BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006318
         (650 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A6M334|GLGA_CLOB8 Glycogen synthase OS=Clostridium beijerinckii (strain ATCC 51743 /
           NCIMB 8052) GN=glgA PE=3 SV=1
          Length = 479

 Score = 34.3 bits (77), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 13/92 (14%)

Query: 244 FSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFI--------LPATPSLPAVIG 295
           F+P   +F   N  I+ +++ AI+   ++ +L LTV   I        L +   +  ++ 
Sbjct: 255 FNPKTDKFIKKNYSINSIEDKAINKTELQKELGLTVDKNIPMLAMVTRLTSQKGMDLLVN 314

Query: 296 ISDTVIED--RFGVRHGSDEWYEALDQHFKWL 325
           ISD ++++  +  +    D+ YE   +HFKWL
Sbjct: 315 ISDKLLQENVQLVILGTGDKHYE---EHFKWL 343


>sp|O36033|YLM1_SCHPO TPR repeat-containing protein C19B12.01 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=SPAC19B12.01 PE=4
           SV=2
          Length = 817

 Score = 33.1 bits (74), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 377 LSSNDGAKDYVRKEIE------LLRTKAHWKKAYFYLWDEPLNMEHYSSVRNMASELHAY 430
           L+  D A   +++E+E      LLRT          L D   N +HY     ++ +   +
Sbjct: 472 LNRQDLAVQVIKRELENDPYDFLLRT---------LLGDIENNPKHYVEAWELSCK--RF 520

Query: 431 APDARVLTTYYCGPSDAPLGPTPFESFVKVPKFLRPHTQIYCTSEWVLGNREDLVKDI-- 488
           AP  R L  YY    D       F   +K+     P    Y  +   L   +  ++    
Sbjct: 521 APAQRSLGKYYYKKGDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSR 580

Query: 489 VTELQPENGEEWWTYV-CMGPSDPHPN---WHLGMRGSQHRAVMWRVWK 533
              + PE+GE W      M  +  H     WH   +G ++    WR+W+
Sbjct: 581 CLSINPEDGESWNNLASAMLKAKDHTKEQAWHAMQQGIKYMYDNWRIWE 629


>sp|B0TX18|TRMD_FRAP2 tRNA (guanine-N(1)-)-methyltransferase OS=Francisella philomiragia
           subsp. philomiragia (strain ATCC 25017) GN=trmD PE=3
           SV=1
          Length = 255

 Score = 33.1 bits (74), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 24/107 (22%)

Query: 223 KPLHEVVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVR---------- 272
           +PL + ++ AKST     +V++       F+ N  +++++ D++  L  R          
Sbjct: 65  EPLSQAIKDAKSTLGYNTKVVYLSPQGSVFNHNKALELLENDSLILLCGRYEGVDERLIQ 124

Query: 273 --VKLSLTVWDFILPA--TPS----------LPAVIGISDTVIEDRF 305
             V   ++V DF+L     P+          LP V+G  D++IED F
Sbjct: 125 DYVDEEISVGDFVLSGGELPAMLVMDSLIRLLPEVLGNKDSMIEDSF 171


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,018,122
Number of Sequences: 539616
Number of extensions: 12263145
Number of successful extensions: 24372
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 24371
Number of HSP's gapped (non-prelim): 7
length of query: 650
length of database: 191,569,459
effective HSP length: 124
effective length of query: 526
effective length of database: 124,657,075
effective search space: 65569621450
effective search space used: 65569621450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)