Query 006319
Match_columns 650
No_of_seqs 293 out of 2242
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xgj_A ATP-dependent RNA helic 100.0 3E-118 1E-122 1071.5 64.3 637 2-650 364-1010(1010)
2 3l9o_A ATP-dependent RNA helic 100.0 2E-120 7E-125 1098.8 39.3 636 3-650 463-1108(1108)
3 4a4z_A Antiviral helicase SKI2 100.0 4E-113 1E-117 1027.0 54.4 619 1-650 356-997 (997)
4 4f92_B U5 small nuclear ribonu 99.9 2.6E-22 9E-27 251.3 15.9 150 37-188 1206-1362(1724)
5 4f92_B U5 small nuclear ribonu 99.9 3.6E-22 1.2E-26 250.1 15.4 152 35-188 369-527 (1724)
6 2zj8_A DNA helicase, putative 99.8 2.9E-19 1E-23 208.3 21.9 156 35-190 285-447 (720)
7 2p6r_A Afuhel308 helicase; pro 99.8 5E-19 1.7E-23 205.7 19.1 182 7-189 250-447 (702)
8 2va8_A SSO2462, SKI2-type heli 99.8 1.1E-18 3.7E-23 203.2 18.9 153 35-187 303-466 (715)
9 3rc3_A ATP-dependent RNA helic 99.6 1.2E-14 4E-19 167.7 13.2 111 44-156 344-462 (677)
10 2rb4_A ATP-dependent RNA helic 99.5 2E-14 7E-19 138.0 11.5 95 44-145 58-154 (175)
11 2hjv_A ATP-dependent RNA helic 99.5 4.9E-14 1.7E-18 133.8 13.0 92 44-146 59-150 (163)
12 1fuk_A Eukaryotic initiation f 99.5 5.4E-14 1.8E-18 133.7 10.8 101 44-155 54-157 (165)
13 1t5i_A C_terminal domain of A 99.5 3.3E-14 1.1E-18 136.5 8.9 84 44-137 55-138 (172)
14 3eaq_A Heat resistant RNA depe 99.5 1.3E-13 4.3E-18 137.0 12.5 84 44-137 55-138 (212)
15 2p6n_A ATP-dependent RNA helic 99.5 2E-13 6.9E-18 133.5 12.9 88 44-141 78-165 (191)
16 2jgn_A DBX, DDX3, ATP-dependen 99.4 1.3E-13 4.3E-18 134.1 9.0 84 44-137 70-153 (185)
17 3i32_A Heat resistant RNA depe 99.4 9.2E-13 3.1E-17 137.8 11.2 84 44-137 52-135 (300)
18 3fht_A ATP-dependent RNA helic 99.4 1.5E-12 5E-17 139.9 12.3 94 44-143 290-385 (412)
19 2db3_A ATP-dependent RNA helic 99.4 1.5E-12 5.1E-17 142.8 12.5 84 44-137 324-407 (434)
20 1oyw_A RECQ helicase, ATP-depe 99.4 1.3E-12 4.5E-17 146.8 12.1 95 44-149 260-354 (523)
21 2yjt_D ATP-dependent RNA helic 99.1 4.6E-14 1.6E-18 135.0 0.0 84 44-137 54-137 (170)
22 3i5x_A ATP-dependent RNA helic 99.4 1.4E-12 4.7E-17 147.2 11.6 93 44-147 366-458 (563)
23 3pey_A ATP-dependent RNA helic 99.3 4.5E-12 1.5E-16 134.9 13.8 89 44-137 267-356 (395)
24 1s2m_A Putative ATP-dependent 99.3 2.9E-12 9.8E-17 137.6 12.3 92 44-146 282-373 (400)
25 2i4i_A ATP-dependent RNA helic 99.3 2.2E-12 7.4E-17 139.1 11.4 84 44-137 300-383 (417)
26 2j0s_A ATP-dependent RNA helic 99.3 3E-12 1E-16 138.0 11.4 84 44-137 300-383 (410)
27 2v1x_A ATP-dependent DNA helic 99.3 3.4E-12 1.2E-16 145.5 11.7 94 44-148 291-384 (591)
28 2z0m_A 337AA long hypothetical 99.3 6.4E-12 2.2E-16 131.0 12.2 98 36-146 233-330 (337)
29 1hv8_A Putative ATP-dependent 99.3 6.8E-12 2.3E-16 132.2 12.2 84 44-137 262-345 (367)
30 1xti_A Probable ATP-dependent 99.3 6.2E-12 2.1E-16 134.2 11.4 93 44-146 274-366 (391)
31 3sqw_A ATP-dependent RNA helic 99.3 5.6E-12 1.9E-16 143.1 11.6 94 44-148 315-408 (579)
32 3eiq_A Eukaryotic initiation f 99.3 2.4E-12 8.1E-17 138.5 6.5 84 44-137 304-387 (414)
33 3fmp_B ATP-dependent RNA helic 99.3 5.2E-13 1.8E-17 147.7 0.0 94 43-142 356-451 (479)
34 3fho_A ATP-dependent RNA helic 99.2 1E-11 3.4E-16 139.0 6.2 113 35-153 372-489 (508)
35 1fuu_A Yeast initiation factor 99.1 4.9E-12 1.7E-16 135.0 0.0 83 45-137 284-366 (394)
36 2xau_A PRE-mRNA-splicing facto 99.1 7E-11 2.4E-15 138.6 6.6 89 45-136 339-442 (773)
37 1wp9_A ATP-dependent RNA helic 99.1 3.3E-10 1.1E-14 122.9 10.6 84 44-138 385-476 (494)
38 1gm5_A RECG; helicase, replica 99.0 7.5E-11 2.6E-15 138.0 5.1 83 45-136 614-696 (780)
39 3oiy_A Reverse gyrase helicase 99.0 1.9E-10 6.5E-15 124.5 7.9 79 44-136 276-364 (414)
40 1yks_A Genome polyprotein [con 99.0 1.1E-10 3.7E-15 128.4 6.0 86 44-134 201-296 (440)
41 1c4o_A DNA nucleotide excision 99.0 5.4E-10 1.9E-14 129.0 11.7 86 45-137 464-550 (664)
42 2v6i_A RNA helicase; membrane, 99.0 6E-10 2.1E-14 122.1 8.2 87 44-135 195-289 (431)
43 2fwr_A DNA repair protein RAD2 99.0 3.7E-10 1.3E-14 124.4 6.4 91 37-137 363-454 (472)
44 2eyq_A TRCF, transcription-rep 99.0 1.3E-09 4.5E-14 132.9 11.8 84 44-137 838-922 (1151)
45 4a2p_A RIG-I, retinoic acid in 99.0 2.8E-10 9.5E-15 127.2 5.4 81 45-137 427-508 (556)
46 4gl2_A Interferon-induced heli 99.0 3.9E-10 1.3E-14 130.3 6.3 71 45-123 431-509 (699)
47 2d7d_A Uvrabc system protein B 99.0 1.8E-09 6.1E-14 124.6 11.7 94 37-137 459-556 (661)
48 2oca_A DAR protein, ATP-depend 98.9 9.7E-10 3.3E-14 122.3 8.6 83 35-125 359-445 (510)
49 3tbk_A RIG-I helicase domain; 98.9 2.2E-10 7.4E-15 127.7 2.5 81 45-137 426-507 (555)
50 2z83_A Helicase/nucleoside tri 98.9 4.4E-10 1.5E-14 124.2 4.2 89 44-137 214-313 (459)
51 2wv9_A Flavivirin protease NS2 98.9 2.5E-09 8.6E-14 123.4 10.5 86 44-134 434-530 (673)
52 2jlq_A Serine protease subunit 98.9 1.9E-09 6.5E-14 118.8 8.7 86 45-136 213-310 (451)
53 2whx_A Serine protease/ntpase/ 98.9 1.9E-09 6.3E-14 123.5 8.7 87 44-135 379-476 (618)
54 3dmq_A RNA polymerase-associat 98.9 4.6E-09 1.6E-13 126.2 11.6 104 36-147 516-625 (968)
55 4a2q_A RIG-I, retinoic acid in 98.8 1.4E-09 4.9E-14 128.0 4.1 81 45-137 668-749 (797)
56 2ykg_A Probable ATP-dependent 98.8 7.3E-10 2.5E-14 128.0 1.0 75 51-137 441-516 (696)
57 1z5z_A Helicase of the SNF2/RA 98.8 1.2E-08 4E-13 105.1 8.8 86 44-137 137-224 (271)
58 3o8b_A HCV NS3 protease/helica 98.7 9E-09 3.1E-13 117.9 7.6 83 44-137 420-514 (666)
59 4a2w_A RIG-I, retinoic acid in 98.7 4E-09 1.4E-13 126.3 3.6 80 46-137 669-749 (936)
60 1z63_A Helicase of the SNF2/RA 98.7 2.8E-08 9.6E-13 110.2 10.1 99 44-150 366-466 (500)
61 1gku_B Reverse gyrase, TOP-RG; 98.7 1.9E-08 6.4E-13 121.8 8.3 56 37-97 289-352 (1054)
62 4ddu_A Reverse gyrase; topoiso 98.6 6.7E-08 2.3E-12 117.3 8.5 88 44-137 333-492 (1104)
63 1tf5_A Preprotein translocase 98.5 6.2E-08 2.1E-12 112.6 6.9 90 36-137 445-545 (844)
64 3jux_A Protein translocase sub 98.5 1.6E-07 5.4E-12 107.4 9.1 90 36-137 487-587 (822)
65 3h1t_A Type I site-specific re 98.5 2.3E-07 7.8E-12 105.3 10.2 70 47-125 474-546 (590)
66 1z3i_X Similar to RAD54-like; 98.4 9.3E-07 3.2E-11 101.6 13.5 86 44-137 440-528 (644)
67 2fsf_A Preprotein translocase 98.3 4.1E-07 1.4E-11 105.6 7.0 90 36-137 454-583 (853)
68 1nkt_A Preprotein translocase 98.3 3.5E-06 1.2E-10 98.2 13.8 90 36-137 473-617 (922)
69 3mwy_W Chromo domain-containin 98.2 2.9E-06 9.8E-11 100.0 11.2 86 44-137 596-684 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 98.1 1.6E-05 5.4E-10 95.7 13.4 147 58-236 637-793 (1038)
71 2vl7_A XPD; helicase, unknown 93.0 0.067 2.3E-06 59.8 4.7 78 57-137 416-521 (540)
72 2va8_A SSO2462, SKI2-type heli 91.7 0.61 2.1E-05 53.6 10.7 171 458-642 472-652 (715)
73 2p6r_A Afuhel308 helicase; pro 86.7 4.8 0.00016 46.0 13.3 154 456-625 452-614 (702)
74 2zj8_A DNA helicase, putative 85.8 3.6 0.00012 47.2 11.6 173 456-641 453-640 (720)
75 4a15_A XPD helicase, ATP-depen 80.7 1.5 5.2E-05 49.7 5.6 83 52-137 477-584 (620)
76 4dyq_A Gene 1 protein; GP1, oc 78.7 3.4 0.00011 37.4 6.2 66 569-635 12-79 (140)
77 3i4u_A ATP-dependent RNA helic 75.3 21 0.0007 36.0 11.6 135 458-620 19-153 (270)
78 3crv_A XPD/RAD3 related DNA he 67.0 5.3 0.00018 44.4 5.4 88 52-145 422-539 (551)
79 2o8x_A Probable RNA polymerase 61.3 8 0.00027 29.6 4.0 54 568-621 14-68 (70)
80 1p4x_A Staphylococcal accessor 60.7 42 0.0015 33.1 10.2 122 458-611 66-201 (250)
81 2ipc_A Preprotein translocase 57.6 16 0.00055 43.1 7.2 49 38-88 535-585 (997)
82 1tc3_C Protein (TC3 transposas 54.1 8 0.00028 26.9 2.7 34 575-608 12-45 (51)
83 1xsv_A Hypothetical UPF0122 pr 51.7 41 0.0014 28.9 7.4 68 569-639 25-93 (113)
84 3idw_A Actin cytoskeleton-regu 51.1 8.3 0.00028 30.9 2.4 24 589-612 42-65 (72)
85 2elh_A CG11849-PA, LD40883P; s 49.0 2.2 7.6E-05 35.1 -1.3 49 570-618 23-72 (87)
86 2xau_A PRE-mRNA-splicing facto 44.1 20 0.00069 41.6 5.3 61 457-518 489-550 (773)
87 3hug_A RNA polymerase sigma fa 37.9 32 0.0011 28.1 4.2 49 569-617 37-86 (92)
88 1fse_A GERE; helix-turn-helix 37.3 32 0.0011 26.3 4.0 46 568-613 10-55 (74)
89 3jw4_A Transcriptional regulat 35.8 59 0.002 28.4 6.0 53 550-610 30-83 (148)
90 1zhc_A Hypothetical protein HP 35.5 84 0.0029 25.2 6.2 61 388-449 9-69 (76)
91 1je8_A Nitrate/nitrite respons 34.1 32 0.0011 27.5 3.6 48 566-613 18-65 (82)
92 4aik_A Transcriptional regulat 33.9 57 0.0019 29.1 5.6 61 456-520 60-130 (151)
93 1jko_C HIN recombinase, DNA-in 33.5 18 0.00062 25.3 1.8 34 575-608 12-45 (52)
94 3ech_A MEXR, multidrug resista 33.0 1.3E+02 0.0045 25.8 7.9 36 574-610 42-77 (142)
95 3bdd_A Regulatory protein MARR 33.0 66 0.0023 27.5 5.8 62 540-610 9-71 (142)
96 2jpc_A SSRB; DNA binding prote 32.1 41 0.0014 24.7 3.7 37 576-612 5-41 (61)
97 1s7o_A Hypothetical UPF0122 pr 30.8 1.1E+02 0.0038 26.1 6.7 50 569-618 22-72 (113)
98 3g3z_A NMB1585, transcriptiona 28.4 86 0.0029 27.1 5.8 52 550-610 20-71 (145)
99 1gm5_A RECG; helicase, replica 27.8 85 0.0029 36.4 7.0 50 45-94 446-496 (780)
100 3u2r_A Regulatory protein MARR 27.1 1.1E+02 0.0037 27.3 6.3 38 573-610 50-88 (168)
101 1x3u_A Transcriptional regulat 26.7 33 0.0011 26.8 2.3 44 570-613 17-60 (79)
102 3jw4_A Transcriptional regulat 26.6 91 0.0031 27.1 5.6 60 457-520 72-141 (148)
103 3fm5_A Transcriptional regulat 25.5 80 0.0027 27.5 5.0 38 573-610 43-80 (150)
104 3mzy_A RNA polymerase sigma-H 25.4 55 0.0019 28.7 3.9 49 570-618 110-158 (164)
105 3eco_A MEPR; mutlidrug efflux 25.3 45 0.0015 28.7 3.2 38 573-610 35-73 (139)
106 2gxg_A 146AA long hypothetical 24.9 68 0.0023 27.6 4.4 36 573-610 41-76 (146)
107 3bro_A Transcriptional regulat 24.4 95 0.0032 26.5 5.2 27 584-610 50-76 (141)
108 3c57_A Two component transcrip 24.3 66 0.0023 26.4 3.9 46 568-613 26-71 (95)
109 3oop_A LIN2960 protein; protei 23.9 70 0.0024 27.6 4.3 61 456-520 65-135 (143)
110 4b8x_A SCO5413, possible MARR- 23.6 55 0.0019 28.9 3.5 54 549-610 23-77 (147)
111 2bv6_A MGRA, HTH-type transcri 23.5 1.2E+02 0.0039 26.1 5.6 37 574-611 42-78 (142)
112 2rnj_A Response regulator prot 23.4 51 0.0017 26.7 3.0 47 567-613 27-73 (91)
113 3bja_A Transcriptional regulat 23.1 1.2E+02 0.0043 25.6 5.7 36 574-610 38-73 (139)
114 3nqo_A MARR-family transcripti 23.0 1.1E+02 0.0036 28.3 5.6 68 537-610 15-83 (189)
115 2hr3_A Probable transcriptiona 22.9 1.6E+02 0.0054 25.2 6.5 37 574-610 40-76 (147)
116 1sfx_A Conserved hypothetical 22.6 48 0.0016 26.9 2.7 38 573-611 24-61 (109)
117 3ech_A MEXR, multidrug resista 22.3 57 0.0019 28.2 3.3 60 457-520 66-135 (142)
118 3deu_A Transcriptional regulat 22.0 39 0.0013 30.6 2.2 38 573-610 57-94 (166)
119 2a61_A Transcriptional regulat 21.6 67 0.0023 27.7 3.6 37 573-610 37-73 (145)
120 3deu_A Transcriptional regulat 21.6 79 0.0027 28.5 4.2 61 456-520 82-152 (166)
121 3oop_A LIN2960 protein; protei 21.3 49 0.0017 28.6 2.7 37 573-610 41-77 (143)
122 3eco_A MEPR; mutlidrug efflux 21.2 96 0.0033 26.5 4.6 61 456-520 61-131 (139)
123 3e6m_A MARR family transcripti 21.2 79 0.0027 28.1 4.1 61 456-520 81-151 (161)
124 3fm5_A Transcriptional regulat 21.0 78 0.0027 27.6 3.9 61 456-520 68-138 (150)
125 1ku3_A Sigma factor SIGA; heli 20.8 1.2E+02 0.0042 23.2 4.7 47 567-613 8-59 (73)
126 1ku9_A Hypothetical protein MJ 20.7 71 0.0024 27.5 3.6 53 550-610 15-67 (152)
127 2frh_A SARA, staphylococcal ac 20.3 81 0.0028 27.0 3.8 37 574-610 42-79 (127)
128 1pdn_C Protein (PRD paired); p 20.1 79 0.0027 26.4 3.7 36 575-610 24-59 (128)
129 3f3x_A Transcriptional regulat 20.1 1E+02 0.0035 26.5 4.6 36 574-611 42-77 (144)
No 1
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-118 Score=1071.53 Aligned_cols=637 Identities=45% Similarity=0.764 Sum_probs=593.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCCccCCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhh
Q 006319 2 AKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFS 81 (650)
Q Consensus 2 ~~l~~~~~~e~~~i~~~~~~~i~~l~~~d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla 81 (650)
.++.+++..|+..++.++++.+..|+++|+.++++..+.+++.+||++|||||++.+|+.++.+|++|.++|||||++++
T Consensus 364 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la 443 (1010)
T 2xgj_A 364 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 443 (1010)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGG
T ss_pred HhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccC
Q 006319 82 IGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLS 161 (650)
Q Consensus 82 ~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~ 161 (650)
+|||+|+.+|||.+..+||+.+++|.++.+|+||+|||||+|.|..|.+++++.+..+...+.+++.+.++|+.|+|.++
T Consensus 444 ~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~ 523 (1010)
T 2xgj_A 444 IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLG 523 (1010)
T ss_dssp GSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCC
T ss_pred ccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999887778889999999999999999999
Q ss_pred hHHHHHHHHhcCCChHHHHHhhHHHHHhhcCccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 006319 162 YNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFS 241 (650)
Q Consensus 162 ~~~~l~ll~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 241 (650)
|+|++|+++..+.++++++.++|.+|+.....+.+++++.+++++++.+....+.++.+|+.++.++...++.++..+..
