 (77)
264 1x4g_A Nucleolysin TIAR; struc 99.6 1.8E-15 6.2E-20 130.3 8.4 81 37-123 23-103 (109)
265 2dh8_A DAZ-associated protein 99.6 1.3E-15 4.4E-20 130.3 7.4 83 318-401 13-96 (105)
266 2diu_A KIAA0430 protein; struc 99.6 3.6E-15 1.2E-19 120.8 9.5 76 38-123 7-88 (96)
267 2jvo_A Nucleolar protein 3; nu 99.6 1.6E-15 5.3E-20 130.4 7.8 77 36-120 28-104 (108)
268 2fc9_A NCL protein; structure 99.6 2.9E-15 9.8E-20 127.2 9.4 79 319-400 13-91 (101)
269 2ki2_A SS-DNA binding protein 99.6 5.6E-16 1.9E-20 128.6 4.8 79 322-401 2-81 (90)
270 2la4_A Nuclear and cytoplasmic 99.6 1.9E-15 6.3E-20 128.4 8.1 75 38-118 26-100 (101)
271 2hgm_A HNRPF protein, heteroge 99.6 2.3E-15 7.9E-20 132.1 8.9 80 36-118 39-120 (126)
272 2dis_A Unnamed protein product 99.6 2E-15 7E-20 130.0 8.4 83 319-401 6-93 (109)
273 3lqv_A PRE-mRNA branch site pr 99.6 4.4E-15 1.5E-19 129.3 10.6 81 319-401 6-86 (115)
274 2lcw_A RNA-binding protein FUS 99.4 1E-16 3.5E-21 140.0 0.0 87 37-123 5-99 (116)
275 1whx_A Hypothetical protein ri 99.6 7.5E-16 2.6E-20 133.1 5.4 78 36-119 7-84 (111)
276 1x4f_A Matrin 3; structural ge 99.6 2.5E-15 8.7E-20 128.5 8.6 80 36-121 22-104 (112)
277 2dgt_A RNA-binding protein 30; 99.6 2.4E-15 8.3E-20 125.3 8.3 80 34-121 5-84 (92)
278 2cqg_A TDP-43, TAR DNA-binding 99.6 5.6E-15 1.9E-19 125.9 10.8 81 319-401 13-94 (103)
279 1nu4_A U1A RNA binding domain; 99.6 1.5E-15 5.2E-20 127.9 7.1 84 318-403 5-92 (97)
280 2la4_A Nuclear and cytoplasmic 99.6 2.8E-15 9.7E-20 127.2 8.7 77 319-400 25-101 (101)
281 1x4b_A Heterogeneous nuclear r 99.6 3.3E-15 1.1E-19 130.3 9.3 81 320-401 26-107 (116)
282 2jwn_A Embryonic polyadenylate 99.6 3.7E-15 1.3E-19 131.6 9.7 78 321-399 36-114 (124)
283 1x4f_A Matrin 3; structural ge 99.6 1E-15 3.5E-20 131.0 5.8 79 318-401 22-103 (112)
284 2xs2_A Deleted in azoospermia- 99.6 1.7E-15 5.7E-20 128.9 7.0 80 37-119 7-86 (102)
285 1x4c_A Splicing factor, argini 99.6 6.2E-15 2.1E-19 126.7 10.5 77 319-401 13-94 (108)
286 1nu4_A U1A RNA binding domain; 99.6 9.2E-16 3.2E-20 129.2 5.1 81 37-120 6-90 (97)
287 1why_A Hypothetical protein ri 99.6 5.4E-15 1.8E-19 124.5 9.7 77 319-400 15-93 (97)
288 2hgn_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 136.8 5.7 83 35-120 42-124 (139)
289 2jvo_A Nucleolar protein 3; nu 99.6 5E-15 1.7E-19 127.2 9.5 79 317-402 27-105 (108)
290 2kvi_A Nuclear polyadenylated 99.6 2.8E-15 9.4E-20 126.0 7.5 77 36-120 7-84 (96)
291 2dnq_A RNA-binding protein 4B; 99.6 7.1E-15 2.4E-19 121.9 9.9 76 319-401 6-81 (90)
292 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.5E-15 2.2E-19 133.0 10.5 79 319-397 61-140 (140)
293 1wf1_A RNA-binding protein RAL 99.6 5.4E-15 1.8E-19 127.6 9.5 77 36-120 24-101 (110)
294 2xnq_A Nuclear polyadenylated 99.6 3.9E-15 1.3E-19 125.2 8.4 76 36-119 19-95 (97)
295 1x4g_A Nucleolysin TIAR; struc 99.6 7.3E-15 2.5E-19 126.5 10.3 79 318-401 22-100 (109)
296 2xnq_A Nuclear polyadenylated 99.6 1.1E-14 3.6E-19 122.6 10.9 76 318-400 19-95 (97)
297 1wel_A RNA-binding protein 12; 99.6 1.9E-15 6.4E-20 133.5 6.4 84 319-403 23-107 (124)
298 2dgu_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 126.9 8.0 77 37-121 9-85 (103)
299 2cq2_A Hypothetical protein LO 99.6 4.1E-15 1.4E-19 127.3 8.1 78 318-400 22-106 (114)
300 2ytc_A PRE-mRNA-splicing facto 99.6 8.9E-15 3.1E-19 119.8 9.7 76 318-398 9-85 (85)
301 2f3j_A RNA and export factor b 99.6 3.6E-15 1.2E-19 140.0 8.3 84 35-119 84-167 (177)
302 2hgm_A HNRPF protein, heteroge 99.6 2E-15 6.7E-20 132.5 6.0 82 319-402 40-123 (126)
303 1whx_A Hypothetical protein ri 99.6 5.8E-15 2E-19 127.5 8.9 76 320-400 9-84 (111)
304 2hvz_A Splicing factor, argini 99.6 3.8E-15 1.3E-19 126.4 7.4 76 322-401 1-76 (101)
305 2e5g_A U6 snRNA-specific termi 99.6 1.7E-14 5.8E-19 120.6 10.9 79 36-120 5-83 (94)
306 2dha_A FLJ20171 protein; RRM d 99.6 3.3E-15 1.1E-19 130.8 6.6 79 37-117 21-103 (123)
307 2dgt_A RNA-binding protein 30; 99.6 1.4E-14 4.8E-19 120.6 10.1 77 318-401 7-83 (92)
308 2dnp_A RNA-binding protein 14; 99.6 1.2E-14 4.2E-19 120.4 9.7 76 318-400 6-81 (90)
309 2cpj_A Non-POU domain-containi 99.6 6.8E-15 2.3E-19 124.3 8.2 78 319-401 13-90 (99)
310 2dgu_A Heterogeneous nuclear r 99.6 1.1E-14 3.6E-19 124.1 9.4 77 319-402 9-85 (103)
311 2cqh_A IGF-II mRNA-binding pro 99.6 3.2E-15 1.1E-19 124.8 6.0 78 37-121 6-85 (93)
312 2j8a_A Histone-lysine N-methyl 99.6 8.1E-15 2.8E-19 125.6 8.5 79 322-400 3-96 (136)
313 2e5j_A Methenyltetrahydrofolat 99.6 7.8E-15 2.7E-19 123.5 8.4 78 319-400 17-94 (97)
314 2cpd_A Apobec-1 stimulating pr 99.5 1.5E-14 5.2E-19 122.2 10.1 79 34-120 10-90 (99)
315 1iqt_A AUF1, heterogeneous nuc 99.5 3E-15 1E-19 119.5 5.3 74 323-397 1-75 (75)
316 2pe8_A Splicing factor 45; RRM 99.5 3.4E-14 1.1E-18 120.9 11.9 84 319-402 6-96 (105)
317 2hgn_A Heterogeneous nuclear r 99.5 1.4E-15 4.9E-20 136.0 3.5 81 319-401 44-124 (139)
318 1x5p_A Negative elongation fac 99.5 2.3E-14 7.9E-19 120.6 10.7 79 35-121 11-89 (97)
319 2f3j_A RNA and export factor b 99.5 1.1E-14 3.7E-19 136.7 9.3 83 319-401 86-168 (177)
320 2xs2_A Deleted in azoospermia- 99.5 4.7E-15 1.6E-19 126.1 6.1 81 320-402 8-88 (102)
321 1sjr_A Polypyrimidine tract-bi 99.5 1.5E-14 5.1E-19 131.6 9.7 77 322-401 47-125 (164)
322 2e44_A Insulin-like growth fac 99.5 9.1E-15 3.1E-19 122.8 7.7 80 36-119 12-92 (96)
323 1wg1_A KIAA1579 protein, homol 99.5 5.8E-15 2E-19 121.8 6.3 78 37-121 3-80 (88)
324 2j8a_A Histone-lysine N-methyl 99.5 6.6E-15 2.2E-19 126.2 6.6 78 40-117 3-94 (136)
325 3d2w_A TAR DNA-binding protein 99.5 2.4E-14 8.2E-19 118.2 9.8 78 318-403 8-87 (89)
326 1fjc_A Nucleolin RBD2, protein 99.5 3.6E-15 1.2E-19 125.3 4.8 80 36-120 13-92 (96)
327 2kvi_A Nuclear polyadenylated 99.5 8.5E-15 2.9E-19 123.0 7.1 76 319-401 8-84 (96)
328 1sjr_A Polypyrimidine tract-bi 99.5 2.3E-14 8E-19 130.3 10.5 78 38-119 45-124 (164)
329 1fjc_A Nucleolin RBD2, protein 99.5 6.3E-15 2.2E-19 123.8 6.3 79 319-401 14-92 (96)
330 1fj7_A Nucleolin RBD1, protein 99.5 8.2E-16 2.8E-20 130.6 0.7 81 319-401 15-96 (101)
331 2cpx_A Hypothetical protein FL 99.5 1.1E-14 3.7E-19 126.8 7.9 80 319-401 23-106 (115)
332 3zzy_A Polypyrimidine tract-bi 99.5 2.8E-14 9.4E-19 125.0 10.3 75 323-401 30-107 (130)
333 2lcw_A RNA-binding protein FUS 99.3 6.9E-16 2.3E-20 134.6 0.0 85 319-403 5-98 (116)
334 2fc8_A NCL protein; structure 99.5 2.4E-14 8.1E-19 121.7 9.1 81 318-401 12-93 (102)
335 1wg1_A KIAA1579 protein, homol 99.5 2.1E-14 7E-19 118.5 8.3 75 320-400 4-78 (88)
336 2cqh_A IGF-II mRNA-binding pro 99.5 1.4E-14 4.7E-19 120.9 7.2 77 319-401 6-84 (93)
337 1x5p_A Negative elongation fac 99.5 4.5E-14 1.5E-18 118.8 10.2 76 319-401 13-88 (97)
338 3egn_A RNA-binding protein 40; 99.5 8.4E-15 2.9E-19 132.8 6.1 84 318-401 42-131 (143)
339 3egn_A RNA-binding protein 40; 99.5 3.4E-15 1.2E-19 135.4 2.7 84 36-119 42-130 (143)
340 1wf1_A RNA-binding protein RAL 99.5 2.9E-14 9.9E-19 123.0 8.4 74 320-400 26-100 (110)
341 2diu_A KIAA0430 protein; struc 99.5 3.8E-14 1.3E-18 114.9 8.4 70 323-401 11-85 (96)
342 2cpd_A Apobec-1 stimulating pr 99.5 8.6E-14 2.9E-18 117.5 10.6 76 319-401 13-90 (99)
343 3d2w_A TAR DNA-binding protein 99.5 2.5E-14 8.7E-19 118.1 6.8 77 36-119 8-84 (89)
344 2hzc_A Splicing factor U2AF 65 99.5 2.9E-14 9.9E-19 117.3 7.1 73 36-115 3-86 (87)
345 3zzy_A Polypyrimidine tract-bi 99.5 5.7E-14 1.9E-18 123.0 9.2 77 38-119 27-106 (130)
346 2e5i_A Heterogeneous nuclear r 99.5 8.7E-14 3E-18 121.4 10.2 74 323-401 27-103 (124)
347 2cq2_A Hypothetical protein LO 99.5 1.9E-14 6.4E-19 123.2 5.8 79 36-120 22-107 (114)
348 3beg_B Splicing factor, argini 99.5 2.4E-14 8.2E-19 124.5 6.5 71 37-114 14-84 (115)
349 3beg_B Splicing factor, argini 99.5 5.1E-14 1.7E-18 122.4 8.5 74 320-399 15-93 (115)
350 2dnl_A Cytoplasmic polyadenyla 99.5 2.5E-14 8.6E-19 124.2 6.4 77 37-116 6-85 (114)
351 2e44_A Insulin-like growth fac 99.5 5.5E-14 1.9E-18 118.0 8.1 79 320-401 14-93 (96)
352 1wf0_A TDP-43, TAR DNA-binding 99.5 2.6E-14 8.9E-19 117.9 5.7 78 37-121 3-80 (88)
353 2e5i_A Heterogeneous nuclear r 99.5 1.3E-13 4.5E-18 120.3 10.0 75 39-119 25-102 (124)
354 2e5g_A U6 snRNA-specific termi 99.5 8.2E-14 2.8E-18 116.4 8.2 76 320-400 7-82 (94)
355 2pe8_A Splicing factor 45; RRM 99.5 8.6E-14 2.9E-18 118.4 8.1 83 36-118 5-93 (105)
356 2bz2_A Negative elongation fac 99.5 7.6E-14 2.6E-18 122.2 7.9 78 36-121 36-113 (121)
357 2bz2_A Negative elongation fac 99.4 1.9E-13 6.4E-18 119.7 8.8 76 319-401 37-112 (121)
358 2voo_A Lupus LA protein; RNA-b 99.4 1.6E-13 5.5E-18 130.6 8.7 79 38-118 108-186 (193)
359 2hzc_A Splicing factor U2AF 65 99.4 3.2E-13 1.1E-17 111.0 9.3 70 320-395 5-85 (87)
360 3v4m_A Splicing factor U2AF 65 99.4 3.6E-13 1.2E-17 114.6 9.4 84 319-402 3-99 (105)
361 2dnl_A Cytoplasmic polyadenyla 99.4 1.9E-13 6.4E-18 118.6 7.5 78 320-400 7-88 (114)
362 2voo_A Lupus LA protein; RNA-b 99.4 4.7E-13 1.6E-17 127.4 10.5 81 320-401 108-188 (193)
363 1wf0_A TDP-43, TAR DNA-binding 99.4 1.5E-13 5.2E-18 113.2 5.5 74 320-401 4-79 (88)
364 3u1l_A PRE-mRNA-splicing facto 99.4 3E-13 1E-17 131.6 7.6 80 36-121 131-231 (240)
365 1jmt_A Splicing factor U2AF 35 99.4 1.7E-13 6E-18 116.4 4.9 62 336-397 41-103 (104)
366 3u1l_A PRE-mRNA-splicing facto 99.4 6.6E-13 2.3E-17 129.1 8.3 79 319-402 132-231 (240)
367 3ue2_A Poly(U)-binding-splicin 99.4 1.1E-12 3.6E-17 113.8 8.7 83 319-401 18-110 (118)
368 2dit_A HIV TAT specific factor 99.4 1.7E-12 5.9E-17 112.1 9.7 80 319-401 13-103 (112)
369 2dit_A HIV TAT specific factor 99.4 2.1E-12 7.2E-17 111.5 9.5 85 34-122 10-105 (112)
370 3v4m_A Splicing factor U2AF 65 99.3 1.4E-12 4.8E-17 110.9 6.0 82 37-118 3-96 (105)
371 3s6e_A RNA-binding protein 39; 99.3 1.5E-11 5.3E-16 105.7 12.2 83 319-404 5-97 (114)
372 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.9E-11 6.6E-16 102.4 11.7 76 39-121 10-92 (100)
373 1jmt_A Splicing factor U2AF 35 99.3 5.2E-13 1.8E-17 113.4 1.9 72 44-116 20-103 (104)
374 3ue2_A Poly(U)-binding-splicin 99.3 3.8E-12 1.3E-16 110.3 7.0 81 38-118 19-108 (118)
375 3tht_A Alkylated DNA repair pr 99.2 1.7E-11 5.7E-16 125.8 9.0 77 318-399 15-98 (345)
376 2d9o_A DNAJ (HSP40) homolog, s 99.2 5E-11 1.7E-15 99.9 9.3 64 331-400 27-90 (100)
377 3tht_A Alkylated DNA repair pr 99.1 6.7E-11 2.3E-15 121.3 6.8 66 35-106 14-81 (345)
378 3s6e_A RNA-binding protein 39; 99.1 1E-10 3.4E-15 100.6 6.3 77 37-117 5-91 (114)
379 1owx_A Lupus LA protein, SS-B, 99.0 8.9E-10 3E-14 94.7 9.8 81 317-402 14-98 (121)
380 2dnr_A Synaptojanin-1; RRM dom 99.0 1.4E-09 4.9E-14 87.3 8.5 75 318-400 4-86 (91)
381 1owx_A Lupus LA protein, SS-B, 98.9 3.1E-09 1.1E-13 91.3 7.2 73 37-115 16-92 (121)
382 2dnr_A Synaptojanin-1; RRM dom 98.8 9.8E-09 3.4E-13 82.4 7.1 74 37-119 5-86 (91)
383 1ufw_A Synaptojanin 2; RNP dom 98.7 1.4E-08 4.7E-13 81.9 6.4 74 317-398 11-93 (95)
384 3dxb_A Thioredoxin N-terminall 98.7 1.4E-08 4.7E-13 98.9 7.8 71 332-402 140-215 (222)
385 3dxb_A Thioredoxin N-terminall 98.6 4.7E-08 1.6E-12 95.1 7.1 68 51-118 141-212 (222)
386 1ufw_A Synaptojanin 2; RNP dom 98.6 3.3E-08 1.1E-12 79.7 4.2 73 35-116 11-92 (95)
387 2l9w_A U4/U6 snRNA-associated- 98.3 4.1E-06 1.4E-10 68.8 9.9 74 320-398 20-98 (117)
388 2dhx_A Poly (ADP-ribose) polym 98.0 4.8E-05 1.6E-09 62.1 10.6 88 38-140 7-99 (104)
389 2l9w_A U4/U6 snRNA-associated- 97.8 6.7E-05 2.3E-09 61.6 7.7 73 126-203 20-97 (117)
390 1wey_A Calcipressin 1; structu 97.6 5E-05 1.7E-09 62.3 5.1 73 40-118 6-83 (104)
391 1wey_A Calcipressin 1; structu 97.5 0.00016 5.6E-09 59.3 6.6 73 321-398 5-82 (104)
392 1uw4_A UPF3X; nonsense mediate 97.5 0.00024 8.2E-09 57.4 7.1 69 40-108 2-72 (91)
393 2dhx_A Poly (ADP-ribose) polym 97.3 0.0011 3.9E-08 54.0 9.4 88 126-231 7-99 (104)
394 1uw4_A UPF3X; nonsense mediate 97.0 0.0051 1.8E-07 49.5 9.9 67 322-388 2-71 (91)
395 1whv_A Poly(A)-specific ribonu 96.6 0.0053 1.8E-07 49.4 7.2 55 39-102 16-70 (100)
396 1wwh_A Nucleoporin 35, nucleop 96.5 0.0056 1.9E-07 51.7 6.8 71 37-115 22-93 (119)
397 2l08_A Regulator of nonsense t 96.3 0.002 6.8E-08 52.2 2.8 72 37-108 7-80 (97)
398 1whv_A Poly(A)-specific ribonu 96.2 0.011 3.8E-07 47.5 6.5 53 323-383 18-70 (100)
399 3pq1_A Poly(A) RNA polymerase; 96.2 0.0032 1.1E-07 66.6 4.4 56 39-100 53-108 (464)
400 1wwh_A Nucleoporin 35, nucleop 96.1 0.02 6.9E-07 48.3 8.1 72 127-205 24-96 (119)
401 3ctr_A Poly(A)-specific ribonu 96.0 0.01 3.6E-07 47.9 5.6 54 40-102 7-60 (101)
402 3ctr_A Poly(A)-specific ribonu 95.8 0.013 4.4E-07 47.3 5.2 53 323-383 8-60 (101)
403 2l08_A Regulator of nonsense t 95.1 0.048 1.6E-06 44.1 6.4 77 321-397 9-93 (97)
404 3p3d_A Nucleoporin 53; structu 94.8 0.034 1.2E-06 47.5 5.1 77 126-204 6-97 (132)
405 3p3d_A Nucleoporin 53; structu 94.0 0.019 6.6E-07 49.1 1.8 76 39-116 7-96 (132)
406 3pq1_A Poly(A) RNA polymerase; 93.1 0.039 1.3E-06 58.4 2.8 57 126-187 52-108 (464)
407 3d45_A Poly(A)-specific ribonu 78.8 3.5 0.00012 44.3 7.4 55 39-102 440-494 (507)
408 3d45_A Poly(A)-specific ribonu 73.3 6.5 0.00022 42.2 7.6 53 323-383 442-494 (507)
409 2g0c_A ATP-dependent RNA helic 45.5 42 0.0014 25.1 5.7 60 331-398 11-75 (76)
410 4eyt_A Telomerase associated p 40.2 1.3E+02 0.0044 23.3 7.7 77 127-210 12-95 (129)
411 2g0c_A ATP-dependent RNA helic 37.3 65 0.0022 24.0 5.7 58 50-116 12-74 (76)
412 2wx3_A MRNA-decapping enzyme 1 36.2 17 0.00057 25.2 1.7 21 599-619 18-38 (51)
413 2wx4_A DCP1, decapping protein 30.7 17 0.00057 24.6 1.0 20 600-619 17-36 (46)
414 3lcn_C MRNA transport factor G 26.8 76 0.0026 18.7 3.1 19 609-627 9-27 (29)
415 2f06_A Conserved hypothetical 25.9 2.9E+02 0.01 23.1 10.4 113 52-192 19-134 (144)
416 3j21_T 50S ribosomal protein L 25.8 1.8E+02 0.006 22.7 6.2 57 323-381 24-82 (86)
417 4a8j_B Elongator complex prote 24.0 1.5E+02 0.0051 28.3 6.6 49 39-87 166-222 (270)
418 3j21_T 50S ribosomal protein L 20.8 2.2E+02 0.0075 22.1 5.9 57 41-100 24-82 (86)
419 4e8u_A Putative uncharacterize 20.3 1.3E+02 0.0046 26.7 5.1 47 129-177 14-71 (172)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1e-42 Score=356.42 Aligned_cols=249 Identities=20% Similarity=0.300 Sum_probs=225.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
++++|||+|||.++|+++|+++|+.|| |.+|++ ++++|||||.|.+.++|.+|++.||+..|.|++|+|.|+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 568999999999999999999999999 999988 4567899999999999999999999999999999999865
Q ss_pred cCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCe
Q 006316 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (650)
Q Consensus 118 ~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~ 196 (650)
. .++|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|++.|+|..+.|+
T Consensus 94 ~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 94 T--------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp C--------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred C--------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3 368999999999999999999999999999999988 5899999999999999999999999999999999
Q ss_pred eeEEcccccccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHH
Q 006316 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276 (650)
Q Consensus 197 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai 276 (650)
.|.|.+...+...
T Consensus 166 ~i~v~~a~~~~~~------------------------------------------------------------------- 178 (284)
T 3smz_A 166 TLYVHWTDAGQLT------------------------------------------------------------------- 178 (284)
T ss_dssp ECEEEECCGGGCC-------------------------------------------------------------------
T ss_pred EEEEEECCCCCCC-------------------------------------------------------------------
Confidence 9999765321100
Q ss_pred HHHcCCccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCC-CHHHHHHHHhhcCCeEEEEEee
Q 006316 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI-SDDKLKELFSEFGTITSCKVMR 355 (650)
Q Consensus 277 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~-t~~~l~~~F~~~G~i~~~~i~~ 355 (650)
......++|||+|||..+ |+++|+++|+.||.|++++++.
T Consensus 179 ---------------------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~ 219 (284)
T 3smz_A 179 ---------------------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC 219 (284)
T ss_dssp ---------------------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE
T ss_pred ---------------------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE
Confidence 000245689999999996 9999999999999999999999
Q ss_pred CCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHHHHHhc
Q 006316 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL 407 (650)
Q Consensus 356 ~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r~~~~ 407 (650)
+.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.++..++..+
T Consensus 220 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~ 271 (284)
T 3smz_A 220 GQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSML 271 (284)
T ss_dssp CSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHH
T ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchh
Confidence 9999999999999999999999999999999999999999999887766554
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.8e-42 Score=356.19 Aligned_cols=252 Identities=20% Similarity=0.388 Sum_probs=214.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....++++|||+|||.++|+++|+++|+.||+|.+|+++++..+ ++|||||.|.+.++|.+|+ .+|+..|.|++|+|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEE
Confidence 34567899999999999999999999999999999999998643 5799999999999999999 58999999999999
Q ss_pred cccccCcccccCCCceeEecCCCcccchHHHHhhhcccC-ceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCce
Q 006316 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (650)
Q Consensus 114 ~~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G-~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (650)
.++ ..++|||+|||.++++++|+++|+.|| .|.+|.+..+..|.++|||||+|.+.++|.+|++.|||..
T Consensus 113 ~~~---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 113 SHL---------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp EEC---------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred EEC---------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 886 357899999999999999999999999 9999999999778899999999999999999999999999
Q ss_pred ecCeeeEEcccccccccccccccccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhH
Q 006316 193 LNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272 (650)
Q Consensus 193 i~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A 272 (650)
+.|+.|.|.++.........
T Consensus 184 ~~g~~l~v~~a~~~~~~~~~------------------------------------------------------------ 203 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSKRT------------------------------------------------------------ 203 (292)
T ss_dssp ETTEECEEEECCCC------------------------------------------------------------------
T ss_pred eCCcEEEEEECCCCcccccc------------------------------------------------------------
Confidence 99999999765432111000
Q ss_pred HHHHHHHcCCccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCC-CCHHHHHHHHhhcCCeEEE
Q 006316 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS-ISDDKLKELFSEFGTITSC 351 (650)
Q Consensus 273 ~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~~ 351 (650)
.......++|||+|||.. +|+++|+++|+.||.|.++
T Consensus 204 ------------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v 241 (292)
T 2ghp_A 204 ------------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKI 241 (292)
T ss_dssp ---------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEE
T ss_pred ------------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEE
Confidence 001234568999999999 9999999999999999999
Q ss_pred EEeeCCC--CCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchh
Q 006316 352 KVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 352 ~i~~~~~--g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
+++.+.+ |.++|||||+|.+.++|.+|+ .|||..++|+.|.|.|+.++
T Consensus 242 ~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 242 NIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999887 999999999999999999999 99999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.3e-34 Score=278.70 Aligned_cols=175 Identities=62% Similarity=1.059 Sum_probs=161.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
+..++++|||+|||+++||++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++|++.+|+..+.|+.|++.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceec
Q 006316 115 YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (650)
Q Consensus 115 ~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~ 194 (650)
++...........++|||+||+.++++++|+++|+.||.|.+|++..|..+ ++|||||+|.+.++|.+|++.|||..|+
T Consensus 91 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 91 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp ECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 998877777777889999999999999999999999999999999988544 8999999999999999999999999999
Q ss_pred CeeeEEcccccccccc
Q 006316 195 DKQVFVGPFLRKQERE 210 (650)
Q Consensus 195 g~~l~v~~~~~~~~~~ 210 (650)
|+.|.|.++..+.++.
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999887665543
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9e-31 Score=244.95 Aligned_cols=163 Identities=28% Similarity=0.562 Sum_probs=154.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccccC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~ 119 (650)
++|||+|||.++|+++|+++|+.||+|.+|++++++ +++++|||||+|.+.++|.+|++.||+..+.|+.|+|.|+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999996 4779999999999999999999999999999999999999877
Q ss_pred cccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCeee
Q 006316 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198 (650)
Q Consensus 120 ~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l 198 (650)
.........+|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 7777777889999999999999999999999999999999998 778999999999999999999999999999999999
Q ss_pred EEccc
Q 006316 199 FVGPF 203 (650)
Q Consensus 199 ~v~~~ 203 (650)
.|.++
T Consensus 160 ~v~~a 164 (166)
T 3md3_A 160 RINWA 164 (166)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99775
No 5
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.97 E-value=1.2e-31 Score=231.85 Aligned_cols=80 Identities=48% Similarity=0.770 Sum_probs=76.3
Q ss_pred cccchhhhhhcCChHHHHHHhhhcchhhhhccCCCCccchhhhccCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Q 006316 550 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 629 (650)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~ 629 (650)
+.++++++|+++++++||+||||+|||+|+.++|++|+||||||||||++|||+||+|+++|++||+||++||++|++++
T Consensus 50 ~~pl~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~ 129 (144)
T 1g9l_A 50 QEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE 129 (144)
T ss_dssp CCCCSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHHTTSSST
T ss_pred cchhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998654
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=4.7e-30 Score=250.67 Aligned_cols=174 Identities=34% Similarity=0.515 Sum_probs=156.4
Q ss_pred cccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 217 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
..++|||+|||.++++++|+++|++||.|.++.++++ .+++++|||||+|.+.++|.+|++.+++..+.|+.+.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 3478999999999999999999999999999999998 568999999999999999999999999999999999998876
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHH
Q 006316 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375 (650)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A 375 (650)
....... ....+|||+||+..+|+++|+++|++||.|++++|+.+. +.++|||||+|.+.++|
T Consensus 94 ~~~~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 94 RDPSLRK----------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAA 156 (213)
T ss_dssp CCTHHHH----------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHH
T ss_pred ccccccc----------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHH
Confidence 5432211 134589999999999999999999999999999999886 44899999999999999
Q ss_pred HHHHHHhCCceecCeeEEEEecchhHHHHHhc
Q 006316 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARL 407 (650)
Q Consensus 376 ~~A~~~l~~~~~~g~~l~V~~a~~~~~r~~~~ 407 (650)
.+|++.|||..|+|+.|.|.+++++..+....
