Query 006319
Match_columns 650
No_of_seqs 293 out of 2242
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 21:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0948 Nuclear exosomal RNA h 100.0 4E-157 9E-162 1276.0 53.1 637 1-650 403-1041(1041)
2 KOG0947 Cytoplasmic exosomal R 100.0 5E-116 1E-120 973.8 48.8 624 1-650 587-1248(1248)
3 COG4581 Superfamily II RNA hel 100.0 4.4E-90 9.6E-95 796.1 45.8 623 1-650 399-1041(1041)
4 PF08148 DSHCT: DSHCT (NUC185) 100.0 2.9E-53 6.3E-58 414.5 14.1 177 472-650 1-180 (180)
5 PF13234 rRNA_proc-arch: rRNA- 100.0 1.4E-40 3.1E-45 345.4 21.2 261 177-449 1-267 (268)
6 PRK02362 ski2-like helicase; P 99.9 5.5E-23 1.2E-27 241.6 21.2 189 36-225 295-502 (737)
7 PRK00254 ski2-like helicase; P 99.9 2.2E-22 4.7E-27 236.1 21.0 189 36-225 287-493 (720)
8 KOG0952 DNA/RNA helicase MER3/ 99.9 7.4E-24 1.6E-28 241.0 7.8 174 9-184 359-541 (1230)
9 KOG0951 RNA helicase BRR2, DEA 99.9 1.3E-23 2.7E-28 241.4 8.5 220 37-258 600-853 (1674)
10 PRK01172 ski2-like helicase; P 99.9 4.5E-22 9.7E-27 232.0 19.2 153 37-189 278-437 (674)
11 COG1204 Superfamily II helicas 99.9 8.2E-23 1.8E-27 237.4 10.4 154 37-190 307-469 (766)
12 KOG0949 Predicted helicase, DE 99.8 4.4E-20 9.5E-25 208.5 11.4 123 37-169 955-1077(1330)
13 KOG0950 DNA polymerase theta/e 99.7 3.1E-17 6.7E-22 186.9 8.7 116 39-159 517-632 (1008)
14 COG1202 Superfamily II helicas 99.6 6.6E-16 1.4E-20 167.4 7.1 115 37-155 454-580 (830)
15 TIGR00614 recQ_fam ATP-depende 99.5 1.6E-13 3.5E-18 153.9 11.1 94 44-148 250-343 (470)
16 PLN03137 ATP-dependent DNA hel 99.4 2.1E-13 4.6E-18 161.1 10.9 103 35-148 695-797 (1195)
17 PTZ00424 helicase 45; Provisio 99.4 2.5E-13 5.4E-18 148.8 9.4 85 43-137 290-374 (401)
18 PF00271 Helicase_C: Helicase 99.4 6E-13 1.3E-17 111.7 9.0 76 40-123 3-78 (78)
19 PLN00206 DEAD-box ATP-dependen 99.4 5.2E-13 1.1E-17 151.4 11.1 84 44-137 392-475 (518)
20 PRK09751 putative ATP-dependen 99.4 7.3E-13 1.6E-17 162.2 13.1 125 47-180 304-435 (1490)
21 PRK11057 ATP-dependent DNA hel 99.4 6.5E-13 1.4E-17 153.3 10.8 93 45-148 261-353 (607)
22 PRK13767 ATP-dependent helicas 99.4 1.3E-12 2.8E-17 156.3 13.6 104 45-156 315-421 (876)
23 TIGR03817 DECH_helic helicase/ 99.4 1.3E-12 2.7E-17 153.6 12.1 84 44-137 303-386 (742)
24 PRK04837 ATP-dependent RNA hel 99.4 1.3E-12 2.8E-17 144.6 9.2 84 44-137 279-362 (423)
25 TIGR01389 recQ ATP-dependent D 99.4 2E-12 4.4E-17 149.0 10.9 92 45-147 249-340 (591)
26 PRK10590 ATP-dependent RNA hel 99.4 2.5E-12 5.3E-17 143.8 10.7 83 45-137 270-352 (456)
27 PRK11776 ATP-dependent RNA hel 99.3 2.8E-12 6E-17 143.5 10.6 84 44-137 266-349 (460)
28 KOG0953 Mitochondrial RNA heli 99.3 7E-12 1.5E-16 136.3 12.2 123 44-168 381-507 (700)
29 PRK11192 ATP-dependent RNA hel 99.3 4.9E-12 1.1E-16 140.4 10.7 90 37-136 259-351 (434)
30 COG0514 RecQ Superfamily II DN 99.3 6.9E-12 1.5E-16 140.8 11.0 106 32-148 242-347 (590)
31 PRK01297 ATP-dependent RNA hel 99.3 9E-12 2E-16 140.0 11.2 84 44-137 359-442 (475)
32 KOG0328 Predicted ATP-dependen 99.3 1.2E-11 2.5E-16 125.0 10.0 98 30-137 276-373 (400)
33 PRK04537 ATP-dependent RNA hel 99.3 1E-11 2.2E-16 142.3 10.9 84 44-137 281-364 (572)
34 smart00490 HELICc helicase sup 99.3 1.5E-11 3.3E-16 102.6 9.2 73 42-123 9-82 (82)
35 COG0513 SrmB Superfamily II DN 99.3 8.2E-12 1.8E-16 141.3 9.9 93 43-145 296-388 (513)
36 PTZ00110 helicase; Provisional 99.3 1.2E-11 2.6E-16 141.1 11.2 83 45-137 402-484 (545)
37 TIGR00643 recG ATP-dependent D 99.3 1.2E-11 2.7E-16 143.3 10.6 85 44-137 482-566 (630)
38 KOG0326 ATP-dependent RNA heli 99.3 9E-12 1.9E-16 127.6 7.2 109 43-159 345-453 (459)
39 PRK10917 ATP-dependent DNA hel 99.2 2.5E-11 5.3E-16 141.9 11.9 84 45-137 506-589 (681)
40 KOG0332 ATP-dependent RNA heli 99.2 3.6E-11 7.8E-16 125.5 10.8 97 42-144 352-450 (477)
41 PRK11634 ATP-dependent RNA hel 99.2 4.2E-11 9.1E-16 138.4 11.5 83 45-137 270-352 (629)
42 cd00079 HELICc Helicase superf 99.2 9.3E-11 2E-15 106.9 9.6 86 37-133 42-131 (131)
43 KOG0331 ATP-dependent RNA heli 99.2 6.3E-11 1.4E-15 131.0 9.4 83 45-137 366-448 (519)
44 KOG0333 U5 snRNP-like RNA heli 99.1 1.2E-10 2.6E-15 126.1 9.6 96 32-137 529-624 (673)
45 KOG0330 ATP-dependent RNA heli 99.1 2E-10 4.3E-15 120.7 9.4 95 41-146 321-415 (476)
46 TIGR00580 mfd transcription-re 99.1 3.7E-10 8.1E-15 134.8 12.0 83 45-137 687-770 (926)
47 PRK10689 transcription-repair 99.1 4E-10 8.8E-15 137.2 11.7 84 44-137 835-919 (1147)
48 KOG0336 ATP-dependent RNA heli 99.0 5.8E-10 1.3E-14 117.6 9.3 116 6-132 445-569 (629)
49 KOG0340 ATP-dependent RNA heli 99.0 7.6E-10 1.6E-14 115.2 8.9 93 34-136 268-360 (442)
50 KOG0342 ATP-dependent RNA heli 99.0 6E-10 1.3E-14 120.2 7.9 92 36-137 346-437 (543)
51 KOG0344 ATP-dependent RNA heli 99.0 2.1E-09 4.4E-14 118.5 11.7 92 36-137 400-495 (593)
52 KOG0345 ATP-dependent RNA heli 99.0 2.4E-09 5.1E-14 115.0 11.5 94 45-150 282-375 (567)
53 TIGR01587 cas3_core CRISPR-ass 99.0 1.1E-09 2.3E-14 118.5 9.1 81 46-137 250-336 (358)
54 KOG0338 ATP-dependent RNA heli 99.0 1.3E-09 2.7E-14 117.9 8.4 106 33-149 439-544 (691)
55 KOG0348 ATP-dependent RNA heli 99.0 1.2E-09 2.6E-14 118.6 8.3 91 46-148 473-563 (708)
56 KOG0343 RNA Helicase [RNA proc 99.0 3.3E-09 7.1E-14 115.7 11.5 101 37-147 330-432 (758)
57 COG1200 RecG RecG-like helicas 98.9 3.4E-09 7.4E-14 119.4 11.1 91 38-138 500-592 (677)
58 KOG0951 RNA helicase BRR2, DEA 98.9 2E-09 4.4E-14 125.9 9.1 113 37-159 1400-1514(1674)
59 COG1201 Lhr Lhr-like helicases 98.9 3.1E-09 6.7E-14 123.7 10.1 108 38-154 272-383 (814)
60 KOG0351 ATP-dependent DNA heli 98.9 4.6E-09 1E-13 124.5 8.8 110 30-150 495-604 (941)
61 KOG0347 RNA helicase [RNA proc 98.9 4.8E-09 1E-13 114.4 7.9 144 48-206 491-638 (731)
62 KOG0335 ATP-dependent RNA heli 98.8 1.1E-08 2.4E-13 111.9 9.8 92 36-137 353-444 (482)
63 KOG4284 DEAD box protein [Tran 98.8 1.5E-08 3.3E-13 112.1 9.4 85 45-139 297-381 (980)
64 KOG0350 DEAD-box ATP-dependent 98.8 1.2E-08 2.6E-13 110.4 7.8 92 45-147 458-549 (620)
65 PRK04914 ATP-dependent helicas 98.8 1.9E-07 4.2E-12 111.7 18.2 105 37-149 507-617 (956)
66 TIGR00631 uvrb excinuclease AB 98.8 3.5E-08 7.5E-13 114.5 11.5 94 37-137 456-553 (655)
67 KOG0341 DEAD-box protein abstr 98.7 1.9E-08 4.1E-13 105.7 7.9 85 43-137 442-528 (610)
68 PRK05298 excinuclease ABC subu 98.7 3.8E-08 8.1E-13 114.7 10.5 94 37-137 460-557 (652)
69 COG4098 comFA Superfamily II D 98.7 3.5E-08 7.5E-13 102.7 9.0 96 34-137 316-416 (441)
70 KOG0352 ATP-dependent DNA heli 98.7 2.8E-08 6E-13 105.7 6.8 96 44-150 277-374 (641)
71 PHA02653 RNA helicase NPH-II; 98.6 6.6E-08 1.4E-12 112.2 9.2 98 36-137 408-514 (675)
72 TIGR01970 DEAH_box_HrpB ATP-de 98.6 4.7E-08 1E-12 115.9 7.9 88 47-137 239-336 (819)
73 KOG0327 Translation initiation 98.6 8.3E-08 1.8E-12 101.4 8.4 84 44-137 287-370 (397)
74 PRK11664 ATP-dependent RNA hel 98.6 8.1E-08 1.8E-12 114.0 8.2 99 36-137 225-339 (812)
75 KOG0339 ATP-dependent RNA heli 98.6 1.8E-07 4E-12 101.4 10.1 116 12-137 452-575 (731)
76 TIGR02621 cas3_GSU0051 CRISPR- 98.6 1.3E-07 2.9E-12 110.9 9.7 86 37-133 286-388 (844)
77 PHA02558 uvsW UvsW helicase; P 98.5 2E-07 4.2E-12 105.7 9.1 82 36-125 357-442 (501)
78 COG1197 Mfd Transcription-repa 98.5 3.2E-07 6.8E-12 109.1 10.7 91 46-146 831-924 (1139)
79 TIGR00603 rad25 DNA repair hel 98.4 7.9E-07 1.7E-11 103.4 11.1 93 35-137 508-607 (732)
80 PRK09200 preprotein translocas 98.4 5.3E-07 1.2E-11 105.7 9.8 82 44-137 452-541 (790)
81 PRK12898 secA preprotein trans 98.4 6.9E-07 1.5E-11 102.7 9.4 82 44-137 497-586 (656)
82 COG1111 MPH1 ERCC4-like helica 98.4 6E-07 1.3E-11 98.1 8.4 77 50-137 405-481 (542)
83 PRK13766 Hef nuclease; Provisi 98.4 1.1E-06 2.3E-11 105.0 11.3 74 53-137 406-479 (773)
84 TIGR03714 secA2 accessory Sec 98.3 1.5E-06 3.1E-11 101.3 8.8 80 45-137 449-537 (762)
85 KOG0334 RNA helicase [RNA proc 98.3 1.7E-06 3.7E-11 101.3 8.7 87 40-136 631-719 (997)
86 PRK11131 ATP-dependent RNA hel 98.3 1.1E-06 2.5E-11 107.0 7.4 86 47-137 316-411 (1294)
87 KOG0353 ATP-dependent DNA heli 98.3 7.4E-07 1.6E-11 93.5 4.7 96 31-136 328-466 (695)
88 KOG0346 RNA helicase [RNA proc 98.2 5.5E-06 1.2E-10 89.0 10.0 95 45-149 291-424 (569)
89 TIGR03158 cas3_cyano CRISPR-as 98.2 2.7E-06 5.7E-11 92.5 7.2 68 36-120 285-357 (357)
90 TIGR00595 priA primosomal prot 98.2 7.1E-06 1.5E-10 93.0 10.1 91 45-137 285-381 (505)
91 TIGR01967 DEAH_box_HrpA ATP-de 98.2 3.8E-06 8.3E-11 102.8 8.4 85 47-137 309-404 (1283)
92 COG1205 Distinct helicase fami 98.2 2.5E-06 5.4E-11 101.8 6.6 82 46-137 340-422 (851)
93 TIGR00963 secA preprotein tran 98.1 1.5E-05 3.3E-10 92.5 11.2 118 6-137 384-517 (745)
94 PRK05580 primosome assembly pr 98.1 1.2E-05 2.7E-10 94.2 10.5 91 45-137 453-549 (679)
95 PRK12906 secA preprotein trans 98.0 1E-05 2.2E-10 94.7 7.1 118 6-137 419-553 (796)
96 KOG0354 DEAD-box like helicase 97.9 2.3E-05 5E-10 90.2 8.2 75 51-137 455-529 (746)
97 KOG0349 Putative DEAD-box RNA 97.9 2E-05 4.2E-10 84.4 6.8 82 46-137 534-615 (725)
98 PRK09694 helicase Cas3; Provis 97.9 3.9E-05 8.5E-10 91.6 10.1 68 46-124 589-664 (878)
99 PRK12900 secA preprotein trans 97.8 0.00034 7.4E-09 83.0 15.4 91 36-137 611-711 (1025)
100 KOG4150 Predicted ATP-dependen 97.8 3.7E-05 7.9E-10 84.7 6.9 78 46-132 559-637 (1034)
101 KOG0329 ATP-dependent RNA heli 97.7 2.4E-05 5.2E-10 78.8 2.5 59 74-142 302-360 (387)
102 PRK09401 reverse gyrase; Revie 97.6 0.00015 3.2E-09 89.6 8.0 58 36-98 344-410 (1176)
103 KOG0337 ATP-dependent RNA heli 97.5 0.0001 2.2E-09 79.1 4.2 92 35-137 276-368 (529)
104 PRK14701 reverse gyrase; Provi 97.3 0.00031 6.7E-09 88.9 6.6 87 37-128 347-449 (1638)
105 PLN03142 Probable chromatin-re 97.2 0.0015 3.1E-08 79.4 10.6 85 45-137 512-599 (1033)
106 COG1061 SSL2 DNA or RNA helica 97.2 0.0016 3.4E-08 72.9 10.2 79 36-122 296-376 (442)
107 COG0556 UvrB Helicase subunit 97.1 0.0015 3.2E-08 72.4 8.7 118 13-137 430-557 (663)
108 COG1203 CRISPR-associated heli 97.1 0.00067 1.4E-08 80.6 6.6 81 46-137 466-550 (733)
109 TIGR01054 rgy reverse gyrase. 97.1 0.00079 1.7E-08 83.3 7.4 57 36-96 342-407 (1171)
110 KOG0922 DEAH-box RNA helicase 97.1 0.00082 1.8E-08 76.2 6.6 116 6-137 265-390 (674)
111 KOG0923 mRNA splicing factor A 96.9 0.0083 1.8E-07 68.0 11.6 117 6-137 480-606 (902)
112 PRK13104 secA preprotein trans 96.6 0.0046 1E-07 73.5 7.5 79 5-87 422-509 (896)
113 PRK11448 hsdR type I restricti 96.6 0.0048 1E-07 76.1 7.9 67 47-124 734-802 (1123)
114 PRK13107 preprotein translocas 96.5 0.0048 1E-07 73.2 6.9 41 46-88 475-515 (908)
115 PRK12904 preprotein translocas 96.3 0.0098 2.1E-07 70.5 8.4 52 36-89 443-497 (830)
116 COG1643 HrpA HrpA-like helicas 96.2 0.0045 9.7E-08 73.6 4.5 87 47-136 290-386 (845)
117 KOG0924 mRNA splicing factor A 96.0 0.017 3.7E-07 65.7 7.6 97 47-149 600-706 (1042)
118 COG1198 PriA Primosomal protei 95.7 0.027 5.9E-07 66.1 7.9 85 59-147 523-612 (730)
119 TIGR01407 dinG_rel DnaQ family 95.3 0.046 9.9E-07 66.3 8.5 100 46-148 702-826 (850)
120 smart00492 HELICc3 helicase su 95.2 0.061 1.3E-06 50.7 7.4 88 45-133 22-135 (141)
121 KOG0920 ATP-dependent RNA heli 94.5 0.032 6.9E-07 66.6 4.2 88 47-137 447-544 (924)
122 smart00491 HELICc2 helicase su 92.7 0.25 5.5E-06 46.6 6.0 85 48-133 22-136 (142)
123 KOG0926 DEAH-box RNA helicase 92.2 0.084 1.8E-06 61.4 2.4 88 47-137 607-704 (1172)
124 PRK08074 bifunctional ATP-depe 91.8 0.64 1.4E-05 57.0 9.6 101 47-149 781-906 (928)
125 PF13307 Helicase_C_2: Helicas 91.4 0.32 7E-06 47.0 5.3 88 46-137 37-150 (167)
126 KOG0390 DNA repair protein, SN 90.9 0.97 2.1E-05 53.5 9.4 103 33-144 608-715 (776)
127 TIGR02562 cas3_yersinia CRISPR 90.8 0.39 8.5E-06 58.3 6.1 70 47-127 789-884 (1110)
128 PRK11747 dinG ATP-dependent DN 89.1 4 8.7E-05 48.6 12.8 90 58-149 569-687 (697)
129 COG1199 DinG Rad3-related DNA 89.1 2.2 4.7E-05 50.3 10.6 124 10-137 462-617 (654)
130 PRK07246 bifunctional ATP-depe 88.3 1.8 3.9E-05 52.4 9.3 91 59-151 683-798 (820)
131 TIGR00348 hsdR type I site-spe 87.4 1.3 2.8E-05 52.4 7.2 68 60-136 580-650 (667)
132 KOG0384 Chromodomain-helicase 86.1 1.9 4E-05 52.9 7.5 110 19-137 688-811 (1373)
133 COG1110 Reverse gyrase [DNA re 85.8 1.6 3.4E-05 52.7 6.6 57 36-97 351-416 (1187)
134 KOG0392 SNF2 family DNA-depend 85.7 1.5 3.2E-05 53.7 6.4 80 49-137 1372-1454(1549)
135 COG4889 Predicted helicase [Ge 85.4 0.93 2E-05 53.6 4.4 79 46-133 499-584 (1518)
136 PF04408 HA2: Helicase associa 85.4 0.8 1.7E-05 40.5 3.2 56 463-519 3-59 (102)
137 KOG1000 Chromatin remodeling p 82.8 1.7 3.6E-05 48.6 4.8 98 44-150 514-616 (689)
138 COG1202 Superfamily II helicas 81.6 12 0.00026 42.9 10.9 174 458-638 618-826 (830)
139 KOG0385 Chromatin remodeling c 80.9 4.3 9.3E-05 47.7 7.4 112 18-137 475-599 (971)
140 COG0553 HepA Superfamily II DN 80.7 5.8 0.00013 47.8 9.1 84 46-137 737-822 (866)
141 PRK12901 secA preprotein trans 79.1 19 0.00042 44.2 12.2 117 5-135 606-739 (1112)
142 PRK12903 secA preprotein trans 78.4 4.4 9.5E-05 48.7 6.6 114 5-134 404-536 (925)
143 PRK12899 secA preprotein trans 77.2 5.1 0.00011 48.6 6.8 114 6-135 547-679 (970)
144 PF13871 Helicase_C_4: Helicas 76.5 3.3 7.2E-05 43.5 4.5 75 61-135 52-127 (278)
145 PRK12326 preprotein translocas 75.6 7 0.00015 46.3 7.2 114 6-134 406-544 (764)
146 TIGR00604 rad3 DNA repair heli 73.5 13 0.00029 44.3 9.1 79 57-137 565-674 (705)
147 KOG0925 mRNA splicing factor A 73.4 3.8 8.2E-05 45.8 4.1 65 70-137 313-387 (699)
148 TIGR00595 priA primosomal prot 67.8 43 0.00092 38.4 11.2 57 38-95 44-101 (505)
149 PRK14873 primosome assembly pr 67.2 8.1 0.00018 45.7 5.4 69 59-134 461-536 (665)
150 PF12029 DUF3516: Domain of un 67.0 7.5 0.00016 43.1 4.6 38 138-175 37-74 (461)
151 COG4096 HsdR Type I site-speci 66.4 8.5 0.00018 45.8 5.2 60 56-124 466-527 (875)
152 smart00847 HA2 Helicase associ 65.9 12 0.00026 31.8 5.0 59 463-523 3-61 (92)
153 PRK13103 secA preprotein trans 64.7 13 0.00028 45.1 6.4 79 5-87 427-514 (913)
154 smart00421 HTH_LUXR helix_turn 63.3 12 0.00027 28.0 4.1 41 571-611 5-45 (58)
155 PRK00118 putative DNA-binding 62.3 25 0.00054 31.5 6.3 56 566-621 14-70 (104)
156 KOG0389 SNF2 family DNA-depend 62.0 20 0.00043 42.6 7.0 96 43-147 800-898 (941)
157 cd06170 LuxR_C_like C-terminal 58.6 16 0.00034 27.6 3.9 33 576-608 7-39 (57)
158 COG3079 Uncharacterized protei 57.7 43 0.00094 32.4 7.3 121 507-639 21-163 (186)
159 PRK02362 ski2-like helicase; P 56.0 94 0.002 37.3 11.8 170 457-641 465-646 (737)
160 PRK05580 primosome assembly pr 56.0 87 0.0019 37.3 11.3 56 39-95 210-266 (679)
161 cd06171 Sigma70_r4 Sigma70, re 53.5 13 0.00029 27.2 2.7 41 572-612 13-54 (55)
162 PRK11664 ATP-dependent RNA hel 53.1 52 0.0011 40.0 8.9 65 457-523 384-448 (812)
163 PRK04217 hypothetical protein; 52.8 34 0.00073 30.9 5.6 51 570-620 43-94 (110)
164 PRK14873 primosome assembly pr 52.3 90 0.0019 37.1 10.5 113 29-149 197-314 (665)
165 TIGR03117 cas_csf4 CRISPR-asso 52.1 31 0.00067 40.6 6.6 84 59-143 507-622 (636)
166 PF12246 MKT1_C: Temperature d 51.8 26 0.00056 36.1 5.3 45 464-508 1-53 (243)
167 PF13518 HTH_28: Helix-turn-he 51.6 26 0.00057 26.2 4.1 35 576-610 4-38 (52)
168 PRK01172 ski2-like helicase; P 48.6 3.9E+02 0.0084 31.7 15.2 160 457-640 444-605 (674)
169 KOG0388 SNF2 family DNA-depend 47.6 53 0.0012 38.8 7.3 109 18-135 1032-1152(1185)
170 PRK10917 ATP-dependent DNA hel 46.2 43 0.00093 39.9 6.7 51 45-95 339-390 (681)
171 TIGR01970 DEAH_box_HrpB ATP-de 45.2 32 0.00069 41.8 5.5 61 457-519 381-443 (819)
172 KOG1002 Nucleotide excision re 45.0 87 0.0019 35.6 8.2 104 26-137 632-749 (791)
173 PF10985 DUF2805: Protein of u 43.9 20 0.00043 29.8 2.4 30 579-608 7-36 (73)
174 TIGR03643 conserved hypothetic 42.7 22 0.00047 29.5 2.4 29 579-607 8-36 (72)
175 PF04545 Sigma70_r4: Sigma-70, 39.8 46 0.00099 25.0 3.8 38 577-614 13-50 (50)
176 COG1110 Reverse gyrase [DNA re 39.4 29 0.00063 42.5 3.8 32 50-81 161-192 (1187)
177 COG1198 PriA Primosomal protei 39.4 1.4E+02 0.003 35.9 9.4 115 26-149 251-370 (730)
178 KOG1123 RNA polymerase II tran 38.3 53 0.0012 37.3 5.3 86 29-121 543-633 (776)
179 PF13384 HTH_23: Homeodomain-l 37.1 17 0.00036 27.3 1.0 34 576-609 9-42 (50)
180 PRK00254 ski2-like helicase; P 36.9 91 0.002 37.3 7.6 172 457-642 455-640 (720)
181 KOG0391 SNF2 family DNA-depend 36.0 92 0.002 39.1 7.1 104 23-137 1269-1387(1958)
182 KOG0923 mRNA splicing factor A 35.8 2.8E+02 0.006 33.0 10.5 136 457-623 652-791 (902)
183 TIGR00643 recG ATP-dependent D 33.9 84 0.0018 37.0 6.5 50 45-94 313-364 (630)
184 PRK12543 RNA polymerase sigma 33.8 54 0.0012 31.5 4.2 44 581-624 130-177 (179)
185 PRK11512 DNA-binding transcrip 31.7 69 0.0015 29.8 4.4 62 456-520 68-139 (144)
186 PF13936 HTH_38: Helix-turn-he 30.4 55 0.0012 24.2 2.8 31 577-607 13-43 (44)
187 KOG0201 Serine/threonine prote 29.6 53 0.0011 36.7 3.6 96 535-648 47-143 (467)
188 TIGR02337 HpaR homoprotocatech 28.8 1.4E+02 0.0031 26.5 5.8 54 548-610 15-68 (118)
189 PRK03573 transcriptional regul 27.9 94 0.002 28.7 4.6 61 456-520 60-130 (144)
190 smart00351 PAX Paired Box doma 25.5 87 0.0019 28.7 3.8 35 576-610 25-59 (125)
191 PRK03573 transcriptional regul 24.2 1.7E+02 0.0036 27.0 5.6 37 574-610 36-72 (144)
192 PF02796 HTH_7: Helix-turn-hel 23.3 88 0.0019 23.2 2.8 33 573-605 10-42 (45)
193 TIGR01967 DEAH_box_HrpA ATP-de 22.6 1.2E+02 0.0027 38.7 5.4 62 458-523 450-515 (1283)
194 PF00196 GerE: Bacterial regul 21.9 89 0.0019 24.2 2.7 43 570-612 4-46 (58)
195 PF08747 DUF1788: Domain of un 21.4 1.7E+02 0.0038 27.0 4.9 64 572-645 4-67 (126)
196 KOG0286 G-protein beta subunit 21.4 54 0.0012 34.7 1.7 52 435-486 6-57 (343)
197 KOG0387 Transcription-coupled 21.3 2.1E+02 0.0046 34.4 6.6 79 50-137 577-658 (923)
198 PF04420 CHD5: CHD5-like prote 21.1 2.3E+02 0.005 27.2 5.9 42 195-238 44-85 (161)
199 TIGR01054 rgy reverse gyrase. 21.1 1E+02 0.0023 39.1 4.4 36 47-82 155-190 (1171)
200 cd06571 Bac_DnaA_C C-terminal 20.1 2.7E+02 0.0059 23.8 5.6 46 583-637 43-89 (90)
No 1
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4e-157 Score=1276.03 Aligned_cols=637 Identities=58% Similarity=0.906 Sum_probs=611.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhcCCccCCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhh
Q 006319 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETF 80 (650)
Q Consensus 1 l~~l~~~~~~e~~~i~~~~~~~i~~l~~~d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tl 80 (650)
|++|||+|++||+.|.++|++||.+|+++|+.+||+.++.++|+||||+||+||+|+.|+.||.||++|.++|||||+||
T Consensus 403 m~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETF 482 (1041)
T KOG0948|consen 403 MSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETF 482 (1041)
T ss_pred hccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCcccccccc
Q 006319 81 SIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHL 160 (650)
Q Consensus 81 a~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~ 160 (650)
++|+||||++|||+..+||||..+||++.+||+||+|||||+|.|..|.||++.++++++...+.+++|+++||+|+|++
T Consensus 483 siGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhL 562 (1041)
T KOG0948|consen 483 SIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHL 562 (1041)
T ss_pred hhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCChHHHHHhhHHHHHhhcCccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 006319 161 SYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240 (650)
Q Consensus 161 ~~~~~l~ll~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 240 (650)
+|+|+||||++++++|++++++||+|||+..++|.+++++.+++++++.+.++++..+.+|+.++.++.++.+.++..+.
T Consensus 563 tYnMiLNLlRvEei~pe~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~i~~E~~v~~yh~l~~ql~~~~k~i~~~~~ 642 (1041)
T KOG0948|consen 563 TYNMILNLLRVEEISPEYMLERSFHQFQNYKALPDIEEKLKQLEEELDSINIPNEEEVKEYHDLELQLEKYGKDIREVIT 642 (1041)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCceEEEecCCCCCCCCCCCCCCccceEEEEEeeecccCccCCCCCCCCCCCCceEEEEeeccccCCC-C
Q 006319 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDG-A 319 (650)
Q Consensus 241 ~~~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~gvv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 319 (650)
+|++|++||+|||+|.++.+ +.+|+|||++++.+.++..+++.. ..+.+.|+|+++++|...... .
T Consensus 643 ~P~~~l~fLq~GRlV~v~~g------------~~d~~WGvvv~f~k~~~~~~~~~~-~~p~e~Y~vdvll~~~~~~~~~~ 709 (1041)
T KOG0948|consen 643 HPKYCLPFLQPGRLVKVKVG------------GDDFFWGVVVNFIKRKNSSKNSDQ-VGPHESYIVDVLLHCSTESSPVG 709 (1041)
T ss_pred CcchhcccccCCceEEEecC------------CCCCceeEEEEEEeccCCCCCccc-cCCCcceEEEEEeeeeccccccc
Confidence 99999999999999999998 688999999999887654443222 223348999999999733321 1
Q ss_pred CCCcccccCCCCCCCeEEEEecccceeccccceeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC-CCcccccCCCChHH
Q 006319 320 GKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSY 398 (650)
Q Consensus 320 ~~~~~~p~~~~~~~~~~~~~v~~~~i~~i~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~p-l~~~~~~~i~~~~~ 398 (650)
......|+.+++.+.|.++|+.++.|..||++|+++|+++++.++|.++.+.++++.++||+|+| +||++||+|.+.++
T Consensus 710 ~~~~~~p~~~~ek~~~~vvpv~l~~i~~is~~r~~iP~dl~~~d~r~~~~k~v~e~~~rfp~gip~LdPv~dM~I~~~~~ 789 (1041)
T KOG0948|consen 710 AKKVNVPPRPNEKGEMEVVPVLLTLIDAISSIRLYIPKDLRSVDARLSVLKAVQEVKSRFPDGIPLLDPVKDMNIKDVEF 789 (1041)
T ss_pred cCcCCCCCCCCCCCceEEEeeeHHHHhhhhHHHhcCcccccCcchHHHHHHHHHHHHHhcCCCCCCcChhhccCccchHH
Confidence 22223455678899999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHHHHhHhCCcCCCCcc
Q 006319 399 QKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVV 478 (650)
Q Consensus 399 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~e~~~~~~VL~~Lgyid~~~~v 478 (650)
.++.++++.++.++..||.|+.|+.++.|+.+++|..|..++++++.++++++...+++|+++|++|||+|||++.+++|
T Consensus 790 ~~~~~k~e~lE~~l~~hp~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvi 869 (1041)
T KOG0948|consen 790 KKLVKKIESLEARLESHPLHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVI 869 (1041)
T ss_pred HHHHHHHHHHHHhhccCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcC
Q 006319 479 ELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECK 558 (650)
Q Consensus 479 t~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~~~~~~l~~~L~~~~~~l~~~a~~I~~v~~e~~ 558 (650)
.+||||||||+|+|||++|||||+|.|++|+|+|+||||||||||+++++.+.+.++|+.++.+|++.|++|++|+.+|+
T Consensus 870 e~KGrvACEIsSgDELlLTEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecK 949 (1041)
T KOG0948|consen 870 ELKGRVACEISSGDELLLTELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRIAKVSKECK 949 (1041)
T ss_pred EEcceEEEEecccchHHHHHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhh
Q 006319 559 VQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKI 638 (650)
Q Consensus 559 l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~~~a~~~I 638 (650)
+++++++|+++|+|.||+|||+||+|++|++||++||+||||||||+|||+||||||++||++|||++|++||++|+.+|
T Consensus 950 lEide~~Yv~sFkp~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~~~~i 1029 (1041)
T KOG0948|consen 950 LEIDEEDYVESFKPELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEAIKKI 1029 (1041)
T ss_pred cccCHHHHHHhcChHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeccCCCC
Q 006319 639 KRDIVFAASLYL 650 (650)
Q Consensus 639 kRdIVfa~SLYl 650 (650)
|||||||+||||
T Consensus 1030 kRDIVFAaSLYL 1041 (1041)
T KOG0948|consen 1030 KRDIVFAASLYL 1041 (1041)
T ss_pred hhceeehhhccC
Confidence 999999999997
No 2
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.2e-116 Score=973.79 Aligned_cols=624 Identities=34% Similarity=0.541 Sum_probs=530.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhcCCccCCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhh
Q 006319 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETF 80 (650)
Q Consensus 1 l~~l~~~~~~e~~~i~~~~~~~i~~l~~~d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tl 80 (650)
|.+++||+..||++|+-|+++++.+|+++||.+||+-++.++|.+|||+||||++|..|+.||.||+.|.+||||||+||
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC-CcHHHHHHHhcCCCCccccccc
Q 006319 81 SIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK-MEPSTAKMMLKGSADSLNSAFH 159 (650)
Q Consensus 81 a~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~~~~~~~~~pl~S~~~ 159 (650)
||||||||++|||.+++|+||.++|.+.|.||+||+|||||+|+|.+|.++++|.+. +....+++++.|.+.+|+|||+
T Consensus 667 AMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFR 746 (1248)
T KOG0947|consen 667 AMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFR 746 (1248)
T ss_pred hhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999887 7888999999999999999999
Q ss_pred cChHHHHHHHHhcCCChHHHHHhhHHHHHhhcCccHHHHHHHHHHHHhccccccc----hhhHHHHHHHHHHHHHHHHHH
Q 006319 160 LSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEE----EDSLKNYYNLLQQYKSLKKDV 235 (650)
Q Consensus 160 ~~~~~~l~ll~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~y~~~~~~~~~~~~~~ 235 (650)
+||+|+||+++++...+|+|+++||++|.+.+..+..++.+.++++++..+...+ ..++.+|+.+-.++..++.++
T Consensus 747 lTY~MILnLLRve~lrvEdm~krSf~E~~s~~~~~~~eq~l~~~~eel~sie~s~c~~~~~~l~kyl~a~~e~~e~~~~l 826 (1248)
T KOG0947|consen 747 LTYGMILNLLRVEALRVEDMMKRSFSEFVSQRLSPEHEQELKELDEELLSIEESDCAIDLKDLRKYLSAYEEITEYNEKL 826 (1248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999989999999999999999999999999999999988877554 478999999999999999999
Q ss_pred HHhhcCcccccccCCCCceEEEecCCCCCCCCCCCCCCccceEEEEEeeecccCccCCCCCCCCCCCCceEEEEeecccc
Q 006319 236 RDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVS 315 (650)
Q Consensus 236 ~~~~~~~~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~gvv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 315 (650)
+..+.+..+.+.+|..||+|.+++. +.....|+|+......+ ...+.++..|..+
T Consensus 827 ~~~~~~s~~~~~~l~~GR~vv~k~~------------~~~~~lg~vl~~s~~t~-------------~~~~~~~~~~~~p 881 (1248)
T KOG0947|consen 827 REEKMKSANILRILKEGRVVVLKNL------------KEENNLGVVLKVSLNTN-------------GRVCVVLVAYLKP 881 (1248)
T ss_pred HHHHhhchhhhhhhhcCcEEEEcCh------------hhhcccceEEEEecCCC-------------cceEEEEEeeccC
Confidence 9988888899999999999999984 22334555554333211 0111111111111
Q ss_pred CCCCC-----------------------CCcccccCCCCCCCeEEEEec-----ccceeccccceeeCCCCCCCHHHHHH
Q 006319 316 KDGAG-----------------------KKTLKIVPLKESGEPLVVSVP-----ISQIIKLSSARLPMPKDLLPLQTREN 367 (650)
Q Consensus 316 ~~~~~-----------------------~~~~~p~~~~~~~~~~~~~v~-----~~~i~~i~~~~~~~~~~~~~~~~r~~ 367 (650)
.++.+ +......+.+....+....++ ++.|.-++...+..+...........