T Consensus 524 ~~~ilnll~~~~~~~e~ll~rsf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 603 (1010)
T 2xgj_A 524 YNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTH 603 (1010)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHCHHHHHHHHHHHHHHHHC-CHHHHHHSSCCCSCTHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCceEEEecCCCCCCCCCCCCCCccceEEEEEeeecccCccCCCCCCCCCCCCceEEEEeecccc--C---
Q 006319 242 PKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVS--K--- 316 (650)
Q Consensus 242 ~~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~gvv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--- 316 (650)
+..++.||+|||+|.++... +.+++||||+++.+.+. +++....+.....|+++|++.|... +
T Consensus 604 ~~~~~~~l~~Gr~v~~~~~~-----------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 671 (1010)
T 2xgj_A 604 PANALSFLQPGRLVEISVNG-----------KDNYGWGAVVDFAKRIN-KRNPSAVYTDHESYIVNVVVNTMYIDSPVNL 671 (1010)
T ss_dssp HHHHGGGCCTTEEEEEEETT-----------TEEEEEEEEEEEEECCC-SSCTTCCCCTTTTEEEEEEEEEEETTSCGGG
T ss_pred cHHHHhhcCCCcEEEEEcCC-----------CCcceeEEEEecccccC-CCccccccccCCceeEEEEeecccccccccc
Confidence 99999999999999999831 47799999999875421 1110112233457999999998421 1
Q ss_pred CC----CCCCcccccCCCCCCCeEEEEecccceeccccceeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC-CCccccc
Q 006319 317 DG----AGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANM 391 (650)
Q Consensus 317 ~~----~~~~~~~p~~~~~~~~~~~~~v~~~~i~~i~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~p-l~~~~~~ 391 (650)
.. ..+....|++++.++.|.++++++++|..|+.+++++|+++++...|+.+.+++.++.+++++++| +||+++|
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1010)
T 2xgj_A 672 LKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNM 751 (1010)
T ss_dssp CCTTCCCCCTTCCBCCTTCCEEEEEEEECGGGEEEEEEEECCCCSSTTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTS
T ss_pred ccccccccccccCCCCCCcCCceEEEEechhhcceeeeeeEecccccCChHHHHHHHHHHHHHHHhcccCCcccCchhhh
Confidence 00 022345566778889999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHHHHhHhCC
Q 006319 392 GIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGY 471 (650)
Q Consensus 392 ~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~e~~~~~~VL~~Lgy 471 (650)
++++.++.+...+++.+++++.+||||+||++++||++++++.+++++++++++++++.+++.+++||++|++||++|||
T Consensus 752 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~ 831 (1010)
T 2xgj_A 752 KIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGF 831 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred cCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 006319 472 ATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVA 551 (650)
Q Consensus 472 id~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~~~~~~l~~~L~~~~~~l~~~a~~I~ 551 (650)
||++++||+||||||||+|+||||+|||||+|+|++|+|+||||+|||||||+|+++.|.++++|.+++++++++|++|+
T Consensus 832 ~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 911 (1010)
T 2xgj_A 832 CTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIA 911 (1010)
T ss_dssp BCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99989999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Q 006319 552 KVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKF 631 (650)
Q Consensus 552 ~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~ 631 (650)
+++.+|++++++++|+++|+|+||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~ 991 (1010)
T 2xgj_A 912 KIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKM 991 (1010)
T ss_dssp HHHHHTTCCCCHHHHHHTSCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHhCCCCChhHhcccCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCeeeccCCCC
Q 006319 632 EEAVSKIKRDIVFAASLYL 650 (650)
Q Consensus 632 ~~a~~~IkRdIVfa~SLYl 650 (650)
++|+++|||||||++||||
T Consensus 992 ~~a~~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A 992 EAVLKLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp HHHHHHHSCGGGGCCCC-C
T ss_pred HHHHHhccCCeEecccccC
Confidence 9999999999999999997
No 2
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-120 Score=1098.80 Aligned_cols=636 Identities=45% Similarity=0.765 Sum_probs=554.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCccCCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhc
Q 006319 3 KLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSI 82 (650)
Q Consensus 3 ~l~~~~~~e~~~i~~~~~~~i~~l~~~d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~ 82 (650)
.+.+++++|+..+..+|++++..+.++|+.++++..+.+.+.+||++|||||++..|+.|+.+|++|.++|||||+++++
T Consensus 463 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~ 542 (1108)
T 3l9o_A 463 KLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSI 542 (1108)
T ss_dssp SHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCS
T ss_pred hccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhc
Confidence 34556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccCh
Q 006319 83 GLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSY 162 (650)
Q Consensus 83 Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~~ 162 (650)
|||+|+.++||++..+||+..++|+++.+|+||+|||||+|.|..|.+++++++......+.+++.+.+.|+.|+|+++|
T Consensus 543 GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y 622 (1108)
T 3l9o_A 543 GLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGY 622 (1108)
T ss_dssp CCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCH
T ss_pred CCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcH
Confidence 99999999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHhhHHHHHhhcCccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCc
Q 006319 163 NMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSP 242 (650)
Q Consensus 163 ~~~l~ll~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 242 (650)
+|++|+++.++.++++++++||++||....++.++++++++++++..+....++++.+|+.+++++...++.++..+.+|
T Consensus 623 ~~ilnll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 702 (1108)
T 3l9o_A 623 NMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHP 702 (1108)
T ss_dssp HHHHHHHHSTTCCHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCceEEEecCCCCCCCCCCCCCCccceEEEEEeeecccCccCCCCCCCCCCCCceEEEEeeccccCCCC---
Q 006319 243 KYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDGA--- 319 (650)
Q Consensus 243 ~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~gvv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 319 (650)
.++++||+|||+|.++.+. +.+||||||+++.+..+.++. .+..+..+.|+++|++.|....+..
T Consensus 703 ~~~~~~l~~G~~v~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 770 (1108)
T 3l9o_A 703 ANALSFLQPGRLVEISVNG-----------KDNYGWGAVVDFAKRINKRNP-SAVYTDHESYIVNVVVNTMYIDSPVNLL 770 (1108)
T ss_dssp HHHHHHCCTTEEEEECCTT-----------CCEEEEEEEEEECCCC------CCSSSSEEEEEECCCSTTCCSCCCSSCT
T ss_pred HHHHhhCCCCCEEEEecCC-----------CcccceEEEEecccccccccc-cccCCCCCceeEEEEecccccccccccc
Confidence 9999999999999998752 368999999998654321111 0111223458999999885321110
Q ss_pred ------CCCcccccCCCCCCCeEEEEecccceeccccceeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC-CCcccccC
Q 006319 320 ------GKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMG 392 (650)
Q Consensus 320 ------~~~~~~p~~~~~~~~~~~~~v~~~~i~~i~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~p-l~~~~~~~ 392 (650)
.+..+.|+..+..+.+.++++++++|..|+++++++|+++++.+.|+.+.+++.++.+++|+++| ++|+++|+
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (1108)
T 3l9o_A 771 KPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMK 850 (1108)
T ss_dssp TTTCCSGGGSSCCSCC---CCCCCCCEESSCEEEEEEEECCCCTTTTSHHHHHHHHHHHHHHHHHCSSCCTTHHHHHHHC
T ss_pred ccccccCCccccCCCcccCCceEEEEechhheeeccceEEecCCCcCCHHHHHHHHHHHHHHHHhcCCCCcccChhhhcc
Confidence 11223355566778999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHHHHhHhCCc
Q 006319 393 IRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYA 472 (650)
Q Consensus 393 i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~e~~~~~~VL~~Lgyi 472 (650)
+.+.++.++..+++.++.++.+||||.||++++||+++++|.+|+++++++++++++.+++.++++|++|++||++||||
T Consensus 851 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~ 930 (1108)
T 3l9o_A 851 IEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFC 930 (1108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 006319 473 TSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAK 552 (650)
Q Consensus 473 d~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~~~~~~l~~~L~~~~~~l~~~a~~I~~ 552 (650)
|++++||+||||||||+|+||||+|||||+|+|++|+|+||||||||||||+|+++.|.++++|+.++.+++++|++|++
T Consensus 931 ~~~~~v~~kgr~a~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 1010 (1108)
T 3l9o_A 931 TPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAK 1010 (1108)
T ss_dssp TTTCCCSHHHHHHHC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHhHHHHHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHH
Q 006319 553 VQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFE 632 (650)
Q Consensus 553 v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~~ 632 (650)
++.+||+++++++|+++|+|+||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||+
T Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~k~~ 1090 (1108)
T 3l9o_A 1011 IMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKME 1090 (1108)
T ss_dssp HHHHTTCSCHHHHHHHHHCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHHHHH
T ss_pred HHHHhCCCCChHHhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCeeeccCCCC
Q 006319 633 EAVSKIKRDIVFAASLYL 650 (650)
Q Consensus 633 ~a~~~IkRdIVfa~SLYl 650 (650)
+|+++|||||||++||||
T Consensus 1091 ~a~~~i~r~iv~~~slyl 1108 (1108)
T 3l9o_A 1091 AVLKLIHRDIVSAGSLYL 1108 (1108)
T ss_dssp HHHHHHHHHTCCCCCCC-
T ss_pred HHHHHhcCCEEeeccccC
Confidence 999999999999999997
No 3
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4e-113 Score=1027.00 Aligned_cols=619 Identities=31% Similarity=0.499 Sum_probs=529.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhcCCccCCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhh
Q 006319 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETF 80 (650)
Q Consensus 1 l~~l~~~~~~e~~~i~~~~~~~i~~l~~~d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tl 80 (650)
|.++.+++++|+..|+.++++++..|+++|+.+|++..+.+++.+||++|||||++.+|+.|+.+|++|.++|||||+++
T Consensus 356 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~ 435 (997)
T 4a4z_A 356 LEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETF 435 (997)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeec-CCCcHHHHHHHhcCCCCccccccc
Q 006319 81 SIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVD-DKMEPSTAKMMLKGSADSLNSAFH 159 (650)
Q Consensus 81 a~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~-~~~~~~~~~~~~~~~~~pl~S~~~ 159 (650)
++|||+|+++||+.+..+|||..++|+++.+|+||+|||||+|.|..|.+++++. +..+...+++++.+.+.++.|+|+
T Consensus 436 a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~ 515 (997)
T 4a4z_A 436 AMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFR 515 (997)
T ss_dssp HHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCC
T ss_pred hCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999984 445778889999999999999999
Q ss_pred cChHHHHHHHHhcCCChHHHHHhhHHHHHhhcCccHHHHHHHHHHHHhccccccch----hhHHHHHHHHHHHHHHHHHH
Q 006319 160 LSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEE----DSLKNYYNLLQQYKSLKKDV 235 (650)
Q Consensus 160 ~~~~~~l~ll~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~y~~~~~~~~~~~~~~ 235 (650)
++|+|++|+++.....+++++.++|.+|+.....+..++.+.++++++..+....+ +++.+|+.++.++..+++.+
T Consensus 516 ~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~c~~c~~~~~~~~~~r~~~~~~~~~~ 595 (997)
T 4a4z_A 516 LTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNL 595 (997)
T ss_dssp CCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999888889999999999999988888888999999999877664443 58899999999999999998
Q ss_pred HHhhcCcccccccCCCCceEEEecCCCCCCCCCCCCCCccceEEEEEeeecccCccCCCCCCCCCCCCceEEEEee--cc
Q 006319 236 RDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTR--CV 313 (650)
Q Consensus 236 ~~~~~~~~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~gvv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~ 313 (650)
.....++.+++++|+|||+|.++++ +.+++||||+++.... + ...+.|++. |.
T Consensus 596 ~~~~~~~~~~~~~l~~gr~v~~~~~------------~~~~~~~~v~~~~~~~----~---------~~~~~v~~~~~~~ 650 (997)
T 4a4z_A 596 MQEMVKSPSILHILKEGRLVAFRDP------------NDCLKLGFVFKVSLKD----A---------VCVIMTFTKPYKL 650 (997)
T ss_dssp HHHHTTSTTHHHHTCTTEEEEEECT------------TCCEEEEEEEEEETTT----T---------EEEEEC-CCCCC-
T ss_pred HHHHhcCHhHHhhCCCCCEEEEecC------------CCCeeEEEEEeeccCC----C---------CCceEEEeccccc
Confidence 7777777789999999999999886 4568899999986431 1 134555543 21
Q ss_pred ccCCCCC-C------Cccccc-CCCCCCCeEEEEecccceeccccceeeCC-CCCC--CHHHHHHHHHHHHHHHHhcCCC
Q 006319 314 VSKDGAG-K------KTLKIV-PLKESGEPLVVSVPISQIIKLSSARLPMP-KDLL--PLQTRENMLKSTSEFLARNASG 382 (650)
Q Consensus 314 ~~~~~~~-~------~~~~p~-~~~~~~~~~~~~v~~~~i~~i~~~~~~~~-~~~~--~~~~r~~~~~~l~~~~~~~~~~ 382 (650)
...+... + ....|. .....+.+.++++++++|..|+++++++| +++. +...++.+.+.+.++.+.
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 726 (997)
T 4a4z_A 651 PNGEPNHLIYFPKADGYRRRNFPKFQKTDFYMEEVPVTAIEVITKRKFAAPLGKVIKKDVAALNEFNAETNNILDG---- 726 (997)
T ss_dssp ---------CCTTCHHHHHHHCCCCCCCCCCEEEEECC-CCEEEEEECC-CHHHHHHTCHHHHHHHHHHHHHHHHS----
T ss_pred cccCccccCCCcccccccccccCcccCCceEEEEeccchhhhhhcccccCChHhhhcCCHHHHHHHHHHHHHHhcc----
Confidence 0000000 0 001111 23456889999999999999999888887 4433 677888888888877554
Q ss_pred CC-CCcccccCCCChHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHH
Q 006319 383 LP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKA 461 (650)
Q Consensus 383 ~p-l~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~e~~~ 461 (650)
| ++|+++|++++.++.+...+++.++.++.+||||+||++++||+++++|.+++++++++++++++ +++.++++|++
T Consensus 727 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 804 (997)
T 4a4z_A 727 -KTLKEAINIEKQGLKIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSD-QNLSLLPDYEK 804 (997)
T ss_dssp -CCCCCC------CCHHHHHHHHHHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHH
T ss_pred -CCCCchhhcccccHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHH
Confidence 5 88999999999999999999999999999999999999999999999999999999999999999 78889999999
Q ss_pred HHHHHhHhCCcCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccC--CCCCCCcHHHHHH
Q 006319 462 RKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKL--QDASKPREELELL 539 (650)
Q Consensus 462 ~~~VL~~Lgyid~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~--~~~~~l~~~L~~~ 539 (650)
|++||++|||||++++||+||||||||+|+|||++|||||+|+|++|+|+||||||||||||+|+ ++.|.++++|+++
T Consensus 805 ~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~ 884 (997)
T 4a4z_A 805 RLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKG 884 (997)
T ss_dssp HHHHHHHTTSBCTTCCBCHHHHHHTTCCSSCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHH
T ss_pred HHHHHHHcCCcCCCCcccHHhHHHhhhcCccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 5558899999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcc--cccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHH
Q 006319 540 FTQLQDTARRVAKVQLECKVQID--VEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLIL 617 (650)
Q Consensus 540 ~~~l~~~a~~I~~v~~e~~l~i~--~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~ 617 (650)
+.+++++|++|++++.+|+++++ +++|+++|+||||+|||+||+|+||++||++||++|||||||||||+|+||||++
T Consensus 885 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~ 964 (997)
T 4a4z_A 885 KQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKT 964 (997)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHGGGSCTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccchhhhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985 4789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCHHHHHHHHHHHHhhcCCeeeccCCCC
Q 006319 618 AAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650 (650)
Q Consensus 618 Aa~~iGn~~L~~k~~~a~~~IkRdIVfa~SLYl 650 (650)
||++|||++|++||++|+++|||||||++||||
T Consensus 965 aa~~~g~~~l~~k~~~a~~~i~R~iv~~~slyl 997 (997)
T 4a4z_A 965 ASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 997 (997)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSCGGGGCCCTTC
T ss_pred HHHhcCCHHHHHHHHHHHHHhcCCeeecccccC
Confidence 999999999999999999999999999999997
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.87 E-value=2.6e-22 Score=251.29 Aligned_cols=150 Identities=23% Similarity=0.368 Sum_probs=128.1
Q ss_pred HhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCcc--ccCHhHHHh
Q 006319 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFR--WISSGEYIQ 114 (650)
Q Consensus 37 ~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~--~~~~~e~~q 114 (650)
..|.+++.+|||+|||||++.+|+.||.+|++|.++|||||+|+|+|||+|+++|||.++++|||+.++ ++++.+|+|
T Consensus 1206 ~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Q 1285 (1724)
T 4f92_B 1206 STLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQ 1285 (1724)
T ss_dssp HHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHH
T ss_pred HHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHH
Confidence 457788999999999999999999999999999999999999999999999999999999999997654 689999999
Q ss_pred hhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccChHHHHHH-HHhcCCC----hHHHHHhhHHHHH
Q 006319 115 MSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQ-IRCEEGS----PENLLRNSFYQFQ 188 (650)
Q Consensus 115 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~~~~~l~l-l~~~~~~----~e~~~~~sf~~~~ 188 (650)
|+|||||+|.|..|.++++|.+. +...+++++ +.+.|++|++.......++. +....+. ..+++..||...+
T Consensus 1286 m~GRAGR~g~d~~G~avll~~~~-~~~~~~~ll-~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r 1362 (1724)
T 4f92_B 1286 MVGHANRPLQDDEGRCVIMCQGS-KKDFFKKFL-YEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRR 1362 (1724)
T ss_dssp HHTTBCCTTTCSCEEEEEEEEGG-GHHHHHHHT-TSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHH
T ss_pred hhccccCCCCCCceEEEEEecch-HHHHHHHHh-CCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHH
Confidence 99999999999999999999887 567777777 45789999998877666654 3333333 4556777776443
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.87 E-value=3.6e-22 Score=250.05 Aligned_cols=152 Identities=25% Similarity=0.383 Sum_probs=126.4
Q ss_pred hHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCC--ccccCHhHH
Q 006319 35 QVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDK--FRWISSGEY 112 (650)
Q Consensus 35 ~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~--~~~~~~~e~ 112 (650)
....+.+++.+|||+|||||++.+|..||.+|++|.++|||||+|+|+|||+||++|||.++++||+.. ..++++.+|
T Consensus 369 ~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~ 448 (1724)
T 4f92_B 369 KNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDI 448 (1724)
T ss_dssp STHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHH
T ss_pred ccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHH
Confidence 346788999999999999999999999999999999999999999999999999999999999999874 357899999
Q ss_pred HhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccChHHHHHHH-HhcCCC----hHHHHHhhHHHH
Q 006319 113 IQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQI-RCEEGS----PENLLRNSFYQF 187 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~~~~~l~ll-~~~~~~----~e~~~~~sf~~~ 187 (650)
+||+|||||+|.|..|.+++++... +...+..++. .+.|++|+|......++|.. ....+. ...++..+|...
T Consensus 449 ~Qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~ll~-~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~ 526 (1724)
T 4f92_B 449 LQMLGRAGRPQYDTKGEGILITSHG-ELQYYLSLLN-QQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYI 526 (1724)
T ss_dssp HHHHTTBSCTTTCSCEEEEEEEEST-TCCHHHHHTT-TCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHH
T ss_pred HHhhhhccCCCCCCccEEEEEecch-hHHHHHHHHc-CCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHH
Confidence 9999999999999999999999877 3445566665 46799999988766666543 223232 344667777654
Q ss_pred H
Q 006319 188 Q 188 (650)
Q Consensus 188 ~ 188 (650)
+
T Consensus 527 r 527 (1724)
T 4f92_B 527 R 527 (1724)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.82 E-value=2.9e-19 Score=208.29 Aligned_cols=156 Identities=26% Similarity=0.373 Sum_probs=129.7
Q ss_pred hHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHh
Q 006319 35 QVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQ 114 (650)
Q Consensus 35 ~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~q 114 (650)
....+.+.+..||++|||||++.+|..|++.|++|.++|||||+++++|||+|+.+|||.++++||+.+..|.+..+|+|
T Consensus 285 ~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Q 364 (720)
T 2zj8_A 285 TNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQ 364 (720)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHH
T ss_pred chHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHH
Confidence 34457888899999999999999999999999999999999999999999999999999999999976677999999999
Q ss_pred hhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccCh---HHHHHHHHhcCC-C---hHHHHHhhHHHH
Q 006319 115 MSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSY---NMLLNQIRCEEG-S---PENLLRNSFYQF 187 (650)
Q Consensus 115 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~~---~~~l~ll~~~~~-~---~e~~~~~sf~~~ 187 (650)
|+|||||+|.|..|.|++++.+......+++++.+.+.|++|++.... ..++..+..... + ...++..+|...
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~ 444 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY 444 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHH
T ss_pred HHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHH
Confidence 999999999999999999988775344566788899999999986532 334444444333 2 455677788876
Q ss_pred Hhh
Q 006319 188 QAD 190 (650)
Q Consensus 188 ~~~ 190 (650)
+..