T Consensus 157 ~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 157 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCHHHHHHHH
T ss_pred HHHHHHhCCCEECCEEEEEEEcCCCcccchhh
Confidence 99999999999999999999999888776543
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=3e-30 Score=248.59 Aligned_cols=173 Identities=25% Similarity=0.441 Sum_probs=150.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..++++|||+|||+++||++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++. ++..|.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 35679999999999999999999999999999999999999999999999999999999999966 88899999999998
Q ss_pred cccCcccc----cCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCC
Q 006316 116 SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190 (650)
Q Consensus 116 s~~~~~~~----~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng 190 (650)
+....... ....++|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|++. ++
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~ 167 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY 167 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC
Confidence 76543322 223578999999999999999999999999999999998 5789999999999999999999986 89
Q ss_pred ceecCeeeEEcccccccccc
Q 006316 191 MLLNDKQVFVGPFLRKQERE 210 (650)
Q Consensus 191 ~~i~g~~l~v~~~~~~~~~~ 210 (650)
..++|+.|.|.++..+....
T Consensus 168 ~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 168 HTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CEETTEECEEEECC------
T ss_pred cEECCEEEEEEecCChhHhc
Confidence 99999999999887765543
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=2.8e-30 Score=242.28 Aligned_cols=163 Identities=28% Similarity=0.532 Sum_probs=152.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
++++|||+|||.++|+++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|++|++.|++..+.|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCC-CCCcccEEEEEECCHHHHHHHHHhhCCceecC-
Q 006316 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLND- 195 (650)
Q Consensus 118 ~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g- 195 (650)
.... ....++|||+|||.++++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 82 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 5433 3456789999999999999999999999999999999985 88899999999999999999999999999987
Q ss_pred -eeeEEcc
Q 006316 196 -KQVFVGP 202 (650)
Q Consensus 196 -~~l~v~~ 202 (650)
+.|.|.+
T Consensus 160 ~~~l~V~~ 167 (168)
T 1b7f_A 160 SQPLSVRL 167 (168)
T ss_dssp SSCCEEEE
T ss_pred CeEEEEEe
Confidence 8888864
No 9
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.97 E-value=1.5e-32 Score=215.18 Aligned_cols=77 Identities=86% Similarity=1.147 Sum_probs=73.9
Q ss_pred ccchhhhhhcCChHHHHHHhhhcchhhhhccCCCCccchhhhccCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHh
Q 006316 551 TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 627 (650)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~ 627 (650)
+.+++++|+++++++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|++
T Consensus 7 ~~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~ 83 (85)
T 2dyd_A 7 IGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQ 83 (85)
T ss_dssp TTTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSS
T ss_pred hhhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999998764
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=4.4e-30 Score=240.50 Aligned_cols=163 Identities=32% Similarity=0.552 Sum_probs=150.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
++++|||+|||+++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.|+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred cCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCe
Q 006316 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (650)
Q Consensus 118 ~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~ 196 (650)
.... ....++|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 81 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 5433 335678999999999999999999999999999999998 4788999999999999999999999999999996
Q ss_pred e--eEEcc
Q 006316 197 Q--VFVGP 202 (650)
Q Consensus 197 ~--l~v~~ 202 (650)
. |.|.+
T Consensus 159 ~~~i~v~~ 166 (167)
T 1fxl_A 159 TEPITVKF 166 (167)
T ss_dssp SSCCEEEE
T ss_pred ccceEEEe
Confidence 5 66643
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=3.9e-30 Score=251.77 Aligned_cols=170 Identities=22% Similarity=0.478 Sum_probs=153.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
++++|||+|||.++||++|+++|+.||.|.+|+++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999998876
Q ss_pred cCccc---------ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHh
Q 006316 118 RDPTI---------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187 (650)
Q Consensus 118 ~~~~~---------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~ 187 (650)
..... .....++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 54321 2245679999999999999999999999999999999998 6788999999999999999999999
Q ss_pred hCCceecCeeeEEccccccc
Q 006316 188 LNGMLLNDKQVFVGPFLRKQ 207 (650)
Q Consensus 188 lng~~i~g~~l~v~~~~~~~ 207 (650)
|||..|.|+.|.|.++..+.
T Consensus 187 l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCS
T ss_pred ccCCEeCCcEEEEEEecCCC
Confidence 99999999999998876553
No 12
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.97 E-value=3e-32 Score=213.53 Aligned_cols=78 Identities=51% Similarity=0.722 Sum_probs=74.5
Q ss_pred ccccchhhhhhcCChHHHHHHhhhcchhhhhccCCCCccchhhhccCCChHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 006316 549 MQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 626 (650)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~ 626 (650)
++.++++++|+++++++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|+
T Consensus 6 ~~~~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~~ 83 (85)
T 1nmr_A 6 SQGQNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHM 83 (85)
T ss_dssp CCCCTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCC
T ss_pred CCCccCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999998764
No 13
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.97 E-value=1.9e-31 Score=212.22 Aligned_cols=79 Identities=32% Similarity=0.432 Sum_probs=75.4
Q ss_pred ccchhhhhhcCChHHHHHHhhhcchhhhhc--cCCCCccchhhhccCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Q 006316 551 TGALASALANASPEQQRTLLGENLYPLVDQ--LEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 628 (650)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~g~~l~~~~~~--~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~ 628 (650)
.+.++++|+++++++||+||||+|||+|++ ++|++||||||||||||++|||+||+|+++|++||+||++||++|++.
T Consensus 5 ~p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~ 84 (92)
T 1ifw_A 5 SPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKE 84 (92)
T ss_dssp CSSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999 999999999999999999999999999999999999999999999964
Q ss_pred c
Q 006316 629 Q 629 (650)
Q Consensus 629 ~ 629 (650)
+
T Consensus 85 ~ 85 (92)
T 1ifw_A 85 Q 85 (92)
T ss_dssp C
T ss_pred h
Confidence 3
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=1.9e-29 Score=238.09 Aligned_cols=165 Identities=24% Similarity=0.391 Sum_probs=147.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCC--ccccEEEEEecchhHHHHHcccccCccCC---CCccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNYNAAHEATRALDELNFTPLN---GKPIR 112 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~--~s~G~a~V~F~~~~~A~~Al~~ln~~~i~---g~~i~ 112 (650)
.+++|||+|||+++||++|+++|++||+|.+|+++++..++ +++|||||+|.+.++|++|++.||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998887 89999999999999999999999987765 56677
Q ss_pred ccccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCce
Q 006316 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (650)
Q Consensus 113 v~~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (650)
+.++..... .....++|||+|||.++++++|+++|+.||.|.++.+..+.+|.++|||||+|.+.++|.+|++.|||..
T Consensus 82 ~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Ecccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 766554322 2335678999999999999999999999999999999999889999999999999999999999999987
Q ss_pred ec---CeeeEEccc
Q 006316 193 LN---DKQVFVGPF 203 (650)
Q Consensus 193 i~---g~~l~v~~~ 203 (650)
+. ++.|.|.++
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 76 388888654
No 15
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.96 E-value=8.8e-31 Score=207.42 Aligned_cols=80 Identities=48% Similarity=0.775 Sum_probs=75.6
Q ss_pred ccchhhhhhcCChHHHHHHhhhcchhhhhccCCCCccchhhhccCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHhhcc
Q 006316 551 TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQA 630 (650)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~~ 630 (650)
.++++++|+++++++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||+.|++++.
T Consensus 5 ~~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~ 84 (88)
T 3kuj_A 5 SPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 84 (88)
T ss_dssp -CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999998774
No 16
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-29 Score=233.09 Aligned_cols=165 Identities=31% Similarity=0.527 Sum_probs=151.8
Q ss_pred cceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhh
Q 006316 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298 (650)
Q Consensus 219 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 298 (650)
++|||+|||.++++++|+++|++||.|.++.+..+.+++++|||||+|.+.++|.+|++.+++..+.|+.+.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 36999999999999999999999999999999999889999999999999999999999999999999999999886532
Q ss_pred HHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHH
Q 006316 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASK 377 (650)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~ 377 (650)
. ......++|||+|||..+|+++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 1 123456789999999999999999999999999999999884 78999999999999999999
Q ss_pred HHHHhCCceecCeeEEEEecch
Q 006316 378 ALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 378 A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
|+..|||..++|+.|.|.|+++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999863
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=6.6e-30 Score=239.55 Aligned_cols=164 Identities=22% Similarity=0.482 Sum_probs=149.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
++++|||+|||.++||++|+++|+.||.|.+|++.+++.+++++|||||.|.+.++|++|++. ...+.|+.|++.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999975 467999999998876
Q ss_pred cCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCe
Q 006316 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (650)
Q Consensus 118 ~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~ 196 (650)
.... ....++|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|++ +++..+.|+
T Consensus 80 ~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 80 PRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp CHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred chhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 4432 224568999999999999999999999999999999998 579999999999999999999997 899999999
Q ss_pred eeEEcccccc
Q 006316 197 QVFVGPFLRK 206 (650)
Q Consensus 197 ~l~v~~~~~~ 206 (650)
.|.|.++.++
T Consensus 157 ~i~V~~a~pk 166 (167)
T 2cjk_A 157 KIEIKRAEPR 166 (167)
T ss_dssp CEEEEECCCC
T ss_pred EEEEeecCCC
Confidence 9999887543
No 18
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=2.4e-28 Score=239.03 Aligned_cols=177 Identities=27% Similarity=0.431 Sum_probs=154.4
Q ss_pred cccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 217 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~-~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
..++|||+|||.++++++|+++|++||.|.++.++.+. +|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45789999999999999999999999999999998884 78899999999999999999999999999999999999887
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHH
Q 006316 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374 (650)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~ 374 (650)
........... ........++|||+||+..+|+++|+++|++||.|++++++.+. +|+++|||||+|.+.++
T Consensus 107 ~~~~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 107 NIGQAQPIIDQ-------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CCGGGHHHHHH-------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred Cccccchhhhh-------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 65433222111 11123456799999999999999999999999999999999985 78999999999999999
Q ss_pred HHHHHHHhCCceecCeeEEEEecchh
Q 006316 375 ASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 375 A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
|.+|++.|||..++|+.|.|.++..+
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHHHccCCEeCCcEEEEEEecCC
Confidence 99999999999999999999998754
No 19
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=5e-28 Score=232.96 Aligned_cols=176 Identities=23% Similarity=0.430 Sum_probs=148.7
Q ss_pred ccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecc
Q 006316 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (650)
Q Consensus 216 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 294 (650)
...++|||+|||.++++++|+++|+.||.|.++.++.+ .+|+++|||||+|.+.++|.+|++. ++..+.|+.|.+.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 45688999999999999999999999999999999998 4688999999999999999999976 889999999999988
Q ss_pred hhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHH
Q 006316 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAE 373 (650)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~ 373 (650)
..+..... .......++|||+|||.++|+++|+++|+.||.|++++++.+. +|.++|||||+|.+.+
T Consensus 90 ~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 90 VSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp CC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cCcccccc------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 76432211 1122355789999999999999999999999999999999986 7899999999999999
Q ss_pred HHHHHHHHhCCceecCeeEEEEecchhHHHHH
Q 006316 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRA 405 (650)
Q Consensus 374 ~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r~~ 405 (650)
+|.+|+.. +|..++|+.|.|.++.+++....
T Consensus 158 ~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 99999987 89999999999999998876543
No 20
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=5.1e-28 Score=226.39 Aligned_cols=162 Identities=33% Similarity=0.621 Sum_probs=149.3
Q ss_pred ccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchh
Q 006316 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 218 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~-~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 296 (650)
.++|||+|||.++++++|+++|+.||.|.++.++.+. +|+++|||||+|.+.++|.+|++.+++..+.|+.+.+.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 3689999999999999999999999999999999985 899999999999999999999999999999999999998865
Q ss_pred hhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHH
Q 006316 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375 (650)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A 375 (650)
... ....++|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 321 2345789999999999999999999999999999999887 788999999999999999
Q ss_pred HHHHHHhCCceecCee--EEEEec
Q 006316 376 SKALTEMNGKMVVSKP--LYVALA 397 (650)
Q Consensus 376 ~~A~~~l~~~~~~g~~--l~V~~a 397 (650)
.+|++.|||..++|+. |.|.||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999965 888875
No 21
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.8e-28 Score=228.61 Aligned_cols=162 Identities=34% Similarity=0.574 Sum_probs=150.3
Q ss_pred ccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchh
Q 006316 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 218 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 296 (650)
.++|||+|||.++++++|+++|+.||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.+++..+.|+.|.+.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 478999999999999999999999999999999887 5788999999999999999999999999999999999998865
Q ss_pred hhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHH
Q 006316 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375 (650)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A 375 (650)
+.. ....++|||+|||..+++++|+++|++||.|+++++..+. +|.++|||||+|.+.++|
T Consensus 83 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 83 GGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp CSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 321 2345789999999999999999999999999999999987 889999999999999999
Q ss_pred HHHHHHhCCceecC--eeEEEEec
Q 006316 376 SKALTEMNGKMVVS--KPLYVALA 397 (650)
Q Consensus 376 ~~A~~~l~~~~~~g--~~l~V~~a 397 (650)
.+|++.|||..+.| ++|.|.||
T Consensus 145 ~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 145 QEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999987 99999986
No 22
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=5.8e-28 Score=227.93 Aligned_cols=164 Identities=27% Similarity=0.515 Sum_probs=146.3
Q ss_pred ccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCC---CcceeEEEEeCChhhHHHHHHHHcCCccC---CeeEEE
Q 006316 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG---KSKCFGFVNFDDPDDAARSVEALNGKKFD---DKEWYV 291 (650)
Q Consensus 218 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g---~srg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~v 291 (650)
.++|||+|||.++++++|+++|++||.|.++.++++..+ +++|||||+|.+.++|.+|++.+++..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 478999999999999999999999999999999998655 79999999999999999999999998765 566777
Q ss_pred ecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCC
Q 006316 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371 (650)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~ 371 (650)
.++..... .....++|||+|||..+|+++|+++|++||.|+++++..+.+|.++|||||+|.+
T Consensus 83 ~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 83 KPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 145 (175)
T ss_dssp EECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred cccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECC
Confidence 66654321 1234568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceec---CeeEEEEecc
Q 006316 372 AEEASKALTEMNGKMVV---SKPLYVALAQ 398 (650)
Q Consensus 372 ~~~A~~A~~~l~~~~~~---g~~l~V~~a~ 398 (650)
.++|.+|++.|||..+. +++|.|.||.
T Consensus 146 ~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999998775 4999999974
No 23
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2.8e-29 Score=237.29 Aligned_cols=166 Identities=20% Similarity=0.308 Sum_probs=149.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...++++|||+|||.++|+++|+++|+.||.|.. .++++..+++++|||||+|.+.++|++|+ .||+..|.|++|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 3456799999999999999999999999998776 44555578899999999999999999999 599999999999999
Q ss_pred ccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceec
Q 006316 115 YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (650)
Q Consensus 115 ~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~ 194 (650)
|+...........++|||+|||.++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|||..+.
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 162 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 9987766666677899999999999999999999999998766 667889999999999999999999999999999
Q ss_pred CeeeEEcccccc
Q 006316 195 DKQVFVGPFLRK 206 (650)
Q Consensus 195 g~~l~v~~~~~~ 206 (650)
|+.|.|.++..+
T Consensus 163 g~~i~v~~a~~k 174 (175)
T 1fje_B 163 GRSVSLYYTGEK 174 (175)
T ss_dssp TEEEEEEECSSC
T ss_pred CeEEEEEecCCC
Confidence 999999877543
No 24
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=5.7e-28 Score=227.44 Aligned_cols=158 Identities=24% Similarity=0.515 Sum_probs=144.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCcc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~----G-------~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~ 105 (650)
+++++|||+|||+++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|++|+ .||+..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467999999999999999999999999 7 788887754 4689999999999999999 899999
Q ss_pred CCCCcccccccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHH
Q 006316 106 LNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184 (650)
Q Consensus 106 i~g~~i~v~~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~A 184 (650)
|.|++|+|.++..... ....++|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|
T Consensus 75 ~~g~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp ETTEECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ecCceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 9999999998765432 344688999999999999999999999999999999999 5899999999999999999999
Q ss_pred HHhhCCceecCeeeEEccc
Q 006316 185 IDKLNGMLLNDKQVFVGPF 203 (650)
Q Consensus 185 i~~lng~~i~g~~l~v~~~ 203 (650)
++.|||..+.|+.|.|.++
T Consensus 153 ~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEETTEECEEEEC
T ss_pred HHHcCCCEECCeEEEEEeC
Confidence 9999999999999999764
No 25
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=7.7e-28 Score=245.92 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=158.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
..++|||+|||.++|+++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|.+|++.||+..|.|++|+|.|+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCccc-ccCCCceeEecCCCccc-chHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecC
Q 006316 118 RDPTI-RKSGAGNIFIKNLDKSI-DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (650)
Q Consensus 118 ~~~~~-~~~~~~~l~V~nLp~~i-~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g 195 (650)
..... .....++|||+|||.++ ++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 65432 23456789999999996 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEccccccccc
Q 006316 196 KQVFVGPFLRKQER 209 (650)
Q Consensus 196 ~~l~v~~~~~~~~~ 209 (650)
+.|.|.++..+..+
T Consensus 254 ~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 254 SHLRVSFCAPGPPG 267 (284)
T ss_dssp EECEEEECCSSSCH
T ss_pred eEEEEEEecCCCcc
Confidence 99999988766544
No 26
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=8e-28 Score=231.93 Aligned_cols=163 Identities=23% Similarity=0.492 Sum_probs=143.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCcc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~----G-------~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~ 105 (650)
..+++|||+|||+++||++|+++|+.| | .|.++++. +++|||||+|.+.++|++|+ .||+..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357999999999999999999999999 5 66666654 45789999999999999999 899999
Q ss_pred CCCCcccccccccCccc------------------ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCC
Q 006316 106 LNGKPIRIMYSYRDPTI------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQ 166 (650)
Q Consensus 106 i~g~~i~v~~s~~~~~~------------------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~ 166 (650)
|.|++|+|.|+...... .....++|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 99999999987654211 1135578999999999999999999999999999999999 4889
Q ss_pred cccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcccccc
Q 006316 167 SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 167 skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 206 (650)
++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..+
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999999999999999999999887654
No 27
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=4.8e-28 Score=226.82 Aligned_cols=162 Identities=27% Similarity=0.493 Sum_probs=147.2
Q ss_pred ccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchh
Q 006316 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 218 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~-~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 296 (650)
.++|||+|||.++++++|+++|+.||.|.++.++.+ .+|+++|||||+|.+.++|.+|+.. +..+.|+.+.+.++..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 478999999999999999999999999999999988 5789999999999999999999984 6788999998888765
Q ss_pred hhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHH
Q 006316 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375 (650)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A 375 (650)
+... ...++|||+|||.++|+++|+++|++||.|.++++..+. +|.++|||||+|.+.++|
T Consensus 81 ~~~~------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 81 RDEQ------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp HHHH------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred hhhc------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 4321 134589999999999999999999999999999999885 799999999999999999
Q ss_pred HHHHHHhCCceecCeeEEEEecchh
Q 006316 376 SKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 376 ~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
.+|++ +++..++|+.|.|.++.++
T Consensus 143 ~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 143 DRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99998 8999999999999999875
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=5.8e-28 Score=233.47 Aligned_cols=153 Identities=19% Similarity=0.290 Sum_probs=135.1
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 38 VSTSLYVGDLD-LSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 38 ~~~~L~V~nLp-~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
++++|||+||| .++|+++|+++|+.||.|.+|++.++ ++|||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 79999999999999999999999875 3589999999999999999999999999999999987
Q ss_pred ccCccc-----------------------c------------cCCCceeEecCCCcccchHHHHhhhcccCce--eEEEE
Q 006316 117 YRDPTI-----------------------R------------KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI--LSCKV 159 (650)
Q Consensus 117 ~~~~~~-----------------------~------------~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I--~~~~v 159 (650)
...... + .....+|||+|||.++++++|+++|+.||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 532110 0 0123479999999999999999999999999 89998
Q ss_pred eeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCe
Q 006316 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (650)
Q Consensus 160 ~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~ 196 (650)
..+. +.++|||||+|++.++|.+|+..|||..|.|.
T Consensus 158 ~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred EcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 8775 55679999999999999999999999999876
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=2.1e-27 Score=242.48 Aligned_cols=161 Identities=25% Similarity=0.445 Sum_probs=144.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~----~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
..++++|||+|||.++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999965 9999999999999986 67899999999999999999999999999999999
Q ss_pred cccccccCccc---------------------------------------------------------------------
Q 006316 112 RIMYSYRDPTI--------------------------------------------------------------------- 122 (650)
Q Consensus 112 ~v~~s~~~~~~--------------------------------------------------------------------- 122 (650)
+|.|+......
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 99987654320
Q ss_pred ----------------------------------------ccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC
Q 006316 123 ----------------------------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD 162 (650)
Q Consensus 123 ----------------------------------------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d 162 (650)
.....++|||+||+.++++++|+++|+.||.|.+|++..+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 1113467999999999999999999999999999999865
Q ss_pred CCCCcccEEEEEECCHHHHHHHHHhhCCceec-CeeeEEccc
Q 006316 163 SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPF 203 (650)
Q Consensus 163 ~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~-g~~l~v~~~ 203 (650)
.+|||||+|.+.++|.+|++.|||..+. |+.|.|.++
T Consensus 243 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 243 ----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 3689999999999999999999999999 999999775
No 30
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.95 E-value=9.8e-29 Score=181.75 Aligned_cols=60 Identities=45% Similarity=0.705 Sum_probs=58.9
Q ss_pred HHHHhhhcchhhhhccCCCCccchhhhccCCChHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 006316 566 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 625 (650)
Q Consensus 566 ~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~ 625 (650)
||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~ 60 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999999999999999999999999999999976
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=5e-27 Score=231.82 Aligned_cols=161 Identities=24% Similarity=0.281 Sum_probs=142.8
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 36 QFVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 36 ~~~~~~L~V~nLp~-~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
..++++|||+|||+ ++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34679999999999 99999999999999999999999875 5799999999999999999999999999999999
Q ss_pred ccccCccc---------------------------------ccCCCceeEecCCCcccchHHHHhhhcccC-ceeEEEEe
Q 006316 115 YSYRDPTI---------------------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKVA 160 (650)
Q Consensus 115 ~s~~~~~~---------------------------------~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G-~I~~~~v~ 160 (650)
|+...... .....++|||+|||.++++++|+++|+.|| .|.+|++.
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 87643100 011247899999999999999999999999 99999986
Q ss_pred eCCCCCcccEEEEEECCHHHHHHHHHhhCCceec-CeeeEEccccc
Q 006316 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFLR 205 (650)
Q Consensus 161 ~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~-g~~l~v~~~~~ 205 (650)
.+ ++|||||+|.+.++|.+|++.|||..+. |+.|.|.++..
T Consensus 186 ~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 186 QK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 64 5789999999999999999999999999 99999987643
No 32
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=4.1e-27 Score=227.54 Aligned_cols=175 Identities=18% Similarity=0.213 Sum_probs=141.9
Q ss_pred ccceeccCCC-CCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchh
Q 006316 218 FNNVYVKNLS-ETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 218 ~~~l~V~nlp-~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 296 (650)
.++|||+||+ ..+++++|+++|++||.|.+++++++ ++|||||+|.+.++|..|++.|||..+.|+.|.|.++..
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 4689999999 89999999999999999999999875 478999999999999999999999999999999998864
Q ss_pred hhHHHHH---Hh------hhhhhh----------hhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCe--EEEEEee
Q 006316 297 KYEREME---LK------GKFEQS----------LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI--TSCKVMR 355 (650)
Q Consensus 297 ~~~~~~~---~~------~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i--~~~~i~~ 355 (650)
+...... .. ..+... ........++.+|||+|||+++|+++|+++|++||.| .+++++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 3210000 00 000000 0000012346789999999999999999999999999 8999998
Q ss_pred CCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCe----eEEEEec
Q 006316 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK----PLYVALA 397 (650)
Q Consensus 356 ~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~----~l~V~~a 397 (650)
+. |.++|||||+|.+.++|.+|+..|||..+.|+ ++.|.|+
T Consensus 160 ~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 160 GK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 86 56679999999999999999999999999876 5777664
No 33
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=2.7e-26 Score=234.16 Aligned_cols=178 Identities=23% Similarity=0.392 Sum_probs=147.5
Q ss_pred ccccceeccCCCCCCCHHHHH----HHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEE
Q 006316 216 TRFNNVYVKNLSETTTEDDLK----KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291 (650)
Q Consensus 216 ~~~~~l~V~nlp~~~t~e~l~----~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 291 (650)
...++|||+||+.++++++|+ ++|++||.|.++.+.+ +++++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 345789999999999999977 8999999999998886 6789999999999999999999999999999999999
Q ss_pred ecchhhhHHHHHHhhhhhhhh-----------------------------------------------------------
Q 006316 292 GKAQKKYEREMELKGKFEQSL----------------------------------------------------------- 312 (650)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 312 (650)
.++..+...............
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998654421111100000000
Q ss_pred ----------------------------------hhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC
Q 006316 313 ----------------------------------KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358 (650)
Q Consensus 313 ----------------------------------~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 358 (650)
........+++|||+||+..+|+++|+++|++||.|++|+++.++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 000122345789999999999999999999999999999999764
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHhCCceec-CeeEEEEecch
Q 006316 359 GISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399 (650)
Q Consensus 359 g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~V~~a~~ 399 (650)
+|||||+|.+.++|.+|++.|||..++ |+.|+|.|+++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 579999999999999999999999999 99999999863
No 34
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=5.6e-27 Score=240.49 Aligned_cols=167 Identities=20% Similarity=0.343 Sum_probs=145.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
..++|||+|||.++|+++|+++|+.|| .|.+|++.++.. ++++|||||.|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999999865 789999999999999999999999999999999999998
Q ss_pred ccCccc-----ccCCCceeEecCCCcc-cchHHHHhhhcccCceeEEEEeeCCC--CCcccEEEEEECCHHHHHHHHHhh
Q 006316 117 YRDPTI-----RKSGAGNIFIKNLDKS-IDNKALHDTFSTFGNILSCKVATDSL--GQSRGYGFVQFDNEESAKSAIDKL 188 (650)
Q Consensus 117 ~~~~~~-----~~~~~~~l~V~nLp~~-i~~~~L~~~Fs~~G~I~~~~v~~d~~--g~skg~afV~F~~~e~A~~Ai~~l 188 (650)
...... .....++|||+|||.+ +++++|+++|+.||.|.+|++..+.. |.++|||||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 654332 2235678999999999 99999999999999999999999876 999999999999999999999 99
Q ss_pred CCceecCeeeEEcccccc
Q 006316 189 NGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 189 ng~~i~g~~l~v~~~~~~ 206 (650)
||..|.|+.|.|.++.++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999887654
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=1.7e-26 Score=232.70 Aligned_cols=158 Identities=28% Similarity=0.517 Sum_probs=144.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..++++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||.|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 456789999999999999999999999999999999653 58999999999999999999999999999999999
Q ss_pred cccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhC-Cceec
Q 006316 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN-GMLLN 194 (650)
Q Consensus 116 s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~ln-g~~i~ 194 (650)
+.. .++|||+|||.++++++|+++|+.||.|.+|.+..+.+|.++|||||+|.+.++|.+|++.|| +..+.
T Consensus 93 a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 93 ATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp CCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred ccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 863 468999999999999999999999999999999999999999999999999999999999994 55554
Q ss_pred ---CeeeEEccccccc
Q 006316 195 ---DKQVFVGPFLRKQ 207 (650)
Q Consensus 195 ---g~~l~v~~~~~~~ 207 (650)
++.|.|.+.....
T Consensus 165 ~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 165 TTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SSSCCBCEEEECCCEE
T ss_pred cCCCceEEEeeccccC
Confidence 8999998776543
No 36
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=3e-27 Score=223.27 Aligned_cols=164 Identities=25% Similarity=0.394 Sum_probs=144.2
Q ss_pred ccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 216 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
...++|||+|||.++++++|+++|+.||.+..+.+....+|+++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 4558899999999999999999999999877644444466789999999999999999999 599999999999999987
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHH
Q 006316 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375 (650)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A 375 (650)
.+... .....++|||+|||..+|+++|+++|++||.|..+ ..+|.++|||||+|.+.++|
T Consensus 90 ~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 90 GRDSK----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CSSCS----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHH
T ss_pred Ccccc----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHH
Confidence 64221 12245689999999999999999999999988777 56789999999999999999
Q ss_pred HHHHHHhCCceecCeeEEEEecchh
Q 006316 376 SKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 376 ~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
.+|+..|||..++|+.|.|.++.++
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999999765
No 37
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=1.7e-26 Score=217.42 Aligned_cols=157 Identities=23% Similarity=0.462 Sum_probs=141.9
Q ss_pred ccceeccCCCCCCCHHHHHHHhccc----C-------ceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCC
Q 006316 218 FNNVYVKNLSETTTEDDLKKIFGEF----G-------IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286 (650)
Q Consensus 218 ~~~l~V~nlp~~~t~e~l~~~F~~~----G-------~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g 286 (650)
.++|||+|||.++++++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+.|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 4789999999999999999999999 6 67777665 45899999999999999999 899999999
Q ss_pred eeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceE
Q 006316 287 KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365 (650)
Q Consensus 287 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~ 365 (650)
+.+.+.++..... ....++|||+|||..+|+++|+++|++||.|.++++..+. +|.++|||
T Consensus 78 ~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~a 139 (172)
T 2g4b_A 78 QSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 139 (172)
T ss_dssp EECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEE
T ss_pred ceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEE
Confidence 9999988754311 1236789999999999999999999999999999999996 89999999
Q ss_pred EEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 366 fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
||+|.+.++|.+|++.|||..++|+.|.|.+|.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999999999999873
No 38
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=8.8e-27 Score=224.77 Aligned_cols=157 Identities=24% Similarity=0.303 Sum_probs=140.5
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 39 STSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 39 ~~~L~V~nLp~-~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
+++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.||+..|.|++|+|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999999874 5799999999999999999999999999999999876
Q ss_pred cCcccc---------------------------------cCCCceeEecCCCcccchHHHHhhhcccC-ceeEEEEeeCC
Q 006316 118 RDPTIR---------------------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKVATDS 163 (650)
Q Consensus 118 ~~~~~~---------------------------------~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G-~I~~~~v~~d~ 163 (650)
...... ....++|||+|||.++++++|+++|+.|| .|.+|++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 431100 11256799999999999999999999999 9999998764
Q ss_pred CCCcccEEEEEECCHHHHHHHHHhhCCceec-CeeeEEcccc
Q 006316 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFL 204 (650)
Q Consensus 164 ~g~skg~afV~F~~~e~A~~Ai~~lng~~i~-g~~l~v~~~~ 204 (650)
++|||||+|.+.++|.+|++.|||..+. |+.|.|.++.
