BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006319
(650 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2
PE=1 SV=3
Length = 1042
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/652 (51%), Positives = 446/652 (68%), Gaps = 17/652 (2%)
Query: 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKE 60
M KLD D+EK +E +F +A+D LSD+DKKLPQV ++LPLLKRGIG+HH GLLPILKE
Sbjct: 406 MTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKE 465
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120
IEILF EGLIK LFATETF++G+NMPA+TV+FTN RKFDG FRWISSGEYIQMSGRAG
Sbjct: 466 TIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAG 525
Query: 121 RRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLL 180
RRG+D+RGI ILMVD+KM P+ K +LKGSAD LNSAFHL+YNM+LN +R EE +PE +L
Sbjct: 526 RRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYML 585
Query: 181 RNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240
SFYQFQ AIP + ++ K EE+ + +VI E+S+ YY + QQ L K++ + +
Sbjct: 586 EKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIH 645
Query: 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPE 300
PKYCLPFLQPGR V ++ GDD WGVV+ F K V N
Sbjct: 646 KPKYCLPFLQPGRLVKVK-NEGDD-----------FGWGVVVNFSKKSNV---KPNSGEL 690
Query: 301 DSNYTVNILTRCVV-SKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDL 359
D Y V +L RC S + + K E GE VV V + + +SS RL +PKDL
Sbjct: 691 DPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISSVRLYIPKDL 750
Query: 360 LPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEIS 418
P+ R+++LKS E R G+P LDP +MGI+ +K+++++EA E H +
Sbjct: 751 RPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLH 810
Query: 419 KSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVV 478
P +E + K ++ IKS KR+++ + + DELK RKRVLRRLG+ATS DV+
Sbjct: 811 NDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVI 870
Query: 479 ELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELEL 538
E+KG+VACEISSA+EL LTE++FNG+ D+ E+ +LLSCFV+QE + K E+L
Sbjct: 871 EMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAG 930
Query: 539 LFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFE 598
Q+Q+ A+R+AKV E K++ID E +++SF+P +M+ VY WA G+ F I ++T VFE
Sbjct: 931 PLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFE 990
Query: 599 GSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650
GS+IR +RRLEE+L+Q+ AAK+IG TELE KF E ++KIKRDIVFAASLYL
Sbjct: 991 GSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2
PE=2 SV=1
Length = 1040
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/652 (51%), Positives = 446/652 (68%), Gaps = 17/652 (2%)
Query: 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKE 60
M KLD D+EK +E +F +A+D LSD+DKKLPQV ++LPLLKRGIG+HH GLLPILKE
Sbjct: 404 MTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKE 463
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120
IEILF EGLIK LFATETF++G+NMPA+TV+FTN RK+DG FRWISSGEYIQMSGRAG
Sbjct: 464 TIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAG 523
Query: 121 RRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLL 180
RRG+D+RGI ILMVD+KM P+ K +LKGSAD LNSAFHL+YNM+LN +R EE +PE +L
Sbjct: 524 RRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYML 583
Query: 181 RNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240
SFYQFQ AIP + ++ K EE+ + +VI E+++ YY + QQ L K++ + +
Sbjct: 584 EKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIH 643
Query: 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPE 300
PKYCLPFLQPGR V ++ GDD WGVV+ F K V N
Sbjct: 644 KPKYCLPFLQPGRLVKVK-NEGDD-----------FGWGVVVNFSKKSNV---KPNSGEL 688
Query: 301 DSNYTVNILTRCVV-SKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDL 359
D Y V +L RC S + + K E GE VV V + + +S+ RL +PKDL
Sbjct: 689 DPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISTVRLYIPKDL 748
Query: 360 LPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEIS 418
P+ R+++LKS E R G+P LDP +MGI+ +K+++++EA E H +
Sbjct: 749 RPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLH 808
Query: 419 KSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVV 478
P +E + K ++ IKS KR+++ + + DELK RKRVLRRLG+ATS DV+
Sbjct: 809 NDPNLETVYTLCERKAQIALDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVI 868
Query: 479 ELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELEL 538
E+KG+VACEISSA+EL LTE++FNG+ D+ E+ +LLSCFV+QE + K E+L
Sbjct: 869 EMKGRVACEISSADELLLTEMMFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAG 928
Query: 539 LFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFE 598
Q+Q+ A+R+AKV E K++ID E +++SF+P +M+ VY WA G+ F I ++T VFE
Sbjct: 929 PLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFE 988
Query: 599 GSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650
GS+IR +RRLEE+L+Q+ AAK+IG TELE KF E ++KIKRDIVFAASLYL
Sbjct: 989 GSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1040
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust.
Identities = 311/658 (47%), Positives = 431/658 (65%), Gaps = 22/658 (3%)
Query: 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKE 60
M+KLD+ + E+ + TIF +A++ LS+ D++LPQ+ +ILPLL+RGIG+HHSGLLPILKE
Sbjct: 474 MSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRGIGIHHSGLLPILKE 533
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120
VIEILFQEGL+K LFATETFSIGLNMPAKTVVFTNVRKFDG FRWIS GEYIQMSGRAG
Sbjct: 534 VIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAG 593
Query: 121 RRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLL 180
RRG+D+RGI ILM+D+KM+P AK MLKG AD L+SAFHLSYNM+LN +R E SPE +L
Sbjct: 594 RRGLDDRGIVILMIDEKMDPPVAKSMLKGEADRLDSAFHLSYNMILNLLRVEGISPEFML 653
Query: 181 RNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240
F+QFQ +P LE + + ++ DS I +E L+ Y+ L Q + + DVR +V
Sbjct: 654 ERCFFQFQNSLEVPKLEAKLEESQQHYDSFTILDERPLEEYHTLKTQLERYRTDVRTVVN 713
Query: 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPE 300
P +CL FLQ GR V ++ D WGVV+ K + + + +N+
Sbjct: 714 HPNFCLSFLQGGRLVRVKVGNED------------FDWGVVVNVSK-RPLPKGQSNEYLP 760
Query: 301 DSNYTVNILTRCVVSKDGAGKKTLKIVP------LKESGEPLVVSVPISQIIKLSSARLP 354
+Y V+ L V S G + +P ++ G+ VV +S + ++ R+
Sbjct: 761 QESYIVHTLV-MVASDTGPLRIRSGHLPEVHPPAAEDKGKFEVVPFLLSSLDGIAHIRVF 819
Query: 355 MPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSYQKLVRRIEALESLFD 413
+P DL + + K+ SE R G+ LDP NM I+ ++ KL++++ LES
Sbjct: 820 LPNDLKSQGQKLTVGKALSEVKRRFPEGITLLDPVENMNIKEPTFIKLMKKVNILESRLL 879
Query: 414 KHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYAT 473
+ + +E+K K L ++K +K+++ + + DEL +RKRVLRRLG+ T
Sbjct: 880 SNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKARSIMQLDELNSRKRVLRRLGFTT 939
Query: 474 SDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQ-DASKP 532
SDDV+E+KG+VACEISS + L LTELIFNG+ D+ E+ +LLSC V+QEK + + +
Sbjct: 940 SDDVIEVKGRVACEISSGDGLLLTELIFNGMFNDLTPEQCAALLSCLVFQEKSEVENQRM 999
Query: 533 REELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIME 592
+EEL LQ+ ARR+AKV E K +++ E +VNSF+P +ME VYAWA G+ F +I +
Sbjct: 1000 KEELAGPLKILQEMARRIAKVSKESKQELNEEEYVNSFKPSLMEVVYAWAHGASFAQICK 1059
Query: 593 ITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650
+T V+EGSLIR RRLEE+++Q++ AAK IG T L+ K E+ ++ I RDIVF+ASLYL
Sbjct: 1060 MTDVYEGSLIRMFRRLEELIRQMVDAAKVIGNTSLQQKMEDTIACIHRDIVFSASLYL 1117
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 537 bits (1384), Expect = e-152, Method: Compositional matrix adjust.