T Consensus 445 ~~~ 447 (720)
T 2zj8_A 445 QRK 447 (720)
T ss_dssp HCS
T ss_pred hcc
Confidence 643
No 7
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.80 E-value=5e-19 Score=205.73 Aligned_cols=182 Identities=26% Similarity=0.433 Sum_probs=139.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCCccC---------CCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEec
Q 006319 7 TEDDEKVNIETIFWSAMDMLSDDD---------KKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFAT 77 (650)
Q Consensus 7 ~~~~e~~~i~~~~~~~i~~l~~~d---------~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT 77 (650)
.+.++.+.+...+.+.+...-+.+ ........+.+++..||++|||||++.+|..|++.|++|.++|||||
T Consensus 250 ~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT 329 (702)
T 2p6r_A 250 STRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVAT 329 (702)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 456666667776666543221111 12233456778888999999999999999999999999999999999
Q ss_pred hhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccc
Q 006319 78 ETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSA 157 (650)
Q Consensus 78 ~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~ 157 (650)
+++++|||+|+.+|||.++++|||. ..|.+..+|.||+|||||+|.|..|.|++++.+......+++++.+.++|++|.
T Consensus 330 ~~l~~Gidip~~~~VI~~~~~yd~~-~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~ 408 (702)
T 2p6r_A 330 PTLAAGVNLPARRVIVRSLYRFDGY-SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSK 408 (702)
T ss_dssp STTTSSSCCCBSEEEECCSEEESSS-EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCC
T ss_pred cHHhccCCCCceEEEEcCceeeCCC-CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceee
Confidence 9999999999999999999999954 678999999999999999999999999999887743334556788899999999
Q ss_pred cccChH---HHHHHHHhcCC-C---hHHHHHhhHHHHHh
Q 006319 158 FHLSYN---MLLNQIRCEEG-S---PENLLRNSFYQFQA 189 (650)
Q Consensus 158 ~~~~~~---~~l~ll~~~~~-~---~e~~~~~sf~~~~~ 189 (650)
+..... .++.++..... + ..+++..+|...+.
T Consensus 409 l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~ 447 (702)
T 2p6r_A 409 LGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQN 447 (702)
T ss_dssp CCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHH
T ss_pred cCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhh
Confidence 865322 34444444333 2 34456667776553
No 8
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.79 E-value=1.1e-18 Score=203.24 Aligned_cols=153 Identities=32% Similarity=0.502 Sum_probs=116.4
Q ss_pred hHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecccccc---CCCccccCHhH
Q 006319 35 QVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFD---GDKFRWISSGE 111 (650)
Q Consensus 35 ~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~d---g~~~~~~~~~e 111 (650)
....+.+++..||++|||||++.+|..|++.|++|.++|||||+++++|||+|+.+|||.++++|| +....|.+..+
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~ 382 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIME 382 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHH
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHH
Confidence 346678888899999999999999999999999999999999999999999999999999999999 54557899999
Q ss_pred HHhhhccCCCCCCCCceEEEEeecCCCc-HHHHHHHhcCCCCccccccccCh---HHHHHHHHhcCC-C---hHHHHHhh
Q 006319 112 YIQMSGRAGRRGIDERGICILMVDDKME-PSTAKMMLKGSADSLNSAFHLSY---NMLLNQIRCEEG-S---PENLLRNS 183 (650)
Q Consensus 112 ~~qm~GRAGR~g~d~~G~~ii~~~~~~~-~~~~~~~~~~~~~pl~S~~~~~~---~~~l~ll~~~~~-~---~e~~~~~s 183 (650)
|.||+|||||.|.|..|.|++++.+..+ ...+.+++.+.++|++|.+.... ..++.++....+ + ..+++..+
T Consensus 383 ~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~ 462 (715)
T 2va8_A 383 YKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYES 462 (715)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTS
T ss_pred HHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhh
Confidence 9999999999999999999999987642 24566788899999999986532 244444444333 1 33445556
Q ss_pred HHHH
Q 006319 184 FYQF 187 (650)
Q Consensus 184 f~~~ 187 (650)
|...
T Consensus 463 ~~~~ 466 (715)
T 2va8_A 463 LLAK 466 (715)
T ss_dssp SSCH
T ss_pred HHHh
Confidence 6533
No 9
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.55 E-value=1.2e-14 Score=167.71 Aligned_cols=111 Identities=26% Similarity=0.349 Sum_probs=94.4
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHc--CCCcEEEechhhhcccCCCCceEEEecccccc----C-CCccccCHhHHHhhh
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQE--GLIKCLFATETFSIGLNMPAKTVVFTNVRKFD----G-DKFRWISSGEYIQMS 116 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~--g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~d----g-~~~~~~~~~e~~qm~ 116 (650)
..+|++|||+|++.+|+.++..|++ |.++|||||+++++|||++++.||+.+..||+ | ...+|++..+|+||+
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 4689999999999999999999999 99999999999999999999999999998863 2 235689999999999
Q ss_pred ccCCCCCCC-CceEEEEeecCCCcHHHHHHHhcCCCCcccc
Q 006319 117 GRAGRRGID-ERGICILMVDDKMEPSTAKMMLKGSADSLNS 156 (650)
Q Consensus 117 GRAGR~g~d-~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S 156 (650)
|||||.|.+ ..|.+++++... ...+.+++.....++.+
T Consensus 424 GRAGR~g~~g~~G~v~~l~~~d--~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMNHED--LSLLKEILKRPVDPIRA 462 (677)
T ss_dssp TTBTCTTSSCSSEEEEESSTTH--HHHHHHHHHSCCCCCCC
T ss_pred cCCCCCCCCCCCEEEEEEecch--HHHHHHHHhcCcchhhh
Confidence 999999977 469888876553 45778888888888886
No 10
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=137.97 Aligned_cols=95 Identities=22% Similarity=0.310 Sum_probs=73.7
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCC--CccccCHhHHHhhhccCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD--KFRWISSGEYIQMSGRAGR 121 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~--~~~~~~~~e~~qm~GRAGR 121 (650)
..+++++||+|++.+|..+...|++|.++|||||+++++|+|+|+.++||. ||.. .....++.+|+||+|||||
T Consensus 58 ~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~d~p~~~~~~~~~~~~~qr~GR~gR 133 (175)
T 2rb4_A 58 GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN----FDLPVKQGEEPDYETYLHRIGRTGR 133 (175)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE----SSCCC--CCSCCHHHHHHHHCBC--
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE----eCCCCCccccCCHHHHHHHhccccc
Confidence 346899999999999999999999999999999999999999999887776 3321 0111789999999999999
Q ss_pred CCCCCceEEEEeecCCCcHHHHHH
Q 006319 122 RGIDERGICILMVDDKMEPSTAKM 145 (650)
Q Consensus 122 ~g~d~~G~~ii~~~~~~~~~~~~~ 145 (650)
.| ..|.+++++.+. +...+..
T Consensus 134 ~g--~~g~~~~~~~~~-~~~~~~~ 154 (175)
T 2rb4_A 134 FG--KKGLAFNMIEVD-ELPSLMK 154 (175)
T ss_dssp ----CCEEEEEEECGG-GHHHHHH
T ss_pred CC--CCceEEEEEccc-hHHHHHH
Confidence 98 678888888765 3344433
No 11
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.53 E-value=4.9e-14 Score=133.83 Aligned_cols=92 Identities=22% Similarity=0.335 Sum_probs=77.9
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..++..+||+|++.+|..+...|++|.++|||||+++++|+|+|..++||. || .|.++.+|.||+|||||.|
T Consensus 59 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~----~p~~~~~~~qr~GR~~R~g 130 (163)
T 2hjv_A 59 GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN----YD----LPLEKESYVHRTGRTGRAG 130 (163)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SS----CCSSHHHHHHHTTTSSCTT
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE----eC----CCCCHHHHHHhccccCcCC
Confidence 467899999999999999999999999999999999999999998777776 33 3789999999999999999
Q ss_pred CCCceEEEEeecCCCcHHHHHHH
Q 006319 124 IDERGICILMVDDKMEPSTAKMM 146 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~~~~~~~ 146 (650)
..|.+++++.+. +...+..+
T Consensus 131 --~~g~~~~~~~~~-~~~~~~~i 150 (163)
T 2hjv_A 131 --NKGKAISFVTAF-EKRFLADI 150 (163)
T ss_dssp --CCEEEEEEECGG-GHHHHHHH
T ss_pred --CCceEEEEecHH-HHHHHHHH
Confidence 568888877665 44444433
No 12
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.50 E-value=5.4e-14 Score=133.74 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=77.7
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..++..+||+|++.+|..+...|++|.++|||||+++++|+|+|+.++||. || .|.++.+|.||+|||||.|
T Consensus 54 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~----~p~~~~~~~qr~GR~gR~g 125 (165)
T 1fuk_A 54 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YD----LPANKENYIHRIGRGGRFG 125 (165)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SS----CCSSGGGGGGSSCSCC---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE----eC----CCCCHHHHHHHhcccccCC
Confidence 456899999999999999999999999999999999999999999887777 43 3778999999999999999
Q ss_pred CCCceEEEEeecCCCcHHH---HHHHhcCCCCccc
Q 006319 124 IDERGICILMVDDKMEPST---AKMMLKGSADSLN 155 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~~~---~~~~~~~~~~pl~ 155 (650)
..|.+++++.+. +... +.+++.....++.
T Consensus 126 --~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 126 --RKGVAINFVTNE-DVGAMRELEKFYSTQIEELP 157 (165)
T ss_dssp ----CEEEEEEETT-THHHHHHHHHHSSCCCEECC
T ss_pred --CCceEEEEEcch-HHHHHHHHHHHHccCccccC
Confidence 678888887765 3333 3444444444433
No 13
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.50 E-value=3.3e-14 Score=136.53 Aligned_cols=84 Identities=25% Similarity=0.346 Sum_probs=75.5
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..++..+||+|++.+|..+...|++|.++|||||+.+++|+|+|..++||. || .|.++.+|+||+|||||.|
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d----~p~~~~~~~qr~GR~~R~g 126 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YD----MPEDSDTYLHRVARAGRFG 126 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SS----CCSSHHHHHHHHHHHTGGG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE----EC----CCCCHHHHHHHhcccccCC
Confidence 457899999999999999999999999999999999999999999887777 44 3779999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 127 --~~g~~~~~~~~~ 138 (172)
T 1t5i_A 127 --TKGLAITFVSDE 138 (172)
T ss_dssp --CCCEEEEEECSH
T ss_pred --CCcEEEEEEcCh
Confidence 578888888765
No 14
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.49 E-value=1.3e-13 Score=136.98 Aligned_cols=84 Identities=25% Similarity=0.371 Sum_probs=74.8
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..++..+||+|++.+|+.+...|++|.++|||||+++++|+|+|..++||. || .|.++..|+||+|||||.|
T Consensus 55 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~----~p~~~~~~~qr~GR~gR~g 126 (212)
T 3eaq_A 55 GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YR----LPDRAEAYQHRSGRTGRAG 126 (212)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SS----CCSSHHHHHHHHTTBCCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE----CC----CCcCHHHHHHHhcccCCCC
Confidence 457899999999999999999999999999999999999999999888886 33 3779999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 127 --~~g~~~~l~~~~ 138 (212)
T 3eaq_A 127 --RGGRVVLLYGPR 138 (212)
T ss_dssp ----BEEEEEECGG
T ss_pred --CCCeEEEEEchh
Confidence 568999888766
No 15
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.48 E-value=2e-13 Score=133.48 Aligned_cols=88 Identities=26% Similarity=0.323 Sum_probs=73.9
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...+..+||+|++.+|..+...|++|.++|||||+.+++|+|+|..++||. || .|.++.+|.||+|||||.|
T Consensus 78 g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d----~p~~~~~~~qr~GR~gR~g 149 (191)
T 2p6n_A 78 GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN----YD----MPEEIENYVHRIGRTGCSG 149 (191)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----SS----CCSSHHHHHHHHTTSCC--
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----eC----CCCCHHHHHHHhCccccCC
Confidence 456899999999999999999999999999999999999999999887777 44 3788999999999999999
Q ss_pred CCCceEEEEeecCCCcHH
Q 006319 124 IDERGICILMVDDKMEPS 141 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~~ 141 (650)
..|.+++++.+..+..
T Consensus 150 --~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 150 --NTGIATTFINKACDES 165 (191)
T ss_dssp ---CCEEEEEECTTSCHH
T ss_pred --CCcEEEEEEcCchhHH
Confidence 5678887776653333
No 16
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=134.11 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=61.6
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..+++.+||+|++.+|..+...|++|.++|||||+++++|+|+|..++||. || .|.++.+|.||+|||||.|
T Consensus 70 g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d----~p~s~~~~~Qr~GR~~R~g 141 (185)
T 2jgn_A 70 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FD----LPSDIEEYVHRIGRTGRVG 141 (185)
T ss_dssp TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE----SS----CCSSHHHHHHHHTTBCCTT
T ss_pred CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE----eC----CCCCHHHHHHHccccCCCC
Confidence 457899999999999999999999999999999999999999999888887 44 3778999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 142 --~~g~~~~~~~~~ 153 (185)
T 2jgn_A 142 --NLGLATSFFNER 153 (185)
T ss_dssp --SCEEEEEEECGG
T ss_pred --CCcEEEEEEchh
Confidence 578888887655
No 17
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.39 E-value=9.2e-13 Score=137.85 Aligned_cols=84 Identities=24% Similarity=0.372 Sum_probs=71.9
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..++..+||+|++.+|+.+...|++|.++|||||+.+++|+|+|..++||. || .|.++..|+||+|||||.|
T Consensus 52 g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~----~d----~p~s~~~y~Qr~GRagR~g 123 (300)
T 3i32_A 52 GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YR----MPDRAEAYQHRSGRTGRAG 123 (300)
T ss_dssp TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE----SS----CCSSTTHHHHHHTCCC---
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEE----cC----CCCCHHHHHHHccCcCcCC
Confidence 456889999999999999999999999999999999999999999888887 33 3778999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 124 --~~G~~i~l~~~~ 135 (300)
T 3i32_A 124 --RGGRVVLLYGPR 135 (300)
T ss_dssp ----CEEEEEECSS
T ss_pred --CCceEEEEeChH
Confidence 569999988776
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.38 E-value=1.5e-12 Score=139.92 Aligned_cols=94 Identities=24% Similarity=0.353 Sum_probs=77.7
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCc--cccCHhHHHhhhccCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKF--RWISSGEYIQMSGRAGR 121 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~--~~~~~~e~~qm~GRAGR 121 (650)
..+++++||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||. ||.... ...+..+|+||+|||||
T Consensus 290 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR 365 (412)
T 3fht_A 290 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRTGR 365 (412)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE----SSCCBCSSSSBCHHHHHHHHTTSSC
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE----ECCCCCCCCCcchheeecccCcccC
Confidence 557899999999999999999999999999999999999999999888886 332111 12578999999999999
Q ss_pred CCCCCceEEEEeecCCCcHHHH
Q 006319 122 RGIDERGICILMVDDKMEPSTA 143 (650)
Q Consensus 122 ~g~d~~G~~ii~~~~~~~~~~~ 143 (650)
.| ..|.+++++++..+...+
T Consensus 366 ~g--~~g~~~~~~~~~~~~~~~ 385 (412)
T 3fht_A 366 FG--KRGLAVNMVDSKHSMNIL 385 (412)
T ss_dssp TT--CCEEEEEEECSHHHHHHH
T ss_pred CC--CCceEEEEEcChhhHHHH
Confidence 98 678888888766333333
No 19
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.38 E-value=1.5e-12 Score=142.76 Aligned_cols=84 Identities=26% Similarity=0.328 Sum_probs=75.5
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...+..+||+|++.+|+.++..|++|.++|||||+++++|+|+|..++||. || .|.++.+|+||+|||||.|
T Consensus 324 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d----~p~~~~~y~qriGR~gR~g 395 (434)
T 2db3_A 324 EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----YD----MPSKIDDYVHRIGRTGRVG 395 (434)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SS----CCSSHHHHHHHHTTSSCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE----EC----CCCCHHHHHHHhcccccCC
Confidence 457899999999999999999999999999999999999999999888887 44 3779999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.++++..+.
T Consensus 396 --~~G~a~~~~~~~ 407 (434)
T 2db3_A 396 --NNGRATSFFDPE 407 (434)
T ss_dssp --CCEEEEEEECTT
T ss_pred --CCCEEEEEEecc
Confidence 578888887754
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.37 E-value=1.3e-12 Score=146.84 Aligned_cols=95 Identities=26% Similarity=0.352 Sum_probs=80.7
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...++.|||+|++.+|..++..|++|.++|||||+++++|||+|..++||+ |+ .|.++.+|.||+|||||.|
T Consensus 260 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~----~p~s~~~y~Qr~GRaGR~g 331 (523)
T 1oyw_A 260 GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FD----IPRNIESYYQETGRAGRDG 331 (523)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SS----CCSSHHHHHHHHTTSCTTS
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE----EC----CCCCHHHHHHHhccccCCC
Confidence 456899999999999999999999999999999999999999999887777 33 3779999999999999999
Q ss_pred CCCceEEEEeecCCCcHHHHHHHhcC
Q 006319 124 IDERGICILMVDDKMEPSTAKMMLKG 149 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~~~~~~~~~~ 149 (650)
..|.++++..+. +...++.++..
T Consensus 332 --~~~~~~l~~~~~-d~~~~~~~~~~ 354 (523)
T 1oyw_A 332 --LPAEAMLFYDPA-DMAWLRRCLEE 354 (523)
T ss_dssp --SCEEEEEEECHH-HHHHHHHHHHT
T ss_pred --CCceEEEEeCHH-HHHHHHHHHhc
Confidence 578888887654 44455556543
No 21
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.07 E-value=4.6e-14 Score=134.96 Aligned_cols=84 Identities=24% Similarity=0.359 Sum_probs=74.0
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..+++.+||+|++.+|..+...|++|.++|||||+++++|+|+|+.++||. || .|.++.+|+||+|||||.|
T Consensus 54 ~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~~----~p~~~~~~~qr~GR~~R~g 125 (170)
T 2yjt_D 54 GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN----FD----MPRSGDTYLHRIGRTARAG 125 (170)
Confidence 457889999999999999999999999999999999999999999777776 33 3778999999999999998
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 126 --~~g~~~~~~~~~ 137 (170)
T 2yjt_D 126 --RKGTAISLVEAH 137 (170)
Confidence 577887777655
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.36 E-value=1.4e-12 Score=147.18 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=79.0
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..+++.|||+|++.+|..++..|++|.++|||||+++++|||+|+.++||. || .|.++.+|+||+|||||.|
T Consensus 366 ~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~----~p~s~~~y~Qr~GRagR~g 437 (563)
T 3i5x_A 366 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IG----VPSELANYIHRIGRTARSG 437 (563)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ES----CCSSTTHHHHHHTTSSCTT
T ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE----EC----CCCchhhhhhhcCccccCC
Confidence 456889999999999999999999999999999999999999998766665 33 3778999999999999998
Q ss_pred CCCceEEEEeecCCCcHHHHHHHh
Q 006319 124 IDERGICILMVDDKMEPSTAKMML 147 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~~~~~~~~ 147 (650)
..|.+++++.+. +...+..+.
T Consensus 438 --~~g~~i~~~~~~-e~~~~~~l~ 458 (563)
T 3i5x_A 438 --KEGSSVLFICKD-ELPFVRELE 458 (563)
T ss_dssp --CCEEEEEEEEGG-GHHHHHHHH
T ss_pred --CCceEEEEEchh-HHHHHHHHH
Confidence 578888887765 455565554
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.35 E-value=4.5e-12 Score=134.93 Aligned_cols=89 Identities=26% Similarity=0.457 Sum_probs=74.9
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEe-ccccccCCCccccCHhHHHhhhccCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFT-NVRKFDGDKFRWISSGEYIQMSGRAGRR 122 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~-~~~k~dg~~~~~~~~~e~~qm~GRAGR~ 122 (650)
...+.++||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||. +..++ ...+.++.+|+||+|||||.
T Consensus 267 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~---~~~~~s~~~~~Qr~GR~gR~ 343 (395)
T 3pey_A 267 GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTL---ANGQADPATYIHRIGRTGRF 343 (395)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBC---TTSSBCHHHHHHHHTTSSCT
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCC---CcCCCCHHHhhHhccccccC
Confidence 457899999999999999999999999999999999999999999777775 22111 11235899999999999999
Q ss_pred CCCCceEEEEeecCC
Q 006319 123 GIDERGICILMVDDK 137 (650)
Q Consensus 123 g~d~~G~~ii~~~~~ 137 (650)
| ..|.+++++.+.