T Consensus 882 ~~~~~~~~~~s~a~~~~p~~l~af~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~ie~l~~~~~~~~~~~~~D~~~aa 961 (1248)
T KOG0947|consen 882 LDNKNGSLDPSFALNLIPDSLLAFEKFFPNVPRNVPLGSLNPLYLSGVTAYVKGVPNIEILCGDALRQIIGKVADGQKAA 961 (1248)
T ss_pred CcCcCCCcCcccccccCcchhhccccccCCcccccceecccccchhccchhhcCCcchhhhhccccccccccccccHHHH
Confidence 11000 000000111222222222222 12222222211222111110111111
Q ss_pred HHHHHHHHHH---hcCCCCC-CCcccccCCCChHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 006319 368 MLKSTSEFLA---RNASGLP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSI 443 (650)
Q Consensus 368 ~~~~l~~~~~---~~~~~~p-l~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 443 (650)
+.....++.. .-..++| .+|+++.+.++.++.+...+...+++.+...||+.||++++||....++.+++.++++|
T Consensus 962 l~~~~~~~l~l~~~~~~~~~~~epv~~~k~kd~e~~~~~l~~~n~~~~~~~~~~i~c~~f~~h~s~~~~~~~~~~ei~~L 1041 (1248)
T KOG0947|consen 962 LNESTAQVLDLLEGSLETPTWKEPVNDSKLKDDEVVEMLLERTNLQNLIQGNPCISCPKFDQHYSLARREYKIEKEIENL 1041 (1248)
T ss_pred HHHHHHHhhhhhhcCccCcchhhhhhhhhhccHHHHHHHHHHHHHHHHHhcCCccCCccHHHHHHHHHHHHHHHHHhhhh
Confidence 2222222222 2234477 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhcchhHHHHHHHHHHHhHhCCcCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceee
Q 006319 444 KRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQ 523 (650)
Q Consensus 444 ~~~l~~~~~~~~~~e~~~~~~VL~~Lgyid~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~q 523 (650)
+.++++ +++.+.|+|.+|+.||+.+||+|...+|++||||||||+|++|||+|||||+|.|.+|+|+|+|||||+||||
T Consensus 1042 ~~~~sd-~~L~l~pey~~RlevLk~~g~vD~~~~V~lkGRvAceI~s~~ELllteli~dn~l~~l~peeiaallSslV~e 1120 (1248)
T KOG0947|consen 1042 EFELSD-QSLLLSPEYHNRLEVLKPLGFVDEMRTVLLKGRVACEINSGNELLLTELIFDNALVDLSPEEIAALLSSLVCE 1120 (1248)
T ss_pred hhhhhh-hhhhhCHHHHHHHHHHhhcCcccccceeeecceeeeeecCCcchhHHHHHHhhhhhhcCHHHHHHHHHHHHhc
Confidence 999999 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc-cccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHH
Q 006319 524 EKLQDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVE-GFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLI 602 (650)
Q Consensus 524 ek~~~~~~l~~~L~~~~~~l~~~a~~I~~v~~e~~l~i~~~-~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IV 602 (650)
+++...|.+++.+.++-+++.++++++..++..|++.++++ +|...++|+||+|||+||+|+||++||++|++.||+||
T Consensus 1121 ~~~e~~~~~~~~l~k~~e~v~~v~~rl~ev~~~~~~~~~~~e~f~~~lrF~l~evVYeWA~G~sf~eim~~t~~~EG~iV 1200 (1248)
T KOG0947|consen 1121 GKTERPPTLTPYLKKGKERVRDVAKRLEEVQSSHQLLQTPEEEFPCELRFGLVEVVYEWARGLSFKEIMELTDVLEGLIV 1200 (1248)
T ss_pred CccccCCCCChhhhhHHHHHHHHHHHHHHHHHhhccccCchhhccccccccHHHHHHHHHcCCCHHHHHhhhCCcchhHH
Confidence 99977789999999999999999999999999999988875 67888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCCeeeccCCCC
Q 006319 603 RAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650 (650)
Q Consensus 603 R~irRL~Ellrq~~~Aa~~iGn~~L~~k~~~a~~~IkRdIVfa~SLYl 650 (650)
|||+||||+|||+++||+++|||.|..||++|+++|||||||++|||+
T Consensus 1201 R~I~RLdE~cre~~~aa~ivGd~~L~~Km~~as~~ikRdIVFaaSLY~ 1248 (1248)
T KOG0947|consen 1201 RLIQRLDEVCRELRNAARIVGDPVLHEKMEAASALIKRDIVFAASLYL 1248 (1248)
T ss_pred HHHHHHHHHHHhhhccceecCcHHHHHHHHHHHHHhccCccchhhccC
Confidence 999999999999999999999999999999999999999999999997
No 3
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.4e-90 Score=796.13 Aligned_cols=623 Identities=37% Similarity=0.551 Sum_probs=534.0
Q ss_pred CCCCCCCCHHHHHH-HHHHHHHHhhcCCccCCCch-hHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEech
Q 006319 1 MAKLDLTEDDEKVN-IETIFWSAMDMLSDDDKKLP-QVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE 78 (650)
Q Consensus 1 l~~l~~~~~~e~~~-i~~~~~~~i~~l~~~d~~~~-~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~ 78 (650)
++++|++..+|++. |+.+|++++.+|.++|+.+| |+..+.++|.+|||+||+||+|..|+.||.||++|.++|+|||+
T Consensus 399 ~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTe 478 (1041)
T COG4581 399 LSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATE 478 (1041)
T ss_pred hcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehh
Confidence 35677777777777 99999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC-CcHHHHHHHhcCCCCccccc
Q 006319 79 TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK-MEPSTAKMMLKGSADSLNSA 157 (650)
Q Consensus 79 tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~~~~~~~~~pl~S~ 157 (650)
||++|+||||++||+.+++||||..+++++++||+||+|||||+|+|..|.++++..+. .++.....+..|.++|+.|+
T Consensus 479 T~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~ 558 (1041)
T COG4581 479 TFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQ 558 (1041)
T ss_pred hhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999995554 44888899999999999999
Q ss_pred cccChHHHHHHHHhcCCC-hHHHHHhhHHHHHhhcCccHHHHHHHHHHHHhcccccc----chhhHHHHHHHHHHHHHHH
Q 006319 158 FHLSYNMLLNQIRCEEGS-PENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIE----EEDSLKNYYNLLQQYKSLK 232 (650)
Q Consensus 158 ~~~~~~~~l~ll~~~~~~-~e~~~~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~y~~~~~~~~~~~ 232 (650)
|+++|+|++|++++++.. ++.++++||++|++....+...+.+...++++..+... ++.++..| ...+.+++
T Consensus 559 f~~sy~milnll~v~~l~~~e~ll~~Sf~q~~~~~~l~~~~~~l~~~~~~~~~i~~~~~~~d~~~~~~~---~~~~~k~~ 635 (1041)
T COG4581 559 FRLSYNMILNLLRVEGLQTAEDLLERSFAQFQNSRSLPEIVEKLERLEKELNDIATELFGTDENDAPKL---SLDYEKLR 635 (1041)
T ss_pred eecchhHHHhhhhhcccCcHHHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhccccccchHHH---HHHHHHHH
Confidence 999999999999999998 99999999999999999999999999999999988766 55666666 45666777
Q ss_pred HHHHHhhcCcccccccCCCCceEEEecCCCCCCCCCCCCCCccceEEEEEeeecccCccCCCCCCCCCCCCceEEEEeec
Q 006319 233 KDVRDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRC 312 (650)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~gvv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 312 (650)
+.+...+.++..+..+++.||++.+..+. ....||.++....... +.......+...++...
T Consensus 636 ~~l~~~~~~~a~~~r~~~~gr~~~~~~~~------------~~~~~g~~~~~~~r~~------~~~t~~~~~~~~~~~~~ 697 (1041)
T COG4581 636 KKLNEEMRLQAAGLRALRKGRVVQIKDGL------------AALFWGRLLKLTKRYT------TKLTDHELYLAVLVEPN 697 (1041)
T ss_pred HHHHHHHHHHHhHHHHhhhcceeeeecch------------hhhhheeeeeeccccc------cccccchheehheeccc
Confidence 77777788888888999999999999872 2356887776654411 00000111222121111
Q ss_pred cccCCC------CCCCcccccCCCCCCCeEEEEecccceeccccceeeCCCCCCCHHHHHHHHHHHHHHHHhcCCC-CC-
Q 006319 313 VVSKDG------AGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASG-LP- 384 (650)
Q Consensus 313 ~~~~~~------~~~~~~~p~~~~~~~~~~~~~v~~~~i~~i~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~-~p- 384 (650)
+ ..+. ..+...++........+.+.++++..+..+....+.+|..+.....+-.-...+.+....+.++ .+
T Consensus 698 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1041)
T COG4581 698 A-DFSFPRPLVKAMPHMNRESRWLVKILFRISFVYLLNATEILELILTMPRRLLSRQGKLRRGEPSNEAIAAGLDGNEKI 776 (1041)
T ss_pred C-CccchhHHhhcccccccccccccccceeeeeeeeccccccchhhhcCCHhHhhcccchhccchhHHHHHhccccchhh
Confidence 0 0000 0001111222233456677888888888888888899976432222222233445555566665 34
Q ss_pred CCcccccCCCChHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHH
Q 006319 385 LDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKR 464 (650)
Q Consensus 385 l~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~e~~~~~~ 464 (650)
+.++..|++..+++..........+..+..+|.+.|+.+++|++.......|..+++++...+ +.+.+.++|..+.+
T Consensus 777 le~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~---~~~~~l~~~~~l~~ 853 (1041)
T COG4581 777 LENVVEMKIQVPELTVSLLKLRFGRYHLSENPLMNFDGAERLIENELLLSDLQAEIEDLSSSI---EALSFLDDYKTLQE 853 (1041)
T ss_pred hhhcccccccchhHHHHHHHHhhcccccCCCccccchHHHHHHHhHhHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999998 44567899999999
Q ss_pred HHhHhCCcCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccCC----CCCCCcHHHHHHH
Q 006319 465 VLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQ----DASKPREELELLF 540 (650)
Q Consensus 465 VL~~Lgyid~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~~----~~~~l~~~L~~~~ 540 (650)
+|+.+||++.+..|+.|||+||||+|++||++|||||+|.|++|+|+|+||++|||||+++++ +.+.++|.|.+++
T Consensus 854 ~l~~~g~~~~~~~v~~kGr~a~eI~s~~ellL~e~i~~g~f~~l~p~e~aallSa~v~e~~~~d~~~~~~~~~~~l~~~~ 933 (1041)
T COG4581 854 VLKKLGFIEDNAVVLIKGRVAAEISSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEEKTDDGTAEAPEITPALRDAL 933 (1041)
T ss_pred HHHhhcCCCcccccccccceeeeecCCCchHHHHHHHcCCccCCCHHHHHHHHHheeeccCCcccccccccCCHHHHhHH
Confidence 999999999989999999999999999999999999999999999999999999999999997 4467899999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhh
Q 006319 541 TQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAK 620 (650)
Q Consensus 541 ~~l~~~a~~I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~ 620 (650)
..+.+++.+|.+++++|++++.++ ++.|.++||+|||+||+|++|.+||.+|+++|||+||+++|++|+|+|+.+||.
T Consensus 934 ~~l~e~~~kl~~~~~~~~i~~~~~--l~~~~~~lm~vv~~wa~g~s~~~i~~~~~~~eGs~vR~~~r~~ell~ql~~aa~ 1011 (1041)
T COG4581 934 LRLLELARKLNKDQNSSQIEIYPE--LNDFSVGLMEVVYEWARGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAAS 1011 (1041)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCcc--cccccccHHHHHHHHHhhcchhhhhcCCcccccchhhhhhHHHHHHHHhhhccc
Confidence 999999999999999999999865 788999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCeeeccCCCC
Q 006319 621 SIGETELEAKFEEAVSKIKRDIVFAASLYL 650 (650)
Q Consensus 621 ~iGn~~L~~k~~~a~~~IkRdIVfa~SLYl 650 (650)
++||++|.+||..|+..|||||||++|||+
T Consensus 1012 ~ig~~~L~~k~~~~~~~irr~iv~~~sly~ 1041 (1041)
T COG4581 1012 VIGNPELEEKAYRAIQEIRRDIVFVDSLYL 1041 (1041)
T ss_pred ccCCHHHHHHHHHHHHhhhcCeEecccccC
Confidence 999999999999999999999999999996
No 4
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=100.00 E-value=2.9e-53 Score=414.48 Aligned_cols=177 Identities=51% Similarity=0.830 Sum_probs=147.9
Q ss_pred cCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccCCCC---CCCcHHHHHHHHHHHHHHH
Q 006319 472 ATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDA---SKPREELELLFTQLQDTAR 548 (650)
Q Consensus 472 id~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~~~~---~~l~~~L~~~~~~l~~~a~ 548 (650)
||++++||+|||+||+|+++|||++|||||+|+|++|+|+|+||++||||||++.++. ..+++.+..+++++.++++
T Consensus 1 id~~~~vt~kGr~a~~I~~~~eLl~te~l~~g~f~~L~p~elAa~lS~~v~e~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 80 (180)
T PF08148_consen 1 IDEDNVVTLKGRVACEIYSEDELLLTELLFSGVFDDLDPAELAALLSCFVYEPRREDEEERYPPSPRLREALEQLQEIAE 80 (180)
T ss_dssp B-TTS-BSHHHHHHCC--SSTHHHHHHHHHCTCCCCS-HHHHHHHHHHHC-----SS---------HHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHcCcccHHHHHHHHcCCCCCCCHHHHHHHHHHhhcccccCcccccccccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999888765 2233489999999999999
Q ss_pred HHHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhhcCCHHHH
Q 006319 549 RVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELE 628 (650)
Q Consensus 549 ~I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~ 628 (650)
+|.+++.+||+ ++++|++.++|+||++||+||+|+||++||++|+++|||||||+||++|+||||++||+++||++|+
T Consensus 81 ~l~~~~~~~~l--~~~~~~~~~~~~l~~~v~~Wa~G~~~~~i~~~t~l~EGdiVR~~rRl~dlLrql~~aa~~~g~~~L~ 158 (180)
T PF08148_consen 81 RLAKVEREHGL--DEEEYVERFDPGLMEVVYAWASGASFAEILEMTDLFEGDIVRWIRRLIDLLRQLANAAKIIGDPELA 158 (180)
T ss_dssp HHHHHHHHTT---HHHHHHHCSTTTTHHHHHHHHCT--HHHHCCT-SS-HHHHHHHHHHHHHHHHHHHHHHHCCT-HHHH
T ss_pred HHHHHHHHhCC--CCcccccCCCccHHHHHHHHHCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999 6678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeeeccCCCC
Q 006319 629 AKFEEAVSKIKRDIVFAASLYL 650 (650)
Q Consensus 629 ~k~~~a~~~IkRdIVfa~SLYl 650 (650)
+|+++|+++|||||||++||||
T Consensus 159 ~~~~~a~~~i~R~iV~~~SLYl 180 (180)
T PF08148_consen 159 EKAREAIDLIRRDIVFASSLYL 180 (180)
T ss_dssp HHHHHHHHHHSHCCCC---TT-
T ss_pred HHHHHHHHhccCCccccccccC
Confidence 9999999999999999999997
No 5
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=100.00 E-value=1.4e-40 Score=345.38 Aligned_cols=261 Identities=41% Similarity=0.699 Sum_probs=216.8
Q ss_pred HHHHHhhHHHHHhhcCccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCCCceEE
Q 006319 177 ENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRFVC 256 (650)
Q Consensus 177 e~~~~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gr~v~ 256 (650)
|+||++||+|||+.+.+|.+++++++++++++.+.+.++.++.+||+++.++..++++++..+.+|.++++||+|||||+
T Consensus 1 E~mikrSF~qfq~~~~lP~~~~~~~~~e~~~~~i~~~~~~~v~~y~~l~~~l~~~~~~~~~~i~~p~~~~~fL~~GRlV~ 80 (268)
T PF13234_consen 1 EYMIKRSFSQFQNQRKLPELEKKLKELEEELDAIKIEDEEDVEEYYDLRQELEELRKELRKIITSPKYCLPFLQPGRLVV 80 (268)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHCS--TTCTCCHHHHHHHHHHHHHHHHHHHHHCTCCCHHHHS-TTEEEE
T ss_pred ChhHHHhHHHHcccccCHHHHHHHHHHHHHHHhcccccHhHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHhCCCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCCccceEEEEEeeecccCccCCCCCCCCCCCCceEEEEeeccccCCCC-----CCCcccccCCCC
Q 006319 257 IECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGA-----GKKTLKIVPLKE 331 (650)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~gvv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~p~~~~~ 331 (650)
|+++ +.+||||||+++.+..+...+.+........|+|+|+++|..+.... .+..+.|+..++
T Consensus 81 v~~~------------~~~~~wgvvv~~~~~~~~~~~~~~~~~~~~~~vVdvL~~~~~~~~~~~~~~~~~~~~~p~~~~~ 148 (268)
T PF13234_consen 81 VRDG------------DRDFGWGVVVNFAKKSNPKGNLGSSSSKEKSYVVDVLLPCSPDSKSAKNSSDLPEPVKPCSPGE 148 (268)
T ss_dssp EEET------------TCEEEEEEEEEEEE---SS--TT-SSSTCCCEEEEEECCCEETTS-CCGTTTGGCTS-BS-TT-
T ss_pred EecC------------CCccceeEEEeccccccccccccccCCCCCcEEEEEEeeccccccccccccCCCCCCCCCCCCC
Confidence 9987 68999999999987653221101123345579999999996321111 134567777778
Q ss_pred CCCeEEEEecccceeccccceeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC-CCcccccCCCChHHHHHHHHHHHHHH
Q 006319 332 SGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSYQKLVRRIEALES 410 (650)
Q Consensus 332 ~~~~~~~~v~~~~i~~i~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~p-l~~~~~~~i~~~~~~~~~~~~~~l~~ 410 (650)
.+++.++||++++|..||++++++|+++++.++|+.+.+.++++.++||+|+| |||++||+|++.+|.++..+++.|++
T Consensus 149 ~~~~~vv~v~l~~I~~ISs~rl~lp~dl~~~~~r~~~~~~l~el~~r~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~ 228 (268)
T PF13234_consen 149 KGEMEVVPVPLSCISSISSVRLKLPKDLRPQEARKQVLKSLQELLKRFPDGIPLLDPIKDMKIKDPEFVELVKKIEALEK 228 (268)
T ss_dssp -EEEEEEEEECCGEEEEEEEE----TTTTSCCCHHHHHHHHHHHHHHSSS--TCHHCHHHH----HHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeeHHHHHHhhceeeeCcccccchHHHHHHHHHHHHHHHhCCCCCCccChHHhCCCCcHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006319 411 LFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRS 449 (650)
Q Consensus 411 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 449 (650)
+|.+||||.||++++||..+++|.+|+.+++.|+++|++
T Consensus 229 rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 229 RLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp HHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999976
No 6
>PRK02362 ski2-like helicase; Provisional
Probab=99.90 E-value=5.5e-23 Score=241.63 Aligned_cols=189 Identities=25% Similarity=0.391 Sum_probs=144.6
Q ss_pred HHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCC-CccccCHhHHHh
Q 006319 36 VSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD-KFRWISSGEYIQ 114 (650)
Q Consensus 36 ~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~-~~~~~~~~e~~q 114 (650)
...|.+++..|||+|||||++.+|+.||.+|++|.++|||||+|+++|||+|+++|||.++++||+. +..|+++.+|+|
T Consensus 295 ~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Q 374 (737)
T PRK02362 295 SKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQ 374 (737)
T ss_pred cHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999999999999976 456899999999
Q ss_pred hhccCCCCCCCCceEEEEeecCCC-cHHHHHHHhcCCCCccccccccChHH---HHHHHHhcCC----ChHHHHHhhHHH
Q 006319 115 MSGRAGRRGIDERGICILMVDDKM-EPSTAKMMLKGSADSLNSAFHLSYNM---LLNQIRCEEG----SPENLLRNSFYQ 186 (650)
Q Consensus 115 m~GRAGR~g~d~~G~~ii~~~~~~-~~~~~~~~~~~~~~pl~S~~~~~~~~---~l~ll~~~~~----~~e~~~~~sf~~ 186 (650)
|+|||||+|.|..|.+++++.+.. ..+.+++++.+++.|++|+|...+.+ +++.+....+ +..+++..+|..
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~ 454 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYA 454 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHH
Confidence 999999999999999999997753 24467788888999999999754433 3333333322 255678999988
Q ss_pred HHhhcCccHHHHHHHHHHHHhcc----------ccccchhhHHHHHHHH
Q 006319 187 FQADHAIPDLEKQAKVLEEERDS----------MVIEEEDSLKNYYNLL 225 (650)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~y~~~~ 225 (650)
++.... ..+...+......+.. +..+..+.+..+|++.
T Consensus 455 ~~~~~~-~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~ 502 (737)
T PRK02362 455 TQTDDT-GRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYID 502 (737)
T ss_pred hhccch-HHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCC
Confidence 765321 1233333333333322 2334456677766664
No 7
>PRK00254 ski2-like helicase; Provisional
Probab=99.89 E-value=2.2e-22 Score=236.08 Aligned_cols=189 Identities=27% Similarity=0.319 Sum_probs=146.8
Q ss_pred HHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhh
Q 006319 36 VSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQM 115 (650)
Q Consensus 36 ~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm 115 (650)
...|.+++.+||++|||||++.+|..||++|++|.++|||||+|++||||+|+++|||.++++|++.+..+++..+|+||
T Consensus 287 ~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm 366 (720)
T PRK00254 287 NEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQM 366 (720)
T ss_pred cHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHh
Confidence 45677889999999999999999999999999999999999999999999999999999999998666667789999999
Q ss_pred hccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccC---hHHHHHHHHhcCCC----hHHHHHhhHHHHH
Q 006319 116 SGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLS---YNMLLNQIRCEEGS----PENLLRNSFYQFQ 188 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~---~~~~l~ll~~~~~~----~e~~~~~sf~~~~ 188 (650)
+|||||+|.|..|.+++++.+....+.+++++.|.++++.|.+... ...+++.+....+. .-+++..+|..++
T Consensus 367 ~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~ 446 (720)
T PRK00254 367 MGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQ 446 (720)
T ss_pred hhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHh
Confidence 9999999999999999999875435678889999998888887543 34455555554443 3457899998775
Q ss_pred hhcCccHHHHHHHHHHHHhc-----------cccccchhhHHHHHHHH
Q 006319 189 ADHAIPDLEKQAKVLEEERD-----------SMVIEEEDSLKNYYNLL 225 (650)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~y~~~~ 225 (650)
... ...++..+.+.-..+. .+..+..+.+..+|++.
T Consensus 447 ~~~-~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~ 493 (720)
T PRK00254 447 RKD-LYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYID 493 (720)
T ss_pred hcC-hHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCC
Confidence 432 1223333443333322 23445567777787775
No 8
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=7.4e-24 Score=240.97 Aligned_cols=174 Identities=25% Similarity=0.415 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCCchhH--HhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCC
Q 006319 9 DDEKVNIETIFWSAMDMLSDDDKKLPQV--SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNM 86 (650)
Q Consensus 9 ~~e~~~i~~~~~~~i~~l~~~d~~~~~~--~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~ 86 (650)
..+....++.+-+.-......|..+|.- +.|.++.++|+|+||+||+..+|..+|..|+.|.++||+||+|+|||||+
T Consensus 359 R~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNL 438 (1230)
T KOG0952|consen 359 RNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNL 438 (1230)
T ss_pred ChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCC
Confidence 3344444444444334455556665554 78899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeccccccCCC--ccccCHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccChHH
Q 006319 87 PAKTVVFTNVRKFDGDK--FRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNM 164 (650)
Q Consensus 87 pa~~VVi~~~~k~dg~~--~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~~~~ 164 (650)
||..|||.|++.||.+. +..++..+.+||.|||||++.|..|.++|++..+ ....+..++.| ..|++|+|....--
T Consensus 439 PA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d-kl~~Y~sLl~~-~~piES~~~~~L~d 516 (1230)
T KOG0952|consen 439 PAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD-KLDHYESLLTG-QNPIESQLLPCLID 516 (1230)
T ss_pred cceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc-HHHHHHHHHcC-CChhHHHHHHHHHH
Confidence 99999999999999875 5667899999999999999999999999999887 56777888866 67999999766555
Q ss_pred HHHH----HHhcCCC-hHHHHHhhH
Q 006319 165 LLNQ----IRCEEGS-PENLLRNSF 184 (650)
Q Consensus 165 ~l~l----l~~~~~~-~e~~~~~sf 184 (650)
.||. .++.+++ +-.|+..+|
T Consensus 517 nLnAEi~LgTVt~VdeAVeWL~yTy 541 (1230)
T KOG0952|consen 517 NLNAEISLGTVTNVDEAVEWLKYTY 541 (1230)
T ss_pred hhhhheeeceeecHHHHHHHhhcee
Confidence 5552 2344444 333455554
No 9
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=1.3e-23 Score=241.36 Aligned_cols=220 Identities=24% Similarity=0.348 Sum_probs=160.0
Q ss_pred HhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccc--cCHhHHHh
Q 006319 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRW--ISSGEYIQ 114 (650)
Q Consensus 37 ~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~--~~~~e~~q 114 (650)
..|+++|.+|+|+||+||...+|+.+|.+|+.|.++|+|+|.|+|||||+||++|||.|++-||+...+| +++-|.+|
T Consensus 600 ~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~q 679 (1674)
T KOG0951|consen 600 PDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQ 679 (1674)
T ss_pred hhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999976555 68999999
Q ss_pred hhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccChHHHHHHHHhcCCC----hHHHHHhhHHH----
Q 006319 115 MSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGS----PENLLRNSFYQ---- 186 (650)
Q Consensus 115 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~~~~~l~ll~~~~~~----~e~~~~~sf~~---- 186 (650)
|.|||||++.|..|.+++.++.. +..++.+++ .++.|++|+|.....-.||.--+.|+. ..+++..+|.-
T Consensus 680 mlgragrp~~D~~gegiiit~~s-e~qyyls~m-n~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~ 757 (1674)
T KOG0951|consen 680 MLGRAGRPQYDTCGEGIIITDHS-ELQYYLSLM-NQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMV 757 (1674)
T ss_pred HHhhcCCCccCcCCceeeccCch-HhhhhHHhh-hhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeec
Confidence 99999999999999999988776 455555554 467899999844433333322222211 12222222211
Q ss_pred -------------------HHhh---cCccHHHH-HHHHHHHHhccccccchhhHHHHHHHH-HHHHHHHHHHHHhhcCc
Q 006319 187 -------------------FQAD---HAIPDLEK-QAKVLEEERDSMVIEEEDSLKNYYNLL-QQYKSLKKDVRDIVFSP 242 (650)
Q Consensus 187 -------------------~~~~---~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~~~~~~ 242 (650)
...+ .+.-.+++ .+..+.++-+.+..++.+.++++|++. .++..+++.+.+.+.++
T Consensus 758 ~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i 837 (1674)
T KOG0951|consen 758 RNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEI 837 (1674)
T ss_pred cCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccc
Confidence 1100 00001111 233334444456677788998888775 67888999999988888
Q ss_pred ccccccCCCCceEEEe
Q 006319 243 KYCLPFLQPGRFVCIE 258 (650)
Q Consensus 243 ~~~~~~l~~gr~v~~~ 258 (650)
+.+.-|..+.++-.+.
T Consensus 838 ~lfrifs~seEfk~~s 853 (1674)
T KOG0951|consen 838 DLFRIFSKSEEFKYVS 853 (1674)
T ss_pred hhhhhhhhccccccCC
Confidence 8777777666665553
No 10
>PRK01172 ski2-like helicase; Provisional
Probab=99.88 E-value=4.5e-22 Score=232.01 Aligned_cols=153 Identities=26% Similarity=0.435 Sum_probs=130.7
Q ss_pred HhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhh
Q 006319 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMS 116 (650)
Q Consensus 37 ~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~ 116 (650)
..+.+++.+||++|||||++.+|+.|+.+|++|.++|||||+++++|||+|+++|||.++.+|++.+++|+++.+|.||+
T Consensus 278 ~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~ 357 (674)
T PRK01172 278 DSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMI 357 (674)
T ss_pred HHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHh
Confidence 46778889999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred ccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccChHHHHHHH---HhcCC----ChHHHHHhhHHHHHh
Q 006319 117 GRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQI---RCEEG----SPENLLRNSFYQFQA 189 (650)
Q Consensus 117 GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~~~~~l~ll---~~~~~----~~e~~~~~sf~~~~~ 189 (650)
|||||+|.|..|.+++++.+..+.+.+++++.+.+.|++|.+.....+..+++ ....+ +..+++..+|..++.
T Consensus 358 GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~ 437 (674)
T PRK01172 358 GRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQN 437 (674)
T ss_pred hcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcC
Confidence 99999999999999999887655677889999999999999875544444432 22221 255677888886654
No 11
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.88 E-value=8.2e-23 Score=237.44 Aligned_cols=154 Identities=29% Similarity=0.507 Sum_probs=124.1
Q ss_pred HhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecccccc-CCCccccCHhHHHhh
Q 006319 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFD-GDKFRWISSGEYIQM 115 (650)
Q Consensus 37 ~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~d-g~~~~~~~~~e~~qm 115 (650)
..|.+++..|||+||+||++.+|..||..|+.|.|+||+||+|||||||+||++|||.+++.|| ..+.+++++.||+||
T Consensus 307 ~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM 386 (766)
T COG1204 307 EELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQM 386 (766)
T ss_pred HHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhc
Confidence 6789999999999999999999999999999999999999999999999999999999999999 335788999999999
Q ss_pred hccCCCCCCCCceEEEEeecCCCcH-HHHHHHhcCCCCccccccccChH---HHHHHHHhcCC----ChHHHHHhhHHHH
Q 006319 116 SGRAGRRGIDERGICILMVDDKMEP-STAKMMLKGSADSLNSAFHLSYN---MLLNQIRCEEG----SPENLLRNSFYQF 187 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~~~~-~~~~~~~~~~~~pl~S~~~~~~~---~~l~ll~~~~~----~~e~~~~~sf~~~ 187 (650)
+|||||+|.|..|.+++++.+..+. .....++++.++|+.|.+....+ .++.+...++. ...+++.++|+..
T Consensus 387 ~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~ 466 (766)
T COG1204 387 AGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNP 466 (766)
T ss_pred cCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhh
Confidence 9999999999999999999555343 45566788888888887654431 11112122221 1355677777776
Q ss_pred Hhh
Q 006319 188 QAD 190 (650)
Q Consensus 188 ~~~ 190 (650)
|..
T Consensus 467 ~~~ 469 (766)
T COG1204 467 QTY 469 (766)
T ss_pred hhc
Confidence 643
No 12
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=4.4e-20 Score=208.50 Aligned_cols=123 Identities=37% Similarity=0.613 Sum_probs=108.8
Q ss_pred HhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhh
Q 006319 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMS 116 (650)
Q Consensus 37 ~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~ 116 (650)
..+.+++-||||+||+||....|.+||-+|++|.+.|||||+|++.|||||+++|||.+.+ .-+++-.|.||+
T Consensus 955 ~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs-------LQL~plny~Qma 1027 (1330)
T KOG0949|consen 955 FEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS-------LQLDPLNYKQMA 1027 (1330)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc-------cccCchhHHhhh
Confidence 3467889999999999999999999999999999999999999999999999999999753 367999999999
Q ss_pred ccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccChHHHHHHH
Q 006319 117 GRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQI 169 (650)
Q Consensus 117 GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~~~~~l~ll 169 (650)
|||||+|.|..|+|+++--+ ...+.+++......+..++..|-+.++.+-
T Consensus 1028 GRAGRRGFD~lGnV~FmgiP---~~kv~rLlts~L~diqG~~p~T~~~~l~l~ 1077 (1330)
T KOG0949|consen 1028 GRAGRRGFDTLGNVVFMGIP---RQKVQRLLTSLLPDIQGAYPYTNTSFLGLD 1077 (1330)
T ss_pred ccccccccccccceEEEeCc---HHHHHHHHHHhhhcccCCCcchhhHHHHHH
Confidence 99999999999999988443 466788888888888888888877777653
No 13
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.69 E-value=3.1e-17 Score=186.88 Aligned_cols=116 Identities=34% Similarity=0.561 Sum_probs=104.4
Q ss_pred HHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhcc
Q 006319 39 ILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGR 118 (650)
Q Consensus 39 l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GR 118 (650)
+...+.+|++|||+|++..+|+.||..|++|.+.|++||+|+++|+|+||+.||+.... + +...++..+|.||+||
T Consensus 517 l~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~-~---g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 517 LAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY-V---GREFLTRLEYKQMVGR 592 (1008)
T ss_pred HheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc-c---ccchhhhhhHHhhhhh
Confidence 67788999999999999999999999999999999999999999999999999998652 2 3356789999999999
Q ss_pred CCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccc
Q 006319 119 AGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFH 159 (650)
Q Consensus 119 AGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~ 159 (650)
|||.|.|+.|.+++++.+. +......++.+...|+.|.+.
T Consensus 593 AGR~gidT~GdsiLI~k~~-e~~~~~~lv~~~~~~~~S~l~ 632 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSS-EKKRVRELVNSPLKPLNSCLS 632 (1008)
T ss_pred hhhcccccCcceEEEeecc-chhHHHHHHhccccccccccc
Confidence 9999999999999999888 455566899999999999884
No 14
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.61 E-value=6.6e-16 Score=167.43 Aligned_cols=115 Identities=26% Similarity=0.457 Sum_probs=97.8
Q ss_pred HhHHHHhc-cC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHH
Q 006319 37 SNILPLLK-RG--IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYI 113 (650)
Q Consensus 37 ~~l~~~l~-~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~ 113 (650)
..|.+.|. +| .+.+|+||+...|..||.+|.++.+.++|+|.+++.|||+||..|||.++- .+..|+++.||.
T Consensus 454 h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLa----MG~~WLs~~EF~ 529 (830)
T COG1202 454 HELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLA----MGIEWLSVREFQ 529 (830)
T ss_pred HHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHH----cccccCCHHHHH
Confidence 34555554 34 579999999999999999999999999999999999999999999999874 366799999999
Q ss_pred hhhccCCCCCCCCceEEEEeecCCC---------cHHHHHHHhcCCCCccc
Q 006319 114 QMSGRAGRRGIDERGICILMVDDKM---------EPSTAKMMLKGSADSLN 155 (650)
Q Consensus 114 qm~GRAGR~g~d~~G~~ii~~~~~~---------~~~~~~~~~~~~~~pl~ 155 (650)
||.|||||++.+..|.+++++.+.. +.+.+-+++++.++|+.
T Consensus 530 QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~ 580 (830)
T COG1202 530 QMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVI 580 (830)
T ss_pred HHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcce
Confidence 9999999999999999999988752 34455667777776655
No 15
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=1.6e-13 Score=153.86 Aligned_cols=94 Identities=29% Similarity=0.397 Sum_probs=80.0
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...++.+||+|++.+|..+++.|++|.++|||||++++||||+|+.++||+ |+ .|.++.+|+||+|||||.|
T Consensus 250 g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~----~P~s~~~y~Qr~GRaGR~G 321 (470)
T TIGR00614 250 GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----YS----LPKSMESYYQESGRAGRDG 321 (470)
T ss_pred CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----eC----CCCCHHHHHhhhcCcCCCC
Confidence 346789999999999999999999999999999999999999999887777 33 3779999999999999999
Q ss_pred CCCceEEEEeecCCCcHHHHHHHhc
Q 006319 124 IDERGICILMVDDKMEPSTAKMMLK 148 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~~~~~~~~~ 148 (650)
..|.++++..+. +...+..++.