Identities = 299/666 (44%), Positives = 428/666 (64%), Gaps = 34/666 (5%)
Query: 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKE 60
M+KLD DDEK + IF +A+ +L + D++LPQ+ +ILPLL+RGIG+HHSGLLPILKE
Sbjct: 426 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 485
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120
VIEILFQEG +K LFATETFSIGLNMPAKTVVFT+VRK+DG +FRW+S GEYIQMSGRAG
Sbjct: 486 VIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAG 545
Query: 121 RRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLL 180
RRG+D+RGI I+M+D+KMEP AK M+KG AD L+SAFHL YNM+LN +R E SPE +L
Sbjct: 546 RRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFML 605
Query: 181 RNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240
+SF+QFQ ++P +EK+ L+++ D + +E+E+++K Y+ + Q K ++DVR +V
Sbjct: 606 EHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVT 665
Query: 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEK------VKGVYEDD 294
P L FLQPGR V I G DN WG V++F K VY D
Sbjct: 666 HPANALSFLQPGRLVEISVN-GKDN----------YGWGAVVDFAKRINKRNPSAVYTD- 713
Query: 295 ANKKPEDSNYTVNILTRCVVSKDGAG-----KKTLK--IVPLKESGEPLVVSVPIS--QI 345
+Y VN++ + TL I P +E + + +PI+ I
Sbjct: 714 ------HESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICAVIPITLDSI 767
Query: 346 IKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSYQKLVRR 404
+ + RL MPKD+ +E + KS E R G+P LDP NM I + KL+++
Sbjct: 768 KSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKK 827
Query: 405 IEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKR 464
I+ L + + ++ S +E+ K +L +K +KR++ S + D+L+ RKR
Sbjct: 828 IDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKR 887
Query: 465 VLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQE 524
VLRRLG+ T +D++ELKG+VACEISS +EL LTELIFNG ++K E+ +LLSCF +QE
Sbjct: 888 VLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQE 947
Query: 525 KLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKG 584
+ ++A + + EL +++ A ++AK+ + K+++ + +V SFR ++ME VY W +G
Sbjct: 948 RCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRG 1007
Query: 585 SKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVF 644
+ F +I ++T V+EGSLIR +RLEE++++L+ A +IG + L+ K E + I RDIV
Sbjct: 1008 ATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVS 1067
Query: 645 AASLYL 650
A SLYL
Sbjct: 1068 AGSLYL 1073
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1
Length = 1026
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 271/653 (41%), Positives = 407/653 (62%), Gaps = 28/653 (4%)
Query: 4 LDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIE 63
+D +D EK +++++ SA+ LS +D+KLPQ+ NILPLL+RGIGVHHSGL+PILKE IE
Sbjct: 396 MDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSGLMPILKETIE 455
Query: 64 ILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123
ILF EGL+K LFATETFS+GLNMPA+TVVFT+ RKFDG R+I+SGEYIQM+GRAGRRG
Sbjct: 456 ILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRG 515
Query: 124 IDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNS 183
D+RG ILMVD M AK ++KG+ D LNS F L+YNM+LN +R E + ++ NS
Sbjct: 516 KDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMVLNLMRVEGMAVSWIINNS 575
Query: 184 FYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPK 243
F+QFQ+ IP+++K+ +E + S E+ ++ +L Q ++ ++ + I PK
Sbjct: 576 FHQFQSYAKIPEIDKKCVQVERKIASFNFPWENEMRTLVDLQDQLEATRQRIIQIQREPK 635
Query: 244 YCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSN 303
Y + FL GR ++ + D WG++ +F+K + P+D N
Sbjct: 636 YIVGFLHAGRLFKVK------------SGDRDFKWGILNQFKK---------EQNPDDRN 674
Query: 304 YTVNILTRCV-VSKDGAGKKT--LKIVPLKESGEPLVVSVP--ISQIIKLSSARLPMPKD 358
+ + + ++ +G T +VP + + + VP I +I +S+ RL +P D
Sbjct: 675 DQIYLCDMMIAINTEGRFDPTNPATLVPGFDLPKRRWIRVPMTIDRITAISAVRLKVPAD 734
Query: 359 LLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEI 417
+ + + + R + +P LDP +M I++ ++L+ R ++LE + H +
Sbjct: 735 IDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQDMEIKTVEMKELIAREKSLEGRLETHSM 794
Query: 418 SKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDV 477
+K ++ K KQ+ ++ ++K + +S +EL RKRVLRRLGY +DD
Sbjct: 795 TKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHLEELNNRKRVLRRLGYLGNDDA 854
Query: 478 VELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELE 537
+ LKG VACE+S+++EL LTE++ G+ + V + +LLSCFV+Q+K A K EL+
Sbjct: 855 LVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAALLSCFVFQDKCA-APKLATELQ 913
Query: 538 LLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVF 597
++L + AR VAKV ECK+++ + +V+SF P +M+ VY W G+ F EI++ T VF
Sbjct: 914 TCLSELHEQARNVAKVSNECKMEVMEDKYVSSFNPGLMDVVYQWVNGATFSEIVKTTDVF 973
Query: 598 EGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650
EGS+IR +RRLEEVL+++I AAK++ ELE KFE+A +KRDIVFAASLYL
Sbjct: 974 EGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIVFAASLYL 1026
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust.