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4789999999999999999999999999 9999997764
No 39
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=6e-26 Score=218.75 Aligned_cols=178 Identities=21% Similarity=0.392 Sum_probs=145.9
Q ss_pred ccceeccCCCCCCCHHHHHHHhccc----C-------ceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCC
Q 006316 218 FNNVYVKNLSETTTEDDLKKIFGEF----G-------IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286 (650)
Q Consensus 218 ~~~l~V~nlp~~~t~e~l~~~F~~~----G-------~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g 286 (650)
.++|||+|||.++++++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+.|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 4789999999999999999999999 4 55555553 56899999999999999999 899999999
Q ss_pred eeEEEecchhhhHHHHHHhh--hhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcc
Q 006316 287 KEWYVGKAQKKYEREMELKG--KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRG 363 (650)
Q Consensus 287 ~~l~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g 363 (650)
+.|.|.++............ ...............++|||+|||..+++++|+++|++||.|.++++..+. +|.++|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999988654211000000 000000011122456899999999999999999999999999999999986 899999
Q ss_pred eEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhH
Q 006316 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 364 ~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
||||+|.+.++|.+|++.|||..++|+.|.|.++.++.
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999997653
No 40
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=2.5e-25 Score=224.13 Aligned_cols=157 Identities=29% Similarity=0.511 Sum_probs=144.3
Q ss_pred ccccceeccCCCCCCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecch
Q 006316 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (650)
Q Consensus 216 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 295 (650)
...++|||+|||.++++++|+++|+.||.|.++.+.+ ++|||||+|.+.++|.+|+..+++..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 4557899999999999999999999999999999864 47899999999999999999999999999999998875
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHH
Q 006316 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375 (650)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A 375 (650)
. +++|||+||+..+|+++|+++|+.||.|++|+++.+.+|.++|||||+|.+.++|
T Consensus 95 ~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 95 H------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp C------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred c------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 3 4689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-Cceec---CeeEEEEecchhH
Q 006316 376 SKALTEMN-GKMVV---SKPLYVALAQRKE 401 (650)
Q Consensus 376 ~~A~~~l~-~~~~~---g~~l~V~~a~~~~ 401 (650)
.+|+..|| +..+. +++|.|.++...+
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 99999995 55554 9999999987653
No 41
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=1.3e-25 Score=221.70 Aligned_cols=177 Identities=21% Similarity=0.316 Sum_probs=145.9
Q ss_pred ccccceeccCCCC-CCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecc
Q 006316 216 TRFNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (650)
Q Consensus 216 ~~~~~l~V~nlp~-~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 294 (650)
...++|||+|||. ++++++|+++|++||.|.++.++.+. +|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3457899999999 99999999999999999999999874 789999999999999999999999999999999988
Q ss_pred hhhhHH-------HHHHhhhhhhh----------hhhhhhccCCceeEEecCCCCCCHHHHHHHHhhcC-CeEEEEEeeC
Q 006316 295 QKKYER-------EMELKGKFEQS----------LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRD 356 (650)
Q Consensus 295 ~~~~~~-------~~~~~~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~~ 356 (650)
..+... .......+... ........++++|||+||+..+++++|+++|++|| .|.+++++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 643110 00000000000 00001123468899999999999999999999999 9999999764
Q ss_pred CCCCCcceEEEEcCCHHHHHHHHHHhCCceec-CeeEEEEecchh
Q 006316 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQRK 400 (650)
Q Consensus 357 ~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~V~~a~~~ 400 (650)
++|||||+|.+.++|.+|++.|||..++ |+.|.|.|++++
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 4789999999999999999999999999 999999998753
No 42
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=1.5e-25 Score=216.09 Aligned_cols=175 Identities=22% Similarity=0.309 Sum_probs=144.0
Q ss_pred ccceeccCCCC-CCCHHHHHHHhcccCceeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchh
Q 006316 218 FNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (650)
Q Consensus 218 ~~~l~V~nlp~-~~t~e~l~~~F~~~G~i~~~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 296 (650)
.++|||+|||. .+++++|+++|++||.|.++.++.+. +|||||+|.+.++|.+|++.+++..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 47899999999 99999999999999999999998764 78999999999999999999999999999999998864
Q ss_pred hhHHHHH-------Hhhhhhhhh----------hhhhhccCCceeEEecCCCCCCHHHHHHHHhhcC-CeEEEEEeeCCC
Q 006316 297 KYEREME-------LKGKFEQSL----------KETADKFEGLNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRDPN 358 (650)
Q Consensus 297 ~~~~~~~-------~~~~~~~~~----------~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~ 358 (650)
+...... ....+.... .......++++|||+||+..+++++|+++|++|| .|.+++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 3211000 000000000 0000123467899999999999999999999999 9999999875
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHhCCceec-CeeEEEEecchh
Q 006316 359 GISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQRK 400 (650)
Q Consensus 359 g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~V~~a~~~ 400 (650)
++|||||+|.+.++|.+|+..|||+.++ |+.|.|.|++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999998753
No 43
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=2.5e-20 Score=172.62 Aligned_cols=148 Identities=22% Similarity=0.287 Sum_probs=112.7
Q ss_pred EEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEe
Q 006316 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327 (650)
Q Consensus 248 ~~v~~~~~g~srg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 327 (650)
+.++.+.. +++||+||+|.+.++|++|+..+++....+..+.+.......... ...............++|||+
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT-----EGSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE-----CCCCCSSCCCCCCBCCEEEEE
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc-----ccccccccccCCCCCCEEEEe
Confidence 45555533 689999999999999999999888654443333333222110000 000000111123456799999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhH
Q 006316 328 NLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 328 nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
||+.++|+++|+++|+.||.|++|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++.+.
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999999986 79999999999999999999999999999999999999997653
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=2.1e-20 Score=163.10 Aligned_cols=103 Identities=28% Similarity=0.496 Sum_probs=74.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~ 118 (650)
+++|||+|||+++||++|+++|+.||.|.+|+|++|. +.++|||||+|.+.++|++|++.||+..|+|++|+|.|+..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999995 45899999999999999999999999999999999998765
Q ss_pred Ccc------cccCCCceeEecCCCcccchHH
Q 006316 119 DPT------IRKSGAGNIFIKNLDKSIDNKA 143 (650)
Q Consensus 119 ~~~------~~~~~~~~l~V~nLp~~i~~~~ 143 (650)
... .+....++|||+|||+++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 432 1223446899999999998764
No 45
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=1.5e-19 Score=167.29 Aligned_cols=138 Identities=17% Similarity=0.279 Sum_probs=111.2
Q ss_pred EEEEEeeCCCCccccEEEEEecchhHHHHHcccccCcc-CCC------Cccccccccc----CcccccCCCceeEecCCC
Q 006316 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNG------KPIRIMYSYR----DPTIRKSGAGNIFIKNLD 136 (650)
Q Consensus 68 ~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~-i~g------~~i~v~~s~~----~~~~~~~~~~~l~V~nLp 136 (650)
++++.++.. +++|||||+|.+.++|++|++.+++.. +.| .......... .........++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 567888754 699999999999999999998877432 222 2222221111 111223346789999999
Q ss_pred cccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccccc
Q 006316 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207 (650)
Q Consensus 137 ~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 207 (650)
.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++..+.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999998 589999999999999999999999999999999999998876543
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=153.07 Aligned_cols=82 Identities=38% Similarity=0.606 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..+.++|||+|||.++||++|+++|++||+|.+|++.+|+.|++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 006316 116 SY 117 (650)
Q Consensus 116 s~ 117 (650)
+.
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 85
No 47
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=150.33 Aligned_cols=83 Identities=39% Similarity=0.628 Sum_probs=78.4
Q ss_pred hccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
..+++++|||+|||.++|+++|+++|++||.|+++++++++ +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999999999999986 69999999999999999999999999999999999999
Q ss_pred ecch
Q 006316 396 LAQR 399 (650)
Q Consensus 396 ~a~~ 399 (650)
+|++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9964
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=2.2e-19 Score=156.59 Aligned_cols=108 Identities=61% Similarity=0.994 Sum_probs=75.6
Q ss_pred CCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccc
Q 006316 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205 (650)
Q Consensus 126 ~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 205 (650)
+.++|||+|||.++++++|+++|+.||.|.+|++..+.. .++|||||+|++.++|.+|++.|||..|.|+.|.|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 567899999999999999999999999999999999854 4899999999999999999999999999999999998876
Q ss_pred cccccccc--ccccccceeccCCCCCCCHHH
Q 006316 206 KQERESTA--DKTRFNNVYVKNLSETTTEDD 234 (650)
Q Consensus 206 ~~~~~~~~--~~~~~~~l~V~nlp~~~t~e~ 234 (650)
+..+.... .....++|||+||+.++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 65543322 234567899999999998864
No 49
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=2e-19 Score=164.97 Aligned_cols=137 Identities=21% Similarity=0.306 Sum_probs=112.8
Q ss_pred CcceeEEEEeCChhhHHHHHHHH-cCCccCCeeEEEecchhhhHHHHHHhhhhhhhhhhhhhccCCceeEEecCCCCCCH
Q 006316 257 KSKCFGFVNFDDPDDAARSVEAL-NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335 (650)
Q Consensus 257 ~srg~afV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 335 (650)
+.+|+++|+|.+.++|++|++.+ |+..++| .|.+.++.++........ ..............++|||+|||+++|+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH--HHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS--SCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc--cccccccccCCCCCCEEEEeCCCCCCCH
Confidence 56899999999999999999999 9999999 999988865432100000 0000011222345689999999999999
Q ss_pred HHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchh
Q 006316 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 336 ~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
++|+++|++||.|++|+++.+ ++|||||+|.+.++|.+|+..|||..++|++|.|.+++++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999987 6899999999999999999999999999999999998764
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=4.3e-18 Score=146.73 Aligned_cols=88 Identities=15% Similarity=0.289 Sum_probs=82.1
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
.+.++|||+||++++++++|+++|++||.|++|+|+.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999987 5999999999999999999999999999999999999999
Q ss_pred chhHHHHHh
Q 006316 398 QRKEERRAR 406 (650)
Q Consensus 398 ~~~~~r~~~ 406 (650)
..++.++..
T Consensus 84 ~~~~~~~~~ 92 (110)
T 3s8s_A 84 IKGQQRMKY 92 (110)
T ss_dssp STTHHHHHH
T ss_pred CCCcHHHHH
Confidence 887776554
No 51
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=1.4e-18 Score=159.20 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=110.7
Q ss_pred CCccccEEEEEecchhHHHHHcccc-cCccCCCCcccccccccC--------------cccccCCCceeEecCCCcccch
Q 006316 77 TRRSLGYGYVNYNAAHEATRALDEL-NFTPLNGKPIRIMYSYRD--------------PTIRKSGAGNIFIKNLDKSIDN 141 (650)
Q Consensus 77 t~~s~G~a~V~F~~~~~A~~Al~~l-n~~~i~g~~i~v~~s~~~--------------~~~~~~~~~~l~V~nLp~~i~~ 141 (650)
....+|+++|+|.+.++|++|++.+ |+..+.| .+++.++... ........++|||+|||.++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 4567899999999999999999999 9999999 9999886542 1223345689999999999999
Q ss_pred HHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEcccccc
Q 006316 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 142 ~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 206 (650)
++|+++|+.||.|.+|.+..+ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..+
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999876 6899999999999999999999999999999999876543
No 52
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=147.77 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.++|||+|||+++||++|+++|++||.|.+|+|.+|..|++|+|||||.|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccC
Q 006316 117 YRD 119 (650)
Q Consensus 117 ~~~ 119 (650)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 53
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=143.29 Aligned_cols=89 Identities=30% Similarity=0.515 Sum_probs=82.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccccCcccc
Q 006316 115 YSYRDPTIR 123 (650)
Q Consensus 115 ~s~~~~~~~ 123 (650)
|+.......
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 987765443
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-18 Score=144.84 Aligned_cols=83 Identities=16% Similarity=0.324 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCC--EEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCc----cCCCC
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT----PLNGK 109 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~--V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~----~i~g~ 109 (650)
.....+|||+|||+++||++|+++|++||. |.+|++++|+.|++|+|||||+|.+.++|++|++.||+. .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456789999999999999999999999994 779999999999999999999999999999999999986 48999
Q ss_pred ccccccccc
Q 006316 110 PIRIMYSYR 118 (650)
Q Consensus 110 ~i~v~~s~~ 118 (650)
+|+|.|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 55
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=9.8e-19 Score=145.49 Aligned_cols=83 Identities=22% Similarity=0.381 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccc-cCccCCCCccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL-NFTPLNGKPIRIMYS 116 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~l-n~~~i~g~~i~v~~s 116 (650)
|.+|||+|||.++||++|+++|++|| .|.+|++++|+.|++++|||||+|.+.++|++|++.+ ++..|+|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 8999999999999999999999999999999999877 456799999999998
Q ss_pred ccCcc
Q 006316 117 YRDPT 121 (650)
Q Consensus 117 ~~~~~ 121 (650)
...+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.9e-18 Score=143.44 Aligned_cols=89 Identities=27% Similarity=0.483 Sum_probs=82.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....+.++|||+|||.++|+++|+++|+.||.|.+|+++++..+++++|||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccc
Q 006316 114 MYSYRDPTI 122 (650)
Q Consensus 114 ~~s~~~~~~ 122 (650)
.|+......
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 998766543
No 57
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=139.88 Aligned_cols=85 Identities=31% Similarity=0.560 Sum_probs=80.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.++++|||+|||.++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|+|++|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCcc
Q 006316 117 YRDPT 121 (650)
Q Consensus 117 ~~~~~ 121 (650)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76544
No 58
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.8e-18 Score=141.52 Aligned_cols=86 Identities=24% Similarity=0.454 Sum_probs=79.9
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
+.....+.++|||+|||.++++++|+++|++||+|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|++|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 33444567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 006316 112 RIMYSY 117 (650)
Q Consensus 112 ~v~~s~ 117 (650)
+|.|++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 998863
No 59
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=140.59 Aligned_cols=87 Identities=18% Similarity=0.447 Sum_probs=80.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++ ||+..|+|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccccCccc
Q 006316 115 YSYRDPTI 122 (650)
Q Consensus 115 ~s~~~~~~ 122 (650)
|+......
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 98765443
No 60
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=4.3e-18 Score=156.34 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G--~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..++|||+|||+++||++|+++|+.|| .|.+|++++|+.|++++|||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 006316 116 SYR 118 (650)
Q Consensus 116 s~~ 118 (650)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 754
No 61
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.5e-17 Score=145.70 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=78.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....+.++|||+|||.++|+++|+++|++||.|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 006316 114 MYSY 117 (650)
Q Consensus 114 ~~s~ 117 (650)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 8863
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=6.6e-18 Score=139.35 Aligned_cols=83 Identities=27% Similarity=0.508 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.++|||+|||.++++++|+++|++||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccC
Q 006316 117 YRD 119 (650)
Q Consensus 117 ~~~ 119 (650)
...
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=140.40 Aligned_cols=87 Identities=25% Similarity=0.386 Sum_probs=81.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
......++++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|+|++|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 006316 112 RIMYSYR 118 (650)
Q Consensus 112 ~v~~s~~ 118 (650)
+|.|+..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9998763
No 64
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=141.49 Aligned_cols=86 Identities=27% Similarity=0.490 Sum_probs=80.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEE-EEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCc--
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP-- 110 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~-~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~-- 110 (650)
....++++|||+|||.+++|++|+++|++||.|. +|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3456789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred --ccccccccC
Q 006316 111 --IRIMYSYRD 119 (650)
Q Consensus 111 --i~v~~s~~~ 119 (650)
|+|.|+...
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999988654
No 65
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=140.75 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=81.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..++++|||+|||.++|+++|+++|+.||+|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCccc
Q 006316 116 SYRDPTI 122 (650)
Q Consensus 116 s~~~~~~ 122 (650)
+......
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 8876554
No 66
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=9e-18 Score=146.45 Aligned_cols=105 Identities=21% Similarity=0.415 Sum_probs=94.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
+.++++|||+|||.++|+++|+++|+.||.|.+|++.++ +.++|||||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999976 45689999999999999999999999999999999999
Q ss_pred cccCcccccCCCceeEecCCCcccchHHHHhhhcccCc
Q 006316 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153 (650)
Q Consensus 116 s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~ 153 (650)
+...... ++++...++++|.++|+.||-
T Consensus 82 a~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 8755432 678889999999999999984
No 67
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=2.3e-17 Score=143.87 Aligned_cols=89 Identities=26% Similarity=0.501 Sum_probs=82.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccccCcccc
Q 006316 115 YSYRDPTIR 123 (650)
Q Consensus 115 ~s~~~~~~~ 123 (650)
|+...+...
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 987665443
No 68
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=141.20 Aligned_cols=86 Identities=20% Similarity=0.328 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|+.||.|.+|++.++..|++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCc
Q 006316 115 YSYRDP 120 (650)
Q Consensus 115 ~s~~~~ 120 (650)
|+....
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 987654
No 69
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=141.81 Aligned_cols=88 Identities=16% Similarity=0.346 Sum_probs=82.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....++++|||+|||.++|+++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcc
Q 006316 114 MYSYRDPT 121 (650)
Q Consensus 114 ~~s~~~~~ 121 (650)
.|+.....
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99876543
No 70
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-17 Score=146.69 Aligned_cols=87 Identities=28% Similarity=0.432 Sum_probs=81.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
.....++|||+|||.++||++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
|+.....
T Consensus 118 ~a~~~~~ 124 (139)
T 1u6f_A 118 LAASGHQ 124 (139)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 71
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=1.1e-17 Score=137.37 Aligned_cols=82 Identities=28% Similarity=0.503 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..+.++|||+|||.++++++|+++|++||.|.+|++.+|..+++++|||||+|.+.++|++|++.||+..|+|++|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 006316 116 SY 117 (650)
Q Consensus 116 s~ 117 (650)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 72
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=1.7e-17 Score=135.60 Aligned_cols=81 Identities=33% Similarity=0.625 Sum_probs=77.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~ 118 (650)
+.+|||+|||.++++++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|++|+|.|+..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 006316 119 D 119 (650)
Q Consensus 119 ~ 119 (650)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=140.49 Aligned_cols=83 Identities=29% Similarity=0.556 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.++++|||+|||.++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 006316 117 YRD 119 (650)
Q Consensus 117 ~~~ 119 (650)
...
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 754
No 74
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=2.5e-17 Score=143.61 Aligned_cols=85 Identities=24% Similarity=0.360 Sum_probs=80.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccCcc
Q 006316 117 YRDPT 121 (650)
Q Consensus 117 ~~~~~ 121 (650)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 76544
No 75
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=2.4e-17 Score=146.47 Aligned_cols=87 Identities=26% Similarity=0.426 Sum_probs=81.6
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
.....++++|||+|||.++|+++|+++|++||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|+|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccC
Q 006316 113 IMYSYRD 119 (650)
Q Consensus 113 v~~s~~~ 119 (650)
|.|+..+
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9998754
No 76
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=141.38 Aligned_cols=85 Identities=25% Similarity=0.405 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...++++|||+|||.++|+++|+++|+.||.|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 006316 115 YSYRD 119 (650)
Q Consensus 115 ~s~~~ 119 (650)
|+...
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98754
No 77
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=8.5e-18 Score=139.65 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G--~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
.+|||+|||.++||++|+++|+.|| .|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred cCcc
Q 006316 118 RDPT 121 (650)
Q Consensus 118 ~~~~ 121 (650)
..+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 78
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=142.36 Aligned_cols=88 Identities=26% Similarity=0.444 Sum_probs=81.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....+.++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcc
Q 006316 114 MYSYRDPT 121 (650)
Q Consensus 114 ~~s~~~~~ 121 (650)
.|+.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 2cqb_A 87 NLAKPMRI 94 (102)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99876543
No 79
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=138.84 Aligned_cols=83 Identities=28% Similarity=0.549 Sum_probs=77.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....+.++|||+|||+++++++|+++|++||+|.+|++.++.. ++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3345679999999999999999999999999999999999965 899999999999999999999999999999999999
Q ss_pred cccc
Q 006316 114 MYSY 117 (650)
Q Consensus 114 ~~s~ 117 (650)
.|+.
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9875
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=139.76 Aligned_cols=89 Identities=25% Similarity=0.371 Sum_probs=81.6
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++. |+..|+|+.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 33455679999999999999999999999999999999999999999999999999999999999988 99999999999
Q ss_pred ccccccCccc
Q 006316 113 IMYSYRDPTI 122 (650)
Q Consensus 113 v~~s~~~~~~ 122 (650)
|.|+......
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9998765443
No 81
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=1.8e-17 Score=139.54 Aligned_cols=83 Identities=24% Similarity=0.449 Sum_probs=79.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
++++|||+|||.++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|+|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCc
Q 006316 118 RDP 120 (650)
Q Consensus 118 ~~~ 120 (650)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 82
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=140.05 Aligned_cols=87 Identities=21% Similarity=0.487 Sum_probs=81.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEee-CCCCccccEEEEEecchhHHHHHcccc-cCccCCCCcccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-LSTRRSLGYGYVNYNAAHEATRALDEL-NFTPLNGKPIRI 113 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d-~~t~~s~G~a~V~F~~~~~A~~Al~~l-n~~~i~g~~i~v 113 (650)
..+.++|||+|||.++|+++|+++|+.||.|.+|+++++ ..+++++|||||+|.+.++|++|++.| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456799999999999999999999999999999999999 789999999999999999999999999 899999999999
Q ss_pred cccccCccc
Q 006316 114 MYSYRDPTI 122 (650)
Q Consensus 114 ~~s~~~~~~ 122 (650)
.|+......
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 998776543
No 83
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=141.84 Aligned_cols=87 Identities=25% Similarity=0.428 Sum_probs=80.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
.....+.++|||+|||.++||++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.+++ .|.|++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 33445679999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred ccccccCc
Q 006316 113 IMYSYRDP 120 (650)
Q Consensus 113 v~~s~~~~ 120 (650)
|.|+....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99987653
No 84
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=139.32 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=73.9
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcC-CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhC-CceecCeeEEEEecc
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMN-GKMVVSKPLYVALAQ 398 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~-~~~~~g~~l~V~~a~ 398 (650)
.+|||+|||.++|+++|+++|++|| .|++|+|++++ +|.++|||||+|.+.++|.+|++.++ +..++|+.|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999886 68999999999999999999999875 567999999999998
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
++.
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 85
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=6.9e-17 Score=138.34 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCC---Cccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG---KPIR 112 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g---~~i~ 112 (650)
..+.++|||+|||.++|+++|+++|+.||.|.+|++.++. +++++|||||+|.+.++|++|++.||+..|.| ++|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457999999999999999999999999999999999997 79999999999999999999999999999998 9999
Q ss_pred ccccccCcc
Q 006316 113 IMYSYRDPT 121 (650)
Q Consensus 113 v~~s~~~~~ 121 (650)
|.|+...+.
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999876654
No 86
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=138.71 Aligned_cols=87 Identities=29% Similarity=0.528 Sum_probs=80.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++.++ +++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344457899999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred ccccccCcc
Q 006316 113 IMYSYRDPT 121 (650)
Q Consensus 113 v~~s~~~~~ 121 (650)
|.|+.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999876544
No 87
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-17 Score=139.69 Aligned_cols=85 Identities=26% Similarity=0.604 Sum_probs=80.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEE-EEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i-~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
.++++|||+|||.++|+++|+++|+.||.|.+| ++++|+.+++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cccCcc
Q 006316 116 SYRDPT 121 (650)
Q Consensus 116 s~~~~~ 121 (650)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 876543
No 88
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=138.20 Aligned_cols=81 Identities=21% Similarity=0.381 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCC
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~--------i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g 108 (650)
.+.++|||+|||.++|+++|+++|++||.|.+ |++.+|+.+++++|||||+|.+.++|++|++.||+..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45689999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred Ccccccccc
Q 006316 109 KPIRIMYSY 117 (650)
Q Consensus 109 ~~i~v~~s~ 117 (650)
+.|+|.|+.
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999998863
No 89
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=6.2e-17 Score=130.02 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=71.7
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
.+..|||+||++.+||++|+++|.+||.|.++++.. ++|||||+|.+.++|.+|++.||+..++|++|+|.+|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 456899999999999999999999999999999865 689999999999999999999999999999999999964
Q ss_pred hH
Q 006316 400 KE 401 (650)
Q Consensus 400 ~~ 401 (650)
.+
T Consensus 81 ~~ 82 (89)
T 2wbr_A 81 NE 82 (89)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 90
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=6.9e-17 Score=137.82 Aligned_cols=86 Identities=21% Similarity=0.367 Sum_probs=79.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....+.++|||+|||.++|+++|+++|+.|| |.+|++++|+.|++++|||||+|.+.++|++|+ .||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445679999999999999999999999997 999999999999999999999999999999999 89999999999999
Q ss_pred cccccCcc
Q 006316 114 MYSYRDPT 121 (650)
Q Consensus 114 ~~s~~~~~ 121 (650)
.|+.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99876544
No 91
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.1e-17 Score=137.81 Aligned_cols=85 Identities=19% Similarity=0.393 Sum_probs=79.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|+.||.|.+|++.++. +++++|||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ccccCc
Q 006316 115 YSYRDP 120 (650)
Q Consensus 115 ~s~~~~ 120 (650)
|+...+
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 987553
No 92
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=138.46 Aligned_cols=86 Identities=33% Similarity=0.475 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhc-CCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCcc-CCCCccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNGKPIR 112 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~-~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~-i~g~~i~ 112 (650)
...++++|||+|||.++|+++|+++|+. ||.|.+|++++|. +++++|||||+|.+.++|++|++.||+.. |.|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456799999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred ccccccCcc
Q 006316 113 IMYSYRDPT 121 (650)
Q Consensus 113 v~~s~~~~~ 121 (650)
|.|+.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999865543
No 93
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=136.38 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.++++|||+|||+++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.+++.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 006316 117 Y 117 (650)
Q Consensus 117 ~ 117 (650)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=138.57 Aligned_cols=85 Identities=24% Similarity=0.493 Sum_probs=79.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCC---CCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS---TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~---t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
.++++|||+|||.++|+++|+++|+.||.|.+|++.++.. |++++|||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999987 6799999999999999999999999999999999999
Q ss_pred cccccCcc
Q 006316 114 MYSYRDPT 121 (650)
Q Consensus 114 ~~s~~~~~ 121 (650)
.|+.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99876544
No 95
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=7e-17 Score=131.86 Aligned_cols=81 Identities=35% Similarity=0.634 Sum_probs=76.5
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
+++|||+|||.++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3589999999999999999999999999999999884 789999999999999999999999999999999999999987
Q ss_pred hH
Q 006316 400 KE 401 (650)
Q Consensus 400 ~~ 401 (650)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 96
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=138.50 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=73.5
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCC--eEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCc----eecCeeE
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGT--ITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK----MVVSKPL 392 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~--i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~----~~~g~~l 392 (650)
...+|||+||++++|+++|+++|++||. |.+|++++|+ +|++||||||+|.+.++|.+|++.|||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3458999999999999999999999995 6789999887 6899999999999999999999999997 5899999
Q ss_pred EEEecch
Q 006316 393 YVALAQR 399 (650)
Q Consensus 393 ~V~~a~~ 399 (650)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 97
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.5e-17 Score=139.99 Aligned_cols=86 Identities=16% Similarity=0.325 Sum_probs=80.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHccccc------CccCCCC
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN------FTPLNGK 109 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln------~~~i~g~ 109 (650)
..+.++|||+|||.++|+++|+++|+.||.|.+|++.+|+.+++++|||||+|.+.++|++|++.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3467899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccccccccCcc
Q 006316 110 PIRIMYSYRDPT 121 (650)
Q Consensus 110 ~i~v~~s~~~~~ 121 (650)
.|+|.|+.....
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999876543
No 98
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=131.96 Aligned_cols=81 Identities=28% Similarity=0.547 Sum_probs=75.4
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..++|||+|||.++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46789999999999999999999999999999999985 88999999999999999999999999999999999999997
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 99
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.4e-17 Score=137.88 Aligned_cols=86 Identities=23% Similarity=0.417 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCC-CccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t-~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
...+.++|||+|||.++|+++|+++|+.|| |.+|++.++..+ ++++|||||+|.+.++|++|+ .||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 999999999888 999999999999999999999 99999999999999
Q ss_pred cccccCccc
Q 006316 114 MYSYRDPTI 122 (650)
Q Consensus 114 ~~s~~~~~~ 122 (650)
.++......