T Consensus 322 --~~~~~~~~~~~~-d~~~~~~~~~ 343 (470)
T TIGR00614 322 --LPSECHLFYAPA-DINRLRRLLM 343 (470)
T ss_pred --CCceEEEEechh-HHHHHHHHHh
Confidence 567888877665 4555666654
No 16
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.45 E-value=2.1e-13 Score=161.14 Aligned_cols=103 Identities=25% Similarity=0.375 Sum_probs=84.9
Q ss_pred hHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHh
Q 006319 35 QVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQ 114 (650)
Q Consensus 35 ~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~q 114 (650)
.+..........+++|||||++.+|..+++.|.+|.++|||||.+|+||||+|+.++||+ |+ .|.++..|.|
T Consensus 695 ~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH----yd----lPkSiEsYyQ 766 (1195)
T PLN03137 695 KVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HS----LPKSIEGYHQ 766 (1195)
T ss_pred HHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE----cC----CCCCHHHHHh
Confidence 333333334456899999999999999999999999999999999999999999888887 33 4789999999
Q ss_pred hhccCCCCCCCCceEEEEeecCCCcHHHHHHHhc
Q 006319 115 MSGRAGRRGIDERGICILMVDDKMEPSTAKMMLK 148 (650)
Q Consensus 115 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~ 148 (650)
++|||||.| ..|.|+++.... +...+..++.
T Consensus 767 riGRAGRDG--~~g~cILlys~~-D~~~~~~lI~ 797 (1195)
T PLN03137 767 ECGRAGRDG--QRSSCVLYYSYS-DYIRVKHMIS 797 (1195)
T ss_pred hhcccCCCC--CCceEEEEecHH-HHHHHHHHHh
Confidence 999999999 678898887654 4455566664
No 17
>PTZ00424 helicase 45; Provisional
Probab=99.43 E-value=2.5e-13 Score=148.85 Aligned_cols=85 Identities=24% Similarity=0.410 Sum_probs=76.1
Q ss_pred hccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCC
Q 006319 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRR 122 (650)
Q Consensus 43 l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~ 122 (650)
...+++.+||+|++.+|..+++.|++|.++|||||+++++|||+|..++||. || .|.+..+|+||+|||||.
T Consensus 290 ~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~----~p~s~~~y~qr~GRagR~ 361 (401)
T PTZ00424 290 RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YD----LPASPENYIHRIGRSGRF 361 (401)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----EC----CCCCHHHEeecccccccC
Confidence 3457999999999999999999999999999999999999999999888886 33 377899999999999999
Q ss_pred CCCCceEEEEeecCC
Q 006319 123 GIDERGICILMVDDK 137 (650)
Q Consensus 123 g~d~~G~~ii~~~~~ 137 (650)
| ..|.+++++.+.
T Consensus 362 g--~~G~~i~l~~~~ 374 (401)
T PTZ00424 362 G--RKGVAINFVTPD 374 (401)
T ss_pred C--CCceEEEEEcHH
Confidence 8 578888888765
No 18
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.42 E-value=6e-13 Score=111.72 Aligned_cols=76 Identities=32% Similarity=0.447 Sum_probs=67.9
Q ss_pred HHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccC
Q 006319 40 LPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRA 119 (650)
Q Consensus 40 ~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRA 119 (650)
.+.....++.+||++++..|..+.+.|++|..+|||||..+++|||+|..++||. |+ .+.++.+|.|++||+
T Consensus 3 L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~----~~~~~~~~~Q~~GR~ 74 (78)
T PF00271_consen 3 LEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YD----PPWSPEEYIQRIGRA 74 (78)
T ss_dssp HHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SS----SESSHHHHHHHHTTS
T ss_pred hHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----cc----cCCCHHHHHHHhhcC
Confidence 3456778999999999999999999999999999999999999999999776666 22 278999999999999
Q ss_pred CCCC
Q 006319 120 GRRG 123 (650)
Q Consensus 120 GR~g 123 (650)
||.|
T Consensus 75 ~R~g 78 (78)
T PF00271_consen 75 GRIG 78 (78)
T ss_dssp STTT
T ss_pred CCCC
Confidence 9987
No 19
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.42 E-value=5.2e-13 Score=151.45 Aligned_cols=84 Identities=25% Similarity=0.300 Sum_probs=74.6
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|..+.||+ || .|.++.+|+||+|||||.|
T Consensus 392 g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d----~P~s~~~yihRiGRaGR~g 463 (518)
T PLN00206 392 GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FD----MPNTIKEYIHQIGRASRMG 463 (518)
T ss_pred CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eC----CCCCHHHHHHhccccccCC
Confidence 345788999999999999999999999999999999999999999877776 44 3789999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.++++..+.
T Consensus 464 --~~G~ai~f~~~~ 475 (518)
T PLN00206 464 --EKGTAIVFVNEE 475 (518)
T ss_pred --CCeEEEEEEchh
Confidence 578888887654
No 20
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.42 E-value=7.3e-13 Score=162.22 Aligned_cols=125 Identities=16% Similarity=0.274 Sum_probs=93.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCC
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDE 126 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~ 126 (650)
+.+|||+|++++|..||+.|++|.+++||||+++++|||||+..+||. |+ .|.++.+|+||+|||||. .+.
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~g----sP~sVas~LQRiGRAGR~-~gg 374 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VA----TPLSVASGLQRIGRAGHQ-VGG 374 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eC----CCCCHHHHHHHhCCCCCC-CCC
Confidence 679999999999999999999999999999999999999999777776 22 388999999999999998 456
Q ss_pred ceEEEEeecCCCcH----HHHHHHhcCCCCccccccccC---hHHHHHHHHhcCCChHHHH
Q 006319 127 RGICILMVDDKMEP----STAKMMLKGSADSLNSAFHLS---YNMLLNQIRCEEGSPENLL 180 (650)
Q Consensus 127 ~G~~ii~~~~~~~~----~~~~~~~~~~~~pl~S~~~~~---~~~~l~ll~~~~~~~e~~~ 180 (650)
.+.+++++.+..+. ..+..++.|..+++...-..- ...++.+....+.++++++
T Consensus 375 ~s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~~~d~l~ 435 (1490)
T PRK09751 375 VSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVDEWY 435 (1490)
T ss_pred ccEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCCCHHHHH
Confidence 77778776664321 135678888887765443221 2233334444556665543
No 21
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.40 E-value=6.5e-13 Score=153.32 Aligned_cols=93 Identities=27% Similarity=0.362 Sum_probs=79.6
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
..++.+||||++.+|..+++.|++|.++|||||++++||||+|..++||+ || .|.+...|+||+|||||.|
T Consensus 261 ~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d----~P~s~~~y~Qr~GRaGR~G- 331 (607)
T PRK11057 261 ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FD----IPRNIESYYQETGRAGRDG- 331 (607)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE----eC----CCCCHHHHHHHhhhccCCC-
Confidence 45789999999999999999999999999999999999999999888887 44 3789999999999999999
Q ss_pred CCceEEEEeecCCCcHHHHHHHhc
Q 006319 125 DERGICILMVDDKMEPSTAKMMLK 148 (650)
Q Consensus 125 d~~G~~ii~~~~~~~~~~~~~~~~ 148 (650)
..|.++++.++. +...+..++.
T Consensus 332 -~~~~~ill~~~~-d~~~~~~~~~ 353 (607)
T PRK11057 332 -LPAEAMLFYDPA-DMAWLRRCLE 353 (607)
T ss_pred -CCceEEEEeCHH-HHHHHHHHHh
Confidence 567788877765 4445555553
No 22
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.40 E-value=1.3e-12 Score=156.33 Aligned_cols=104 Identities=23% Similarity=0.324 Sum_probs=81.0
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC-
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG- 123 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g- 123 (650)
.+|++|||+|++.+|..+++.|++|.++|||||+++++|||+|+.++||. |+ .|.++.+|+||+|||||++
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~----~P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LG----SPKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eC----CCCCHHHHHHhcccCCCCCC
Confidence 58999999999999999999999999999999999999999999877776 32 3779999999999999974
Q ss_pred CCCceEEEEeecCCCcH--HHHHHHhcCCCCcccc
Q 006319 124 IDERGICILMVDDKMEP--STAKMMLKGSADSLNS 156 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~--~~~~~~~~~~~~pl~S 156 (650)
....|.++......... ...+.+..|..+++..
T Consensus 387 ~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~ 421 (876)
T PRK13767 387 EVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHI 421 (876)
T ss_pred CCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCC
Confidence 33567666543222111 1344566676666544
No 23
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.39 E-value=1.3e-12 Score=153.64 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=73.8
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..+|+.|||||++.+|+.+++.|++|.+++||||+++++|||+|..++||+ |+ .|.+...|+||+|||||.|
T Consensus 303 ~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~----~P~s~~~y~qRiGRaGR~G 374 (742)
T TIGR03817 303 AERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI----AG----FPGTRASLWQQAGRAGRRG 374 (742)
T ss_pred ccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eC----CCCCHHHHHHhccccCCCC
Confidence 357889999999999999999999999999999999999999999776666 22 3789999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 375 --~~g~ai~v~~~~ 386 (742)
T TIGR03817 375 --QGALVVLVARDD 386 (742)
T ss_pred --CCcEEEEEeCCC
Confidence 568888887654
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.36 E-value=1.3e-12 Score=144.65 Aligned_cols=84 Identities=27% Similarity=0.403 Sum_probs=75.0
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...++++||+|++.+|..+++.|++|.++|||||+++++|||+|..++||+ || .|.++.+|+||+|||||.|
T Consensus 279 g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d----~P~s~~~yiqR~GR~gR~G 350 (423)
T PRK04837 279 GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YD----LPDDCEDYVHRIGRTGRAG 350 (423)
T ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eC----CCCchhheEeccccccCCC
Confidence 456899999999999999999999999999999999999999999888887 44 3789999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.++.+..+.
T Consensus 351 --~~G~ai~~~~~~ 362 (423)
T PRK04837 351 --ASGHSISLACEE 362 (423)
T ss_pred --CCeeEEEEeCHH
Confidence 567787776654
No 25
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.36 E-value=2e-12 Score=149.02 Aligned_cols=92 Identities=25% Similarity=0.307 Sum_probs=77.3
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
..++.|||||++.+|+.+++.|.+|.++|||||++++||||+|+.+.||+ |+ .|-+...|.||+|||||.|
T Consensus 249 ~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~----~p~s~~~y~Q~~GRaGR~G- 319 (591)
T TIGR01389 249 ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YD----MPGNLESYYQEAGRAGRDG- 319 (591)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----cC----CCCCHHHHhhhhccccCCC-
Confidence 34689999999999999999999999999999999999999999777776 33 3778999999999999999
Q ss_pred CCceEEEEeecCCCcHHHHHHHh
Q 006319 125 DERGICILMVDDKMEPSTAKMML 147 (650)
Q Consensus 125 d~~G~~ii~~~~~~~~~~~~~~~ 147 (650)
..|.++++++.. +...++.++
T Consensus 320 -~~~~~il~~~~~-d~~~~~~~i 340 (591)
T TIGR01389 320 -LPAEAILLYSPA-DIALLKRRI 340 (591)
T ss_pred -CCceEEEecCHH-HHHHHHHHH
Confidence 566777776655 445555555
No 26
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.35 E-value=2.5e-12 Score=143.80 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=72.2
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
..+..+||+|++.+|..++..|++|.++|||||+++++|||+|+.++||+ || .|.++.+|+||+|||||.|
T Consensus 270 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~----~P~~~~~yvqR~GRaGR~g- 340 (456)
T PRK10590 270 IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YE----LPNVPEDYVHRIGRTGRAA- 340 (456)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eC----CCCCHHHhhhhccccccCC-
Confidence 45689999999999999999999999999999999999999999888887 44 3778999999999999999
Q ss_pred CCceEEEEeecCC
Q 006319 125 DERGICILMVDDK 137 (650)
Q Consensus 125 d~~G~~ii~~~~~ 137 (650)
..|.++.++...
T Consensus 341 -~~G~ai~l~~~~ 352 (456)
T PRK10590 341 -ATGEALSLVCVD 352 (456)
T ss_pred -CCeeEEEEecHH
Confidence 456666555443
No 27
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.34 E-value=2.8e-12 Score=143.53 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=74.8
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...+..+||+|++.+|+.++..|++|.++|||||+.+++|+|+|+.++||. || .|.++..|+||+|||||.|
T Consensus 266 ~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d----~p~~~~~yiqR~GRtGR~g 337 (460)
T PRK11776 266 GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN----YE----LARDPEVHVHRIGRTGRAG 337 (460)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE----ec----CCCCHhHhhhhcccccCCC
Confidence 457889999999999999999999999999999999999999999888887 33 3778999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.++.++.+.
T Consensus 338 --~~G~ai~l~~~~ 349 (460)
T PRK11776 338 --SKGLALSLVAPE 349 (460)
T ss_pred --CcceEEEEEchh
Confidence 568888777665
No 28
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.33 E-value=7e-12 Score=136.32 Aligned_cols=123 Identities=20% Similarity=0.321 Sum_probs=103.5
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHc--CCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQE--GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGR 121 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~--g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR 121 (650)
...+++.+|+|+|+.|..--.+|.+ +..+|||||++.+||+|+..++|||.+..||+|++..+++.++..|++|||||
T Consensus 381 ~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGR 460 (700)
T KOG0953|consen 381 NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGR 460 (700)
T ss_pred CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccc
Confidence 3458999999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CceEEEEeecCCCcHHHHHHHhcCCCCcccc-ccccChHHHHHH
Q 006319 122 RGID-ERGICILMVDDKMEPSTAKMMLKGSADSLNS-AFHLSYNMLLNQ 168 (650)
Q Consensus 122 ~g~d-~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S-~~~~~~~~~l~l 168 (650)
.|.. ..|.+..+ ...+...+++.++..++|+.. .+|+++..+-.+
T Consensus 461 f~s~~~~G~vTtl--~~eDL~~L~~~l~~p~epi~~agl~pt~eqie~f 507 (700)
T KOG0953|consen 461 FGSKYPQGEVTTL--HSEDLKLLKRILKRPVEPIKNAGLWPTDEQIELF 507 (700)
T ss_pred cccCCcCceEEEe--eHhhHHHHHHHHhCCchHHHhccCCccHHHHHHH
Confidence 9753 35655544 333577888888877777753 567776654443
No 29
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.32 E-value=4.9e-12 Score=140.45 Aligned_cols=90 Identities=21% Similarity=0.351 Sum_probs=75.8
Q ss_pred HhHHHHhc---cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHH
Q 006319 37 SNILPLLK---RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYI 113 (650)
Q Consensus 37 ~~l~~~l~---~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~ 113 (650)
..+.+.|. ..++++||+|++.+|..+...|++|.++|||||+.+++|||+|..++||+ || .|.++..|+
T Consensus 259 ~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d----~p~s~~~yi 330 (434)
T PRK11192 259 HELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FD----MPRSADTYL 330 (434)
T ss_pred HHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----EC----CCCCHHHHh
Confidence 34444443 45789999999999999999999999999999999999999999888887 44 378999999
Q ss_pred hhhccCCCCCCCCceEEEEeecC
Q 006319 114 QMSGRAGRRGIDERGICILMVDD 136 (650)
Q Consensus 114 qm~GRAGR~g~d~~G~~ii~~~~ 136 (650)
||+|||||.| ..|.++++...
T Consensus 331 qr~GR~gR~g--~~g~ai~l~~~ 351 (434)
T PRK11192 331 HRIGRTGRAG--RKGTAISLVEA 351 (434)
T ss_pred hcccccccCC--CCceEEEEecH
Confidence 9999999999 45666666544
No 30
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.31 E-value=6.9e-12 Score=140.85 Aligned_cols=106 Identities=26% Similarity=0.382 Sum_probs=85.6
Q ss_pred CchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhH
Q 006319 32 KLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGE 111 (650)
Q Consensus 32 ~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e 111 (650)
.+..+......-...++++||||+..+|+.+++.|..+.++|+|||.+|+||||-|....||+ || .|-++..
T Consensus 242 ~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~----lP~s~Es 313 (590)
T COG0514 242 KVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YD----LPGSIES 313 (590)
T ss_pred hHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE----ec----CCCCHHH
Confidence 344444443333456799999999999999999999999999999999999999999887777 32 5889999
Q ss_pred HHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhc
Q 006319 112 YIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLK 148 (650)
Q Consensus 112 ~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~ 148 (650)
|.|-+|||||.| ....++++..+. +......++.
T Consensus 314 YyQE~GRAGRDG--~~a~aill~~~~-D~~~~~~~i~ 347 (590)
T COG0514 314 YYQETGRAGRDG--LPAEAILLYSPE-DIRWQRYLIE 347 (590)
T ss_pred HHHHHhhccCCC--CcceEEEeeccc-cHHHHHHHHH
Confidence 999999999999 678888887766 4444444543
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.30 E-value=9e-12 Score=139.98 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=73.7
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...+..+||+|++.+|..++..|++|.++|||||+++++|||+|..++||+ |+ .|.+..+|+||+|||||.|
T Consensus 359 ~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~----~P~s~~~y~Qr~GRaGR~g 430 (475)
T PRK01297 359 GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FT----LPEDPDDYVHRIGRTGRAG 430 (475)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eC----CCCCHHHHHHhhCccCCCC
Confidence 346789999999999999999999999999999999999999999888887 33 3789999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.++++..+.
T Consensus 431 --~~g~~i~~~~~~ 442 (475)
T PRK01297 431 --ASGVSISFAGED 442 (475)
T ss_pred --CCceEEEEecHH
Confidence 457777776654
No 32
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.2e-11 Score=124.95 Aligned_cols=98 Identities=20% Similarity=0.354 Sum_probs=85.1
Q ss_pred CCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCH
Q 006319 30 DKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISS 109 (650)
Q Consensus 30 d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~ 109 (650)
-+++.++..-..-..+.|...||.|++++|+.+.+.|++|.-+||++|+.+|+|+|+|..+.||+ || .|...
T Consensus 276 k~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YD----LP~nr 347 (400)
T KOG0328|consen 276 KRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YD----LPNNR 347 (400)
T ss_pred cchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cC----CCccH
Confidence 44555665554555678999999999999999999999999999999999999999999999998 55 47778
Q ss_pred hHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 110 GEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 110 ~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
..|+||+||+||.| ..|.++-+..+.
T Consensus 348 e~YIHRIGRSGRFG--RkGvainFVk~~ 373 (400)
T KOG0328|consen 348 ELYIHRIGRSGRFG--RKGVAINFVKSD 373 (400)
T ss_pred HHHhhhhccccccC--CcceEEEEecHH
Confidence 99999999999999 889998887765
No 33
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.28 E-value=1e-11 Score=142.30 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=74.5
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...++.+||+|++.+|+.+++.|++|.++|||||+++++|||+|..++||+ || .|.++.+|+||+|||||.|
T Consensus 281 g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd----~P~s~~~yvqRiGRaGR~G 352 (572)
T PRK04537 281 GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YD----LPFDAEDYVHRIGRTARLG 352 (572)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cC----CCCCHHHHhhhhcccccCC
Confidence 456899999999999999999999999999999999999999999888887 44 3789999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.++.++.+.
T Consensus 353 --~~G~ai~~~~~~ 364 (572)
T PRK04537 353 --EEGDAISFACER 364 (572)
T ss_pred --CCceEEEEecHH
Confidence 467777776554
No 34
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.28 E-value=1.5e-11 Score=102.64 Aligned_cols=73 Identities=37% Similarity=0.478 Sum_probs=65.6
Q ss_pred HhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCC-CceEEEeccccccCCCccccCHhHHHhhhccCC
Q 006319 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMP-AKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120 (650)
Q Consensus 42 ~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~p-a~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAG 120 (650)
....++..+||+|++.+|..+...|++|..+||++|++++.|+|+| +..||+.+. +.+..+|.||+||+|
T Consensus 9 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~---------~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 9 ELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL---------PWSPASYIQRIGRAG 79 (82)
T ss_pred HCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC---------CCCHHHHHHhhcccc
Confidence 3366789999999999999999999999999999999999999999 566676654 689999999999999
Q ss_pred CCC
Q 006319 121 RRG 123 (650)
Q Consensus 121 R~g 123 (650)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 986
No 35
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=8.2e-12 Score=141.32 Aligned_cols=93 Identities=25% Similarity=0.409 Sum_probs=80.6
Q ss_pred hccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCC
Q 006319 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRR 122 (650)
Q Consensus 43 l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~ 122 (650)
..+.++..||+|++..|..+...|++|.++|||||+.+|+|||+|..+.||+ ||. |.++.+|+||+||+||.
T Consensus 296 ~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~----p~~~e~yvHRiGRTgRa 367 (513)
T COG0513 296 RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDL----PLDPEDYVHRIGRTGRA 367 (513)
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccC----CCCHHHheeccCccccC
Confidence 3345899999999999999999999999999999999999999999998988 665 88999999999999999
Q ss_pred CCCCceEEEEeecCCCcHHHHHH
Q 006319 123 GIDERGICILMVDDKMEPSTAKM 145 (650)
Q Consensus 123 g~d~~G~~ii~~~~~~~~~~~~~ 145 (650)
| ..|.++.++.+..+...+..
T Consensus 368 G--~~G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 368 G--RKGVAISFVTEEEEVKKLKR 388 (513)
T ss_pred C--CCCeEEEEeCcHHHHHHHHH
Confidence 9 78888888876423344433
No 36
>PTZ00110 helicase; Provisional
Probab=99.28 E-value=1.2e-11 Score=141.12 Aligned_cols=83 Identities=22% Similarity=0.256 Sum_probs=74.2
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
..+..+||+|++.+|+.+...|++|.++|||||+.+++|||+|..++||+ || .|-++.+|+||+|||||.|
T Consensus 402 ~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d----~P~s~~~yvqRiGRtGR~G- 472 (545)
T PTZ00110 402 WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FD----FPNQIEDYVHRIGRTGRAG- 472 (545)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eC----CCCCHHHHHHHhcccccCC-
Confidence 35678999999999999999999999999999999999999999888887 44 3778999999999999999
Q ss_pred CCceEEEEeecCC
Q 006319 125 DERGICILMVDDK 137 (650)
Q Consensus 125 d~~G~~ii~~~~~ 137 (650)
..|.++.+..+.
T Consensus 473 -~~G~ai~~~~~~ 484 (545)
T PTZ00110 473 -AKGASYTFLTPD 484 (545)
T ss_pred -CCceEEEEECcc
Confidence 578888777665
No 37
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.27 E-value=1.2e-11 Score=143.33 Aligned_cols=85 Identities=27% Similarity=0.473 Sum_probs=73.6
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...|+.+||+|++.+|+.+++.|++|.++|||||+++++|||+|..++||. |+. ..+..+.|+||+|||||.|
T Consensus 482 ~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~---~r~gls~lhQ~~GRvGR~g 554 (630)
T TIGR00643 482 KYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDA---ERFGLSQLHQLRGRVGRGD 554 (630)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCC---CcCCHHHHHHHhhhcccCC
Confidence 346899999999999999999999999999999999999999999887775 322 1246789999999999998
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.|++++.++
T Consensus 555 --~~g~~il~~~~~ 566 (630)
T TIGR00643 555 --HQSYCLLVYKNP 566 (630)
T ss_pred --CCcEEEEEECCC
Confidence 689999998544
No 38
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.25 E-value=9e-12 Score=127.56 Aligned_cols=109 Identities=21% Similarity=0.272 Sum_probs=87.4
Q ss_pred hccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCC
Q 006319 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRR 122 (650)
Q Consensus 43 l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~ 122 (650)
+.+..-|.|+.|.++.|..|...|++|.++.||||+.|.+|||++|.+|||+ ||- |-+++.|+|++||+||.
T Consensus 345 lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDf----pk~aEtYLHRIGRsGRF 416 (459)
T KOG0326|consen 345 LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDF----PKNAETYLHRIGRSGRF 416 (459)
T ss_pred ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe----cCC----CCCHHHHHHHccCCccC
Confidence 4455568899999999999999999999999999999999999999999998 663 67899999999999999
Q ss_pred CCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccc
Q 006319 123 GIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFH 159 (650)
Q Consensus 123 g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~ 159 (650)
|.-+.+..++.+++......+++-+-.+..|+.|.+.
T Consensus 417 GhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 417 GHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred CCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 9544444455555554444555556566677776543
No 39
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.25 E-value=2.5e-11 Score=141.91 Aligned_cols=84 Identities=26% Similarity=0.505 Sum_probs=73.4
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
..|+++||+|++.+|+.++..|++|.++|||||+.+++|||+|..++||. |+. ..+..+.|.||+||+||.|
T Consensus 506 ~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~---~r~gls~lhQ~~GRvGR~g- 577 (681)
T PRK10917 506 LRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENA---ERFGLAQLHQLRGRVGRGA- 577 (681)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCC---CCCCHHHHHHHhhcccCCC-
Confidence 57999999999999999999999999999999999999999999777776 222 1245789999999999998
Q ss_pred CCceEEEEeecCC
Q 006319 125 DERGICILMVDDK 137 (650)
Q Consensus 125 d~~G~~ii~~~~~ 137 (650)
..|.|++++.+.
T Consensus 578 -~~g~~ill~~~~ 589 (681)
T PRK10917 578 -AQSYCVLLYKDP 589 (681)
T ss_pred -CceEEEEEECCC
Confidence 689999998643
No 40
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.23 E-value=3.6e-11 Score=125.52 Aligned_cols=97 Identities=27% Similarity=0.368 Sum_probs=83.3
Q ss_pred HhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecc--ccccCCCccccCHhHHHhhhccC
Q 006319 42 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV--RKFDGDKFRWISSGEYIQMSGRA 119 (650)
Q Consensus 42 ~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~--~k~dg~~~~~~~~~e~~qm~GRA 119 (650)
.-.+.|...||.|.-.+|..+...|++|.-+|||+|..+|+|||++..+||++.. .+|+| .-+...|+||+||+
T Consensus 352 ~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~----~pD~etYlHRiGRt 427 (477)
T KOG0332|consen 352 AEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTG----EPDYETYLHRIGRT 427 (477)
T ss_pred hcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCC----CCCHHHHHHHhccc
Confidence 3456699999999999999999999999999999999999999999999999842 24444 25789999999999
Q ss_pred CCCCCCCceEEEEeecCCCcHHHHH
Q 006319 120 GRRGIDERGICILMVDDKMEPSTAK 144 (650)
Q Consensus 120 GR~g~d~~G~~ii~~~~~~~~~~~~ 144 (650)
||.| ..|.++-+.+++.....+.
T Consensus 428 GRFG--kkG~a~n~v~~~~s~~~mn 450 (477)
T KOG0332|consen 428 GRFG--KKGLAINLVDDKDSMNIMN 450 (477)
T ss_pred cccc--ccceEEEeecccCcHHHHH
Confidence 9999 7899998988886655443
No 41
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.22 E-value=4.2e-11 Score=138.38 Aligned_cols=83 Identities=24% Similarity=0.425 Sum_probs=75.2
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
..+..+||+|++.+|+.+.+.|++|.++|||||+.+++|||+|..++||+ || .|.++..|+||+|||||.|
T Consensus 270 ~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d----~P~~~e~yvqRiGRtGRaG- 340 (629)
T PRK11634 270 YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YD----IPMDSESYVHRIGRTGRAG- 340 (629)
T ss_pred CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eC----CCCCHHHHHHHhccccCCC-
Confidence 46789999999999999999999999999999999999999999888887 44 3789999999999999999
Q ss_pred CCceEEEEeecCC
Q 006319 125 DERGICILMVDDK 137 (650)
Q Consensus 125 d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 341 -r~G~ai~~v~~~ 352 (629)
T PRK11634 341 -RAGRALLFVENR 352 (629)
T ss_pred -CcceEEEEechH
Confidence 678888888765
No 42
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.18 E-value=9.3e-11 Score=106.91 Aligned_cols=86 Identities=30% Similarity=0.438 Sum_probs=72.8
Q ss_pred HhHHHHh---ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC-ceEEEeccccccCCCccccCHhHH
Q 006319 37 SNILPLL---KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA-KTVVFTNVRKFDGDKFRWISSGEY 112 (650)
Q Consensus 37 ~~l~~~l---~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa-~~VVi~~~~k~dg~~~~~~~~~e~ 112 (650)
..+.+.+ ..++.++||++++.+|..+...|++|..++|++|..+++|+|+|. ..||+.+. +.+..+|
T Consensus 42 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~---------~~~~~~~ 112 (131)
T cd00079 42 DELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDL---------PWSPSSY 112 (131)
T ss_pred HHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCC---------CCCHHHh
Confidence 3444444 568999999999999999999999999999999999999999995 55666544 6789999
Q ss_pred HhhhccCCCCCCCCceEEEEe
Q 006319 113 IQMSGRAGRRGIDERGICILM 133 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~ 133 (650)
.|++||+||.|. .|.++++
T Consensus 113 ~Q~~GR~~R~~~--~~~~~~~ 131 (131)
T cd00079 113 LQRIGRAGRAGQ--KGTAILL 131 (131)
T ss_pred eecccccccCCC--CceEEeC
Confidence 999999999994 7777653
No 43
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.17 E-value=6.3e-11 Score=131.03 Aligned_cols=83 Identities=24% Similarity=0.346 Sum_probs=74.7
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
++....||..++.+|+.+.+.|++|...|||||+..|+|+|+|...+||+ ||. |-++++|+||+||+||.|
T Consensus 366 ~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydf----P~~vEdYVHRiGRTGRa~- 436 (519)
T KOG0331|consen 366 WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDF----PNNVEDYVHRIGRTGRAG- 436 (519)
T ss_pred cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCC----CCCHHHHHhhcCccccCC-
Confidence 46789999999999999999999999999999999999999999999998 553 889999999999999988
Q ss_pred CCceEEEEeecCC
Q 006319 125 DERGICILMVDDK 137 (650)
Q Consensus 125 d~~G~~ii~~~~~ 137 (650)
..|.++.+....
T Consensus 437 -~~G~A~tfft~~ 448 (519)
T KOG0331|consen 437 -KKGTAITFFTSD 448 (519)
T ss_pred -CCceEEEEEeHH
Confidence 677777766554
No 44
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.14 E-value=1.2e-10 Score=126.12 Aligned_cols=96 Identities=25% Similarity=0.339 Sum_probs=81.0
Q ss_pred CchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhH
Q 006319 32 KLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGE 111 (650)
Q Consensus 32 ~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e 111 (650)
.+..+....+.+.+.+..+|||-+++.|+.....|++|...|||||+..++|||+|.++.||+ ||- .-+..+
T Consensus 529 ~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydm----aksieD 600 (673)
T KOG0333|consen 529 GADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDM----AKSIED 600 (673)
T ss_pred hHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee----cch----hhhHHH
Confidence 344555555666677889999999999999999999999999999999999999999999998 442 457999
Q ss_pred HHhhhccCCCCCCCCceEEEEeecCC
Q 006319 112 YIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 112 ~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
|+|++||+||.| ..|.++.+..+.
T Consensus 601 YtHRIGRTgRAG--k~GtaiSflt~~ 624 (673)
T KOG0333|consen 601 YTHRIGRTGRAG--KSGTAISFLTPA 624 (673)
T ss_pred HHHHhccccccc--cCceeEEEeccc
Confidence 999999999999 567776666555
No 45
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.11 E-value=2e-10 Score=120.73 Aligned_cols=95 Identities=24% Similarity=0.273 Sum_probs=80.6
Q ss_pred HHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCC
Q 006319 41 PLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120 (650)
Q Consensus 41 ~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAG 120 (650)
..+....-..||.|++..|.-..+.|++|...||+||+..++|+|+|...|||+ || .|.+..+|+||+||.|
T Consensus 321 ~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yD----iP~~skDYIHRvGRta 392 (476)
T KOG0330|consen 321 RNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YD----IPTHSKDYIHRVGRTA 392 (476)
T ss_pred HhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe----cC----CCCcHHHHHHHccccc
Confidence 334444456799999999999999999999999999999999999999999998 66 4889999999999999
Q ss_pred CCCCCCceEEEEeecCCCcHHHHHHH
Q 006319 121 RRGIDERGICILMVDDKMEPSTAKMM 146 (650)
Q Consensus 121 R~g~d~~G~~ii~~~~~~~~~~~~~~ 146 (650)
|.| ..|.+|-++.. .+.+.+.++
T Consensus 393 RaG--rsG~~ItlVtq-yDve~~qrI 415 (476)
T KOG0330|consen 393 RAG--RSGKAITLVTQ-YDVELVQRI 415 (476)
T ss_pred ccC--CCcceEEEEeh-hhhHHHHHH
Confidence 999 78888888777 455555443
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.09 E-value=3.7e-10 Score=134.81 Aligned_cols=83 Identities=18% Similarity=0.347 Sum_probs=71.9
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEe-ccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFT-NVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~-~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..|+.+||+|++.+|+.++..|++|.++|||||+.+++|||+|..++||. +.. ..+.++|.||+||+||.|
T Consensus 687 ~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~--------~~gls~l~Qr~GRvGR~g 758 (926)
T TIGR00580 687 ARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERAD--------KFGLAQLYQLRGRVGRSK 758 (926)
T ss_pred CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCC--------CCCHHHHHHHhcCCCCCC
Confidence 46899999999999999999999999999999999999999998665554 321 246778999999999998
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.|++++.+.
T Consensus 759 --~~g~aill~~~~ 770 (926)
T TIGR00580 759 --KKAYAYLLYPHQ 770 (926)
T ss_pred --CCeEEEEEECCc
Confidence 689999998654
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.08 E-value=4e-10 Score=137.25 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=72.7
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEe-ccccccCCCccccCHhHHHhhhccCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFT-NVRKFDGDKFRWISSGEYIQMSGRAGRR 122 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~-~~~k~dg~~~~~~~~~e~~qm~GRAGR~ 122 (650)
..+|+.+||+|++.+|+.+...|++|.++|||||+.+++|||+|..++||. ... .++..+|+|++||+||.
T Consensus 835 ~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad--------~fglaq~~Qr~GRvGR~ 906 (1147)
T PRK10689 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD--------HFGLAQLHQLRGRVGRS 906 (1147)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC--------CCCHHHHHHHhhccCCC
Confidence 357999999999999999999999999999999999999999998666654 221 35678899999999999
Q ss_pred CCCCceEEEEeecCC
Q 006319 123 GIDERGICILMVDDK 137 (650)
Q Consensus 123 g~d~~G~~ii~~~~~ 137 (650)
| ..|.|++++.+.