Identities = 261/658 (39%), Positives = 408/658 (62%), Gaps = 25/658 (3%)
Query: 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKE 60
KLDL + + K + IF SA++ LS++D+ L Q + LL RGIG+HHSGLLPILKE
Sbjct: 390 FGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKE 449
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120
++EILFQEGL++ LFATETFSIGLNMPA+TV+FT +KF G+ FRW++SGEY+QMSGRAG
Sbjct: 450 LVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAG 509
Query: 121 RRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLL 180
RRGID +G+ I+++D ++ A+ ++ G AD LNSAFHLSY M+LN +R EE SPE++L
Sbjct: 510 RRGIDTKGLSIVILDQSIDEQAARCLMNGQADVLNSAFHLSYGMILNLMRIEEISPEDIL 569
Query: 181 RNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240
+ SFYQFQ ++P ++++ L+ E S+ I E ++K +++L Q + ++++ ++
Sbjct: 570 KKSFYQFQNMESLPLIKEELMQLKNEETSINIPNETAVKEFHDLKLQLEKYGEEIQKVMT 629
Query: 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPE 300
P CLP+LQ GR + I+ G P WGV++ K E D N + +
Sbjct: 630 HPDNCLPYLQSGRLIQIKL--GGIIFP----------WGVLVNVIK----REFDPNTREQ 673
Query: 301 DSNYTVNILTRCV-VSKDGAGKKTLK---IVPLKESGEPL--VVSVPISQIIKLSSARLP 354
+ + +L + +S + + +VP + + PL +VSV ++ + +SS R+
Sbjct: 674 VAPHETYVLDVLLPISSNSMSNHKVNPSILVPPRPNETPLYEIVSVLLTAVCNISSIRIY 733
Query: 355 MPKDLLPLQTRENMLKSTSEFLARNASGLPLDPEANMGIRSSSYQKLVRRIEALE-SLFD 413
MP++L +++ + +E + LDP +M I SS+ +R++E LE LFD
Sbjct: 734 MPRELNSNESKLRAYRRVNEVIEEFKEIPYLDPLEHMHIESSTLSLSLRKLEILEPKLFD 793
Query: 414 KHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYAT 473
K + K L A+IK I ++ ++ + ELK R+RVLRRLG+ T
Sbjct: 794 S-PYYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQLRELKIRQRVLRRLGFCT 852
Query: 474 SDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDAS-KP 532
++V+++KG+VACEI+S +EL L ELIF G + EE+ + LSCFV+++K + ++
Sbjct: 853 LENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFVYEDKSEVSTLNL 912
Query: 533 REELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIME 592
+E + ++ + + A+R+A V LE K+Q + +++ F+PDIME V W G+ F EI
Sbjct: 913 KEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQFKPDIMEPVSLWINGASFQEICI 972
Query: 593 ITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650
++ ++EGS++R RRL+E+L+QL AA +G EL+ K K+ RDI+F+ASLYL
Sbjct: 973 VSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSVLTEQKLHRDIIFSASLYL 1030
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 214/683 (31%), Positives = 347/683 (50%), Gaps = 58/683 (8%)
Query: 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKE 60
+ LDLT EK I + L D++LPQV ++ LL RG+GVHHSG+LPILKE
Sbjct: 586 LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKE 645
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120
++E+LF GL+K LFATETF++G+NMPA+TVVF ++RK DG FR + GEY+QM+GRAG
Sbjct: 646 IVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAG 705
Query: 121 RRGIDERGICILMVDDKMEPSTAKM--MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPEN 178
RRG+D G IL+ ++ P A + M+ G L S F L+Y M+LN +R + E+
Sbjct: 706 RRGLDPTGTVILLCKGRV-PEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVED 764
Query: 179 LLRNSFYQFQA-------DHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSL 231
+++ SF +F + + A+ +L K+ LEE M + D L YY+ ++
Sbjct: 765 MMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEP--DMTGQLVD-LPEYYSWGEELTET 821
Query: 232 KKDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKV---- 287
+ ++ + L L GR V ++ ++H GV+++
Sbjct: 822 QHMIQRRIMESVNGLKSLSAGRVVVVK------------NQEHHNALGVILQVSSNSTSR 869
Query: 288 ---------KGVYEDDANKKPEDSN--YTVNILTRCVVSKDGAGKKTLKIVPLKESGEPL 336
K + +D ++ P + Y +++ + +G T +V L +P
Sbjct: 870 VFTTLVLCDKPLSQDPQDRGPATAEVPYPDDLVGFKLFLPEGPCDHT--VVKL----QPG 923
Query: 337 VVSVPISQIIKLSSARL---------PMPKDLLPLQTRENMLKSTSEFLARNASGLP-LD 386
++ +++++++ ++ P K PL ++ + +G P LD
Sbjct: 924 DMAAITTKVLRVNGEKILEDFSKRQQPKFKKDPPLAAVTTAVQELLRLAQAHPAGPPTLD 983
Query: 387 PEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQ 446
P ++ ++ S + R LE L + SP + L + ++ +++ + R
Sbjct: 984 PVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPRFPAQYLKLRERMQIQKEMERL-RF 1042
Query: 447 MRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLK 506
+ S L E R VLR LGY V+L G+VAC +SS EL LTEL+F+ L
Sbjct: 1043 LLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVACAMSS-HELLLTELMFDNALS 1101
Query: 507 DVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEGF 566
++ EE+ +LLS V Q + L+ +++ A+R+ +VQ+ C + VE F
Sbjct: 1102 TLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAVAKRIGEVQVACGLNQTVEEF 1161
Query: 567 VNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETE 626
V ++E VY WA+G F E+ ++ EG ++R I+RL E+ + L AA+ +GE
Sbjct: 1162 VGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPV 1221
Query: 627 LEAKFEEAVSKIKRDIVFAASLY 649
L AK E A + ++RDIVFAASLY
Sbjct: 1222 LGAKMETAATLLRRDIVFAASLY 1244
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 158/260 (60%), Gaps = 7/260 (2%)
Query: 4 LDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIE 63
++ + EK I ++ L +D+ LPQ+ LL+RGI VHH GLLPI+KE+IE
Sbjct: 649 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 708
Query: 64 ILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123
ILF +G IK LFATETF++GLN+P +TV+F+++RK DG+ R ++ GE+ QM+GRAGRRG
Sbjct: 709 ILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 768
Query: 124 IDERGICILMV-DDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRN 182
+D G I+M + + +T K + G L S F L+YNM+LN +R E E +++
Sbjct: 769 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKY 828
Query: 183 SFYQFQADHAIPDLEKQAKVLEEERDSMVIEE----EDSLKNYYNLLQQYKSLKKDV-RD 237