T Consensus 344 g--~~g~~~~~~~~~ 356 (395)
T 3pey_A 344 G--RKGVAISFVHDK 356 (395)
T ss_dssp T--CCEEEEEEECSH
T ss_pred C--CCceEEEEEech
Confidence 9 578888888765
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.35 E-value=2.9e-12 Score=137.55 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=79.1
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..++.++||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||. |+ .|.++.+|+||+|||||.|
T Consensus 282 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~----~p~s~~~~~Qr~GR~gR~g 353 (400)
T 1s2m_A 282 GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FD----FPKTAETYLHRIGRSGRFG 353 (400)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SS----CCSSHHHHHHHHCBSSCTT
T ss_pred CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE----eC----CCCCHHHHHHhcchhcCCC
Confidence 457899999999999999999999999999999999999999999888887 33 3678999999999999999
Q ss_pred CCCceEEEEeecCCCcHHHHHHH
Q 006319 124 IDERGICILMVDDKMEPSTAKMM 146 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~~~~~~~ 146 (650)
..|.++++..+. +...+.++
T Consensus 354 --~~g~~~~l~~~~-~~~~~~~i 373 (400)
T 1s2m_A 354 --HLGLAINLINWN-DRFNLYKI 373 (400)
T ss_dssp --CCEEEEEEECGG-GHHHHHHH
T ss_pred --CCceEEEEeccc-hHHHHHHH
Confidence 578888888766 44444433
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.35 E-value=2.2e-12 Score=139.13 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=73.7
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..++..+||+|++.+|..++..|++|.++|||||+++++|+|+|+.++||. || .|.++.+|+||+|||||.|
T Consensus 300 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~----~p~s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 300 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FD----LPSDIEEYVHRIGRTGRVG 371 (417)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE----SS----CCSSHHHHHHHHTTBCC--
T ss_pred CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----Ec----CCCCHHHHHHhcCccccCC
Confidence 457899999999999999999999999999999999999999999888887 33 3778999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.++++..+.
T Consensus 372 --~~g~~~~~~~~~ 383 (417)
T 2i4i_A 372 --NLGLATSFFNER 383 (417)
T ss_dssp --CCEEEEEEECGG
T ss_pred --CCceEEEEEccc
Confidence 568888887765
No 26
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.33 E-value=3e-12 Score=138.00 Aligned_cols=84 Identities=25% Similarity=0.461 Sum_probs=75.6
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||. || .|.++.+|+||+|||||.|
T Consensus 300 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~----~p~s~~~~~Qr~GR~gR~g 371 (410)
T 2j0s_A 300 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YD----LPNNRELYIHRIGRSGRYG 371 (410)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SS----CCSSHHHHHHHHTTSSGGG
T ss_pred CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE----EC----CCCCHHHHHHhcccccCCC
Confidence 457899999999999999999999999999999999999999999888887 43 3678999999999999998
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.++++..+.
T Consensus 372 --~~g~~~~~~~~~ 383 (410)
T 2j0s_A 372 --RKGVAINFVKND 383 (410)
T ss_dssp --CCEEEEEEEEGG
T ss_pred --CceEEEEEecHH
Confidence 678888887765
No 27
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.32 E-value=3.4e-12 Score=145.49 Aligned_cols=94 Identities=27% Similarity=0.324 Sum_probs=81.0
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..+++.+||+|++.+|..+++.|++|.++|||||++++||||+|..++||+ |+ .|.++..|.|++|||||.|
T Consensus 291 g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~----~p~s~~~y~Qr~GRaGR~G 362 (591)
T 2v1x_A 291 GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH----HS----MSKSMENYYQESGRAGRDD 362 (591)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SS----CCSSHHHHHHHHTTSCTTS
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE----eC----CCCCHHHHHHHhccCCcCC
Confidence 457899999999999999999999999999999999999999999888887 33 3779999999999999998
Q ss_pred CCCceEEEEeecCCCcHHHHHHHhc
Q 006319 124 IDERGICILMVDDKMEPSTAKMMLK 148 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~~~~~~~~~ 148 (650)
..|.+++++.+. +...+..++.
T Consensus 363 --~~g~~i~l~~~~-D~~~~~~~~~ 384 (591)
T 2v1x_A 363 --MKADCILYYGFG-DIFRISSMVV 384 (591)
T ss_dssp --SCEEEEEEECHH-HHHHHHHHTT
T ss_pred --CCceEEEEEChH-HHHHHHHHHh
Confidence 578888887654 4455566654
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.31 E-value=6.4e-12 Score=130.96 Aligned_cols=98 Identities=27% Similarity=0.329 Sum_probs=79.0
Q ss_pred HHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhh
Q 006319 36 VSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQM 115 (650)
Q Consensus 36 ~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm 115 (650)
...+.+.+. ++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||. |+ .|.++.+|+||
T Consensus 233 ~~~l~~~l~-~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~----~~~s~~~~~Q~ 303 (337)
T 2z0m_A 233 VAKLVRLFD-NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN----FD----APQDLRTYIHR 303 (337)
T ss_dssp HHHHHTTCT-TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE----SS----CCSSHHHHHHH
T ss_pred HHHHHHHhh-hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE----ec----CCCCHHHhhHh
Confidence 344555454 7899999999999999999999999999999999999999999777776 33 26789999999
Q ss_pred hccCCCCCCCCceEEEEeecCCCcHHHHHHH
Q 006319 116 SGRAGRRGIDERGICILMVDDKMEPSTAKMM 146 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~ 146 (650)
+|||||.| ..|.++++.. . +....+.+
T Consensus 304 ~GR~gR~g--~~g~~~~~~~-~-~~~~~~~i 330 (337)
T 2z0m_A 304 IGRTGRMG--RKGEAITFIL-N-EYWLEKEV 330 (337)
T ss_dssp HTTBCGGG--CCEEEEEEES-S-CHHHHHHH
T ss_pred cCccccCC--CCceEEEEEe-C-cHHHHHHH
Confidence 99999999 4677776666 2 34444443
No 29
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.31 E-value=6.8e-12 Score=132.16 Aligned_cols=84 Identities=25% Similarity=0.425 Sum_probs=74.2
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..+++.+||+|++.+|..++..|++|.++|||||+++++|+|+|+.++||. |+ .|.++.+|.||+|||||.|
T Consensus 262 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~----~~~s~~~~~Q~~GR~~R~g 333 (367)
T 1hv8_A 262 GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YH----LPQNPESYMHRIGRTGRAG 333 (367)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SS----CCSCHHHHHHHSTTTCCSS
T ss_pred CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE----ec----CCCCHHHhhhcccccccCC
Confidence 457899999999999999999999999999999999999999999877776 22 3778999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.++++..+.
T Consensus 334 --~~g~~~~~~~~~ 345 (367)
T 1hv8_A 334 --KKGKAISIINRR 345 (367)
T ss_dssp --SCCEEEEEECTT
T ss_pred --CccEEEEEEcHH
Confidence 567777777665
No 30
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.30 E-value=6.2e-12 Score=134.17 Aligned_cols=93 Identities=23% Similarity=0.308 Sum_probs=77.8
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||. |+ .|.++.+|+||+|||||.|
T Consensus 274 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~----~p~s~~~~~Qr~GR~~R~g 345 (391)
T 1xti_A 274 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YD----MPEDSDTYLHRVARAGRFG 345 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SS----CCSSHHHHHHHHCBCSSSC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE----eC----CCCCHHHHHHhcccccCCC
Confidence 346889999999999999999999999999999999999999998777776 32 3678999999999999999
Q ss_pred CCCceEEEEeecCCCcHHHHHHH
Q 006319 124 IDERGICILMVDDKMEPSTAKMM 146 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~~~~~~~ 146 (650)
..|.+++++.+..+...+..+
T Consensus 346 --~~g~~~~~~~~~~~~~~~~~~ 366 (391)
T 1xti_A 346 --TKGLAITFVSDENDAKILNDV 366 (391)
T ss_dssp --CCCEEEEEECSHHHHHHHHHH
T ss_pred --CceEEEEEEcccchHHHHHHH
Confidence 678888888766333333333
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=5.6e-12 Score=143.12 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=79.4
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
...+..+||+|++.+|..++..|++|.++|||||+++++|||+|..++||. |+ .|.++..|+||+|||||.|
T Consensus 315 ~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~----~p~s~~~y~Qr~GRagR~g 386 (579)
T 3sqw_A 315 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IG----VPSELANYIHRIGRTARSG 386 (579)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ES----CCSSTTHHHHHHTTSSCTT
T ss_pred CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE----cC----CCCCHHHhhhhccccccCC
Confidence 456889999999999999999999999999999999999999998776666 33 3778999999999999999
Q ss_pred CCCceEEEEeecCCCcHHHHHHHhc
Q 006319 124 IDERGICILMVDDKMEPSTAKMMLK 148 (650)
Q Consensus 124 ~d~~G~~ii~~~~~~~~~~~~~~~~ 148 (650)
..|.+++++.+. +...+..+..
T Consensus 387 --~~g~~i~~~~~~-e~~~~~~l~~ 408 (579)
T 3sqw_A 387 --KEGSSVLFICKD-ELPFVRELED 408 (579)
T ss_dssp --CCEEEEEEEEGG-GHHHHHHHHH
T ss_pred --CCceEEEEEccc-HHHHHHHHHH
Confidence 578888887765 4555555543
No 32
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.28 E-value=2.4e-12 Score=138.53 Aligned_cols=84 Identities=25% Similarity=0.448 Sum_probs=61.1
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..+++.+||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||. |+ .|.++.+|+||+|||||.|
T Consensus 304 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~----~p~s~~~~~Qr~GR~gR~g 375 (414)
T 3eiq_A 304 DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD----LPTNRENYIHRIGRGGRFG 375 (414)
T ss_dssp TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE----SS----CCSSTHHHHHHSCCC----
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE----eC----CCCCHHHhhhhcCcccCCC
Confidence 457899999999999999999999999999999999999999999887776 33 3678999999999999999
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 376 --~~g~~~~~~~~~ 387 (414)
T 3eiq_A 376 --RKGVAINMVTEE 387 (414)
T ss_dssp -----CEEEEECST
T ss_pred --CCceEEEEEcHH
Confidence 568888887766
No 33
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.25 E-value=5.2e-13 Score=147.71 Aligned_cols=94 Identities=24% Similarity=0.347 Sum_probs=0.0
Q ss_pred hccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCC--ccccCHhHHHhhhccCC
Q 006319 43 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDK--FRWISSGEYIQMSGRAG 120 (650)
Q Consensus 43 l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~--~~~~~~~e~~qm~GRAG 120 (650)
...++++|||+|++.+|..++..|++|.++|||||+++++|+|+|+.++||. ||... ....+..+|+||+||||
T Consensus 356 ~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~----~d~p~~~~~~~s~~~~~Qr~GRag 431 (479)
T 3fmp_B 356 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRTG 431 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE----ecCCCCCccCCCHHHHHHHhcccc
Confidence 3567899999999999999999999999999999999999999999888886 33211 01246789999999999
Q ss_pred CCCCCCceEEEEeecCCCcHHH
Q 006319 121 RRGIDERGICILMVDDKMEPST 142 (650)
Q Consensus 121 R~g~d~~G~~ii~~~~~~~~~~ 142 (650)
|.| ..|.+++++++..+...
T Consensus 432 R~g--~~G~~i~~~~~~~~~~~ 451 (479)
T 3fmp_B 432 RFG--KRGLAVNMVDSKHSMNI 451 (479)
T ss_dssp ----------------------
T ss_pred cCC--CCceEEEEEcCcchHHH
Confidence 998 67888888876633333
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.19 E-value=1e-11 Score=139.01 Aligned_cols=113 Identities=19% Similarity=0.275 Sum_probs=67.9
Q ss_pred hHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCc--cccCHhHH
Q 006319 35 QVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKF--RWISSGEY 112 (650)
Q Consensus 35 ~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~--~~~~~~e~ 112 (650)
.+.........++++|||+|++.+|+.+++.|++|.++|||||+++++|+|+|+.++||. ||.... ...++.+|
T Consensus 372 ~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~----~~~p~~~~~~~s~~~~ 447 (508)
T 3fho_A 372 EIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN----YDMPLDQAGRPDPQTY 447 (508)
T ss_dssp HHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--------CC-----CTHHH
T ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE----ECCCCcccCCCCHHHH
Confidence 333333334567899999999999999999999999999999999999999999777775 222110 11678999
Q ss_pred HhhhccCCCCCCCCceEEEEeecCCC---cHHHHHHHhcCCCCc
Q 006319 113 IQMSGRAGRRGIDERGICILMVDDKM---EPSTAKMMLKGSADS 153 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~~~~~~---~~~~~~~~~~~~~~p 153 (650)
+||+|||||.| ..|.+++++.+.. ....+.+++.....+
T Consensus 448 ~Qr~GRagR~g--~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~ 489 (508)
T 3fho_A 448 LHRIGRTGRFG--RVGVSINFVHDKKSWEEMNAIQEYFQRPITR 489 (508)
T ss_dssp HHTTSCCC-------CEEEEEECTTTSSSSHHHHHHHSCCCCC-
T ss_pred HHHhhhcCCCC--CCcEEEEEEeChHHHHHHHHHHHHHCCCccc
Confidence 99999999999 5677777776542 244555555444333
No 35
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.13 E-value=4.9e-12 Score=134.99 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=0.0
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
.++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||. |+ .|.++.+|+||+|||||.|
T Consensus 284 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~----~p~s~~~~~Qr~GR~~R~g- 354 (394)
T 1fuu_A 284 FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YD----LPANKENYIHRIGRGGRFG- 354 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE----eC----CCCCHHHHHHHcCcccCCC-
Confidence 46889999999999999999999999999999999999999999887776 33 3678999999999999998
Q ss_pred CCceEEEEeecCC
Q 006319 125 DERGICILMVDDK 137 (650)
Q Consensus 125 d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 355 -~~g~~~~~~~~~ 366 (394)
T 1fuu_A 355 -RKGVAINFVTNE 366 (394)
T ss_dssp -------------
T ss_pred -CCceEEEEEchh
Confidence 567888777665
No 36
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.08 E-value=7e-11 Score=138.57 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=76.8
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHH-----cCCCcEEEechhhhcccCCCCceEEEec----cccccCCCc------cccCH
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQ-----EGLIKCLFATETFSIGLNMPAKTVVFTN----VRKFDGDKF------RWISS 109 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~-----~g~i~vLvaT~tla~Gin~pa~~VVi~~----~~k~dg~~~------~~~~~ 109 (650)
..|..|||+|++.+|..++..|. +|.++|||||+++++|||+|+.++||.. .+.||+... .|.+.
T Consensus 339 ~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~ 418 (773)
T 2xau_A 339 LSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK 418 (773)
T ss_dssp EEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCH
T ss_pred eEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCH
Confidence 35889999999999999999999 9999999999999999999998888873 235776422 27899
Q ss_pred hHHHhhhccCCCCCCCCceEEEEeecC
Q 006319 110 GEYIQMSGRAGRRGIDERGICILMVDD 136 (650)
Q Consensus 110 ~e~~qm~GRAGR~g~d~~G~~ii~~~~ 136 (650)
.+|.||+|||||. ..|.|+.++.+
T Consensus 419 ~s~~QR~GRaGR~---~~G~~~~l~~~ 442 (773)
T 2xau_A 419 ASAQQRAGRAGRT---RPGKCFRLYTE 442 (773)
T ss_dssp HHHHHHHHGGGSS---SSEEEEESSCH
T ss_pred HHHHhhccccCCC---CCCEEEEEecH
Confidence 9999999999999 48999998754
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.06 E-value=3.3e-10 Score=122.92 Aligned_cols=84 Identities=25% Similarity=0.260 Sum_probs=69.9
Q ss_pred ccCEEEEcC--------CCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhh
Q 006319 44 KRGIGVHHS--------GLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQM 115 (650)
Q Consensus 44 ~~GIg~hH~--------gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm 115 (650)
...+..+|| +|++.+|..+...|++|.++|||||+++++|+|+|+.++||. || .|.++..|.||
T Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~----~d----~~~~~~~~~Qr 456 (494)
T 1wp9_A 385 GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF----YE----PVPSAIRSIQR 456 (494)
T ss_dssp TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE----SS----CCHHHHHHHHH
T ss_pred CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE----eC----CCCCHHHHHHH
Confidence 346789999 999999999999999999999999999999999998777775 33 25688999999
Q ss_pred hccCCCCCCCCceEEEEeecCCC
Q 006319 116 SGRAGRRGIDERGICILMVDDKM 138 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~~~~ 138 (650)
+|||||.|. |.++.+.....
T Consensus 457 ~GR~~R~g~---g~~~~l~~~~t 476 (494)
T 1wp9_A 457 RGRTGRHMP---GRVIILMAKGT 476 (494)
T ss_dssp HTTSCSCCC---SEEEEEEETTS
T ss_pred HhhccCCCC---ceEEEEEecCC
Confidence 999999993 88888777663
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.05 E-value=7.5e-11 Score=138.01 Aligned_cols=83 Identities=27% Similarity=0.479 Sum_probs=71.8
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
.+|+.+||+|++.+|+.++..|++|.++|||||+++++|||+|..++||. ||. ...+...|.||+|||||.|
T Consensus 614 ~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~---~r~~l~~l~Qr~GRaGR~g- 685 (780)
T 1gm5_A 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENP---ERFGLAQLHQLRGRVGRGG- 685 (780)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSC---SSSCTTHHHHHHHTSCCSS-
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE----eCC---CCCCHHHHHHHhcccCcCC-
Confidence 36899999999999999999999999999999999999999998777765 222 1246789999999999998
Q ss_pred CCceEEEEeecC
Q 006319 125 DERGICILMVDD 136 (650)
Q Consensus 125 d~~G~~ii~~~~ 136 (650)
..|.|++++.+
T Consensus 686 -~~g~~ill~~~ 696 (780)
T 1gm5_A 686 -QEAYCFLVVGD 696 (780)
T ss_dssp -TTCEEECCCCS
T ss_pred -CCCEEEEEECC
Confidence 67999998873
No 39
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.05 E-value=1.9e-10 Score=124.48 Aligned_cols=79 Identities=24% Similarity=0.308 Sum_probs=65.1
Q ss_pred ccCEE-EEcCCCCHHHHHHHHHHHHcCCCcEEEe----chhhhcccCCCC-ceEEEeccccccCCCccc--cCHhHHHhh
Q 006319 44 KRGIG-VHHSGLLPILKEVIEILFQEGLIKCLFA----TETFSIGLNMPA-KTVVFTNVRKFDGDKFRW--ISSGEYIQM 115 (650)
Q Consensus 44 ~~GIg-~hH~gl~~~~R~~ve~lF~~g~i~vLva----T~tla~Gin~pa-~~VVi~~~~k~dg~~~~~--~~~~e~~qm 115 (650)
...++ .+||. .|+ +..|++|.++|||| |+++++|+|+|+ .++||. || .| .++.+|+||
T Consensus 276 ~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~----~~----~p~~~~~~~y~qr 341 (414)
T 3oiy_A 276 KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WG----TPSGPDVYTYIQA 341 (414)
T ss_dssp TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE----ES----CCTTTCHHHHHHH
T ss_pred CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE----EC----CCCCCCHHHHHHH
Confidence 34566 77884 444 99999999999999 999999999998 565554 33 26 789999999
Q ss_pred hccCCCCCCC--CceEEEEeecC
Q 006319 116 SGRAGRRGID--ERGICILMVDD 136 (650)
Q Consensus 116 ~GRAGR~g~d--~~G~~ii~~~~ 136 (650)
+|||||.|.+ ..|.+++++++
T Consensus 342 ~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 342 SGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp HGGGCCEETTEECCEEEEEECCC
T ss_pred hCccccCCCCCCcceEEEEEEcc
Confidence 9999999977 58999999843
No 40
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.04 E-value=1.1e-10 Score=128.44 Aligned_cols=86 Identities=19% Similarity=0.107 Sum_probs=60.1
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecccc-----ccCC-----CccccCHhHHH
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRK-----FDGD-----KFRWISSGEYI 113 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k-----~dg~-----~~~~~~~~e~~ 113 (650)
...++.+|| .+|+.++..|++|.++|||||+++++|||+|+..||..++.+ +++. ...|.+..+|+
T Consensus 201 ~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~ 276 (440)
T 1yks_A 201 GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAA 276 (440)
T ss_dssp TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccCceEEEeCCccceeeecccccceeeccccccCHHHHH
Confidence 446899999 468999999999999999999999999999955555444332 1221 23478999999
Q ss_pred hhhccCCCCCCCCceEEEEee
Q 006319 114 QMSGRAGRRGIDERGICILMV 134 (650)
Q Consensus 114 qm~GRAGR~g~d~~G~~ii~~ 134 (650)
||+|||||.|. ..|.+++++
T Consensus 277 Qr~GR~GR~g~-~~g~~~~l~ 296 (440)
T 1yks_A 277 QRRGRIGRNPN-RDGDSYYYS 296 (440)
T ss_dssp HHHTTSSCCTT-CCCEEEEEC
T ss_pred HhccccCCCCC-CCceEEEEe
Confidence 99999999841 578888885
No 41
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.04 E-value=5.4e-10 Score=129.00 Aligned_cols=86 Identities=24% Similarity=0.266 Sum_probs=73.5
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCce-EEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKT-VVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~-VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
..+.++||+|++.+|..+...|++|.++|||||+.+++|+|+|..+ ||+.+..++ .-|.+...|+||+|||||.|
T Consensus 464 i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~----G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 464 IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKE----GFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSC----SGGGSHHHHHHHHGGGTTST
T ss_pred CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCccc----CCCCCHHHHHHHHCccCcCC
Confidence 4578899999999999999999999999999999999999999955 555554333 12678999999999999985
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
.|.+++++++.