T Consensus 907 g--~~g~a~ll~~~~ 919 (1147)
T PRK10689 907 H--HQAYAWLLTPHP 919 (1147)
T ss_pred C--CceEEEEEeCCC
Confidence 8 789999988654
No 48
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.04 E-value=5.8e-10 Score=117.55 Aligned_cols=116 Identities=30% Similarity=0.377 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCccCCCchhHHh--HH-----HHhccCEE--EEcCCCCHHHHHHHHHHHHcCCCcEEEe
Q 006319 6 LTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSN--IL-----PLLKRGIG--VHHSGLLPILKEVIEILFQEGLIKCLFA 76 (650)
Q Consensus 6 ~~~~~e~~~i~~~~~~~i~~l~~~d~~~~~~~~--l~-----~~l~~GIg--~hH~gl~~~~R~~ve~lF~~g~i~vLva 76 (650)
.++++||-.+- +..++.++..|+-+-++.. +. ++...||. ..||+-.+.+|+.....|++|.++||||
T Consensus 445 v~~d~~k~~~~---~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILva 521 (629)
T KOG0336|consen 445 VTTDSEKLEIV---QFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVA 521 (629)
T ss_pred ecccHHHHHHH---HHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEE
Confidence 46777776444 4444457888887665432 22 22334663 6899999999999999999999999999
Q ss_pred chhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEE
Q 006319 77 TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICIL 132 (650)
Q Consensus 77 T~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii 132 (650)
|+..++|+|+|..+.|++ ||- |.+..+|.|++||.||.|..+.+..++
T Consensus 522 TDlaSRGlDv~DiTHV~N----yDF----P~nIeeYVHRvGrtGRaGr~G~sis~l 569 (629)
T KOG0336|consen 522 TDLASRGLDVPDITHVYN----YDF----PRNIEEYVHRVGRTGRAGRTGTSISFL 569 (629)
T ss_pred echhhcCCCchhcceeec----cCC----CccHHHHHHHhcccccCCCCcceEEEE
Confidence 999999999999999988 553 889999999999999999444444443
No 49
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=7.6e-10 Score=115.18 Aligned_cols=93 Identities=26% Similarity=0.332 Sum_probs=79.3
Q ss_pred hhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHH
Q 006319 34 PQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYI 113 (650)
Q Consensus 34 ~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~ 113 (650)
.-+..+.+.|...++..|+-|++.+|-.....|+++.+++|+||+..++|+|+|....|++ || .|-+|.+|+
T Consensus 268 Q~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN----~d----iPr~P~~yi 339 (442)
T KOG0340|consen 268 QLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN----HD----IPRDPKDYI 339 (442)
T ss_pred HHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe----cC----CCCCHHHHH
Confidence 3456666777888999999999999999999999999999999999999999999998888 33 588999999
Q ss_pred hhhccCCCCCCCCceEEEEeecC
Q 006319 114 QMSGRAGRRGIDERGICILMVDD 136 (650)
Q Consensus 114 qm~GRAGR~g~d~~G~~ii~~~~ 136 (650)
||+||+.|.| ..|.++-+..+
T Consensus 340 HRvGRtARAG--R~G~aiSivt~ 360 (442)
T KOG0340|consen 340 HRVGRTARAG--RKGMAISIVTQ 360 (442)
T ss_pred Hhhcchhccc--CCcceEEEech
Confidence 9999999988 45555544443
No 50
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.00 E-value=6e-10 Score=120.21 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=80.3
Q ss_pred HHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhh
Q 006319 36 VSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQM 115 (650)
Q Consensus 36 ~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm 115 (650)
...|...+...|-..||++++..|..+...|++..--||+||+..|+|+|+|+.+.|+. ||+ |-++.+|+||
T Consensus 346 ~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~----P~d~~~YIHR 417 (543)
T KOG0342|consen 346 HAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDP----PSDPEQYIHR 417 (543)
T ss_pred HHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCC----CCCHHHHHHH
Confidence 44455556667888999999999999999999999999999999999999999999998 554 7789999999
Q ss_pred hccCCCCCCCCceEEEEeecCC
Q 006319 116 SGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+||+||.| ..|.++++..+.
T Consensus 418 vGRTaR~g--k~G~alL~l~p~ 437 (543)
T KOG0342|consen 418 VGRTAREG--KEGKALLLLAPW 437 (543)
T ss_pred hccccccC--CCceEEEEeChh
Confidence 99999988 677777776665
No 51
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.00 E-value=2.1e-09 Score=118.47 Aligned_cols=92 Identities=24% Similarity=0.335 Sum_probs=79.0
Q ss_pred HHhHHHHh----ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhH
Q 006319 36 VSNILPLL----KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGE 111 (650)
Q Consensus 36 ~~~l~~~l----~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e 111 (650)
..+|...| .-.|++.||..++..|+.+...|+.|.|.||+||+.+++|+|+...+.||+ ||- |-+...
T Consensus 400 ak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~----p~s~~s 471 (593)
T KOG0344|consen 400 AKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDF----PQSDLS 471 (593)
T ss_pred HHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cCC----CchhHH
Confidence 34455544 235899999999999999999999999999999999999999999988888 553 667889
Q ss_pred HHhhhccCCCCCCCCceEEEEeecCC
Q 006319 112 YIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 112 ~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
|+|++||+||+| ..|.+|.+..+.
T Consensus 472 yihrIGRtgRag--~~g~Aitfytd~ 495 (593)
T KOG0344|consen 472 YIHRIGRTGRAG--RSGKAITFYTDQ 495 (593)
T ss_pred HHHHhhccCCCC--CCcceEEEeccc
Confidence 999999999999 788888887664
No 52
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.99 E-value=2.4e-09 Score=115.02 Aligned_cols=94 Identities=22% Similarity=0.337 Sum_probs=80.9
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
..|-..||.|....|..+...|.+-.=.||+||+.+|+|+|+|....|+. ||+ |.+++.|.||+||+||.|
T Consensus 282 ~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~Dp----P~~~~~FvHR~GRTaR~g- 352 (567)
T KOG0345|consen 282 REIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDP----PKDPSSFVHRCGRTARAG- 352 (567)
T ss_pred CcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCC----CCChhHHHhhcchhhhcc-
Confidence 45778899999999999999999988889999999999999999999998 775 889999999999999999
Q ss_pred CCceEEEEeecCCCcHHHHHHHhcCC
Q 006319 125 DERGICILMVDDKMEPSTAKMMLKGS 150 (650)
Q Consensus 125 d~~G~~ii~~~~~~~~~~~~~~~~~~ 150 (650)
..|.++++..+. + ..+..|+.-.
T Consensus 353 -r~G~Aivfl~p~-E-~aYveFl~i~ 375 (567)
T KOG0345|consen 353 -REGNAIVFLNPR-E-EAYVEFLRIK 375 (567)
T ss_pred -CccceEEEeccc-H-HHHHHHHHhc
Confidence 788888888874 3 4444555433
No 53
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.99 E-value=1.1e-09 Score=118.51 Aligned_cols=81 Identities=17% Similarity=0.106 Sum_probs=67.6
Q ss_pred CEEEEcCCCCHHHHHHH----HHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCC
Q 006319 46 GIGVHHSGLLPILKEVI----EILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGR 121 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~v----e~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR 121 (650)
.+..+||+|++.+|..+ ...|++|..+|||||+.+++|+|+|...||.. +.++..|+||+||+||
T Consensus 250 ~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~~-----------~~~~~~~iqr~GR~gR 318 (358)
T TIGR01587 250 EIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISADVMITE-----------LAPIDSLIQRLGRLHR 318 (358)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCCCEEEEc-----------CCCHHHHHHHhccccC
Confidence 47899999999999775 66899999999999999999999997766654 3457899999999999
Q ss_pred CCCC--CceEEEEeecCC
Q 006319 122 RGID--ERGICILMVDDK 137 (650)
Q Consensus 122 ~g~d--~~G~~ii~~~~~ 137 (650)
.|.. ..|.++++....
T Consensus 319 ~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 319 YGRKNGENFEVYIITIAP 336 (358)
T ss_pred CCCCCCCCCeEEEEeecC
Confidence 9865 346888887654
No 54
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.97 E-value=1.3e-09 Score=117.91 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=91.0
Q ss_pred chhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHH
Q 006319 33 LPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEY 112 (650)
Q Consensus 33 ~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~ 112 (650)
..-++-|.-+|...+|-.||.|++..|-.....|+++.|+|||||+..++|+|++...+||+ |+ .|.+...|
T Consensus 439 AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~----mP~t~e~Y 510 (691)
T KOG0338|consen 439 AHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YA----MPKTIEHY 510 (691)
T ss_pred HHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----cc----CchhHHHH
Confidence 33455566777788999999999999999999999999999999999999999999999998 33 48899999
Q ss_pred HhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcC
Q 006319 113 IQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKG 149 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~ 149 (650)
+||+||+.|.| ..|.++.++.+. +...++.++..
T Consensus 511 ~HRVGRTARAG--RaGrsVtlvgE~-dRkllK~iik~ 544 (691)
T KOG0338|consen 511 LHRVGRTARAG--RAGRSVTLVGES-DRKLLKEIIKS 544 (691)
T ss_pred HHHhhhhhhcc--cCcceEEEeccc-cHHHHHHHHhh
Confidence 99999999999 678888887776 56677777654
No 55
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.96 E-value=1.2e-09 Score=118.62 Aligned_cols=91 Identities=23% Similarity=0.330 Sum_probs=77.9
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCC
Q 006319 46 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGID 125 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d 125 (650)
.+--.||+|++++|..+.+.|+...=-||+||+..++|+|+|....||. ||. |.++.||+||+||+.|.|
T Consensus 473 k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd~----P~s~adylHRvGRTARaG-- 542 (708)
T KOG0348|consen 473 KFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YDP----PFSTADYLHRVGRTARAG-- 542 (708)
T ss_pred eEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE----eCC----CCCHHHHHHHhhhhhhcc--
Confidence 3667799999999999999999777779999999999999999999998 554 899999999999999999
Q ss_pred CceEEEEeecCCCcHHHHHHHhc
Q 006319 126 ERGICILMVDDKMEPSTAKMMLK 148 (650)
Q Consensus 126 ~~G~~ii~~~~~~~~~~~~~~~~ 148 (650)
..|.++++..+. +.+ +.+++.
T Consensus 543 ~kG~alLfL~P~-Eae-y~~~l~ 563 (708)
T KOG0348|consen 543 EKGEALLFLLPS-EAE-YVNYLK 563 (708)
T ss_pred CCCceEEEeccc-HHH-HHHHHH
Confidence 778888887776 344 444443
No 56
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=98.96 E-value=3.3e-09 Score=115.66 Aligned_cols=101 Identities=26% Similarity=0.285 Sum_probs=83.9
Q ss_pred HhHHHHhccCE--EEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHh
Q 006319 37 SNILPLLKRGI--GVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQ 114 (650)
Q Consensus 37 ~~l~~~l~~GI--g~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~q 114 (650)
..+..-|+-|+ -..||+|++..|-.|...|-...--|||||+..++|+|+|+.++||. ||+ |-++.+|+|
T Consensus 330 ~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~DC----Pedv~tYIH 401 (758)
T KOG0343|consen 330 YEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VDC----PEDVDTYIH 401 (758)
T ss_pred HHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE----ecC----chhHHHHHH
Confidence 33444455565 46799999999999999999999999999999999999999999998 665 889999999
Q ss_pred hhccCCCCCCCCceEEEEeecCCCcHHHHHHHh
Q 006319 115 MSGRAGRRGIDERGICILMVDDKMEPSTAKMML 147 (650)
Q Consensus 115 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~ 147 (650)
|+||+.|.+ ..|.++++..+..++..+..+-
T Consensus 402 RvGRtAR~~--~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 402 RVGRTARYK--ERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred Hhhhhhccc--CCCceEEEEcchhHHHHHHHHH
Confidence 999999998 7788888877774445555443
No 57
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.94 E-value=3.4e-09 Score=119.42 Aligned_cols=91 Identities=26% Similarity=0.503 Sum_probs=78.1
Q ss_pred hHHHHh-ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEe-ccccccCCCccccCHhHHHhh
Q 006319 38 NILPLL-KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFT-NVRKFDGDKFRWISSGEYIQM 115 (650)
Q Consensus 38 ~l~~~l-~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~-~~~k~dg~~~~~~~~~e~~qm 115 (650)
.|...+ .+.||..||.|++.+|+.|...|++|.++|||||+..+.|||+|..+|++- +.. -+..+.+.|.
T Consensus 500 ~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AE--------RFGLaQLHQL 571 (677)
T COG1200 500 ELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAE--------RFGLAQLHQL 571 (677)
T ss_pred HHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechh--------hhhHHHHHHh
Confidence 344333 345999999999999999999999999999999999999999999887655 332 3678999999
Q ss_pred hccCCCCCCCCceEEEEeecCCC
Q 006319 116 SGRAGRRGIDERGICILMVDDKM 138 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~~ 138 (650)
-||+||.+ ..+.|++++.++.
T Consensus 572 RGRVGRG~--~qSyC~Ll~~~~~ 592 (677)
T COG1200 572 RGRVGRGD--LQSYCVLLYKPPL 592 (677)
T ss_pred ccccCCCC--cceEEEEEeCCCC
Confidence 99999998 7899999998885
No 58
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.93 E-value=2e-09 Score=125.90 Aligned_cols=113 Identities=26% Similarity=0.443 Sum_probs=102.3
Q ss_pred HhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccc--cCHhHHHh
Q 006319 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRW--ISSGEYIQ 114 (650)
Q Consensus 37 ~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~--~~~~e~~q 114 (650)
..+++.|..||| |.||++.+-++|..+|..|.|+|+|.... +||+-+.+..||++|+++|||++|.+ ++..+++|
T Consensus 1400 ~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~ 1476 (1674)
T KOG0951|consen 1400 ETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQ 1476 (1674)
T ss_pred Hhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHH
Confidence 567888999999 99999999999999999999999999999 99999999999999999999997655 67999999
Q ss_pred hhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccc
Q 006319 115 MSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFH 159 (650)
Q Consensus 115 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~ 159 (650)
|.|+|.| -|.|+++|+.. .+.++++|+ .++.|++|++.
T Consensus 1477 m~G~a~~-----~~k~vi~~~~~-~k~yykkfl-~e~lPves~lq 1514 (1674)
T KOG0951|consen 1477 MVGLASG-----AGKCVIMCHTP-KKEYYKKFL-YEPLPVESHLQ 1514 (1674)
T ss_pred HhhhhcC-----CccEEEEecCc-hHHHHHHhc-cCcCchHHHHH
Confidence 9999987 56899999887 578888887 46889999874
No 59
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.92 E-value=3.1e-09 Score=123.74 Aligned_cols=108 Identities=26% Similarity=0.346 Sum_probs=84.7
Q ss_pred hHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhc
Q 006319 38 NILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSG 117 (650)
Q Consensus 38 ~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~G 117 (650)
.|.+.....|+.|||.++.+.|..+|+.|++|.++++|||+++..|||+.....||.- ..|.+++-++||+|
T Consensus 272 ~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~--------~SP~sV~r~lQRiG 343 (814)
T COG1201 272 RLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQL--------GSPKSVNRFLQRIG 343 (814)
T ss_pred HHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEe--------CCcHHHHHHhHhcc
Confidence 3444444789999999999999999999999999999999999999999998888872 24889999999999
Q ss_pred cCCCCCCCCceEEEEeecCCCc----HHHHHHHhcCCCCcc
Q 006319 118 RAGRRGIDERGICILMVDDKME----PSTAKMMLKGSADSL 154 (650)
Q Consensus 118 RAGR~g~d~~G~~ii~~~~~~~----~~~~~~~~~~~~~pl 154 (650)
|||++. +....+++++.+..+ ...+.....|..+++
T Consensus 344 RsgHr~-~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~ 383 (814)
T COG1201 344 RAGHRL-GEVSKGIIIAEDRDDLLECLVLADLALEGKLERI 383 (814)
T ss_pred cccccc-CCcccEEEEecCHHHHHHHHHHHHHHHhCCcccC
Confidence 999765 345666666665311 223455666766543
No 60
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.86 E-value=4.6e-09 Score=124.50 Aligned_cols=110 Identities=28% Similarity=0.406 Sum_probs=91.9
Q ss_pred CCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCH
Q 006319 30 DKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISS 109 (650)
Q Consensus 30 d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~ 109 (650)
-+.+.++.....-.....+++|+||++..|+.|...|..|.++|+|||=.|+||||.|.++-||+. ..|-+.
T Consensus 495 r~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~--------~lPks~ 566 (941)
T KOG0351|consen 495 RKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHY--------SLPKSF 566 (941)
T ss_pred cchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEEC--------CCchhH
Confidence 455667766666666677899999999999999999999999999999999999999998877772 247789
Q ss_pred hHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCC
Q 006319 110 GEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGS 150 (650)
Q Consensus 110 ~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~ 150 (650)
..|.|-+|||||.| ....|+++.... +...+..++...
T Consensus 567 E~YYQE~GRAGRDG--~~s~C~l~y~~~-D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 567 EGYYQEAGRAGRDG--LPSSCVLLYGYA-DISELRRLLTSG 604 (941)
T ss_pred HHHHHhccccCcCC--CcceeEEecchh-HHHHHHHHHHcc
Confidence 99999999999999 678888887776 556666666543
No 61
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=98.85 E-value=4.8e-09 Score=114.42 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=101.9
Q ss_pred EEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCc
Q 006319 48 GVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDER 127 (650)
Q Consensus 48 g~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~ 127 (650)
-..|+.|.+..|-.-.+.|++..--||+||+..|+|+|+|....||+ ++.|-+..-|+||+||+.|.+ ..
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------YqVPrtseiYVHRSGRTARA~--~~ 560 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--------YQVPRTSEIYVHRSGRTARAN--SE 560 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--------eecCCccceeEeccccccccc--CC
Confidence 46799999999999999999999999999999999999999888888 457889999999999999999 78
Q ss_pred eEEEEeecCCCcHHHHHHH----hcCCCCccccccccChHHHHHHHHhcCCChHHHHHhhHHHHHhhcCccHHHHHHHHH
Q 006319 128 GICILMVDDKMEPSTAKMM----LKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVL 203 (650)
Q Consensus 128 G~~ii~~~~~~~~~~~~~~----~~~~~~pl~S~~~~~~~~~l~ll~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~~ 203 (650)
|..+++|.+.. ...+.++ -..+..|+ |.+ ..-+++.++..-.=+..+-+..|.-++.......+++-..++
T Consensus 561 Gvsvml~~P~e-~~~~~KL~ktL~k~~dlpi---fPv-~~~~m~~lkeRvrLA~ei~~~e~k~~~v~~~~sWlkkaA~el 635 (731)
T KOG0347|consen 561 GVSVMLCGPQE-VGPLKKLCKTLKKKEDLPI---FPV-ETDIMDALKERVRLAREIDKLEIKSKRVRKEESWLKKAADEL 635 (731)
T ss_pred CeEEEEeChHH-hHHHHHHHHHHhhccCCCc---eec-cHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh
Confidence 99999999873 3333333 22333454 333 344444443211113334444555555555555555555555
Q ss_pred HHH
Q 006319 204 EEE 206 (650)
Q Consensus 204 ~~~ 206 (650)
.-.
T Consensus 636 ~id 638 (731)
T KOG0347|consen 636 GID 638 (731)
T ss_pred CCc
Confidence 433
No 62
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.83 E-value=1.1e-08 Score=111.85 Aligned_cols=92 Identities=24% Similarity=0.314 Sum_probs=74.8
Q ss_pred HHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhh
Q 006319 36 VSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQM 115 (650)
Q Consensus 36 ~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm 115 (650)
+..+........--.||.-++.+|+....+|+.|.+.+||||+..|+|+|+|.+.-||. || .|-+..+|+||
T Consensus 353 l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yD----mP~d~d~YvHR 424 (482)
T KOG0335|consen 353 LAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YD----MPADIDDYVHR 424 (482)
T ss_pred HHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----ee----cCcchhhHHHh
Confidence 33333333445567899999999999999999999999999999999999998555554 33 26789999999
Q ss_pred hccCCCCCCCCceEEEEeecCC
Q 006319 116 SGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+||+||.| ..|.++.+.+..
T Consensus 425 IGRTGR~G--n~G~atsf~n~~ 444 (482)
T KOG0335|consen 425 IGRTGRVG--NGGRATSFFNEK 444 (482)
T ss_pred ccccccCC--CCceeEEEeccc
Confidence 99999999 677777777744
No 63
>KOG4284 consensus DEAD box protein [Transcription]
Probab=98.79 E-value=1.5e-08 Score=112.13 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=75.5
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
..+-+..|.|++.+|..+...++.-.++|||+|+..|+|||-|..+.||+ .| .|.+..+|+||+|||||.|
T Consensus 297 ~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD----~p~d~eTY~HRIGRAgRFG- 367 (980)
T KOG4284|consen 297 LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN----ID----APADEETYFHRIGRAGRFG- 367 (980)
T ss_pred CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe----cC----CCcchHHHHHHhhhccccc-
Confidence 34567899999999999999999999999999999999999999998887 23 4889999999999999999
Q ss_pred CCceEEEEeecCCCc
Q 006319 125 DERGICILMVDDKME 139 (650)
Q Consensus 125 d~~G~~ii~~~~~~~ 139 (650)
..|.++.++.+..+
T Consensus 368 -~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 368 -AHGAAVTLLEDERE 381 (980)
T ss_pred -ccceeEEEeccchh
Confidence 78888888877643
No 64
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.78 E-value=1.2e-08 Score=110.37 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=77.5
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
..+..+.|++....|......|+.|.|+|||||+.+++|||+...++||+ ||. |.+...|+||+||++|+|
T Consensus 458 ~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN----Yd~----P~~~ktyVHR~GRTARAg- 528 (620)
T KOG0350|consen 458 FKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN----YDP----PASDKTYVHRAGRTARAG- 528 (620)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee----cCC----CchhhHHHHhhccccccc-
Confidence 35667889999999999999999999999999999999999999999998 664 889999999999999999
Q ss_pred CCceEEEEeecCCCcHHHHHHHh
Q 006319 125 DERGICILMVDDKMEPSTAKMML 147 (650)
Q Consensus 125 d~~G~~ii~~~~~~~~~~~~~~~ 147 (650)
..|.++.+.... +...+.+++
T Consensus 529 -q~G~a~tll~~~-~~r~F~klL 549 (620)
T KOG0350|consen 529 -QDGYAITLLDKH-EKRLFSKLL 549 (620)
T ss_pred -CCceEEEeeccc-cchHHHHHH
Confidence 567777666655 333444444
No 65
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.76 E-value=1.9e-07 Score=111.70 Aligned_cols=105 Identities=19% Similarity=0.152 Sum_probs=79.4
Q ss_pred HhHHHHhc--cCE--EEEcCCCCHHHHHHHHHHHHc--CCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHh
Q 006319 37 SNILPLLK--RGI--GVHHSGLLPILKEVIEILFQE--GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSG 110 (650)
Q Consensus 37 ~~l~~~l~--~GI--g~hH~gl~~~~R~~ve~lF~~--g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~ 110 (650)
..+.+.|. .|+ ...||||++.+|+.+...|++ |.++|||||+..++|+|++..+.||+ || .|.+|.
T Consensus 507 ~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn----fD----lP~nP~ 578 (956)
T PRK04914 507 LQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL----FD----LPFNPD 578 (956)
T ss_pred HHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE----ec----CCCCHH
Confidence 44555552 354 569999999999999999997 46999999999999999998666665 44 388999
Q ss_pred HHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcC
Q 006319 111 EYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKG 149 (650)
Q Consensus 111 e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~ 149 (650)
.|.|++||+||.|......+++.+......+.+.+++..
T Consensus 579 ~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 579 LLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 999999999999976554455544444344555555543
No 66
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.76 E-value=3.5e-08 Score=114.53 Aligned_cols=94 Identities=23% Similarity=0.240 Sum_probs=76.4
Q ss_pred HhHHHHhc---cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCce-EEEeccccccCCCccccCHhHH
Q 006319 37 SNILPLLK---RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKT-VVFTNVRKFDGDKFRWISSGEY 112 (650)
Q Consensus 37 ~~l~~~l~---~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~-VVi~~~~k~dg~~~~~~~~~e~ 112 (650)
..|.+.|. ..+++.||++...+|..+...|+.|.++|||||+.+++|+|+|... ||+.+..+| ..|-+...|
T Consensus 456 e~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dadif----G~p~~~~~~ 531 (655)
T TIGR00631 456 EDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKE----GFLRSERSL 531 (655)
T ss_pred HHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccc----cCCCCHHHH
Confidence 44444443 3457899999999999999999999999999999999999999976 555554432 246688999
Q ss_pred HhhhccCCCCCCCCceEEEEeecCC
Q 006319 113 IQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+|++|||||.. .|.++++++..
T Consensus 532 iqriGRagR~~---~G~vi~~~~~~ 553 (655)
T TIGR00631 532 IQTIGRAARNV---NGKVIMYADKI 553 (655)
T ss_pred HHHhcCCCCCC---CCEEEEEEcCC
Confidence 99999999974 79999988865
No 67
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.75 E-value=1.9e-08 Score=105.68 Aligned_cols=85 Identities=27% Similarity=0.403 Sum_probs=74.0
Q ss_pred hccCE--EEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCC
Q 006319 43 LKRGI--GVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120 (650)
Q Consensus 43 l~~GI--g~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAG 120 (650)
|-.|| ...|||-.+++|.....+|+.|.-+|||||+..+-|+|+|+...||+ || .|-...+|.||+||+|
T Consensus 442 LlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yD----MP~eIENYVHRIGRTG 513 (610)
T KOG0341|consen 442 LLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YD----MPEEIENYVHRIGRTG 513 (610)
T ss_pred HHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CC----ChHHHHHHHHHhcccC
Confidence 45676 57899999999999999999999999999999999999999887887 55 3778999999999999
Q ss_pred CCCCCCceEEEEeecCC
Q 006319 121 RRGIDERGICILMVDDK 137 (650)
Q Consensus 121 R~g~d~~G~~ii~~~~~ 137 (650)
|.| ..|.+..+.+..
T Consensus 514 Rsg--~~GiATTfINK~ 528 (610)
T KOG0341|consen 514 RSG--KTGIATTFINKN 528 (610)
T ss_pred CCC--Ccceeeeeeccc
Confidence 999 677776665555
No 68
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.73 E-value=3.8e-08 Score=114.67 Aligned_cols=94 Identities=26% Similarity=0.298 Sum_probs=75.3
Q ss_pred HhHHHHhc-cC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCce-EEEeccccccCCCccccCHhHH
Q 006319 37 SNILPLLK-RG--IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKT-VVFTNVRKFDGDKFRWISSGEY 112 (650)
Q Consensus 37 ~~l~~~l~-~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~-VVi~~~~k~dg~~~~~~~~~e~ 112 (650)
..|.+.|. .| ++++||++...+|..+...|+.|.+.|||||..+++|+|+|... ||+.+...|. -|-+...|
T Consensus 460 e~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG----~~~~~~~y 535 (652)
T PRK05298 460 EDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEG----FLRSERSL 535 (652)
T ss_pred HHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccc----cCCCHHHH
Confidence 44444443 34 57899999999999999999999999999999999999999966 4555543332 24578899
Q ss_pred HhhhccCCCCCCCCceEEEEeecCC
Q 006319 113 IQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+||+||+||. ..|.++++++..
T Consensus 536 iqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 536 IQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HHHhccccCC---CCCEEEEEecCC
Confidence 9999999995 479999998854
No 69
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.72 E-value=3.5e-08 Score=102.73 Aligned_cols=96 Identities=22% Similarity=0.323 Sum_probs=80.1
Q ss_pred hhHHhHHHHhcc-----CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccC
Q 006319 34 PQVSNILPLLKR-----GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWIS 108 (650)
Q Consensus 34 ~~~~~l~~~l~~-----GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~ 108 (650)
+...+..+.++. .|++.|+. ...|......|++|.+++|++|+.+++||.+|...|.+.+. +|+-++
T Consensus 316 ~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlga------eh~vfT 387 (441)
T COG4098 316 ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGA------EHRVFT 387 (441)
T ss_pred HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecC------Cccccc
Confidence 334445555533 45666765 55677788899999999999999999999999999999876 788899
Q ss_pred HhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 109 SGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 109 ~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
.+.++|++||+||.-..+.|.++++....
T Consensus 388 esaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 388 ESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred HHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 99999999999999888999999987776
No 70
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.68 E-value=2.8e-08 Score=105.68 Aligned_cols=96 Identities=26% Similarity=0.437 Sum_probs=79.8
Q ss_pred ccCEE--EEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCC
Q 006319 44 KRGIG--VHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGR 121 (650)
Q Consensus 44 ~~GIg--~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR 121 (650)
.+||+ .+|+||-..+|..|.+.+-+|.+.|++||-.|+||||-|..+.||+ ||. +-+..-|.|-+|||||
T Consensus 277 ~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~----~qn~AgYYQESGRAGR 348 (641)
T KOG0352|consen 277 IAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSP----SQNLAGYYQESGRAGR 348 (641)
T ss_pred hcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCc----hhhhHHHHHhcccccc
Confidence 45665 7899999999999999999999999999999999999999999998 543 5688999999999999
Q ss_pred CCCCCceEEEEeecCCCcHHHHHHHhcCC
Q 006319 122 RGIDERGICILMVDDKMEPSTAKMMLKGS 150 (650)
Q Consensus 122 ~g~d~~G~~ii~~~~~~~~~~~~~~~~~~ 150 (650)
.| ..+.|=+++... +...+.-++.++
T Consensus 349 DG--k~SyCRLYYsR~-D~~~i~FLi~~e 374 (641)
T KOG0352|consen 349 DG--KRSYCRLYYSRQ-DKNALNFLVSGE 374 (641)
T ss_pred CC--Cccceeeeeccc-chHHHHHHHhhH
Confidence 99 567777766554 455555555443
No 71
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.64 E-value=6.6e-08 Score=112.17 Aligned_cols=98 Identities=20% Similarity=0.260 Sum_probs=72.6
Q ss_pred HHhHHHHhc-----cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecccccc----CCCccc
Q 006319 36 VSNILPLLK-----RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFD----GDKFRW 106 (650)
Q Consensus 36 ~~~l~~~l~-----~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~d----g~~~~~ 106 (650)
+..+.+.|. ..+...||+|++.+ +.+...|++|..+|||||+.+++|||+|..++||..-.-+. +....+
T Consensus 408 i~~l~~~L~~~~~~~~v~~LHG~Lsq~e-q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~ 486 (675)
T PHA02653 408 CEEYKKYLEKRLPIYDFYIIHGKVPNID-EILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMF 486 (675)
T ss_pred HHHHHHHHHhhcCCceEEeccCCcCHHH-HHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccc
Confidence 444444443 34778999999852 33344447999999999999999999999998887531111 112346
Q ss_pred cCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 107 ISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 107 ~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
++.++|.||+|||||.+ .|.|+-+.+..
T Consensus 487 iSkasa~QRaGRAGR~~---~G~c~rLyt~~ 514 (675)
T PHA02653 487 ISKSMRTQRKGRVGRVS---PGTYVYFYDLD 514 (675)
T ss_pred cCHHHHHHhccCcCCCC---CCeEEEEECHH
Confidence 79999999999999994 79999887665
No 72
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.64 E-value=4.7e-08 Score=115.85 Aligned_cols=88 Identities=24% Similarity=0.244 Sum_probs=74.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecc----ccccCCC------ccccCHhHHHhhh
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV----RKFDGDK------FRWISSGEYIQMS 116 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~----~k~dg~~------~~~~~~~e~~qm~ 116 (650)
|..+||+|++.+|..+...|.+|..+|||||+.++.||++|..++||..- ..||... ..+++-+.|.||+
T Consensus 239 v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~ 318 (819)
T TIGR01970 239 ICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRA 318 (819)
T ss_pred EEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhh
Confidence 67789999999999999999999999999999999999999988777743 2465432 2357889999999
Q ss_pred ccCCCCCCCCceEEEEeecCC
Q 006319 117 GRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 117 GRAGR~g~d~~G~~ii~~~~~ 137 (650)
|||||.+ .|.||-+++..
T Consensus 319 GRAGR~~---~G~cyrL~t~~ 336 (819)
T TIGR01970 319 GRAGRLE---PGVCYRLWSEE 336 (819)
T ss_pred hhcCCCC---CCEEEEeCCHH
Confidence 9999994 89999887654
No 73
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=8.3e-08 Score=101.37 Aligned_cols=84 Identities=23% Similarity=0.411 Sum_probs=74.6
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
.+-+...||.|.+..|+.+.+.|+.|..+||+.|+.+|+|+|+-....|+. || .|-....|+|++||+||.|
T Consensus 287 ~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----yd----lP~~~~~yihR~gr~gr~g 358 (397)
T KOG0327|consen 287 GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YD----LPARKENYIHRIGRAGRFG 358 (397)
T ss_pred CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ec----cccchhhhhhhcccccccC
Confidence 445789999999999999999999999999999999999999999888887 33 3778999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.++-++.+.
T Consensus 359 --rkg~~in~v~~~ 370 (397)
T KOG0327|consen 359 --RKGVAINFVTEE 370 (397)
T ss_pred --CCceeeeeehHh
Confidence 778887777654
No 74
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.59 E-value=8.1e-08 Score=113.98 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=79.4
Q ss_pred HHhHHHHhcc----C--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEec-c---ccccCCC--
Q 006319 36 VSNILPLLKR----G--IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTN-V---RKFDGDK-- 103 (650)
Q Consensus 36 ~~~l~~~l~~----G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~-~---~k~dg~~-- 103 (650)
+..+.+.|.. + |..+||+|++.+|..+...|.+|..+|||||+.++.||++|..++||.. . ..||...
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 3445455542 3 6779999999999999999999999999999999999999998887774 2 2466542
Q ss_pred ----ccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 104 ----FRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 104 ----~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
..+++-++|.||+|||||.+ .|.||-++.+.
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t~~ 339 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRLE---PGICLHLYSKE 339 (812)
T ss_pred ceeEEEeechhhhhhhccccCCCC---CcEEEEecCHH
Confidence 23567899999999999984 89999887643
No 75
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.59 E-value=1.8e-07 Score=101.36 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhhcCCccC--------CCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcc
Q 006319 12 KVNIETIFWSAMDMLSDDD--------KKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIG 83 (650)
Q Consensus 12 ~~~i~~~~~~~i~~l~~~d--------~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~G 83 (650)
-+.+.-++.+.....++.+ .....+.....+-.+.|+..||.|.+.+|..+...|+.+...||+||+..++|
T Consensus 452 ~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaarg 531 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARG 531 (731)
T ss_pred HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcC
Confidence 3346666666555444322 11222333333444568999999999999999999999999999999999999
Q ss_pred cCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 84 LNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 84 in~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+|+|....|++ ||- .-++..|+|++||.||.| ..|.++.+..++
T Consensus 532 ldI~~ikTVvn----yD~----ardIdththrigrtgRag--~kGvayTlvTeK 575 (731)
T KOG0339|consen 532 LDIPSIKTVVN----YDF----ARDIDTHTHRIGRTGRAG--EKGVAYTLVTEK 575 (731)
T ss_pred CCccccceeec----ccc----cchhHHHHHHhhhccccc--ccceeeEEechh
Confidence 99998444444 221 347899999999999999 568888877766
No 76
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.59 E-value=1.3e-07 Score=110.87 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=66.9
Q ss_pred HhHHHHh-ccCEEEEcCCCCHHHHH-----HHHHHHHc----CC-------CcEEEechhhhcccCCCCceEEEeccccc
Q 006319 37 SNILPLL-KRGIGVHHSGLLPILKE-----VIEILFQE----GL-------IKCLFATETFSIGLNMPAKTVVFTNVRKF 99 (650)
Q Consensus 37 ~~l~~~l-~~GIg~hH~gl~~~~R~-----~ve~lF~~----g~-------i~vLvaT~tla~Gin~pa~~VVi~~~~k~ 99 (650)
..+.+.| ..|+...||+|++.+|+ .+...|++ |. .+|||||+.+++|||++...|| +.
T Consensus 286 q~L~~~L~~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI-~d---- 360 (844)
T TIGR02621 286 RKVFAKLPKEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLV-CD---- 360 (844)
T ss_pred HHHHHHHHhcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCcceEE-EC----
Confidence 3344444 35778999999999999 77888987 54 7899999999999999995554 42
Q ss_pred cCCCccccCHhHHHhhhccCCCCCCCCceEEEEe
Q 006319 100 DGDKFRWISSGEYIQMSGRAGRRGIDERGICILM 133 (650)
Q Consensus 100 dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~ 133 (650)
..+.+.|+||+||+||.|....+.++++
T Consensus 361 ------~aP~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 361 ------LAPFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred ------CCCHHHHHHHhcccCCCCCCCCceEEEE
Confidence 1346899999999999997655545554
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.54 E-value=2e-07 Score=105.74 Aligned_cols=82 Identities=16% Similarity=0.067 Sum_probs=66.7
Q ss_pred HHhHHHHhc---cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEec-hhhhcccCCCCceEEEeccccccCCCccccCHhH
Q 006319 36 VSNILPLLK---RGIGVHHSGLLPILKEVIEILFQEGLIKCLFAT-ETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGE 111 (650)
Q Consensus 36 ~~~l~~~l~---~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT-~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e 111 (650)
...|.+.|. ..+.+.||+|+..+|+.+.+.|++|...||+|| +.++.|+|+|..++||... .+-+...