SF + + P+ EKQ KVL+EE ++ + ++ ++ + L+ YK ++ ++
Sbjct: 829 SFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQE 888
Query: 238 IVFSPKYCLPFLQPGRFVCI 257
+V SP L L+ GR V
Sbjct: 889 MVKSPS-ILHILKEGRLVAF 907
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 137/257 (53%), Gaps = 22/257 (8%)
Query: 411 LFDKHEISKSPLIEQKLKVLHMKQELTAKIKS--IKRQMR------SSTELAFKDELKAR 462
L D+ I + +K ++ Q + K K+ IK+++ S L+ + + R
Sbjct: 1036 LLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYEKR 1095
Query: 463 KRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVW 522
VL+ + + V LKG+VACEI+S EL LTELI + L + EE+V+LLS FV+
Sbjct: 1096 LAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVY 1155
Query: 523 QEKLQDASKPREELELLFTQLQDTARRVAKV--QLECKVQI-------DVEGFVNSFRPD 573
+ K ++ EE ++ +L +R+ ++ ++ C D F++ R
Sbjct: 1156 EGKTRE-----EEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFA 1210
Query: 574 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEE 633
+M VY WA+G F EIME++P EG+++R I L+E+ +++ A+ IG + L K
Sbjct: 1211 MMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSR 1270
Query: 634 AVSKIKRDIVFAASLYL 650
A IKRDIVFAASLYL
Sbjct: 1271 AQELIKRDIVFAASLYL 1287
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 146/239 (61%), Gaps = 4/239 (1%)
Query: 5 DLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEI 64
DL EK + + A+ L +D+ LPQ+ + +L RG+ VHH GLLPI+KE++EI
Sbjct: 574 DLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREMLSRGLAVHHGGLLPIIKEIVEI 633
Query: 65 LFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124
LFQ GL+K LFATETF++G+NMPAK+VVF+ +K DG FR + GEY Q SGRAGRRG+
Sbjct: 634 LFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGL 693
Query: 125 DERGICILMVDDKMEPSTAKM--MLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRN 182
D G I++ ++ P TA + M+ G + L S F L+YNM+LN +R E E++++
Sbjct: 694 DVTGTVIILSRSEL-PDTASLRHMIMGPSSKLISQFRLTYNMILNLLRVETLRIEDMIKR 752
Query: 183 SFYQFQADHAIPDLEKQAKVLEEERDSMVIEEED-SLKNYYNLLQQYKSLKKDVRDIVF 240
SF + +P E++ K EE+ ++ E D LK + L +S K+ + + F
Sbjct: 753 SFSENVNQTLVPQHEEKIKSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMHF 811
Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 141/260 (54%), Gaps = 12/260 (4%)
Query: 402 VRRIEALESL----FDKHEISKSPLIEQKLKVLHM-----KQELTAKIKSIKRQMRSSTE 452
VR E E+ F ++++S +P+I + H + EL + I ++ + S
Sbjct: 955 VRDFEFCEAFEKRNFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYI-SDQN 1013
Query: 453 LAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEE 512
L + + R +VL+ LGY ++ V LKG+VACEI+S EL LTELI L D EE
Sbjct: 1014 LELLPDYEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCEE 1073
Query: 513 MVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEG--FVNSF 570
++LLS FV+ EK + L+ + A +V ++Q +V EG F +
Sbjct: 1074 TIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQP 1133
Query: 571 RPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAK 630
R +ME Y WA+G F I ++T V EGS++R I RL+EVL++ AA+ +G++ + K
Sbjct: 1134 RFGLMEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTK 1193
Query: 631 FEEAVSKIKRDIVFAASLYL 650
EE + I+R+IVF SLY+
Sbjct: 1194 MEECQNLIRRNIVFCPSLYM 1213
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 117/209 (55%), Gaps = 5/209 (2%)
Query: 2 AKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEV 61
+ L LT ++E+ I + L+D D + L RG+ HH+G+LP +
Sbjct: 295 SPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHT 354
Query: 62 IEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGR 121
+E LF GL+K +FATET ++G+NMPA+TVV + KF+G++ ++ GEY Q++GRAGR
Sbjct: 355 VEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGR 414
Query: 122 RGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQI-RCEEGSPENLL 180
RGID G +++ ++EPS + L S+F SYNM +N + R LL
Sbjct: 415 RGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLL 474
Query: 181 RNSFYQFQADHAIPDL----EKQAKVLEE 205
SF Q+QAD ++ L E+ ++L E
Sbjct: 475 EQSFAQYQADRSVVGLVRGIERGNRILGE 503
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 110/199 (55%), Gaps = 8/199 (4%)
Query: 4 LDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIE 63
L LT ++E+ I + L+D D + L RG+ HH+G+LP + +E
Sbjct: 300 LRLTSEEERAQIAEVIDHRCGDLADADLAVLGYYEWREGLLRGLAAHHAGMLPAFRHAVE 359
Query: 64 ILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123
LF GL+K +FATET ++G+NMPA+TVV + KF+G + ++ GEY Q++GRAGRRG
Sbjct: 360 ELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRRG 419
Query: 124 IDERGICILM---VDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPEN-- 178
ID G +++ +D PS + L S+F SYNM +N + SPE
Sbjct: 420 IDVEGHAVVIWHPSEDTSGPSAVAGLASARTFPLRSSFVPSYNMTINLVHWM--SPERAH 477
Query: 179 -LLRNSFYQFQADHAIPDL 196
LL SF Q+QAD ++ L
Sbjct: 478 ALLEQSFAQYQADRSVVGL 496
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 102
L RGI HH+G LP+ K IE LFQ GL+K +FATET + G+NMPA+T V +++ K G+
Sbjct: 494 LLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGN 553
Query: 103 KFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPS--TAKMMLKGSADSLNSAFHL 160
+ + E QM+GRAGRRGIDE+G +L V E + K++ G L S F
Sbjct: 554 ERIELGPNELYQMAGRAGRRGIDEKGYTVL-VQTAFEGAEECCKLVFAG-VKPLVSQFTA 611
Query: 161 SYNMLLNQI 169
SY M+LN +
Sbjct: 612 SYGMVLNLV 620
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 26/148 (17%)
Query: 482 GKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFV--------WQEKLQDASKPR 533
G+ A I EL L ++ N L D+K ++ + + V W++ +P
Sbjct: 1005 GETAAAIRGENELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDN-NYIYEPS 1063
Query: 534 EELELLFTQLQDTARRVAKVQ------LECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKF 587