T Consensus 540 ---~G~~i~~~~~~ 550 (664)
T 1c4o_A 540 ---RGEVWLYADRV 550 (664)
T ss_dssp ---TCEEEEECSSC
T ss_pred ---CCEEEEEEcCC
Confidence 79999988765
No 42
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.97 E-value=6e-10 Score=122.10 Aligned_cols=87 Identities=15% Similarity=-0.007 Sum_probs=67.3
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccc---c-----CCCccccCHhHHHhh
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKF---D-----GDKFRWISSGEYIQM 115 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~---d-----g~~~~~~~~~e~~qm 115 (650)
...++.+||+ +|+.++..|++|.++|||||+++++|||+|..+||..+..+. | -....|.+..+|+||
T Consensus 195 ~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr 270 (431)
T 2v6i_A 195 GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQR 270 (431)
T ss_dssp TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHH
T ss_pred CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHh
Confidence 4568999997 688899999999999999999999999999877765443321 0 011247799999999
Q ss_pred hccCCCCCCCCceEEEEeec
Q 006319 116 SGRAGRRGIDERGICILMVD 135 (650)
Q Consensus 116 ~GRAGR~g~d~~G~~ii~~~ 135 (650)
+|||||.|.. .|.++++..
T Consensus 271 ~GR~GR~g~~-~~~~~~~~~ 289 (431)
T 2v6i_A 271 RGRIGRNPEK-LGDIYAYSG 289 (431)
T ss_dssp HTTSSCCTTC-CCCEEEECS
T ss_pred hhccCCCCCC-CCeEEEEcC
Confidence 9999999843 455666553
No 43
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.97 E-value=3.7e-10 Score=124.44 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=75.8
Q ss_pred HhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhh
Q 006319 37 SNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMS 116 (650)
Q Consensus 37 ~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~ 116 (650)
..+.+.+ ++.++||++++.+|+.+...|++|.++|||||++++.|+|+|+.++||. ||+ +.++..|.|++
T Consensus 363 ~~l~~~l--~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~----~~~----~~s~~~~~Q~~ 432 (472)
T 2fwr_A 363 YRISKVF--LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----MSG----SGSAREYIQRL 432 (472)
T ss_dssp HHHHHHT--TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE----ECC----SSCCHHHHHHH
T ss_pred HHHHHHh--CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE----ECC----CCCHHHHHHHH
Confidence 3444444 5888999999999999999999999999999999999999999777776 332 56899999999
Q ss_pred ccCCCCCCC-CceEEEEeecCC
Q 006319 117 GRAGRRGID-ERGICILMVDDK 137 (650)
Q Consensus 117 GRAGR~g~d-~~G~~ii~~~~~ 137 (650)
|||||.|.. ..+.++.++...
T Consensus 433 GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 433 GRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHSBCCCTTTCCEEEEEEEECS
T ss_pred hhccCCCCCCceEEEEEEEeCC
Confidence 999999965 466666666654
No 44
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.97 E-value=1.3e-09 Score=132.85 Aligned_cols=84 Identities=17% Similarity=0.287 Sum_probs=73.0
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEE-eccccccCCCccccCHhHHHhhhccCCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVF-TNVRKFDGDKFRWISSGEYIQMSGRAGRR 122 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi-~~~~k~dg~~~~~~~~~e~~qm~GRAGR~ 122 (650)
..+|+++||+|++.+|+.++..|++|.++|||||+++++|+|+|..++|| .+. .+.++.+|.||+||+||.
T Consensus 838 ~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~--------~~~~l~~l~Qr~GRvgR~ 909 (1151)
T 2eyq_A 838 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA--------DHFGLAQLHQLRGRVGRS 909 (1151)
T ss_dssp TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTT--------TSSCHHHHHHHHTTCCBT
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCC--------CCCCHHHHHHHHhccCcC
Confidence 45799999999999999999999999999999999999999999866555 422 135788999999999999
Q ss_pred CCCCceEEEEeecCC
Q 006319 123 GIDERGICILMVDDK 137 (650)
Q Consensus 123 g~d~~G~~ii~~~~~ 137 (650)
| ..|.|++++.+.
T Consensus 910 g--~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 910 H--HQAYAWLLTPHP 922 (1151)
T ss_dssp T--BCEEEEEEECCG
T ss_pred C--CceEEEEEECCc
Confidence 8 689999887654
No 45
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.97 E-value=2.8e-10 Score=127.15 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=30.5
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHc-CCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQE-GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~-g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
.+...+||||++.+|..+...|++ |.++|||||+++++|||+|+.++||. ||. |.++..|+||+|| ||.
T Consensus 427 ~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~----p~s~~~~~Qr~GR-gR~- 496 (556)
T 4a2p_A 427 RGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY----SGNVTKMIQVRGR-GRA- 496 (556)
T ss_dssp ---------------------------CCEEEEEC-----------CEEEE----ETC----CSCHHHHHHC--------
T ss_pred cCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE----eCC----CCCHHHHHHhcCC-CCC-
Confidence 345678999999999999999999 99999999999999999999888877 553 7899999999999 988
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.+++++...
T Consensus 497 --~~g~~~~l~~~~ 508 (556)
T 4a2p_A 497 --AGSKCILVTSKT 508 (556)
T ss_dssp ----CCEEEEESCH
T ss_pred --CCceEEEEEeCc
Confidence 478888887765
No 46
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.96 E-value=3.9e-10 Score=130.31 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=60.0
Q ss_pred cCEEEEcCC--------CCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhh
Q 006319 45 RGIGVHHSG--------LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMS 116 (650)
Q Consensus 45 ~GIg~hH~g--------l~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~ 116 (650)
..+..+||+ |++.+|..+...|++|.++|||||+++++|||+|+.++||. || .|.++..|.||+
T Consensus 431 ~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d----~p~s~~~~~Qr~ 502 (699)
T 4gl2_A 431 VKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR----YG----LVTNEIAMVQAR 502 (699)
T ss_dssp --CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE----ES----CCCCHHHHHHHH
T ss_pred cceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE----eC----CCCCHHHHHHHc
Confidence 346789999 99999999999999999999999999999999999888776 54 377999999999
Q ss_pred ccCCCCC
Q 006319 117 GRAGRRG 123 (650)
Q Consensus 117 GRAGR~g 123 (650)
|||||.|
T Consensus 503 GRArr~g 509 (699)
T 4gl2_A 503 GRARADE 509 (699)
T ss_dssp TTSCSSS
T ss_pred CCCCCCC
Confidence 9988776
No 47
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.95 E-value=1.8e-09 Score=124.61 Aligned_cols=94 Identities=23% Similarity=0.274 Sum_probs=76.6
Q ss_pred HhHHHHhc---cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCce-EEEeccccccCCCccccCHhHH
Q 006319 37 SNILPLLK---RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKT-VVFTNVRKFDGDKFRWISSGEY 112 (650)
Q Consensus 37 ~~l~~~l~---~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~-VVi~~~~k~dg~~~~~~~~~e~ 112 (650)
..+.+.|. ..+.++||+|++.+|..+...|++|.++|||||+.+++|+|+|..+ ||+.+..+|. -|.+...|
T Consensus 459 e~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G----~p~s~~~~ 534 (661)
T 2d7d_A 459 EDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEG----FLRSERSL 534 (661)
T ss_dssp HHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCT----TTTSHHHH
T ss_pred HHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCccccc----CCCCHHHH
Confidence 44444443 3578899999999999999999999999999999999999999955 5555543332 26688999
Q ss_pred HhhhccCCCCCCCCceEEEEeecCC
Q 006319 113 IQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+||+|||||. ..|.+++++++.
T Consensus 535 iQr~GRagR~---~~G~~i~~~~~~ 556 (661)
T 2d7d_A 535 IQTIGRAARN---AEGRVIMYADKI 556 (661)
T ss_dssp HHHHHTTTTS---TTCEEEEECSSC
T ss_pred HHHhCcccCC---CCCEEEEEEeCC
Confidence 9999999998 479999988775
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.94 E-value=9.7e-10 Score=122.31 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=70.7
Q ss_pred hHHhHHHHhcc---CEEEEcCCCCHHHHHHHHHHHHcCCCcEEEec-hhhhcccCCCCceEEEeccccccCCCccccCHh
Q 006319 35 QVSNILPLLKR---GIGVHHSGLLPILKEVIEILFQEGLIKCLFAT-ETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSG 110 (650)
Q Consensus 35 ~~~~l~~~l~~---GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT-~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~ 110 (650)
....+.+.|.. .++++||+|++.+|+.++..|++|.++||||| +++++|+|+|..++||. |+ .+.++.
T Consensus 359 ~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~----~~----~~~s~~ 430 (510)
T 2oca_A 359 HGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL----AH----GVKSKI 430 (510)
T ss_dssp HHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE----SS----CCCSCC
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE----eC----CCCCHH
Confidence 34445555544 78999999999999999999999999999999 99999999999777776 22 256889
Q ss_pred HHHhhhccCCCCCCC
Q 006319 111 EYIQMSGRAGRRGID 125 (650)
Q Consensus 111 e~~qm~GRAGR~g~d 125 (650)
+|.|++|||||.|.+
T Consensus 431 ~~~Q~~GR~gR~g~~ 445 (510)
T 2oca_A 431 IVLQTIGRVLRKHGS 445 (510)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHhcccccCCC
Confidence 999999999999954
No 49
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.93 E-value=2.2e-10 Score=127.71 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=48.9
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHc-CCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQE-GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~-g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
.|...+||+|++.+|..+...|++ |.++|||||+++++|||+|+.++||. ||. |.++..|+||+|| ||.
T Consensus 426 ~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~----~d~----p~s~~~~~Qr~GR-gR~- 495 (555)
T 3tbk_A 426 RGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL----YEY----VGNVIKMIQTRGR-GRA- 495 (555)
T ss_dssp --------------------------CCSEEEECCCTTCCEETTSCSEEEE----ESC----CSSCCCEECSSCC-CTT-
T ss_pred cCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE----eCC----CCCHHHHHHhcCc-CcC-
Confidence 356678899999999999999999 99999999999999999999888877 553 7789999999999 887
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 496 --~~g~~~~l~~~~ 507 (555)
T 3tbk_A 496 --RDSKCFLLTSSA 507 (555)
T ss_dssp --TSCEEEEEESCH
T ss_pred --CCceEEEEEcCC
Confidence 478888887765
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.91 E-value=4.4e-10 Score=124.16 Aligned_cols=89 Identities=17% Similarity=0.075 Sum_probs=64.6
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccc-----cccCCC------ccccCHhHH
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVR-----KFDGDK------FRWISSGEY 112 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~-----k~dg~~------~~~~~~~e~ 112 (650)
...+...||. +|+.++..|++|.++|||||+++++|||+|+..||..|.. .|++.. ..|.+..+|
T Consensus 214 g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~ 289 (459)
T 2z83_A 214 GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASA 289 (459)
T ss_dssp TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSCSEEEECCEECCEEEECSSSCEEEECSCEECCHHHH
T ss_pred CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCCCEEEECCcccccccccccccccccccCCCCCHHHH
Confidence 4467788884 7888999999999999999999999999999555543321 123321 257899999
Q ss_pred HhhhccCCCCCCCCceEEEEeecCC
Q 006319 113 IQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+||+|||||.|. ..|.+++++...
T Consensus 290 ~QR~GRaGR~g~-~~G~~~~~~~~~ 313 (459)
T 2z83_A 290 AQRRGRVGRNPN-QVGDEYHYGGAT 313 (459)
T ss_dssp HHHHTTSSCCTT-CCCEEEEECSCC
T ss_pred HHhccccCCCCC-CCCeEEEEEccc
Confidence 999999999984 267777776553
No 51
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.91 E-value=2.5e-09 Score=123.41 Aligned_cols=86 Identities=17% Similarity=0.092 Sum_probs=68.0
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecccc-----ccCC------CccccCHhHH
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRK-----FDGD------KFRWISSGEY 112 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k-----~dg~------~~~~~~~~e~ 112 (650)
...++.+||. +|+.++..|++|.++|||||+++++|||+|...||..+..+ ||.. ...|.++.+|
T Consensus 434 g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDipv~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y 509 (673)
T 2wv9_A 434 GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASA 509 (673)
T ss_dssp TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCCCSEEEECCEECCEEEECSTTCEEEECCSEECCHHHH
T ss_pred CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeCCcEEEECCCcccceeeecccccceecccCCCCHHHH
Confidence 3468899994 89999999999999999999999999999966666544221 2322 2357899999
Q ss_pred HhhhccCCCCCCCCceEEEEee
Q 006319 113 IQMSGRAGRRGIDERGICILMV 134 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~~ 134 (650)
+||+|||||.| ...|.++++.
T Consensus 510 ~Qr~GRaGR~~-g~~G~ai~l~ 530 (673)
T 2wv9_A 510 AQRRGRVGRNP-SQIGDEYHYG 530 (673)
T ss_dssp HHHHTTSSCCS-SCCCEEEEEC
T ss_pred HHHhhccCCCC-CCCCEEEEEE
Confidence 99999999993 1578888885
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.90 E-value=1.9e-09 Score=118.79 Aligned_cols=86 Identities=15% Similarity=0.050 Sum_probs=64.5
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEe-cc---cc--ccCCC------ccccCHhHH
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFT-NV---RK--FDGDK------FRWISSGEY 112 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~-~~---~k--~dg~~------~~~~~~~e~ 112 (650)
..+...||.+ ++.+...|++|.++|||||+++++|||+|+ .+||. +. .. |++.. ..|.+..+|
T Consensus 213 ~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y 287 (451)
T 2jlq_A 213 KRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASA 287 (451)
T ss_dssp CCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHH
T ss_pred CeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHH
Confidence 3567778765 467888999999999999999999999999 55553 21 11 22221 167899999
Q ss_pred HhhhccCCCCCCCCceEEEEeecC
Q 006319 113 IQMSGRAGRRGIDERGICILMVDD 136 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~~~~ 136 (650)
+||+|||||.|.+ .|.+++++..
T Consensus 288 ~Qr~GRaGR~g~~-~g~~~~~~~~ 310 (451)
T 2jlq_A 288 AQRRGRIGRNPAQ-EDDQYVFSGD 310 (451)
T ss_dssp HHHHTTSSCCTTC-CCEEEEECSC
T ss_pred HHhccccCCCCCC-CccEEEEeCC
Confidence 9999999999953 5667777643
No 53
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.89 E-value=1.9e-09 Score=123.48 Aligned_cols=87 Identities=11% Similarity=-0.031 Sum_probs=69.2
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccc----cCC-------CccccCHhHH
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKF----DGD-------KFRWISSGEY 112 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~----dg~-------~~~~~~~~e~ 112 (650)
...+..+||. +|+.+...|++|.++|||||+++++|||+|...||..+..+. ++. ...|.+..+|
T Consensus 379 g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~y 454 (618)
T 2whx_A 379 GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASA 454 (618)
T ss_dssp TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHH
T ss_pred CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHH
Confidence 3467888984 788899999999999999999999999999888877665322 111 1247899999
Q ss_pred HhhhccCCCCCCCCceEEEEeec
Q 006319 113 IQMSGRAGRRGIDERGICILMVD 135 (650)
Q Consensus 113 ~qm~GRAGR~g~d~~G~~ii~~~ 135 (650)
+||+|||||.|. ..|.++++..
T Consensus 455 iQR~GRaGR~g~-~~G~ai~l~~ 476 (618)
T 2whx_A 455 AQRRGRIGRNPA-QEDDQYVFSG 476 (618)
T ss_dssp HHHHTTSSCCTT-CCCEEEEECS
T ss_pred HHhccccCCCCC-CCCeEEEEcc
Confidence 999999999973 3678888775
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.87 E-value=4.6e-09 Score=126.16 Aligned_cols=104 Identities=20% Similarity=0.139 Sum_probs=81.9
Q ss_pred HHhHHHHhc----cCEEEEcCCCCHHHHHHHHHHHHcCC--CcEEEechhhhcccCCCCceEEEeccccccCCCccccCH
Q 006319 36 VSNILPLLK----RGIGVHHSGLLPILKEVIEILFQEGL--IKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISS 109 (650)
Q Consensus 36 ~~~l~~~l~----~GIg~hH~gl~~~~R~~ve~lF~~g~--i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~ 109 (650)
...+.+.|. ..++.+||+|++..|+.+...|++|. ++|||||+++++|+|+|..++||. || .|.++
T Consensus 516 ~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~----~d----~p~~~ 587 (968)
T 3dmq_A 516 ALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM----FD----LPFNP 587 (968)
T ss_dssp HHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC----SS----CCSSH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE----ec----CCCCH
Confidence 344445454 35789999999999999999999998 999999999999999998777766 33 36799
Q ss_pred hHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHh
Q 006319 110 GEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMML 147 (650)
Q Consensus 110 ~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~ 147 (650)
..|.|++||+||.|......++.+.......+.+.+.+
T Consensus 588 ~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 588 DLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999999999999766556665555554445455555
No 55
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.81 E-value=1.4e-09 Score=128.00 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=36.0
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHc-CCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQE-GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~-g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
.|...+||||++.+|..+...|++ |.++|||||+++++|||+|+.++||. ||. |.++..|+||+|| ||.
T Consensus 668 ~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~----yd~----p~s~~~~iQr~GR-GR~- 737 (797)
T 4a2q_A 668 RGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY----SGNVTKMIQVRGR-GRA- 737 (797)
T ss_dssp --------------------------CCSEEEEECC-------CCCSEEEE----ESC----CSCHHHHHTC--------
T ss_pred cCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE----eCC----CCCHHHHHHhcCC-CCC-
Confidence 355678999999999999999999 99999999999999999999888887 543 7899999999999 988
Q ss_pred CCCceEEEEeecCC
Q 006319 124 IDERGICILMVDDK 137 (650)
Q Consensus 124 ~d~~G~~ii~~~~~ 137 (650)
..|.+++++.+.
T Consensus 738 --~~g~~i~l~~~~ 749 (797)
T 4a2q_A 738 --AGSKCILVTSKT 749 (797)
T ss_dssp ---CCCEEEEECCH
T ss_pred --CCceEEEEEeCC
Confidence 478888887665
No 56
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.80 E-value=7.3e-10 Score=127.98 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=35.5
Q ss_pred cCCCCHHHHHHHHHHHHc-CCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceE
Q 006319 51 HSGLLPILKEVIEILFQE-GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGI 129 (650)
Q Consensus 51 H~gl~~~~R~~ve~lF~~-g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~ 129 (650)
||+|++.+|..+.+.|++ |.++|||||+++++|||+|+.++||. ||. |.++..|+||+|| ||. ..|.