T Consensus 357 ~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~--------p~~s~~~ 428 (501)
T PHA02558 357 GKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAH--------PSKSKII 428 (501)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEec--------CCcchhh
Confidence 444555543 357899999999999999999999999999999 8999999999977666532 1335788
Q ss_pred HHhhhccCCCCCCC
Q 006319 112 YIQMSGRAGRRGID 125 (650)
Q Consensus 112 ~~qm~GRAGR~g~d 125 (650)
|+||+||+||.+.+
T Consensus 429 ~~QriGR~~R~~~~ 442 (501)
T PHA02558 429 VLQSIGRVLRKHGS 442 (501)
T ss_pred hhhhhhccccCCCC
Confidence 99999999999743
No 78
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.53 E-value=3.2e-07 Score=109.11 Aligned_cols=91 Identities=19% Similarity=0.345 Sum_probs=77.7
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC-ceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 46 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA-KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa-~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
.|++-||.|++.+-+.|...|-+|..+||+||+...-|||+|. .|+||.+.. -+..+++.|+-||+||..
T Consensus 831 rI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD--------~fGLsQLyQLRGRVGRS~- 901 (1139)
T COG1197 831 RIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERAD--------KFGLAQLYQLRGRVGRSN- 901 (1139)
T ss_pred EEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccc--------cccHHHHHHhccccCCcc-
Confidence 6999999999999999999999999999999999999999997 566666553 367899999999999997
Q ss_pred CCceEEEEeecCC--CcHHHHHHH
Q 006319 125 DERGICILMVDDK--MEPSTAKMM 146 (650)
Q Consensus 125 d~~G~~ii~~~~~--~~~~~~~~~ 146 (650)
..|+|++++.+. +.....+++
T Consensus 902 -~~AYAYfl~p~~k~lT~~A~kRL 924 (1139)
T COG1197 902 -KQAYAYFLYPPQKALTEDAEKRL 924 (1139)
T ss_pred -ceEEEEEeecCccccCHHHHHHH
Confidence 799999998864 344444443
No 79
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=7.9e-07 Score=103.38 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=72.7
Q ss_pred hHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcC-CCcEEEechhhhcccCCCCceEEEeccccccCCCccc-cCHhHH
Q 006319 35 QVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEG-LIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRW-ISSGEY 112 (650)
Q Consensus 35 ~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g-~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~-~~~~e~ 112 (650)
++..+...+ |+.+.||++++.+|..+.+.|++| .+++||+|..+..|||+|..+|||. +++ + -+..+|
T Consensus 508 ~l~~~a~~L--~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~----~~gS~~q~ 577 (732)
T TIGR00603 508 ALKEYAIKL--GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISS----HYGSRRQE 577 (732)
T ss_pred HHHHHHHHc--CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCC----CCCCHHHH
Confidence 344444444 678899999999999999999975 8999999999999999999888776 221 3 378999
Q ss_pred HhhhccCCCCCCCCc-----eEEEEeecCC
Q 006319 113 IQMSGRAGRRGIDER-----GICILMVDDK 137 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~-----G~~ii~~~~~ 137 (650)
+||+||++|++.+.. +..|.+++..
T Consensus 578 iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 578 AQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred HHHhcccccCCCCCccccccceEEEEecCC
Confidence 999999999986544 2335555554
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.45 E-value=5.3e-07 Score=105.67 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=67.3
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCC---CCce-----EEEeccccccCCCccccCHhHHHhh
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNM---PAKT-----VVFTNVRKFDGDKFRWISSGEYIQM 115 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~---pa~~-----VVi~~~~k~dg~~~~~~~~~e~~qm 115 (650)
...+...||.+...++..+...++.| +|+|||+.++||+|+ |... .||. ...|.+...|.|+
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~--------~d~p~s~r~y~qr 521 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG--------TERMESRRVDLQL 521 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEe--------ccCCCCHHHHHHh
Confidence 34568999999999999888888877 799999999999999 5654 5555 1247899999999
Q ss_pred hccCCCCCCCCceEEEEeecCC
Q 006319 116 SGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+|||||.| ..|.++.+.+..
T Consensus 522 ~GRtGR~G--~~G~s~~~is~e 541 (790)
T PRK09200 522 RGRSGRQG--DPGSSQFFISLE 541 (790)
T ss_pred hccccCCC--CCeeEEEEEcch
Confidence 99999999 678777776654
No 81
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.42 E-value=6.9e-07 Score=102.72 Aligned_cols=82 Identities=17% Similarity=0.077 Sum_probs=61.7
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC---ce-----EEEeccccccCCCccccCHhHHHhh
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA---KT-----VVFTNVRKFDGDKFRWISSGEYIQM 115 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa---~~-----VVi~~~~k~dg~~~~~~~~~e~~qm 115 (650)
...+...||.+...++..+.. +.+.-+|+|||+.+++|+|+|. .. .||. | ..|-+...|.|+
T Consensus 497 gi~~~~Lhg~~~~rE~~ii~~--ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~----d~P~s~r~y~hr 566 (656)
T PRK12898 497 GLPHQVLNAKQDAEEAAIVAR--AGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----T----ERHDSARIDRQL 566 (656)
T ss_pred CCCEEEeeCCcHHHHHHHHHH--cCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE----c----CCCCCHHHHHHh
Confidence 345678999977666665554 4444579999999999999993 32 4554 1 247889999999
Q ss_pred hccCCCCCCCCceEEEEeecCC
Q 006319 116 SGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+||+||.| ..|.++.+.+..
T Consensus 567 ~GRTGRqG--~~G~s~~~is~e 586 (656)
T PRK12898 567 AGRCGRQG--DPGSYEAILSLE 586 (656)
T ss_pred cccccCCC--CCeEEEEEechh
Confidence 99999999 678888777654
No 82
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.41 E-value=6e-07 Score=98.06 Aligned_cols=77 Identities=26% Similarity=0.377 Sum_probs=64.9
Q ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceE
Q 006319 50 HHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGI 129 (650)
Q Consensus 50 hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~ 129 (650)
|..||++.+...+...|+.|.++|||||+....|+|+|....||. |++ --|+--++||.||+||. ..|.
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif----YEp----vpSeIR~IQR~GRTGR~---r~Gr 473 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF----YEP----VPSEIRSIQRKGRTGRK---RKGR 473 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE----ecC----CcHHHHHHHhhCccccC---CCCe
Confidence 458999999999999999999999999999999999999887777 442 22456789999999998 5788
Q ss_pred EEEeecCC
Q 006319 130 CILMVDDK 137 (650)
Q Consensus 130 ~ii~~~~~ 137 (650)
++++....
T Consensus 474 v~vLvt~g 481 (542)
T COG1111 474 VVVLVTEG 481 (542)
T ss_pred EEEEEecC
Confidence 87776555
No 83
>PRK13766 Hef nuclease; Provisional
Probab=98.41 E-value=1.1e-06 Score=104.96 Aligned_cols=74 Identities=24% Similarity=0.356 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEE
Q 006319 53 GLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICIL 132 (650)
Q Consensus 53 gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii 132 (650)
||++.+|..+...|++|.++|||||+.++.|+|+|..++||. ||. +.++..|+|++||+||.| .|.+++
T Consensus 406 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~----yd~----~~s~~r~iQR~GR~gR~~---~~~v~~ 474 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF----YEP----VPSEIRSIQRKGRTGRQE---EGRVVV 474 (773)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----eCC----CCCHHHHHHHhcccCcCC---CCEEEE
Confidence 599999999999999999999999999999999999887777 553 568889999999999987 477777
Q ss_pred eecCC
Q 006319 133 MVDDK 137 (650)
Q Consensus 133 ~~~~~ 137 (650)
+....
T Consensus 475 l~~~~ 479 (773)
T PRK13766 475 LIAKG 479 (773)
T ss_pred EEeCC
Confidence 76655
No 84
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.31 E-value=1.5e-06 Score=101.32 Aligned_cols=80 Identities=21% Similarity=0.165 Sum_probs=64.8
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCC---------CceEEEeccccccCCCccccCHhHHHhh
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMP---------AKTVVFTNVRKFDGDKFRWISSGEYIQM 115 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~p---------a~~VVi~~~~k~dg~~~~~~~~~e~~qm 115 (650)
......||.+...++..+...|+.| +|+|||+.+++|+|+| ..+||++ |+. |-.. ...|+
T Consensus 449 i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit----~~~----ps~r-id~qr 517 (762)
T TIGR03714 449 IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT----ERM----ENSR-VDLQL 517 (762)
T ss_pred CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe----cCC----CCcH-HHHHh
Confidence 3457899999999999998888887 7999999999999999 7788887 321 2233 44999
Q ss_pred hccCCCCCCCCceEEEEeecCC
Q 006319 116 SGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+|||||.| ..|.++.+.+..
T Consensus 518 ~GRtGRqG--~~G~s~~~is~e 537 (762)
T TIGR03714 518 RGRSGRQG--DPGSSQFFVSLE 537 (762)
T ss_pred hhcccCCC--CceeEEEEEccc
Confidence 99999999 678887777654
No 85
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.28 E-value=1.7e-06 Score=101.30 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=73.5
Q ss_pred HHHhccCEE--EEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhc
Q 006319 40 LPLLKRGIG--VHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSG 117 (650)
Q Consensus 40 ~~~l~~GIg--~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~G 117 (650)
.++...|+. ..|||.++.+|..++.-|++|.+.+|+||+.+|+|+|++...+||+ ||. |-...+|.|++|
T Consensus 631 ~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~----pnh~edyvhR~g 702 (997)
T KOG0334|consen 631 RDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDF----PNHYEDYVHRVG 702 (997)
T ss_pred HHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE----ccc----chhHHHHHHHhc
Confidence 344455653 4799999999999999999999999999999999999999888887 554 344667999999
Q ss_pred cCCCCCCCCceEEEEeecC
Q 006319 118 RAGRRGIDERGICILMVDD 136 (650)
Q Consensus 118 RAGR~g~d~~G~~ii~~~~ 136 (650)
|+||.| ..|.++.|..+
T Consensus 703 RTgrag--rkg~AvtFi~p 719 (997)
T KOG0334|consen 703 RTGRAG--RKGAAVTFITP 719 (997)
T ss_pred ccccCC--ccceeEEEeCh
Confidence 999999 67788877766
No 86
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.28 E-value=1.1e-06 Score=107.02 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=70.0
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEec----cccccCCC------ccccCHhHHHhhh
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTN----VRKFDGDK------FRWISSGEYIQMS 116 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~----~~k~dg~~------~~~~~~~e~~qm~ 116 (650)
|..+||+|++.+|..+... .|..+||+||+.++.||++|...+||.. .+.||... ..+++.+.|.||+
T Consensus 316 VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRa 393 (1294)
T PRK11131 316 ILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRK 393 (1294)
T ss_pred EeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhc
Confidence 5578999999999998775 5889999999999999999998888874 24566542 1245668999999
Q ss_pred ccCCCCCCCCceEEEEeecCC
Q 006319 117 GRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 117 GRAGR~g~d~~G~~ii~~~~~ 137 (650)
|||||.+ .|.||-++++.
T Consensus 394 GRAGR~~---~G~c~rLyte~ 411 (1294)
T PRK11131 394 GRCGRVS---EGICIRLYSED 411 (1294)
T ss_pred cccCCCC---CcEEEEeCCHH
Confidence 9999995 89999887643
No 87
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.27 E-value=7.4e-07 Score=93.53 Aligned_cols=96 Identities=29% Similarity=0.323 Sum_probs=75.2
Q ss_pred CCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHh
Q 006319 31 KKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSG 110 (650)
Q Consensus 31 ~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~ 110 (650)
+.+.++..-..-+.-..|.+|+.|.|.+|.-+.+-+..|.|+|+|||-.|+||||-|..+.||+.. .|-+..
T Consensus 328 ~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhs--------l~ksie 399 (695)
T KOG0353|consen 328 KDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHS--------LPKSIE 399 (695)
T ss_pred ccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecc--------cchhHH
Confidence 345555444333333448899999999999999999999999999999999999999988777632 356788
Q ss_pred HHHh-------------------------------------------hhccCCCCCCCCceEEEEeecC
Q 006319 111 EYIQ-------------------------------------------MSGRAGRRGIDERGICILMVDD 136 (650)
Q Consensus 111 e~~q-------------------------------------------m~GRAGR~g~d~~G~~ii~~~~ 136 (650)
.|.| -.|||||.+ ..+.||+++.-
T Consensus 400 nyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~ 466 (695)
T KOG0353|consen 400 NYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGF 466 (695)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEech
Confidence 8888 789999998 46677776543
No 88
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=98.22 E-value=5.5e-06 Score=88.97 Aligned_cols=95 Identities=26% Similarity=0.331 Sum_probs=75.7
Q ss_pred cCE--EEEcCCCCHHHHHHHHHHHHcCCCcEEEech-----------------------------------hhhcccCCC
Q 006319 45 RGI--GVHHSGLLPILKEVIEILFQEGLIKCLFATE-----------------------------------TFSIGLNMP 87 (650)
Q Consensus 45 ~GI--g~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~-----------------------------------tla~Gin~p 87 (650)
+|| .+.+|.|+..-|.-|...|.+|..+++|||+ -.++|||+.
T Consensus 291 FGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~ 370 (569)
T KOG0346|consen 291 FGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFH 370 (569)
T ss_pred hCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccch
Confidence 455 5889999999999999999999999999999 257999999
Q ss_pred CceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCCC--cHHHHHHHhcC
Q 006319 88 AKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKM--EPSTAKMMLKG 149 (650)
Q Consensus 88 a~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~--~~~~~~~~~~~ 149 (650)
.++.|++ ||- |-++..|+||+||++|.+ ..|.++-++.+.. -...+++++.+
T Consensus 371 ~V~~VlN----FD~----P~t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 371 HVSNVLN----FDF----PETVTSYIHRVGRTARGN--NKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred heeeeee----cCC----CCchHHHHHhccccccCC--CCCceEEEecchHHhhhhHHHHHHhh
Confidence 9888887 653 789999999999999999 5666666665552 12344555443
No 89
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.19 E-value=2.7e-06 Score=92.46 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=53.9
Q ss_pred HHhHHHHhcc-----CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHh
Q 006319 36 VSNILPLLKR-----GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSG 110 (650)
Q Consensus 36 ~~~l~~~l~~-----GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~ 110 (650)
...+...|.. .+..+||.+++..|+.+ +.++|||||+.+++|||+|...||+. |.++.
T Consensus 285 ~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~vi~~-----------p~~~~ 347 (357)
T TIGR03158 285 VNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDWLIFS-----------ARDAA 347 (357)
T ss_pred HHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCceEEEC-----------CCCHH
Confidence 4445555542 35789999999988643 47899999999999999999866542 56789
Q ss_pred HHHhhhccCC
Q 006319 111 EYIQMSGRAG 120 (650)
Q Consensus 111 e~~qm~GRAG 120 (650)
.|+||+||+|
T Consensus 348 ~yiqR~GR~g 357 (357)
T TIGR03158 348 AFWQRLGRLG 357 (357)
T ss_pred HHhhhcccCC
Confidence 9999999998
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.16 E-value=7.1e-06 Score=93.00 Aligned_cols=91 Identities=23% Similarity=0.233 Sum_probs=69.4
Q ss_pred cCEEEEcCCCCHHHH--HHHHHHHHcCCCcEEEechhhhcccCCCCce-EEEeccccc-cCCCcc--ccCHhHHHhhhcc
Q 006319 45 RGIGVHHSGLLPILK--EVIEILFQEGLIKCLFATETFSIGLNMPAKT-VVFTNVRKF-DGDKFR--WISSGEYIQMSGR 118 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R--~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~-VVi~~~~k~-dg~~~~--~~~~~e~~qm~GR 118 (650)
..|...|+.+....+ +.+...|++|.++|||+|..++.|+|+|..+ |+|.+.... ....++ .-+...|+|++||
T Consensus 285 ~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GR 364 (505)
T TIGR00595 285 ARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGR 364 (505)
T ss_pred CcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhc
Confidence 478899999987766 8899999999999999999999999999976 545543210 000100 1235779999999
Q ss_pred CCCCCCCCceEEEEeecCC
Q 006319 119 AGRRGIDERGICILMVDDK 137 (650)
Q Consensus 119 AGR~g~d~~G~~ii~~~~~ 137 (650)
|||.+ ..|.+++.+..+
T Consensus 365 agR~~--~~g~viiqt~~p 381 (505)
T TIGR00595 365 AGRAE--DPGQVIIQTYNP 381 (505)
T ss_pred cCCCC--CCCEEEEEeCCC
Confidence 99987 679999877665
No 91
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.16 E-value=3.8e-06 Score=102.80 Aligned_cols=85 Identities=24% Similarity=0.278 Sum_probs=68.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcC-CCcEEEechhhhcccCCCCceEEEecc----ccccCCC------ccccCHhHHHhh
Q 006319 47 IGVHHSGLLPILKEVIEILFQEG-LIKCLFATETFSIGLNMPAKTVVFTNV----RKFDGDK------FRWISSGEYIQM 115 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g-~i~vLvaT~tla~Gin~pa~~VVi~~~----~k~dg~~------~~~~~~~e~~qm 115 (650)
|..+||+|++.++..+ |+.+ .-+||+||++.+.||++|...+||..- ..||... ..+++.++|.||
T Consensus 309 VlpLhg~Ls~~eQ~~v---f~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QR 385 (1283)
T TIGR01967 309 ILPLYARLSNKEQQRV---FQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQR 385 (1283)
T ss_pred EEeccCCCCHHHHHHH---hCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHH
Confidence 6689999999999988 4433 479999999999999999988888743 4566542 235577899999
Q ss_pred hccCCCCCCCCceEEEEeecCC
Q 006319 116 SGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+|||||.| .|.||-+++..
T Consensus 386 aGRAGR~~---~G~cyRLyte~ 404 (1283)
T TIGR01967 386 KGRCGRVA---PGICIRLYSEE 404 (1283)
T ss_pred hhhhCCCC---CceEEEecCHH
Confidence 99999997 89999887643
No 92
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.16 E-value=2.5e-06 Score=101.78 Aligned_cols=82 Identities=24% Similarity=0.377 Sum_probs=70.6
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCcccc-CHhHHHhhhccCCCCCC
Q 006319 46 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWI-SSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~-~~~e~~qm~GRAGR~g~ 124 (650)
-|..|||||++.+|..++..|++|.+.++++|.++..|||+.+..+||..- .|. +..+++|++|||||++
T Consensus 340 ~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g--------~P~~s~~~~~Q~~GRaGR~~- 410 (851)
T COG1205 340 AVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYG--------YPGVSVLSFRQRAGRAGRRG- 410 (851)
T ss_pred heeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcC--------CCCchHHHHHHhhhhccCCC-
Confidence 489999999999999999999999999999999999999999977777632 355 7899999999999999
Q ss_pred CCceEEEEeecCC
Q 006319 125 DERGICILMVDDK 137 (650)
Q Consensus 125 d~~G~~ii~~~~~ 137 (650)
..+.++++....
T Consensus 411 -~~~l~~~v~~~~ 422 (851)
T COG1205 411 -QESLVLVVLRSD 422 (851)
T ss_pred -CCceEEEEeCCC
Confidence 556655555533
No 93
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.09 E-value=1.5e-05 Score=92.50 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCccCCC------chhHHhHHHHhc-cC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEe
Q 006319 6 LTEDDEKVNIETIFWSAMDMLSDDDKK------LPQVSNILPLLK-RG--IGVHHSGLLPILKEVIEILFQEGLIKCLFA 76 (650)
Q Consensus 6 ~~~~~e~~~i~~~~~~~i~~l~~~d~~------~~~~~~l~~~l~-~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLva 76 (650)
|.|.++| .+.++++....-....+. ..+...+.+.|. .| ....||. ...|+.....|+.|...|+||
T Consensus 384 ~~t~~~k--~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIA 459 (745)
T TIGR00963 384 YKTEEEK--WKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIA 459 (745)
T ss_pred EcCHHHH--HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEE
Confidence 4455554 456666654433333332 223344555553 35 4677888 889999999999999999999
Q ss_pred chhhhcccCCCC-------ceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 77 TETFSIGLNMPA-------KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 77 T~tla~Gin~pa-------~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
|+.+++|+|++. -..||. ..+|-+...|.|+.||+||.| ..|.+.++.+..
T Consensus 460 TnmAgRGtDI~l~~V~~~GGl~VI~--------t~~p~s~ri~~q~~GRtGRqG--~~G~s~~~ls~e 517 (745)
T TIGR00963 460 TNMAGRGTDIKLEEVKELGGLYVIG--------TERHESRRIDNQLRGRSGRQG--DPGSSRFFLSLE 517 (745)
T ss_pred eccccCCcCCCccchhhcCCcEEEe--------cCCCCcHHHHHHHhccccCCC--CCcceEEEEecc
Confidence 999999999998 334554 235889999999999999999 567777666654
No 94
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.08 E-value=1.2e-05 Score=94.21 Aligned_cols=91 Identities=21% Similarity=0.139 Sum_probs=69.2
Q ss_pred cCEEEEcCCCC--HHHHHHHHHHHHcCCCcEEEechhhhcccCCCCce-EEEeccccccC-CCcc--ccCHhHHHhhhcc
Q 006319 45 RGIGVHHSGLL--PILKEVIEILFQEGLIKCLFATETFSIGLNMPAKT-VVFTNVRKFDG-DKFR--WISSGEYIQMSGR 118 (650)
Q Consensus 45 ~GIg~hH~gl~--~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~-VVi~~~~k~dg-~~~~--~~~~~e~~qm~GR 118 (650)
..|...|+.+. +..++.+...|++|.++|||+|..++.|+|+|..+ |+|.+....-. .+++ .-....|+|++||
T Consensus 453 ~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GR 532 (679)
T PRK05580 453 ARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGR 532 (679)
T ss_pred CcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhh
Confidence 36888999997 46789999999999999999999999999999966 44454321100 0000 1135789999999
Q ss_pred CCCCCCCCceEEEEeecCC
Q 006319 119 AGRRGIDERGICILMVDDK 137 (650)
Q Consensus 119 AGR~g~d~~G~~ii~~~~~ 137 (650)
|||.+ ..|.+++.+...
T Consensus 533 agR~~--~~g~viiqT~~p 549 (679)
T PRK05580 533 AGRAE--KPGEVLIQTYHP 549 (679)
T ss_pred ccCCC--CCCEEEEEeCCC
Confidence 99987 689999887765
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.99 E-value=1e-05 Score=94.75 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCccCCCc------hhHHhHHHHhc---cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEe
Q 006319 6 LTEDDEKVNIETIFWSAMDMLSDDDKKL------PQVSNILPLLK---RGIGVHHSGLLPILKEVIEILFQEGLIKCLFA 76 (650)
Q Consensus 6 ~~~~~e~~~i~~~~~~~i~~l~~~d~~~------~~~~~l~~~l~---~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLva 76 (650)
|.|.++| ...+++.....-....+.+ .+...+...|. ......||.+...++.+|...++.|. |+||
T Consensus 419 ~~t~~~K--~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIA 494 (796)
T PRK12906 419 YPTLDSK--FNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIA 494 (796)
T ss_pred EcCHHHH--HHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEE
Confidence 4455554 3455555433222222222 23344444443 34578899999999999999998887 9999
Q ss_pred chhhhcccCCC---Cce-----EEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 77 TETFSIGLNMP---AKT-----VVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 77 T~tla~Gin~p---a~~-----VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
|+.++||.|++ ... .||. ..+|-+...|.|+.|||||.| ..|.+.++.+-.
T Consensus 495 TnmAGRGtDI~l~~~V~~~GGLhVI~--------te~pes~ri~~Ql~GRtGRqG--~~G~s~~~~sle 553 (796)
T PRK12906 495 TNMAGRGTDIKLGPGVKELGGLAVIG--------TERHESRRIDNQLRGRSGRQG--DPGSSRFYLSLE 553 (796)
T ss_pred eccccCCCCCCCCcchhhhCCcEEEe--------eecCCcHHHHHHHhhhhccCC--CCcceEEEEecc
Confidence 99999999996 333 4454 225889999999999999999 677777776654
No 96
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=97.92 E-value=2.3e-05 Score=90.25 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=65.7
Q ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEE
Q 006319 51 HSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGIC 130 (650)
Q Consensus 51 H~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ 130 (650)
-.||++.....+...|++|.++|||||+....|+|+|..++||. ||- --++--.+|+.|| ||. ..|.+
T Consensus 455 ~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc----Yd~----~snpIrmIQrrGR-gRa---~ns~~ 522 (746)
T KOG0354|consen 455 STGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC----YDY----SSNPIRMVQRRGR-GRA---RNSKC 522 (746)
T ss_pred ccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE----ecC----CccHHHHHHHhcc-ccc---cCCeE
Confidence 36999999999999999999999999999999999999999998 552 2357889999999 998 48888
Q ss_pred EEeecCC
Q 006319 131 ILMVDDK 137 (650)
Q Consensus 131 ii~~~~~ 137 (650)
++++.+.
T Consensus 523 vll~t~~ 529 (746)
T KOG0354|consen 523 VLLTTGS 529 (746)
T ss_pred EEEEcch
Confidence 8888744
No 97
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.90 E-value=2e-05 Score=84.43 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=69.5
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCC
Q 006319 46 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGID 125 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d 125 (650)
..-..||..-|.+|..-.+.|+.+.++.|+||+..|+|+|+...-.+|+-+ .|-+-..|.||+||+||.-
T Consensus 534 scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invt--------lpd~k~nyvhrigrvgrae-- 603 (725)
T KOG0349|consen 534 SCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVT--------LPDDKTNYVHRIGRVGRAE-- 603 (725)
T ss_pred eeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEe--------cCcccchhhhhhhccchhh--
Confidence 356789999999999999999999999999999999999999877777644 3556789999999999987
Q ss_pred CceEEEEeecCC
Q 006319 126 ERGICILMVDDK 137 (650)
Q Consensus 126 ~~G~~ii~~~~~ 137 (650)
..|.+|-++...
T Consensus 604 rmglaislvat~ 615 (725)
T KOG0349|consen 604 RMGLAISLVATV 615 (725)
T ss_pred hcceeEEEeecc
Confidence 667777665544
No 98
>PRK09694 helicase Cas3; Provisional
Probab=97.90 E-value=3.9e-05 Score=91.63 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=55.5
Q ss_pred CEEEEcCCCCHHHHHHH----HHHH-HcCC---CcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhc
Q 006319 46 GIGVHHSGLLPILKEVI----EILF-QEGL---IKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSG 117 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~v----e~lF-~~g~---i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~G 117 (650)
.+..+||.+.+.+|..+ .+.| ++|. .+|||||.++++|+|++. .++|.+. .+.+.|+||+|
T Consensus 589 ~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~-DvlItdl----------aPidsLiQRaG 657 (878)
T PRK09694 589 DIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLDF-DWLITQL----------CPVDLLFQRLG 657 (878)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecCC-CeEEECC----------CCHHHHHHHHh
Confidence 48999999999999654 4467 6665 479999999999999987 5666632 34689999999
Q ss_pred cCCCCCC
Q 006319 118 RAGRRGI 124 (650)
Q Consensus 118 RAGR~g~ 124 (650)
|+||.+.
T Consensus 658 R~~R~~~ 664 (878)
T PRK09694 658 RLHRHHR 664 (878)
T ss_pred ccCCCCC
Confidence 9999986
No 99
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.80 E-value=0.00034 Score=83.05 Aligned_cols=91 Identities=20% Similarity=0.167 Sum_probs=69.1
Q ss_pred HHhHHHHhc-cC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCce-E------EEeccccccCCCcc
Q 006319 36 VSNILPLLK-RG--IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKT-V------VFTNVRKFDGDKFR 105 (650)
Q Consensus 36 ~~~l~~~l~-~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~-V------Vi~~~~k~dg~~~~ 105 (650)
...|...|. .| ....|+ .+..|+.....|+.|...|+|||+..+||+|++-.. | .+.++ .+
T Consensus 611 sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgt-------er 681 (1025)
T PRK12900 611 SETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGS-------ER 681 (1025)
T ss_pred HHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCC-------CC
Confidence 344555553 34 467776 577999999999999999999999999999999421 2 22222 24
Q ss_pred ccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 106 WISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 106 ~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+-+...|.|+.|||||.| ..|.++++.+..
T Consensus 682 hes~Rid~Ql~GRtGRqG--dpGsS~ffvSle 711 (1025)
T PRK12900 682 HESRRIDRQLRGRAGRQG--DPGESVFYVSLE 711 (1025)
T ss_pred CchHHHHHHHhhhhhcCC--CCcceEEEechh
Confidence 678888999999999999 678887777665
No 100
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.80 E-value=3.7e-05 Score=84.75 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=66.2
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEe-ccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 46 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFT-NVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~-~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
.|..+.||.+..+|+.||.-.=.|.+.-++||..+..|||+..-.-|++ |- |++.+.++|.+|||||+..
T Consensus 559 ~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF---------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 559 AITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF---------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred HHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccC---------chhHHHHHHHhccccccCC
Confidence 4567889999999999999988999999999999999999999555554 32 8899999999999999996
Q ss_pred CCceEEEE
Q 006319 125 DERGICIL 132 (650)
Q Consensus 125 d~~G~~ii 132 (650)
+.-...+.
T Consensus 630 ~SLavyva 637 (1034)
T KOG4150|consen 630 PSLAVYVA 637 (1034)
T ss_pred CceEEEEE
Confidence 65554443
No 101
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.65 E-value=2.4e-05 Score=78.81 Aligned_cols=59 Identities=32% Similarity=0.580 Sum_probs=51.2
Q ss_pred EEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHH
Q 006319 74 LFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPST 142 (650)
Q Consensus 74 LvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~ 142 (650)
++||+.|++|+|+...+++|+ || .|-++..|+|++|||||.| ..|.+|.+.++..+...
T Consensus 302 ~vat~lfgrgmdiervNi~~N----Yd----mp~~~DtYlHrv~rAgrfG--tkglaitfvs~e~da~i 360 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFN----YD----MPEDSDTYLHRVARAGRFG--TKGLAITFVSDENDAKI 360 (387)
T ss_pred hHHhhhhccccCcccceeeec----cC----CCCCchHHHHHhhhhhccc--cccceeehhcchhhHHH
Confidence 899999999999999999998 55 3788999999999999999 78999888877644333
No 102
>PRK09401 reverse gyrase; Reviewed
Probab=97.55 E-value=0.00015 Score=89.56 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=44.1
Q ss_pred HHhHHHHh---ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEe----chhhhcccCCCC--ceEEEecccc
Q 006319 36 VSNILPLL---KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA----TETFSIGLNMPA--KTVVFTNVRK 98 (650)
Q Consensus 36 ~~~l~~~l---~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLva----T~tla~Gin~pa--~~VVi~~~~k 98 (650)
...+.+.| ...++..||+| ++.+ +.|++|.++|||| |+.++||||+|. +.||+.+..+
T Consensus 344 ae~l~~~L~~~gi~v~~~hg~l----~~~l-~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 344 AEELAEYLEDLGINAELAISGF----ERKF-EKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHHHHHHCCCcEEEEeCcH----HHHH-HHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 33444444 34568899999 3334 9999999999999 578999999998 5778877665
No 103
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.45 E-value=0.0001 Score=79.09 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=72.8
Q ss_pred hHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC-ceEEEeccccccCCCccccCHhHHH
Q 006319 35 QVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA-KTVVFTNVRKFDGDKFRWISSGEYI 113 (650)
Q Consensus 35 ~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa-~~VVi~~~~k~dg~~~~~~~~~e~~ 113 (650)
.+..+......++...+|.|.+..|..-...|..|...+|+.|+..++|+|+|- .+||-.+. |-+..-|+
T Consensus 276 ~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~---------p~~~klFv 346 (529)
T KOG0337|consen 276 YVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF---------PPDDKLFV 346 (529)
T ss_pred HHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC---------CCCCceEE
Confidence 344444444567778999999999999999999999999999999999999998 55555433 66788899
Q ss_pred hhhccCCCCCCCCceEEEEeecCC
Q 006319 114 QMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 114 qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
||+||+.|+| ..|.+|-++.+.
T Consensus 347 hRVgr~arag--rtg~aYs~V~~~ 368 (529)
T KOG0337|consen 347 HRVGRVARAG--RTGRAYSLVAST 368 (529)
T ss_pred EEecchhhcc--ccceEEEEEecc
Confidence 9999999999 555555554443
No 104
>PRK14701 reverse gyrase; Provisional
Probab=97.30 E-value=0.00031 Score=88.94 Aligned_cols=87 Identities=26% Similarity=0.279 Sum_probs=61.5
Q ss_pred HhHHHHhc---cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEech----hhhcccCCCC--ceEEEeccccccCC-----
Q 006319 37 SNILPLLK---RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE----TFSIGLNMPA--KTVVFTNVRKFDGD----- 102 (650)
Q Consensus 37 ~~l~~~l~---~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~----tla~Gin~pa--~~VVi~~~~k~dg~----- 102 (650)
..+.+.|. ..++.+||+ |..+.+.|++|.++|||||+ .++||||+|. +-||+.|..+|...
T Consensus 347 e~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~ 421 (1638)
T PRK14701 347 EEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLED 421 (1638)
T ss_pred HHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcc
Confidence 34444443 345788986 88899999999999999995 7899999997 67888888764321
Q ss_pred --CccccCHhHHHhhhccCCCCCCCCce
Q 006319 103 --KFRWISSGEYIQMSGRAGRRGIDERG 128 (650)
Q Consensus 103 --~~~~~~~~e~~qm~GRAGR~g~d~~G 128 (650)
.+..+.....++|.|||||.|....+
T Consensus 422 ~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 422 PTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred cchhhhhcchHHHHHhhhhcccCCcchh
Confidence 11111233456778999999954333
No 105
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.20 E-value=0.0015 Score=79.45 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=68.2
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcC---CCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEG---LIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGR 121 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g---~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR 121 (650)
+++..+||+++...|..+...|++. ..-+|++|.+.+.|||+.+.++||. || .+-+|....|.+|||-|
T Consensus 512 ~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi----yD----~dWNP~~d~QAidRaHR 583 (1033)
T PLN03142 512 YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL----YD----SDWNPQVDLQAQDRAHR 583 (1033)
T ss_pred CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE----eC----CCCChHHHHHHHHHhhh
Confidence 4567789999999999999999753 3467899999999999998665555 33 26789999999999999
Q ss_pred CCCCCceEEEEeecCC
Q 006319 122 RGIDERGICILMVDDK 137 (650)
Q Consensus 122 ~g~d~~G~~ii~~~~~ 137 (650)
-|....-.++-++...
T Consensus 584 IGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 584 IGQKKEVQVFRFCTEY 599 (1033)
T ss_pred cCCCceEEEEEEEeCC
Confidence 9987766665555444
No 106
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0016 Score=72.92 Aligned_cols=79 Identities=23% Similarity=0.205 Sum_probs=64.2
Q ss_pred HHhHHHHhccC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHH
Q 006319 36 VSNILPLLKRG--IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYI 113 (650)
Q Consensus 36 ~~~l~~~l~~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~ 113 (650)
...+...+..+ +....|..++.+|..+...|+.|.+++||++..+..|+|+|...++|.-. ..-++..|.
T Consensus 296 a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~--------~t~S~~~~~ 367 (442)
T COG1061 296 AYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR--------PTGSRRLFI 367 (442)
T ss_pred HHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC--------CCCcHHHHH
Confidence 34444444432 35889999999999999999999999999999999999999977777632 134789999
Q ss_pred hhhccCCCC
Q 006319 114 QMSGRAGRR 122 (650)
Q Consensus 114 qm~GRAGR~ 122 (650)
||+||.=|+
T Consensus 368 Q~lGR~LR~ 376 (442)
T COG1061 368 QRLGRGLRP 376 (442)
T ss_pred HHhhhhccC
Confidence 999999994
No 107
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.0015 Score=72.42 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCCccCCCchh--HH----hHHHHh---ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcc
Q 006319 13 VNIETIFWSAMDMLSDDDKKLPQ--VS----NILPLL---KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIG 83 (650)
Q Consensus 13 ~~i~~~~~~~i~~l~~~d~~~~~--~~----~l~~~l---~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~G 83 (650)
.+|+.++.+.-.+.....+.+-. -+ .|-+++ .-.+.|.|+.+.-.+|-.|....+.|.++|||--..|-.|
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREG 509 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhcc
Confidence 35666666665555544444322 11 222333 2346799999999999999999999999999999999999
Q ss_pred cCCCC-ceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 84 LNMPA-KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 84 in~pa-~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+|+|- .-|.|.+..| +.-.-+-..++|-+|||.|. ..|.||++++.-
T Consensus 510 LDiPEVsLVAIlDADK----eGFLRse~SLIQtIGRAARN---~~GkvIlYAD~i 557 (663)
T COG0556 510 LDLPEVSLVAILDADK----EGFLRSERSLIQTIGRAARN---VNGKVILYADKI 557 (663)
T ss_pred CCCcceeEEEEeecCc----cccccccchHHHHHHHHhhc---cCCeEEEEchhh
Confidence 99998 4567777643 22244678899999999998 489999987764
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.12 E-value=0.00067 Score=80.56 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=68.3
Q ss_pred CEEEEcCCCCHHHHHHHHHHH----HcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCC
Q 006319 46 GIGVHHSGLLPILKEVIEILF----QEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGR 121 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF----~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR 121 (650)
.+...||.+...+|...++.. +.+.-.|+|||.....|||+... ++|+. +-+++.++||+||++|
T Consensus 466 ~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd-~mITe----------~aPidSLIQR~GRv~R 534 (733)
T COG1203 466 KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFD-VLITE----------LAPIDSLIQRAGRVNR 534 (733)
T ss_pred CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccC-eeeec----------CCCHHHHHHHHHHHhh
Confidence 478899999999999988843 56789999999999999999854 55653 3567899999999999
Q ss_pred CCCCCceEEEEeecCC
Q 006319 122 RGIDERGICILMVDDK 137 (650)
Q Consensus 122 ~g~d~~G~~ii~~~~~ 137 (650)
.|.+..|.+++.....