+ + + L+D + K+Q + C + + G V AWA G +
Sbjct: 1064 DTVVDMVNFLEDQRSSLIKLQEKHEVMIPCCLDVQFSGMVE-----------AWASGLSW 1112
Query: 588 YEIMEITPVFEGSLIRAIRRLEEVLQQL 615
E+M + EG L R +RR ++L Q+
Sbjct: 1113 KEMMMECAMDEGDLARLLRRTIDLLAQI 1140
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans GN=C28H8.3
PE=3 SV=2
Length = 1714
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 39 ILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRK 98
+L L +RGIG HH+GL + + +E+LF+ G + LF+T T S+G+NMP KTV+F
Sbjct: 1274 LLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF----- 1328
Query: 99 FDGDKFRWISSGEYIQMSGRAGRRGIDERGICILM 133
G ++ Y QMSGRAGRRG D G I M
Sbjct: 1329 --GVDTLQLTPLLYRQMSGRAGRRGFDHSGNVIFM 1361
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L+ RG+ HH+GL L+++IE F+E +IK + AT T + G+N+PA+ VV ++ +F+
Sbjct: 306 LIVRGVAFHHAGLSKGLRDIIEASFRERIIKVITATPTLAAGVNLPARAVVIGDIYRFNR 365
Query: 102 DKFRW---ISSGEYIQMSGRAGRRGIDERGICILMVDDKME 139
+ IS+ EY QMSGRAGR G D G I++V K+E
Sbjct: 366 KIVGFTEMISTMEYRQMSGRAGRPGYDNHGEAIILVRSKVE 406
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 59/94 (62%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L+ GI HH+GL P L++ +E F+ G +K +++T T + G+N+PA+ VV + +++
Sbjct: 303 LIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRVVIDSYYRYEA 362
Query: 102 DKFRWISSGEYIQMSGRAGRRGIDERGICILMVD 135
I EY QM+GRAGR G+DE G I++ +
Sbjct: 363 GFREPIRVAEYKQMAGRAGRPGLDEFGEAIIVAE 396
>sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens
GN=DDX60L PE=2 SV=2
Length = 1706
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 68/125 (54%), Gaps = 10/125 (8%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L +RGIG HHS + KE +EILF +GLI+ + ATET ++G++MP K+VVF +
Sbjct: 1240 LAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSVY-- 1297
Query: 102 DKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLS 161
+ + Y QMSGRAGRRG D G D P K +L S L F LS
Sbjct: 1298 -----LDALNYRQMSGRAGRRGQDLLGNVYFF--DIPLPKI-KRLLASSVPELRGQFPLS 1349
Query: 162 YNMLL 166
++L
Sbjct: 1350 ITLVL 1354
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L+ +G+ HH+GL L+++IE F++ IK + AT T + G+N+PA+TV+ ++ +F+
Sbjct: 303 LISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNR 362
Query: 102 DKFRW---ISSGEYIQMSGRAGRRGIDERGICILMVDDK--------------MEPSTAK 144
+ I EY QMSGRAGR G D+ G I++V DK +EP +K
Sbjct: 363 KIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVRDKEDVDRVFKKYILSDVEPIESK 422
Query: 145 MMLKGSADSLNSAFH--LSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKV 202
+ GS + + LS L++ + E + E+LL S D AI L + + +
Sbjct: 423 L---GSERAFYTFLLGILSAEGSLSEKQLEAFAYESLLAKSVVDVYFDRAIRWLSEHSFI 479
Query: 203 LEE 205
EE
Sbjct: 480 REE 482
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 7/86 (8%)
Query: 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 102
L RGIG+HHSGL ++++E+LF+ G + + AT T S+G+NMP +TVVF GD
Sbjct: 1221 LYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFL------GD 1274
Query: 103 KFRWISSGEYIQMSGRAGRRGIDERG 128
+ +++ + Q +GRAGRRG D G
Sbjct: 1275 SLQ-LNALNFHQAAGRAGRRGFDLLG 1299
>sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60
PE=1 SV=3
Length = 1712
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L +RGIG HHS + K+++EILF++G ++ + AT T ++G+NMP K+VVF +
Sbjct: 1256 LAERGIGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVFAQNSVY-- 1313
Query: 102 DKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLS 161
+ + Y QMSGRAGRRG D G D P K ++K + L F LS
Sbjct: 1314 -----LDALNYRQMSGRAGRRGQDLMGDVYFF--DIPFPKIGK-LIKSNVPELRGHFPLS 1365
Query: 162 YNMLL 166
++L
Sbjct: 1366 ITLVL 1370
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 66/105 (62%), Gaps = 3/105 (2%)
Query: 38 NILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVR 97
++ L+ RG+ HH+GL L+++IE F++ ++K + AT T + G+N+PA+ VV ++
Sbjct: 301 DLYNLVLRGVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVVIGDIY 360
Query: 98 KFDGDKFRW---ISSGEYIQMSGRAGRRGIDERGICILMVDDKME 139
+++ + I +Y QMSGRAGR G DE G +++V +K E
Sbjct: 361 RYNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKRE 405
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFD- 100
L+K G+ HH+GL ++ VIE F+ G+++ L +T T + G+N+PA+ V+ R+++
Sbjct: 305 LIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRVIVNEYRRYEP 364
Query: 101 GDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKME 139
G F I EY QM+GRAGR G+D G I++V K E
Sbjct: 365 GYGFIEIPVMEYKQMAGRAGRPGLDPYGEAIIIVSSKDE 403
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
LL G +HH+G+ + + ++E LF + I+ LF+T T + G+N+PA TV+ + ++
Sbjct: 770 LLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNP 829
Query: 102 DKFRWISSG--EYIQMSGRAGRRGIDERGICILMVD 135
+K RW G + +QM GRAGR D+RG IL+ +
Sbjct: 830 EKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITN 865
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 34 PQVSNILPL---LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKT 90
P S L L L+ GI HH+GL +E+IE F++G I + AT + G+N+P++T
Sbjct: 277 PPTSTCLKLAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLMYGVNLPSRT 336
Query: 91 VVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV---DDKMEPSTAKMML 147
VV + ++ R I +Y QMSGRAGR D+ G L+ D+ M+ + +
Sbjct: 337 VVIRDYTRWTSQGPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIARSHDEAMD--LEEYYI 394
Query: 148 KGSADSLNSAFHLSYNMLLNQIRCE-----EGSPENL---LRNSFYQFQ 188
+G + S + + L QI + G+ E L RN+FY +Q
Sbjct: 395 RGEVERTTSRIIENRDALYRQIIAQVASGLSGTTEELADFFRNTFYGYQ 443
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV 96
+N+ ++ G HH+GL L+E++E F+ G IK + +T T + GLN+PA+ V+ N