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 998766543
No 100
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=5.3e-17 Score=139.30 Aligned_cols=86 Identities=19% Similarity=0.369 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccC---CCCccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL---NGKPIR 112 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i---~g~~i~ 112 (650)
..+.++|||+|||.++||++|+++|++||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999887 899999
Q ss_pred ccccccCcc
Q 006316 113 IMYSYRDPT 121 (650)
Q Consensus 113 v~~s~~~~~ 121 (650)
|.|+.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999876543
No 101
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.7e-17 Score=137.17 Aligned_cols=86 Identities=22% Similarity=0.401 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|+.||.|.+|++++|.. .++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345679999999999999999999999999999999999854 378999999999999999999999999999999999
Q ss_pred ccccCccc
Q 006316 115 YSYRDPTI 122 (650)
Q Consensus 115 ~s~~~~~~ 122 (650)
|+......
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 98765443
No 102
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=7e-17 Score=150.30 Aligned_cols=139 Identities=19% Similarity=0.336 Sum_probs=79.1
Q ss_pred EEeCChhhHHHHHHHHcCCccC--CeeEEEecchhhhHHHHHHhhh---hhh-hhhhhhhccCCceeEEecCCCCCCHHH
Q 006316 264 VNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMELKGK---FEQ-SLKETADKFEGLNLYVKNLDDSISDDK 337 (650)
Q Consensus 264 V~f~~~~~A~~Ai~~l~g~~~~--g~~l~v~~a~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~l~V~nl~~~~t~~~ 337 (650)
.+|++.++|..++..+++.... |+.....+... .+....... ... ..........+++|||+||+..+|+++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTR--EAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccc--ccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 6788889999999888876544 33333332211 110000000 000 011112234567899999999999999
Q ss_pred HHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHHHH
Q 006316 338 LKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404 (650)
Q Consensus 338 l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~r~ 404 (650)
|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..+..++
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999999885 88999999999999999999999999999999999999998766543
No 103
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=1.2e-16 Score=133.34 Aligned_cols=82 Identities=23% Similarity=0.338 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.++|||+|||.++++++|+++|++||.|.+|++.++ +++++|||||+|.+.++|++|++.||+..|+|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999985 7899999999999999999999999999999999999998
Q ss_pred ccCc
Q 006316 117 YRDP 120 (650)
Q Consensus 117 ~~~~ 120 (650)
....
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7654
No 104
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=4.1e-17 Score=141.02 Aligned_cols=86 Identities=21% Similarity=0.364 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...++++|||+|||.++|+++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCc
Q 006316 115 YSYRDP 120 (650)
Q Consensus 115 ~s~~~~ 120 (650)
|+...+
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987553
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=139.44 Aligned_cols=92 Identities=23% Similarity=0.416 Sum_probs=81.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccccC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~ 119 (650)
++|||+|||.++|+++|+++|++||+|.+|++.++ ++|||||+|.+.++|++|++.||+..|.|+.|+|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 6789999999999999999999999999999999998665
Q ss_pred ccc--------ccCCCceeEecCCC
Q 006316 120 PTI--------RKSGAGNIFIKNLD 136 (650)
Q Consensus 120 ~~~--------~~~~~~~l~V~nLp 136 (650)
+.. +.....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 422 12235679999986
No 106
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=4.7e-17 Score=159.45 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=79.3
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcC--CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
..++|||+||++++|+++|+++|++|| .|++|+|+.++ +|+++|||||+|.+.++|.+||+.||++.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 99999999996 899999999999999999999999999999999999999
Q ss_pred cchhHHHHH
Q 006316 397 AQRKEERRA 405 (650)
Q Consensus 397 a~~~~~r~~ 405 (650)
++++.....
T Consensus 147 a~~~~~~~~ 155 (229)
T 3q2s_C 147 VNKQFLSQF 155 (229)
T ss_dssp CCHHHHHHH
T ss_pred CCCCccchh
Confidence 988765543
No 107
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=7.4e-17 Score=133.02 Aligned_cols=80 Identities=26% Similarity=0.470 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..+.++|||+|||+++|+++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++. ++..|+|+.|+|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 35679999999999999999999999999999999999999999999999999999999999955 77789999999976
Q ss_pred c
Q 006316 116 S 116 (650)
Q Consensus 116 s 116 (650)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=9.4e-17 Score=139.97 Aligned_cols=83 Identities=23% Similarity=0.459 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.++|||+|||.++|+++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.||+..|+|+.|+|.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999997 8999999999999999999999999999999999999998
Q ss_pred ccCc
Q 006316 117 YRDP 120 (650)
Q Consensus 117 ~~~~ 120 (650)
....
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7543
No 109
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.5e-17 Score=137.09 Aligned_cols=80 Identities=14% Similarity=0.271 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
...++|||+|||.++|+++|.++|+.||+|.+|++.+|.. ++++|||||+|.+.++|++|++ +++..|+|+.|+|.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999999976 9999999999999999999998 8999999999999986
Q ss_pred cc
Q 006316 117 YR 118 (650)
Q Consensus 117 ~~ 118 (650)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 110
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=3.2e-17 Score=138.95 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCC-Cc
Q 006316 38 VSTSLYVGDLDL------SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG-KP 110 (650)
Q Consensus 38 ~~~~L~V~nLp~------~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g-~~ 110 (650)
.+++|||+|||. ++++++|+++|++||.|.+|++++|..|++++|||||+|.+.++|++|++.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccccccc
Q 006316 111 IRIMYSYR 118 (650)
Q Consensus 111 i~v~~s~~ 118 (650)
|+|.|+..
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99998754
No 111
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=134.89 Aligned_cols=83 Identities=22% Similarity=0.446 Sum_probs=78.8
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+|||.++|+++|+++|++||.|++++++.+.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
++.
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 112
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.5e-17 Score=136.08 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccC--ccCCCCccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF--TPLNGKPIRIM 114 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~--~~i~g~~i~v~ 114 (650)
.++++|||+|||+++||++|+++|++||.|++|+|+++ +|||||+|.+.++|++|++.|++ ..|.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999999975 48999999999999999998764 67999999999
Q ss_pred ccccCccc
Q 006316 115 YSYRDPTI 122 (650)
Q Consensus 115 ~s~~~~~~ 122 (650)
|+......
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99765443
No 113
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=9.5e-17 Score=132.97 Aligned_cols=81 Identities=21% Similarity=0.430 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
..++|||+|||.++|+++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999999999989999999999999999999999 999999999999999886
Q ss_pred cC
Q 006316 118 RD 119 (650)
Q Consensus 118 ~~ 119 (650)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 114
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=1.8e-16 Score=133.38 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=77.6
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
+++|||+||+.++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5789999999999999999999999999999999886 689999999999999999999999999999999999999987
Q ss_pred hHH
Q 006316 400 KEE 402 (650)
Q Consensus 400 ~~~ 402 (650)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 115
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=5.5e-17 Score=137.53 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=78.6
Q ss_pred CCceeEEecCCC------CCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecC-ee
Q 006316 320 EGLNLYVKNLDD------SISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KP 391 (650)
Q Consensus 320 ~~~~l~V~nl~~------~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g-~~ 391 (650)
.+++|||+|||. ++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356899999999 99999999999999999999999887 49999999999999999999999999999999 99
Q ss_pred EEEEecchhHHH
Q 006316 392 LYVALAQRKEER 403 (650)
Q Consensus 392 l~V~~a~~~~~r 403 (650)
|+|.++.+++..
T Consensus 85 l~V~~a~~~~~~ 96 (100)
T 3ns6_A 85 LFLYTMKDVERY 96 (100)
T ss_dssp CEEEESHHHHHH
T ss_pred EEEEECchhhhh
Confidence 999999887653
No 116
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=4.2e-17 Score=135.45 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=71.3
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcC--CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
.+|||+||++++|+++|+++|++|| .|.+++++.++ +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999986 89999999999999999999999999999999999999987
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 117
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.5e-17 Score=136.08 Aligned_cols=80 Identities=16% Similarity=0.361 Sum_probs=73.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC--CceecCeeEEEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN--GKMVVSKPLYVA 395 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~--~~~~~g~~l~V~ 395 (650)
....++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.++ +..++|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456789999999999999999999999999999999975 7899999999999999999886 478999999999
Q ss_pred ecchhHH
Q 006316 396 LAQRKEE 402 (650)
Q Consensus 396 ~a~~~~~ 402 (650)
+++.+..
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9987653
No 118
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=135.16 Aligned_cols=84 Identities=30% Similarity=0.442 Sum_probs=79.2
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||.++|+++|+++|++||.|++++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456799999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred chhHH
Q 006316 398 QRKEE 402 (650)
Q Consensus 398 ~~~~~ 402 (650)
..+..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 87653
No 119
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=133.26 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=72.8
Q ss_pred hccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCce--ecCeeEEE
Q 006316 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM--VVSKPLYV 394 (650)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~--~~g~~l~V 394 (650)
...++++|||+|||+.+|+++|+++|++||.|+++++++ +||||||+|.+.++|.+|++.|++.. +.|++|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345678999999999999999999999999999999985 47899999999999999999999875 78999999
Q ss_pred EecchhH
Q 006316 395 ALAQRKE 401 (650)
Q Consensus 395 ~~a~~~~ 401 (650)
+|++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 120
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=5.6e-17 Score=130.29 Aligned_cols=73 Identities=25% Similarity=0.243 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.+|||+||++.+||++|+++|++||+|.++++.. ++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 478999999999999999999999999999999864 6799999999999999999999999999999999876
No 121
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=134.53 Aligned_cols=86 Identities=22% Similarity=0.420 Sum_probs=78.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....+.++|||+|||.++|+++|+++|+.||.|.+|++.++.. .++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3345679999999999999999999999999999999999854 38999999999999999999999999999999999
Q ss_pred cccccCcc
Q 006316 114 MYSYRDPT 121 (650)
Q Consensus 114 ~~s~~~~~ 121 (650)
.|+.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99876543
No 122
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=6.8e-17 Score=139.23 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.++|||+|||.++|+++|+++|+.||.|.+|++.+|..+++++|||||+|.+.++|++|++.++ ..|+|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEc
Confidence 456899999999999999999999999999999999999999999999999999999999998865 8899999999998
Q ss_pred ccCcc
Q 006316 117 YRDPT 121 (650)
Q Consensus 117 ~~~~~ 121 (650)
.....
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 75543
No 123
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=134.93 Aligned_cols=85 Identities=11% Similarity=0.228 Sum_probs=76.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
.......++|||+|||+++||++|+++|+.||.| +|++++|+ +++++|||||+|.+.++|++|+ .+|+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEE
Confidence 3445667999999999999999999999999965 99999997 8999999999999999999999 4799999999999
Q ss_pred ccccccCc
Q 006316 113 IMYSYRDP 120 (650)
Q Consensus 113 v~~s~~~~ 120 (650)
|.++....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 98876544
No 124
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=132.82 Aligned_cols=81 Identities=27% Similarity=0.474 Sum_probs=77.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+|||..+++++|+++|++||.|+++++..+.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 35578999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred h
Q 006316 399 R 399 (650)
Q Consensus 399 ~ 399 (650)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 125
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=1.9e-16 Score=129.85 Aligned_cols=80 Identities=33% Similarity=0.481 Sum_probs=75.6
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeC-CCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||.++++++|+++|++||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999999887 47889999999999999999999999999999999999997
Q ss_pred c
Q 006316 398 Q 398 (650)
Q Consensus 398 ~ 398 (650)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 126
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=5.6e-17 Score=129.70 Aligned_cols=75 Identities=21% Similarity=0.467 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
+|||+|||+++|+++|+++|++||+|.+|++.+++.+++++|||||+|.+.++|++|++ +|+..|+|++|+|.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999997 8999999999999874
No 127
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=8.3e-17 Score=143.71 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEE--EEEEeeCCCCccccEEEEEecchhHHHHHcccccCc----cCCCCc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS--VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT----PLNGKP 110 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~--i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~----~i~g~~ 110 (650)
...++|||+|||+++||++|+++|++||.|.+ |+|++|+.|++++|||||+|.+. +|.+|++.||+. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred ccccccccC
Q 006316 111 IRIMYSYRD 119 (650)
Q Consensus 111 i~v~~s~~~ 119 (650)
|+|.|+...
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999998654
No 128
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=134.52 Aligned_cols=86 Identities=20% Similarity=0.344 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++++++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|++|++. +..|+|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999974 568999999999
Q ss_pred ccccCccc
Q 006316 115 YSYRDPTI 122 (650)
Q Consensus 115 ~s~~~~~~ 122 (650)
|+......
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 98766443
No 129
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=9.5e-17 Score=137.45 Aligned_cols=84 Identities=33% Similarity=0.608 Sum_probs=79.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecC---eeEEEE
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS---KPLYVA 395 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g---~~l~V~ 395 (650)
...++|||+||+.++++++|+++|++||.|++|+|..+.+|.++|||||+|.+.++|.+|++.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred ecchhHH
Q 006316 396 LAQRKEE 402 (650)
Q Consensus 396 ~a~~~~~ 402 (650)
+++.+..
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987653
No 130
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.5e-17 Score=138.71 Aligned_cols=84 Identities=29% Similarity=0.527 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.++|||+|||.++++++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCc
Q 006316 117 YRDP 120 (650)
Q Consensus 117 ~~~~ 120 (650)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7653
No 131
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=134.95 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=78.0
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
..++|||+|||.++|+++|+++|++||.|.+|+++.+..|.++|||||+|.+.++|.+|+. +++..++|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4568999999999999999999999999999999999889999999999999999999999 899999999999999887
Q ss_pred hHHHH
Q 006316 400 KEERR 404 (650)
Q Consensus 400 ~~~r~ 404 (650)
-..++
T Consensus 89 ~~~~k 93 (103)
T 1s79_A 89 YFAKK 93 (103)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 132
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=9.6e-17 Score=134.00 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=72.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCcc--CCCC
Q 006316 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP--LNGK 109 (650)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~--i~g~ 109 (650)
+.....++++|||+|||.++||++|+++|++||.|++|++.+ ++|||||+|.+.++|.+|++.|++.. |.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 344556789999999999999999999999999999999985 35799999999999999999999775 7899
Q ss_pred cccccccccC
Q 006316 110 PIRIMYSYRD 119 (650)
Q Consensus 110 ~i~v~~s~~~ 119 (650)
+|+|.|+...
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999998754
No 133
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=132.25 Aligned_cols=82 Identities=34% Similarity=0.609 Sum_probs=77.4
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
.+++|||+||+.++++++|+++|++||.|.+++++.+. +++++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56799999999999999999999999999999999886 68999999999999999999999999999999999999997
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
.+.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 134
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.3e-17 Score=136.70 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
...++|||+|||.++++++|+++|+.||.|.+++++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccC
Q 006316 117 YRD 119 (650)
Q Consensus 117 ~~~ 119 (650)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 643
No 135
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-17 Score=137.61 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeC-CCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL-STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~-~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
...++|||+|||.++++++|+++|+.|| |.+|++.++. .+++++|||||+|.+.++|++|+ .||+..|+|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4569999999999999999999999999 9999999998 58999999999999999999999 8999999999999999
Q ss_pred cccC
Q 006316 116 SYRD 119 (650)
Q Consensus 116 s~~~ 119 (650)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8654
No 136
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=7.8e-17 Score=137.47 Aligned_cols=85 Identities=65% Similarity=1.014 Sum_probs=79.9
Q ss_pred hccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
.....++|||+||+..+|+++|+++|++||.|++|++..+ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457789999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cchhHH
Q 006316 397 AQRKEE 402 (650)
Q Consensus 397 a~~~~~ 402 (650)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987653
No 137
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=1.2e-16 Score=137.23 Aligned_cols=82 Identities=29% Similarity=0.492 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999999999999997 99999999999999999999999999999999999998
Q ss_pred ccc
Q 006316 115 YSY 117 (650)
Q Consensus 115 ~s~ 117 (650)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 138
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=136.83 Aligned_cols=85 Identities=25% Similarity=0.391 Sum_probs=78.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....++++|||+|||.++|+++|+++|+.||.|.+|++++++ +++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344567999999999999999999999999999999999996 6999999999999999999999999999999999999
Q ss_pred cccccC
Q 006316 114 MYSYRD 119 (650)
Q Consensus 114 ~~s~~~ 119 (650)
.|+...
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998644
No 139
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=138.55 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCC
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~--------~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~ 107 (650)
..+.++|||+|||.++|+++|+++|++||.|. .|++++|+.+++++|||||+|.+.++|++|++.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35679999999999999999999999999999 5999999999999999999999999999999999999999
Q ss_pred CCcccccccccCcc
Q 006316 108 GKPIRIMYSYRDPT 121 (650)
Q Consensus 108 g~~i~v~~s~~~~~ 121 (650)
|+.|+|.|+.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999876644
No 140
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=137.98 Aligned_cols=83 Identities=27% Similarity=0.469 Sum_probs=78.7
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+||+.++|+++|+++|++||.|++|++..+.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45679999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
.+.
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.8e-17 Score=130.30 Aligned_cols=76 Identities=26% Similarity=0.472 Sum_probs=73.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
++|||+|||.++++++|+++|++||+|.+|++.+++.+++++|||||+|.+.++|++|++.++ ..|+|++|+|.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999999 9999999999875
No 142
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=143.55 Aligned_cols=86 Identities=27% Similarity=0.478 Sum_probs=79.4
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCc
Q 006316 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (650)
Q Consensus 31 ~~~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~ 110 (650)
.......+.++|||+|||.++|+++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|++
T Consensus 55 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 55 GSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34444567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 006316 111 IRIMYS 116 (650)
Q Consensus 111 i~v~~s 116 (650)
|+|.|+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999874
No 143
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=8.9e-17 Score=132.81 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCc-cccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~-s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+++|||+|||.++|+++|+++|+.||.|.+|++.++..++. ++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 9999999999999999999999999999999999987
Q ss_pred ccC
Q 006316 117 YRD 119 (650)
Q Consensus 117 ~~~ 119 (650)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 144
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=137.03 Aligned_cols=82 Identities=34% Similarity=0.585 Sum_probs=78.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+||+.++++++|+++|++||.|++|+|+.+.+|+++|||||+|.+.++|.+|++.||+..++|+.|.|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45679999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 145
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-17 Score=138.69 Aligned_cols=83 Identities=24% Similarity=0.460 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|++||.|.+|++.+|. ++++|||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999984 3589999999999999999999999999999999999
Q ss_pred ccccC
Q 006316 115 YSYRD 119 (650)
Q Consensus 115 ~s~~~ 119 (650)
|+...
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98654
No 146
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=143.80 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=78.5
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcC--CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.|+ +|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 99999999986 899999999999999999999999999999999999999
Q ss_pred cchhHHHH
Q 006316 397 AQRKEERR 404 (650)
Q Consensus 397 a~~~~~r~ 404 (650)
+.++..+.
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 98766543
No 147
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=1.5e-16 Score=141.08 Aligned_cols=87 Identities=24% Similarity=0.390 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...++++|||+|||.++|+++|+++|+.||.|.+|++.++..++.++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
|+.....
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9875543
No 148
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=134.55 Aligned_cols=84 Identities=15% Similarity=0.320 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|++||.|.+|++..+ ++++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999654 5688999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
|+.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9876543
No 149
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=130.80 Aligned_cols=80 Identities=24% Similarity=0.459 Sum_probs=75.7
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||.++++++|+++|++||.|.++++..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456799999999999999999999999999999999886 5889999999999999999999999999999999999998
Q ss_pred c
Q 006316 398 Q 398 (650)
Q Consensus 398 ~ 398 (650)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 150
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=133.12 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCc--cCCCCccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLNGKPIR 112 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~--~i~g~~i~ 112 (650)
...++++|||+|||++++|++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|++. .|+|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456799999999999999999999999999999999864 579999999999999999988754 49999999
Q ss_pred ccccccCcc
Q 006316 113 IMYSYRDPT 121 (650)
Q Consensus 113 v~~s~~~~~ 121 (650)
|.|+.....
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999876543
No 151
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=2.4e-16 Score=137.30 Aligned_cols=83 Identities=34% Similarity=0.534 Sum_probs=78.6
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+||+.++++++|+++|++||.|++|+|+.+. +|+++|||||+|.+.++|.+|++.||+..++|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456799999999999999999999999999999999987 7899999999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+++.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8664
No 152
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=138.32 Aligned_cols=85 Identities=20% Similarity=0.414 Sum_probs=79.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.++|||+|||.++|+++|+++|+.||.|.+|++.+|+.+++++|||||+|.+.++|++|++. ++..|.|+.|+|.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3469999999999999999999999999999999999999999999999999999999999987 999999999999998
Q ss_pred ccCccc
Q 006316 117 YRDPTI 122 (650)
Q Consensus 117 ~~~~~~ 122 (650)
......
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 766543
No 153
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=3.1e-16 Score=136.62 Aligned_cols=84 Identities=29% Similarity=0.548 Sum_probs=79.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+||+..+|+++|+++|+.||.|++|+|+.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467799999999999999999999999999999999986 889999999999999999999999999999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
++.+.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98764
No 154
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=135.03 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=74.6
Q ss_pred CCCCCCCCCEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCc--cCCC
Q 006316 32 GDARQFVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLNG 108 (650)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~-~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~--~i~g 108 (650)
......++++|||+|||+ ++||++|+++|++||.|++|+|.+++ |||||+|.+.++|++|++.||+. .|.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 344456789999999999 99999999999999999999998763 69999999999999999999865 4999
Q ss_pred CcccccccccCccc
Q 006316 109 KPIRIMYSYRDPTI 122 (650)
Q Consensus 109 ~~i~v~~s~~~~~~ 122 (650)
++|+|.|+.....+
T Consensus 82 r~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 82 KPVRVHLSQKYKRI 95 (102)
T ss_dssp EECEEEEECCCTTS
T ss_pred cEEEEEECCCCCCC
Confidence 99999999865443
No 155
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=4.1e-16 Score=133.96 Aligned_cols=81 Identities=36% Similarity=0.519 Sum_probs=77.5
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
....++|||+||+..+|+++|+++|++||.|++++++.+.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 006316 398 Q 398 (650)
Q Consensus 398 ~ 398 (650)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 156
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.9e-16 Score=133.30 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~-i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
....++|||+|||+++||++|+++|+.||.|.+ |++++| .+++++|||||+|.+.++|++|++. |+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999998 999998 8899999999999999999999987 9999999999998
Q ss_pred ccccC
Q 006316 115 YSYRD 119 (650)
Q Consensus 115 ~s~~~ 119 (650)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87654
No 157
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=134.22 Aligned_cols=84 Identities=27% Similarity=0.442 Sum_probs=79.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+|||.++++++|+++|++||.|.+|+++.++ +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999999986 789999999999999999999999999999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
++++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98654
No 158
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=138.58 Aligned_cols=82 Identities=27% Similarity=0.402 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
...++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999 99999999999999987
Q ss_pred ccC
Q 006316 117 YRD 119 (650)
Q Consensus 117 ~~~ 119 (650)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 644
No 159
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=130.61 Aligned_cols=81 Identities=26% Similarity=0.352 Sum_probs=76.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||..+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 456789999999999999999999999999999999886 5889999999999999999999999999999999999998
Q ss_pred ch
Q 006316 398 QR 399 (650)
Q Consensus 398 ~~ 399 (650)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 160
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=2.3e-16 Score=136.26 Aligned_cols=84 Identities=25% Similarity=0.478 Sum_probs=78.6
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
...+++|||+|||..+|+++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999999999885 789999999999999999999999999999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98754
No 161
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=5.1e-17 Score=136.42 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
+.++|||+|||.++|+++|+++|++||.|.+++++++..+++++|||||+|.+.++|++|++.||+..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998865
No 162
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.3e-16 Score=130.97 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=74.9
Q ss_pred cCCceeEEecCCCCCCHHHHH----HHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEE
Q 006316 319 FEGLNLYVKNLDDSISDDKLK----ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V 394 (650)
..+++|||+|||+++++++|+ ++|++||.|++|+++.+..+ +|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 356789999999999999999 99999999999999998766 899999999999999999999999999999999
Q ss_pred Eecchh
Q 006316 395 ALAQRK 400 (650)
Q Consensus 395 ~~a~~~ 400 (650)
.+++++
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 998754
No 163
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=132.60 Aligned_cols=82 Identities=33% Similarity=0.637 Sum_probs=77.6
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEE-EEeeC-CCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~-~i~~~-~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
.+++|||+|||.++|+++|+++|++||.|.++ +++.+ .+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56799999999999999999999999999999 99988 48899999999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
.++.
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8664
No 164
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=135.32 Aligned_cols=86 Identities=16% Similarity=0.280 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEE-eeCCCCccccEEEEEecchhHHHHHccccc--CccCCCCcc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRALDELN--FTPLNGKPI 111 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~-V~~i~v~-~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln--~~~i~g~~i 111 (650)
+.+.++|||+|||.++|+++|+++|+.||. |.+|++. ++..+++++|||||+|.+.++|++|++.|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346799999999999999999999999998 9999999 888889999999999999999999999996 589999999
Q ss_pred cccccccCcc
Q 006316 112 RIMYSYRDPT 121 (650)
Q Consensus 112 ~v~~s~~~~~ 121 (650)
+|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999876544
No 165
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.5e-16 Score=131.74 Aligned_cols=83 Identities=28% Similarity=0.490 Sum_probs=77.3
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
....++|||+|||.++|+++|+++|++||.|++|+|+.+..+ ++|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 346689999999999999999999999999999999998755 8999999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2cq3_A 91 TARV 94 (103)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 7654
No 166
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=5e-16 Score=137.28 Aligned_cols=81 Identities=20% Similarity=0.424 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
+.++|||+|||.++|+++|+++|++||.|.+|++++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999 899999999999999987
Q ss_pred cC
Q 006316 118 RD 119 (650)
Q Consensus 118 ~~ 119 (650)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 167
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=131.69 Aligned_cols=82 Identities=22% Similarity=0.452 Sum_probs=77.1
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+||+.++++++|+++|++||.|++|+++.+. +|.++|||||+|.+.++|.+|++ ||+..++|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999886 68899999999999999999998 9999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
.++.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8764
No 168
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=133.70 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~----~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
....++|||+|||.++++++|+ ++|++||.|.+|++.+|..+ +|||||+|.+.++|++|++.||+..|.|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999998765 7899999999999999999999999999999
Q ss_pred cccccccC
Q 006316 112 RIMYSYRD 119 (650)
Q Consensus 112 ~v~~s~~~ 119 (650)
+|.|+...
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99998654
No 169
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=4.3e-16 Score=136.23 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=80.1
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCC---eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT---ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..++|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45678999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred ecchhHHHHH
Q 006316 396 LAQRKEERRA 405 (650)
Q Consensus 396 ~a~~~~~r~~ 405 (650)
++..++....
T Consensus 94 ~a~~~~~~~~ 103 (118)
T 2db1_A 94 KSHRTEMDWV 103 (118)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9988775543
No 170
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=130.85 Aligned_cols=83 Identities=17% Similarity=0.385 Sum_probs=77.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
.....++|||+|||.++|+++|+++|+.| .|.+|+++++ .+++++|||||+|.+.++|++|++ ||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567999999999999999999999999 9999999999 889999999999999999999998 99999999999999
Q ss_pred ccccCc
Q 006316 115 YSYRDP 120 (650)
Q Consensus 115 ~s~~~~ 120 (650)
++...+
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 987653
No 171
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=2.7e-16 Score=138.95 Aligned_cols=85 Identities=27% Similarity=0.450 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...++++|||+|||.++++++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44667999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ccccCc
Q 006316 115 YSYRDP 120 (650)
Q Consensus 115 ~s~~~~ 120 (650)
|+....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 987653
No 172
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=131.95 Aligned_cols=80 Identities=21% Similarity=0.449 Sum_probs=75.7
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEE--------EEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecC
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITS--------CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g 389 (650)
...++|||+||+.++|+++|+++|++||.|.+ ++++.++ +|+++|||||+|.+.++|.+|++.|||..++|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45679999999999999999999999999999 9999885 78999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 006316 390 KPLYVALAQ 398 (650)
Q Consensus 390 ~~l~V~~a~ 398 (650)
+.|+|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 173
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=133.51 Aligned_cols=83 Identities=24% Similarity=0.499 Sum_probs=77.9
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
...+++|||+||+.++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456789999999999999999999999999999999886 589999999999999999999999999999999999999
Q ss_pred cchh
Q 006316 397 AQRK 400 (650)
Q Consensus 397 a~~~ 400 (650)
+..+
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9765
No 174
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=133.64 Aligned_cols=84 Identities=30% Similarity=0.476 Sum_probs=79.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+|||.++|+++|+++|++||.|++|+++.+. ++.++|||||+|.+.++|.+|++.||+..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456799999999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
+..+.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 98764
No 175
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=1.4e-16 Score=142.85 Aligned_cols=87 Identities=25% Similarity=0.392 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
|+.....
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 176
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=136.23 Aligned_cols=83 Identities=34% Similarity=0.537 Sum_probs=78.9
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhh-cCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCce-ecCeeEEEEe
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSE-FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM-VVSKPLYVAL 396 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~-~~g~~l~V~~ 396 (650)
...++|||+||+.++|+++|+++|++ ||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.||+.. ++|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45689999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
+.++.
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97664
No 177
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=131.45 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=73.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHccccc--CccCCCCc
Q 006316 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN--FTPLNGKP 110 (650)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln--~~~i~g~~ 110 (650)
.....++++|||+|||+++||++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|+ +..|.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 444567899999999999999999999999999999999875 5899999999999999999775 56799999
Q ss_pred ccccccccCcc
Q 006316 111 IRIMYSYRDPT 121 (650)
Q Consensus 111 i~v~~s~~~~~ 121 (650)
|+|.|+.....
T Consensus 83 l~V~~a~~~~~ 93 (101)
T 2cq1_A 83 IYIQYSNHKEL 93 (101)
T ss_dssp CEEEECSCSSC
T ss_pred EEEEEcCcccC
Confidence 99999876543
No 178
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=6.5e-17 Score=134.29 Aligned_cols=80 Identities=29% Similarity=0.556 Sum_probs=74.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccccC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~ 119 (650)
++|||+|||.++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.+ |++|++.||+..|+|++|+|.|+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999998755
Q ss_pred c
Q 006316 120 P 120 (650)
Q Consensus 120 ~ 120 (650)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 179
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=133.36 Aligned_cols=83 Identities=31% Similarity=0.446 Sum_probs=78.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||.++|+++|+++|++||.|++|+++.+. ++.++|||||+|.+.++|.+|++.||+..++|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456799999999999999999999999999999999885 7899999999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+++.