T Consensus 535 ~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 535 HGKKENGKIYVYNDEE 550 (733)
T ss_pred cccccCCceeEeeccc
Confidence 9988888888876655
No 109
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.12 E-value=0.00079 Score=83.33 Aligned_cols=57 Identities=26% Similarity=0.298 Sum_probs=43.4
Q ss_pred HHhHHHHhc---cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEec----hhhhcccCCCC--ceEEEecc
Q 006319 36 VSNILPLLK---RGIGVHHSGLLPILKEVIEILFQEGLIKCLFAT----ETFSIGLNMPA--KTVVFTNV 96 (650)
Q Consensus 36 ~~~l~~~l~---~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT----~tla~Gin~pa--~~VVi~~~ 96 (650)
...+.+.|. ..++..||+|+. .+.+.|++|.++||||| +.++||||+|. +.||+.+.
T Consensus 342 a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~ 407 (1171)
T TIGR01054 342 AEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGV 407 (1171)
T ss_pred HHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECC
Confidence 344555554 345799999973 57799999999999995 78999999998 55666443
No 110
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.10 E-value=0.00082 Score=76.17 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCccCCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccC
Q 006319 6 LTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLN 85 (650)
Q Consensus 6 ~~~~~e~~~i~~~~~~~i~~l~~~d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin 85 (650)
||..+|-+...+++.+....+.+.... -|-..||+|++++...|..---.|.=||++||...+--|.
T Consensus 265 LtGqeEIe~~~~~l~e~~~~~~~~~~~-------------~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlT 331 (674)
T KOG0922|consen 265 LTGQEEIEAACELLRERAKSLPEDCPE-------------LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLT 331 (674)
T ss_pred eCCHHHHHHHHHHHHHHhhhccccCcc-------------eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEE
Confidence 455667777777776665544433221 2346799999999988887777899999999999999999
Q ss_pred CCCceEEEec----cccccCCC------ccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 86 MPAKTVVFTN----VRKFDGDK------FRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 86 ~pa~~VVi~~----~~k~dg~~------~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+|....||.+ .++|+++. -.|++-..-.||+|||||.| .|.|+=++...
T Consensus 332 I~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~ 390 (674)
T KOG0922|consen 332 IDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTES 390 (674)
T ss_pred ecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHH
Confidence 9998888876 35777753 24668899999999999997 99999876554
No 111
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.85 E-value=0.0083 Score=68.03 Aligned_cols=117 Identities=21% Similarity=0.188 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCccCCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccC
Q 006319 6 LTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLN 85 (650)
Q Consensus 6 ~~~~~e~~~i~~~~~~~i~~l~~~d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin 85 (650)
||-.+|-+...+.+.+.+.+|...-+.+ =|...|+.|+......|.+---.|.=||++||....-.+.
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~el------------iv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlT 547 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIREL------------IVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLT 547 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceE------------EEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhcee
Confidence 3445665666666666655555322221 2456799999998888877667899999999999999999
Q ss_pred CCCceEEEecc----ccccCCC------ccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 86 MPAKTVVFTNV----RKFDGDK------FRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 86 ~pa~~VVi~~~----~k~dg~~------~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
++....||..- ..|+++. ..|++-+.-.||+|||||.| .|.|+=+....
T Consensus 548 IdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~ 606 (902)
T KOG0923|consen 548 IDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAW 606 (902)
T ss_pred ecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechh
Confidence 99988887642 3466542 23567788999999999998 89999876654
No 112
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.57 E-value=0.0046 Score=73.46 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCccCCCc------hhHHhHHHHhc-cC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEE
Q 006319 5 DLTEDDEKVNIETIFWSAMDMLSDDDKKL------PQVSNILPLLK-RG--IGVHHSGLLPILKEVIEILFQEGLIKCLF 75 (650)
Q Consensus 5 ~~~~~~e~~~i~~~~~~~i~~l~~~d~~~------~~~~~l~~~l~-~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLv 75 (650)
-+.|..+| ...++++..+.-....+.+ .....+..+|. .| ....||.+...++++|..+|+.| .|+|
T Consensus 422 v~~t~~~k--~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtI 497 (896)
T PRK13104 422 VYLTQADK--FQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTI 497 (896)
T ss_pred EEcCHHHH--HHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEE
Confidence 35565555 3455555544333333322 22334444443 34 57899999999999999999999 5999
Q ss_pred echhhhcccCCC
Q 006319 76 ATETFSIGLNMP 87 (650)
Q Consensus 76 aT~tla~Gin~p 87 (650)
||+.+++|+|+.
T Consensus 498 ATNmAGRGtDI~ 509 (896)
T PRK13104 498 ATNMAGRGTDIV 509 (896)
T ss_pred eccCccCCccee
Confidence 999999999986
No 113
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=96.55 E-value=0.0048 Score=76.11 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=53.0
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCC-cEEEechhhhcccCCCC-ceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLI-KCLFATETFSIGLNMPA-KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i-~vLvaT~tla~Gin~pa-~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
+...||... .+..+...|++|.. +|+|+++.+..|+|+|. .+||+.. .+-+...|+||+||+.|...
T Consensus 734 v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~r---------pvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 734 VIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLR---------RVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred eEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEec---------CCCCHHHHHHHHhhhccCCc
Confidence 345677765 46778899999987 79999999999999997 4555542 24578999999999999753
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=96.48 E-value=0.0048 Score=73.19 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=37.8
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC
Q 006319 46 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA 88 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa 88 (650)
...+.||.++..++++|...|+.|. |+|||+.+++|.|+.-
T Consensus 475 ~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkL 515 (908)
T PRK13107 475 PHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVL 515 (908)
T ss_pred CeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceec
Confidence 4578999999999999999999998 9999999999999873
No 115
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=96.35 E-value=0.0098 Score=70.53 Aligned_cols=52 Identities=19% Similarity=0.055 Sum_probs=41.6
Q ss_pred HHhHHHHhc-cC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCc
Q 006319 36 VSNILPLLK-RG--IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAK 89 (650)
Q Consensus 36 ~~~l~~~l~-~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~ 89 (650)
...+...|. .| ....||. ...|+.....|+.|...|+|||+.++||+|++-.
T Consensus 443 se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~Lg 497 (830)
T PRK12904 443 SELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLG 497 (830)
T ss_pred HHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCC
Confidence 344444443 34 5678885 7789999999999999999999999999999864
No 116
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.0045 Score=73.65 Aligned_cols=87 Identities=25% Similarity=0.269 Sum_probs=71.6
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecc----ccccCCC------ccccCHhHHHhhh
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV----RKFDGDK------FRWISSGEYIQMS 116 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~----~k~dg~~------~~~~~~~e~~qm~ 116 (650)
|--.||.|++.+...|.+--..|.=||++||+...=++.+|...+||.+- .+||... ..+++-....||+
T Consensus 290 i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRa 369 (845)
T COG1643 290 ILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRA 369 (845)
T ss_pred EeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhc
Confidence 56779999999988876665666666999999999999999999999863 4676642 3466789999999
Q ss_pred ccCCCCCCCCceEEEEeecC
Q 006319 117 GRAGRRGIDERGICILMVDD 136 (650)
Q Consensus 117 GRAGR~g~d~~G~~ii~~~~ 136 (650)
|||||-+ .|.||=++++
T Consensus 370 GRAGR~~---pGicyRLyse 386 (845)
T COG1643 370 GRAGRTG---PGICYRLYSE 386 (845)
T ss_pred cccccCC---CceEEEecCH
Confidence 9999997 9999987665
No 117
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.98 E-value=0.017 Score=65.70 Aligned_cols=97 Identities=26% Similarity=0.312 Sum_probs=73.4
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEec-c---ccccCCC------ccccCHhHHHhhh
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTN-V---RKFDGDK------FRWISSGEYIQMS 116 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~-~---~k~dg~~------~~~~~~~e~~qm~ 116 (650)
|--.++.|+......|.+--..|.=|++|||....-.+.+|....||.. . +-|+.+. ..|++-..-.|++
T Consensus 600 vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRa 679 (1042)
T KOG0924|consen 600 VLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRA 679 (1042)
T ss_pred EEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhc
Confidence 5567899998877777666667889999999999999999997777653 2 3455432 3467788899999
Q ss_pred ccCCCCCCCCceEEEEeecCCCcHHHHHHHhcC
Q 006319 117 GRAGRRGIDERGICILMVDDKMEPSTAKMMLKG 149 (650)
Q Consensus 117 GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~ 149 (650)
|||||.| .|.|+=++... .+...|+..
T Consensus 680 GRAGRt~---pG~cYRlYTe~---ay~~eml~s 706 (1042)
T KOG0924|consen 680 GRAGRTG---PGTCYRLYTED---AYKNEMLPS 706 (1042)
T ss_pred cccCCCC---Ccceeeehhhh---HHHhhcccC
Confidence 9999997 89998876553 445556543
No 118
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.027 Score=66.14 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCCcEEEechhhhcccCCCCce-EEEeccc--cccCCCccc--cCHhHHHhhhccCCCCCCCCceEEEEe
Q 006319 59 KEVIEILFQEGLIKCLFATETFSIGLNMPAKT-VVFTNVR--KFDGDKFRW--ISSGEYIQMSGRAGRRGIDERGICILM 133 (650)
Q Consensus 59 R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~-VVi~~~~--k~dg~~~~~--~~~~e~~qm~GRAGR~g~d~~G~~ii~ 133 (650)
-+.....|.+|.++||+-|..++-|.|+|..+ |.+.+.. -+.+ .+|- -+..-++|-+|||||.+ ..|.++|-
T Consensus 523 ~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~-DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQ 599 (730)
T COG1198 523 LEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSP-DFRASERTFQLLMQVAGRAGRAG--KPGEVVIQ 599 (730)
T ss_pred HHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCC-CcchHHHHHHHHHHHHhhhccCC--CCCeEEEE
Confidence 34556789999999999999999999999955 4444431 1111 1111 13567899999999997 68999988
Q ss_pred ecCCCcHHHHHHHh
Q 006319 134 VDDKMEPSTAKMML 147 (650)
Q Consensus 134 ~~~~~~~~~~~~~~ 147 (650)
+..+ +...+..+.
T Consensus 600 T~~P-~hp~i~~~~ 612 (730)
T COG1198 600 TYNP-DHPAIQALK 612 (730)
T ss_pred eCCC-CcHHHHHHH
Confidence 7776 334444433
No 119
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.31 E-value=0.046 Score=66.31 Aligned_cols=100 Identities=24% Similarity=0.290 Sum_probs=69.5
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC---ceEEEeccccccCC-----------------Ccc
Q 006319 46 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA---KTVVFTNVRKFDGD-----------------KFR 105 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa---~~VVi~~~~k~dg~-----------------~~~ 105 (650)
|+.++..|.. ..|..+.+.|++|.-.||++|..|+.|||+|. +.|||.++.+-.+. .+.
T Consensus 702 ~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~ 780 (850)
T TIGR01407 702 GYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFY 780 (850)
T ss_pred CceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchH
Confidence 5555665654 57888999999999999999999999999998 45778776532211 111
Q ss_pred ----ccCHhHHHhhhccCCCCCCCCceEEEEeecCC-CcHHHHHHHhc
Q 006319 106 ----WISSGEYIQMSGRAGRRGIDERGICILMVDDK-MEPSTAKMMLK 148 (650)
Q Consensus 106 ----~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~~~~~ 148 (650)
|...-.+.|.+||.=|...| .|.++++ +.. ....+-+.++.
T Consensus 781 ~~~lP~A~~~l~Qa~GRlIRs~~D-~G~v~il-D~R~~~~~Yg~~~~~ 826 (850)
T TIGR01407 781 DYVLPMAIIRLRQALGRLIRREND-RGSIVIL-DRRLVGKRYGKRFEK 826 (850)
T ss_pred HhhHHHHHHHHHHhhccccccCCc-eEEEEEE-ccccccchHHHHHHH
Confidence 11346789999999998765 7876665 555 33444455554
No 120
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.24 E-value=0.061 Score=50.71 Aligned_cols=88 Identities=20% Similarity=0.195 Sum_probs=61.7
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCC-CcEEEechhhhcccCCCC---ceEEEeccccccCC------------------
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGL-IKCLFATETFSIGLNMPA---KTVVFTNVRKFDGD------------------ 102 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~-i~vLvaT~tla~Gin~pa---~~VVi~~~~k~dg~------------------ 102 (650)
.+.-+...+..+.+...+.+.|++.. -.||++|..++.|||+|. +.|||.+..+....
T Consensus 22 ~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~ 101 (141)
T smart00492 22 KNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIR 101 (141)
T ss_pred cCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 34566677777766777777787543 379999988999999997 57899886533111
Q ss_pred Ccc----ccCHhHHHhhhccCCCCCCCCceEEEEe
Q 006319 103 KFR----WISSGEYIQMSGRAGRRGIDERGICILM 133 (650)
Q Consensus 103 ~~~----~~~~~e~~qm~GRAGR~g~d~~G~~ii~ 133 (650)
... |.....+.|.+||+=|...| .|.++++
T Consensus 102 ~~~~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 102 PFDFVSLPDAMRTLAQCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred chhHHHHHHHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 111 11246788999999988755 7866654
No 121
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=94.54 E-value=0.032 Score=66.64 Aligned_cols=88 Identities=23% Similarity=0.342 Sum_probs=72.8
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecc----ccccCCC------ccccCHhHHHhhh
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV----RKFDGDK------FRWISSGEYIQMS 116 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~----~k~dg~~------~~~~~~~e~~qm~ 116 (650)
|-..|+.|+..+.+.|..-.-.|.=||++||...+-.|.+|+...||..- +.||... -.|++-..-.||.
T Consensus 447 ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~ 526 (924)
T KOG0920|consen 447 ILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRR 526 (924)
T ss_pred EEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhc
Confidence 44669999999999998888899999999999999999999988777653 4677642 2356778999999
Q ss_pred ccCCCCCCCCceEEEEeecCC
Q 006319 117 GRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 117 GRAGR~g~d~~G~~ii~~~~~ 137 (650)
|||||-. .|.||=+....
T Consensus 527 GRAGRv~---~G~cy~L~~~~ 544 (924)
T KOG0920|consen 527 GRAGRVR---PGICYHLYTRS 544 (924)
T ss_pred ccccCcc---CCeeEEeechh
Confidence 9999995 89998776554
No 122
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.67 E-value=0.25 Score=46.59 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=56.0
Q ss_pred EEEcCCCCHHHHHHHHHHHHcCCC---cEEEechh--hhcccCCCC---ceEEEeccccccCC--------------C--
Q 006319 48 GVHHSGLLPILKEVIEILFQEGLI---KCLFATET--FSIGLNMPA---KTVVFTNVRKFDGD--------------K-- 103 (650)
Q Consensus 48 g~hH~gl~~~~R~~ve~lF~~g~i---~vLvaT~t--la~Gin~pa---~~VVi~~~~k~dg~--------------~-- 103 (650)
-++..+..+.....+...|++..- .||+++.. ++.|||+|. +.|||.+..+.... .
T Consensus 22 ~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~ 101 (142)
T smart00491 22 PVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGI 101 (142)
T ss_pred eEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCC
Confidence 344444444455666777876432 59999988 999999998 68999887633221 0
Q ss_pred --c----cccCHhHHHhhhccCCCCCCCCceEEEEe
Q 006319 104 --F----RWISSGEYIQMSGRAGRRGIDERGICILM 133 (650)
Q Consensus 104 --~----~~~~~~e~~qm~GRAGR~g~d~~G~~ii~ 133 (650)
. .+.....+.|.+||+=|...| .|.++++
T Consensus 102 ~~~~~~~~~~a~~~~~Qa~GR~iR~~~D-~g~i~l~ 136 (142)
T smart00491 102 RPFDEVYLFDAMRALAQAIGRAIRHKND-YGVVVLL 136 (142)
T ss_pred CcHHHHHHHHHHHHHHHHhCccccCccc-eEEEEEE
Confidence 0 011246788999999998854 7866654
No 123
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=92.16 E-value=0.084 Score=61.36 Aligned_cols=88 Identities=26% Similarity=0.312 Sum_probs=71.1
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecc----ccccCCC------ccccCHhHHHhhh
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNV----RKFDGDK------FRWISSGEYIQMS 116 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~----~k~dg~~------~~~~~~~e~~qm~ 116 (650)
|--.++-|+......|..---+|.=-++|||....-.+.+|....|+..- +.||... -.|++-..--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 45668889998888887777789888999999999999999977777653 4676542 3466777778999
Q ss_pred ccCCCCCCCCceEEEEeecCC
Q 006319 117 GRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 117 GRAGR~g~d~~G~~ii~~~~~ 137 (650)
|||||-| .|+||=++++.
T Consensus 687 GRAGRtg---pGHcYRLYSSA 704 (1172)
T KOG0926|consen 687 GRAGRTG---PGHCYRLYSSA 704 (1172)
T ss_pred cccCCCC---CCceeehhhhH
Confidence 9999997 89999887765
No 124
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.84 E-value=0.64 Score=57.03 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=69.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC---ceEEEeccccccC-----------------CCccc
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA---KTVVFTNVRKFDG-----------------DKFRW 106 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa---~~VVi~~~~k~dg-----------------~~~~~ 106 (650)
+-+.--|+....|..+...|+++.=.||++|..|..|||+|. ..|||.++.+-.+ ..+..
T Consensus 781 ~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~ 860 (928)
T PRK08074 781 YVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQE 860 (928)
T ss_pred ceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhh
Confidence 434444665566888999999887889999999999999997 6788888653211 11111
Q ss_pred ----cCHhHHHhhhccCCCCCCCCceEEEEeecCC-CcHHHHHHHhcC
Q 006319 107 ----ISSGEYIQMSGRAGRRGIDERGICILMVDDK-MEPSTAKMMLKG 149 (650)
Q Consensus 107 ----~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~~~~~~ 149 (650)
...-.+.|.+||.=|...| .|.++++ ++. ....+-+.++..
T Consensus 861 ~~lP~A~~~lkQg~GRlIRs~~D-~G~v~il-D~R~~~k~Yg~~~l~s 906 (928)
T PRK08074 861 LSLPQAVLRFKQGFGRLIRTETD-RGTVFVL-DRRLTTTSYGKYFLES 906 (928)
T ss_pred hhhHHHHHHHHhhhhhhcccCCc-eEEEEEe-cCccccchHHHHHHHh
Confidence 1245679999999998865 7866554 555 344455666544
No 125
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=91.43 E-value=0.32 Score=47.00 Aligned_cols=88 Identities=26% Similarity=0.335 Sum_probs=55.5
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEech--hhhcccCCC---CceEEEeccccccCCC-----------------
Q 006319 46 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATE--TFSIGLNMP---AKTVVFTNVRKFDGDK----------------- 103 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~--tla~Gin~p---a~~VVi~~~~k~dg~~----------------- 103 (650)
++.++..+ ...+..+.+.|+++.=.||+|+. .+..|||+| .+.|||.+..+-....
T Consensus 37 ~~~v~~q~--~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~ 114 (167)
T PF13307_consen 37 GIPVFVQG--SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNP 114 (167)
T ss_dssp TSCEEEST--CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTC
T ss_pred cceeeecC--cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccc
Confidence 33444443 55777888889999889999999 999999999 4789999876422210
Q ss_pred c----cccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 104 F----RWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 104 ~----~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
. .+.....+.|.+||+=|...| .|.++++ ++.
T Consensus 115 ~~~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~ll-D~R 150 (167)
T PF13307_consen 115 FRDWYLPPAIRKLKQAIGRLIRSEDD-YGVIILL-DSR 150 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHCC--STT--EEEEEEE-SGG
T ss_pred hhhHhhHHHHHHHhhhcCcceeccCC-cEEEEEE-cCc
Confidence 0 011246778999999998754 7877764 554
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=90.92 E-value=0.97 Score=53.51 Aligned_cols=103 Identities=11% Similarity=0.016 Sum_probs=74.9
Q ss_pred chhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcC--CCcEEE-echhhhcccCCCC-ceEEEeccccccCCCccccC
Q 006319 33 LPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEG--LIKCLF-ATETFSIGLNMPA-KTVVFTNVRKFDGDKFRWIS 108 (650)
Q Consensus 33 ~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g--~i~vLv-aT~tla~Gin~pa-~~VVi~~~~k~dg~~~~~~~ 108 (650)
+..+..+..+..+.+-..||.|+..+|+.+..-|.+- ..+|++ +|.+-+.|||+-+ .+||+.+. .-+
T Consensus 608 ldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~---------dWN 678 (776)
T KOG0390|consen 608 LDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP---------DWN 678 (776)
T ss_pred HHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC---------CCC
Confidence 3455666666767788899999999999999999853 335555 4556678999776 66666643 457
Q ss_pred HhHHHhhhccCCCCCCCCceEEEEeecCC-CcHHHHH
Q 006319 109 SGEYIQMSGRAGRRGIDERGICILMVDDK-MEPSTAK 144 (650)
Q Consensus 109 ~~e~~qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~ 144 (650)
|+.=.|.++||=|+|....-++|=+.... .+++.+.
T Consensus 679 Pa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~q 715 (776)
T KOG0390|consen 679 PAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQ 715 (776)
T ss_pred chhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHH
Confidence 78889999999999987776666555443 4444443
No 127
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=90.75 E-value=0.39 Score=58.26 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=58.1
Q ss_pred EEEEcCCCCHHHHHHHHHHH-----------------------H---cCCCcEEEechhhhcccCCCCceEEEecccccc
Q 006319 47 IGVHHSGLLPILKEVIEILF-----------------------Q---EGLIKCLFATETFSIGLNMPAKTVVFTNVRKFD 100 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF-----------------------~---~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~d 100 (650)
+.++|+..+..+|..+|+.. . .+...|+|+|...+.|+|+...-+|..
T Consensus 789 ~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~dfd~~~~~------ 862 (1110)
T TIGR02562 789 LCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDYDWAIAD------ 862 (1110)
T ss_pred EEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecccCCeeeec------
Confidence 67889999999999999643 1 257899999999999999998876665
Q ss_pred CCCccccCHhHHHhhhccCCCCCCCCc
Q 006319 101 GDKFRWISSGEYIQMSGRAGRRGIDER 127 (650)
Q Consensus 101 g~~~~~~~~~e~~qm~GRAGR~g~d~~ 127 (650)
+-+...++|++||+.|.|....
T Consensus 863 -----~~~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 863 -----PSSMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred -----cCcHHHHHHHhhcccccccCCC
Confidence 4578889999999999886543
No 128
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=89.13 E-value=4 Score=48.58 Aligned_cols=90 Identities=26% Similarity=0.324 Sum_probs=60.3
Q ss_pred HHHHHHHHHH----cCCCcEEEechhhhcccCCCC---ceEEEeccccccCC--------------Ccccc-------CH
Q 006319 58 LKEVIEILFQ----EGLIKCLFATETFSIGLNMPA---KTVVFTNVRKFDGD--------------KFRWI-------SS 109 (650)
Q Consensus 58 ~R~~ve~lF~----~g~i~vLvaT~tla~Gin~pa---~~VVi~~~~k~dg~--------------~~~~~-------~~ 109 (650)
.|..+...|+ .|.-.||++|..|..|||+|. +.|||.++.+-.+. +..++ ..
T Consensus 569 ~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~ 648 (697)
T PRK11747 569 PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDAS 648 (697)
T ss_pred hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3556665565 466779999999999999996 77899887532111 11111 23
Q ss_pred hHHHhhhccCCCCCCCCceEEEEeecCC-CcHHHHHHHhcC
Q 006319 110 GEYIQMSGRAGRRGIDERGICILMVDDK-MEPSTAKMMLKG 149 (650)
Q Consensus 110 ~e~~qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~~~~~~ 149 (650)
-.+.|.+||.=|...| .|.++++ ++. ....+-+.++..
T Consensus 649 ~kl~Qg~GRlIRs~~D-~G~i~il-D~R~~~~~Yg~~~l~s 687 (697)
T PRK11747 649 FKLIQAVGRLIRSEQD-RGRVTIL-DRRLLTKRYGKRLLDA 687 (697)
T ss_pred HHHHHHhccccccCCc-eEEEEEE-cccccchhHHHHHHHh
Confidence 5688999999998755 7876654 555 344555666654
No 129
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=89.11 E-value=2.2 Score=50.28 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhhcCCccCCCc---hhH---HhHHHHhccCEE-EEcCCCCHHHHH-HHHHHHHcCCCcEEEechhhh
Q 006319 10 DEKVNIETIFWSAMDMLSDDDKKL---PQV---SNILPLLKRGIG-VHHSGLLPILKE-VIEILFQEGLIKCLFATETFS 81 (650)
Q Consensus 10 ~e~~~i~~~~~~~i~~l~~~d~~~---~~~---~~l~~~l~~GIg-~hH~gl~~~~R~-~ve~lF~~g~i~vLvaT~tla 81 (650)
+.-..+...+.+.+..-. ++.+ |.. +.+.+.+..+.. +.+-......+. .++.-+..|..-++|+|.+|+
T Consensus 462 ~~~~~~~~~i~~~~~~~~--~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~gsf~ 539 (654)
T COG1199 462 ELLAKLAAYLREILKASP--GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKASGEGLILVGGGSFW 539 (654)
T ss_pred HHHHHHHHHHHHHHhhcC--CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHHHhcCCeEEEeecccc
Confidence 444555666666655444 2332 222 333333332222 223333333444 444444455559999999999
Q ss_pred cccCCCC---ceEEEeccccccC-----------------CCcc----ccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 82 IGLNMPA---KTVVFTNVRKFDG-----------------DKFR----WISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 82 ~Gin~pa---~~VVi~~~~k~dg-----------------~~~~----~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
.|||+|. +.|||.+..+-.. ..+. |...-.+.|.+||+=|. .+..|.++++ +..
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~-~~D~G~ivll-D~R 617 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRS-EDDRGVIVLL-DKR 617 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhcccccc-CCCceEEEEe-ccc
Confidence 9999997 5789988753211 1111 22367899999999884 4568988775 554
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.28 E-value=1.8 Score=52.38 Aligned_cols=91 Identities=20% Similarity=0.175 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCcEEEechhhhcccCCCC---ceEEEeccccccC--------------CCcccc---C----HhHHHh
Q 006319 59 KEVIEILFQEGLIKCLFATETFSIGLNMPA---KTVVFTNVRKFDG--------------DKFRWI---S----SGEYIQ 114 (650)
Q Consensus 59 R~~ve~lF~~g~i~vLvaT~tla~Gin~pa---~~VVi~~~~k~dg--------------~~~~~~---~----~~e~~q 114 (650)
+..+.+.|+++.-.||++|..|..|||+|. ..|||.++..-.+ ++..|+ + .--+.|
T Consensus 683 ~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQ 762 (820)
T PRK07246 683 AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQ 762 (820)
T ss_pred HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHH
Confidence 344677799988889999999999999973 5678887653211 111121 1 356889
Q ss_pred hhccCCCCCCCCceEEEEeecCC-CcHHHHHHHhcCCC
Q 006319 115 MSGRAGRRGIDERGICILMVDDK-MEPSTAKMMLKGSA 151 (650)
Q Consensus 115 m~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~~~~~~~~ 151 (650)
-+||.=|...| .|.+++ .++. ....+-+.+++.-|
T Consensus 763 g~GRLIRs~~D-~Gvv~i-lD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 763 AIGRTMRREDQ-KSAVLI-LDRRILTKSYGKQILASLA 798 (820)
T ss_pred HhcccccCCCC-cEEEEE-ECCcccccHHHHHHHHhCC
Confidence 99999988754 887655 4655 34455566665433
No 131
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=87.38 E-value=1.3 Score=52.41 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=51.2
Q ss_pred HHHHHHHHc-CCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCC-CC-CCceEEEEeecC
Q 006319 60 EVIEILFQE-GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRR-GI-DERGICILMVDD 136 (650)
Q Consensus 60 ~~ve~lF~~-g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~-g~-d~~G~~ii~~~~ 136 (650)
+.+...|++ +.+++||+++-+.-|.|.|.-++++.+ +|+....++|++||+-|. .. ...|.++-+...
T Consensus 580 ~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld---------Kplk~h~LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 580 YKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD---------KPLKYHGLLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred HHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe---------ccccccHHHHHHHHhccccCCCCCCEEEEECcCh
Confidence 356667865 789999999999999999997777764 366666799999999994 32 235666555443
No 132
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=86.08 E-value=1.9 Score=52.90 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=83.2
Q ss_pred HHHHhhcCCccCCCchhHHhHHHHhc--------cC--EEEEcCCCCHHHHHHHHHHHHc---CCCcEEEechhhhcccC
Q 006319 19 FWSAMDMLSDDDKKLPQVSNILPLLK--------RG--IGVHHSGLLPILKEVIEILFQE---GLIKCLFATETFSIGLN 85 (650)
Q Consensus 19 ~~~~i~~l~~~d~~~~~~~~l~~~l~--------~G--Ig~hH~gl~~~~R~~ve~lF~~---g~i~vLvaT~tla~Gin 85 (650)
++..+-+|.+....+-.+++|..+|. +| .--.-|++....|+....-|.. ...-.|.||.+-+.|||
T Consensus 688 LDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGIN 767 (1373)
T KOG0384|consen 688 LDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGIN 767 (1373)
T ss_pred HHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccc
Confidence 45666777777666666666554432 34 3456899999999999999983 36778999999999999
Q ss_pred CCC-ceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 86 MPA-KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 86 ~pa-~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+-+ .||||.+. .-+|..=+|...||-|-|....-.+|=++...
T Consensus 768 LatADTVIIFDS---------DWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 768 LATADTVIIFDS---------DWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred ccccceEEEeCC---------CCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 886 88888754 23566668999999999988888888776554
No 133
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=85.79 E-value=1.6 Score=52.68 Aligned_cols=57 Identities=28% Similarity=0.454 Sum_probs=42.2
Q ss_pred HHhHHHHhc-cCE--EEEcCCCCHHHHHHHHHHHHcCCCcEEEech----hhhcccCCCC--ceEEEeccc
Q 006319 36 VSNILPLLK-RGI--GVHHSGLLPILKEVIEILFQEGLIKCLFATE----TFSIGLNMPA--KTVVFTNVR 97 (650)
Q Consensus 36 ~~~l~~~l~-~GI--g~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~----tla~Gin~pa--~~VVi~~~~ 97 (650)
...+.+.|+ .|| +..|++ ++...+.|.+|.++|||... ++.+|+|+|. +-+||.|..
T Consensus 351 aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 351 AEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 455555554 354 556663 36677899999999999865 5789999997 668888876
No 134
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=85.70 E-value=1.5 Score=53.68 Aligned_cols=80 Identities=25% Similarity=0.309 Sum_probs=63.8
Q ss_pred EEcCCCCHHHHHHHHHHHHcC-CCcEEEech-hhhcccCCCC-ceEEEeccccccCCCccccCHhHHHhhhccCCCCCCC
Q 006319 49 VHHSGLLPILKEVIEILFQEG-LIKCLFATE-TFSIGLNMPA-KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGID 125 (650)
Q Consensus 49 ~hH~gl~~~~R~~ve~lF~~g-~i~vLvaT~-tla~Gin~pa-~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d 125 (650)
..-|..+|.+|..+...|.++ .|+||+-|+ .-+.|+|+.. .+|||. +|.|=+..+ +|..-||-|-|..
T Consensus 1372 RLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFv--------EHDWNPMrD-LQAMDRAHRIGQK 1442 (1549)
T KOG0392|consen 1372 RLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFV--------EHDWNPMRD-LQAMDRAHRIGQK 1442 (1549)
T ss_pred EecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEE--------ecCCCchhh-HHHHHHHHhhcCc
Confidence 457999999999999999999 999987665 6689999875 888887 444444444 8999999999988
Q ss_pred CceEEEEeecCC
Q 006319 126 ERGICILMVDDK 137 (650)
Q Consensus 126 ~~G~~ii~~~~~ 137 (650)
..-.|+=+....
T Consensus 1443 rvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1443 RVVNVYRLITRG 1454 (1549)
T ss_pred eeeeeeeehhcc
Confidence 777777655444
No 135
>COG4889 Predicted helicase [General function prediction only]
Probab=85.44 E-value=0.93 Score=53.64 Aligned_cols=79 Identities=27% Similarity=0.367 Sum_probs=57.5
Q ss_pred CEEEEc--CCCCHHHHHHHHHH---HHcCCCcEEEechhhhcccCCCC-ceEEEeccccccCCCccccCHhHHHhhhccC
Q 006319 46 GIGVHH--SGLLPILKEVIEIL---FQEGLIKCLFATETFSIGLNMPA-KTVVFTNVRKFDGDKFRWISSGEYIQMSGRA 119 (650)
Q Consensus 46 GIg~hH--~gl~~~~R~~ve~l---F~~g~i~vLvaT~tla~Gin~pa-~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRA 119 (650)
.|.+-| |.|...+|.....+ |....++||---.-|+.|||+|| ..|||.+.+ -+.-+++|-+||.
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr---------~smVDIVQaVGRV 569 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPR---------SSMVDIVQAVGRV 569 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCc---------hhHHHHHHHHHHH
Confidence 455555 78888888544443 45678999999999999999999 777776432 3578999999999
Q ss_pred CCCCC-CCceEEEEe
Q 006319 120 GRRGI-DERGICILM 133 (650)
Q Consensus 120 GR~g~-d~~G~~ii~ 133 (650)
=|... ...|.+|+-
T Consensus 570 MRKa~gK~yGYIILP 584 (1518)
T COG4889 570 MRKAKGKKYGYIILP 584 (1518)
T ss_pred HHhCcCCccceEEEE
Confidence 88532 237877653
No 136
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=85.41 E-value=0.8 Score=40.49 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHHhHhCCcCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCCh-hHHHHHhhc
Q 006319 463 KRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKV-EEMVSLLSC 519 (650)
Q Consensus 463 ~~VL~~Lgyid~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p-~eiaAllS~ 519 (650)
.+.|..||.||+++.+|.-|+..+.+-- +.-+---+++...|+-+++ --|||+||+
T Consensus 3 ~~~L~~Lgald~~~~lT~lG~~~~~lPl-~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~ 59 (102)
T PF04408_consen 3 LELLKSLGALDENGNLTPLGRKMSQLPL-DPRLAKMLLYGIQFGCLDEALIIAAILSV 59 (102)
T ss_dssp HHHHHHTTSB-TTS-B-HHHHHHTTSSS--HHHHHHHHHHHHCT-HHHHHHHHHHHTS
T ss_pred HHHHHHCCCCCCCCCcCHHHHHHHHCCC-chHhHhHhhhccccccHHHHHHHHHHHcC
Confidence 4679999999999999999999999973 4444444444445554333 234444443
No 137
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=82.75 E-value=1.7 Score=48.62 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=66.4
Q ss_pred ccCEEE--EcCCCCHHHHHHHHHHHHcC-CCcEEE-echhhhcccCCCC-ceEEEeccccccCCCccccCHhHHHhhhcc
Q 006319 44 KRGIGV--HHSGLLPILKEVIEILFQEG-LIKCLF-ATETFSIGLNMPA-KTVVFTNVRKFDGDKFRWISSGEYIQMSGR 118 (650)
Q Consensus 44 ~~GIg~--hH~gl~~~~R~~ve~lF~~g-~i~vLv-aT~tla~Gin~pa-~~VVi~~~~k~dg~~~~~~~~~e~~qm~GR 118 (650)
+++||. ..|..++..|+..-+.|+.. .++|-+ .-+..++|+++.| ..|||..+ +.+|+-++|---|
T Consensus 514 ~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL---------~wnPgvLlQAEDR 584 (689)
T KOG1000|consen 514 KRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL---------HWNPGVLLQAEDR 584 (689)
T ss_pred HcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe---------cCCCceEEechhh
Confidence 345553 47999999999999999954 566543 3345589999998 66667654 4577778888889
Q ss_pred CCCCCCCCceEEEEeecCCCcHHHHHHHhcCC
Q 006319 119 AGRRGIDERGICILMVDDKMEPSTAKMMLKGS 150 (650)
Q Consensus 119 AGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~ 150 (650)
|-|.|....-.+++++-...-.++...+++.+
T Consensus 585 aHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~K 616 (689)
T KOG1000|consen 585 AHRIGQKSSVFVQYLVAKGTADDYMWPMLQQK 616 (689)
T ss_pred hhhccccceeeEEEEEecCchHHHHHHHHHHH
Confidence 98888755444444554443445555555443
No 138
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=81.59 E-value=12 Score=42.86 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=105.4
Q ss_pred HHHHHHHHHhHhCCcCCCC---ccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccCCC------
Q 006319 458 ELKARKRVLRRLGYATSDD---VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQD------ 528 (650)
Q Consensus 458 e~~~~~~VL~~Lgyid~~~---~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~~~------ 528 (650)
+.++.+.-|+.+|||+.+| .+|-.||+++.=. -.--.+|.|..|+..+.+|=.||+-|.-|--..=++.