Sbjct: 296 TNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIRNY 355
Query: 97 RKFDG-DKFRWISSGEYIQMSGRAGRRGIDERGICILMV 134
R++ D + I EY QM+GRAGR +D G +L+
Sbjct: 356 RRYSSEDGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLVA 394
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
+L RG+ HH+GL + IE F+ IK + AT T + G+N+PA+ V+ ++ ++
Sbjct: 283 ILPRGVAFHHAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARLVIVRDITRWGS 342
Query: 102 DKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMML 147
D ++++ E QM GRAGR G D+ GI ++ V + AK L
Sbjct: 343 DGISYLTNMEIKQMIGRAGRPGYDQYGIGLIYVSSQSSYEAAKDYL 388
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 13/151 (8%)
Query: 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 102
+++GI HH+G+ + +E F G I L +T T ++G+N+PA V+ + ++
Sbjct: 417 MQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWNSS 476
Query: 103 KFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSY 162
+ + S + +QM GRAGR + G ++M D KM+ T + ++ G+ D L S+ HL+
Sbjct: 477 EIQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMK-QTYENLIHGT-DVLESSLHLN- 533
Query: 163 NMLLNQIRCEEG--------SPENLLRNSFY 185
L+ + E + N LRN+F+
Sbjct: 534 --LIEHLAAETSLETVYSIETAVNWLRNTFF 562
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 102
++ G HH+GL L+E++E F+EG +K + +T T + GLN+PA+ V+ + R++ D
Sbjct: 302 VRAGTAFHHAGLTSPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSD 361
Query: 103 K-FRWISSGEYIQMSGRAGRRGIDERGICILMV 134
+ I EY QM+GRAGR +D G +L+
Sbjct: 362 SGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLA 394
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 36 VSNILPLLKR-GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFT 94
VS++L R G HH+GL L+E++E F+EG IK + +T T + GLN+PA+ V+
Sbjct: 294 VSSVLATCVRSGTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLNLPARRVIIR 353
Query: 95 NVRKFDGDK-FRWISSGEYIQMSGRAGRRGIDERGICILMV 134
+ R++ D + I EY QM+GRAGR +D G +L+
Sbjct: 354 SYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLA 394
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
LL G +HH+G+ + + ++E LF + I+ L +T T + G+N+PA TV+ + ++
Sbjct: 777 LLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNP 836
Query: 102 DKFRWI--SSGEYIQMSGRAGRRGIDERGICILMVD 135
+K RW+ S+ + +QM GRAGR D +G IL+ +
Sbjct: 837 EKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITN 872
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 102
L +G+ H GL ++E LF G ++ + G+++ A V+ + + ++G
Sbjct: 1612 LAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWGMSISAHLVIIMDTQFYNGK 1671
Query: 103 KFRW--ISSGEYIQMSGRAGRRGIDERGICILM 133
+ + +QM GRA R D C+LM
Sbjct: 1672 NHSYEDYPITDVLQMIGRANRPNEDADAKCVLM 1704
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 102
L GIG+HH+GL + ++E LF E I+ L +T T + G+N+PA V+ FDG
Sbjct: 1611 LSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVIIKGTEYFDGK 1670
Query: 103 KFRWISS--GEYIQMSGRAGRRGIDERGICILMVDDK---------MEPSTAKMMLKGSA 151
R++ + +QM GRAGR D+ G ++MV + +P + LK
Sbjct: 1671 TKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYKKFLYDPFPVESHLK--- 1727
Query: 152 DSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFY 185
D L+ HL+ ++ I+ ++G+ N L N+F+
Sbjct: 1728 DFLHD--HLNAEIVSGTIQSKQGAI-NYLVNTFF 1758
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 39 ILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRK 98
I L + GI VHH+GLL + V+E F G IK L T T + G+N+PA TV+ +
Sbjct: 773 IRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQV 832
Query: 99 FDGDKFRWISSG--EYIQMSGRAGRRGIDERGICILMVD-DKME 139
++ ++ G + +Q+ GRAGR D G L+ DK++
Sbjct: 833 YNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLD 876
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
+L G+ HH+GL + IE F+ +K + AT T + G+N+PA+ V+ +V ++
Sbjct: 283 MLPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTRYGD 342
Query: 102 DKFRWISSGEYIQMSGRAGRRGIDERGICIL-------------MVDDKMEPSTAKMMLK 148
++S+ E QM GRAGR G D+ GI I+ + ++ EP + + K
Sbjct: 343 LGITYLSNMEVKQMIGRAGRPGYDQYGIGIIYAASANSYQVVKEYISEEPEPVDSYIG-K 401
Query: 149 GSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQ-ADHAIPD-LEKQAKVLEEE 206
N+ ++ + +Q+ EE R++FY Q + IP+ + + K L+E
Sbjct: 402 PEKVRFNTLAAIAMGLATSQVEMEE-----FYRSTFYYAQNGEDEIPNRINESIKFLKE- 455
Query: 207 RDSMVIEEEDSLK 219
+ I+E+DSL+
Sbjct: 456 --NGFIKEKDSLR 466
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 14/144 (9%)
Query: 1 MAKLDL-----TEDDEKVNIETIFWSAMDMLS-DDDKKLPQVSNILPLLKRGIGVHHSGL 54
+ LDL TEDD K W MD +D + SN+ L GIG+HH+GL
Sbjct: 1579 LTSLDLIAFLATEDDPKQ------WLKMDEREMNDIIGTVRDSNLKLTLAFGIGMHHAGL 1632
Query: 55 LPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISS--GEY 112
++ +E LF I+ L AT T + G+N PA V+ +DG R++ +
Sbjct: 1633 HERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDV 1692
Query: 113 IQMSGRAGRRGIDERGICILMVDD 136
+QM GRAGR D++G +++V D
Sbjct: 1693 LQMMGRAGRPQFDDQGKAVILVHD 1716
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L G +HH+G+L + ++E LF G IK L T T + G+N+PA VV + +
Sbjct: 783 LFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAA 842
Query: 102 DKFRWISSG--EYIQMSGRAGRRGIDERGICILM-VDDKM---------EPSTAKMMLKG 149
+ ++ G + +Q+ GRAGR D+ G I++ DK+ + L+
Sbjct: 843 KRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLES 902
Query: 150 SADSLNSAFHLS 161
AD+LN+ L
Sbjct: 903 LADNLNAEIALG 914
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 46 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFR 105
G+ HH+GL +++IE F++GLI+ L AT T S G+N+PA+ V+ F G
Sbjct: 412 GVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVII-RTPIFGGRPLD 470