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 180
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.2e-16 Score=134.93 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=81.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCe-EEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTI-TSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i-~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456789999999999999999999999999 899999999999999999999999999999987 999999999999999
Q ss_pred chhHHHHHh
Q 006316 398 QRKEERRAR 406 (650)
Q Consensus 398 ~~~~~r~~~ 406 (650)
.+++.+...
T Consensus 92 ~~~~~~~~~ 100 (114)
T 2cpy_A 92 TLEDMREIE 100 (114)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988876654
No 181
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.5e-16 Score=130.99 Aligned_cols=83 Identities=29% Similarity=0.470 Sum_probs=77.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
....++|||+|||..+++++|+++|++||.|++|+++.+..+ ++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345689999999999999999999999999999999998644 7999999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+.+.
T Consensus 91 ~~~~ 94 (103)
T 2cqi_A 91 TTPS 94 (103)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 8754
No 182
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=133.65 Aligned_cols=86 Identities=26% Similarity=0.487 Sum_probs=80.1
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
.++|||+||+..+++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4689999999999999999999999999999999885 789999999999999999999999999999999999999998
Q ss_pred hHHHHHh
Q 006316 400 KEERRAR 406 (650)
Q Consensus 400 ~~~r~~~ 406 (650)
+..+...
T Consensus 88 ~~~~~~~ 94 (104)
T 1p1t_A 88 EKNKEEL 94 (104)
T ss_dssp TTHHHHH
T ss_pred ccchhhh
Confidence 7766543
No 183
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.2e-16 Score=133.30 Aligned_cols=84 Identities=26% Similarity=0.475 Sum_probs=78.7
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC--CCCCcceEEEEcCCHHHHHHHHHHh-CCceecCeeEEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEM-NGKMVVSKPLYV 394 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~s~g~~fV~f~~~~~A~~A~~~l-~~~~~~g~~l~V 394 (650)
....++|||+|||..+|+++|+++|+.||.|++|+++.+. +|.++|||||+|.+.++|.+|++.| |+..++|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4567899999999999999999999999999999999884 8899999999999999999999999 999999999999
Q ss_pred EecchhH
Q 006316 395 ALAQRKE 401 (650)
Q Consensus 395 ~~a~~~~ 401 (650)
.++..+.
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998754
No 184
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2e-16 Score=137.54 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=76.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCE-EEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV-VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V-~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
...+.++|||+|||.++|+++|+++|+.||.| .+|++++|. +++++|||||+|.+.++|++|++. |+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567999999999999999999999999999 899999997 999999999999999999999977 999999999999
Q ss_pred cccccC
Q 006316 114 MYSYRD 119 (650)
Q Consensus 114 ~~s~~~ 119 (650)
.|+...
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 987644
No 185
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=131.49 Aligned_cols=82 Identities=37% Similarity=0.650 Sum_probs=76.2
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC--C--CCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--G--ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~--g--~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
..++|||+|||.++|+++|+++|++||.|++|++..+.. | .++|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567899999999999999999999999999999998763 4 889999999999999999999999999999999999
Q ss_pred ecchhH
Q 006316 396 LAQRKE 401 (650)
Q Consensus 396 ~a~~~~ 401 (650)
+++++.
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 997654
No 186
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=132.90 Aligned_cols=83 Identities=31% Similarity=0.524 Sum_probs=78.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||.++++++|+++|++||.|++++++.+. ++.++|||||+|.+.++|.+|++.||+..++|+.|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999886 6889999999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+++.
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8664
No 187
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-16 Score=134.59 Aligned_cols=84 Identities=17% Similarity=0.276 Sum_probs=74.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccC--ccCCCCc
Q 006316 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF--TPLNGKP 110 (650)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~--~~i~g~~ 110 (650)
.....++++|||+|||+++||++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.|++ ..|.|++
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 334457899999999999999999999999999999999976 48999999999999999998874 5799999
Q ss_pred ccccccccCccc
Q 006316 111 IRIMYSYRDPTI 122 (650)
Q Consensus 111 i~v~~s~~~~~~ 122 (650)
|+|.|+......
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999998765443
No 188
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=3.8e-16 Score=126.83 Aligned_cols=74 Identities=14% Similarity=0.269 Sum_probs=69.1
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCC-cc
Q 006316 39 STSLYVGDLDLSV------NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK-PI 111 (650)
Q Consensus 39 ~~~L~V~nLp~~v------te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~-~i 111 (650)
+++|||+|||.++ |+++|+++|++||.|.+|++.+ .+++++|||||+|.+.++|++|++.||+..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7899999999999999999884 5889999999999999999999999999999999 89
Q ss_pred ccc
Q 006316 112 RIM 114 (650)
Q Consensus 112 ~v~ 114 (650)
+|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 873
No 189
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=3.3e-16 Score=139.75 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=80.2
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCC---eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT---ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
...++|||+|||+++|+++|+++|+.||. |++|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..++|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45678999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred ecchhHHHHH
Q 006316 396 LAQRKEERRA 405 (650)
Q Consensus 396 ~a~~~~~r~~ 405 (650)
++.+++....
T Consensus 121 ~a~~~e~~~~ 130 (136)
T 2hgl_A 121 KSHRTEMDWV 130 (136)
T ss_dssp ECCHHHHHHH
T ss_pred ECChHHHHHH
Confidence 9988776543
No 190
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=138.00 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~----~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
.++++|||+|||+++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.||+..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999865 7999999999988753 678999999999999999999999999999999999
Q ss_pred ccccccCcc
Q 006316 113 IMYSYRDPT 121 (650)
Q Consensus 113 v~~s~~~~~ 121 (650)
|.|+.....
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999876543
No 191
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=133.65 Aligned_cols=83 Identities=36% Similarity=0.616 Sum_probs=77.8
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+||+..+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999885 688999999999999999999999999999999999999
Q ss_pred cchh
Q 006316 397 AQRK 400 (650)
Q Consensus 397 a~~~ 400 (650)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9865
No 192
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.2e-16 Score=134.48 Aligned_cols=83 Identities=20% Similarity=0.453 Sum_probs=78.1
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
.++|||+||+.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4689999999999999999999999999999999887 4899999999999999999999 9999999999999999988
Q ss_pred hHHHH
Q 006316 400 KEERR 404 (650)
Q Consensus 400 ~~~r~ 404 (650)
+..+.
T Consensus 104 ~~~~~ 108 (114)
T 2cq4_A 104 EKNRL 108 (114)
T ss_dssp HHHHH
T ss_pred CccCC
Confidence 77654
No 193
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=4.2e-16 Score=136.45 Aligned_cols=81 Identities=36% Similarity=0.539 Sum_probs=75.8
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+||+.++++++|+++|++||.|++++++.++ +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4467899999999999999999999999999999999885 689999999999999999999999999999999999998
Q ss_pred cc
Q 006316 397 AQ 398 (650)
Q Consensus 397 a~ 398 (650)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 194
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4e-16 Score=133.07 Aligned_cols=83 Identities=28% Similarity=0.430 Sum_probs=77.7
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||.++++++|+++|++||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 456799999999999999999999999999999999886 5899999999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+.+.
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7643
No 195
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.9e-16 Score=133.85 Aligned_cols=82 Identities=27% Similarity=0.466 Sum_probs=76.5
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
....++|||+||+.++|+++|+++|++||.|+++++..+.. .++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 44678999999999999999999999999999999998864 48999999999999999999999999999999999999
Q ss_pred chh
Q 006316 398 QRK 400 (650)
Q Consensus 398 ~~~ 400 (650)
+.+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 196
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=130.96 Aligned_cols=83 Identities=19% Similarity=0.378 Sum_probs=77.2
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchh
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
.++|||+|||+++|+++|+++|+.| .|++|+|+.+++|+++|||||+|.+.++|.+|+ .+|+..++|+.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 3589999999999999999999999 899999999999999999999999999999999 79999999999999999877
Q ss_pred HHHHH
Q 006316 401 EERRA 405 (650)
Q Consensus 401 ~~r~~ 405 (650)
+-...
T Consensus 94 ~~~~~ 98 (109)
T 2dnn_A 94 QWVAA 98 (109)
T ss_dssp HHHHH
T ss_pred chhhc
Confidence 65443
No 197
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=5.8e-16 Score=142.73 Aligned_cols=86 Identities=26% Similarity=0.429 Sum_probs=80.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..++++|||+|||.++||++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcc
Q 006316 116 SYRDPT 121 (650)
Q Consensus 116 s~~~~~ 121 (650)
+.....
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 875433
No 198
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=1e-15 Score=126.65 Aligned_cols=79 Identities=19% Similarity=0.430 Sum_probs=74.8
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
.++|||+|||.++|+++|+++|+.||.|.++++..+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|.|.+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4689999999999999999999999999999999986 8899999999999999999999 9999999999999999865
Q ss_pred h
Q 006316 400 K 400 (650)
Q Consensus 400 ~ 400 (650)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 199
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.4e-16 Score=135.38 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=79.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHH---HHHhcCCCEEEEEEEeeCCCC---ccccEEEEEecchhHHHHHcccccCccC
Q 006316 33 DARQFVSTSLYVGDLDLSVNDSQLY---DLFNQMGQVVSVRVCRDLSTR---RSLGYGYVNYNAAHEATRALDELNFTPL 106 (650)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~---~~Fs~~G~V~~i~v~~d~~t~---~s~G~a~V~F~~~~~A~~Al~~ln~~~i 106 (650)
..+..+.++|||+|||+++++++|+ ++|++||+|.+|++.++..++ +++|||||+|.+.++|++|++.||+..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3445668999999999999999999 999999999999999997654 5669999999999999999999999999
Q ss_pred CCCcccccccccCc
Q 006316 107 NGKPIRIMYSYRDP 120 (650)
Q Consensus 107 ~g~~i~v~~s~~~~ 120 (650)
.|++|+|.|+...+
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999987664
No 200
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.1e-16 Score=132.72 Aligned_cols=83 Identities=29% Similarity=0.508 Sum_probs=78.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhC------CceecCee
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMN------GKMVVSKP 391 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~------~~~~~g~~ 391 (650)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|| +..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456799999999999999999999999999999999886 68899999999999999999999999 99999999
Q ss_pred EEEEecchhH
Q 006316 392 LYVALAQRKE 401 (650)
Q Consensus 392 l~V~~a~~~~ 401 (650)
|.|.++.++.
T Consensus 93 l~v~~a~~~~ 102 (111)
T 1x4h_A 93 LKVDLAVTRD 102 (111)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCc
Confidence 9999998764
No 201
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=6.7e-16 Score=128.67 Aligned_cols=82 Identities=27% Similarity=0.426 Sum_probs=76.8
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+|||.++++++|+++|++||.|.++++..+ +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45689999999999999999999999999999999985 78899999999999999999999999999999999999987
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
...
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 202
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=129.36 Aligned_cols=81 Identities=22% Similarity=0.416 Sum_probs=74.7
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC--CCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~--g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
..++|||+|||.++|+++|+++|++||.|.++++..+.. ++++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999988763 338999999999999999999999999999999999998
Q ss_pred chh
Q 006316 398 QRK 400 (650)
Q Consensus 398 ~~~ 400 (650)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 203
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=126.60 Aligned_cols=78 Identities=23% Similarity=0.417 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..+.++|||+|||.++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.||+..|+|++|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467999999999999999999999999999999998 36999999999999999999999999999999999
Q ss_pred cccCcc
Q 006316 116 SYRDPT 121 (650)
Q Consensus 116 s~~~~~ 121 (650)
+.....
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876544
No 204
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=3.2e-16 Score=139.21 Aligned_cols=84 Identities=26% Similarity=0.366 Sum_probs=78.4
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+|||.++|+++|+++|++||.|++|+++.+. +|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999886 689999999999999999999999999999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
+..+.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 97653
No 205
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.7e-16 Score=130.39 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=72.1
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh--CCceecCeeEEEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM--NGKMVVSKPLYVA 395 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l--~~~~~~g~~l~V~ 395 (650)
..++++|||+|||+.+|+++|+++|++||.|++|+++++ ||||||+|.+.++|.+|++.| ++..+.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 456789999999999999999999999999999998865 789999999999999999987 5678999999999
Q ss_pred ecchhH
Q 006316 396 LAQRKE 401 (650)
Q Consensus 396 ~a~~~~ 401 (650)
+++.+.
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 998665
No 206
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=3.4e-16 Score=136.85 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~---V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
....++|||+|||+++||++|+++|+.||. |.+|++++|.. ++++|||||+|.+.++|++|++ +|+..|.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999998 89999999976 9999999999999999999998 899999999999
Q ss_pred ccccccC
Q 006316 113 IMYSYRD 119 (650)
Q Consensus 113 v~~s~~~ 119 (650)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9887543
No 207
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=7.6e-16 Score=135.78 Aligned_cols=86 Identities=20% Similarity=0.324 Sum_probs=77.0
Q ss_pred ccCCceeEEecCCCCCCHHHHH----HHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLK----ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 393 (650)
..++++|||+||++.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|+..|||..+.|++|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3457799999999999999876 6999999999988764 578999999999999999999999999999999999
Q ss_pred EEecchhHHHHH
Q 006316 394 VALAQRKEERRA 405 (650)
Q Consensus 394 V~~a~~~~~r~~ 405 (650)
|.|++.+..+..
T Consensus 104 V~~a~~~~~~~~ 115 (127)
T 2a3j_A 104 ITFSETPQSQVA 115 (127)
T ss_dssp EEECCCCCHHHH
T ss_pred EEEccCcchhcc
Confidence 999988766544
No 208
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=9.1e-16 Score=135.56 Aligned_cols=82 Identities=34% Similarity=0.512 Sum_probs=78.1
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..+++|||+||+..+++++|+++|++||.|++|++..+.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 45679999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 209
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=134.51 Aligned_cols=86 Identities=13% Similarity=0.172 Sum_probs=80.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCC---eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT---ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|+. +|+..++|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45678999999999999999999999998 999999999889999999999999999999999 99999999999999
Q ss_pred ecchhHHHHH
Q 006316 396 LAQRKEERRA 405 (650)
Q Consensus 396 ~a~~~~~r~~ 405 (650)
++.+++....
T Consensus 88 ~a~~~~~~~~ 97 (107)
T 2lmi_A 88 EINNEDVDAL 97 (107)
T ss_dssp ECCHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9998776544
No 210
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.1e-16 Score=132.27 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=70.7
Q ss_pred cCCceeEEecCCC-CCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCc--eecCeeEEEE
Q 006316 319 FEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395 (650)
Q Consensus 319 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~--~~~g~~l~V~ 395 (650)
.++++|||+|||+ ++|+++|+++|++||.|++|+|+++ +|||||+|.+.++|.+|++.||+. .+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3678999999999 9999999999999999999999875 579999999999999999999864 5999999999
Q ss_pred ecchh
Q 006316 396 LAQRK 400 (650)
Q Consensus 396 ~a~~~ 400 (650)
+++.+
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99854
No 211
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.5e-15 Score=125.06 Aligned_cols=79 Identities=28% Similarity=0.488 Sum_probs=73.1
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+|||.++++++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++ +++..++|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3466799999999999999999999999999999999886 68999999999999999999995 588899999999987
Q ss_pred c
Q 006316 397 A 397 (650)
Q Consensus 397 a 397 (650)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 212
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.1e-16 Score=133.93 Aligned_cols=80 Identities=16% Similarity=0.368 Sum_probs=73.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCC--ceecCeeEEEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG--KMVVSKPLYVA 395 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~--~~~~g~~l~V~ 395 (650)
..++++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.+++ ..+.|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 446789999999999999999999999999999999875 78999999999999999999974 68999999999
Q ss_pred ecchhHH
Q 006316 396 LAQRKEE 402 (650)
Q Consensus 396 ~a~~~~~ 402 (650)
+++.++.
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9987653
No 213
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7.8e-16 Score=130.20 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=76.9
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeE-EEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCee----E
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTIT-SCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP----L 392 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~----l 392 (650)
...++|||+|||.++++++|+++|++||.|. +++++.++ +|.++|||||+|.+.++|.+|++.|||..++|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 99999986 7899999999999999999999999999999999 9
Q ss_pred EEEecchh
Q 006316 393 YVALAQRK 400 (650)
Q Consensus 393 ~V~~a~~~ 400 (650)
+|.+++..
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998653
No 214
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=6.6e-16 Score=132.43 Aligned_cols=84 Identities=25% Similarity=0.567 Sum_probs=78.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCcee---cCeeEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV---VSKPLY 393 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~---~g~~l~ 393 (650)
....++|||+||+.++|+++|+++|++||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3456799999999999999999999999999999999886 589999999999999999999999999988 899999
Q ss_pred EEecchhH
Q 006316 394 VALAQRKE 401 (650)
Q Consensus 394 V~~a~~~~ 401 (650)
|.++..+.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998654
No 215
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.4e-16 Score=131.24 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|++||.| +++++ .+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44568999999999999999999999999977 67777 788999999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
|+.....
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9876543
No 216
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.3e-16 Score=133.46 Aligned_cols=84 Identities=26% Similarity=0.461 Sum_probs=78.2
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeE--------EEEEeeC-CCCCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTIT--------SCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~~~i~~~-~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~ 388 (650)
....++|||+||+.++|+++|+++|++||.|. .|+|+.+ .+|+++|||||+|.+.++|.+|++.|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678999999999999999999999999999 6999988 47999999999999999999999999999999
Q ss_pred CeeEEEEecchhH
Q 006316 389 SKPLYVALAQRKE 401 (650)
Q Consensus 389 g~~l~V~~a~~~~ 401 (650)
|+.|.|.+++.+.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999998654
No 217
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=126.86 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=76.1
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+|||.++|+++|+++|+.| .|.+++++.+.+|+++|||||+|.+.++|.+|+. |||..++|+.|.|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456789999999999999999999999 9999999999899999999999999999999999 99999999999999987
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
.+
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 218
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7.2e-16 Score=131.17 Aligned_cols=85 Identities=24% Similarity=0.425 Sum_probs=77.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....+.++|||+|||.++|+++|+++|+.| .+|+++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 445578999999999999999999999987 37889999889999999999999999999999999999999999999
Q ss_pred cccccCcc
Q 006316 114 MYSYRDPT 121 (650)
Q Consensus 114 ~~s~~~~~ 121 (650)
.|+.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99876544
No 219
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=6.2e-16 Score=151.47 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G--~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..++|||+||++++||++|+++|+.|| .|++|+|++|+.|++++|||||+|.+.++|++||+.||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 006316 116 SYR 118 (650)
Q Consensus 116 s~~ 118 (650)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 220
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6e-16 Score=135.52 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=80.1
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCe----EEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTI----TSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i----~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 393 (650)
....++|||+|||+++|+++|+++|++||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..++|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3456799999999999999999999999975 689999988999999999999999999999986 99999999999
Q ss_pred EEecchhHHHHHh
Q 006316 394 VALAQRKEERRAR 406 (650)
Q Consensus 394 V~~a~~~~~r~~~ 406 (650)
|..+..++.++..
T Consensus 99 V~~a~~~e~~~~~ 111 (123)
T 2dha_A 99 LFRSTAAEVQQVL 111 (123)
T ss_dssp CEEECHHHHHHHH
T ss_pred EEECCHHHHHHHH
Confidence 9999888766654
No 221
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=131.36 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCC------CHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCC-
Q 006316 37 FVSTSLYVGDLDLSV------NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK- 109 (650)
Q Consensus 37 ~~~~~L~V~nLp~~v------te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~- 109 (650)
..+++|||+|||.++ |+++|+++|++||.|.+|++.+ .+++++|||||+|.+.++|++|++.||+..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 8899999999999999999983 6789999999999999999999999999999998
Q ss_pred cccccccccC
Q 006316 110 PIRIMYSYRD 119 (650)
Q Consensus 110 ~i~v~~s~~~ 119 (650)
+|+|.|+...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999988643
No 222
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=130.92 Aligned_cols=81 Identities=25% Similarity=0.463 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCC--------
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN-------- 107 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~-------- 107 (650)
..+.++|||+|||.++|+++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.||+..|.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457999999999999999999999999999999999997 8999999999999999999999999999994
Q ss_pred CCcccccccc
Q 006316 108 GKPIRIMYSY 117 (650)
Q Consensus 108 g~~i~v~~s~ 117 (650)
+++|+|.|+.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 5667776665
No 223
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.5e-16 Score=130.93 Aligned_cols=82 Identities=22% Similarity=0.438 Sum_probs=76.5
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC--CCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~--g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
....++|||+|||.++|+++|+++|+.|| |.+|+|+.+.. |+++|||||+|.+.++|.+|+ .||+..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 99999998874 899999999999999999999 999999999999999
Q ss_pred ecchhH
Q 006316 396 LAQRKE 401 (650)
Q Consensus 396 ~a~~~~ 401 (650)
++..+.
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998764
No 224
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=129.12 Aligned_cols=81 Identities=25% Similarity=0.493 Sum_probs=74.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456799999999999999999999999999999999864 5799999999999999999999999999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
|+.....
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9876544
No 225
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=8.7e-16 Score=132.81 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=76.5
Q ss_pred ccCCceeEEecCCCCCCHHHHH---HHHhhcCCeEEEEEeeCCC----CCCcceEEEEcCCHHHHHHHHHHhCCceecCe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLK---ELFSEFGTITSCKVMRDPN----GISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~~~i~~~~~----g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~ 390 (650)
....++|||+|||+++++++|+ ++|++||.|.++++..+.. ++++|||||+|.+.++|.+|++.|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999 9999999999999988762 35779999999999999999999999999999
Q ss_pred eEEEEecchhH
Q 006316 391 PLYVALAQRKE 401 (650)
Q Consensus 391 ~l~V~~a~~~~ 401 (650)
.|.|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998664
No 226
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.5e-16 Score=136.49 Aligned_cols=84 Identities=13% Similarity=0.202 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
.....++|||+|||+++||++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|++|++ ||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34456899999999999999999999999999997777777899999999999999999999998 99999999999999
Q ss_pred ccccC
Q 006316 115 YSYRD 119 (650)
Q Consensus 115 ~s~~~ 119 (650)
++...
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87643
No 227
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.62 E-value=7e-16 Score=143.51 Aligned_cols=87 Identities=21% Similarity=0.360 Sum_probs=80.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...++++|||+|||+++|+++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
|+.....
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9876544
No 228
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=2.8e-16 Score=125.52 Aligned_cols=75 Identities=15% Similarity=0.402 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
+|||+|||.++|+++|+++|++||+|.+|++.+++.+++++|||||+|.+.++|++|++. ++..|.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999975 888999999999764
No 229
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.61 E-value=4e-16 Score=139.78 Aligned_cols=122 Identities=18% Similarity=0.306 Sum_probs=80.3
Q ss_pred EEEEEecchhHHHHHcccccCccCCCCcccccccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC
Q 006316 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD 162 (650)
Q Consensus 83 ~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d 162 (650)
|+|.+|.+...+..|++.+++....|+.- +.+ ..+.......++|||+|||.++++++|+++|+.||.|.+|++..+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~--~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 82 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY--GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 82 (135)
T ss_dssp ------------------------------CCS--CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCc--CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 67888888888999999888766555432 222 233334445688999999999999999999999999999999988
Q ss_pred -CCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEEccccccc
Q 006316 163 -SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207 (650)
Q Consensus 163 -~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 207 (650)
.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++....
T Consensus 83 ~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 83 RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp SSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 578899999999999999999999999999999999998876543
No 230
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.6e-15 Score=129.29 Aligned_cols=82 Identities=22% Similarity=0.407 Sum_probs=76.1
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+|||.++++++|+++|++|| |.+|+++.+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 9999999987 6899999999999999999999 9999999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 97654
No 231
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=6.1e-16 Score=123.60 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=70.5
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
+|||+|||.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|.+|++ +|+..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999887 78999999999999999999997 9999999999999875
No 232
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=131.99 Aligned_cols=80 Identities=20% Similarity=0.419 Sum_probs=73.8
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC--CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
...++|||+||+.++++++|+++|+.|| |.+++++.+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4567999999999999999999999999 9999999886 7999999999999999999999 9999999999999999
Q ss_pred cchh
Q 006316 397 AQRK 400 (650)
Q Consensus 397 a~~~ 400 (650)
++.+
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8764
No 233
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=129.92 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=74.8
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
....++|||+||+.++|+++|+++|++||.|++|++..+ +.++|||||+|.+.++|.+|++.||+..++|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345679999999999999999999999999999999665 568999999999999999999999999999999999998
Q ss_pred chh
Q 006316 398 QRK 400 (650)
Q Consensus 398 ~~~ 400 (650)
+.+
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
No 234
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=130.74 Aligned_cols=79 Identities=24% Similarity=0.262 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCC-----Cc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG-----KP 110 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g-----~~ 110 (650)
....++|||+|||.++|+++|+++|+.||.|.+|+|.+| |||||+|.+.++|++|++.||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356799999999999999999999999999999999886 799999999999999999999999999 99
Q ss_pred ccccccccCcc
Q 006316 111 IRIMYSYRDPT 121 (650)
Q Consensus 111 i~v~~s~~~~~ 121 (650)
|+|.++.....
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999876543
No 235
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=127.62 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCC--CCccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN--GKPIR 112 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~--g~~i~ 112 (650)
...++++|||+|||.++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.||+..|. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456799999999999999999999999999999999764 579999999999999999999999999 99999
Q ss_pred ccccccCc
Q 006316 113 IMYSYRDP 120 (650)
Q Consensus 113 v~~s~~~~ 120 (650)
|.|+...+
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987653
No 236
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=137.56 Aligned_cols=83 Identities=34% Similarity=0.509 Sum_probs=78.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+||+.++|+++|+++|+.||.|++|+++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999886 6889999999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+.+.
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 237
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=132.00 Aligned_cols=82 Identities=28% Similarity=0.413 Sum_probs=76.6
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+||+.++|+++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|.+|++.+++ .++|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3467899999999999999999999999999999999886 689999999999999999999999998 89999999999
Q ss_pred cchh
Q 006316 397 AQRK 400 (650)
Q Consensus 397 a~~~ 400 (650)
+..+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9754
No 238
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=133.46 Aligned_cols=81 Identities=7% Similarity=0.073 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~---V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
....++|||+|||+++|+++|+++|+.||. |.+|++++|.. ++++|||||+|.+.++|++|++ +|+..|.|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999988 99999999976 9999999999999999999998 899999999999
Q ss_pred cccccc
Q 006316 113 IMYSYR 118 (650)
Q Consensus 113 v~~s~~ 118 (650)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 988754
No 239
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=130.68 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=76.4
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEE-EEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITS-CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~-~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||+++|+++|+++|+.||.|.+ |+|..+.+|+++|||||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45679999999999999999999999999998 8888888999999999999999999999998 999999999999998
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 240
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=131.93 Aligned_cols=82 Identities=29% Similarity=0.622 Sum_probs=76.8
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee--------cCe
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--------VSK 390 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~--------~g~ 390 (650)
...++|||+|||.++|+++|+++|+.||.|.+++++.+.+|.++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 456799999999999999999999999999999999998999999999999999999999999999999 578
Q ss_pred eEEEEecchh
Q 006316 391 PLYVALAQRK 400 (650)
Q Consensus 391 ~l~V~~a~~~ 400 (650)
+|.|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998753
No 241
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=124.26 Aligned_cols=76 Identities=21% Similarity=0.424 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccc-cCccCCCCccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL-NFTPLNGKPIRIM 114 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~l-n~~~i~g~~i~v~ 114 (650)
..+.++|||+|||.++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.| ++..|.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345789999999999999999999999999999999874 579999999999999999988 9999999999999
Q ss_pred ccc
Q 006316 115 YSY 117 (650)
Q Consensus 115 ~s~ 117 (650)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 242
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=6.3e-16 Score=137.92 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~---V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
....++|||+|||+++||++|+++|+.||. |.+|++++|+. ++++|||||+|.+.++|++|++ +|+..|.|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456799999999999999999999999999 89999999976 9999999999999999999998 999999999999
Q ss_pred cccccc
Q 006316 113 IMYSYR 118 (650)
Q Consensus 113 v~~s~~ 118 (650)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 988753
No 243
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=1.5e-15 Score=134.51 Aligned_cols=84 Identities=24% Similarity=0.490 Sum_probs=78.6
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
...+++|||+||+..+|+++|+++|++||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3457799999999999999999999999999999999886 889999999999999999999999999999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
+..+.
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97654
No 244
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=3.5e-16 Score=167.64 Aligned_cols=156 Identities=15% Similarity=0.284 Sum_probs=115.2
Q ss_pred CCCCCCCHHHHHHHHhcCCCEEEEEEEee----C-CCCccccEE--EEEecchhHHHHHcccccCccCCCC---------
Q 006316 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRD----L-STRRSLGYG--YVNYNAAHEATRALDELNFTPLNGK--------- 109 (650)
Q Consensus 46 nLp~~vte~~L~~~Fs~~G~V~~i~v~~d----~-~t~~s~G~a--~V~F~~~~~A~~Al~~ln~~~i~g~--------- 109 (650)
.||++ |.++|..+++|..|..+.. . .+....|++ |+.|.+..++..++..++......+
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 45665 7899999999988854432 1 122223333 8888887776666544433222221
Q ss_pred ------cccccccccCcccccCCCceeEecCCCcccchHHHHhhhcccCceeEEEEeeC-CCCCcccEEEEEECCHHHHH
Q 006316 110 ------PIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182 (650)
Q Consensus 110 ------~i~v~~s~~~~~~~~~~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d-~~g~skg~afV~F~~~e~A~ 182 (650)
.+.+.....++.......++|||+||+.++++++|.++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.