T Consensus 441 h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~----~d~----p~s~~~~~Qr~GR-GR~---~~g~ 508 (696)
T 2ykg_A 441 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL----YEY----VGNVIKMIQTRGR-GRA---RGSK 508 (696)
T ss_dssp --------------------CCSCSEEEESSCCC---CCCSEEEE----ESC----C--CCCC-------------CCCE
T ss_pred ccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE----eCC----CCCHHHHHHhhcc-CcC---CCce
Confidence 789999999999999998 99999999999999999999888887 553 6788999999999 997 4788
Q ss_pred EEEeecCC
Q 006319 130 CILMVDDK 137 (650)
Q Consensus 130 ~ii~~~~~ 137 (650)
+++++...
T Consensus 509 ~~~l~~~~ 516 (696)
T 2ykg_A 509 CFLLTSNA 516 (696)
T ss_dssp EEEEESCH
T ss_pred EEEEecCC
Confidence 88887654
No 57
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.77 E-value=1.2e-08 Score=105.12 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=59.0
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcC-CCc-EEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEG-LIK-CLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGR 121 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g-~i~-vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR 121 (650)
...+..+||++++.+|..+...|++| .++ +|++|...+.|+|+++.+.||. ||. |.++..|.|++||++|
T Consensus 137 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~----~d~----~wnp~~~~Q~~gR~~R 208 (271)
T 1z5z_A 137 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR----WWNPAVEDQATDRVYR 208 (271)
T ss_dssp CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE----CSC----CSCTTTC---------
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE----ECC----CCChhHHHHHHHhccc
Confidence 34567899999999999999999999 788 7999999999999999777776 443 7789999999999999
Q ss_pred CCCCCceEEEEeecCC
Q 006319 122 RGIDERGICILMVDDK 137 (650)
Q Consensus 122 ~g~d~~G~~ii~~~~~ 137 (650)
.|......++-+....
T Consensus 209 ~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 209 IGQTRNVIVHKLISVG 224 (271)
T ss_dssp -----CCEEEEEEETT
T ss_pred cCCCCceEEEEEeeCC
Confidence 9977666666555544
No 58
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.74 E-value=9e-09 Score=117.92 Aligned_cols=83 Identities=22% Similarity=0.105 Sum_probs=62.5
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEecccc-------ccCCC-----ccccCHhH
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRK-------FDGDK-----FRWISSGE 111 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k-------~dg~~-----~~~~~~~e 111 (650)
...+..+||+|++.+ |.++..+|||||+.+++|||+|.+.||..+..+ ||+.. ..|.+..+
T Consensus 420 g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~s 492 (666)
T 3o8b_A 420 GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVS 492 (666)
T ss_dssp TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHH
T ss_pred CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCCCcEEEecCcccccccccccccccccccccCcCCHHH
Confidence 346889999999875 456767999999999999999966666544222 33321 15788999
Q ss_pred HHhhhccCCCCCCCCceEEEEeecCC
Q 006319 112 YIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 112 ~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
|+||+||||| | ..|. +.+..+.
T Consensus 493 yiQRiGRtGR-g--~~G~-i~lvt~~ 514 (666)
T 3o8b_A 493 RSQRRGRTGR-G--RRGI-YRFVTPG 514 (666)
T ss_dssp HHHHHTTBCS-S--SCEE-EEESCCC
T ss_pred HHHHhccCCC-C--CCCE-EEEEecc
Confidence 9999999999 6 5677 5555543
No 59
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.71 E-value=4e-09 Score=126.34 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=36.5
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHc-CCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCC
Q 006319 46 GIGVHHSGLLPILKEVIEILFQE-GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGI 124 (650)
Q Consensus 46 GIg~hH~gl~~~~R~~ve~lF~~-g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~ 124 (650)
+...+||+|++.+|..+...|++ |.++|||||+.+++|||+|+.++||. ||. |-++..|+||+|| ||.
T Consensus 669 ~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----yD~----p~s~~~~iQr~GR-GR~-- 737 (936)
T 4a2w_A 669 GRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY----SGNVTKMIQVRGR-GRA-- 737 (936)
T ss_dssp -------------------------CCSEEEEECC------CCCCSEEEE----ESC----CSCSHHHHCC---------
T ss_pred CCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE----eCC----CCCHHHHHHhcCC-CCC--
Confidence 45677999999999999999999 99999999999999999999888877 543 7789999999999 988
Q ss_pred CCceEEEEeecCC
Q 006319 125 DERGICILMVDDK 137 (650)
Q Consensus 125 d~~G~~ii~~~~~ 137 (650)
..|.+++++...
T Consensus 738 -~~g~vi~Li~~~ 749 (936)
T 4a2w_A 738 -AGSKCILVTSKT 749 (936)
T ss_dssp --CCCEEEEESCH
T ss_pred -CCCEEEEEEeCC
Confidence 478888887665
No 60
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.71 E-value=2.8e-08 Score=110.18 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=74.7
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcC-CCc-EEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEG-LIK-CLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGR 121 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g-~i~-vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR 121 (650)
..++..+||++++.+|+.+...|++| .++ +|+||++++.|+|+|+.++||. || .|.++..|.|++||++|
T Consensus 366 ~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~----~d----~~~~~~~~~Q~~gR~~R 437 (500)
T 1z63_A 366 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FD----RWWNPAVEDQATDRVYR 437 (500)
T ss_dssp TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE----SS----CCSCC---CHHHHTTTT
T ss_pred CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE----eC----CCCCcchHHHHHHHHHH
Confidence 45678999999999999999999998 676 7999999999999999766666 33 26789999999999999
Q ss_pred CCCCCceEEEEeecCCCcHHHHHHHhcCC
Q 006319 122 RGIDERGICILMVDDKMEPSTAKMMLKGS 150 (650)
Q Consensus 122 ~g~d~~G~~ii~~~~~~~~~~~~~~~~~~ 150 (650)
.|......++.++....-++.+..++..+
T Consensus 438 ~Gq~~~v~v~~lv~~~tiee~i~~~~~~K 466 (500)
T 1z63_A 438 IGQTRNVIVHKLISVGTLEEKIDQLLAFK 466 (500)
T ss_dssp TTTTSCEEEEEEEETTSHHHHTHHHHTTC
T ss_pred cCCCCeeEEEEEEeCCCHHHHHHHHHHHH
Confidence 99877777776665553344444554443
No 61
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.68 E-value=1.9e-08 Score=121.84 Aligned_cols=56 Identities=29% Similarity=0.329 Sum_probs=39.8
Q ss_pred HhHHHHhc--cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEe----chhhhcccCCCC--ceEEEeccc
Q 006319 37 SNILPLLK--RGIGVHHSGLLPILKEVIEILFQEGLIKCLFA----TETFSIGLNMPA--KTVVFTNVR 97 (650)
Q Consensus 37 ~~l~~~l~--~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLva----T~tla~Gin~pa--~~VVi~~~~ 97 (650)
..+.+.|. ..++++||+| +.+++.|++|.++|||| |+++++|||+|. +.||+.+..
T Consensus 289 ~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 289 EEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 33444444 4789999998 36778899999999999 899999999998 566666654
No 62
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.56 E-value=6.7e-08 Score=117.28 Aligned_cols=88 Identities=23% Similarity=0.378 Sum_probs=64.9
Q ss_pred ccCEE-EEcCCCCHHHHHHHHHHHHcCCCcEEEe----chhhhcccCCCC--ceEEEecccc------------------
Q 006319 44 KRGIG-VHHSGLLPILKEVIEILFQEGLIKCLFA----TETFSIGLNMPA--KTVVFTNVRK------------------ 98 (650)
Q Consensus 44 ~~GIg-~hH~gl~~~~R~~ve~lF~~g~i~vLva----T~tla~Gin~pa--~~VVi~~~~k------------------ 98 (650)
...++ .+|| .|+. ...|++|.++|||| |+++++|||+|+ +.||+.+..+
T Consensus 333 g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l 406 (1104)
T 4ddu_A 333 KFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARV 406 (1104)
T ss_dssp TCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHH
T ss_pred CCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHH
Confidence 44566 7788 2555 99999999999999 999999999998 5556656554
Q ss_pred -------------------------------------------ccCCCcc--ccCHhHHHhhhccCCCCC--CCCceEEE
Q 006319 99 -------------------------------------------FDGDKFR--WISSGEYIQMSGRAGRRG--IDERGICI 131 (650)
Q Consensus 99 -------------------------------------------~dg~~~~--~~~~~e~~qm~GRAGR~g--~d~~G~~i 131 (650)
++|.+.. ..++.+|+||+||+||.| ....|.++
T Consensus 407 ~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi 486 (1104)
T 4ddu_A 407 LKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSV 486 (1104)
T ss_dssp HHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEE
Confidence 1111110 127889999999999954 34578999
Q ss_pred EeecCC
Q 006319 132 LMVDDK 137 (650)
Q Consensus 132 i~~~~~ 137 (650)
+++++.
T Consensus 487 ~~~~d~ 492 (1104)
T 4ddu_A 487 IFEEDE 492 (1104)
T ss_dssp EECCCH
T ss_pred EEEecH
Confidence 988554
No 63
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.54 E-value=6.2e-08 Score=112.61 Aligned_cols=90 Identities=27% Similarity=0.252 Sum_probs=70.8
Q ss_pred HHhHHHHhc-cC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCC--------CceEEEeccccccCCCc
Q 006319 36 VSNILPLLK-RG--IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMP--------AKTVVFTNVRKFDGDKF 104 (650)
Q Consensus 36 ~~~l~~~l~-~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~p--------a~~VVi~~~~k~dg~~~ 104 (650)
...|...|. .| ....||++...+|.++...|+.| +|+|||+.+++|+|++ ....||. | .
T Consensus 445 se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn----~----d 514 (844)
T 1tf5_A 445 SELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG----T----E 514 (844)
T ss_dssp HHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE----S----S
T ss_pred HHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE----e----c
Confidence 344444443 34 57899999999998888777766 6999999999999999 5566776 2 2
Q ss_pred cccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 105 RWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 105 ~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+|.+...|.|++||+||.| ..|.++++.+..
T Consensus 515 ~p~s~r~y~hr~GRTGRqG--~~G~s~~~vs~e 545 (844)
T 1tf5_A 515 RHESRRIDNQLRGRSGRQG--DPGITQFYLSME 545 (844)
T ss_dssp CCSSHHHHHHHHTTSSGGG--CCEEEEEEEETT
T ss_pred CCCCHHHHHhhcCccccCC--CCCeEEEEecHH
Confidence 5889999999999999999 678877776544
No 64
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.51 E-value=1.6e-07 Score=107.37 Aligned_cols=90 Identities=23% Similarity=0.266 Sum_probs=69.4
Q ss_pred HHhHHHHhc-cC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCC--------CceEEEeccccccCCCc
Q 006319 36 VSNILPLLK-RG--IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMP--------AKTVVFTNVRKFDGDKF 104 (650)
Q Consensus 36 ~~~l~~~l~-~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~p--------a~~VVi~~~~k~dg~~~ 104 (650)
...+...|. .| ...+||+....++.++...|+.| .|+|||+.++||+|++ ....||. ..
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn--------te 556 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG--------TE 556 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE--------SS
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe--------cC
Confidence 344444443 34 47899998888888888888777 6999999999999998 3345565 22
Q ss_pred cccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 105 RWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 105 ~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
+|-+...|.|++||+||.| ..|.++++++..
T Consensus 557 ~Pes~r~y~qriGRTGRqG--~~G~a~~fvsle 587 (822)
T 3jux_A 557 RHESRRIDNQLRGRAGRQG--DPGESIFFLSLE 587 (822)
T ss_dssp CCSSHHHHHHHHTTSSCSS--CCCEEEEEEETT
T ss_pred CCCCHHHHHHhhCccccCC--CCeeEEEEechh
Confidence 5889999999999999999 678877776655
No 65
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.50 E-value=2.3e-07 Score=105.28 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=59.0
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCc---EEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCC
Q 006319 47 IGVHHSGLLPILKEVIEILFQEGLIK---CLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRG 123 (650)
Q Consensus 47 Ig~hH~gl~~~~R~~ve~lF~~g~i~---vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g 123 (650)
+..+||.++ ..|+.+...|++|..+ ||+||+.+++|+|+|..++||. |+ .+.++..|+||+|||||.|
T Consensus 474 ~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----~~----~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 474 VARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL----AR----VVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp EEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE----ES----CCCCHHHHHHHHTTSCCCB
T ss_pred EEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE----Ee----cCCChHHHHHHHhhhcccC
Confidence 778888875 4799999999998866 8889999999999999777776 22 2668999999999999988
Q ss_pred CC
Q 006319 124 ID 125 (650)
Q Consensus 124 ~d 125 (650)
.+
T Consensus 545 ~~ 546 (590)
T 3h1t_A 545 ED 546 (590)
T ss_dssp GG
T ss_pred cc
Confidence 53
No 66
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.44 E-value=9.3e-07 Score=101.64 Aligned_cols=86 Identities=13% Similarity=0.041 Sum_probs=72.6
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCCc---EEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLIK---CLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i~---vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAG 120 (650)
...+..+||++++..|..+...|++|... +|++|...+.|+|+++.+.||. ||. |-++..+.|++||++
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~----~d~----~wnp~~~~Qa~gR~~ 511 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM----FDP----DWNPANDEQAMARVW 511 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE----CSC----CSSHHHHHHHHTTSS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE----ECC----CCCccHHHHHHHhhh
Confidence 34577899999999999999999998764 8999999999999999777776 442 678999999999999
Q ss_pred CCCCCCceEEEEeecCC
Q 006319 121 RRGIDERGICILMVDDK 137 (650)
Q Consensus 121 R~g~d~~G~~ii~~~~~ 137 (650)
|.|......++-+....
T Consensus 512 R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 512 RDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp STTCCSCEEEEEEEETT
T ss_pred hcCCCCceEEEEEEECC
Confidence 99987777776655554
No 67
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.34 E-value=4.1e-07 Score=105.57 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=71.8
Q ss_pred HHhHHHHhc-cC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCc-----------------------
Q 006319 36 VSNILPLLK-RG--IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAK----------------------- 89 (650)
Q Consensus 36 ~~~l~~~l~-~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~----------------------- 89 (650)
...|...|. .| ..+.||.+...++.+|...|+.| .|+|||+.++||+|++..
T Consensus 454 se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~ 531 (853)
T 2fsf_A 454 SELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 531 (853)
T ss_dssp HHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHH
Confidence 344444443 35 57899999999999999999999 799999999999999973
Q ss_pred --------------eEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 90 --------------TVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 90 --------------~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
..||. ..+|.+...|.|++||+||.| ..|.++++.+..
T Consensus 532 ~~~~~~~~V~~~GGl~VI~--------te~pes~riy~qr~GRTGRqG--d~G~s~~fls~e 583 (853)
T 2fsf_A 532 DWQVRHDAVLEAGGLHIIG--------TERHESRRIDNQLRGRSGRQG--DAGSSRFYLSME 583 (853)
T ss_dssp HHHHHHHHHHHTTSEEEEE--------SSCCSSHHHHHHHHTTSSGGG--CCEEEEEEEETT
T ss_pred HhhhhhhHHHhcCCcEEEE--------ccCCCCHHHHHhhccccccCC--CCeeEEEEeccc
Confidence 35555 225889999999999999999 678877776544
No 68
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.31 E-value=3.5e-06 Score=98.16 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=71.7
Q ss_pred HHhHHHHhc-cC--EEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCc-----------------------
Q 006319 36 VSNILPLLK-RG--IGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAK----------------------- 89 (650)
Q Consensus 36 ~~~l~~~l~-~G--Ig~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~----------------------- 89 (650)
...|...|. .| ..+.||.+...++.+|...|+.| .|+|||+.+++|+|++..
T Consensus 473 sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~ 550 (922)
T 1nkt_A 473 SEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPE 550 (922)
T ss_dssp HHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHH
T ss_pred HHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccch
Confidence 344444443 34 57999999988999999999988 799999999999999963
Q ss_pred -----------------------------eEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 90 -----------------------------TVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 90 -----------------------------~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
..||. ..+|.+...|.|++||+||.| ..|.++++.+..
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~--------te~pes~riy~qr~GRTGRqG--dpG~s~fflSle 617 (922)
T 1nkt_A 551 EYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG--------TERHESRRIDNQLRGRSGRQG--DPGESRFYLSLG 617 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE--------CSCCSSHHHHHHHHHTSSGGG--CCEEEEEEEETT
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe--------ccCCCCHHHHHHHhcccccCC--CCeeEEEEechh
Confidence 35555 225889999999999999999 678887777654
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.9e-06 Score=99.99 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=72.1
Q ss_pred ccCEEEEcCCCCHHHHHHHHHHHHcCCC---cEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCC
Q 006319 44 KRGIGVHHSGLLPILKEVIEILFQEGLI---KCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120 (650)
Q Consensus 44 ~~GIg~hH~gl~~~~R~~ve~lF~~g~i---~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAG 120 (650)
...+..+||++++..|..+...|++|.. .+|++|.+.+.|+|+|+.++||. ||. +-++..+.|++|||+
T Consensus 596 g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~----~D~----~wnp~~~~Qa~gR~~ 667 (800)
T 3mwy_W 596 GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI----FDS----DWNPQADLQAMARAH 667 (800)
T ss_dssp TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE----SSC----CSCSHHHHHHHTTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE----ecC----CCChhhHHHHHHHHH
Confidence 3466889999999999999999998654 49999999999999998666665 342 678999999999999
Q ss_pred CCCCCCceEEEEeecCC
Q 006319 121 RRGIDERGICILMVDDK 137 (650)
Q Consensus 121 R~g~d~~G~~ii~~~~~ 137 (650)
|.|......++-+....
T Consensus 668 RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 668 RIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CSSCCSCEEEEEEEETT
T ss_pred hcCCCceEEEEEEecCC
Confidence 99988777777666555
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.08 E-value=1.6e-05 Score=95.70 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCC--CceEEEEeec
Q 006319 58 LKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGID--ERGICILMVD 135 (650)
Q Consensus 58 ~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d--~~G~~ii~~~ 135 (650)
.|..+...|++|.++|||+|+.+..|+|.|..+|++.+ +|++...|+|++||+||.+.+ ..|.++-+..
T Consensus 637 ~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tlylD---------kpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 637 YYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLFVD---------KNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEEEE---------SCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEEEc---------cCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 37888899999999999999999999999998887764 378899999999999998753 4688887765
Q ss_pred CCCcHHHHHHHhcCCCCccccccccChHHHHHHHHhcCCChHHHHHhhHHHHHhhcCc-------cHHHHHHHHHHHHhc
Q 006319 136 DKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAI-------PDLEKQAKVLEEERD 208 (650)
Q Consensus 136 ~~~~~~~~~~~~~~~~~pl~S~~~~~~~~~l~ll~~~~~~~e~~~~~sf~~~~~~~~~-------~~~~~~l~~~~~~~~ 208 (650)
.. ......+-.-.... ....++..+|..|-..... +.....+.++...+.
T Consensus 708 ~~--~~l~~Al~~y~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 764 (1038)
T 2w00_A 708 LE--RSTIDAITLFGDKN---------------------TKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFP 764 (1038)
T ss_dssp CH--HHHHHHHHHTSCSS---------------------HHHHHBCCCHHHHHHCEECTTTCCEECCHHHHHHHHHHHCC
T ss_pred cH--HHHHHHHHHHhCCC---------------------CcCceehhhhHHHHHhhcccccccccccHHHHHHHHHHhCC
Confidence 33 22111111110100 0122344555555443211 122334555555442
Q ss_pred -cccccchhhHHHHHHHHHHHHHHHHHHH
Q 006319 209 -SMVIEEEDSLKNYYNLLQQYKSLKKDVR 236 (650)
Q Consensus 209 -~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 236 (650)
...+..+.+...|..+-.++.++...+.
T Consensus 765 ~~~~i~~~~~~~~f~~~f~~~~~~~~~l~ 793 (1038)
T 2w00_A 765 DPTSIESEKEKKDFVKLFGEYLRAENILQ 793 (1038)
T ss_dssp CSSSSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 2234456677777777777766655443
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=93.00 E-value=0.067 Score=59.81 Aligned_cols=78 Identities=18% Similarity=0.101 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCCcEEE--echhhhcccCCCC-----ceEEEeccccccCCC-----------------c----cccC
Q 006319 57 ILKEVIEILFQEGLIKCLF--ATETFSIGLNMPA-----KTVVFTNVRKFDGDK-----------------F----RWIS 108 (650)
Q Consensus 57 ~~R~~ve~lF~~g~i~vLv--aT~tla~Gin~pa-----~~VVi~~~~k~dg~~-----------------~----~~~~ 108 (650)
..|+.+.+.|++|. .||| ||..++.|||+|. +.|||.+..+-.... + .+..