Query: 106 WISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFH 159
++ Y QM GRAGR+G+D G IL+ + E S +L+GS + S
Sbjct: 471 ILT---YKQMVGRAGRKGVDTVGESILICKNS-EKSKGIALLQGSLKPVRSCLQ 520
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L++ GIG HH+GL + + E LF +GL++ L T T + G+N+PA TV+ +
Sbjct: 796 LIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSP 855
Query: 102 DKFRW--ISSGEYIQMSGRAGRRGIDERGICILMVD 135
+K W +S + +QM GRAGR D G I++ D
Sbjct: 856 EKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITD 891
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
LL G +HH+G+ + + ++E LF + I+ L +T T + G+N+PA TV+ + +
Sbjct: 777 LLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSP 836
Query: 102 DKFRWISSG--EYIQMSGRAGRRGIDERGICILMV 134
+K RW G + +QM GRAGR D +G IL+
Sbjct: 837 EKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 871
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 102
L G+G H GL P+ + ++E LF G I+ + A+ + G+N+ A V+ + + ++G
Sbjct: 1613 LLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGK 1672
Query: 103 KFRWISSGEY--IQMSGRAGRRGIDERGICILM 133
++ Y +QM G A R D+ G C++M
Sbjct: 1673 IHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1705
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV 96
SN+ L GIG+HH+GL ++ +E LF I+ L AT T + G+N PA V+
Sbjct: 1606 SNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGT 1665
Query: 97 RKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDD 136
+DG R++ + +QM GRAGR D++G +++V D
Sbjct: 1666 EYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1707
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L G +HH+G+L + ++E LF G IK L T T + G+N+PA V+ + +
Sbjct: 774 LFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAA 833
Query: 102 DKFRWISSG--EYIQMSGRAGRRGIDERGICILM-VDDKM---------EPSTAKMMLKG 149
+ ++ G + +Q+ GRAGR D+ G I++ DK+ + L+
Sbjct: 834 KRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLES 893
Query: 150 SADSLNSAFHLS 161
AD+LN+ L
Sbjct: 894 LADNLNAEIALG 905
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 19/138 (13%)
Query: 7 TEDDEKVNIETIFWSAMDMLSDDDKKLPQV------SNILPLLKRGIGVHHSGLLPILKE 60
TEDD K L D++++ + SN+ L GIG+HH+GL ++
Sbjct: 1143 TEDDPK-----------QWLHQDEREMTDIIATIRESNLKLTLAFGIGMHHAGLHERDRK 1191
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISS--GEYIQMSGR 118
+E LF I+ L AT T + G+N PA V+ +DG R++ + +QM GR
Sbjct: 1192 TVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGR 1251
Query: 119 AGRRGIDERGICILMVDD 136
AGR D++G +++V D
Sbjct: 1252 AGRPQFDDQGKAVILVHD 1269
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 46 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFR 105
G G+HH+G+L + ++E +F G +K L T T + G+N+PA V+ +D +
Sbjct: 376 GFGIHHAGMLRQDRSLMESMFSRGYLKVLVCTATLAWGVNLPAHAVIIKGTNIYDAKRGT 435
Query: 106 WISSG--EYIQMSGRAGRRGIDERG-ICILMVDDKM 138
+ G + +Q+ GRAGR D+ G I+ DK+
Sbjct: 436 LVDLGILDVMQIFGRAGRPQFDKYGEGTIITTHDKL 471
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV 96
SN+ L GIG+HH+GL ++ +E LF ++ L AT T + G+N PA V+
Sbjct: 1606 SNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGT 1665
Query: 97 RKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDD 136
+DG R++ + +QM GRAGR D++G +++V D
Sbjct: 1666 EYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1707
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L G +HH+G+L + ++E LF G IK L T T + G+N+PA V+ + +
Sbjct: 775 LFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAA 834
Query: 102 DKFRWISSG--EYIQMSGRAGRRGIDERGICILM-VDDKM---------EPSTAKMMLKG 149
+ ++ G + +Q+ GRAGR D+ G I++ DK+ + L+
Sbjct: 835 KRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLES 894
Query: 150 SADSLNSAFHLS 161
AD+LN+ L
Sbjct: 895 LADNLNAEIALG 906
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L+ RG+ H++GL ++ ++E F+ GL+K + +T T + G+N+PA+ VV + +FD
Sbjct: 299 LVARGVAFHNAGLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPARRVVVADYERFDP 358
Query: 102 DKFR-WISSGEYIQMSGRAGRRGIDERGICILMVDDKME 139
R I EY QM+GRAGR G+D G +L+ K E
Sbjct: 359 ALGREEIPVLEYRQMAGRAGRPGLDPYGEAVLVARSKGE 397
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 36 VSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTN 95
V + + +G HH+GL + ++E F++ L+KC+ +T T + GLN+PA+ V+ +
Sbjct: 288 VKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGLNLPARRVIIRD 347
Query: 96 VRKFD-GDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKME-PSTAKMMLKGSADS 153
+F G+ + I EY QM+GRAGR +D G +L+ + + P ++ ++ A+
Sbjct: 348 YLRFSAGEGMQPIPVSEYRQMAGRAGRPRLDPYGEAVLIAKEAEQVPELFEVYIEAEAED 407
Query: 154 LNS 156
++S
Sbjct: 408 VHS 410
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV 96
SN+ L GIG+HH+GL ++ +E LF ++ L AT T + G+N PA V+
Sbjct: 1606 SNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGT 1665
Query: 97 RKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDD 136
+DG R++ + +QM GRAGR D++G +++V D
Sbjct: 1666 EYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1707
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 35 QVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFT 94
QV + P G +HH+G+L + ++E LF G IK L T T + G+N+PA V+
Sbjct: 770 QVRELFP---DGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIK 826
Query: 95 NVRKFDGDKFRWISSG--EYIQMSGRAGRRGIDERGICILM-VDDKM 138
+ + + ++ G + +Q+ GRAGR D+ G I++ DK+
Sbjct: 827 GTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKL 873
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV 96
SN+ L GIG+HH+GL ++ +E LF ++ L AT T + G+N PA V+
Sbjct: 1607 SNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGT 1666
Query: 97 RKFDGDKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDD 136