T Consensus 79 ~~~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 79 QQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred HHHHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHH
Confidence 11121122223333445679999999999999999999999999999999998 68889999999999999999
Q ss_pred HHHHhhCCceecCeeeEEcccccc
Q 006316 183 SAIDKLNGMLLNDKQVFVGPFLRK 206 (650)
Q Consensus 183 ~Ai~~lng~~i~g~~l~v~~~~~~ 206 (650)
.||+.|||..|.|+.|.|.++..+
T Consensus 159 ~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 159 SAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred HHHHHcCCCEECCEEEEEEEeCCC
Confidence 999999999999999999887654
No 245
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=5e-16 Score=126.15 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=68.4
Q ss_pred CceeEEecCCCCC------CHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCe-eEE
Q 006316 321 GLNLYVKNLDDSI------SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PLY 393 (650)
Q Consensus 321 ~~~l~V~nl~~~~------t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l~ 393 (650)
+++|||+|||..+ |+++|+++|++||.|.++++. ..+|+++|||||+|.+.++|.+|++.|||..++|+ .|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 679999999999999999988 45789999999999999999999999999999999 887
Q ss_pred EE
Q 006316 394 VA 395 (650)
Q Consensus 394 V~ 395 (650)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 246
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=1.4e-15 Score=130.62 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=71.6
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..++|||+|||+++|+++|+++|++|| .|..+++..+ .++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 457899999999999999999999999 9999998643 479999999999999999999999999999999999987
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 247
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=7.4e-16 Score=129.23 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=73.3
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..++|||+|||.++|+++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++.||+..++|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45789999999999999999999999999988877654 78899999999999999999999999999999999999875
Q ss_pred h
Q 006316 399 R 399 (650)
Q Consensus 399 ~ 399 (650)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 248
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=7.4e-16 Score=130.05 Aligned_cols=82 Identities=21% Similarity=0.364 Sum_probs=74.9
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeC-CCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||.++++++|+++|++||.|.+++++.+ .+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999998877765 47899999999999999999999999999999999999998
Q ss_pred chh
Q 006316 398 QRK 400 (650)
Q Consensus 398 ~~~ 400 (650)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 643
No 249
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.60 E-value=2.2e-15 Score=129.68 Aligned_cols=82 Identities=30% Similarity=0.526 Sum_probs=74.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+||+.++|+++|+++|+.||.|++|+++.+. +|.++|||||+|.+.++|.+|+..+ +..++|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 456799999999999999999999999999999999986 5899999999999999999999986 59999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
..+.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 250
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=4.7e-16 Score=133.60 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
..++|||+|||+++|+++|+++|++|| .|..++|.. ++++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 899998853 357899999999999999999999999999999999998
Q ss_pred ccCccc
Q 006316 117 YRDPTI 122 (650)
Q Consensus 117 ~~~~~~ 122 (650)
...+..
T Consensus 103 ~~~p~~ 108 (111)
T 2jvr_A 103 DNPPPI 108 (111)
T ss_dssp CC----
T ss_pred CCCCCC
Confidence 765543
No 251
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-16 Score=134.05 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.++|||+|||.++|+++|+++|+.||.|.+ .++++..+++++|||||+|.+.++|++|++ ||+..|.|+.|+|.|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35689999999999999999999999999988 777887889999999999999999999998 9999999999999998
Q ss_pred ccCc
Q 006316 117 YRDP 120 (650)
Q Consensus 117 ~~~~ 120 (650)
....
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 252
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=3e-16 Score=168.25 Aligned_cols=83 Identities=18% Similarity=0.380 Sum_probs=77.7
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+||+..+|+++|+++|+.||.|+.|+|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999885 7899999999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
..+.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8543
No 253
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=1.5e-15 Score=140.02 Aligned_cols=83 Identities=23% Similarity=0.301 Sum_probs=77.9
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||.++|+++|+++|++||.|++|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999887 5889999999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
....
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 254
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=7.6e-16 Score=131.99 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
...++|||+|||+++||++|+++|+.| .|.+|+|++|.. ++++|||||+|.+.++|++|+ .+|+..|.|+.|+|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346899999999999999999999999 899999999965 999999999999999999999 68999999999999776
Q ss_pred cc
Q 006316 117 YR 118 (650)
Q Consensus 117 ~~ 118 (650)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 255
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=9.3e-16 Score=131.17 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=74.5
Q ss_pred CCceeEEecCCCCC------CHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCe-eE
Q 006316 320 EGLNLYVKNLDDSI------SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PL 392 (650)
Q Consensus 320 ~~~~l~V~nl~~~~------t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l 392 (650)
.+++|||+|||..+ |+++|+++|++||.|.+|++. ..+|+++|||||+|.+.++|.+|+..|||..++|+ .|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 46789999999999 789999999999999999988 46789999999999999999999999999999998 99
Q ss_pred EEEecchh
Q 006316 393 YVALAQRK 400 (650)
Q Consensus 393 ~V~~a~~~ 400 (650)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 256
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=129.28 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=71.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCc--eecCeeEEEEe
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVAL 396 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~--~~~g~~l~V~~ 396 (650)
.++++|||+||++.+++++|+++|++||.|++|+++++ ||||||+|.+.++|.+|++.|++. .+.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45679999999999999999999999999999998864 789999999999999999998764 58999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
++.+.
T Consensus 88 a~~~~ 92 (104)
T 1wex_A 88 STSKR 92 (104)
T ss_dssp CSSSS
T ss_pred ccCcc
Confidence 98654
No 257
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=4.4e-16 Score=138.99 Aligned_cols=82 Identities=21% Similarity=0.378 Sum_probs=76.9
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEE--EEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCc----eecCee
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITS--CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK----MVVSKP 391 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~----~~~g~~ 391 (650)
...++|||+||++++|+++|+++|++||.|.. |+|++++ +|+++|||||+|.+. +|.+|+..|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45678999999999999999999999999977 9999998 899999999999999 999999999999 999999
Q ss_pred EEEEecchhH
Q 006316 392 LYVALAQRKE 401 (650)
Q Consensus 392 l~V~~a~~~~ 401 (650)
|.|.+++.+.
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997653
No 258
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.8e-16 Score=127.48 Aligned_cols=79 Identities=27% Similarity=0.420 Sum_probs=74.0
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
.+++|||+|||.++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 56799999999999999999999999999999999885 78999999999999999999999999999999999887654
No 259
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=126.40 Aligned_cols=79 Identities=24% Similarity=0.450 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|||.++|+++|+++|++||.|.+|++.++ ||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4456799999999999999999999999999999999854 99999999999999999999999999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
|+.....
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9876544
No 260
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.4e-16 Score=130.52 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=74.1
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+|||+++|+++|+++|+.||. .+|+|+.+++|+++|||||+|.+.++|.+|+ ++|+..++++.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 45678999999999999999999999995 4999999999999999999999999999999 579999999999999876
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
..+
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 261
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=126.20 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
...+++|||+|||.++|+++|+++|+.||.|. ++++.+ +++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999996 666654 6789999999999999999999999999999999999
Q ss_pred cccC
Q 006316 116 SYRD 119 (650)
Q Consensus 116 s~~~ 119 (650)
+...
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 262
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8e-16 Score=133.99 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..++++|||+|||.++|+++|+++|+.||.|.++.+..+..+++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34679999999999999999999999999985443333334889999999999999999999999999999999999999
Q ss_pred cccCcc
Q 006316 116 SYRDPT 121 (650)
Q Consensus 116 s~~~~~ 121 (650)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 876543
No 263
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1e-15 Score=122.96 Aligned_cols=75 Identities=32% Similarity=0.565 Sum_probs=71.5
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
++|||+|||.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|.+|++.++ ..++|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999886 68999999999999999999999999 9999999999986
No 264
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=130.34 Aligned_cols=81 Identities=21% Similarity=0.491 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
...++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45789999999999999999999999999999999976 579999999999999999999999999999999999
Q ss_pred ccCcccc
Q 006316 117 YRDPTIR 123 (650)
Q Consensus 117 ~~~~~~~ 123 (650)
...+...
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4g_A 97 KESPDMT 103 (109)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 8776543
No 265
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=130.33 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=77.5
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+|||.++++++|+++|++||.|++|+++.++ +|.++|||||+|.+.++|.+|+.. ++..++|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3466899999999999999999999999999999999985 789999999999999999999999 99999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 88664
No 266
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=120.84 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=67.5
Q ss_pred CCCE-EEEcCCCCCCCHHH----HHHHHhcC-CCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 38 VSTS-LYVGDLDLSVNDSQ----LYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 38 ~~~~-L~V~nLp~~vte~~----L~~~Fs~~-G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
++.+ |||+|||.++++++ |+++|++| |+|++| |+ |+|||.|.+.++|.+|++.||+..|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4555 99999999999988 66999999 599998 33 899999999999999999999999999999
Q ss_pred cccccccCcccc
Q 006316 112 RIMYSYRDPTIR 123 (650)
Q Consensus 112 ~v~~s~~~~~~~ 123 (650)
+|.++..+.+..
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999998776543
No 267
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=1.6e-15 Score=130.35 Aligned_cols=77 Identities=25% Similarity=0.571 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..++++|||+|||.++|+++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.||+..|+|+.|+|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567999999999999999999999999999999998 47999999999999999999999999999999999
Q ss_pred cccCc
Q 006316 116 SYRDP 120 (650)
Q Consensus 116 s~~~~ 120 (650)
+...+
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 87654
No 268
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=127.18 Aligned_cols=79 Identities=29% Similarity=0.460 Sum_probs=73.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+|||.++|+++|+++|++||.| +++.+.+|+++|||||+|.+.++|.+|+..||+..++|+.|+|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 456899999999999999999999999977 56667789999999999999999999999999999999999999997
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
++
T Consensus 90 ~~ 91 (101)
T 2fc9_A 90 PR 91 (101)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 269
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.59 E-value=5.6e-16 Score=128.61 Aligned_cols=79 Identities=30% Similarity=0.518 Sum_probs=72.3
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchh
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
++|||+||+.++++++|+++|++||.|.++++..+. +|.++|||||+|.+.+ |.+|+..|||..++|+.|.|.++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999999886 5899999999999999 99999999999999999999999876
Q ss_pred H
Q 006316 401 E 401 (650)
Q Consensus 401 ~ 401 (650)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 270
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.9e-15 Score=128.38 Aligned_cols=75 Identities=19% Similarity=0.425 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
.+++|||+|||.++++++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.||+..|+|+.|+|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 456899999999999999999999999999999999976
Q ss_pred c
Q 006316 118 R 118 (650)
Q Consensus 118 ~ 118 (650)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 271
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=2.3e-15 Score=132.06 Aligned_cols=80 Identities=14% Similarity=0.261 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEE--EEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~--~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....++|||+|||+++||++|+++|+.| .|+ +|+|++|+. ++++|||||+|.+.++|++|++. ++..|.|+.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3467899999999999999999999999 677 999999976 99999999999999999999975 778999999999
Q ss_pred ccccc
Q 006316 114 MYSYR 118 (650)
Q Consensus 114 ~~s~~ 118 (650)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87654
No 272
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=130.04 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=75.6
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCC-eEEEEEe-eCC-CCCCcceEEEEcCCHHHHHHHHHHhC--CceecCeeEE
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT-ITSCKVM-RDP-NGISRGSGFVAFSTAEEASKALTEMN--GKMVVSKPLY 393 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~~~i~-~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~--~~~~~g~~l~ 393 (650)
...++|||+|||.++|+++|+++|++||. |.+++++ .+. +|.++|||||+|.+.++|.+|++.|+ +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35678999999999999999999999998 9999998 554 57899999999999999999999996 5899999999
Q ss_pred EEecchhH
Q 006316 394 VALAQRKE 401 (650)
Q Consensus 394 V~~a~~~~ 401 (650)
|.+++++.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99998664
No 273
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=4.4e-15 Score=129.30 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=75.2
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..+++|||+|||..+|+++|+++|+.||.|.+++++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 35679999999999999999999999999999999875 5679999999999999999999999999999999999998
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
.+.
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 654
No 274
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=1e-16 Score=139.96 Aligned_cols=87 Identities=21% Similarity=0.378 Sum_probs=81.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCC
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~--------i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g 108 (650)
.++++|||+|||.++++++|+++|++||.|.+ |++.+|+.+++++|||||+|.+.++|++|++.||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CcccccccccCcccc
Q 006316 109 KPIRIMYSYRDPTIR 123 (650)
Q Consensus 109 ~~i~v~~s~~~~~~~ 123 (650)
++|+|.|+...+...
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 85 NPIKVSFATRRADFN 99 (116)
Confidence 999999987765443
No 275
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=7.5e-16 Score=133.09 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
.+..++|||+|||.++|+++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999998864 557999999999999999999999999999999999
Q ss_pred cccC
Q 006316 116 SYRD 119 (650)
Q Consensus 116 s~~~ 119 (650)
+..+
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8754
No 276
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.5e-15 Score=128.55 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccC--ccCCCCccc
Q 006316 36 QFVSTSLYVGDLDLS-VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF--TPLNGKPIR 112 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~-vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~--~~i~g~~i~ 112 (650)
..++++|||+|||++ +||++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.||+ ..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456899999999998 99999999999999999999974 358999999999999999998864 459999999
Q ss_pred ccccccCcc
Q 006316 113 IMYSYRDPT 121 (650)
Q Consensus 113 v~~s~~~~~ 121 (650)
|.|+.....
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999876543
No 277
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=125.27 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=73.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
....+.++|||+|||.++|+++|+++|++||.|.+|++.++ ||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34556799999999999999999999999999999999854 9999999999999999999999999999999
Q ss_pred cccccCcc
Q 006316 114 MYSYRDPT 121 (650)
Q Consensus 114 ~~s~~~~~ 121 (650)
.|+.....
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99876543
No 278
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-15 Score=125.85 Aligned_cols=81 Identities=30% Similarity=0.422 Sum_probs=75.2
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+||+.++++++|+++|+.||.|++|+++.+. +|.++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 456789999999999999999999999999999999986 69999999999999999999998 478999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8764
No 279
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=1.5e-15 Score=127.85 Aligned_cols=84 Identities=32% Similarity=0.521 Sum_probs=76.4
Q ss_pred ccCCceeEEecCCCCCCHHHHH----HHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLK----ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 393 (650)
..++++|||+|||.++++++|+ ++|++||.|.++++.. +|.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3467899999999999999999 9999999999999874 477899999999999999999999999999999999
Q ss_pred EEecchhHHH
Q 006316 394 VALAQRKEER 403 (650)
Q Consensus 394 V~~a~~~~~r 403 (650)
|.+++++...
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9999876544
No 280
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.8e-15 Score=127.23 Aligned_cols=77 Identities=19% Similarity=0.322 Sum_probs=71.7
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+||+.++++++|+++|++||.|+++++. +++|||||+|.+.++|.+|+..|||..++|+.|+|.+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 346799999999999999999999999999999998 358899999999999999999999999999999999987
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 281
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.3e-15 Score=130.25 Aligned_cols=81 Identities=28% Similarity=0.513 Sum_probs=76.0
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..++|||+||+.++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 34689999999999999999999999999999999986 689999999999999999999998 9999999999999998
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 764
No 282
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=3.7e-15 Score=131.60 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=74.1
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
.++|||+||+.++|+++|+++|++||.|++|+++.++ +|.++|||||+|.+.++|.+|+ +|||..++|+.|.|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4689999999999999999999999999999999885 7899999999999999999999 8999999999999999874
No 283
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1e-15 Score=130.97 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=71.0
Q ss_pred ccCCceeEEecCCCC-CCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCC--ceecCeeEEE
Q 006316 318 KFEGLNLYVKNLDDS-ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG--KMVVSKPLYV 394 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~--~~~~g~~l~V 394 (650)
..++++|||+||+++ +|+++|+++|++||.|++|+|++ +||||||+|.+.++|.+|++.|++ ..+.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999998 99999999999999999999974 478999999999999999998864 5699999999
Q ss_pred EecchhH
Q 006316 395 ALAQRKE 401 (650)
Q Consensus 395 ~~a~~~~ 401 (650)
.+++++.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9997654
No 284
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1.7e-15 Score=128.90 Aligned_cols=80 Identities=21% Similarity=0.535 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
..+++|||+|||.++++++|+++|+.||.|.+|++.+|. +++++|||||+|.+.++|++|++ ++..++|+.|+|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356899999999999999999999999999999999997 99999999999999999999997 888899999999887
Q ss_pred ccC
Q 006316 117 YRD 119 (650)
Q Consensus 117 ~~~ 119 (650)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 654
No 285
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.2e-15 Score=126.72 Aligned_cols=77 Identities=25% Similarity=0.303 Sum_probs=72.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecC-----eeEE
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS-----KPLY 393 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g-----~~l~ 393 (650)
...++|||+|||+++|+++|+++|++||.|++|+|+.+ |||||+|.+.++|.+|++.|||..++| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 35679999999999999999999999999999999886 799999999999999999999999999 9999
Q ss_pred EEecchhH
Q 006316 394 VALAQRKE 401 (650)
Q Consensus 394 V~~a~~~~ 401 (650)
|.+++++.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99998754
No 286
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=9.2e-16 Score=129.20 Aligned_cols=81 Identities=26% Similarity=0.523 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~----~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
.++++|||+|||.++++++|+ ++|++||.|.+|++.+ +++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 457899999999999999999 9999999999999874 577889999999999999999999999999999999
Q ss_pred ccccccCc
Q 006316 113 IMYSYRDP 120 (650)
Q Consensus 113 v~~s~~~~ 120 (650)
|.|+..+.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99987654
No 287
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.4e-15 Score=124.47 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=72.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec--CeeEEEEe
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV--SKPLYVAL 396 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~--g~~l~V~~ 396 (650)
...++|||+||+.++|+++|+++|++||.|+++++..+ +|||||+|.+.++|.+|++.||+..++ |+.|.|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 45679999999999999999999999999999999865 789999999999999999999999999 99999999
Q ss_pred cchh
Q 006316 397 AQRK 400 (650)
Q Consensus 397 a~~~ 400 (650)
++++
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9865
No 288
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=1.1e-15 Score=136.76 Aligned_cols=83 Identities=14% Similarity=0.255 Sum_probs=74.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
.....++|||+|||+++||++|+++|+.|| |++|+|++|+. ++++|||||+|.+.++|++|+ .+|+..|.|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 345678999999999999999999999999 66999999965 999999999999999999999 789999999999998
Q ss_pred ccccCc
Q 006316 115 YSYRDP 120 (650)
Q Consensus 115 ~s~~~~ 120 (650)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 876543
No 289
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=5e-15 Score=127.18 Aligned_cols=79 Identities=29% Similarity=0.580 Sum_probs=72.5
Q ss_pred hccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
.....++|||+||+.++|+++|+++|++||.|+++++. +|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999998 67999999999999999999999999999999999
Q ss_pred cchhHH
Q 006316 397 AQRKEE 402 (650)
Q Consensus 397 a~~~~~ 402 (650)
++.+..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987654
No 290
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.8e-15 Score=126.00 Aligned_cols=77 Identities=17% Similarity=0.411 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 36 QFVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 36 ~~~~~~L~V~nLp~-~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
..++++|||+|||+ ++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.||+..+.|++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45679999999998 99999999999999999999984 5799999999999999999999999999999999
Q ss_pred ccccCc
Q 006316 115 YSYRDP 120 (650)
Q Consensus 115 ~s~~~~ 120 (650)
|+....
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 986553
No 291
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.1e-15 Score=121.88 Aligned_cols=76 Identities=18% Similarity=0.452 Sum_probs=71.2
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+||+.++|+++|+++|++||.|+++++. +|||||+|.+.++|.+|++.||+..++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 456799999999999999999999999999999998 5699999999999999999999999999999999997
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
.+.
T Consensus 79 ~~~ 81 (90)
T 2dnq_A 79 NKS 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 292
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=6.5e-15 Score=132.99 Aligned_cols=79 Identities=33% Similarity=0.470 Sum_probs=74.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||..+|+++|+++|++||.|++++++.++ +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 456799999999999999999999999999999999885 7899999999999999999999999999999999999985
No 293
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=5.4e-15 Score=127.61 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 36 QFVSTSLYVGDLDLS-VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~-vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+++|||+|||.+ +|+++|+++|++||.|.+|++ ++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999998 46899999999999999999999999999999999
Q ss_pred ccccCc
Q 006316 115 YSYRDP 120 (650)
Q Consensus 115 ~s~~~~ 120 (650)
|+....
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987543
No 294
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=3.9e-15 Score=125.21 Aligned_cols=76 Identities=17% Similarity=0.470 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 36 QFVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 36 ~~~~~~L~V~nLp~-~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
..++++|||+|||. ++++++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34679999999998 99999999999999999999983 5799999999999999999999999999999999
Q ss_pred ccccC
Q 006316 115 YSYRD 119 (650)
Q Consensus 115 ~s~~~ 119 (650)
|+...
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 88643
No 295
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.3e-15 Score=126.54 Aligned_cols=79 Identities=24% Similarity=0.464 Sum_probs=74.0
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
....++|||+||+..+++++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 456789999999999999999999999999999999976 789999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+.+.
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 296
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=1.1e-14 Score=122.57 Aligned_cols=76 Identities=21% Similarity=0.405 Sum_probs=70.8
Q ss_pred ccCCceeEEecCCC-CCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
...+++|||+||+. ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44678999999998 99999999999999999999983 78999999999999999999999999999999999
Q ss_pred cchh
Q 006316 397 AQRK 400 (650)
Q Consensus 397 a~~~ 400 (650)
++.+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 297
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.9e-15 Score=133.52 Aligned_cols=84 Identities=20% Similarity=0.356 Sum_probs=76.4
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEE-EEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~-~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||+++|+++|+++|+.||.|.++ .+..+.+|+++|||||+|.+.++|.+|+. ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356799999999999999999999999999884 55556689999999999999999999999 9999999999999999
Q ss_pred chhHHH
Q 006316 398 QRKEER 403 (650)
Q Consensus 398 ~~~~~r 403 (650)
..++..
T Consensus 102 ~~~~~~ 107 (124)
T 1wel_A 102 TKKGML 107 (124)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 987753
No 298
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.57 E-value=3.9e-15 Score=126.86 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.+.++|||+|||+++|+++|+++|+.||.|.+|++.+ |||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4579999999999999999999999999999999874 39999999999999999999999999999999998
Q ss_pred ccCcc
Q 006316 117 YRDPT 121 (650)
Q Consensus 117 ~~~~~ 121 (650)
.....
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 76543
No 299
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-15 Score=127.31 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=70.0
Q ss_pred ccCCceeEE--ecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee-----cCe
Q 006316 318 KFEGLNLYV--KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-----VSK 390 (650)
Q Consensus 318 ~~~~~~l~V--~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~-----~g~ 390 (650)
..++.+||| +||++++|+++|+++|++||.|++|.+.. +||||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 345678999 66999999999999999999999998864 378999999999999999999999998 689
Q ss_pred eEEEEecchh
Q 006316 391 PLYVALAQRK 400 (650)
Q Consensus 391 ~l~V~~a~~~ 400 (650)
+|+|.|++..
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999998743
No 300
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.9e-15 Score=119.82 Aligned_cols=76 Identities=28% Similarity=0.438 Sum_probs=70.8
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh-CCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM-NGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l-~~~~~~g~~l~V~~ 396 (650)
....++|||+|||.++++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| ++..++|+.|.|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 345679999999999999999999999999999999874 789999999999999999999 99999999999999
Q ss_pred cc
Q 006316 397 AQ 398 (650)
Q Consensus 397 a~ 398 (650)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 301
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=3.6e-15 Score=139.96 Aligned_cols=84 Identities=27% Similarity=0.466 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...++++|||+|||.++++++|+++|+.||.|.+|.|..+. +++++|||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ccccC
Q 006316 115 YSYRD 119 (650)
Q Consensus 115 ~s~~~ 119 (650)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98654
No 302
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=2e-15 Score=132.51 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=75.1
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeE--EEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTIT--SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
...++|||+|||+++|+++|+++|+.| .|+ +|+|+.+++|+++|||||+|.+.++|.+|++. ++..++|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 356789999999999999999999999 677 89999998899999999999999999999985 77999999999999
Q ss_pred cchhHH
Q 006316 397 AQRKEE 402 (650)
Q Consensus 397 a~~~~~ 402 (650)
+.+++.
T Consensus 118 a~~~e~ 123 (126)
T 2hgm_A 118 SSQEEV 123 (126)
T ss_dssp ECHHHH
T ss_pred CCHHHh
Confidence 987664
No 303
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.8e-15 Score=127.48 Aligned_cols=76 Identities=24% Similarity=0.296 Sum_probs=70.8
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
..++|||+|||..+|+++|+++|++||.|.+|++.. ++|||||+|.+.++|.+|++.|||..++|+.|+|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 457899999999999999999999999999998874 578999999999999999999999999999999999875
Q ss_pred h
Q 006316 400 K 400 (650)
Q Consensus 400 ~ 400 (650)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 304
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=3.8e-15 Score=126.45 Aligned_cols=76 Identities=25% Similarity=0.499 Sum_probs=72.3
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhH
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~ 401 (650)
++|||+|||.++|+++|+++|++||.|.++++..+ ++|||||+|.+.++|.+|++.|||..++|+.|.|.+++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999987 78999999999999999999999999999999999998764
No 305
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=120.63 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
....++|||+|||.++|+++|+++|+.||.|.+| ..+..+++ ||||+|.+.++|++|++ ||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 55656655 99999999999999998 999999999999998
Q ss_pred cccCc
Q 006316 116 SYRDP 120 (650)
Q Consensus 116 s~~~~ 120 (650)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 76543
No 306
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.3e-15 Score=130.78 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCE----EEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQV----VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V----~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
...++|||+|||+++||++|+++|+.||+| .+|++++| .+++++|||||+|.+.++|++|++. |+..|.|+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999986 69999999 5899999999999999999999986 99999999999
Q ss_pred ccccc
Q 006316 113 IMYSY 117 (650)
Q Consensus 113 v~~s~ 117 (650)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 87654
No 307
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=120.60 Aligned_cols=77 Identities=23% Similarity=0.455 Sum_probs=71.5
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
....++|||+|||.++|+++|+++|++||.|+++++.++ ||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 346689999999999999999999999999999999854 9999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+.+.
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7653
No 308
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=120.41 Aligned_cols=76 Identities=26% Similarity=0.511 Sum_probs=71.1
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
....++|||+|||.++|+++|+++|++||.|.++++.++ ||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 346779999999999999999999999999999999854 9999999999999999999999999999999999
Q ss_pred chh
Q 006316 398 QRK 400 (650)
Q Consensus 398 ~~~ 400 (650)
+++
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 309
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=6.8e-15 Score=124.34 Aligned_cols=78 Identities=26% Similarity=0.441 Sum_probs=72.5
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+|||..+|+++|+++|++||.|+++++.++ +|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 45679999999999999999999999999999999854 7899999999999999999999999999999999997
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
++.
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 310
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=1.1e-14 Score=124.12 Aligned_cols=77 Identities=27% Similarity=0.531 Sum_probs=71.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+||+.++|+++|+++|++||.|.+|++++ +||||+|.+.++|.+|++.||+..++|+.|.|.++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 3467899999999999999999999999999999874 499999999999999999999999999999999998
Q ss_pred hhHH
Q 006316 399 RKEE 402 (650)
Q Consensus 399 ~~~~ 402 (650)
.+..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7653
No 311
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.2e-15 Score=124.83 Aligned_cols=78 Identities=27% Similarity=0.421 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccC-ccCCCCccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF-TPLNGKPIRIM 114 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~-V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~-~~i~g~~i~v~ 114 (650)
.+.++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|+|++|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45789999999999999999999999999 6666552 468999999999999999999999 99999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
|+.....
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9876543
No 312
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.1e-15 Score=125.64 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=71.5
Q ss_pred ceeEEecC----CCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCC----HHH----HHHHHH--HhCCce
Q 006316 322 LNLYVKNL----DDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFST----AEE----ASKALT--EMNGKM 386 (650)
Q Consensus 322 ~~l~V~nl----~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~----~~~----A~~A~~--~l~~~~ 386 (650)
+.|||+|| ++.+++++|+++|+.||.|.+++++.|+ +|+++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999998 78999999999996 433 889988 789999
Q ss_pred ecCeeEEEEecchh
Q 006316 387 VVSKPLYVALAQRK 400 (650)
Q Consensus 387 ~~g~~l~V~~a~~~ 400 (650)
|+|+.|+|.+.+.-
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999997643
No 313
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.8e-15 Score=123.47 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=71.2
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+||+.++|+++|+++|++||.|. ++++.+ .++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3467999999999999999999999999997 666653 678999999999999999999999999999999999997
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
++
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 314
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=122.21 Aligned_cols=79 Identities=27% Similarity=0.409 Sum_probs=71.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~Fs~~--G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
....++++|||+|||+++|+++|+++|++| |.|.+|++. +|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567999999999999999999999999 999999875 3599999999999999999999999999999
Q ss_pred cccccccCc
Q 006316 112 RIMYSYRDP 120 (650)
Q Consensus 112 ~v~~s~~~~ 120 (650)
+|.|+....