T Consensus 618 ~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~F--l~p~~a~~Ir~~v~~~~~pl~i~~~l~pfE~ayls~~l~r~i~ 695 (830)
T COG1202 618 DPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSF--LGPSEAEFIREGVLASMDPLRIAAELEPFENAYLSGFLKRAIE 695 (830)
T ss_pred CHHHHHHHHHhcCCeeccCCEeeeccccceeEEee--cCchHHHHHHHhhhccCChHhHhhccccccccccChHHHHHHH
Confidence 6778899999999999764 5999999876322 2344689999999999999999998876643211100
Q ss_pred ---CCCCcHHHHH-HHHHHHHHHHHHH-------HHHHHcCCCcccccccccCCccHHHH---------HHHHhCCCCHH
Q 006319 529 ---ASKPREELEL-LFTQLQDTARRVA-------KVQLECKVQIDVEGFVNSFRPDIMEA---------VYAWAKGSKFY 588 (650)
Q Consensus 529 ---~~~l~~~L~~-~~~~l~~~a~~I~-------~v~~e~~l~i~~~~y~~~~~~~Lm~v---------Vy~WA~G~~F~ 588 (650)
....+.++.. ++..+.+--++|. +..-.. ..||....+-..++. +..--.|.+-.
T Consensus 696 ~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i-----~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~ 770 (830)
T COG1202 696 SALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLI-----YMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDPS 770 (830)
T ss_pred HHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHH-----HHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHH
Confidence 0111222211 2222221111111 110000 011222111112222 33345788888
Q ss_pred HHHhh------CCCCCChHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhh
Q 006319 589 EIMEI------TPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKI 638 (650)
Q Consensus 589 eI~~~------Tdl~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~~~a~~~I 638 (650)
+|-.. -..+.|||--|+-.+..+|.-+...|++.+.++.++.+......|
T Consensus 771 ~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~i 826 (830)
T COG1202 771 QISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKI 826 (830)
T ss_pred HHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 87766 368899999998888888888888888888888887766555444
No 139
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=80.93 E-value=4.3 Score=47.74 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=79.8
Q ss_pred HHHHHhhcCCccCCCchhHHhHH---HHhc-----cCE--EEEcCCCCHHHHHHHHHHHHcC---CCcEEEechhhhccc
Q 006319 18 IFWSAMDMLSDDDKKLPQVSNIL---PLLK-----RGI--GVHHSGLLPILKEVIEILFQEG---LIKCLFATETFSIGL 84 (650)
Q Consensus 18 ~~~~~i~~l~~~d~~~~~~~~l~---~~l~-----~GI--g~hH~gl~~~~R~~ve~lF~~g---~i~vLvaT~tla~Gi 84 (650)
+++..+.+|.+....+-.++++. +.|. +|. .-.-|.++.++|......|..- ..=.|++|.+-+.||
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 56777777887776655444443 3332 344 4558999999999999999853 455788999999999
Q ss_pred CCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 85 NMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 85 n~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
|+.+..|||...+-| +|.-=+|..-||-|-|....-.|+=++...
T Consensus 555 NL~aADtVIlyDSDW--------NPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 555 NLTAADTVILYDSDW--------NPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccEEEEecCCC--------CchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999866666633333 444457888899999977777777666554
No 140
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=80.72 E-value=5.8 Score=47.83 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=66.4
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHcC--CCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 46 GIGVHHSGLLPILKEVIEILFQEG--LIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF~~g--~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
....++|+++...|......|.++ ..-.+++|...+.|+|+-+.++||. || .+..+....|...||-|-|
T Consensus 737 ~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~----~d----~~wnp~~~~Qa~dRa~Rig 808 (866)
T COG0553 737 KYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL----FD----PWWNPAVELQAIDRAHRIG 808 (866)
T ss_pred cEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE----ec----cccChHHHHHHHHHHHHhc
Confidence 478899999999999999999986 5556666779999999997665655 33 2678899999999999998
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
.+..-.++-+....
T Consensus 809 Q~~~v~v~r~i~~~ 822 (866)
T COG0553 809 QKRPVKVYRLITRG 822 (866)
T ss_pred CcceeEEEEeecCC
Confidence 77666666555444
No 141
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=79.10 E-value=19 Score=44.23 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCccCCCc------hhHHhHHHHhc-cCEE--EEcCCCCHHHHHHHHHHHHcCCCcEEE
Q 006319 5 DLTEDDEKVNIETIFWSAMDMLSDDDKKL------PQVSNILPLLK-RGIG--VHHSGLLPILKEVIEILFQEGLIKCLF 75 (650)
Q Consensus 5 ~~~~~~e~~~i~~~~~~~i~~l~~~d~~~------~~~~~l~~~l~-~GIg--~hH~gl~~~~R~~ve~lF~~g~i~vLv 75 (650)
-|.|..|| -..++++....-....+.+ ..-..|..+|. +||. +.++.....+-++|.++=+.| .|-|
T Consensus 606 vy~t~~eK--~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTI 681 (1112)
T PRK12901 606 VYKTKREK--YNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTI 681 (1112)
T ss_pred EecCHHHH--HHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEE
Confidence 35566666 4566666654333222222 22333444443 4552 233333344455555544444 6889
Q ss_pred echhhhcccCCCC--------ceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeec
Q 006319 76 ATETFSIGLNMPA--------KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVD 135 (650)
Q Consensus 76 aT~tla~Gin~pa--------~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~ 135 (650)
||...++|-|+.- -..||- + .++-+..--.|..|||||-| ..|.+-++.+
T Consensus 682 ATNMAGRGTDIkLg~~V~e~GGL~VIg-T-------erheSrRID~QLrGRaGRQG--DPGsS~f~lS 739 (1112)
T PRK12901 682 ATNMAGRGTDIKLSPEVKAAGGLAIIG-T-------ERHESRRVDRQLRGRAGRQG--DPGSSQFYVS 739 (1112)
T ss_pred eccCcCCCcCcccchhhHHcCCCEEEE-c-------cCCCcHHHHHHHhcccccCC--CCCcceEEEE
Confidence 9999999999872 122332 2 24567777789999999999 4555444433
No 142
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=78.40 E-value=4.4 Score=48.69 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCccCCC------chhHHhHHHHhc-cCEE--EEcCCCCHHHHHHHHHHHHcC-CCcEE
Q 006319 5 DLTEDDEKVNIETIFWSAMDMLSDDDKK------LPQVSNILPLLK-RGIG--VHHSGLLPILKEVIEILFQEG-LIKCL 74 (650)
Q Consensus 5 ~~~~~~e~~~i~~~~~~~i~~l~~~d~~------~~~~~~l~~~l~-~GIg--~hH~gl~~~~R~~ve~lF~~g-~i~vL 74 (650)
-|.|.++| ...++++....-....+. +.....+..+|. .||. +.++.-...+-++|. +.| .=.|.
T Consensus 404 iy~t~~~K--~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa---~AG~~GaVT 478 (925)
T PRK12903 404 IFGTKHAK--WKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIA---KAGQKGAIT 478 (925)
T ss_pred EEEcHHHH--HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHH---hCCCCCeEE
Confidence 34555555 345555554332222222 223344555554 3542 333432222333332 455 45789
Q ss_pred EechhhhcccCCCCc---------eEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEee
Q 006319 75 FATETFSIGLNMPAK---------TVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV 134 (650)
Q Consensus 75 vaT~tla~Gin~pa~---------~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~ 134 (650)
|||..+++|.|+.-. .||.+ . ++-+..==.|..|||||-| ..|.+-++.
T Consensus 479 IATNMAGRGTDI~Lg~~V~~~GGLhVIgT--e-------rheSrRIDnQLrGRaGRQG--DpGss~f~l 536 (925)
T PRK12903 479 IATNMAGRGTDIKLSKEVLELGGLYVLGT--D-------KAESRRIDNQLRGRSGRQG--DVGESRFFI 536 (925)
T ss_pred EecccccCCcCccCchhHHHcCCcEEEec--c-------cCchHHHHHHHhcccccCC--CCCcceEEE
Confidence 999999999998753 33332 1 2333333359999999999 455544443
No 143
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=77.18 E-value=5.1 Score=48.58 Aligned_cols=114 Identities=19% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCccCCC------chhHHhHHHHhc-cCEE--EEcCCCCHHHHHHHHHHHHcCC-CcEEE
Q 006319 6 LTEDDEKVNIETIFWSAMDMLSDDDKK------LPQVSNILPLLK-RGIG--VHHSGLLPILKEVIEILFQEGL-IKCLF 75 (650)
Q Consensus 6 ~~~~~e~~~i~~~~~~~i~~l~~~d~~------~~~~~~l~~~l~-~GIg--~hH~gl~~~~R~~ve~lF~~g~-i~vLv 75 (650)
+.|..+| .+.++++..+.-....+. +.....+..+|. .||. +.++.-...+-++|. +.|. =.|-|
T Consensus 547 y~t~~~k--~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia---~AG~~g~VTI 621 (970)
T PRK12899 547 YMTEREK--YHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIA---GAGKLGAVTV 621 (970)
T ss_pred ecCHHHH--HHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHH---hcCCCCcEEE
Confidence 4444443 566666665443323222 223344555553 4553 223322222333333 3443 47899
Q ss_pred echhhhcccCCCCc---------eEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeec
Q 006319 76 ATETFSIGLNMPAK---------TVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVD 135 (650)
Q Consensus 76 aT~tla~Gin~pa~---------~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~ 135 (650)
||...++|.|+.-. .||.+ .++.+..--.|..|||||-| ..|.+-++.+
T Consensus 622 ATNmAGRGTDIkl~~~v~~~GGLhVIgT---------er~es~Rid~Ql~GRagRQG--dpGss~f~lS 679 (970)
T PRK12899 622 ATNMAGRGTDIKLDEEAVAVGGLYVIGT---------SRHQSRRIDRQLRGRCARLG--DPGAAKFFLS 679 (970)
T ss_pred eeccccCCcccccCchHHhcCCcEEEee---------ccCchHHHHHHHhcccccCC--CCCceeEEEE
Confidence 99999999998743 23322 24667778899999999999 4555544443
No 144
>PF13871 Helicase_C_4: Helicase_C-like
Probab=76.54 E-value=3.3 Score=43.51 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCC-CceEEEEeec
Q 006319 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGID-ERGICILMVD 135 (650)
Q Consensus 61 ~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d-~~G~~ii~~~ 135 (650)
...+.|.+|..+|+|.|++.+-||.+-|..=+-+.-++.--.-..|-+....+|+.||+-|.|.- ..-+.+++++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 44559999999999999999999999874222211110000011356899999999999999863 2334444433
No 145
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=75.62 E-value=7 Score=46.27 Aligned_cols=114 Identities=19% Similarity=0.172 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCccCCC------chhHHhHHHHhc-cCE--EEEcCCCCHHHHHHHHHHHHcCCCcEEEe
Q 006319 6 LTEDDEKVNIETIFWSAMDMLSDDDKK------LPQVSNILPLLK-RGI--GVHHSGLLPILKEVIEILFQEGLIKCLFA 76 (650)
Q Consensus 6 ~~~~~e~~~i~~~~~~~i~~l~~~d~~------~~~~~~l~~~l~-~GI--g~hH~gl~~~~R~~ve~lF~~g~i~vLva 76 (650)
|.|.++| .+.++++..+.-....+. +.....+..+|. .|| -+.++.-...+-++|.++=+. =.|-||
T Consensus 406 y~t~~~k--~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~--gaVTIA 481 (764)
T PRK12326 406 YATAAEK--NDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKY--GAVTVS 481 (764)
T ss_pred EeCHHHH--HHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCC--CcEEEE
Confidence 4455554 566666654433322222 233344555553 344 233444333333333333333 468899
Q ss_pred chhhhcccCCCCc----------------eEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEee
Q 006319 77 TETFSIGLNMPAK----------------TVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV 134 (650)
Q Consensus 77 T~tla~Gin~pa~----------------~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~ 134 (650)
|...++|.|+.-. .||.+ .++-+..-=.|..|||||-| ..|.+-++.
T Consensus 482 TNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgT---------erheSrRID~QLrGRaGRQG--DpGss~f~l 544 (764)
T PRK12326 482 TQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGT---------GRHRSERLDNQLRGRAGRQG--DPGSSVFFV 544 (764)
T ss_pred ecCCCCccCeecCCCcccchHHHHHcCCcEEEec---------cCCchHHHHHHHhcccccCC--CCCceeEEE
Confidence 9999999998632 23322 23556666789999999999 445544443
No 146
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.46 E-value=13 Score=44.26 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHc----CCCcEEEec--hhhhcccCCCC---ceEEEeccccccC------------------CCc-ccc-
Q 006319 57 ILKEVIEILFQE----GLIKCLFAT--ETFSIGLNMPA---KTVVFTNVRKFDG------------------DKF-RWI- 107 (650)
Q Consensus 57 ~~R~~ve~lF~~----g~i~vLvaT--~tla~Gin~pa---~~VVi~~~~k~dg------------------~~~-~~~- 107 (650)
.+++.+.+.|++ |.=.||+|+ -.++.|||+|. +.|||.|..+... .+. .++
T Consensus 565 ~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 644 (705)
T TIGR00604 565 QETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYE 644 (705)
T ss_pred chHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHH
Confidence 567778888854 444599999 88999999997 7899998764211 011 111
Q ss_pred --CHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 108 --SSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 108 --~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
....+.|-+||+=|...| .|.++++ +..
T Consensus 645 ~~a~~~v~QaiGR~IR~~~D-~G~iill-D~R 674 (705)
T TIGR00604 645 FDAMRAVNQAIGRVIRHKDD-YGSIVLL-DKR 674 (705)
T ss_pred HHHHHHHHHHhCccccCcCc-eEEEEEE-ehh
Confidence 135678999999998755 7866654 544
No 147
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=73.42 E-value=3.8 Score=45.82 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=50.0
Q ss_pred CCcEEEechhhhcccCCCCceEEEec----cccccCCC------ccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 70 LIKCLFATETFSIGLNMPAKTVVFTN----VRKFDGDK------FRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 70 ~i~vLvaT~tla~Gin~pa~~VVi~~----~~k~dg~~------~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
.=||+|+|....-.+.++....||.. -+-|+++- .+|++-..-.||+|||||. ..|.|+-++.+.
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfrLYte~ 387 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEE 387 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEEeecHH
Confidence 34899999999999999997777653 24566641 3577788899999999998 489998876554
No 148
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.80 E-value=43 Score=38.41 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=41.9
Q ss_pred hHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC-ceEEEec
Q 006319 38 NILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA-KTVVFTN 95 (650)
Q Consensus 38 ~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa-~~VVi~~ 95 (650)
.+.+.+...+++.||++++.+|..+-....+|..+|+|+|..... ..++. ..|||..
T Consensus 44 ~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 44 RFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 344445556899999999999998888888999999999987443 33444 4455553
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=67.25 E-value=8.1 Score=45.68 Aligned_cols=69 Identities=9% Similarity=0.119 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCcEEEech----hhhcccCCCCceEEEeccc-cccCCCcc--ccCHhHHHhhhccCCCCCCCCceEEE
Q 006319 59 KEVIEILFQEGLIKCLFATE----TFSIGLNMPAKTVVFTNVR-KFDGDKFR--WISSGEYIQMSGRAGRRGIDERGICI 131 (650)
Q Consensus 59 R~~ve~lF~~g~i~vLvaT~----tla~Gin~pa~~VVi~~~~-k~dg~~~~--~~~~~e~~qm~GRAGR~g~d~~G~~i 131 (650)
++.+...|. +..+|||.|. .++ | ++ ..|+|.+.. -.....++ .-+..-++|-+|||||.. ..|.++
T Consensus 461 ~d~~l~~~~-~~~~IlVGTqgaepm~~-g-~~--~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~--~~G~V~ 533 (665)
T PRK14873 461 GDQVVDTVD-AGPALVVATPGAEPRVE-G-GY--GAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA--DGGQVV 533 (665)
T ss_pred hHHHHHhhc-cCCCEEEECCCCccccc-C-Cc--eEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC--CCCEEE
Confidence 344677786 5999999998 555 3 22 344554431 11111111 113566789999999987 679999
Q ss_pred Eee
Q 006319 132 LMV 134 (650)
Q Consensus 132 i~~ 134 (650)
|.+
T Consensus 534 iq~ 536 (665)
T PRK14873 534 VVA 536 (665)
T ss_pred EEe
Confidence 875
No 150
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=66.98 E-value=7.5 Score=43.05 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=33.2
Q ss_pred CcHHHHHHHhcCCCCccccccccChHHHHHHHHhcCCC
Q 006319 138 MEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGS 175 (650)
Q Consensus 138 ~~~~~~~~~~~~~~~pl~S~~~~~~~~~l~ll~~~~~~ 175 (650)
+....+.+++.+.|+||.|+|++|.+|+||++...|..
T Consensus 37 W~e~TF~rL~~a~PE~L~s~f~vthaMlLnvl~r~gd~ 74 (461)
T PF12029_consen 37 WSEKTFERLIEAEPEPLTSRFRVTHAMLLNVLARPGDA 74 (461)
T ss_pred CCHHHHHHHhcCCCCCCccCeeccHHHHHHHHcCCCcH
Confidence 35678999999999999999999999999999766643
No 151
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=66.45 E-value=8.5 Score=45.83 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHH-cCCCcEEEechhhhcccCCCC-ceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 56 PILKEVIEILFQ-EGLIKCLFATETFSIGLNMPA-KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 56 ~~~R~~ve~lF~-~g~i~vLvaT~tla~Gin~pa-~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
......|-..+. +..=+|.++.+.+.=|||+|. .++||... -.|...|.||+||+-|.-.
T Consensus 466 ~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~---------VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 466 EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK---------VRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh---------hhhHHHHHHHhcCccccCc
Confidence 445666666665 556788888899999999998 66666632 3478999999999988643
No 152
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=65.88 E-value=12 Score=31.84 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=43.1
Q ss_pred HHHHhHhCCcCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceee
Q 006319 463 KRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQ 523 (650)
Q Consensus 463 ~~VL~~Lgyid~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~q 523 (650)
.+.|..||-||.++.+|..|+..+++-- + --++-+|..+....=-..++++++|++-.+
T Consensus 3 ~~~L~~LgAld~~~~lT~lG~~m~~lPl-~-Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~ 61 (92)
T smart00847 3 LELLYELGALDDDGRLTPLGRKMAELPL-D-PRLAKMLLAAAELFGCLDEILTIAAMLSVG 61 (92)
T ss_pred HHHHHHCCCcCCCCCcCHHHHHHHHCCC-C-hHHHHHHHHHHhhcCcHHHHHHHHHHhcCC
Confidence 4679999999999999999999999963 4 444555555543212457888888887654
No 153
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=64.70 E-value=13 Score=45.09 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCccCCC------chhHHhHHHHhc-cCEE--EEcCCCCHHHHHHHHHHHHcCCCcEEE
Q 006319 5 DLTEDDEKVNIETIFWSAMDMLSDDDKK------LPQVSNILPLLK-RGIG--VHHSGLLPILKEVIEILFQEGLIKCLF 75 (650)
Q Consensus 5 ~~~~~~e~~~i~~~~~~~i~~l~~~d~~------~~~~~~l~~~l~-~GIg--~hH~gl~~~~R~~ve~lF~~g~i~vLv 75 (650)
-|.|..|| .+.++++....-....+. +.....+..+|. .||. +.++--...+-++|.++=+ .=.|-|
T Consensus 427 vy~t~~eK--~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTI 502 (913)
T PRK13103 427 VYLTAEEK--YAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTI 502 (913)
T ss_pred EEcCHHHH--HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEE
Confidence 35566665 466776665433323222 223344555443 3552 1223322334444443333 346899
Q ss_pred echhhhcccCCC
Q 006319 76 ATETFSIGLNMP 87 (650)
Q Consensus 76 aT~tla~Gin~p 87 (650)
||...++|.|+.
T Consensus 503 ATNMAGRGTDIk 514 (913)
T PRK13103 503 ATNMAGRGTDIL 514 (913)
T ss_pred eccCCCCCCCEe
Confidence 999999999984
No 154
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=63.28 E-value=12 Score=27.99 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=33.6
Q ss_pred CccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 006319 571 RPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 611 (650)
Q Consensus 571 ~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~El 611 (650)
.+.-..++..|+.|.+..+|.+..++.++++=+.++|+-+-
T Consensus 5 ~~~e~~i~~~~~~g~s~~eia~~l~is~~tv~~~~~~~~~k 45 (58)
T smart00421 5 TPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRK 45 (58)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33445567778999999999999999999999999887443
No 155
>PRK00118 putative DNA-binding protein; Validated
Probab=62.26 E-value=25 Score=31.49 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=45.4
Q ss_pred ccccCCccHHHHHHHH-hCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhh
Q 006319 566 FVNSFRPDIMEAVYAW-AKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKS 621 (650)
Q Consensus 566 y~~~~~~~Lm~vVy~W-A~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~ 621 (650)
|.+.+.+.--.++..+ ..|.|+.+|.+.+++++++|=+.+.|.-.-||+.-..-..
T Consensus 14 ~~~~L~ekqRevl~L~y~eg~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~~~~~~~ 70 (104)
T PRK00118 14 YGSLLTEKQRNYMELYYLDDYSLGEIAEEFNVSRQAVYDNIKRTEKLLEDYEEKLHL 70 (104)
T ss_pred HhccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 4455666666666665 7899999999999999999999999999988887766543
No 156
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=61.99 E-value=20 Score=42.60 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=66.7
Q ss_pred hccCEEEEcCCCCHHHHHHHHHHHHcC-CC-cEEEechhhhcccCCCCce-EEEeccccccCCCccccCHhHHHhhhccC
Q 006319 43 LKRGIGVHHSGLLPILKEVIEILFQEG-LI-KCLFATETFSIGLNMPAKT-VVFTNVRKFDGDKFRWISSGEYIQMSGRA 119 (650)
Q Consensus 43 l~~GIg~hH~gl~~~~R~~ve~lF~~g-~i-~vLvaT~tla~Gin~pa~~-VVi~~~~k~dg~~~~~~~~~e~~qm~GRA 119 (650)
+..+.--.-|...-.+|..+...|... .| =.|.+|.+-+.|||+.+.+ |||++. .++|-+=.|.--||
T Consensus 800 l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~---------dFNP~dD~QAEDRc 870 (941)
T KOG0389|consen 800 LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDI---------DFNPYDDKQAEDRC 870 (941)
T ss_pred cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeec---------CCCCcccchhHHHH
Confidence 344555567888889999999999854 44 4588999999999999855 555443 34555567888888
Q ss_pred CCCCCCCceEEEEeecCCCcHHHHHHHh
Q 006319 120 GRRGIDERGICILMVDDKMEPSTAKMML 147 (650)
Q Consensus 120 GR~g~d~~G~~ii~~~~~~~~~~~~~~~ 147 (650)
-|.|....-+++-+.....-++-+.++.
T Consensus 871 HRvGQtkpVtV~rLItk~TIEE~I~~lA 898 (941)
T KOG0389|consen 871 HRVGQTKPVTVYRLITKSTIEEGILRLA 898 (941)
T ss_pred HhhCCcceeEEEEEEecCcHHHHHHHHH
Confidence 8888777777766665553334444443
No 157
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=58.65 E-value=16 Score=27.57 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHH
Q 006319 576 EAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRL 608 (650)
Q Consensus 576 ~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL 608 (650)
.+++.|+.|.+..+|++..++.+++|-+.+.|+
T Consensus 7 ~i~~~~~~~~s~~eia~~l~~s~~tv~~~~~~~ 39 (57)
T cd06170 7 EVLRLLAEGKTNKEIADILGISEKTVKTHLRNI 39 (57)
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 456678999999999999999999999888876
No 158
>COG3079 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.71 E-value=43 Score=32.41 Aligned_cols=121 Identities=21% Similarity=0.208 Sum_probs=69.9
Q ss_pred CCChhHHHHHhhcceeeccCCCC-------------CCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC----ccccccccc
Q 006319 507 DVKVEEMVSLLSCFVWQEKLQDA-------------SKPREELELLFTQLQDTARRVAKVQLECKVQ----IDVEGFVNS 569 (650)
Q Consensus 507 ~L~p~eiaAllS~fV~qek~~~~-------------~~l~~~L~~~~~~l~~~a~~I~~v~~e~~l~----i~~~~y~~~ 569 (650)
.++|+|+=+.||.++|-. .++. -.++..+..++++|... +.+-..+-++. +++++ .
T Consensus 21 ~~t~aElHG~LsG~lcgG-~~d~sWq~l~~~~tneg~A~p~~l~~~l~~l~~a---~s~~L~d~~F~f~LlLpe~e---~ 93 (186)
T COG3079 21 GLTPAELHGLLSGLLCGG-LNDSSWQPLLHDLTNEGMAPPHGLLQALEQLLQA---TSQQLEDDGFAFQLLLPEGE---D 93 (186)
T ss_pred CCCHHHHHHHHHhhhhcC-CCchhHHHHHHHHhhccCCCcHHHHHHHHHHHHH---HHHHhcCCCeEEEEecCCCC---c
Confidence 689999999999999943 3222 12455666676665443 22222222222 12221 1
Q ss_pred CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhhcCCH-----HHHHHHHHHHHhhc
Q 006319 570 FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGET-----ELEAKFEEAVSKIK 639 (650)
Q Consensus 570 ~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~iGn~-----~L~~k~~~a~~~Ik 639 (650)
.=|...+++.+||++ |--=..+| -.+++.+. --..|.++.+++.|++=+|. +++...++.++-+|
T Consensus 94 ~vf~rADAL~eW~nh--FL~GlGL~-~~~l~~~~--gE~~EaldDL~~iaQlg~Deded~EE~~~~leEiiEyvR 163 (186)
T COG3079 94 VVFDRADALAEWCNH--FLLGLGLT-QPKLSKLT--GEAGEALDDLANIAQLGYDEDEDQEELEESLEEIIEYVR 163 (186)
T ss_pred HHHHHHHHHHHHHHH--HHHhhccc-ccchhhhc--ccHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHH
Confidence 236779999999984 21111111 11111111 12468888888888875554 78888888888766
No 159
>PRK02362 ski2-like helicase; Provisional
Probab=55.99 E-value=94 Score=37.32 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhHhCCcCCCC---ccchhhhHHhhhcCCchhHHHHHHHhCCCCC---CChhHHHHHhhcceeeccCCCCC
Q 006319 457 DELKARKRVLRRLGYATSDD---VVELKGKVACEISSAEELTLTELIFNGVLKD---VKVEEMVSLLSCFVWQEKLQDAS 530 (650)
Q Consensus 457 ~e~~~~~~VL~~Lgyid~~~---~vt~KGrvA~eI~s~dELllTEllf~g~f~~---L~p~eiaAllS~fV~qek~~~~~ 530 (650)
+-.+.-++-|.+.|+|+.++ .+|..|++++.-+- +...++.+.+++ .. ++...+--++|+ +++..
T Consensus 465 ~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l--~~~t~~~~~~~l-~~~~~~~~~~~l~~i~~------~~e~~ 535 (737)
T PRK02362 465 RVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYI--DPLSAAEIIDGL-EAAKKPTDLGLLHLVCS------TPDMY 535 (737)
T ss_pred HHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcC--CHHHHHHHHHHh-hhcccCchHHHHHHhhc------Ccccc
Confidence 34567788999999998654 48999999998763 223344444432 22 122222222221 11111
Q ss_pred CC--cHHHHHHHHHHHHHHHHH-HHHHHHcCCCc--cccccccc-CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHH
Q 006319 531 KP--REELELLFTQLQDTARRV-AKVQLECKVQI--DVEGFVNS-FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRA 604 (650)
Q Consensus 531 ~l--~~~L~~~~~~l~~~a~~I-~~v~~e~~l~i--~~~~y~~~-~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~ 604 (650)
.+ ...= ...+.+++..- .++. -+++. ...+|-.. ..+.-.-+.++|-++.++.+|.+.-++..||+-..
T Consensus 536 ~~~~r~~e---~~~l~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~ 610 (737)
T PRK02362 536 ELYLRSGD---YEWLNEYLYEHEDELL--GDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGK 610 (737)
T ss_pred ccccChhH---HHHHHHHHHhcccchh--ccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHH
Confidence 11 1110 11111111100 0000 01111 11111110 11223567899999999999999999999999777
Q ss_pred HHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCC
Q 006319 605 IRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRD 641 (650)
Q Consensus 605 irRL~Ellrq~~~Aa~~iGn~~L~~k~~~a~~~IkRd 641 (650)
.....-++..+...|...| ..++..+.+-+..|+-+
T Consensus 611 ~~~~~~l~~a~~~i~~~~~-~~~~~~~~~l~~~l~~g 646 (737)
T PRK02362 611 VETAEWLLHAAERLASELD-LDLARAARELEKRVEYG 646 (737)
T ss_pred HHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHhC
Confidence 7777777777777776655 44555544444444433
No 160
>PRK05580 primosome assembly protein PriA; Validated
Probab=55.96 E-value=87 Score=37.31 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=40.7
Q ss_pred HHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC-ceEEEec
Q 006319 39 ILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA-KTVVFTN 95 (650)
Q Consensus 39 l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa-~~VVi~~ 95 (650)
+.+.+...++..||++++.+|..+-....+|..+|+|+|.... -+.+.. ..||+..
T Consensus 210 l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 210 FRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred HHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 3344445689999999999999888888999999999998633 233444 3455553
No 161
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=53.55 E-value=13 Score=27.23 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=31.7
Q ss_pred ccHHHHHHHH-hCCCCHHHHHhhCCCCCChHHHHHHHHHHHH
Q 006319 572 PDIMEAVYAW-AKGSKFYEIMEITPVFEGSLIRAIRRLEEVL 612 (650)
Q Consensus 572 ~~Lm~vVy~W-A~G~~F~eI~~~Tdl~EG~IVR~irRL~Ell 612 (650)
+.--.++..+ ..|.+..+|.+..++.++.|-|++.|..+-|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~ia~~~~~s~~~i~~~~~~~~~~l 54 (55)
T cd06171 13 EREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKL 54 (55)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 3333444444 3999999999999999999999998876544
No 162
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=53.08 E-value=52 Score=40.03 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhHhCCcCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceee
Q 006319 457 DELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQ 523 (650)
Q Consensus 457 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~q 523 (650)
..+.+=+..|..||.+|+++.+|..||..+++-- +.-+-.-+|....|. -..-.+||.++++..+
T Consensus 384 ~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~-~Prla~~ll~a~~~~-~~~l~~a~~laall~e 448 (812)
T PRK11664 384 AALAAAKRLLQQLGALDGQGRLTARGRKMAALGN-DPRLAAMLVAAKEDD-EAALATAAKLAAILEE 448 (812)
T ss_pred HHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCC-chHHHHHHHHHHhcC-chhhHHHHHHHHhhcc
Confidence 3577778999999999999999999999999963 544444444443443 1111368888886654
No 163
>PRK04217 hypothetical protein; Provisional
Probab=52.83 E-value=34 Score=30.95 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=43.3
Q ss_pred CCccHHHHHHHHh-CCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhh
Q 006319 570 FRPDIMEAVYAWA-KGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAK 620 (650)
Q Consensus 570 ~~~~Lm~vVy~WA-~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~ 620 (650)
+...--+++..|. .|.|+.+|.+..++++++|=+.++|..+.|++.-....
T Consensus 43 Lt~eereai~l~~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L~~~~ 94 (110)
T PRK04217 43 MTYEEFEALRLVDYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLVEGR 94 (110)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444457788886 99999999999999999999999999999988776654
No 164
>PRK14873 primosome assembly protein PriA; Provisional
Probab=52.32 E-value=90 Score=37.13 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=68.2
Q ss_pred cCCCchhHH-hHHHHhc-cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC-ceEEEecc--ccccCCC
Q 006319 29 DDKKLPQVS-NILPLLK-RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA-KTVVFTNV--RKFDGDK 103 (650)
Q Consensus 29 ~d~~~~~~~-~l~~~l~-~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa-~~VVi~~~--~k~dg~~ 103 (650)
+-..++|+. .+.+.+. ..|+.+|+++++.+|...-....+|..+|+|-|.. |.=.-++. ..||+..- ..|-..+
T Consensus 197 Ei~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS-AvFaP~~~LgLIIvdEEhd~sykq~~ 275 (665)
T PRK14873 197 DQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS-AVFAPVEDLGLVAIWDDGDDLLAEPR 275 (665)
T ss_pred chhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce-eEEeccCCCCEEEEEcCCchhhcCCC
Confidence 333445543 3344443 45999999999999999999999999999999988 43444444 33455432 1121112
Q ss_pred ccccCHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcC
Q 006319 104 FRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKG 149 (650)
Q Consensus 104 ~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~ 149 (650)
..+++..+..-+-++ ..|..+++.+..+..+.+.....|
T Consensus 276 ~p~yhaRdvA~~Ra~-------~~~~~lvLgSaTPSles~~~~~~g 314 (665)
T PRK14873 276 APYPHAREVALLRAH-------QHGCALLIGGHARTAEAQALVESG 314 (665)
T ss_pred CCCccHHHHHHHHHH-------HcCCcEEEECCCCCHHHHHHHhcC
Confidence 223455555544333 345566676666565655555444
No 165
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=52.12 E-value=31 Score=40.63 Aligned_cols=84 Identities=17% Similarity=0.046 Sum_probs=54.3
Q ss_pred HHHHHHHHHc----CCCcEEEechhhhcccCC--------CC---ceEEEeccccccC-----------CCcccc-----
Q 006319 59 KEVIEILFQE----GLIKCLFATETFSIGLNM--------PA---KTVVFTNVRKFDG-----------DKFRWI----- 107 (650)
Q Consensus 59 R~~ve~lF~~----g~i~vLvaT~tla~Gin~--------pa---~~VVi~~~~k~dg-----------~~~~~~----- 107 (650)
|......|++ |.=.|||+|.+|-.|||+ |. ..|||..+..--. ++..|+
T Consensus 507 ~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~ 586 (636)
T TIGR03117 507 LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINE 586 (636)
T ss_pred HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHH
Confidence 3445666765 578999999999999999 33 7788887652100 111121
Q ss_pred CHhHHHhhhccCCCCCCC-CceEEEEeecCCCcHHHH
Q 006319 108 SSGEYIQMSGRAGRRGID-ERGICILMVDDKMEPSTA 143 (650)
Q Consensus 108 ~~~e~~qm~GRAGR~g~d-~~G~~ii~~~~~~~~~~~ 143 (650)
..--+.|-+||.=|...| ..|.++|+ ++.....+.