+DG R++ + +QM GRAGR D++G +++V D
Sbjct: 1667 EYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1708
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
L G +HH+G+L + ++E LF G IK L T T + G+N+PA VV + +
Sbjct: 775 LFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAA 834
Query: 102 DKFRWISSG--EYIQMSGRAGRRGIDERGICILM-VDDKM---------EPSTAKMMLKG 149
+ ++ G + +Q+ GRAGR D+ G I++ DK+ + L+
Sbjct: 835 KRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLES 894
Query: 150 SADSLNSAFHLS 161
AD+LN+ L
Sbjct: 895 LADNLNAEIALG 906
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 102
+++G+ HH+GL ++++E F++ LIK + +T T + GLN+PA+ V+ + R+FD +
Sbjct: 302 IRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVIIRSYRRFDSN 361
Query: 103 -KFRWISSGEYIQMSGRAGRRGIDERGICILM 133
+ I EY QM+GRAGR +D G +L+
Sbjct: 362 FGMQPIPVLEYKQMAGRAGRPHLDPYGESVLL 393
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG- 101
L+ GIG+HH+GL+ + + LFQ+ I+ L AT T + G+N+PA V+ + FD
Sbjct: 1427 LQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAK 1486
Query: 102 -DKFRWISSGEYIQMSGRAGRRGIDERGICIL 132
+ +R + + +QM GRAGR D G I+
Sbjct: 1487 IEGYRDMDLTDILQMMGRAGRPAYDTTGTAIV 1518
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
+ + G G+HH+G+ + + E +F++G IK L T T + G+N+PA V+ + +D
Sbjct: 590 IFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDS 649
Query: 102 DKFRWISSG 110
K +I G
Sbjct: 650 KKGGFIDLG 658
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV 96
S + +LK G HH+G+ ++V+E F G + LF T T ++G+N+PA VV +
Sbjct: 573 SKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKST 632
Query: 97 RKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNS 156
+ G F S + +QM GRAGR D ++M ++ + + D++ S
Sbjct: 633 MHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMT--RLSTRDKYIQMLACRDTVES 690
Query: 157 AFH 159
+ H
Sbjct: 691 SLH 693
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV 96
S + +L+ G+G HH+G+ ++VIE F G + LF T T ++G+N+PA V+ +
Sbjct: 442 SKLRDVLQYGVGYHHAGVDISDRKVIENSFLIGDLPVLFTTSTLAMGVNLPAHLVIVKST 501
Query: 97 RKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNS 156
+ F+ S + +QM GRAGR D ++M + M+ AD++ S
Sbjct: 502 MHYVSGMFQEYSETDILQMIGRAGRPQFDSTATAVIMTRLSTKEKYVHML--DGADTIES 559
Query: 157 AFH 159
+ H
Sbjct: 560 SLH 562
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 31 KKLPQVSN--ILPLLKR----GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGL 84
K L + N + P+LKR GI HHSGL ++++E + G++ L T T + G+
Sbjct: 577 KSLRNIGNGKVCPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGV 636
Query: 85 NMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137
N+PA+ V+ + + F + +Y QM GRAGR GID G IL++ +K
Sbjct: 637 NLPARRVILR--APYVANTF--LKRNQYKQMVGRAGRAGIDTAGESILLLQEK 685
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 38 NILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVR 97
N+ LL G +HH+G+ ++ E LF +G I+ L +T T + G+N+PA TV+ +
Sbjct: 812 NLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQ 871
Query: 98 KFDGDKFRW--ISSGEYIQMSGRAGRRGIDERGICILMV 134
+ +K W +S + +QM GRAGR D G I++
Sbjct: 872 VYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIIT 910
Score = 39.3 bits (90), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 59 KEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISS--GEYIQMS 116
+ +++ L++ GLIK L A+ L + V+ + +DG + R+I E +QM
Sbjct: 1664 QNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQML 1723
Query: 117 GRAGRRGIDERGICILMV 134
G G E ILM
Sbjct: 1724 GFTASIGSSELSQVILMT 1741
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 101
LL GIG+HH+GL + ++E LF + I+ L +T T + G+N+PA TV+ + ++
Sbjct: 847 LLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVIIKGTQIYNP 906
Query: 102 DKFRW--ISSGEYIQMSGRAGRRGIDERGICILMV 134
+K W +S + QM GRAGR D+ G I++
Sbjct: 907 EK-GWCELSPLDVTQMLGRAGRPPFDKEGEGIIIT 940
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 21/185 (11%)
Query: 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGL-NMPAKTVVFTNVRKFDG 101
L+ G+ +H GL + V+EILF+ G I+ L AT + + L N+ A+ VV + + G
Sbjct: 1686 LQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQLVVIMGTQLYQG 1745
Query: 102 DKFRWISS--GEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFH 159
R+I + +QM GRAG++ E G I AK++L A
Sbjct: 1746 KDIRYIDYPINDILQMIGRAGKQ---EGGGVI-------SNKVAKVLLLCHAPKKE---- 1791
Query: 160 LSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLK 219
Y M LN+ E ++ L + QF ++ + K+ L+ + + +
Sbjct: 1792 -YYKMFLNEPLPVESHLDHCLHD---QFNSEIVTKTITKKQDALDYLTWTFLYRRLNQNP 1847
Query: 220 NYYNL 224
NYYNL
Sbjct: 1848 NYYNL 1852
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 10/106 (9%)
Query: 37 SNILPLLKR----GIGVHHSGLLPILKEVIEILFQEGLIKCLF-ATETFSIGLNMPAKTV 91
N+ P+LKR G+ HHSGL ++++E + G++ CLF T T + G+N+PA+ V
Sbjct: 626 GNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVL-CLFTCTSTLAAGVNLPARRV 684
Query: 92 VFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137
+ + +F + +Y QM GRAGR GID G IL++ +K
Sbjct: 685 ILR--APYVAKEF--LKRNQYKQMIGRAGRAGIDTIGESILILQEK 726
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,847,973
Number of Sequences: 539616
Number of extensions: 9796178
Number of successful extensions: 32349
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 32094
Number of HSP's gapped (non-prelim): 333
length of query: 650
length of database: 191,569,459
effective HSP length: 124
effective length of query: 526
effective length of database: 124,657,075
effective search space: 65569621450
effective search space used: 65569621450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)