T Consensus 416 ~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~ 494 (540)
T 2vl7_A 416 TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLT 494 (540)
T ss_dssp CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHH
Confidence 46888999999875 5777 8999999999996 458888775332210 0 0111
Q ss_pred HhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 109 SGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 109 ~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
...+.|-+||+-|...| .|.+++ +++.
T Consensus 495 ~~~~~Q~~GR~iR~~~D-~g~v~l-lD~R 521 (540)
T 2vl7_A 495 AIVIKQTIGRAFRDPND-YVKIYL-CDSR 521 (540)
T ss_dssp HHHHHHHHHHHCCSTTC-CCEEEE-ESGG
T ss_pred HHHHHHHhCCcccCCCc-cEEEEE-Eccc
Confidence 35678999999998755 787665 4544
No 72
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.68 E-value=0.61 Score=53.57 Aligned_cols=171 Identities=10% Similarity=0.035 Sum_probs=109.7
Q ss_pred HHHHHHHHHhHhCCcCCCC---ccchhhhHHhhhcCCchhHHHHHHHhCCCC--CCChhHHHHHhhcce-eeccCCCCCC
Q 006319 458 ELKARKRVLRRLGYATSDD---VVELKGKVACEISSAEELTLTELIFNGVLK--DVKVEEMVSLLSCFV-WQEKLQDASK 531 (650)
Q Consensus 458 e~~~~~~VL~~Lgyid~~~---~vt~KGrvA~eI~s~dELllTEllf~g~f~--~L~p~eiaAllS~fV-~qek~~~~~~ 531 (650)
.+..-++.|.++|+|+.++ .+|.-||+++..+- +. -++.++..+.=. .....++..++|+.- |+ ...
T Consensus 472 ~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~-----~~~ 544 (715)
T 2va8_A 472 YFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYI-NP-FTADIIRKGLEGHKASCELAYLHLLAFTPDGP-----LVS 544 (715)
T ss_dssp HHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTC-CH-HHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSC-----CCC
T ss_pred HHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcC-CH-hHHHHHHHHhhhccCCCHHHHHHHhhcCcccc-----cCc
Confidence 4778889999999998764 79999999999874 33 334444433211 244556666555432 21 112
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcC---CCccccccccc-CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHH
Q 006319 532 PREELELLFTQLQDTARRVAKVQLECK---VQIDVEGFVNS-FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRR 607 (650)
Q Consensus 532 l~~~L~~~~~~l~~~a~~I~~v~~e~~---l~i~~~~y~~~-~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irR 607 (650)
..+.=... +.+.+.+ . ...+ .++...+|... .++...-+.++|.++.+..+|++..++..||+......
T Consensus 545 ~r~~e~~~---l~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~ 617 (715)
T 2va8_A 545 VGRNEEEE---LIELLED---L-DCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVET 617 (715)
T ss_dssp CCHHHHHH---HHHHHTT---C-SSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cChHHHHH---HHHHHHh---c-chhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHH
Confidence 22221111 1111100 0 0111 11111111110 12345667899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCCe
Q 006319 608 LEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDI 642 (650)
Q Consensus 608 L~Ellrq~~~Aa~~iGn~~L~~k~~~a~~~IkRdI 642 (650)
..-+++.+..-|...|...+...+..-...|..++
T Consensus 618 a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv 652 (715)
T 2va8_A 618 MDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGI 652 (715)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988888777777666655
No 73
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=86.70 E-value=4.8 Score=46.00 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhHhCCcCCC--CccchhhhHHhhhcCCchhHHHHHHHhCCCCC-CChhHHHHHhhcce-eeccCCCCCC
Q 006319 456 KDELKARKRVLRRLGYATSD--DVVELKGKVACEISSAEELTLTELIFNGVLKD-VKVEEMVSLLSCFV-WQEKLQDASK 531 (650)
Q Consensus 456 ~~e~~~~~~VL~~Lgyid~~--~~vt~KGrvA~eI~s~dELllTEllf~g~f~~-L~p~eiaAllS~fV-~qek~~~~~~ 531 (650)
.+.+..-++.|.++|+|+.+ ..+|.-||+++..+- + --.++++..+.=.. .+..++-.++|+.- |+ +-..+
T Consensus 452 ~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~---~i~~r 526 (702)
T 2p6r_A 452 SYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYI-D-PLTGFIFHDVLSRMELSDIGALHLICRTPDME---RLTVR 526 (702)
T ss_dssp HHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTC-C-HHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSC---CCCCC
T ss_pred HHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhC-C-HHHHHHHHHHhhcccCCHHHHHHHhhCCcccc---cCCCC
Confidence 34677888999999999876 689999999999874 3 44456666654332 44555555554321 21 00011
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCC-Ccc---ccccccc-CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHH
Q 006319 532 PREELELLFTQLQDTARRVAKVQLECKV-QID---VEGFVNS-FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIR 606 (650)
Q Consensus 532 l~~~L~~~~~~l~~~a~~I~~v~~e~~l-~i~---~~~y~~~-~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~ir 606 (650)
.. + . .+. +...+ . .+++ +++ ..+|... .++...-+.++|.+|.++.+|++..++..||+.....
T Consensus 527 ~~-e-~-~~~---~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~ 595 (702)
T 2p6r_A 527 KT-D-S-WVE---EEAFR---L--RKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVE 595 (702)
T ss_dssp TT-T-H-HHH---HHHHH---H--GGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred Cc-h-H-HHH---HHHHh---c--cccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHH
Confidence 11 2 1 111 11111 0 1222 222 1001100 2234567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCH
Q 006319 607 RLEEVLQQLILAAKSIGET 625 (650)
Q Consensus 607 RL~Ellrq~~~Aa~~iGn~ 625 (650)
...-+++-+...+...|..
T Consensus 596 ~a~~l~~a~~~i~~~~g~~ 614 (702)
T 2p6r_A 596 TAEWLSNAMNRIAEEVGNT 614 (702)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCHH
Confidence 9888998888888888864
No 74
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=85.79 E-value=3.6 Score=47.18 Aligned_cols=173 Identities=13% Similarity=0.054 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhHhCCcC-CCC---ccchhhhHHhhhcCCchhHHHHHHHhCCCC---CCChhHHHHHhhcce-eeccCC
Q 006319 456 KDELKARKRVLRRLGYAT-SDD---VVELKGKVACEISSAEELTLTELIFNGVLK---DVKVEEMVSLLSCFV-WQEKLQ 527 (650)
Q Consensus 456 ~~e~~~~~~VL~~Lgyid-~~~---~vt~KGrvA~eI~s~dELllTEllf~g~f~---~L~p~eiaAllS~fV-~qek~~ 527 (650)
.+.+..-++.|.++|+|+ .++ .+|.-|+++++.+- +. ..++++...+=. ..+..++-.++|..- |+
T Consensus 453 ~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~---- 526 (720)
T 2zj8_A 453 EEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYI-DP-YTAKMFKDKMEEVVKDPNPIGIFHLISLTPDIT---- 526 (720)
T ss_dssp HHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTC-CH-HHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCC----
T ss_pred HHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcC-CH-HHHHHHHHHHHhhccCCCHHHHHHHhccCcccc----
Confidence 346777889999999998 544 78999999999884 33 233443332211 134456666655432 21
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHc--CCCccc--cc--cccc-CCccHHHHHHHHhCCCCHHHHHhhCCCCCCh
Q 006319 528 DASKPREELELLFTQLQDTARRVAKVQLEC--KVQIDV--EG--FVNS-FRPDIMEAVYAWAKGSKFYEIMEITPVFEGS 600 (650)
Q Consensus 528 ~~~~l~~~L~~~~~~l~~~a~~I~~v~~e~--~l~i~~--~~--y~~~-~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~ 600 (650)
.....+.=. ..+.+... +...+. .+++.. ++ |... .++...-+.++|.++.+..+|++..++..||
T Consensus 527 -~i~~r~~e~---~~l~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gd 599 (720)
T 2zj8_A 527 -PFNYSKREF---ERLEEEYY---EFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGD 599 (720)
T ss_dssp -CCCCCHHHH---HHHHHHHH---HHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHH
T ss_pred -ccccCHHHH---HHHHHHHH---hccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHh
Confidence 112222111 11221111 111111 122221 00 1100 2233566789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCC
Q 006319 601 LIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRD 641 (650)
Q Consensus 601 IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~~~a~~~IkRd 641 (650)
+........-+++-+...+...|...+...+.+-+..|.-+
T Consensus 600 l~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~g 640 (720)
T 2zj8_A 600 IYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYG 640 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999877666666555544433
No 75
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=80.72 E-value=1.5 Score=49.69 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCcEEEech--hhhcccCCCC---ceEEEeccccccC----------------CCccc-c--
Q 006319 52 SGLLPILKEVIEILFQEGLIKCLFATE--TFSIGLNMPA---KTVVFTNVRKFDG----------------DKFRW-I-- 107 (650)
Q Consensus 52 ~gl~~~~R~~ve~lF~~g~i~vLvaT~--tla~Gin~pa---~~VVi~~~~k~dg----------------~~~~~-~-- 107 (650)
.|+....|..+.+.|+ |.=.|||+|. .|..|||+|. +.|||.++.+-.. .++.+ +
T Consensus 477 q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~ 555 (620)
T 4a15_A 477 RGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVY 555 (620)
T ss_dssp TTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHH
T ss_pred CCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHH
Confidence 4555667889999999 8888999985 8999999996 7899988753211 11000 1
Q ss_pred -CHhHHHhhhccCCCCCCCCceEEEEeecCC
Q 006319 108 -SSGEYIQMSGRAGRRGIDERGICILMVDDK 137 (650)
Q Consensus 108 -~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~ 137 (650)
....+.|-+||+=|.-.| .|.++++ ++.
T Consensus 556 pa~~~l~Qa~GRlIR~~~D-~G~v~ll-D~R 584 (620)
T 4a15_A 556 PTAIKIRQEIGRLIRSAED-TGACVIL-DKR 584 (620)
T ss_dssp HHHHHHHHHHHTTCCSTTC-CEEEEEE-CGG
T ss_pred HHHHHHHHHhCccccCCCc-eEEEEEE-ccc
Confidence 234567999999988754 8877664 554
No 76
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=78.68 E-value=3.4 Score=37.43 Aligned_cols=66 Identities=9% Similarity=0.231 Sum_probs=53.3
Q ss_pred cCCccHHHHHHHH-hCCCCHHHHHhhCCC-CCChHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 006319 569 SFRPDIMEAVYAW-AKGSKFYEIMEITPV-FEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAV 635 (650)
Q Consensus 569 ~~~~~Lm~vVy~W-A~G~~F~eI~~~Tdl-~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~~~a~ 635 (650)
.|++.+++-+..+ +.|.|+.+||...+| ..-+|=||+.+=.|+..++..|= ..+...+...+.+..
T Consensus 12 k~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~Ar-~~~~~~~~~~~~~ia 79 (140)
T 4dyq_A 12 DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKAT-EARADSIFEEIFEIA 79 (140)
T ss_dssp SCCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5788899888888 899999999999999 79999999999999888887763 335555555555443
No 77
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=75.29 E-value=21 Score=35.95 Aligned_cols=135 Identities=18% Similarity=0.212 Sum_probs=73.5
Q ss_pred HHHHHHHHHhHhCCcCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccCCCCCCCcHHHH
Q 006319 458 ELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELE 537 (650)
Q Consensus 458 e~~~~~~VL~~Lgyid~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~~~~~~l~~~L~ 537 (650)
.+.+=+..|..||-+|++|.+|.-||..+++-- |.-+---++....|.-+ ++++.+.|++-.++ .. ..+... +
T Consensus 19 ~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl-~P~lakmLl~a~~~~c~--~~~l~iaA~Ls~~~--~f-~~p~~~-~ 91 (270)
T 3i4u_A 19 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL-EPMLCKMLIMSVHLGCS--EEMLTIVSMLSVQN--VF-YRPKDK-Q 91 (270)
T ss_dssp HHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS-CHHHHHHHHHHHHTTCH--HHHHHHHHHHTSSC--CB-CCCGGG-H
T ss_pred HHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC-CHHHHHHHHHhhhcCCH--HHHHHHHHHHCCCc--cc-cCCchh-H
Confidence 455668899999999999999999999999974 54444444444455533 34433444333221 00 012111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHH
Q 006319 538 LLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLIL 617 (650)
Q Consensus 538 ~~~~~l~~~a~~I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~ 617 (650)
+ .++ +...+......|+ ..+..+..+|.+...=.+-|..--+. .|.+++..++-+|+..
T Consensus 92 ~-------~a~-----~~~~~f~~~~sD~-----ltlLn~~~~~~~~~~~~~wC~~~fL~----~~~l~~~~~ir~QL~~ 150 (270)
T 3i4u_A 92 A-------LAD-----QKKAKFHQTEGDH-----LTLLAVYNSWKNNKFSNPWCYENFIQ----ARSLRRAQDIRKQMLG 150 (270)
T ss_dssp H-------HHH-----HHHHTTCBTTBHH-----HHHHHHHHHHHHTTTCHHHHHHTTBC----HHHHHHHHHHHHHHHH
T ss_pred H-------HHH-----HHHHHccCCCChH-----HHHHHHHHHHHHcCchhhHHHHhcCC----HHHHHHHHHHHHHHHH
Confidence 1 111 0111222222222 35777778886433223445543333 4667788888888877
Q ss_pred hhh
Q 006319 618 AAK 620 (650)
Q Consensus 618 Aa~ 620 (650)
..+
T Consensus 151 ~l~ 153 (270)
T 3i4u_A 151 IMD 153 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 78
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=67.02 E-value=5.3 Score=44.37 Aligned_cols=88 Identities=16% Similarity=0.067 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHH-cCCCcEEEec--hhhhcccCCC------CceEEEecccc-------------cc---CC-Cc-
Q 006319 52 SGLLPILKEVIEILFQ-EGLIKCLFAT--ETFSIGLNMP------AKTVVFTNVRK-------------FD---GD-KF- 104 (650)
Q Consensus 52 ~gl~~~~R~~ve~lF~-~g~i~vLvaT--~tla~Gin~p------a~~VVi~~~~k-------------~d---g~-~~- 104 (650)
.+++ +..+...|+ +|. -||||| ..|..|||+| .+.|||.++.+ ++ |. +.
T Consensus 422 ~~~~---~~~~~~~~~~~~~-~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~ 497 (551)
T 3crv_A 422 EDSS---VEDLYSAISANNK-VLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEE 497 (551)
T ss_dssp SSCC---HHHHHHHTTSSSS-CEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHH
T ss_pred CCCC---HHHHHHHHHhcCC-eEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhH
Confidence 4554 455677785 444 799998 5899999999 38899988642 22 11 11
Q ss_pred ccc---CHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHH
Q 006319 105 RWI---SSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKM 145 (650)
Q Consensus 105 ~~~---~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~ 145 (650)
..+ ....+.|-+||+=|...| .|.+++ +++......+..
T Consensus 498 ~~y~~pa~~~l~Qa~GRlIR~~~D-~G~v~l-lD~R~~~~~~~~ 539 (551)
T 3crv_A 498 FLFKIPALVTIKQAIGRAIRDVND-KCNVWL-LDKRFESLYWKK 539 (551)
T ss_dssp HHTHHHHHHHHHHHHHTTCCSTTC-EEEEEE-ESGGGGSHHHHH
T ss_pred HHHHHHHHHHHHHHhccCccCCCc-cEEEEE-eehhcccchhhh
Confidence 001 245678999999988755 887666 455533333333
No 79
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=61.29 E-value=8 Score=29.57 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=40.0
Q ss_pred ccCCccHHHHHHH-HhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhh
Q 006319 568 NSFRPDIMEAVYA-WAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKS 621 (650)
Q Consensus 568 ~~~~~~Lm~vVy~-WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~ 621 (650)
..+.+.--.++.. +..|.|+.+|.+..+++++.+=+.+.|.-.-|++.-....+
T Consensus 14 ~~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp TSSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4566666677765 69999999999999999999999999988888776554433
No 80
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=60.66 E-value=42 Score=33.13 Aligned_cols=122 Identities=9% Similarity=0.053 Sum_probs=69.4
Q ss_pred HHHHHHHHHhHhCCcCC----CC------ccchhhhHHhhhcCCchhHHHHHHHhCCCCC-CChhHHHHHhhcceeeccC
Q 006319 458 ELKARKRVLRRLGYATS----DD------VVELKGKVACEISSAEELTLTELIFNGVLKD-VKVEEMVSLLSCFVWQEKL 526 (650)
Q Consensus 458 e~~~~~~VL~~Lgyid~----~~------~vt~KGrvA~eI~s~dELllTEllf~g~f~~-L~p~eiaAllS~fV~qek~ 526 (650)
..-.+++=|++.|||.. .+ .+|.||+-..+-.. -.+.++ +++++.+ ++. |
T Consensus 66 t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~---~~~~~~-~eq~s~E~~~~-------~-------- 126 (250)
T 1p4x_A 66 DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERV---TLFDQI-IKQFNLADQSE-------S-------- 126 (250)
T ss_dssp GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHH---HHHHHH-HHHHHHHTTCC-------S--------
T ss_pred hHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHH---HHHHHH-HHHHhcccccc-------c--------
Confidence 44567888999999942 22 38999987432210 001111 1222211 111 1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCccHHHHHHHHhCC---CCHHHHHhhCCCCCChHHH
Q 006319 527 QDASKPREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKG---SKFYEIMEITPVFEGSLIR 603 (650)
Q Consensus 527 ~~~~~l~~~L~~~~~~l~~~a~~I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G---~~F~eI~~~Tdl~EG~IVR 603 (650)
+.++..+...+.....+......+...+|+... .+.=..+-|..| .+..+|.+...+..+++.|
T Consensus 127 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~----------q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~ 193 (250)
T 1p4x_A 127 ---QMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFV----------EFTILAIITSQNKNIVLLKDLIETIHHKYPQTVR 193 (250)
T ss_dssp ---SCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHH----------HHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHH----------HHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHH
Confidence 122333444333333344444556667776543 233334445543 7999999999999999999
Q ss_pred HHHHHHHH
Q 006319 604 AIRRLEEV 611 (650)
Q Consensus 604 ~irRL~El 611 (650)
.+.||++-
T Consensus 194 ~v~rLe~~ 201 (250)
T 1p4x_A 194 ALNNLKKQ 201 (250)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHC
Confidence 99999863
No 81
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=57.57 E-value=16 Score=43.12 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=28.5
Q ss_pred hHHHHhccCEE--EEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCC
Q 006319 38 NILPLLKRGIG--VHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA 88 (650)
Q Consensus 38 ~l~~~l~~GIg--~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa 88 (650)
++...++.||. +.++.-...+-++|-++=+. =.|-|||..+++|.|+--
T Consensus 535 ~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~--GaVTIATNMAGRGTDIkL 585 (997)
T 2ipc_A 535 HTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRS--KTVTIATNMAGRGTDIKL 585 (997)
T ss_dssp HHHHHHHHCCCCCEECSSSHHHHHHHHHTTTST--TCEEEECSSTTTTSCCCS
T ss_pred hhhHHHHcCCCeeeccccchHHHHHHHHhcCCC--CeEEEEecccCCCcCeec
Confidence 34455567763 33344223333333333333 368899999999999864
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=54.14 E-value=8 Score=26.89 Aligned_cols=34 Identities=3% Similarity=-0.156 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHH
Q 006319 575 MEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRL 608 (650)
Q Consensus 575 m~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL 608 (650)
..++..|..|.+..+|.+..++...+|-|++++.