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999987654
No 315
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=3e-15 Score=119.52 Aligned_cols=74 Identities=23% Similarity=0.397 Sum_probs=69.5
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
+|||+|||.++|+++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++. ++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999998886 689999999999999999999985 899999999999875
No 316
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=3.4e-14 Score=120.90 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=74.6
Q ss_pred cCCceeEEecCCC-----CCCHHHHHHHHhhcCCeEEEEEeeCC--CCCCcceEEEEcCCHHHHHHHHHHhCCceecCee
Q 006316 319 FEGLNLYVKNLDD-----SISDDKLKELFSEFGTITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391 (650)
Q Consensus 319 ~~~~~l~V~nl~~-----~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 391 (650)
.++++|+|+|+.. +.++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|.+|++.|||+.++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4677999999963 23789999999999999999999876 3689999999999999999999999999999999
Q ss_pred EEEEecchhHH
Q 006316 392 LYVALAQRKEE 402 (650)
Q Consensus 392 l~V~~a~~~~~ 402 (650)
|+|.++....-
T Consensus 86 i~v~~a~~~~f 96 (105)
T 2pe8_A 86 VKACFYNLDKF 96 (105)
T ss_dssp CEEEECCHHHH
T ss_pred EEEEEcCHHHh
Confidence 99999987543
No 317
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=1.4e-15 Score=136.05 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=75.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+|||+++|+++|+++|++|| |++|+|+.+++|+++|||||+|.+.++|.+|+ ++|+..++|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3567899999999999999999999999 77999999989999999999999999999999 899999999999999887
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
.++
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 318
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=120.55 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...+.++|||+|| ++|+++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456799999996 89999999999999999999984 567899999999999999999999999999999999
Q ss_pred ccccCcc
Q 006316 115 YSYRDPT 121 (650)
Q Consensus 115 ~s~~~~~ 121 (650)
|+...+.
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9876544
No 319
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=1.1e-14 Score=136.66 Aligned_cols=83 Identities=34% Similarity=0.495 Sum_probs=78.6
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..+++|||+||+..+++++|+++|+.||.|++|+|..+.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45689999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 643
No 320
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=4.7e-15 Score=126.13 Aligned_cols=81 Identities=23% Similarity=0.486 Sum_probs=75.9
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
..++|||+||+.++++++|+++|+.||.|.+++++.+.+|.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4578999999999999999999999999999999999999999999999999999999998 99999999999999987
Q ss_pred hHH
Q 006316 400 KEE 402 (650)
Q Consensus 400 ~~~ 402 (650)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 654
No 321
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=1.5e-14 Score=131.61 Aligned_cols=77 Identities=19% Similarity=0.340 Sum_probs=70.7
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecC--eeEEEEecch
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS--KPLYVALAQR 399 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~V~~a~~ 399 (650)
..|||+||++.+|+++|+++|++||.|++|+++.+. ++|||||+|.+.++|.+|++.|||+.|.| +.|+|.|++.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 468999999999999999999999999999997653 57899999999999999999999999965 9999999987
Q ss_pred hH
Q 006316 400 KE 401 (650)
Q Consensus 400 ~~ 401 (650)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 63
No 322
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=9.1e-15 Score=122.80 Aligned_cols=80 Identities=25% Similarity=0.258 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEE-EEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~-v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
....++|||+|||+++|+++|+++|+.||.|.+|+ +.++..++ .|||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999999999994 88776554 49999999999999999999999999999999
Q ss_pred ccccC
Q 006316 115 YSYRD 119 (650)
Q Consensus 115 ~s~~~ 119 (650)
|+...
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 98755
No 323
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=5.8e-15 Score=121.84 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
+.+++|||+|||++++|++|+++|++| .|.+|++. +++|||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999983 67899999999999999999999999999999999998
Q ss_pred ccCcc
Q 006316 117 YRDPT 121 (650)
Q Consensus 117 ~~~~~ 121 (650)
..+..
T Consensus 76 ~~~~~ 80 (88)
T 1wg1_A 76 PTDAL 80 (88)
T ss_dssp CCCCC
T ss_pred CCCce
Confidence 76643
No 324
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=6.6e-15 Score=126.22 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=71.2
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecc----hhH----HHHHcc--cccCcc
Q 006316 40 TSLYVGDL----DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA----AHE----ATRALD--ELNFTP 105 (650)
Q Consensus 40 ~~L~V~nL----p~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~----~~~----A~~Al~--~ln~~~ 105 (650)
+.|||+|| |+.++|.+|+++|+.||.|.+|.+..|+.|++|+|||||.|.+ +++ |.+|+. .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 434 899988 789999
Q ss_pred CCCCcccccccc
Q 006316 106 LNGKPIRIMYSY 117 (650)
Q Consensus 106 i~g~~i~v~~s~ 117 (650)
|.|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998654
No 325
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=2.4e-14 Score=118.23 Aligned_cols=78 Identities=17% Similarity=0.404 Sum_probs=63.9
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee--cCeeEEEE
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVA 395 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~--~g~~l~V~ 395 (650)
....++|||+|||+++|+++|+++|++||.|++|+++.+ ++|||||+|.+.++|.+ +++..+ .|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 346789999999999999999999999999999999885 79999999999999983 566655 59999999
Q ss_pred ecchhHHH
Q 006316 396 LAQRKEER 403 (650)
Q Consensus 396 ~a~~~~~r 403 (650)
++.++..+
T Consensus 80 ~a~~k~~~ 87 (89)
T 3d2w_A 80 NAEPKHNK 87 (89)
T ss_dssp ECC-----
T ss_pred EcCCCCcC
Confidence 99877643
No 326
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=3.6e-15 Score=125.31 Aligned_cols=80 Identities=16% Similarity=0.390 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..+.++|||+|||.++|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467999999999999999999999999987665 25789999999999999999999999999999999999999
Q ss_pred cccCc
Q 006316 116 SYRDP 120 (650)
Q Consensus 116 s~~~~ 120 (650)
+....
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 86543
No 327
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=8.5e-15 Score=122.98 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=70.5
Q ss_pred cCCceeEEecCCC-CCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+|||. .+|+++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4678999999998 99999999999999999999984 679999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+.+.
T Consensus 81 ~~~~ 84 (96)
T 2kvi_A 81 SSNA 84 (96)
T ss_dssp ECCC
T ss_pred CcCC
Confidence 7654
No 328
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=2.3e-14 Score=130.34 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCC--Ccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG--KPIRIMY 115 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g--~~i~v~~ 115 (650)
...+|||+||++++||++|+++|++||.|.+|++..+ +++|||||+|.+.++|++|++.||+..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3467999999999999999999999999999999754 356899999999999999999999999966 9999999
Q ss_pred cccC
Q 006316 116 SYRD 119 (650)
Q Consensus 116 s~~~ 119 (650)
+...
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8765
No 329
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=6.3e-15 Score=123.78 Aligned_cols=79 Identities=27% Similarity=0.414 Sum_probs=72.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+||+..+|+++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 356799999999999999999999999988776 4468899999999999999999999999999999999999997
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
.+.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 330
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=8.2e-16 Score=130.59 Aligned_cols=81 Identities=27% Similarity=0.396 Sum_probs=73.0
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeC-CCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
...++|||+||+.++|+++|+++|+.||.|.+ .++.+ .+|+++|||||+|.+.++|.+|++ |||..++|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999999888 44444 468899999999999999999998 9999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+.+.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 331
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=126.78 Aligned_cols=80 Identities=30% Similarity=0.471 Sum_probs=72.7
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCe----EEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEE
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTI----TSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i----~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V 394 (650)
..+++|||+|||.++|+++|+++|+.||.| ..+++. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 356899999999999999999999999998 455544 6889999999999999999999999999999999999
Q ss_pred EecchhH
Q 006316 395 ALAQRKE 401 (650)
Q Consensus 395 ~~a~~~~ 401 (650)
.++..+.
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 9998764
No 332
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=2.8e-14 Score=125.05 Aligned_cols=75 Identities=19% Similarity=0.336 Sum_probs=69.4
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcce-EEEEcCCHHHHHHHHHHhCCceecC--eeEEEEecch
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS-GFVAFSTAEEASKALTEMNGKMVVS--KPLYVALAQR 399 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~-~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~V~~a~~ 399 (650)
.|||+||++.+|+++|+++|++||.|.+|+++.+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++.
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 5889999999999999999999999999998875 3677 9999999999999999999999987 9999999987
Q ss_pred hH
Q 006316 400 KE 401 (650)
Q Consensus 400 ~~ 401 (650)
+.
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 333
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.9e-16 Score=134.64 Aligned_cols=85 Identities=21% Similarity=0.450 Sum_probs=78.5
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEE--------EEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecC
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITS--------CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g 389 (650)
...++|||+||+..+++++|+++|++||.|.+ ++++.+. +|+++|||||+|.+.++|.+|++.|||..++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35678999999999999999999999999999 8898885 68999999999999999999999999999999
Q ss_pred eeEEEEecchhHHH
Q 006316 390 KPLYVALAQRKEER 403 (650)
Q Consensus 390 ~~l~V~~a~~~~~r 403 (650)
+.|.|.+++++..+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999877643
No 334
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=121.69 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=73.2
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
....++|||+||+.++|+++|+++|+.|+ .++++.+. ++.++|||||+|.+.++|.+|++.||+..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999884 66777765 789999999999999999999999999999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98764
No 335
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=2.1e-14 Score=118.50 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=69.7
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.|||..++|+.|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35789999999999999999999999 99999884 5789999999999999999999999999999999999864
Q ss_pred h
Q 006316 400 K 400 (650)
Q Consensus 400 ~ 400 (650)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 336
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=120.92 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=69.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCC-eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCC-ceecCeeEEEEe
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT-ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG-KMVVSKPLYVAL 396 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~-~~~~g~~l~V~~ 396 (650)
...++|||+||+.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 35678999999999999999999999999 6666663 478999999999999999999999 999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
++++.
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98653
No 337
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=118.79 Aligned_cols=76 Identities=32% Similarity=0.476 Sum_probs=69.9
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
...++|||+|+ ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 45679999996 89999999999999999999984 568999999999999999999999999999999999997
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
++.
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 338
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=8.4e-15 Score=132.79 Aligned_cols=84 Identities=27% Similarity=0.471 Sum_probs=73.5
Q ss_pred ccCCceeEEecCCCCCCHHHHHHHHhhcCCeEEE------EEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCee
Q 006316 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC------KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391 (650)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~------~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 391 (650)
....++|||+||+..+|+++|+++|+.||.|.++ .+....+|+++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3467899999999999999999999999998874 1222246889999999999999999999999999999999
Q ss_pred EEEEecchhH
Q 006316 392 LYVALAQRKE 401 (650)
Q Consensus 392 l~V~~a~~~~ 401 (650)
|.|.+++...
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997644
No 339
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=3.4e-15 Score=135.38 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEE-----EeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-----CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v-----~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~ 110 (650)
..++++|||+|||.++|+++|+++|+.||.|.++.+ ++...+++++|||||.|.+.++|.+|++.||+..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456789999999999999999999999999877411 222247889999999999999999999999999999999
Q ss_pred ccccccccC
Q 006316 111 IRIMYSYRD 119 (650)
Q Consensus 111 i~v~~s~~~ 119 (650)
|+|.|+...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998654
No 340
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=2.9e-14 Score=122.99 Aligned_cols=74 Identities=23% Similarity=0.552 Sum_probs=69.6
Q ss_pred CCceeEEecCCCC-CCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDS-ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..++|||+||+++ +|+++|+++|++||.|++|++ ++|||||+|.+.++|.+|++.||+..++|+.|.|.+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4579999999999 999999999999999999998 47899999999999999999999999999999999987
Q ss_pred hh
Q 006316 399 RK 400 (650)
Q Consensus 399 ~~ 400 (650)
..
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 341
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.8e-14 Score=114.88 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=63.9
Q ss_pred eeEEecCCCCCCHHH----HHHHHhhc-CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 323 NLYVKNLDDSISDDK----LKELFSEF-GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~----l~~~F~~~-G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
.|||+||++.+++++ |+++|++| |+|.+| .| |+|||.|.+.++|.+|++.|+|..+.||+|+|++|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 499999999999988 55899999 599999 22 89999999999999999999999999999999999
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
+.+.
T Consensus 82 ~~~s 85 (96)
T 2diu_A 82 PKNR 85 (96)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8654
No 342
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.6e-14 Score=117.52 Aligned_cols=76 Identities=33% Similarity=0.507 Sum_probs=70.3
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhc--CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEe
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEF--GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~ 396 (650)
...++|||+||+..+|+++|+++|++| |.|.++++. +|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456799999999999999999999999 999999875 56999999999999999999999999999999999
Q ss_pred cchhH
Q 006316 397 AQRKE 401 (650)
Q Consensus 397 a~~~~ 401 (650)
++++.
T Consensus 86 a~~~~ 90 (99)
T 2cpd_A 86 AKPVD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97653
No 343
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.49 E-value=2.5e-14 Score=118.09 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=63.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..+..+|||+|||+++||++|+++|++||.|.+|++.++ |+|||||+|.+.++|+++... ...++|+.|+|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~--~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE--DLIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC--EEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC--CcccCCEEEEEEE
Confidence 345689999999999999999999999999999999874 789999999999999964432 3346799999988
Q ss_pred cccC
Q 006316 116 SYRD 119 (650)
Q Consensus 116 s~~~ 119 (650)
+...
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 7643
No 344
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=2.9e-14 Score=117.31 Aligned_cols=73 Identities=22% Similarity=0.534 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT 104 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~----G-------~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~ 104 (650)
..++++|||+|||.++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|++|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3567999999999999999999999999 8 9999998765 589999999999999999 99999
Q ss_pred cCCCCcccccc
Q 006316 105 PLNGKPIRIMY 115 (650)
Q Consensus 105 ~i~g~~i~v~~ 115 (650)
.|+|+.|+|..
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999864
No 345
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=5.7e-14 Score=123.04 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccE-EEEEecchhHHHHHcccccCccCCC--Cccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALDELNFTPLNG--KPIRIM 114 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~-a~V~F~~~~~A~~Al~~ln~~~i~g--~~i~v~ 114 (650)
.-.+|||+||+..+||++|+++|++||.|.+|++.++. +|+ |||+|.+.++|++|++.||+..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34678899999999999999999999999999998752 466 9999999999999999999999988 889999
Q ss_pred ccccC
Q 006316 115 YSYRD 119 (650)
Q Consensus 115 ~s~~~ 119 (650)
|++..
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 98755
No 346
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=8.7e-14 Score=121.42 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=67.6
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcce-EEEEcCCHHHHHHHHHHhCCceecC--eeEEEEecch
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS-GFVAFSTAEEASKALTEMNGKMVVS--KPLYVALAQR 399 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~-~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~V~~a~~ 399 (650)
.|||+||++.+|+++|+++|++||.|.+|+++.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 4789999999999999999999999999999763 276 9999999999999999999999987 6899999986
Q ss_pred hH
Q 006316 400 KE 401 (650)
Q Consensus 400 ~~ 401 (650)
+.
T Consensus 102 ~~ 103 (124)
T 2e5i_A 102 TR 103 (124)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 347
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.9e-14 Score=123.20 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=68.8
Q ss_pred CCCCCEEEE--cCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccC-----CC
Q 006316 36 QFVSTSLYV--GDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL-----NG 108 (650)
Q Consensus 36 ~~~~~~L~V--~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i-----~g 108 (650)
..++++||| |||+.++||++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.||+..| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345789999 77999999999999999999999998864 258999999999999999999999887 67
Q ss_pred CcccccccccCc
Q 006316 109 KPIRIMYSYRDP 120 (650)
Q Consensus 109 ~~i~v~~s~~~~ 120 (650)
++|.|.+...-+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 888887765443
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=2.4e-14 Score=124.46 Aligned_cols=71 Identities=24% Similarity=0.252 Sum_probs=64.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
...++|||+|||.++||++|+++|++||.|.+|.|++| |||||+|.+.++|++|++.||+..|+|+.+++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 45689999999999999999999999999999999876 799999999999999999999999999994443
No 349
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=5.1e-14 Score=122.39 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=66.2
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCee-----EEE
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP-----LYV 394 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~-----l~V 394 (650)
..++|||+||++++|+++|+++|++||.|++|+|+.+ |||||+|.+.++|.+|++.|||..|+|+. |.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4578999999999999999999999999999999876 79999999999999999999999999998 666
Q ss_pred Eecch
Q 006316 395 ALAQR 399 (650)
Q Consensus 395 ~~a~~ 399 (650)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 65554
No 350
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=124.19 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCC---CccccEEEEEecchhHHHHHcccccCccCCCCcccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t---~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v 113 (650)
..+++|||+|||+++||++|+++|++||.|. +.++.+..+ ++++|||||+|.+.++|++|++.|+. ++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4578999999999999999999999999998 888888777 69999999999999999999998843 67777766
Q ss_pred ccc
Q 006316 114 MYS 116 (650)
Q Consensus 114 ~~s 116 (650)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 351
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.5e-14 Score=117.99 Aligned_cols=79 Identities=24% Similarity=0.371 Sum_probs=71.3
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEE-EeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCK-VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~-i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..++|||+|||.++|+++|+++|++||.|.+++ ++.+.. .|.|||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467899999999999999999999999999995 777643 3349999999999999999999999999999999998
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
+++
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 763
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.6e-14 Score=117.90 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.++++|||+|||.++||++|+++|++||+|.+|++.++ ++|||||+|.+.++|++|+.. ...+.|+.|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45799999999999999999999999999999999864 678999999999999987643 45579999999988
Q ss_pred ccCcc
Q 006316 117 YRDPT 121 (650)
Q Consensus 117 ~~~~~ 121 (650)
.....
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65543
No 353
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=1.3e-13 Score=120.30 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccE-EEEEecchhHHHHHcccccCccCCC--Ccccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALDELNFTPLNG--KPIRIMY 115 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~-a~V~F~~~~~A~~Al~~ln~~~i~g--~~i~v~~ 115 (650)
...|||+||++.+|+++|+++|++||.|.+|++.+. + |+ |||+|.+.++|.+|++.||+..|.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----N-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----S-SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----C-CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999999752 2 75 9999999999999999999999988 5889988
Q ss_pred cccC
Q 006316 116 SYRD 119 (650)
Q Consensus 116 s~~~ 119 (650)
+...
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 8654
No 354
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=8.2e-14 Score=116.42 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=66.9
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
..++|||+||++++|+++|+++|+.||.|.+| +....+|+ ||||+|.+.++|.+|+. |||..++|+.|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 34689999999999999999999999999998 33333444 99999999999999999 999999999999998765
Q ss_pred h
Q 006316 400 K 400 (650)
Q Consensus 400 ~ 400 (650)
+
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=8.6e-14 Score=118.38 Aligned_cols=83 Identities=8% Similarity=0.096 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHHHhcCCCEEEEEEEeeCCC-CccccEEEEEecchhHHHHHcccccCccCCCC
Q 006316 36 QFVSTSLYVGDLDL-----SVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (650)
Q Consensus 36 ~~~~~~L~V~nLp~-----~vte~~L~~~Fs~~G~V~~i~v~~d~~t-~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~ 109 (650)
..++++|+|.||-. +-++++|++.|++||.|.+|+|+++..+ ++++|||||.|.+.++|.+|++.||+..|.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34679999999963 2378999999999999999999998654 68999999999999999999999999999999
Q ss_pred ccccccccc
Q 006316 110 PIRIMYSYR 118 (650)
Q Consensus 110 ~i~v~~s~~ 118 (650)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998754
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=7.6e-14 Score=122.24 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccc
Q 006316 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~ 115 (650)
..++++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346799999996 79999999999999999999985 5678999999999999999999999999999999999
Q ss_pred cccCcc
Q 006316 116 SYRDPT 121 (650)
Q Consensus 116 s~~~~~ 121 (650)
+...+.
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 876543
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=1.9e-13 Score=119.73 Aligned_cols=76 Identities=32% Similarity=0.476 Sum_probs=70.1
Q ss_pred cCCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
..+++|||+|+ ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 46789999996 69999999999999999999986 468999999999999999999999999999999999998
Q ss_pred hhH
Q 006316 399 RKE 401 (650)
Q Consensus 399 ~~~ 401 (650)
.+.
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=1.6e-13 Score=130.60 Aligned_cols=79 Identities=14% Similarity=0.296 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~ 117 (650)
..++|||+|||.++|+++|.++|++||+|.+|+++++. +++++|||||+|.+.++|++|++.++ ..|+|++|+|.|..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999985 58999999999999999999997765 48999999999865
Q ss_pred c
Q 006316 118 R 118 (650)
Q Consensus 118 ~ 118 (650)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.44 E-value=3.2e-13 Score=110.99 Aligned_cols=70 Identities=20% Similarity=0.496 Sum_probs=65.9
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhc----C-------CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEF----G-------TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G-------~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~ 388 (650)
..++|||+|||.++++++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45789999999999999999999999 8 8999998865 789999999999999999 99999999
Q ss_pred CeeEEEE
Q 006316 389 SKPLYVA 395 (650)
Q Consensus 389 g~~l~V~ 395 (650)
|+.|.|.
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999987
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=3.6e-13 Score=114.59 Aligned_cols=84 Identities=17% Similarity=0.315 Sum_probs=72.7
Q ss_pred cCCceeEEecC--CCCCC--------HHHHHHHHhhcCCeEEEEEeeCCCC---CCcceEEEEcCCHHHHHHHHHHhCCc
Q 006316 319 FEGLNLYVKNL--DDSIS--------DDKLKELFSEFGTITSCKVMRDPNG---ISRGSGFVAFSTAEEASKALTEMNGK 385 (650)
Q Consensus 319 ~~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~g---~s~g~~fV~f~~~~~A~~A~~~l~~~ 385 (650)
.+++.|.|+|+ +..+. +++|+++|++||.|++|+|+++..+ +++||+||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 33333 3799999999999999999988743 68999999999999999999999999
Q ss_pred eecCeeEEEEecchhHH
Q 006316 386 MVVSKPLYVALAQRKEE 402 (650)
Q Consensus 386 ~~~g~~l~V~~a~~~~~ 402 (650)
.++||.|.|.++....-
T Consensus 83 ~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDSY 99 (105)
T ss_dssp EETTEECEEEEECHHHH
T ss_pred EeCCCEEEEEEeCHHHH
Confidence 99999999999876653
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.9e-13 Score=118.64 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=68.2
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-C---CCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-N---GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~---g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
..++|||+||++++|+++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|.+|++.|+ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 467899999999999999999999999999 7777665 3 7999999999999999999999995 4788888887
Q ss_pred ecchh
Q 006316 396 LAQRK 400 (650)
Q Consensus 396 ~a~~~ 400 (650)
.+...
T Consensus 84 ~~~~~ 88 (114)
T 2dnl_A 84 SSPTI 88 (114)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 66543
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=4.7e-13 Score=127.39 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=73.9
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecch
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~ 399 (650)
..++|||+|||.++|+++|+++|++||.|.+|++.++.+|.++|||||+|.+.++|.+|+..++ ..++|+.|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 3468999999999999999999999999999999999889999999999999999999997665 589999999999865
Q ss_pred hH
Q 006316 400 KE 401 (650)
Q Consensus 400 ~~ 401 (650)
-.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-13 Score=113.24 Aligned_cols=74 Identities=20% Similarity=0.416 Sum_probs=65.0
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCc--eecCeeEEEEec
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVALA 397 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~--~~~g~~l~V~~a 397 (650)
..++|||+|||.++|+++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+| ++. .+.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEec
Confidence 4679999999999999999999999999999999875 789999999999999754 444 448999999998
Q ss_pred chhH
Q 006316 398 QRKE 401 (650)
Q Consensus 398 ~~~~ 401 (650)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=3e-13 Score=131.59 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccC
Q 006316 36 QFVSTSLYVGDLDLSV---------NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL 106 (650)
Q Consensus 36 ~~~~~~L~V~nLp~~v---------te~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i 106 (650)
....++|||+||+.++ +|++|+++|++||.|.+|+|++ ++|||||.|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 7999999999999999999985 468999999999999999999999999
Q ss_pred ------------CCCcccccccccCcc
Q 006316 107 ------------NGKPIRIMYSYRDPT 121 (650)
Q Consensus 107 ------------~g~~i~v~~s~~~~~ 121 (650)
.|+.|+|.|+..++.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.39 E-value=1.7e-13 Score=116.37 Aligned_cols=62 Identities=19% Similarity=0.392 Sum_probs=56.8
Q ss_pred HHHHHHH-hhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEec
Q 006316 336 DKLKELF-SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (650)
Q Consensus 336 ~~l~~~F-~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a 397 (650)
++|+++| ++||.|++|+|.++.+++++|||||+|.+.++|.+|++.|||+.++||.|+|.++
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 3444555 9999999999999888899999999999999999999999999999999999986
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=6.6e-13 Score=129.15 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=70.6
Q ss_pred cCCceeEEecCCCCC---------CHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee--
Q 006316 319 FEGLNLYVKNLDDSI---------SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-- 387 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~---------t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~-- 387 (650)
...++|||+||+..+ ++++|+++|++||.|++|+|+. ++|||||+|.+.++|+.|++.|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 356799999999998 7999999999999999999986 488999999999999999999999999
Q ss_pred ----------cCeeEEEEecchhHH
Q 006316 388 ----------VSKPLYVALAQRKEE 402 (650)
Q Consensus 388 ----------~g~~l~V~~a~~~~~ 402 (650)
.|+.|.|.||.....
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC----
T ss_pred cccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.1e-12 Score=113.83 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=72.6
Q ss_pred cCCceeEEecCCC--C---CCHHHHHHHHhhcCCeEEEEEeeCCC-----CCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006316 319 FEGLNLYVKNLDD--S---ISDDKLKELFSEFGTITSCKVMRDPN-----GISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (650)
Q Consensus 319 ~~~~~l~V~nl~~--~---~t~~~l~~~F~~~G~i~~~~i~~~~~-----g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~ 388 (650)
.++++|+|+|+-. + -.++||+++|++||.|++|+|+++.. ++++||+||+|.+.++|.+|++.|||+.++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678999999942 2 23689999999999999999998753 467899999999999999999999999999
Q ss_pred CeeEEEEecchhH
Q 006316 389 SKPLYVALAQRKE 401 (650)
Q Consensus 389 g~~l~V~~a~~~~ 401 (650)
||.|.|.++....
T Consensus 98 GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 98 GRKVVAEVYDQER 110 (118)
T ss_dssp TEECEEEEECHHH
T ss_pred CcEEEEEEcChHh
Confidence 9999999987644
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.7e-12 Score=112.10 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=69.6
Q ss_pred cCCceeEEecCCCCCC-----------HHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee
Q 006316 319 FEGLNLYVKNLDDSIS-----------DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t-----------~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~ 387 (650)
..+++|+|+||....+ +++|+++|++||.|++|.| .+. .++|||||+|.+.++|.+|+..|||+.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4577899999955443 5899999999999999966 443 3899999999999999999999999999
Q ss_pred cCeeEEEEecchhH
Q 006316 388 VSKPLYVALAQRKE 401 (650)
Q Consensus 388 ~g~~l~V~~a~~~~ 401 (650)
+|+.|.|.++..+.
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999987653
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.1e-12 Score=111.53 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=72.0
Q ss_pred CCCCCCCEEEEcCCCCCCC-----------HHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHccccc
Q 006316 34 ARQFVSTSLYVGDLDLSVN-----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN 102 (650)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vt-----------e~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln 102 (650)
....++++|+|.||-...+ +++|+++|++||.|.+|.| .|. .++|||||.|.+.++|++|++.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3456789999999954432 6899999999999999966 443 378999999999999999999999
Q ss_pred CccCCCCcccccccccCccc
Q 006316 103 FTPLNGKPIRIMYSYRDPTI 122 (650)
Q Consensus 103 ~~~i~g~~i~v~~s~~~~~~ 122 (650)
+..|.|++|+|.|+......
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999998765443
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.32 E-value=1.4e-12 Score=110.90 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=72.0
Q ss_pred CCCCEEEEcCC--CCCCC--------HHHHHHHHhcCCCEEEEEEEeeCCC--CccccEEEEEecchhHHHHHcccccCc
Q 006316 37 FVSTSLYVGDL--DLSVN--------DSQLYDLFNQMGQVVSVRVCRDLST--RRSLGYGYVNYNAAHEATRALDELNFT 104 (650)
Q Consensus 37 ~~~~~L~V~nL--p~~vt--------e~~L~~~Fs~~G~V~~i~v~~d~~t--~~s~G~a~V~F~~~~~A~~Al~~ln~~ 104 (650)
.+++.|.|.|+ +.++. +++|++.|++||+|.+|+|+++..+ ++++|+|||.|.+.++|.+|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36789999998 43443 4789999999999999999998765 468999999999999999999999999
Q ss_pred cCCCCccccccccc
Q 006316 105 PLNGKPIRIMYSYR 118 (650)
Q Consensus 105 ~i~g~~i~v~~s~~ 118 (650)
.+.||.|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999988653
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=1.5e-11 Score=105.72 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=70.5
Q ss_pred cCCceeEEecCCCCCC----------HHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006316 319 FEGLNLYVKNLDDSIS----------DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (650)
Q Consensus 319 ~~~~~l~V~nl~~~~t----------~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~ 388 (650)
.+++.|.++|+-..-. ++||+++|++||.|++|.|.++. ++||+||+|.+.++|.+|++.|||+.++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3567899999854322 36899999999999999997663 5899999999999999999999999999
Q ss_pred CeeEEEEecchhHHHH
Q 006316 389 SKPLYVALAQRKEERR 404 (650)
Q Consensus 389 g~~l~V~~a~~~~~r~ 404 (650)
||.|+|.++....-..