T Consensus 587 a~i~lkQg~GRLIR~~~D~~~G~i~il-D~R~~~~yg 622 (636)
T TIGR03117 587 SLMMLRQGLGRLVRHPDMPQNRRIHML-DGRIHWPYM 622 (636)
T ss_pred HHHHHHHhcCceeecCCCcCceEEEEE-eCCCCchhH
Confidence 234577889999888766 37876664 544443433
No 166
>PF12246 MKT1_C: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022039 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the C-terminal region of MKT1.
Probab=51.83 E-value=26 Score=36.15 Aligned_cols=45 Identities=31% Similarity=0.333 Sum_probs=37.9
Q ss_pred HHHhHhCCcCCCCccchhhhHHhhhcCC------ch--hHHHHHHHhCCCCCC
Q 006319 464 RVLRRLGYATSDDVVELKGKVACEISSA------EE--LTLTELIFNGVLKDV 508 (650)
Q Consensus 464 ~VL~~Lgyid~~~~vt~KGrvA~eI~s~------dE--LllTEllf~g~f~~L 508 (650)
+.|.-+||+|+...+|.=|++.....+. +| +++.|||..|+++.=
T Consensus 1 R~L~l~Gyi~~~~~lT~wGk~L~~~~~~~~~~~~~E~~ll~lELlR~g~L~~~ 53 (243)
T PF12246_consen 1 RFLELRGYIDKSHELTPWGKALAKALKSLKPNDLQEALLLLLELLRFGVLTLN 53 (243)
T ss_pred CchhHHhHhcCCCCcCHHHHHHHHHHhccCchhhhhHHHHHHHHHHcCCcCCC
Confidence 3578899999999999999999887643 22 889999999999865
No 167
>PF13518 HTH_28: Helix-turn-helix domain
Probab=51.57 E-value=26 Score=26.18 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.6
Q ss_pred HHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 576 EAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 576 ~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
.+|-.+..|.|..+++...+|..+++-||+++..+
T Consensus 4 ~iv~~~~~g~s~~~~a~~~gis~~tv~~w~~~y~~ 38 (52)
T PF13518_consen 4 QIVELYLEGESVREIAREFGISRSTVYRWIKRYRE 38 (52)
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHhHHHHHHHHHHh
Confidence 56777889999999999999999999999998876
No 168
>PRK01172 ski2-like helicase; Provisional
Probab=48.55 E-value=3.9e+02 Score=31.70 Aligned_cols=160 Identities=11% Similarity=0.141 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhHhCCcCCCC--ccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccCCCCCCCcH
Q 006319 457 DELKARKRVLRRLGYATSDD--VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPRE 534 (650)
Q Consensus 457 ~e~~~~~~VL~~Lgyid~~~--~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~~~~~~l~~ 534 (650)
.....-++-|.+.|+|+.++ .+|.-|++++..+- + .-.++.+.+.+=...+...+-.++|.. ++...+..
T Consensus 444 ~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l-~-~~t~~~~~~~l~~~~~~~~~l~~~~~~------~e~~~~~~ 515 (674)
T PRK01172 444 YYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYI-D-PESALILKSAFDHDYDEDLALYYISLC------REIIPANT 515 (674)
T ss_pred HHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCC-C-HHHHHHHHHHhhccCCHHHHHHHhhcC------cccccccc
Confidence 34566788899999998653 57999999998874 2 223344444333333444444444321 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHH
Q 006319 535 ELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQ 614 (650)
Q Consensus 535 ~L~~~~~~l~~~a~~I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq 614 (650)
.-. ..+.+++.++ +. .+.+. .++.-.-+.++|-++.+..+|.+.-.+..|++=+++....=+..-
T Consensus 516 ~~~---~~~~~~~~~~-------~~---~~~~~--~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a 580 (674)
T PRK01172 516 RDD---YYAMEFLEDI-------GV---IDGDI--SAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYS 580 (674)
T ss_pred chH---HHHHHHHHHh-------cc---ccchh--HHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 000 1122222222 21 11111 234456789999999999999999999999988886554444434
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHhhcC
Q 006319 615 LILAAKSIGETELEAKFEEAVSKIKR 640 (650)
Q Consensus 615 ~~~Aa~~iGn~~L~~k~~~a~~~IkR 640 (650)
+..-++.+ .++|.+.+..-..-|.=
T Consensus 581 ~~~~~~~~-~~~~~~~l~~~~~rl~~ 605 (674)
T PRK01172 581 LARLSSIY-KPEMRRKLEILNIRIKE 605 (674)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHc
Confidence 44444543 47777665554444433
No 169
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=47.60 E-value=53 Score=38.78 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=71.9
Q ss_pred HHHHHhhcCCccCCCchh---HHhHHHHhc-----cCE--EEEcCCCCHHHHHHHHHHHHcCCC-cEEEechhhhcccCC
Q 006319 18 IFWSAMDMLSDDDKKLPQ---VSNILPLLK-----RGI--GVHHSGLLPILKEVIEILFQEGLI-KCLFATETFSIGLNM 86 (650)
Q Consensus 18 ~~~~~i~~l~~~d~~~~~---~~~l~~~l~-----~GI--g~hH~gl~~~~R~~ve~lF~~g~i-~vLvaT~tla~Gin~ 86 (650)
.+++.+-+|..+...+.- +..+.+++. +|. --..|.....+|.-+...|+...+ -.|.+|.+-+.|||+
T Consensus 1032 ~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINL 1111 (1185)
T KOG0388|consen 1032 VLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINL 1111 (1185)
T ss_pred eHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccc
Confidence 355666667766655433 333333322 343 345788888899999999997644 468899999999999
Q ss_pred CC-ceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeec
Q 006319 87 PA-KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVD 135 (650)
Q Consensus 87 pa-~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~ 135 (650)
.| .+|||.+. .-+|.-=.|...||-|-|....-.++-+..
T Consensus 1112 TAADTViFYdS---------DWNPT~D~QAMDRAHRLGQTrdvtvyrl~~ 1152 (1185)
T KOG0388|consen 1112 TAADTVIFYDS---------DWNPTADQQAMDRAHRLGQTRDVTVYRLIT 1152 (1185)
T ss_pred cccceEEEecC---------CCCcchhhHHHHHHHhccCccceeeeeecc
Confidence 98 66666543 223444467888999988766655554443
No 170
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=46.18 E-value=43 Score=39.85 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=40.9
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhc-ccCCCCceEEEec
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSI-GLNMPAKTVVFTN 95 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~-Gin~pa~~VVi~~ 95 (650)
..++..||+++...|..+.....+|.+.|+|+|..+-. .++++.-.+||.+
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEe
Confidence 35789999999999999999999999999999986544 5667664444443
No 171
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=45.21 E-value=32 Score=41.85 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhHhCCcCCCCccchhhhHHhhhcCCchhHHHHHHHhC-CCCCCCh-hHHHHHhhc
Q 006319 457 DELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNG-VLKDVKV-EEMVSLLSC 519 (650)
Q Consensus 457 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvA~eI~s~dELllTEllf~g-~f~~L~p-~eiaAllS~ 519 (650)
..+.+-+..|..||.||+++.+|.-|+..+++-- | --++-||..+ .|.-++. ..|||+||+
T Consensus 381 ~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~-~-p~l~~~ll~~~~~~~~~~~~~iaa~ls~ 443 (819)
T TIGR01970 381 VALAAARQLLQRLGALDAQGRLTAHGKAMAALGC-H-PRLAAMLLSAHSTGLAALACDLAALLEE 443 (819)
T ss_pred HHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCC-C-HHHHHHHHHhhhcCCHHHHHHHHHHHcC
Confidence 3566778899999999999999999999999973 4 4445555544 4443221 244455543
No 172
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=45.03 E-value=87 Score=35.60 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=62.6
Q ss_pred CCccCCCc-----hhHHhHHHHhcc-----CEE--EEcCCCCHHHHHHHHHHHHcC-CCcEEEe-chhhhcccCCCCceE
Q 006319 26 LSDDDKKL-----PQVSNILPLLKR-----GIG--VHHSGLLPILKEVIEILFQEG-LIKCLFA-TETFSIGLNMPAKTV 91 (650)
Q Consensus 26 l~~~d~~~-----~~~~~l~~~l~~-----GIg--~hH~gl~~~~R~~ve~lF~~g-~i~vLva-T~tla~Gin~pa~~V 91 (650)
|.+.|+.+ .|+.++.+++.+ |+. -.-|+|+|..|....+.|++. .++|... -.+-+..+|+-..+-
T Consensus 632 l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASq 711 (791)
T KOG1002|consen 632 LRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQ 711 (791)
T ss_pred HHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhce
Confidence 44445543 455666666654 443 458999999999999999977 6776544 344455567776555
Q ss_pred EEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 92 VFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 92 Vi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
||+-..+| ++.==+|--.|.-|-|.-..-.++-+|-+.
T Consensus 712 VFmmDPWW--------NpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 712 VFMMDPWW--------NPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred eEeecccc--------cHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 55533333 444445555555555554555555555444
No 173
>PF10985 DUF2805: Protein of unknown function (DUF2805); InterPro: IPR019882 This entry represents an uncharacterised bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae O1 biovar eltor str. N16961 has three identical copies.
Probab=43.93 E-value=20 Score=29.82 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=27.6
Q ss_pred HHHhCCCCHHHHHhhCCCCCChHHHHHHHH
Q 006319 579 YAWAKGSKFYEIMEITPVFEGSLIRAIRRL 608 (650)
Q Consensus 579 y~WA~G~~F~eI~~~Tdl~EG~IVR~irRL 608 (650)
-+|..-.||..|-...++.|.++|..||+-
T Consensus 7 MAweDRtpFeaI~~qfGl~E~eVi~lMR~~ 36 (73)
T PF10985_consen 7 MAWEDRTPFEAIERQFGLSEKEVIKLMRKE 36 (73)
T ss_pred HHHccCCCHHHHHHHHCCCHHHHHHHHHhh
Confidence 479999999999999999999999999863
No 174
>TIGR03643 conserved hypothetical protein TIGR03643. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies.
Probab=42.67 E-value=22 Score=29.50 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=27.3
Q ss_pred HHHhCCCCHHHHHhhCCCCCChHHHHHHH
Q 006319 579 YAWAKGSKFYEIMEITPVFEGSLIRAIRR 607 (650)
Q Consensus 579 y~WA~G~~F~eI~~~Tdl~EG~IVR~irR 607 (650)
-+|..-.||..|-...++.|+.+|..||+
T Consensus 8 MAweDRtpFeaI~~~fGL~E~eVi~lMR~ 36 (72)
T TIGR03643 8 MAWEDRTPFEAIEQQFGLSEKEVIKLMRQ 36 (72)
T ss_pred HHHccCCCHHHHHHHHCCCHHHHHHHHHh
Confidence 47999999999999999999999999986
No 175
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=39.78 E-value=46 Score=24.98 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=30.9
Q ss_pred HHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHH
Q 006319 577 AVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQ 614 (650)
Q Consensus 577 vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq 614 (650)
+...|-.|.|+.+|-+..++++|.+=+..+|..+-||+
T Consensus 13 i~~~y~~~~t~~eIa~~lg~s~~~V~~~~~~al~kLR~ 50 (50)
T PF04545_consen 13 IRLRYFEGLTLEEIAERLGISRSTVRRILKRALKKLRK 50 (50)
T ss_dssp HHHHHTST-SHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHCCcHHHHHHHHHHHHHHhcC
Confidence 34566899999999999999999998888887776663
No 176
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=39.43 E-value=29 Score=42.48 Aligned_cols=32 Identities=28% Similarity=0.199 Sum_probs=30.9
Q ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEEechhhh
Q 006319 50 HHSGLLPILKEVIEILFQEGLIKCLFATETFS 81 (650)
Q Consensus 50 hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla 81 (650)
+||.|+...|+...+.|.+|..+|||+|+.|.
T Consensus 161 yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 161 YHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred eccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 99999999999999999999999999999875
No 177
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.40 E-value=1.4e+02 Score=35.90 Aligned_cols=115 Identities=12% Similarity=0.114 Sum_probs=74.6
Q ss_pred CCccCCCchhH-HhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCC--
Q 006319 26 LSDDDKKLPQV-SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD-- 102 (650)
Q Consensus 26 l~~~d~~~~~~-~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~-- 102 (650)
|-+|-.-+||+ ..+.......|++.|+||++.+|..+=....+|..+|++-|.. |.=.-++.--.||.+-. +|..
T Consensus 251 LVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS-AlF~Pf~~LGLIIvDEE-HD~sYK 328 (730)
T COG1198 251 LVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS-ALFLPFKNLGLIIVDEE-HDSSYK 328 (730)
T ss_pred EeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech-hhcCchhhccEEEEecc-cccccc
Confidence 44555566665 3455566678999999999999999999999999999999987 43444444334544321 2221
Q ss_pred --CccccCHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcC
Q 006319 103 --KFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKG 149 (650)
Q Consensus 103 --~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~ 149 (650)
....+...|+-.+.|+-. +..+++.+..+..+.+.+...|
T Consensus 329 q~~~prYhARdvA~~Ra~~~-------~~pvvLgSATPSLES~~~~~~g 370 (730)
T COG1198 329 QEDGPRYHARDVAVLRAKKE-------NAPVVLGSATPSLESYANAESG 370 (730)
T ss_pred CCcCCCcCHHHHHHHHHHHh-------CCCEEEecCCCCHHHHHhhhcC
Confidence 222346777777777643 3346666666565655555444
No 178
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=38.26 E-value=53 Score=37.29 Aligned_cols=86 Identities=19% Similarity=0.126 Sum_probs=62.1
Q ss_pred cCCCchhH---HhHHHH-hccCEEEEcCCCCHHHHHHHHHHHHc-CCCcEEEechhhhcccCCCCceEEEeccccccCCC
Q 006319 29 DDKKLPQV---SNILPL-LKRGIGVHHSGLLPILKEVIEILFQE-GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDK 103 (650)
Q Consensus 29 ~d~~~~~~---~~l~~~-l~~GIg~hH~gl~~~~R~~ve~lF~~-g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~ 103 (650)
.|+.+.+- ..|.++ ++.|=-+.+|..++.+|-.|.+.|+. -.+..+|.+..---.+|+|-.+|+|.=...| |
T Consensus 543 gDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~-G-- 619 (776)
T KOG1123|consen 543 GDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHG-G-- 619 (776)
T ss_pred CCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccc-c--
Confidence 35554443 333333 34577799999999999999999994 5899999998888899999999999743322 2
Q ss_pred ccccCHhHHHhhhccCCC
Q 006319 104 FRWISSGEYIQMSGRAGR 121 (650)
Q Consensus 104 ~~~~~~~e~~qm~GRAGR 121 (650)
+-..=-||.||-=|
T Consensus 620 ----SRRQEAQRLGRILR 633 (776)
T KOG1123|consen 620 ----SRRQEAQRLGRILR 633 (776)
T ss_pred ----chHHHHHHHHHHHH
Confidence 33455678886444
No 179
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=37.08 E-value=17 Score=27.25 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=24.3
Q ss_pred HHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHH
Q 006319 576 EAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLE 609 (650)
Q Consensus 576 ~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~ 609 (650)
.++..+..|.|-.+|++..++...+|=|+++|-.
T Consensus 9 ~ii~l~~~G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 9 QIIRLLREGWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp -HHHHHHHT--HHHHHHHHTS-HHHHHHHHT---
T ss_pred HHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 4566677799999999999999999999999864
No 180
>PRK00254 ski2-like helicase; Provisional
Probab=36.95 E-value=91 Score=37.33 Aligned_cols=172 Identities=17% Similarity=0.143 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhHhCCcCCC----CccchhhhHHhhhcCCchhHHHHHHHhCCC---CCCChhHHHHHhhcceeeccCCCC
Q 006319 457 DELKARKRVLRRLGYATSD----DVVELKGKVACEISSAEELTLTELIFNGVL---KDVKVEEMVSLLSCFVWQEKLQDA 529 (650)
Q Consensus 457 ~e~~~~~~VL~~Lgyid~~----~~vt~KGrvA~eI~s~dELllTEllf~g~f---~~L~p~eiaAllS~fV~qek~~~~ 529 (650)
+..+..+..|.+-|+|+.+ -.+|.-|++++..+- +... .+.+.+.+= .+.+--.+.-++|.. ++.
T Consensus 455 ~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i-~~~t-~~~~~~~l~~~~~~~~~~~~l~~~~~~------~e~ 526 (720)
T PRK00254 455 EKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYI-DPLT-AKKFKDAFPKIEKNPNPLGIFQLIAST------PDM 526 (720)
T ss_pred HHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhC-CHHH-HHHHHHHHHhhccCCCHHHHHHHhhCC------ccc
Confidence 4566677889999998642 357999999998763 3322 233322221 122222333333221 111
Q ss_pred CCC---cHHHHHHHHHHHHHHHHHH-HHHHHcCCCccc-ccccc-cCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHH
Q 006319 530 SKP---REELELLFTQLQDTARRVA-KVQLECKVQIDV-EGFVN-SFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIR 603 (650)
Q Consensus 530 ~~l---~~~L~~~~~~l~~~a~~I~-~v~~e~~l~i~~-~~y~~-~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR 603 (650)
..+ ..+... +.+.+..+. ++. ..++... .+|.. -.++.-.-+.++|.+|.+...|++.-++..||+-+
T Consensus 527 ~~~~~r~~e~~~----l~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~ 600 (720)
T PRK00254 527 TPLNYSRKEMED----LLDEAYEMEDRLY--FNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYR 600 (720)
T ss_pred cccCcchhhHHH----HHHHHHhhccccc--ccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHH
Confidence 111 112111 222222111 000 1122211 11111 02344567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCC-HHHHHHHHHHHHhhcCCe
Q 006319 604 AIRRLEEVLQQLILAAKSIGE-TELEAKFEEAVSKIKRDI 642 (650)
Q Consensus 604 ~irRL~Ellrq~~~Aa~~iGn-~~L~~k~~~a~~~IkRdI 642 (650)
.+.+..-++.-+...++.+|. .++...+.+.+..|+=++
T Consensus 601 ~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~ 640 (720)
T PRK00254 601 ILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGV 640 (720)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCC
Confidence 999999999999988888884 566666665555555444
No 181
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=36.01 E-value=92 Score=39.05 Aligned_cols=104 Identities=13% Similarity=0.254 Sum_probs=62.4
Q ss_pred hhcCCccCCCchhHHh---HHHHhc-----cCEEE--EcCCCCHHHHHHHHHHHHcC--CCcEEEechhhhcccCCCC-c
Q 006319 23 MDMLSDDDKKLPQVSN---ILPLLK-----RGIGV--HHSGLLPILKEVIEILFQEG--LIKCLFATETFSIGLNMPA-K 89 (650)
Q Consensus 23 i~~l~~~d~~~~~~~~---l~~~l~-----~GIg~--hH~gl~~~~R~~ve~lF~~g--~i~vLvaT~tla~Gin~pa-~ 89 (650)
+++|..+...+-.+.+ +.+.|. +|.-| ..|.-.-+.|....+.|... ..-.+.+|..-+.|||+-. .
T Consensus 1269 LqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgAD 1348 (1958)
T KOG0391|consen 1269 LQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGAD 1348 (1958)
T ss_pred HHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCc
Confidence 3455666555444333 333332 24333 35788889999999999854 3456778999999999875 7
Q ss_pred eEEEeccccccCCCccccC--HhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 90 TVVFTNVRKFDGDKFRWIS--SGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 90 ~VVi~~~~k~dg~~~~~~~--~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+|||++.. |++ -++ ..|--||+|++ ..-+.|=+.++.
T Consensus 1349 TVvFYDsD-wNP----tMDaQAQDrChRIGqt------RDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1349 TVVFYDSD-WNP----TMDAQAQDRCHRIGQT------RDVHIYRLISER 1387 (1958)
T ss_pred eEEEecCC-CCc----hhhhHHHHHHHhhcCc------cceEEEEeeccc
Confidence 78876542 221 122 34455555543 445555555544
No 182
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.76 E-value=2.8e+02 Score=32.98 Aligned_cols=136 Identities=14% Similarity=0.115 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhHhCCcCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhH---HHHHhhcceeeccCCCCCCCc
Q 006319 457 DELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEE---MVSLLSCFVWQEKLQDASKPR 533 (650)
Q Consensus 457 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~e---iaAllS~fV~qek~~~~~~l~ 533 (650)
+.+.+-+..|--||-+|..|.+|=-||--||.- +|..+--.++-++... ..+| |||+||+.-.- ...+.
T Consensus 652 etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP-~dPmlsKmi~as~ky~--cs~EiitiaamlS~~~sv-----fyrpk 723 (902)
T KOG0923|consen 652 ETLLKALEQLYALGALNHLGELTKLGRRMAEFP-VDPMLSKMIVASEKYK--CSEEIITIAAMLSVGASV-----FYRPK 723 (902)
T ss_pred HHHHHHHHHHHHhhccccccchhhhhhhhhhcC-CCHHHHhHHhhhcccc--chHHHHHHHHHHhcCchh-----eecch
Confidence 455666788889999999999999999999998 5888888888888776 3355 45666665321 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCccHHHHHHHHhC-CCCHHHHHhhCCCCCChHHHHHHHHHHHH
Q 006319 534 EELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAK-GSKFYEIMEITPVFEGSLIRAIRRLEEVL 612 (650)
Q Consensus 534 ~~L~~~~~~l~~~a~~I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~-G~~F~eI~~~Tdl~EG~IVR~irRL~Ell 612 (650)
. +. ++.. -..-....+..+ +-.++.|-..|.. +.+++-++++ +.-.|++.|.-+++
T Consensus 724 ~-------~~--v~ad----~a~~~f~~~~gD-----hi~~L~vyn~w~es~~s~~wC~e~-----~iq~~sm~rardir 780 (902)
T KOG0923|consen 724 D-------KQ--VHAD----NARKNFEEPVGD-----HIVLLNVYNQWKESKYSTQWCYEN-----FIQYRSMKRARDIR 780 (902)
T ss_pred h-------hh--hhhh----hhhhccCCCCcc-----hhhhhHHHHHHhhcchhhHHHHHh-----hhhHHHHHHHHHHH
Confidence 1 00 0000 001112222222 3357888888864 4555555555 56689999999999
Q ss_pred HHHHHhhhhcC
Q 006319 613 QQLILAAKSIG 623 (650)
Q Consensus 613 rq~~~Aa~~iG 623 (650)
.|+-....-++
T Consensus 781 ~qL~gll~~v~ 791 (902)
T KOG0923|consen 781 DQLEGLLERVE 791 (902)
T ss_pred HHHHHHhhhcc
Confidence 99988765333
No 183
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=33.90 E-value=84 Score=37.03 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=40.0
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhc-ccCCCC-ceEEEe
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSI-GLNMPA-KTVVFT 94 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~-Gin~pa-~~VVi~ 94 (650)
..++..||+++...|..+.....+|.++|+|+|..+-. .+++.. ..|||.
T Consensus 313 i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIID 364 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEe
Confidence 45789999999999999999999999999999997665 355555 344444
No 184
>PRK12543 RNA polymerase sigma factor; Provisional
Probab=33.75 E-value=54 Score=31.51 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=36.9
Q ss_pred HhCCCCHHHHHhhCCCCCCh----HHHHHHHHHHHHHHHHHhhhhcCC
Q 006319 581 WAKGSKFYEIMEITPVFEGS----LIRAIRRLEEVLQQLILAAKSIGE 624 (650)
Q Consensus 581 WA~G~~F~eI~~~Tdl~EG~----IVR~irRL~Ellrq~~~Aa~~iGn 624 (650)
--.|.|..||-+.+++++|+ +-|+.++|-+.|.+....=+-+||
T Consensus 130 ~~e~~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~~~~~~~~~ 177 (179)
T PRK12543 130 YLHDYSQEEIAQLLQIPIGTVKSRIHAALKKLRQKEQIEEIFLGEVGN 177 (179)
T ss_pred HHccCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34899999999999999999 778888888888887777666666
No 185
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=31.68 E-value=69 Score=29.76 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhCCc----CCCC------ccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcc
Q 006319 456 KDELKARKRVLRRLGYA----TSDD------VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 520 (650)
Q Consensus 456 ~~e~~~~~~VL~~Lgyi----d~~~------~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~f 520 (650)
.+..-+.++-|.+.||| |.++ .+|.||+-+.+--. -.+.+-+...+|.+++++|++++...+
T Consensus 68 ~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~~~~---~~~~~~~~~~l~~~ls~ee~~~l~~~L 139 (144)
T PRK11512 68 LGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCH---QLVGQDLHQELTKNLTADEVATLEHLL 139 (144)
T ss_pred HHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHHHHH---HHHHHHHHHHHHccCCHHHHHHHHHHH
No 186
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=30.42 E-value=55 Score=24.23 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=22.9
Q ss_pred HHHHHhCCCCHHHHHhhCCCCCChHHHHHHH
Q 006319 577 AVYAWAKGSKFYEIMEITPVFEGSLIRAIRR 607 (650)
Q Consensus 577 vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irR 607 (650)
+..-|..|.|..+|-+.-+....+|-|.|+|
T Consensus 13 I~~l~~~G~s~~~IA~~lg~s~sTV~relkR 43 (44)
T PF13936_consen 13 IEALLEQGMSIREIAKRLGRSRSTVSRELKR 43 (44)
T ss_dssp HHHHHCS---HHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCcCcHHHHHHHhc
Confidence 4455789999999999999999999999987
No 187
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.60 E-value=53 Score=36.66 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCC-CCChHHHHHHHHHHHHH
Q 006319 535 ELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPV-FEGSLIRAIRRLEEVLQ 613 (650)
Q Consensus 535 ~L~~~~~~l~~~a~~I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl-~EG~IVR~irRL~Ellr 613 (650)
+|..+-..+.+++++|. +...|+-+--.+-|...++-..+.++-+|+.|-+..+.++...+ .|=-|+ +| +|
T Consensus 47 ~Le~~~deIediqqei~-~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~~~~~~~E~~i~-~i------lr 118 (467)
T KOG0201|consen 47 DLEEAEDEIEDIQQEIS-VLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLKSGNILDEFEIA-VI------LR 118 (467)
T ss_pred chhhcchhhHHHHHHHH-HHHhcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhccCCCCccceee-ee------hH
Confidence 46667777888888874 44555543222445666888899999999999999999999877 332222 11 22
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHhhcCCeeeccCC
Q 006319 614 QLILAAKSIGETELEAKFEEAVSKIKRDIVFAASL 648 (650)
Q Consensus 614 q~~~Aa~~iGn~~L~~k~~~a~~~IkRdIVfa~SL 648 (650)
++ -...++.-....|.|||-.|+=|
T Consensus 119 e~----------l~~l~ylH~~~kiHrDIKaanil 143 (467)
T KOG0201|consen 119 EV----------LKGLDYLHSEKKIHRDIKAANIL 143 (467)
T ss_pred HH----------HHHhhhhhhcceeccccccccee
Confidence 22 23456677778899999876543
No 188
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=28.77 E-value=1.4e+02 Score=26.54 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 548 RRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 548 ~~I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
..+......+|+... + +.++..++. ..|.+..+|++...+.-+++.|.+.+|++
T Consensus 15 ~~~~~~l~~~~lt~~--q------~~iL~~l~~-~~~~t~~ela~~~~~~~~tvs~~l~~Le~ 68 (118)
T TIGR02337 15 SFFRPILAQHGLTEQ--Q------WRILRILAE-QGSMEFTQLANQACILRPSLTGILARLER 68 (118)
T ss_pred HHHHHHHHHcCCCHH--H------HHHHHHHHH-cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 334444555666432 1 235554433 56789999999999999999999999986
No 189
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=27.95 E-value=94 Score=28.73 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhHhCCcCC----CC------ccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcc
Q 006319 456 KDELKARKRVLRRLGYATS----DD------VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 520 (650)
Q Consensus 456 ~~e~~~~~~VL~~Lgyid~----~~------~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~f 520 (650)
.+..-+.++-|.+.|||.. ++ .+|.||+-..+-- .-..+-+...+|.+++++|+..+...+
T Consensus 60 ~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~----~~~~~~~~~~~~~~l~~ee~~~l~~~l 130 (144)
T PRK03573 60 QPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISEV----EAVINKTRAEILHGISAEEIEQLITLI 130 (144)
T ss_pred hhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3567788999999999953 11 4999999876542 123344666688999999998887654
No 190
>smart00351 PAX Paired Box domain.
Probab=25.46 E-value=87 Score=28.71 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=30.2
Q ss_pred HHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 576 EAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 576 ~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
.+|..+..|.+..+|++...+..+++.||++|-.+
T Consensus 25 riv~~~~~G~s~~~iA~~~gvs~~tV~kwi~r~~~ 59 (125)
T smart00351 25 RIVELAQNGVRPCDISRQLCVSHGCVSKILGRYYE 59 (125)
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666679999999999999999999999998754
No 191
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=24.23 E-value=1.7e+02 Score=27.04 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 574 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 574 Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
++..++..-.|.+..+|.+.+.+..+++-|.+.||++
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~~~~tvt~~v~~Le~ 72 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 4444443334689999999999999999999999986
No 192
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=23.32 E-value=88 Score=23.16 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=25.8
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHH
Q 006319 573 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAI 605 (650)
Q Consensus 573 ~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~i 605 (650)
..-.++..++.|+|-.+|++.+++.-.+|=|.+
T Consensus 10 ~~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l 42 (45)
T PF02796_consen 10 QIEEIKELYAEGMSIAEIAKQFGVSRSTVYRYL 42 (45)
T ss_dssp CHHHHHHHHHTT--HHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHH
Confidence 466788889999999999999999988887765
No 193
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=22.56 E-value=1.2e+02 Score=38.66 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=44.5
Q ss_pred HHHHHHHHHhHhCCcCCCC---ccchhhhHHhhhcCCchhHHHHHHHhCC-CCCCChhHHHHHhhcceee
Q 006319 458 ELKARKRVLRRLGYATSDD---VVELKGKVACEISSAEELTLTELIFNGV-LKDVKVEEMVSLLSCFVWQ 523 (650)
Q Consensus 458 e~~~~~~VL~~Lgyid~~~---~vt~KGrvA~eI~s~dELllTEllf~g~-f~~L~p~eiaAllS~fV~q 523 (650)
.+.+-+..|..||.||+++ .+|.-||..+++-- | --++-||..+. |.-+ .+++.+.|++-.+
T Consensus 450 ~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPl-d-PrlarmLl~a~~~gcl--~e~l~IaA~Ls~~ 515 (1283)
T TIGR01967 450 AIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPV-D-PRLARMLLEAHRLGCL--QEVLIIASALSIQ 515 (1283)
T ss_pred HHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCC-C-hHHHHHHHHhhhcCCH--HHHHHHHHHHcCC
Confidence 4677789999999999887 79999999999973 4 45566666554 4433 4455555655443
No 194
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=21.93 E-value=89 Score=24.19 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=34.2
Q ss_pred CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHH
Q 006319 570 FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVL 612 (650)
Q Consensus 570 ~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ell 612 (650)
|.+.=.+|+..|+.|.+-.+|.+.-++.+.+|-..++++-.-+
T Consensus 4 LT~~E~~vl~~l~~G~~~~eIA~~l~is~~tV~~~~~~i~~Kl 46 (58)
T PF00196_consen 4 LTERELEVLRLLAQGMSNKEIAEELGISEKTVKSHRRRIMKKL 46 (58)
T ss_dssp S-HHHHHHHHHHHTTS-HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCcchhHHhcCcchhhHHHHHHHHHHHh
Confidence 4455578999999999999999999999999988877765443
No 195
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=21.44 E-value=1.7e+02 Score=27.00 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=44.5
Q ss_pred ccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCCeeec
Q 006319 572 PDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFA 645 (650)
Q Consensus 572 ~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~~~a~~~IkRdIVfa 645 (650)
++|.+++.+|.....+-+.+-..+=..|. +++.+++.+..+. +..+.+++.+..+.=.+||||.
T Consensus 4 ~nL~~~~l~~l~~~~~~d~~~~~E~~~g~--------~~~~~~l~~~l~~--~~~i~~~i~~~~~~~~~~vv~l 67 (126)
T PF08747_consen 4 INLYEIFLEILEERGILDKIIEMEEKKGS--------DALLKQLQGILDM--QEKIAEYIQEELEDDDRDVVFL 67 (126)
T ss_pred EEHHHHHHHHHHhcChHHHHHHHHHhhhH--------HHHHHHHHHHhhh--HHHHHHHHHHhccCCCCcEEEE
Confidence 56888888888888766554444333443 5566666666533 6788888888877788999994
No 196
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=21.39 E-value=54 Score=34.70 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhchhcchhHHHHHHHHHHHhHhCCcCCCCccchhhhHHh
Q 006319 435 ELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVAC 486 (650)
Q Consensus 435 ~l~~~~~~l~~~l~~~~~~~~~~e~~~~~~VL~~Lgyid~~~~vt~KGrvA~ 486 (650)
+|.+|.++|+.++++......--++.++..=|..+|.+.-...-+|||..+.
T Consensus 6 ~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~~~~rr~LkGH~~K 57 (343)
T KOG0286|consen 6 QLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQMRTRRTLKGHLNK 57 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeeeeeeEEEecccccc
Confidence 3444444444444443222222345556666777777776677889998773
No 197
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=21.26 E-value=2.1e+02 Score=34.44 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=58.4
Q ss_pred EcCCCCHHHHHHHHHHHHcCC-Cc-EEEechhhhcccCCCC-ceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCC
Q 006319 50 HHSGLLPILKEVIEILFQEGL-IK-CLFATETFSIGLNMPA-KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDE 126 (650)
Q Consensus 50 hH~gl~~~~R~~ve~lF~~g~-i~-vLvaT~tla~Gin~pa-~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~ 126 (650)
.-|.-+-..|......|.++. +. .|.+|..-+.|+|+-. ..|||.+. .-+|+.=.|-.-||=|-|...
T Consensus 577 mDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDP---------dWNPStD~QAreRawRiGQkk 647 (923)
T KOG0387|consen 577 MDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDP---------DWNPSTDNQARERAWRIGQKK 647 (923)
T ss_pred ecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECC---------CCCCccchHHHHHHHhhcCcc
Confidence 467777889999999999874 44 4668888999999886 67777643 235666689999999999766
Q ss_pred ceEEEEeecCC
Q 006319 127 RGICILMVDDK 137 (650)
Q Consensus 127 ~G~~ii~~~~~ 137 (650)
.-.+|=+....
T Consensus 648 dV~VYRL~t~g 658 (923)
T KOG0387|consen 648 DVVVYRLMTAG 658 (923)
T ss_pred ceEEEEEecCC
Confidence 55555444433
No 198
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.06 E-value=2.3e+02 Score=27.22 Aligned_cols=42 Identities=14% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHh
Q 006319 195 DLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDI 238 (650)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 238 (650)
.+++++.++.+++..+...+ .++.|..+++++.++++++...
T Consensus 44 ~l~~Ei~~l~~E~~~iS~qD--eFAkwaKl~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 44 QLRKEILQLKRELNAISAQD--EFAKWAKLNRKLDKLEEELEKL 85 (161)
T ss_dssp HHHHHHHHHHHHHTTS-TTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHHHHHHHHH
No 199
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=21.06 E-value=1e+02 Score=39.09 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=31.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhc
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSI 82 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~ 82 (650)
++.+|||++...+......+++|..+|||+|+-...
T Consensus 155 i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~ 190 (1171)
T TIGR01054 155 IGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLS 190 (1171)
T ss_pred eeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHH
Confidence 567899999999988888899999999999986543
No 200
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=20.13 E-value=2.7e+02 Score=23.75 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=37.1
Q ss_pred CCCCHHHHHhhCC-CCCChHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHh
Q 006319 583 KGSKFYEIMEITP-VFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSK 637 (650)
Q Consensus 583 ~G~~F~eI~~~Td-l~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~~~a~~~ 637 (650)
.|.|+.+|=+.-+ ..--+++..++|+++.+.+ |+.|...++.....
T Consensus 43 ~~~s~~~Ig~~fg~r~hStV~~a~~ri~~~~~~---------d~~~~~~v~~i~~~ 89 (90)
T cd06571 43 TGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEE---------DPELKEDVEELEKK 89 (90)
T ss_pred hCCCHHHHHHHhCCCCHhHHHHHHHHHHHHHHh---------CHHHHHHHHHHHHh
Confidence 4999999999988 9999999999999998764 56666666655443
Done!