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 4667778999999999999999999999998764
No 83
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=51.73 E-value=41 Score=28.87 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=50.7
Q ss_pred cCCccHHHHHHH-HhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhc
Q 006319 569 SFRPDIMEAVYA-WAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIK 639 (650)
Q Consensus 569 ~~~~~Lm~vVy~-WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~~~a~~~Ik 639 (650)
.+.+.--+|+.. +..|.|..+|.+..+++++++=+.+.|.-.-|++.-... |..+...+..+....|+
T Consensus 25 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~---~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL---ELYQKFEQRREIYDEMK 93 (113)
T ss_dssp GSCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHHHHH
Confidence 455566666665 489999999999999999999999999888888765443 44555556655555554
No 84
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=51.11 E-value=8.3 Score=30.87 Aligned_cols=24 Identities=17% Similarity=0.506 Sum_probs=19.5
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHH
Q 006319 589 EIMEITPVFEGSLIRAIRRLEEVL 612 (650)
Q Consensus 589 eI~~~Tdl~EG~IVR~irRL~Ell 612 (650)
+++..-++.||||||.++.++...
T Consensus 42 ~~Lr~LGi~eGDIIrVmk~l~~k~ 65 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKKF 65 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCchhhHHHHHHHHHHHh
Confidence 455666788999999999998764
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=49.02 E-value=2.2 Score=35.12 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=37.4
Q ss_pred CCccH-HHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHh
Q 006319 570 FRPDI-MEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILA 618 (650)
Q Consensus 570 ~~~~L-m~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~A 618 (650)
|.+.+ ..+|..+..|.|..+|++..+|...+|=||+++..+.-.+.+..
T Consensus 23 ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~~ 72 (87)
T 2elh_A 23 LTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMSRQS 72 (87)
T ss_dssp CCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccccccCC
Confidence 33444 46666677899999999999999999999999887655554443
No 86
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=44.10 E-value=20 Score=41.57 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhHhCCcCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCCh-hHHHHHhh
Q 006319 457 DELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKV-EEMVSLLS 518 (650)
Q Consensus 457 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p-~eiaAllS 518 (650)
..+.+-++.|..+|.||+++.+|.-||.++++.- +.-+---++....|.-+++ -.|||+||
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~~~~l~i~a~ls 550 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPL-DPMLAVMLIGSFEFQCSQEILTIVAMLS 550 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccC-CHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence 4567778899999999999999999999999984 5544444444445543332 34445555
No 87
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=37.89 E-value=32 Score=28.06 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=39.5
Q ss_pred cCCccHHHHHHH-HhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHH
Q 006319 569 SFRPDIMEAVYA-WAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLIL 617 (650)
Q Consensus 569 ~~~~~Lm~vVy~-WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~ 617 (650)
.+.+.--+|+.. +..|.|+.+|-+..++.++.|=+.+.|.-.-||+.-.
T Consensus 37 ~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344556666665 7899999999999999999999888888877776543
No 88
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=37.34 E-value=32 Score=26.27 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=38.8
Q ss_pred ccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 006319 568 NSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 613 (650)
Q Consensus 568 ~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellr 613 (650)
..+.+.=.+++..++.|.|..+|.+..++.++++=+.+.|+-+-|+
T Consensus 10 ~~L~~~e~~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4567777888888999999999999999999999888888765553
No 89
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=35.81 E-value=59 Score=28.35 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCcccccccccCCccHHHHHHHHh-CCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 550 VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWA-KGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 550 I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA-~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
+......+|+... .+.++..++... .|.+..+|.+...+..+.+-|.+.||++
T Consensus 30 ~~~~~~~~glt~~--------q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 30 ADARLAELGLNSQ--------QGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp HHHHHHHTTCCHH--------HHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHCCCCHH--------HHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4445556676443 244666666654 6899999999999999999999999986
No 90
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=35.48 E-value=84 Score=25.20 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=41.2
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006319 388 EANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRS 449 (650)
Q Consensus 388 ~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 449 (650)
|..++-.+..|..+..+.+.|...+........|+- +.-++-.+|..|..+|..+-.+...
T Consensus 9 I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 9 ISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455677888898888888888876555545544 4455556777777777777665444
No 91
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.10 E-value=32 Score=27.54 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=39.8
Q ss_pred ccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 006319 566 FVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 613 (650)
Q Consensus 566 y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellr 613 (650)
.+..+.+.-.+|+..++.|.+..||.+..++.+++|=+.++|.-.-|+
T Consensus 18 ~~~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CGGGSCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 345577777888888899999999999999999999888887665553
No 92
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=33.88 E-value=57 Score=29.11 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhCCc----CCCC------ccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcc
Q 006319 456 KDELKARKRVLRRLGYA----TSDD------VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 520 (650)
Q Consensus 456 ~~e~~~~~~VL~~Lgyi----d~~~------~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~f 520 (650)
.+..-+.++-|.+.||| |.++ .+|.+|+-..+-. .-...-+.+.+|.+|+++|++.+...+
T Consensus 60 ~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~----~~~~~~~~~~~~~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 60 QPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV----DGVISSTRKEILGGISSDEIAVLSGLI 130 (151)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHH
No 93
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.46 E-value=18 Score=25.35 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHH
Q 006319 575 MEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRL 608 (650)
Q Consensus 575 m~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL 608 (650)
-.++..|..|.+..+|++..++...+|-|++++.
T Consensus 12 ~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 12 EQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4566668899999999999999999998887664
No 94
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=33.04 E-value=1.3e+02 Score=25.76 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 574 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 574 Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
++..++. ..|.+..+|.+..++..+++-|.+.||++
T Consensus 42 vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 42 VLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp HHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred HHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4444444 25899999999999999999999999987
No 95
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=32.98 E-value=66 Score=27.52 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHc-CCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 540 FTQLQDTARRVAKVQLEC-KVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 540 ~~~l~~~a~~I~~v~~e~-~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
...+..+.+.+.....+. |+... ...++..++. ..+.+..+|.+..++..+.+-|.+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 9 LYRLKVADETISNLFEKQLGISLT--------RYSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHH--------HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHH--------HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555555444 55432 1234444433 46799999999999999999999999987
No 96
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.15 E-value=41 Score=24.72 Aligned_cols=37 Identities=11% Similarity=-0.037 Sum_probs=31.0
Q ss_pred HHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHH
Q 006319 576 EAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVL 612 (650)
Q Consensus 576 ~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ell 612 (650)
+|+..++.|.|..+|-+..++.++++=..++|+-+-|
T Consensus 5 ~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 5 QVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4566689999999999999999999988877766544
No 97
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=30.83 E-value=1.1e+02 Score=26.14 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=40.6
Q ss_pred cCCccHHHHHHH-HhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHh
Q 006319 569 SFRPDIMEAVYA-WAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILA 618 (650)
Q Consensus 569 ~~~~~Lm~vVy~-WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~A 618 (650)
.+.+.--+++.. +..|.|..+|.+..+++++++=+.+.|.-.-|++.-..
T Consensus 22 ~L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 72 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMK 72 (113)
T ss_dssp GSCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665 58999999999999999999999999988877765443
No 98
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=28.45 E-value=86 Score=27.07 Aligned_cols=52 Identities=8% Similarity=-0.043 Sum_probs=37.5
Q ss_pred HHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 550 VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 550 I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
+......+|+... .+.++.+++. ..|.+..+|.+..++..+++-|.+.+|++
T Consensus 20 ~~~~~~~~~lt~~--------q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 20 FDKWIGQQDLNYN--------LFAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp HHHHHHTTTCCHH--------HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH--------HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444555665433 1335555544 45799999999999999999999999986
No 99
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=27.77 E-value=85 Score=36.38 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=39.7
Q ss_pred cCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhh-cccCCCCceEEEe
Q 006319 45 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFS-IGLNMPAKTVVFT 94 (650)
Q Consensus 45 ~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla-~Gin~pa~~VVi~ 94 (650)
..++..||+++...|..+...+.+|..+|+|+|...- ..+++..-.+||.
T Consensus 446 i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 4688999999999999999999999999999997644 3466666444444
No 100
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=27.06 E-value=1.1e+02 Score=27.35 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=28.4
Q ss_pred cHHHHHHHH-hCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 573 DIMEAVYAW-AKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 573 ~Lm~vVy~W-A~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
.++.+++.. -.|.+..+|.+...+..+++-|.+.||++
T Consensus 50 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 50 NTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 355555554 35899999999999999999999999986
No 101
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.67 E-value=33 Score=26.75 Aligned_cols=44 Identities=7% Similarity=-0.090 Sum_probs=35.0
Q ss_pred CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 006319 570 FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 613 (650)
Q Consensus 570 ~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellr 613 (650)
+.+.--+|+..+..|.+..+|.+..++.++++=+.+.|.-.-|+
T Consensus 17 L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 44455666777789999999999999999998887777666554
No 102
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=26.64 E-value=91 Score=27.09 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhHhCCcCCC----------CccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcc
Q 006319 457 DELKARKRVLRRLGYATSD----------DVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 520 (650)
Q Consensus 457 ~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~f 520 (650)
+..-+.++-|.+-|||... -.+|.+|+-..+-. .-..+-+...+|.+++++|+..+...+
T Consensus 72 ~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~----~~~~~~~~~~~~~~l~~~e~~~l~~~L 141 (148)
T 3jw4_A 72 ASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEF----NNIFLEVEESITKGLTKDEQKQLMSIL 141 (148)
T ss_dssp -CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHH----HHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3456778899999999642 14899999776543 123455667788999999998887654
No 103
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=25.49 E-value=80 Score=27.53 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=29.5
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 573 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 573 ~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
.++.+++.--.|.+..+|.+...+..+++-|.+.||++
T Consensus 43 ~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 43 SVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp HHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 34444443223569999999999999999999999975
No 104
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.36 E-value=55 Score=28.70 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=38.5
Q ss_pred CCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHh
Q 006319 570 FRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILA 618 (650)
Q Consensus 570 ~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~A 618 (650)
+.+.--.|+..+..|.|+.||.+..+++++.+=+.+.|.-.-||+.-..
T Consensus 110 L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 110 FSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445565688999999999999999999988888877777765443
No 105
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=25.30 E-value=45 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=30.7
Q ss_pred cHHHHHHHHh-CCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 573 DIMEAVYAWA-KGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 573 ~Lm~vVy~WA-~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
.++..++..- .|.+..+|.+..++..+++-|.+.||++
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3455554432 3889999999999999999999999986
No 106
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=24.93 E-value=68 Score=27.64 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=30.7
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 573 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 573 ~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
.++.+++ ..|.+..+|.+..++..+.+-|.+++|++
T Consensus 41 ~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 41 LVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp HHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3455554 77889999999999999999999999987
No 107
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=24.37 E-value=95 Score=26.48 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=25.5
Q ss_pred CCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 584 GSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 584 G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
|.+..+|.+..++..+.+-|.+.||++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 589999999999999999999999986
No 108
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=24.33 E-value=66 Score=26.41 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=37.8
Q ss_pred ccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 006319 568 NSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 613 (650)
Q Consensus 568 ~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellr 613 (650)
..+.+.-.+|+...+.|.+..+|-+..++.+++|=..+.|.-.-|+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4466677788888899999999999999999999888887766554
No 109
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=23.88 E-value=70 Score=27.60 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhHhCCcCC-----CC-----ccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcc
Q 006319 456 KDELKARKRVLRRLGYATS-----DD-----VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 520 (650)
Q Consensus 456 ~~e~~~~~~VL~~Lgyid~-----~~-----~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~f 520 (650)
.+..-+.++-|.+.|||.. |. .+|.+|+-+.+-.. -...-++..+|.+++++|+..+...+
T Consensus 65 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 135 (143)
T 3oop_A 65 TPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR----DIVEASCEKMFAGVTRTDLEQFTAIL 135 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3567788999999999963 21 48999998875431 23344566678899999998876544
No 110
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=23.59 E-value=55 Score=28.95 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCcccccccccCCccHHHHHHHHhC-CCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 549 RVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAK-GSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 549 ~I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~-G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
++......+|+... .+.++.+++.|-. +.+..+|.+...+.-+++-|.+.||++
T Consensus 23 ~~~~~l~~~gLt~~--------q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 23 EVDAVVKPYGLTFA--------RYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp HHHHHHGGGTCCHH--------HHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH--------HHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34445556676543 2345556666654 479999999999999999999999976
No 111
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=23.51 E-value=1.2e+02 Score=26.05 Aligned_cols=37 Identities=11% Similarity=0.307 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 006319 574 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 611 (650)
Q Consensus 574 Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~El 611 (650)
++..++. ..|.+..+|.+...+..+++-|.+++|++-
T Consensus 42 iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 42 VLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp HHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred HHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 4444432 346899999999999999999999999873
No 112
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.40 E-value=51 Score=26.74 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=39.0
Q ss_pred cccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 006319 567 VNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 613 (650)
Q Consensus 567 ~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellr 613 (650)
+..+.+.-.+|+..++.|.|..+|.+..++.+++|=..+.|.-.-|+
T Consensus 27 l~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGGCCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34577777888888899999999999999999999888777665553
No 113
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=23.07 E-value=1.2e+02 Score=25.56 Aligned_cols=36 Identities=8% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 574 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 574 Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
++..++. ..|.+..+|.+..++..+++-|.+++|++
T Consensus 38 iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 38 VIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp HHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred HHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4444432 35689999999999999999999999987
No 114
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=23.01 E-value=1.1e+02 Score=28.27 Aligned_cols=68 Identities=7% Similarity=0.047 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCccHHHHHHHH-hCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 537 ELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAW-AKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 537 ~~~~~~l~~~a~~I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~W-A~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
...+..+..++..+.......--+++.. .+.++.+++.. -.|.+..+|.+...+.-+++-|.+.+|++
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~lt~~------q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 15 NQTYATLFTLTNKIQIEGDKYFGILTSR------QYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCHH------HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHH------HHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555555555544333321123321 22344444443 35899999999999999999999999976
No 115
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.89 E-value=1.6e+02 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 574 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 574 Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
++..++....|.+..+|.+..++..+.+-|.+++|++
T Consensus 40 iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 40 VLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 4444444346889999999999999999999999987
No 116
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=22.63 E-value=48 Score=26.95 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=30.5
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 006319 573 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 611 (650)
Q Consensus 573 ~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~El 611 (650)
.++..+.. ..+.++.+|.+.+++..+++-|.+.+|.+-
T Consensus 24 ~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 24 RIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34444432 478899999999999999999999999763
No 117
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=22.30 E-value=57 Score=28.24 Aligned_cols=60 Identities=8% Similarity=0.077 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhHhCCcCCC----------CccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcc
Q 006319 457 DELKARKRVLRRLGYATSD----------DVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 520 (650)
Q Consensus 457 ~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~f 520 (650)
+..-+.++-|.+.|||... -.+|.+|+-..+-.. + ..+-+++.+|.+++++|+..+...+
T Consensus 66 ~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 135 (142)
T 3ech_A 66 ALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE--L--IMSRVHDELFAPLTPVEQATLVHLL 135 (142)
T ss_dssp CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3566778899999999641 148999998776432 1 3344455667889999998887654
No 118
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=22.02 E-value=39 Score=30.60 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=31.4
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 573 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 573 ~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
.++.+++..-.|.+..+|.+...+..+.+-|.+.||++
T Consensus 57 ~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 57 VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp HHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 35555555456789999999999999999999999986
No 119
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.57 E-value=67 Score=27.65 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=30.9
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 573 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 573 ~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
.++.+++. ..|.++.+|.+..++..+++-|.+++|++
T Consensus 37 ~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 37 DILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 35555544 56899999999999999999999999986
No 120
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=21.56 E-value=79 Score=28.45 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhHhCCcCCC----C------ccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcc
Q 006319 456 KDELKARKRVLRRLGYATSD----D------VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 520 (650)
Q Consensus 456 ~~e~~~~~~VL~~Lgyid~~----~------~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~f 520 (650)
.+..-+.++-|.+.|||... + .+|.+|+-+.+-.. -..+-+++.+|.+++++|+..+...+
T Consensus 82 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 152 (166)
T 3deu_A 82 QPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME----EVIHKTRGEILAGISSEEIELLIKLI 152 (166)
T ss_dssp HHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH----HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34667789999999999642 1 48999998876532 12334555667788888888776554
No 121
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=21.33 E-value=49 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=31.3
Q ss_pred cHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 573 DIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 573 ~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
.++.+++.. .|.+..+|.+..++..+++-|.+.+|++
T Consensus 41 ~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 41 SVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp HHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 355555554 7889999999999999999999999986
No 122
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=21.22 E-value=96 Score=26.48 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhHhCCcCC-----CC-----ccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcc
Q 006319 456 KDELKARKRVLRRLGYATS-----DD-----VVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 520 (650)
Q Consensus 456 ~~e~~~~~~VL~~Lgyid~-----~~-----~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~f 520 (650)
.+..-+.++-|.+.|||.. |. .+|.+|+-..+-.. -..+-+.+.+|.+++++|+..+...+
T Consensus 61 ~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 131 (139)
T 3eco_A 61 GPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT----SIFDEMEQTLVSQLSEEENEQMKANL 131 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3567778999999999953 11 48999998876532 12334456677889999988876654
No 123
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=21.18 E-value=79 Score=28.05 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhCCcCCCCc----------cchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcc
Q 006319 456 KDELKARKRVLRRLGYATSDDV----------VELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 520 (650)
Q Consensus 456 ~~e~~~~~~VL~~Lgyid~~~~----------vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~f 520 (650)
.+..-+.++-|.+.|||..... +|.+|+-+++-. .-..+-++..+|.+++++|+..+...+
T Consensus 81 ~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~----~~~~~~~~~~~~~~l~~~e~~~l~~~L 151 (161)
T 3e6m_A 81 QSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEI----SPLINDFHAELVGNVDPDKLQTCIEVL 151 (161)
T ss_dssp HHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHH----HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHH
No 124
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=20.96 E-value=78 Score=27.63 Aligned_cols=61 Identities=5% Similarity=0.031 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhHhCCcCCC----------CccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcc
Q 006319 456 KDELKARKRVLRRLGYATSD----------DVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCF 520 (650)
Q Consensus 456 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~f 520 (650)
.+..-+.++-|.+.|||... -.+|.+|+-+.+-.. -...-++..+|.+++++|+..+...+
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 138 (150)
T 3fm5_A 68 PSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK----ARVDAAHGRYFEGIPDTVVNQMRDTL 138 (150)
T ss_dssp HHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35667788999999999641 148999998876542 22334456667889999988876654
No 125
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=20.84 E-value=1.2e+02 Score=23.16 Aligned_cols=47 Identities=6% Similarity=-0.015 Sum_probs=37.4
Q ss_pred cccCCccHHHHHHHHh-----CCCCHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 006319 567 VNSFRPDIMEAVYAWA-----KGSKFYEIMEITPVFEGSLIRAIRRLEEVLQ 613 (650)
Q Consensus 567 ~~~~~~~Lm~vVy~WA-----~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellr 613 (650)
+..+.+.--+|+.... .|.|+.||-+..+++++.+=+.+.|.-.-|+
T Consensus 8 l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 8 LSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4456666666665544 8999999999999999999988888877776
No 126
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=20.72 E-value=71 Score=27.52 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 550 VAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 550 I~~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
+......+|+.... ...+.+++.-..|.+..+|.+..++..+++-|.+.+|++
T Consensus 15 ~~~~~~~~gl~~~~--------~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 15 FSELAKIHGLNKSV--------GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp HHHHHHHTTCCHHH--------HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhH--------HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455667764431 234555532246789999999999999999999999876
No 127
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=20.32 E-value=81 Score=27.03 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=29.8
Q ss_pred HHHHHHHHh-CCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 574 IMEAVYAWA-KGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 574 Lm~vVy~WA-~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
++..++... .|.+..+|.+...+..+++-|.+.||++
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444321 5789999999999999999999999987
No 128
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=20.13 E-value=79 Score=26.42 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHH
Q 006319 575 MEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEE 610 (650)
Q Consensus 575 m~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~E 610 (650)
..++..+..|.|..+|.+..++...+|-||++|..+
T Consensus 24 ~~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 24 LKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 345555678999999999999999999999888654
No 129
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=20.08 E-value=1e+02 Score=26.52 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHH
Q 006319 574 IMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEV 611 (650)
Q Consensus 574 Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~El 611 (650)
++..+ |..|.++.+|.+..++..+++-|.+.+|++-
T Consensus 42 iL~~l--~~~~~~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 42 ILKAT--SEEPRSMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp HHHHH--HHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHH--HHCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 44444 4455599999999999999999999999873
Done!