T Consensus 82 GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 82 GKMITAAYVPLPTYHN 97 (114)
T ss_dssp TEECEEEEECHHHHHH
T ss_pred CEEEEEEEEcHHHHHH
Confidence 9999999998665543
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-11 Score=102.43 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=65.5
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 39 STSLYVGDLD-------LSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 39 ~~~L~V~nLp-------~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
..+|.|.-.. .++||++|+++|++||.|.+|+|+ ++++|||||+|.+.++|++|++.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5688887765 458999999999999999999998 36789999999999999999987554 689999
Q ss_pred cccccccCcc
Q 006316 112 RIMYSYRDPT 121 (650)
Q Consensus 112 ~v~~s~~~~~ 121 (650)
+|.|+...+.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999876644
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=5.2e-13 Score=113.43 Aligned_cols=72 Identities=28% Similarity=0.503 Sum_probs=64.2
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcc
Q 006316 44 VGDLDLSVNDSQLYDLF------------NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (650)
Q Consensus 44 V~nLp~~vte~~L~~~F------------s~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i 111 (650)
+.+|+.++++++|.++| ++||+|.+|+|+++. +++++|||||.|.+.++|.+|++.||+..+.||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677778888777666 999999999999985 47899999999999999999999999999999999
Q ss_pred ccccc
Q 006316 112 RIMYS 116 (650)
Q Consensus 112 ~v~~s 116 (650)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 374
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.28 E-value=3.8e-12 Score=110.32 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHHHhcCCCEEEEEEEeeCC----CCccccEEEEEecchhHHHHHcccccCccCCC
Q 006316 38 VSTSLYVGDLDL--SV---NDSQLYDLFNQMGQVVSVRVCRDLS----TRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (650)
Q Consensus 38 ~~~~L~V~nLp~--~v---te~~L~~~Fs~~G~V~~i~v~~d~~----t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g 108 (650)
++++|+|.|+-. ++ -+++|++.|++||+|.+|+|+++.. +++++|++||.|.+.++|.+|++.||+..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 679999999932 22 3789999999999999999999965 45788999999999999999999999999999
Q ss_pred Cccccccccc
Q 006316 109 KPIRIMYSYR 118 (650)
Q Consensus 109 ~~i~v~~s~~ 118 (650)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999988653
No 375
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.22 E-value=1.7e-11 Score=125.78 Aligned_cols=77 Identities=25% Similarity=0.477 Sum_probs=67.4
Q ss_pred ccCCceeEEec--CCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec---Ce--
Q 006316 318 KFEGLNLYVKN--LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SK-- 390 (650)
Q Consensus 318 ~~~~~~l~V~n--l~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~---g~-- 390 (650)
..++.+|||+| |+..+||++|+++|++||+|++|.+.. +||||||+|.+.++|.+|++.|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45677999999 589999999999999999999987754 4789999999999999999999999883 44
Q ss_pred eEEEEecch
Q 006316 391 PLYVALAQR 399 (650)
Q Consensus 391 ~l~V~~a~~ 399 (650)
.|+|.|...
T Consensus 90 ~ly~~~~~~ 98 (345)
T 3tht_A 90 TLYLNFVEK 98 (345)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEeec
Confidence 789999853
No 376
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5e-11 Score=99.89 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchh
Q 006316 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (650)
Q Consensus 331 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~ 400 (650)
..+++++|+++|++||.|++|+|+ ++++|||||+|.+.++|.+|++.+++ +.+++|.|.|++.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 568999999999999999999998 46899999999999999999998554 67999999998755
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.10 E-value=6.7e-11 Score=121.31 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=59.1
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccC
Q 006316 35 RQFVSTSLYVGD--LDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL 106 (650)
Q Consensus 35 ~~~~~~~L~V~n--Lp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i 106 (650)
.+.++.+|||+| |+.++||++|+++|++||.|.+|++.+ ++|||||+|.+.+||++|++.||+..+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 356789999999 578999999999999999999987753 468999999999999999999999876
No 378
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.09 E-value=1e-10 Score=100.60 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCCCEEEEcCCCCCCC----------HHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccC
Q 006316 37 FVSTSLYVGDLDLSVN----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL 106 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vt----------e~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i 106 (650)
.+++.|.|.|+=..-. +++|++.|++||.|.+|.|.++. ++|+|||.|.+.++|.+|++.||+..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678999999843221 46889999999999999997762 589999999999999999999999999
Q ss_pred CCCcccccccc
Q 006316 107 NGKPIRIMYSY 117 (650)
Q Consensus 107 ~g~~i~v~~s~ 117 (650)
.||.|+|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999998864
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=8.9e-10 Score=94.70 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=72.1
Q ss_pred hccCCceeEEecCCCC-CCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCC-HHHHHHHHHHhC--CceecCeeE
Q 006316 317 DKFEGLNLYVKNLDDS-ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST-AEEASKALTEMN--GKMVVSKPL 392 (650)
Q Consensus 317 ~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~-~~~A~~A~~~l~--~~~~~g~~l 392 (650)
.-..++.|||+||++. +++++|+++|+.||.|..|.+..+.. .|||.|.+ .++|..|+..++ +..|.|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 4567899999999999 99999999999999999999998854 79999999 899999999995 778899999
Q ss_pred EEEecchhHH
Q 006316 393 YVALAQRKEE 402 (650)
Q Consensus 393 ~V~~a~~~~~ 402 (650)
.+.+..-.++
T Consensus 89 ~~evL~GeeE 98 (121)
T 1owx_A 89 TWEVLEGEVE 98 (121)
T ss_dssp EEEECCHHHH
T ss_pred EEEECCCHHH
Confidence 9988765544
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.4e-09 Score=87.29 Aligned_cols=75 Identities=24% Similarity=0.410 Sum_probs=64.2
Q ss_pred ccCCceeEEecCC----CCCCH----HHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecC
Q 006316 318 KFEGLNLYVKNLD----DSISD----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (650)
Q Consensus 318 ~~~~~~l~V~nl~----~~~t~----~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g 389 (650)
.++..+|+|.-.+ .++.+ .+|.+.|++||+|..+++..+ .+||+|.+.++|.+|++ |||..++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 3456678887766 34444 678999999999999999987 49999999999999998 99999999
Q ss_pred eeEEEEecchh
Q 006316 390 KPLYVALAQRK 400 (650)
Q Consensus 390 ~~l~V~~a~~~ 400 (650)
|.|+|+++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998753
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=3.1e-09 Score=91.27 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecc-hhHHHHHccccc--CccCCCCccc
Q 006316 37 FVSTSLYVGDLDLS-VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA-AHEATRALDELN--FTPLNGKPIR 112 (650)
Q Consensus 37 ~~~~~L~V~nLp~~-vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~-~~~A~~Al~~ln--~~~i~g~~i~ 112 (650)
.+.+.|||+||+.+ +++++|+++|+.||.|..|.+.++.. .|||.|.+ .++|..|++.|| +..|+|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45799999999999 99999999999999999999998865 49999999 799999999985 6778888777
Q ss_pred ccc
Q 006316 113 IMY 115 (650)
Q Consensus 113 v~~ 115 (650)
+..
T Consensus 90 ~ev 92 (121)
T 1owx_A 90 WEV 92 (121)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 382
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=9.8e-09 Score=82.42 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=62.5
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCC
Q 006316 37 FVSTSLYVGDLDL----SVND----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (650)
Q Consensus 37 ~~~~~L~V~nLp~----~vte----~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g 108 (650)
.+..+|+|.-++. +.-. .+|.+.|++||.|.++++..|. +||+|.+.++|.+|++ ||+..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567899988762 2322 6788999999999999999873 8999999999999997 99999999
Q ss_pred CcccccccccC
Q 006316 109 KPIRIMYSYRD 119 (650)
Q Consensus 109 ~~i~v~~s~~~ 119 (650)
|.|+|.+...+
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999876543
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.4e-08 Score=81.90 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=63.8
Q ss_pred hccCCceeEEecCCCC-----CCH----HHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee
Q 006316 317 DKFEGLNLYVKNLDDS-----ISD----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387 (650)
Q Consensus 317 ~~~~~~~l~V~nl~~~-----~t~----~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~ 387 (650)
..++..+|+|.-++.. +.+ .+|.+.|+.||+|..+++..+ -+||+|.+.++|.+|++ |+|..+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeee
Confidence 3567778999988632 333 578899999999999999988 49999999999999998 999999
Q ss_pred cCeeEEEEecc
Q 006316 388 VSKPLYVALAQ 398 (650)
Q Consensus 388 ~g~~l~V~~a~ 398 (650)
+||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999864
No 384
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.74 E-value=1.4e-08 Score=98.92 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHhhcCCeEEEEEeeCC-----CCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecchhHH
Q 006316 332 SISDDKLKELFSEFGTITSCKVMRDP-----NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402 (650)
Q Consensus 332 ~~t~~~l~~~F~~~G~i~~~~i~~~~-----~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~~~~~ 402 (650)
.-.+++|++.|++||.|.+++|.++. +++++|++||+|.+.++|.+|+..|||+.++||.|.+.+.....-
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f 215 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERF 215 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHh
Confidence 34578999999999999999998654 348999999999999999999999999999999999999986543
No 385
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.61 E-value=4.7e-08 Score=95.11 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=61.5
Q ss_pred CCHHHHHHHHhcCCCEEEEEEEeeCCCC----ccccEEEEEecchhHHHHHcccccCccCCCCccccccccc
Q 006316 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTR----RSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (650)
Q Consensus 51 vte~~L~~~Fs~~G~V~~i~v~~d~~t~----~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~ 118 (650)
-.+++|++.|++||.|.++.|+++..++ +++|++||+|.+.++|.+|++.||+..+.||.|++.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3568999999999999999999776543 8999999999999999999999999999999999988653
No 386
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=3.3e-08 Score=79.71 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=62.0
Q ss_pred CCCCCCEEEEcCCCCC------CCH---HHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCcc
Q 006316 35 RQFVSTSLYVGDLDLS------VND---SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105 (650)
Q Consensus 35 ~~~~~~~L~V~nLp~~------vte---~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~ 105 (650)
-..+..+|+|.-++.+ -++ .+|.+.|+.||.|+.+++..|. +||+|.+.++|.+|++ ||+..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3456789999998743 221 5688999999999999999883 8999999999999997 99999
Q ss_pred CCCCccccccc
Q 006316 106 LNGKPIRIMYS 116 (650)
Q Consensus 106 i~g~~i~v~~s 116 (650)
|+||.|+|.+-
T Consensus 82 v~Gr~L~V~~k 92 (95)
T 1ufw_A 82 VKGRAVKISGP 92 (95)
T ss_dssp ETTEEEEEECC
T ss_pred eCCeEEEEecc
Confidence 99999999753
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=4.1e-06 Score=68.76 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=67.9
Q ss_pred CCceeEEecCCCCCCHHHHHHHHhhc-----CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEE
Q 006316 320 EGLNLYVKNLDDSISDDKLKELFSEF-----GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (650)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~-----G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V 394 (650)
..++|-+-|||+.+++..|+.+..+| |.|+.+.+..|. +=|+|+|.|...|-+|.-.|+|..|+|+.|++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 46789999999999999999999999 999999999884 36999999999999999999999999999998
Q ss_pred Eecc
Q 006316 395 ALAQ 398 (650)
Q Consensus 395 ~~a~ 398 (650)
.-..
T Consensus 95 gTv~ 98 (117)
T 2l9w_A 95 GTIN 98 (117)
T ss_dssp ECHH
T ss_pred cCHH
Confidence 7543
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=4.8e-05 Score=62.08 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhc-----CCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccc
Q 006316 38 VSTSLYVGDLDLSVNDSQLYDLFNQ-----MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (650)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~Fs~-----~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~ 112 (650)
-.++|.|.|||++++++.|.-+|+. -|+|.++.... +-|+|.|.+.++|++.|++ ....|++.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3589999999999999999999976 26999998865 2599999999999999965 45678899998
Q ss_pred ccccccCcccccCCCceeEecCCCcccc
Q 006316 113 IMYSYRDPTIRKSGAGNIFIKNLDKSID 140 (650)
Q Consensus 113 v~~s~~~~~~~~~~~~~l~V~nLp~~i~ 140 (650)
|...... ...+|++.+|++.++
T Consensus 78 V~P~~~~------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC------CcceEeeecCCCCCC
Confidence 8653322 345799999998765
No 389
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=6.7e-05 Score=61.62 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=66.2
Q ss_pred CCceeEecCCCcccchHHHHhhhccc-----CceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEE
Q 006316 126 GAGNIFIKNLDKSIDNKALHDTFSTF-----GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200 (650)
Q Consensus 126 ~~~~l~V~nLp~~i~~~~L~~~Fs~~-----G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 200 (650)
..++|-+-|||..++...|+.++..+ |.|..+.+..|- +=|+|+|++...|-+|.-.|+|.+|.|++|.+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 35689999999999999999999999 999999998863 34999999999999999999999999999999
Q ss_pred ccc
Q 006316 201 GPF 203 (650)
Q Consensus 201 ~~~ 203 (650)
+..
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 754
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=5e-05 Score=62.32 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=62.8
Q ss_pred CEEEEcCCCCCC-CH----HHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccc
Q 006316 40 TSLYVGDLDLSV-ND----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (650)
Q Consensus 40 ~~L~V~nLp~~v-te----~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~ 114 (650)
.+|+|.||+.+| .. +.++++|+.|+++.+....+.= .-..|+|.+.++|.+|...|++..+.|++++|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 689999999866 22 5678999999999898887642 247999999999999999999999999999999
Q ss_pred cccc
Q 006316 115 YSYR 118 (650)
Q Consensus 115 ~s~~ 118 (650)
+.+.
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9873
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=0.00016 Score=59.25 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=63.0
Q ss_pred CceeEEecCCCCC-CH----HHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEE
Q 006316 321 GLNLYVKNLDDSI-SD----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (650)
Q Consensus 321 ~~~l~V~nl~~~~-t~----~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~ 395 (650)
.++|+|.||+.++ +. +.++++|..|+.+.+...++.- .-..|.|.+.++|.+|...||+..+.|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4579999998766 22 5778999999999888877652 257899999999999999999999999999999
Q ss_pred ecc
Q 006316 396 LAQ 398 (650)
Q Consensus 396 ~a~ 398 (650)
|++
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 998
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.49 E-value=0.00024 Score=57.37 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=58.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCc--cccEEEEEecchhHHHHHcccccCccCCC
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR--SLGYGYVNYNAAHEATRALDELNFTPLNG 108 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~--s~G~a~V~F~~~~~A~~Al~~ln~~~i~g 108 (650)
++|.|++||+.+||+++.+.++.+..+.....+..+.+.. ...-|||+|.+.+++....+.+++..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5899999999999999999999998888888877765433 33689999999999999999988776543
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.0011 Score=53.98 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=69.8
Q ss_pred CCceeEecCCCcccchHHHHhhhcc---c--CceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecCeeeEE
Q 006316 126 GAGNIFIKNLDKSIDNKALHDTFST---F--GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200 (650)
Q Consensus 126 ~~~~l~V~nLp~~i~~~~L~~~Fs~---~--G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 200 (650)
...+|.|.|||.+++++.|.-+|+. - |.|.++.... +-|+|+|.+.+.|++.+++ ..+.|++..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 4568999999999999999999976 2 4788777642 5699999999999999964 356788889999
Q ss_pred cccccccccccccccccccceeccCCCCCCC
Q 006316 201 GPFLRKQERESTADKTRFNNVYVKNLSETTT 231 (650)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t 231 (650)
.++..+ ...++++.+|+..++
T Consensus 79 ~P~~~~----------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPR----------APARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCC----------CCCCCCCCSCCCCCC
T ss_pred EcCCCC----------CcceEeeecCCCCCC
Confidence 775443 336789999988764
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.00 E-value=0.0051 Score=49.54 Aligned_cols=67 Identities=9% Similarity=0.219 Sum_probs=57.2
Q ss_pred ceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC---CCCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006316 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP---NGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (650)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~---~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~ 388 (650)
++|.|++||..+|++++.+.++....+....+...+ ......-|+|.|.+.+++....+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 479999999999999999999999988877776654 2234457899999999999999999999883
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.63 E-value=0.0053 Score=49.40 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=46.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN 102 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln 102 (650)
...++| +.|+.+...||.++|+.||.| .|+=+-| | .|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--T-----EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 467778 999999999999999999965 5555554 2 69999999999999998654
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.49 E-value=0.0056 Score=51.68 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=55.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCC-cccccc
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK-PIRIMY 115 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~-~i~v~~ 115 (650)
...+.|.|-+.|+. .-..|.+.|++||.|++..... . ..+..|.|.++.+|++||.+ |+..|.|. .|-|.+
T Consensus 22 ~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~---~---~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSN---T---GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECS---S---SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCC---C---CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 34689999999997 4677889999999999887621 1 23899999999999999965 98888753 344443
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.29 E-value=0.002 Score=52.23 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=52.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCc--cccEEEEEecchhHHHHHcccccCccCCC
Q 006316 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR--SLGYGYVNYNAAHEATRALDELNFTPLNG 108 (650)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~--s~G~a~V~F~~~~~A~~Al~~ln~~~i~g 108 (650)
..+-+|.|+.||+.+||+++.+.++.+=.+.....+..+.+.+ ...-|||+|.+.+|.....+.+++..+.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3567899999999999999998887764444434433332221 22469999999999999999988766533
No 398
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.17 E-value=0.011 Score=47.53 Aligned_cols=53 Identities=30% Similarity=0.438 Sum_probs=44.6
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~ 383 (650)
.++| ++|.++.-.||.++|+.||.| .|+.+.|. .|||.|.+++.|..|++.+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999954 56666663 79999999999999998763
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.15 E-value=0.0032 Score=66.59 Aligned_cols=56 Identities=7% Similarity=0.191 Sum_probs=44.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ 100 (650)
.++|+|. .|..+++.+|.++|++||+|.++...+++. -||.|+|.+.+++..+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 6899998 799999999999999999999999887643 3999999999999988755
No 400
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.09 E-value=0.02 Score=48.26 Aligned_cols=72 Identities=14% Similarity=0.309 Sum_probs=58.1
Q ss_pred CceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCceecC-eeeEEccccc
Q 006316 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLR 205 (650)
Q Consensus 127 ~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~g-~~l~v~~~~~ 205 (650)
.+-|.|-+.+... ...|...|+.||+|++.... ....+-.|.|.+..+|++|+. .||+.|.+ ..|-|.++..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCC
Confidence 4678999999984 77888999999999987752 145789999999999999996 59999974 6677766543
No 401
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.01 Score=47.87 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=45.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHccccc
Q 006316 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN 102 (650)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln 102 (650)
..++| +.|+.+...||.++|+.||.| .|+=+-| | .|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 45677 999999999999999999954 5665555 2 69999999999999998754
No 402
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.75 E-value=0.013 Score=47.34 Aligned_cols=53 Identities=28% Similarity=0.388 Sum_probs=45.2
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~ 383 (650)
.++| ++|.++.-.||.++|+.|| =..|+.+.|. .|||.|.+++.|..|++.+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 4566 9999999999999999999 4456666663 79999999999999999774
No 403
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.07 E-value=0.048 Score=44.14 Aligned_cols=77 Identities=10% Similarity=0.205 Sum_probs=55.9
Q ss_pred CceeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCC--C-CCCcceEEEEcCCHHHHHHHHHHhCCceecC-----eeE
Q 006316 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP--N-GISRGSGFVAFSTAEEASKALTEMNGKMVVS-----KPL 392 (650)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~--~-g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g-----~~l 392 (650)
+-+|.|++||..+||+++.+.++..=.+......... . ...-.-|+|.|.+.++.....+.++|+.+.+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4479999999999999999998876555433333322 1 1223468999999999999999999998832 234
Q ss_pred EEEec
Q 006316 393 YVALA 397 (650)
Q Consensus 393 ~V~~a 397 (650)
.|.+|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55555
No 404
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.81 E-value=0.034 Score=47.53 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=55.3
Q ss_pred CCceeEecCCCcccchHHHHhhhcccCceeEE-EEeeCC-------------CC-CcccEEEEEECCHHHHHHHHHhhCC
Q 006316 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSC-KVATDS-------------LG-QSRGYGFVQFDNEESAKSAIDKLNG 190 (650)
Q Consensus 126 ~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~-~v~~d~-------------~g-~skg~afV~F~~~e~A~~Ai~~lng 190 (650)
+...|.|-+.|++. ...+.+.|++||.|++- ....+. .+ ...++-.|+|.+..+|.+|+. .||
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 34568888887765 55677899999998762 111100 00 135678999999999999995 599
Q ss_pred ceecCeeeEEcccc
Q 006316 191 MLLNDKQVFVGPFL 204 (650)
Q Consensus 191 ~~i~g~~l~v~~~~ 204 (650)
..|.|..|-|.++.
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887774
No 405
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.95 E-value=0.019 Score=49.06 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=52.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEEeeCC--------CC-----ccccEEEEEecchhHHHHHcccccCc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVS-VRVCRDLS--------TR-----RSLGYGYVNYNAAHEATRALDELNFT 104 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~-i~v~~d~~--------t~-----~s~G~a~V~F~~~~~A~~Al~~ln~~ 104 (650)
...|.|-+-|++ ....+.+.|++||.|++ +.+.++.. +. ....+..|.|.+..+|.+||.+ |+.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 356777777765 56667789999999876 22211000 00 1234889999999999999965 999
Q ss_pred cCCCCccccccc
Q 006316 105 PLNGKPIRIMYS 116 (650)
Q Consensus 105 ~i~g~~i~v~~s 116 (650)
.|.|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999976666554
No 406
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.13 E-value=0.039 Score=58.39 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=42.8
Q ss_pred CCceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHh
Q 006316 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187 (650)
Q Consensus 126 ~~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~ 187 (650)
..++|+|. .+..+++++|.+.|++||.|.++.+..+ ...|+.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----SSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----CCeEEEEEeCCHHHHHHHHhc
Confidence 45689997 7999999999999999999999877654 347999999999999977753
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.77 E-value=3.5 Score=44.29 Aligned_cols=55 Identities=22% Similarity=0.368 Sum_probs=45.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEeeCCCCccccEEEEEecchhHHHHHccccc
Q 006316 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN 102 (650)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~Fs~~G~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln 102 (650)
...++|+ +|..+...+|.++|+.||.| +|+-+-| | .|||.|.+.++|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--S-----EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--C-----eEEEEECCHHHHHHHHHHHH
Confidence 3578887 88999999999999999964 6654433 2 69999999999999998765
No 408
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.29 E-value=6.5 Score=42.19 Aligned_cols=53 Identities=30% Similarity=0.436 Sum_probs=43.7
Q ss_pred eeEEecCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC
Q 006316 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~ 383 (650)
.++|+ ++..+...+|.+.|+.||.| +|+.+.+. .+||.|.+.+.|..+++.++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS------EEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC------eEEEEECCHHHHHHHHHHHH
Confidence 45555 88899999999999999954 56655542 79999999999999999885
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=45.47 E-value=42 Score=25.13 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHhhcC-----CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCeeEEEEecc
Q 006316 331 DSISDDKLKELFSEFG-----TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (650)
Q Consensus 331 ~~~t~~~l~~~F~~~G-----~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~V~~a~ 398 (650)
+.++..+|..++..-+ .|-.+++..+ |.||.-.. +.|..++..|++..+.|+.+.|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4556677777776544 4666777665 88888876 45788999999999999999988764
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=40.18 E-value=1.3e+02 Score=23.33 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred CceeEecCCCcccchHHHHhhhcccCceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCC-------ceecCeeeE
Q 006316 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG-------MLLNDKQVF 199 (650)
Q Consensus 127 ~~~l~V~nLp~~i~~~~L~~~Fs~~G~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng-------~~i~g~~l~ 199 (650)
.+-|.|-|+|..+-..++.-...-.|--.-|.. -.|.|.+.|.+.++-+.|+.+|-+ .++.|..+.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdy-------idgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDY-------IDGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEE-------CSSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeee-------ecCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Q ss_pred Ecccccccccc
Q 006316 200 VGPFLRKQERE 210 (650)
Q Consensus 200 v~~~~~~~~~~ 210 (650)
|....+..+..
T Consensus 85 vistipedeek 95 (129)
T 4eyt_A 85 VISTIPEDEEK 95 (129)
T ss_dssp EECCCCHHHHH
T ss_pred eeecCCchhhh
No 411
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=37.32 E-value=65 Score=24.03 Aligned_cols=58 Identities=12% Similarity=0.293 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhcC-C----CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCccccccc
Q 006316 50 SVNDSQLYDLFNQM-G----QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (650)
Q Consensus 50 ~vte~~L~~~Fs~~-G----~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s 116 (650)
.++..+|...+..- | .|-.|++..+ |.||+-.. +.|..+++.|+...++|+.++|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 46667777766543 3 4777777543 78888754 4577888888999999999988654
No 412
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=36.25 E-value=17 Score=25.16 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=18.9
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 006316 599 TEVLHLLESPEALKAKVAEAM 619 (650)
Q Consensus 599 ~~~~~~~~~~~~l~~~~~~a~ 619 (650)
..|++||.+.+.+-.+|.||+
T Consensus 18 qaLihLIqnD~~Fl~~IHeAY 38 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVY 38 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 348999999999999999997
No 413
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=30.67 E-value=17 Score=24.58 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=18.3
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 006316 600 EVLHLLESPEALKAKVAEAM 619 (650)
Q Consensus 600 ~~~~~~~~~~~l~~~~~~a~ 619 (650)
.|+|||.+.+.+-.|+.||+
T Consensus 17 al~hLiknD~~Fl~~iHeAY 36 (46)
T 2wx4_A 17 AFTYLIQNDKEFANKLHKAY 36 (46)
T ss_dssp HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHH
Confidence 48899999999999999997
No 414
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=26.80 E-value=76 Score=18.73 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006316 609 EALKAKVAEAMEVLRNVAQ 627 (650)
Q Consensus 609 ~~l~~~~~~a~~~l~~~~~ 627 (650)
+.|+.||+|--++|+....
T Consensus 9 ~lLKKKIEEQr~i~~~~~H 27 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKTHH 27 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5789999999999987654
No 415
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=25.89 E-value=2.9e+02 Score=23.11 Aligned_cols=113 Identities=8% Similarity=0.045 Sum_probs=60.0
Q ss_pred CHHHHHHHHhcCC-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHcccccCccCCCCcccccccccCcccccCCCcee
Q 006316 52 NDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNI 130 (650)
Q Consensus 52 te~~L~~~Fs~~G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ln~~~i~g~~i~v~~s~~~~~~~~~~~~~l 130 (650)
.-.+|...|+..| .|..|.+... . ..|+.-+.+.+.+.|.++++.+ |-.+.. . .+
T Consensus 19 ~l~~i~~~la~~~inI~~i~~~~~---~-~~~~~~~~~~d~~~a~~~L~~~------G~~v~~--~------------sv 74 (144)
T 2f06_A 19 RLTEVTEVLAKENINLSALCIAEN---A-DFGILRGIVSDPDKAYKALKDN------HFAVNI--T------------DV 74 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEC---S-SCEEEEEEESCHHHHHHHHHHT------TCCEEE--E------------EE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEec---C-CCCEEEEEeCCHHHHHHHHHHc------CCeEee--e------------eE
Confidence 3477888888776 6777665421 1 1132223355666666666543 211111 0 12
Q ss_pred EecCCCccc-chHHHHhhhcccC-ceeEEEEeeCCCCCcccEEEEEECCHHHHHHHHHhhCCce
Q 006316 131 FIKNLDKSI-DNKALHDTFSTFG-NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (650)
Q Consensus 131 ~V~nLp~~i-~~~~L~~~Fs~~G-~I~~~~v~~d~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (650)
+.-.++... .-..+.+.+...| +|..+.... . ..+....+.+++.+.|.++++. .|..
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~--~~~~~~~i~~~d~~~A~~~L~~-~g~~ 134 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-N--NNVANVVIRPSNMDKCIEVLKE-KKVD 134 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-E--TTEEEEEEEESCHHHHHHHHHH-TTCE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-c--CCcEEEEEEeCCHHHHHHHHHH-cCCE
Confidence 221232221 3345556666555 565544432 1 1456777899999999999976 4443
No 416
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.75 E-value=1.8e+02 Score=22.66 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=43.5
Q ss_pred eeEEecCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHH
Q 006316 323 NLYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381 (650)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~ 381 (650)
+-|+-..+...+..+|++.++. || .|.++..+.-++| ..-|+|++....+|....+.
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS--CEEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC--ceEEEEEcCCCCcHHHHHHh
Confidence 5677778889999999999987 66 6888877765543 33589999988777766554
No 417
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=24.02 E-value=1.5e+02 Score=28.26 Aligned_cols=49 Identities=16% Similarity=0.391 Sum_probs=41.8
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHhcC-------CCEEEEEEEeeCCCCccccEEEEE
Q 006316 39 STSLYVGDLDL-SVNDSQLYDLFNQM-------GQVVSVRVCRDLSTRRSLGYGYVN 87 (650)
Q Consensus 39 ~~~L~V~nLp~-~vte~~L~~~Fs~~-------G~V~~i~v~~d~~t~~s~G~a~V~ 87 (650)
.+.|-|..+.. .++|++|...+++| .++-.+.+.....+||++-|.|..
T Consensus 166 TTIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~i 222 (270)
T 4a8j_B 166 TTIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFIV 222 (270)
T ss_dssp SEEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEEE
T ss_pred hheEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEEE
Confidence 47788888887 67999999999987 478888988888999999998864
No 418
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.81 E-value=2.2e+02 Score=22.09 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=42.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-CC-CEEEEEEEeeCCCCccccEEEEEecchhHHHHHccc
Q 006316 41 SLYVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100 (650)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~Fs~-~G-~V~~i~v~~d~~t~~s~G~a~V~F~~~~~A~~Al~~ 100 (650)
.-|+-.++.+.+..++++.++. || .|.+|..+.-+.. .--|||.+....+|.....+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~---~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG---EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS---CEEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC---ceEEEEEcCCCCcHHHHHHh
Confidence 3466667789999999988866 55 7888888775422 23599999999888776544
No 419
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.30 E-value=1.3e+02 Score=26.67 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=0.0
Q ss_pred eeEecCCCc-c--------cchHHHHhhh--cccCceeEEEEeeCCCCCcccEEEEEECC
Q 006316 129 NIFIKNLDK-S--------IDNKALHDTF--STFGNILSCKVATDSLGQSRGYGFVQFDN 177 (650)
Q Consensus 129 ~l~V~nLp~-~--------i~~~~L~~~F--s~~G~I~~~~v~~d~~g~skg~afV~F~~ 177 (650)
.+.|-|++. . .+..+|.+.| +.|..+. ++...+..| +.|++.|.|.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecC
Done!